Query 010617
Match_columns 506
No_of_seqs 136 out of 1448
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 02:36:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010617.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010617hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02562 UDP-glycosyltransfera 100.0 1.1E-64 2.4E-69 523.8 45.0 433 3-493 6-448 (448)
2 PLN02207 UDP-glycosyltransfera 100.0 3.2E-63 7E-68 511.1 45.7 443 1-494 1-465 (468)
3 PLN02152 indole-3-acetate beta 100.0 2.5E-63 5.3E-68 511.0 44.6 432 1-492 1-454 (455)
4 PLN02410 UDP-glucoronosyl/UDP- 100.0 2.9E-63 6.3E-68 511.9 43.0 432 3-494 7-450 (451)
5 PLN02555 limonoid glucosyltran 100.0 7.1E-63 1.5E-67 510.8 45.0 449 3-498 7-473 (480)
6 PLN02173 UDP-glucosyl transfer 100.0 1.1E-62 2.5E-67 505.2 43.1 426 1-493 1-447 (449)
7 PLN02554 UDP-glycosyltransfera 100.0 4E-62 8.7E-67 510.1 42.5 441 3-496 2-480 (481)
8 PLN02210 UDP-glucosyl transfer 100.0 6.7E-62 1.5E-66 503.6 43.6 429 3-493 8-454 (456)
9 PLN00164 glucosyltransferase; 100.0 9.9E-62 2.2E-66 505.4 44.2 440 1-496 1-475 (480)
10 PLN02863 UDP-glucoronosyl/UDP- 100.0 1.6E-61 3.4E-66 502.3 43.8 444 3-497 9-474 (477)
11 PLN02992 coniferyl-alcohol glu 100.0 1.5E-61 3.3E-66 499.5 43.1 429 3-496 5-471 (481)
12 PLN03004 UDP-glycosyltransfera 100.0 6.8E-61 1.5E-65 492.4 40.4 431 1-483 1-450 (451)
13 PLN03015 UDP-glucosyl transfer 100.0 1.9E-60 4.1E-65 488.7 43.0 434 1-493 1-467 (470)
14 PLN02167 UDP-glycosyltransfera 100.0 1.5E-60 3.3E-65 497.4 42.7 446 1-495 1-473 (475)
15 PLN02448 UDP-glycosyltransfera 100.0 2.2E-60 4.8E-65 495.2 42.6 430 3-494 10-457 (459)
16 PLN02670 transferase, transfer 100.0 2.9E-60 6.3E-65 489.7 41.8 438 3-496 6-467 (472)
17 PLN03007 UDP-glucosyltransfera 100.0 1.6E-59 3.5E-64 491.2 44.4 435 3-494 5-480 (482)
18 PLN02208 glycosyltransferase f 100.0 8E-60 1.7E-64 485.1 40.2 414 1-495 1-440 (442)
19 PLN02764 glycosyltransferase f 100.0 2.1E-59 4.4E-64 479.7 42.5 419 3-497 5-448 (453)
20 PLN02534 UDP-glycosyltransfera 100.0 3.6E-59 7.8E-64 483.8 43.1 440 1-495 5-487 (491)
21 PLN00414 glycosyltransferase f 100.0 7.4E-59 1.6E-63 478.5 40.4 420 1-497 1-443 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 3.2E-55 6.9E-60 459.5 32.5 422 3-498 20-471 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.1E-55 2.4E-60 469.2 3.5 421 5-503 2-453 (500)
24 KOG1192 UDP-glucuronosyl and U 100.0 6.4E-44 1.4E-48 378.8 23.9 433 3-496 5-457 (496)
25 TIGR01426 MGT glycosyltransfer 100.0 5.9E-42 1.3E-46 352.9 35.3 375 10-492 2-389 (392)
26 cd03784 GT1_Gtf_like This fami 100.0 1.1E-41 2.4E-46 352.0 28.4 376 4-490 1-399 (401)
27 COG1819 Glycosyl transferases, 100.0 6.9E-39 1.5E-43 327.6 27.0 393 3-495 1-401 (406)
28 PF13528 Glyco_trans_1_3: Glyc 99.9 4.2E-23 9.2E-28 206.6 27.5 305 4-454 1-317 (318)
29 PRK12446 undecaprenyldiphospho 99.9 1E-22 2.2E-27 205.6 27.4 317 5-464 3-333 (352)
30 TIGR00661 MJ1255 conserved hyp 99.9 2.8E-21 6E-26 193.6 24.9 126 309-461 188-318 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.8 1.3E-18 2.8E-23 174.1 29.4 341 4-491 1-353 (357)
32 PRK00726 murG undecaprenyldiph 99.8 5.7E-18 1.2E-22 172.3 26.6 325 4-472 2-339 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 8.1E-17 1.8E-21 163.2 25.9 321 5-467 1-334 (350)
34 TIGR00215 lpxB lipid-A-disacch 99.7 3E-15 6.6E-20 153.3 20.5 351 3-488 5-382 (385)
35 TIGR01133 murG undecaprenyldip 99.7 2E-14 4.4E-19 145.5 25.8 87 376-468 243-332 (348)
36 PRK13609 diacylglycerol glucos 99.7 2.1E-14 4.6E-19 147.4 25.5 141 308-466 201-347 (380)
37 TIGR03590 PseG pseudaminic aci 99.6 2.4E-14 5.1E-19 140.2 21.5 104 309-423 170-278 (279)
38 COG4671 Predicted glycosyl tra 99.6 1E-13 2.2E-18 132.7 23.2 331 3-458 9-366 (400)
39 PRK13608 diacylglycerol glucos 99.5 1.7E-12 3.7E-17 133.6 21.2 163 308-492 201-369 (391)
40 PRK00025 lpxB lipid-A-disaccha 99.5 5E-12 1.1E-16 129.8 24.5 106 377-490 255-373 (380)
41 PF04101 Glyco_tran_28_C: Glyc 99.4 8.2E-15 1.8E-19 132.4 -1.9 140 311-461 1-148 (167)
42 PLN02605 monogalactosyldiacylg 99.4 2.4E-10 5.2E-15 117.4 28.9 94 367-473 265-361 (382)
43 cd03814 GT1_like_2 This family 99.4 1.6E-09 3.5E-14 109.2 31.8 195 249-471 143-346 (364)
44 PF03033 Glyco_transf_28: Glyc 99.3 1.2E-11 2.6E-16 108.0 9.1 125 6-140 1-133 (139)
45 TIGR03492 conserved hypothetic 99.3 8E-10 1.7E-14 113.6 23.6 191 249-465 159-372 (396)
46 cd03823 GT1_ExpE7_like This fa 99.2 1.3E-08 2.8E-13 102.3 28.7 140 309-466 190-338 (359)
47 PLN02871 UDP-sulfoquinovose:DA 99.2 3.5E-08 7.5E-13 104.2 32.4 134 311-466 264-409 (465)
48 cd03794 GT1_wbuB_like This fam 99.2 9.4E-09 2E-13 104.1 27.1 138 309-466 219-374 (394)
49 COG3980 spsG Spore coat polysa 99.2 2.7E-09 5.9E-14 99.8 19.6 147 309-471 158-307 (318)
50 cd03818 GT1_ExpC_like This fam 99.2 7.5E-08 1.6E-12 99.4 31.9 87 367-463 281-372 (396)
51 cd03817 GT1_UGDG_like This fam 99.1 9.4E-08 2E-12 96.4 30.1 132 309-461 201-347 (374)
52 cd03800 GT1_Sucrose_synthase T 99.1 8.7E-08 1.9E-12 98.4 30.1 85 366-462 282-373 (398)
53 cd03801 GT1_YqgM_like This fam 99.1 1.7E-07 3.7E-12 93.7 30.6 89 365-465 254-349 (374)
54 cd03808 GT1_cap1E_like This fa 99.1 2.5E-07 5.4E-12 92.5 31.4 141 309-465 187-337 (359)
55 cd04962 GT1_like_5 This family 99.0 2.1E-07 4.5E-12 94.8 28.1 87 366-464 252-343 (371)
56 TIGR00236 wecB UDP-N-acetylglu 99.0 1.9E-08 4.1E-13 102.7 19.8 138 309-467 197-344 (365)
57 cd03816 GT1_ALG1_like This fam 99.0 5.7E-07 1.2E-11 93.5 30.8 77 367-457 294-381 (415)
58 cd03825 GT1_wcfI_like This fam 99.0 7.7E-07 1.7E-11 90.1 30.5 85 365-461 242-334 (365)
59 PRK05749 3-deoxy-D-manno-octul 99.0 8.2E-07 1.8E-11 92.6 29.7 82 379-470 315-401 (425)
60 cd03795 GT1_like_4 This family 99.0 9.5E-07 2.1E-11 89.1 28.6 138 309-465 190-340 (357)
61 cd03820 GT1_amsD_like This fam 98.9 1.7E-06 3.7E-11 86.0 29.5 189 247-472 132-334 (348)
62 cd03798 GT1_wlbH_like This fam 98.9 2.8E-06 6.1E-11 85.2 31.1 187 248-460 146-347 (377)
63 cd03786 GT1_UDP-GlcNAc_2-Epime 98.9 5E-08 1.1E-12 99.3 18.4 136 308-463 197-343 (363)
64 PRK10307 putative glycosyl tra 98.9 3.2E-06 7E-11 87.7 31.0 116 367-495 284-408 (412)
65 TIGR03449 mycothiol_MshA UDP-N 98.9 6.4E-06 1.4E-10 85.2 32.0 90 366-467 282-378 (405)
66 cd03821 GT1_Bme6_like This fam 98.9 2.5E-06 5.5E-11 85.8 28.3 90 366-469 261-357 (375)
67 cd03805 GT1_ALG2_like This fam 98.8 3.5E-06 7.6E-11 86.6 28.9 85 366-463 279-370 (392)
68 cd03796 GT1_PIG-A_like This fa 98.8 8.3E-06 1.8E-10 84.3 29.6 113 366-495 249-368 (398)
69 cd05844 GT1_like_7 Glycosyltra 98.8 7E-06 1.5E-10 83.4 27.5 87 365-463 243-342 (367)
70 PF04007 DUF354: Protein of un 98.8 9E-06 2E-10 81.0 27.0 111 4-137 1-112 (335)
71 cd03802 GT1_AviGT4_like This f 98.7 5E-06 1.1E-10 83.2 24.7 130 311-458 172-309 (335)
72 cd03819 GT1_WavL_like This fam 98.7 2.6E-05 5.6E-10 78.7 29.8 140 309-462 184-336 (355)
73 cd03811 GT1_WabH_like This fam 98.7 5.8E-06 1.3E-10 82.2 24.4 89 366-466 245-341 (353)
74 TIGR02468 sucrsPsyn_pln sucros 98.7 2.2E-05 4.9E-10 87.8 30.6 92 366-467 547-647 (1050)
75 cd03822 GT1_ecORF704_like This 98.7 1.5E-05 3.2E-10 80.3 27.3 86 365-463 245-340 (366)
76 PLN02846 digalactosyldiacylgly 98.7 1.8E-05 4E-10 82.2 28.1 73 371-458 288-364 (462)
77 cd03799 GT1_amsK_like This is 98.7 1.8E-05 3.9E-10 79.7 27.9 83 366-460 235-330 (355)
78 cd04955 GT1_like_6 This family 98.7 3.9E-05 8.4E-10 77.6 29.0 154 312-490 195-360 (363)
79 cd03812 GT1_CapH_like This fam 98.6 3.7E-05 8.1E-10 77.6 28.1 87 366-465 248-339 (358)
80 TIGR02472 sucr_P_syn_N sucrose 98.6 5.2E-05 1.1E-09 79.4 29.3 86 366-461 316-410 (439)
81 cd04951 GT1_WbdM_like This fam 98.6 4.6E-05 1E-09 76.9 27.9 93 366-472 244-342 (360)
82 cd03807 GT1_WbnK_like This fam 98.6 0.00022 4.7E-09 71.4 31.9 81 366-460 250-335 (365)
83 PRK09922 UDP-D-galactose:(gluc 98.6 2.8E-05 6E-10 79.2 25.5 131 310-460 180-327 (359)
84 PRK01021 lpxB lipid-A-disaccha 98.6 1.3E-05 2.9E-10 84.5 22.4 220 250-488 361-602 (608)
85 cd03809 GT1_mtfB_like This fam 98.5 3.4E-05 7.5E-10 77.6 24.7 93 365-471 251-350 (365)
86 TIGR03088 stp2 sugar transfera 98.5 0.00041 9E-09 70.8 32.2 84 367-462 255-343 (374)
87 COG1519 KdtA 3-deoxy-D-manno-o 98.5 0.0002 4.3E-09 71.9 27.8 314 13-473 58-402 (419)
88 TIGR02470 sucr_synth sucrose s 98.4 0.0013 2.8E-08 72.4 34.8 88 366-463 618-719 (784)
89 TIGR02149 glgA_Coryne glycogen 98.4 0.00035 7.6E-09 71.6 29.3 141 310-463 201-358 (388)
90 PLN02275 transferase, transfer 98.4 0.00032 6.8E-09 71.8 28.4 75 367-455 286-371 (371)
91 PF02684 LpxB: Lipid-A-disacch 98.4 4.6E-05 9.9E-10 77.0 20.5 217 250-483 133-366 (373)
92 PRK14089 ipid-A-disaccharide s 98.4 7.3E-06 1.6E-10 82.3 14.7 147 309-474 167-331 (347)
93 cd03792 GT1_Trehalose_phosphor 98.3 0.00048 1E-08 70.4 26.8 110 366-492 251-369 (372)
94 TIGR03568 NeuC_NnaA UDP-N-acet 98.3 0.00011 2.4E-09 74.9 21.9 132 309-460 201-341 (365)
95 PLN02501 digalactosyldiacylgly 98.3 0.00031 6.7E-09 75.2 24.7 79 368-461 602-685 (794)
96 cd03806 GT1_ALG11_like This fa 98.3 0.00067 1.5E-08 70.6 27.2 80 366-458 304-393 (419)
97 TIGR03087 stp1 sugar transfera 98.2 0.00034 7.4E-09 72.2 24.2 84 366-463 279-368 (397)
98 cd03804 GT1_wbaZ_like This fam 98.2 7.8E-05 1.7E-09 75.4 18.4 135 312-466 197-336 (351)
99 PLN02949 transferase, transfer 98.2 0.0035 7.6E-08 65.9 30.5 113 366-494 334-456 (463)
100 COG0381 WecB UDP-N-acetylgluco 98.2 0.00046 9.9E-09 68.8 22.2 160 309-493 204-372 (383)
101 PF02350 Epimerase_2: UDP-N-ac 98.2 8.8E-06 1.9E-10 82.1 10.3 210 250-489 122-345 (346)
102 KOG3349 Predicted glycosyltran 98.1 1.1E-05 2.4E-10 68.6 8.2 117 310-434 4-132 (170)
103 PRK15179 Vi polysaccharide bio 98.1 0.011 2.5E-07 64.8 33.4 92 366-467 573-673 (694)
104 COG0763 LpxB Lipid A disacchar 98.1 0.00052 1.1E-08 68.2 19.9 221 249-492 135-379 (381)
105 PRK00654 glgA glycogen synthas 98.1 0.0011 2.4E-08 70.0 24.0 132 309-456 281-427 (466)
106 cd03791 GT1_Glycogen_synthase_ 98.1 0.002 4.2E-08 68.3 25.6 150 309-472 295-457 (476)
107 TIGR02095 glgA glycogen/starch 98.0 0.0029 6.4E-08 66.9 26.6 133 310-456 291-436 (473)
108 PLN00142 sucrose synthase 98.0 0.0062 1.3E-07 67.3 29.2 87 367-465 642-744 (815)
109 cd04950 GT1_like_1 Glycosyltra 98.0 0.002 4.3E-08 66.0 23.4 181 247-458 150-341 (373)
110 PF13844 Glyco_transf_41: Glyc 97.9 0.00015 3.2E-09 74.9 13.6 145 307-464 282-437 (468)
111 TIGR02918 accessory Sec system 97.8 0.0091 2E-07 63.5 24.1 87 366-458 375-468 (500)
112 cd04946 GT1_AmsK_like This fam 97.7 0.0013 2.8E-08 68.2 17.2 112 366-489 288-406 (407)
113 PRK15484 lipopolysaccharide 1, 97.7 0.0035 7.7E-08 64.3 19.4 86 365-461 255-348 (380)
114 PRK15427 colanic acid biosynth 97.6 0.0032 6.9E-08 65.3 17.8 112 366-492 278-403 (406)
115 COG5017 Uncharacterized conser 97.6 0.00097 2.1E-08 55.9 10.4 109 312-436 2-123 (161)
116 cd03813 GT1_like_3 This family 97.5 0.1 2.3E-06 55.2 27.7 89 366-465 353-450 (475)
117 PLN02316 synthase/transferase 97.5 0.32 6.9E-06 55.5 32.7 84 366-457 899-998 (1036)
118 cd04949 GT1_gtfA_like This fam 97.5 0.015 3.4E-07 59.1 20.2 85 366-459 260-347 (372)
119 PRK14099 glycogen synthase; Pr 97.4 0.27 5.8E-06 52.2 31.0 41 1-41 1-47 (485)
120 PF00534 Glycos_transf_1: Glyc 97.4 0.0032 6.9E-08 56.5 12.4 90 365-466 71-167 (172)
121 PRK10125 putative glycosyl tra 97.3 0.11 2.3E-06 53.9 24.3 114 312-451 243-365 (405)
122 cd01635 Glycosyltransferase_GT 97.3 0.033 7.2E-07 51.5 18.9 48 366-415 160-215 (229)
123 TIGR02193 heptsyl_trn_I lipopo 97.0 0.093 2E-06 52.4 20.2 135 308-455 178-319 (319)
124 PF13692 Glyco_trans_1_4: Glyc 96.9 0.0051 1.1E-07 52.7 8.3 127 311-457 3-135 (135)
125 KOG4626 O-linked N-acetylgluco 96.7 0.022 4.9E-07 59.5 12.6 183 270-474 725-918 (966)
126 PRK09814 beta-1,6-galactofuran 96.7 0.0059 1.3E-07 61.5 8.2 109 366-490 206-331 (333)
127 PRK10422 lipopolysaccharide co 96.3 0.3 6.5E-06 49.5 18.1 108 1-133 1-113 (352)
128 PRK10916 ADP-heptose:LPS hepto 96.2 0.59 1.3E-05 47.2 19.3 103 4-133 1-106 (348)
129 COG3914 Spy Predicted O-linked 96.1 0.06 1.3E-06 56.2 11.7 134 307-453 427-574 (620)
130 PF13477 Glyco_trans_4_2: Glyc 96.1 0.1 2.2E-06 44.8 11.8 103 5-136 1-107 (139)
131 cd03789 GT1_LPS_heptosyltransf 96.0 0.58 1.3E-05 45.6 17.9 102 5-133 1-105 (279)
132 TIGR02201 heptsyl_trn_III lipo 95.9 0.65 1.4E-05 46.8 18.1 105 5-133 1-108 (344)
133 COG1817 Uncharacterized protei 95.8 2.1 4.5E-05 41.8 22.7 104 12-137 8-113 (346)
134 PRK10017 colanic acid biosynth 95.7 0.26 5.7E-06 51.2 14.3 176 301-492 226-422 (426)
135 TIGR02195 heptsyl_trn_II lipop 95.6 1.2 2.5E-05 44.8 18.4 102 5-133 1-105 (334)
136 PRK14098 glycogen synthase; Pr 95.4 0.32 6.8E-06 51.7 14.1 130 310-455 307-449 (489)
137 PHA01633 putative glycosyl tra 95.3 0.81 1.8E-05 45.9 15.9 85 365-457 199-307 (335)
138 PF06722 DUF1205: Protein of u 95.3 0.023 5E-07 45.8 3.9 53 296-348 27-84 (97)
139 PRK15490 Vi polysaccharide bio 95.0 0.84 1.8E-05 48.7 15.4 64 366-436 454-522 (578)
140 PF13524 Glyco_trans_1_2: Glyc 94.6 0.44 9.6E-06 37.7 9.8 81 392-489 9-91 (92)
141 PF13579 Glyco_trans_4_4: Glyc 94.6 0.068 1.5E-06 46.5 5.4 97 19-136 6-104 (160)
142 COG3660 Predicted nucleoside-d 94.5 4.5 9.8E-05 38.5 17.2 78 327-410 186-270 (329)
143 PHA01630 putative group 1 glyc 94.5 2.4 5.1E-05 42.6 17.0 93 373-473 196-313 (331)
144 PRK10964 ADP-heptose:LPS hepto 94.4 4.2 9.1E-05 40.5 18.5 44 4-47 1-46 (322)
145 COG0859 RfaF ADP-heptose:LPS h 93.3 5.7 0.00012 39.9 17.3 104 4-133 2-107 (334)
146 KOG0853 Glycosyltransferase [C 93.0 11 0.00023 39.7 18.6 62 397-466 381-442 (495)
147 PF12000 Glyco_trans_4_3: Gkyc 92.8 0.75 1.6E-05 41.3 8.9 95 29-136 1-96 (171)
148 KOG1387 Glycosyltransferase [C 91.5 16 0.00035 36.4 17.3 40 106-145 149-189 (465)
149 TIGR03713 acc_sec_asp1 accesso 91.4 2.2 4.8E-05 45.6 11.9 89 367-472 409-507 (519)
150 PF08660 Alg14: Oligosaccharid 90.8 1.9 4.1E-05 38.8 9.1 114 7-135 2-128 (170)
151 KOG2941 Beta-1,4-mannosyltrans 90.6 19 0.00042 35.8 26.5 130 307-456 252-404 (444)
152 PRK02261 methylaspartate mutas 90.5 0.79 1.7E-05 39.6 6.2 49 1-49 1-49 (137)
153 PF13439 Glyco_transf_4: Glyco 90.1 1.1 2.4E-05 39.4 7.2 102 13-140 11-113 (177)
154 PF06258 Mito_fiss_Elm1: Mitoc 89.7 3.3 7.1E-05 41.2 10.8 146 250-415 97-259 (311)
155 TIGR02400 trehalose_OtsA alpha 88.4 3.4 7.4E-05 43.4 10.3 100 373-492 342-454 (456)
156 PLN02939 transferase, transfer 88.2 22 0.00048 40.6 16.7 91 366-464 836-942 (977)
157 cd02067 B12-binding B12 bindin 87.1 10 0.00022 31.5 10.7 44 5-48 1-44 (119)
158 PRK05986 cob(I)alamin adenolsy 86.2 13 0.00028 34.0 11.4 101 2-118 21-126 (191)
159 COG0003 ArsA Predicted ATPase 85.5 9.5 0.00021 38.0 11.0 42 3-44 1-43 (322)
160 TIGR02919 accessory Sec system 85.0 4.1 9E-05 42.5 8.7 134 309-468 283-423 (438)
161 PF02374 ArsA_ATPase: Anion-tr 84.8 3.3 7.2E-05 41.0 7.6 41 4-44 1-42 (305)
162 COG0438 RfaG Glycosyltransfera 83.9 42 0.0009 32.2 17.5 87 367-465 257-350 (381)
163 PRK05973 replicative DNA helic 83.6 9 0.00019 36.4 9.5 45 6-50 67-111 (237)
164 TIGR00715 precor6x_red precorr 83.5 5.7 0.00012 38.2 8.3 90 4-134 1-98 (256)
165 PRK13932 stationary phase surv 83.5 14 0.0003 35.5 10.8 114 3-136 5-133 (257)
166 cd00561 CobA_CobO_BtuR ATP:cor 82.6 27 0.00058 31.0 11.5 98 5-118 4-106 (159)
167 cd03788 GT1_TPS Trehalose-6-Ph 82.3 13 0.00028 39.2 11.3 72 372-458 346-428 (460)
168 cd02070 corrinoid_protein_B12- 82.2 13 0.00028 34.3 10.0 107 3-133 82-189 (201)
169 PHA02542 41 41 helicase; Provi 81.2 11 0.00023 39.9 9.9 43 6-48 193-235 (473)
170 PF05159 Capsule_synth: Capsul 79.8 13 0.00028 35.9 9.6 41 370-413 186-226 (269)
171 smart00851 MGS MGS-like domain 79.4 16 0.00034 28.8 8.3 80 20-133 2-90 (90)
172 TIGR02370 pyl_corrinoid methyl 78.0 23 0.00051 32.5 10.2 106 3-132 84-190 (197)
173 TIGR01007 eps_fam capsular exo 77.7 38 0.00082 31.0 11.6 38 3-40 16-55 (204)
174 cd00550 ArsA_ATPase Oxyanion-t 77.6 15 0.00032 35.3 9.1 44 6-50 3-46 (254)
175 PRK06849 hypothetical protein; 75.4 18 0.00038 37.1 9.6 38 1-42 1-39 (389)
176 PF02142 MGS: MGS-like domain 75.4 6.9 0.00015 31.2 5.1 84 20-133 2-95 (95)
177 TIGR00708 cobA cob(I)alamin ad 75.1 56 0.0012 29.4 11.3 97 4-117 6-107 (173)
178 PRK08506 replicative DNA helic 74.3 21 0.00046 37.7 9.9 44 6-49 195-238 (472)
179 COG2894 MinD Septum formation 74.1 24 0.00053 33.0 8.7 37 5-41 3-41 (272)
180 COG0496 SurE Predicted acid ph 74.1 12 0.00026 35.7 7.1 101 16-137 12-126 (252)
181 PRK14501 putative bifunctional 73.5 24 0.00053 39.6 10.7 107 371-496 346-464 (726)
182 cd01121 Sms Sms (bacterial rad 72.8 42 0.00091 34.3 11.3 42 6-47 85-126 (372)
183 PRK08760 replicative DNA helic 72.8 14 0.0003 39.1 8.1 44 6-49 232-276 (476)
184 cd00984 DnaB_C DnaB helicase C 72.4 29 0.00062 32.7 9.6 44 6-49 16-60 (242)
185 COG1703 ArgK Putative periplas 71.9 45 0.00097 32.8 10.4 117 3-137 50-175 (323)
186 cd02071 MM_CoA_mut_B12_BD meth 71.7 59 0.0013 27.2 11.2 43 5-47 1-43 (122)
187 PF01075 Glyco_transf_9: Glyco 71.7 7.3 0.00016 36.9 5.3 98 308-411 104-208 (247)
188 TIGR03600 phage_DnaB phage rep 71.4 27 0.00059 36.3 9.8 44 6-49 197-241 (421)
189 PRK05595 replicative DNA helic 70.7 22 0.00049 37.2 9.1 44 6-49 204-248 (444)
190 PF02951 GSH-S_N: Prokaryotic 70.3 7.4 0.00016 32.6 4.3 39 4-42 1-42 (119)
191 PF04464 Glyphos_transf: CDP-G 70.3 13 0.00028 37.7 7.1 111 366-489 251-367 (369)
192 COG4370 Uncharacterized protei 70.1 20 0.00042 35.1 7.5 92 373-473 301-396 (412)
193 PF07429 Glyco_transf_56: 4-al 69.9 1.1E+02 0.0025 30.6 13.0 82 367-456 245-332 (360)
194 TIGR00087 surE 5'/3'-nucleotid 69.5 37 0.0008 32.4 9.4 100 18-136 14-128 (244)
195 PRK08006 replicative DNA helic 69.3 27 0.00058 36.9 9.2 44 6-49 227-271 (471)
196 PF02441 Flavoprotein: Flavopr 69.2 6.6 0.00014 33.3 3.9 45 4-49 1-45 (129)
197 PRK01175 phosphoribosylformylg 68.4 48 0.001 32.0 10.1 59 1-70 1-59 (261)
198 COG2185 Sbm Methylmalonyl-CoA 68.2 13 0.00027 32.2 5.3 47 1-47 10-56 (143)
199 COG4088 Predicted nucleotide k 67.9 20 0.00044 33.1 6.8 105 6-143 4-115 (261)
200 cd01424 MGS_CPS_II Methylglyox 67.5 48 0.001 27.0 8.7 84 15-133 10-100 (110)
201 PRK06321 replicative DNA helic 67.1 35 0.00075 36.1 9.5 44 6-49 229-273 (472)
202 PRK13933 stationary phase surv 67.0 91 0.002 29.9 11.5 28 19-47 15-42 (253)
203 cd01423 MGS_CPS_I_III Methylgl 67.0 35 0.00075 28.2 7.8 87 16-133 11-106 (116)
204 PRK02797 4-alpha-L-fucosyltran 66.8 64 0.0014 31.9 10.4 79 367-453 206-290 (322)
205 PRK00090 bioD dithiobiotin syn 66.8 47 0.001 30.9 9.6 33 6-38 2-35 (222)
206 cd03793 GT1_Glycogen_synthase_ 66.7 20 0.00044 38.5 7.6 79 376-457 467-552 (590)
207 PF02310 B12-binding: B12 bind 66.5 16 0.00034 30.2 5.7 44 5-48 2-45 (121)
208 PRK11823 DNA repair protein Ra 66.4 39 0.00084 35.5 9.7 42 6-47 83-124 (446)
209 PLN03063 alpha,alpha-trehalose 65.9 24 0.00053 40.0 8.6 104 374-496 363-479 (797)
210 PF04127 DFP: DNA / pantothena 65.7 9.6 0.00021 34.7 4.5 40 2-41 2-53 (185)
211 cd01425 RPS2 Ribosomal protein 65.4 38 0.00083 31.0 8.4 113 18-139 43-161 (193)
212 PF12146 Hydrolase_4: Putative 65.1 13 0.00027 28.7 4.4 34 4-37 16-49 (79)
213 TIGR03880 KaiC_arch_3 KaiC dom 64.8 30 0.00065 32.3 7.9 46 5-50 18-63 (224)
214 TIGR02655 circ_KaiC circadian 64.6 68 0.0015 34.1 11.3 46 5-50 265-310 (484)
215 PRK08305 spoVFB dipicolinate s 64.6 12 0.00026 34.3 4.9 44 2-46 4-48 (196)
216 PRK12342 hypothetical protein; 64.4 60 0.0013 31.2 9.8 32 106-137 108-145 (254)
217 COG1066 Sms Predicted ATP-depe 64.1 45 0.00097 34.3 9.0 102 6-136 96-218 (456)
218 COG1618 Predicted nucleotide k 64.1 22 0.00048 31.6 6.0 56 3-67 5-60 (179)
219 TIGR03029 EpsG chain length de 63.5 1.1E+02 0.0023 29.6 11.7 37 4-40 103-141 (274)
220 TIGR01425 SRP54_euk signal rec 63.4 43 0.00094 34.8 9.2 43 5-47 102-144 (429)
221 PF04413 Glycos_transf_N: 3-De 63.2 17 0.00037 33.1 5.6 93 12-136 29-126 (186)
222 PRK05636 replicative DNA helic 62.7 21 0.00045 38.1 6.9 43 6-48 268-311 (505)
223 PRK05632 phosphate acetyltrans 62.6 89 0.0019 34.8 12.1 38 1-39 1-39 (684)
224 PRK09165 replicative DNA helic 62.6 36 0.00079 36.2 8.8 44 6-49 220-278 (497)
225 TIGR00347 bioD dethiobiotin sy 62.6 88 0.0019 27.4 10.1 27 11-37 6-32 (166)
226 cd01124 KaiC KaiC is a circadi 62.5 24 0.00052 31.6 6.6 44 6-49 2-45 (187)
227 PRK10867 signal recognition pa 62.5 41 0.00088 35.1 8.8 42 5-46 102-144 (433)
228 PRK13935 stationary phase surv 62.4 90 0.0019 30.0 10.5 43 4-48 1-43 (253)
229 PF00551 Formyl_trans_N: Formy 61.5 75 0.0016 28.6 9.5 106 4-137 1-110 (181)
230 COG0541 Ffh Signal recognition 61.5 54 0.0012 33.9 9.2 48 3-50 100-147 (451)
231 PF02702 KdpD: Osmosensitive K 60.8 40 0.00086 31.1 7.3 38 3-40 5-42 (211)
232 KOG0202 Ca2+ transporting ATPa 60.6 1.3E+02 0.0027 34.0 12.2 154 310-496 572-751 (972)
233 PRK13234 nifH nitrogenase redu 60.6 15 0.00032 36.2 5.1 42 1-42 1-43 (295)
234 PRK05647 purN phosphoribosylgl 60.2 76 0.0016 29.3 9.4 34 4-40 2-37 (200)
235 PRK13789 phosphoribosylamine-- 60.0 44 0.00095 34.8 8.7 38 1-43 1-39 (426)
236 PRK07004 replicative DNA helic 59.9 44 0.00095 35.2 8.7 44 6-49 216-260 (460)
237 PF00448 SRP54: SRP54-type pro 59.9 57 0.0012 29.9 8.5 89 6-116 4-92 (196)
238 PRK08840 replicative DNA helic 59.3 52 0.0011 34.7 9.1 44 6-49 220-264 (464)
239 TIGR00416 sms DNA repair prote 59.1 57 0.0012 34.3 9.4 42 6-47 97-138 (454)
240 PRK07773 replicative DNA helic 59.0 52 0.0011 37.9 9.8 44 6-49 220-264 (886)
241 PRK11519 tyrosine kinase; Prov 58.8 65 0.0014 36.1 10.3 117 3-135 525-667 (719)
242 PRK06904 replicative DNA helic 58.7 48 0.001 35.1 8.8 44 6-49 224-268 (472)
243 TIGR00665 DnaB replicative DNA 58.4 55 0.0012 34.1 9.2 43 6-48 198-241 (434)
244 PF02606 LpxK: Tetraacyldisacc 58.4 27 0.00058 35.0 6.5 35 9-43 43-77 (326)
245 PRK01077 cobyrinic acid a,c-di 58.3 91 0.002 32.8 10.8 35 5-39 5-40 (451)
246 TIGR00959 ffh signal recogniti 58.3 66 0.0014 33.5 9.5 42 5-46 101-143 (428)
247 KOG1111 N-acetylglucosaminyltr 58.1 2.2E+02 0.0047 28.9 21.8 82 323-411 209-301 (426)
248 PRK00346 surE 5'(3')-nucleotid 57.8 82 0.0018 30.2 9.4 99 17-136 13-124 (250)
249 PRK05748 replicative DNA helic 57.5 50 0.0011 34.7 8.7 44 6-49 206-250 (448)
250 TIGR03878 thermo_KaiC_2 KaiC d 56.6 86 0.0019 30.1 9.6 38 6-43 39-76 (259)
251 PF06925 MGDG_synth: Monogalac 56.0 28 0.00061 30.9 5.7 44 87-136 75-124 (169)
252 PRK13931 stationary phase surv 55.8 79 0.0017 30.5 9.0 100 18-136 14-129 (261)
253 cd07039 TPP_PYR_POX Pyrimidine 55.8 91 0.002 27.6 8.9 27 386-412 64-96 (164)
254 cd02037 MRP-like MRP (Multiple 55.1 49 0.0011 29.3 7.1 33 10-42 7-39 (169)
255 COG2874 FlaH Predicted ATPases 54.9 1.3E+02 0.0027 28.2 9.6 92 13-119 38-135 (235)
256 cd03115 SRP The signal recogni 54.6 72 0.0016 28.2 8.2 39 6-44 3-41 (173)
257 PRK04328 hypothetical protein; 54.1 1.1E+02 0.0024 29.2 9.8 45 5-49 25-69 (249)
258 PRK10818 cell division inhibit 54.1 1.2E+02 0.0027 28.9 10.4 34 8-41 8-41 (270)
259 COG1484 DnaC DNA replication p 53.4 22 0.00048 34.1 4.9 46 4-49 106-151 (254)
260 PRK09620 hypothetical protein; 53.1 32 0.0007 32.4 5.8 40 1-40 1-52 (229)
261 TIGR01286 nifK nitrogenase mol 53.0 74 0.0016 34.1 9.1 27 106-135 436-462 (515)
262 cd03466 Nitrogenase_NifN_2 Nit 52.9 71 0.0015 33.3 8.9 27 106-135 371-397 (429)
263 PLN02470 acetolactate synthase 52.7 73 0.0016 34.7 9.3 81 326-412 15-109 (585)
264 cd03114 ArgK-like The function 51.7 1.6E+02 0.0035 25.5 10.4 36 6-41 2-37 (148)
265 PRK03359 putative electron tra 51.7 1.2E+02 0.0025 29.3 9.4 32 106-137 111-148 (256)
266 TIGR00064 ftsY signal recognit 51.6 71 0.0015 31.0 8.1 40 4-43 72-112 (272)
267 COG0552 FtsY Signal recognitio 51.4 89 0.0019 31.2 8.6 46 5-50 141-186 (340)
268 cd07038 TPP_PYR_PDC_IPDC_like 51.2 83 0.0018 27.8 7.9 28 386-413 60-93 (162)
269 cd01980 Chlide_reductase_Y Chl 51.2 68 0.0015 33.3 8.4 28 106-136 349-376 (416)
270 PRK02155 ppnK NAD(+)/NADH kina 50.9 89 0.0019 30.7 8.7 52 386-457 64-119 (291)
271 COG1698 Uncharacterized protei 50.8 61 0.0013 25.4 5.8 57 445-504 16-76 (93)
272 CHL00175 minD septum-site dete 50.7 2.1E+02 0.0045 27.6 11.4 37 5-41 16-54 (281)
273 PRK09841 cryptic autophosphory 50.4 1.7E+02 0.0036 32.9 11.8 39 3-41 530-570 (726)
274 PF02572 CobA_CobO_BtuR: ATP:c 50.2 95 0.0021 27.9 8.0 99 4-118 4-107 (172)
275 PF13419 HAD_2: Haloacid dehal 49.5 1.3E+02 0.0028 25.9 9.0 91 20-134 82-176 (176)
276 COG2910 Putative NADH-flavin r 49.4 21 0.00046 32.4 3.6 36 4-43 1-36 (211)
277 cd01974 Nitrogenase_MoFe_beta 49.3 82 0.0018 32.9 8.7 27 106-135 376-402 (435)
278 PF01975 SurE: Survival protei 49.0 30 0.00064 31.9 4.7 44 4-48 1-44 (196)
279 PRK06718 precorrin-2 dehydroge 48.5 2.2E+02 0.0048 26.2 11.4 146 308-473 10-164 (202)
280 PRK13886 conjugal transfer pro 48.3 2.5E+02 0.0054 26.7 11.3 43 1-43 1-43 (241)
281 PRK06249 2-dehydropantoate 2-r 48.1 45 0.00098 33.0 6.3 42 1-48 3-44 (313)
282 PRK06732 phosphopantothenate-- 48.1 35 0.00076 32.2 5.2 37 4-40 1-49 (229)
283 PRK06067 flagellar accessory p 47.9 61 0.0013 30.4 6.9 44 5-48 27-70 (234)
284 cd00532 MGS-like MGS-like doma 47.7 1.5E+02 0.0033 24.2 8.4 85 16-133 10-104 (112)
285 PF00731 AIRC: AIR carboxylase 47.6 1.9E+02 0.0042 25.3 11.0 139 311-473 2-148 (150)
286 cd02069 methionine_synthase_B1 47.4 48 0.001 30.9 5.9 47 3-49 88-134 (213)
287 COG0132 BioD Dethiobiotin synt 47.1 2.5E+02 0.0054 26.4 12.2 129 4-143 2-151 (223)
288 TIGR03371 cellulose_yhjQ cellu 47.1 2.4E+02 0.0053 26.3 11.5 37 6-42 4-41 (246)
289 TIGR02015 BchY chlorophyllide 46.9 1.8E+02 0.0038 30.3 10.6 27 106-135 354-380 (422)
290 PLN02929 NADH kinase 46.7 1.1E+02 0.0023 30.3 8.3 65 386-458 65-138 (301)
291 PRK06988 putative formyltransf 46.7 1.3E+02 0.0028 29.9 9.2 32 4-40 3-34 (312)
292 cd01965 Nitrogenase_MoFe_beta_ 46.3 48 0.001 34.5 6.4 27 106-135 370-396 (428)
293 PRK01231 ppnK inorganic polyph 46.0 1E+02 0.0022 30.3 8.3 53 386-458 63-119 (295)
294 KOG0780 Signal recognition par 45.9 53 0.0011 33.4 6.1 46 5-50 103-148 (483)
295 COG0052 RpsB Ribosomal protein 45.7 2.3E+02 0.0049 27.0 9.9 31 107-137 156-188 (252)
296 cd07035 TPP_PYR_POX_like Pyrim 45.4 1.7E+02 0.0036 25.2 8.9 28 386-413 60-93 (155)
297 PF03808 Glyco_tran_WecB: Glyc 45.4 2.2E+02 0.0048 25.3 10.8 100 19-143 36-140 (172)
298 PRK14974 cell division protein 44.9 87 0.0019 31.5 7.7 40 5-44 142-181 (336)
299 TIGR00725 conserved hypothetic 44.6 1E+02 0.0022 27.3 7.2 99 297-413 21-123 (159)
300 TIGR02398 gluc_glyc_Psyn gluco 44.5 4.2E+02 0.009 28.2 14.4 104 371-494 366-482 (487)
301 TIGR00379 cobB cobyrinic acid 44.5 2E+02 0.0044 30.2 10.7 106 6-138 2-120 (449)
302 PRK08862 short chain dehydroge 44.5 1.1E+02 0.0024 28.5 8.1 36 1-39 1-37 (227)
303 TIGR00460 fmt methionyl-tRNA f 44.0 1.5E+02 0.0032 29.5 9.2 32 4-40 1-32 (313)
304 TIGR02329 propionate_PrpR prop 43.9 2.3E+02 0.0049 30.5 11.1 42 90-137 131-172 (526)
305 PF07015 VirC1: VirC1 protein; 43.8 68 0.0015 30.3 6.2 39 6-44 4-43 (231)
306 PF01075 Glyco_transf_9: Glyco 43.1 1E+02 0.0022 29.0 7.7 99 3-137 105-211 (247)
307 PRK00784 cobyric acid synthase 42.7 3E+02 0.0065 29.2 11.8 34 6-39 5-39 (488)
308 PRK04885 ppnK inorganic polyph 42.5 56 0.0012 31.6 5.7 52 386-457 36-93 (265)
309 PF06745 KaiC: KaiC; InterPro 42.5 1.5E+02 0.0033 27.5 8.7 46 5-50 21-67 (226)
310 KOG1509 Predicted nucleic acid 42.4 64 0.0014 29.4 5.5 78 29-114 7-84 (209)
311 COG1435 Tdk Thymidine kinase [ 41.6 1.3E+02 0.0029 27.5 7.5 39 3-41 3-42 (201)
312 cd07025 Peptidase_S66 LD-Carbo 41.6 55 0.0012 32.0 5.6 75 321-414 45-121 (282)
313 TIGR00313 cobQ cobyric acid sy 41.3 4.2E+02 0.009 28.1 12.5 27 14-40 10-36 (475)
314 PRK14098 glycogen synthase; Pr 40.5 39 0.00084 35.9 4.7 38 4-41 6-49 (489)
315 PRK07313 phosphopantothenoylcy 40.5 39 0.00083 30.7 4.0 43 5-48 3-45 (182)
316 PF08323 Glyco_transf_5: Starc 40.4 38 0.00083 32.2 4.3 25 17-41 19-43 (245)
317 PRK10416 signal recognition pa 40.3 1.6E+02 0.0036 29.3 8.8 39 5-43 116-154 (318)
318 COG0801 FolK 7,8-dihydro-6-hyd 40.1 57 0.0012 28.9 4.8 34 311-344 3-36 (160)
319 PRK02231 ppnK inorganic polyph 39.9 43 0.00094 32.5 4.5 57 378-456 37-97 (272)
320 TIGR01005 eps_transp_fam exopo 39.9 2.9E+02 0.0063 31.1 11.8 39 4-42 546-586 (754)
321 TIGR01285 nifN nitrogenase mol 39.7 1.3E+02 0.0028 31.4 8.3 78 18-135 321-398 (432)
322 PRK08533 flagellar accessory p 39.4 2.5E+02 0.0055 26.3 9.6 44 5-48 26-69 (230)
323 PRK13768 GTPase; Provisional 39.3 44 0.00096 32.0 4.5 37 6-42 5-41 (253)
324 PRK14569 D-alanyl-alanine synt 39.3 58 0.0013 32.0 5.4 39 1-39 1-43 (296)
325 TIGR00345 arsA arsenite-activa 38.9 1.7E+02 0.0037 28.5 8.7 23 21-43 3-25 (284)
326 PRK13982 bifunctional SbtC-lik 38.9 40 0.00087 35.5 4.3 39 3-41 256-306 (475)
327 PF07355 GRDB: Glycine/sarcosi 38.9 48 0.001 33.2 4.6 39 92-133 68-116 (349)
328 COG2861 Uncharacterized protei 38.6 3E+02 0.0065 26.1 9.5 39 90-133 137-178 (250)
329 TIGR00421 ubiX_pad polyprenyl 38.5 41 0.00089 30.5 3.9 42 6-48 2-43 (181)
330 COG2109 BtuR ATP:corrinoid ade 38.4 3.2E+02 0.0068 25.1 10.8 99 5-118 30-133 (198)
331 TIGR02852 spore_dpaB dipicolin 38.3 52 0.0011 30.0 4.5 40 5-44 2-41 (187)
332 TIGR00682 lpxK tetraacyldisacc 38.3 1.3E+02 0.0029 29.8 7.8 35 9-43 36-70 (311)
333 TIGR01501 MthylAspMutase methy 38.2 90 0.002 26.7 5.7 47 3-49 1-47 (134)
334 PF06564 YhjQ: YhjQ protein; 38.2 3.4E+02 0.0073 25.9 10.1 30 10-39 9-38 (243)
335 TIGR00639 PurN phosphoribosylg 38.2 3.1E+02 0.0068 24.9 10.6 34 4-40 1-36 (190)
336 PRK03708 ppnK inorganic polyph 38.0 51 0.0011 32.1 4.7 52 386-457 58-112 (277)
337 TIGR01283 nifE nitrogenase mol 37.7 2E+02 0.0044 30.2 9.6 26 106-134 394-419 (456)
338 PRK04330 hypothetical protein; 37.6 1.3E+02 0.0029 23.6 5.9 57 445-504 12-72 (88)
339 PRK05920 aromatic acid decarbo 37.6 64 0.0014 29.8 5.1 44 4-48 4-47 (204)
340 PRK12311 rpsB 30S ribosomal pr 37.5 1.1E+02 0.0024 30.6 6.9 35 106-140 151-187 (326)
341 TIGR02195 heptsyl_trn_II lipop 37.2 2.3E+02 0.005 28.1 9.5 84 19-136 195-278 (334)
342 PF02571 CbiJ: Precorrin-6x re 37.1 1.9E+02 0.0041 27.7 8.3 93 4-135 1-100 (249)
343 PRK06935 2-deoxy-D-gluconate 3 37.0 2E+02 0.0044 27.0 8.8 34 5-41 16-49 (258)
344 COG0300 DltE Short-chain dehyd 36.4 1.5E+02 0.0033 28.7 7.5 21 20-40 19-39 (265)
345 PRK06029 3-octaprenyl-4-hydrox 36.4 59 0.0013 29.6 4.6 44 5-49 3-47 (185)
346 PRK10490 sensor protein KdpD; 36.2 1.5E+02 0.0033 34.2 8.9 38 3-40 24-61 (895)
347 PRK15062 hydrogenase isoenzyme 36.2 1.3E+02 0.0028 30.4 7.2 146 301-473 123-293 (364)
348 PLN02948 phosphoribosylaminoim 35.9 4.3E+02 0.0093 28.8 11.8 144 308-477 409-562 (577)
349 PF02585 PIG-L: GlcNAc-PI de-N 35.7 1.3E+02 0.0028 25.0 6.4 22 19-40 13-34 (128)
350 TIGR03877 thermo_KaiC_1 KaiC d 35.6 1.5E+02 0.0033 27.9 7.5 44 5-48 23-66 (237)
351 PF01210 NAD_Gly3P_dh_N: NAD-d 35.6 31 0.00068 30.3 2.6 32 5-41 1-32 (157)
352 PLN02935 Bifunctional NADH kin 35.3 76 0.0016 33.6 5.6 54 385-458 262-319 (508)
353 TIGR02990 ectoine_eutA ectoine 35.0 2.1E+02 0.0046 27.1 8.3 101 17-136 105-214 (239)
354 PRK05579 bifunctional phosphop 34.9 63 0.0014 33.4 5.0 46 2-48 5-50 (399)
355 PF09314 DUF1972: Domain of un 34.8 3.5E+02 0.0075 24.6 9.2 42 18-66 21-62 (185)
356 PF04244 DPRP: Deoxyribodipyri 34.5 49 0.0011 31.2 3.8 25 16-40 47-71 (224)
357 PRK07414 cob(I)yrinic acid a,c 34.3 3.5E+02 0.0076 24.4 10.7 100 4-118 22-126 (178)
358 PRK12446 undecaprenyldiphospho 34.2 2E+02 0.0043 29.1 8.5 31 380-410 86-119 (352)
359 cd02065 B12-binding_like B12 b 34.1 97 0.0021 25.5 5.3 44 6-49 2-45 (125)
360 PF10649 DUF2478: Protein of u 33.9 1.8E+02 0.0038 25.8 6.9 106 12-137 7-132 (159)
361 PF06506 PrpR_N: Propionate ca 33.7 80 0.0017 28.3 5.0 111 15-141 17-156 (176)
362 cd01017 AdcA Metal binding pro 33.6 3.3E+02 0.0071 26.4 9.7 43 92-137 208-252 (282)
363 PRK06179 short chain dehydroge 33.4 64 0.0014 30.7 4.7 37 1-40 1-37 (270)
364 PRK10916 ADP-heptose:LPS hepto 33.3 2.9E+02 0.0062 27.6 9.6 86 19-136 201-288 (348)
365 cd01421 IMPCH Inosine monophos 33.3 1.7E+02 0.0037 26.6 6.9 38 18-66 11-48 (187)
366 PRK04296 thymidine kinase; Pro 33.2 96 0.0021 28.2 5.5 35 5-39 3-38 (190)
367 TIGR00750 lao LAO/AO transport 33.1 3.4E+02 0.0074 26.6 9.8 39 5-43 36-74 (300)
368 TIGR01761 thiaz-red thiazoliny 33.1 1.9E+02 0.0041 29.2 8.0 89 328-426 15-112 (343)
369 TIGR01509 HAD-SF-IA-v3 haloaci 33.0 2.8E+02 0.0061 24.2 8.6 24 20-43 90-113 (183)
370 cd07062 Peptidase_S66_mccF_lik 32.8 90 0.0019 30.9 5.6 74 322-414 50-125 (308)
371 PF01012 ETF: Electron transfe 32.7 1.3E+02 0.0029 26.3 6.2 97 18-136 18-122 (164)
372 TIGR00521 coaBC_dfp phosphopan 32.6 70 0.0015 32.9 4.9 48 1-49 1-48 (390)
373 PLN02939 transferase, transfer 32.6 73 0.0016 36.6 5.3 40 3-42 481-526 (977)
374 PRK06270 homoserine dehydrogen 32.5 2.5E+02 0.0054 28.2 8.8 40 376-415 80-131 (341)
375 PF10093 DUF2331: Uncharacteri 32.5 3.3E+02 0.0071 27.8 9.5 196 277-490 146-373 (374)
376 PRK14077 pnk inorganic polypho 32.4 95 0.0021 30.4 5.6 53 386-458 65-121 (287)
377 PRK11914 diacylglycerol kinase 32.4 1.1E+02 0.0023 30.1 6.2 69 323-413 24-96 (306)
378 PRK00005 fmt methionyl-tRNA fo 31.9 3.7E+02 0.0079 26.6 9.8 31 4-39 1-31 (309)
379 PRK14478 nitrogenase molybdenu 31.6 2.1E+02 0.0045 30.3 8.4 25 106-133 392-416 (475)
380 PRK13934 stationary phase surv 31.6 89 0.0019 30.2 5.1 31 16-47 12-42 (266)
381 PRK00911 dihydroxy-acid dehydr 31.6 2.3E+02 0.0049 30.5 8.5 34 106-139 108-145 (552)
382 TIGR01281 DPOR_bchL light-inde 31.4 75 0.0016 30.5 4.7 37 4-40 1-37 (268)
383 TIGR02237 recomb_radB DNA repa 31.3 4E+02 0.0087 24.1 10.8 44 6-49 15-59 (209)
384 COG3640 CooC CO dehydrogenase 31.2 4.7E+02 0.01 24.9 10.4 45 4-48 1-46 (255)
385 TIGR01829 AcAcCoA_reduct aceto 31.2 2.1E+02 0.0045 26.4 7.7 31 6-39 2-32 (242)
386 PRK06180 short chain dehydroge 31.1 74 0.0016 30.6 4.7 37 1-40 1-37 (277)
387 cd01968 Nitrogenase_NifE_I Nit 31.1 2.6E+02 0.0057 28.8 9.0 26 106-134 355-380 (410)
388 PRK08226 short chain dehydroge 31.1 2.6E+02 0.0055 26.3 8.4 34 5-41 7-40 (263)
389 PF01297 TroA: Periplasmic sol 31.0 1.9E+02 0.0042 27.4 7.5 80 32-137 150-231 (256)
390 PRK08057 cobalt-precorrin-6x r 31.0 2.4E+02 0.0051 27.0 7.9 90 4-135 3-99 (248)
391 PRK11199 tyrA bifunctional cho 30.8 2.8E+02 0.0061 28.3 9.0 32 4-40 99-131 (374)
392 PRK08589 short chain dehydroge 30.8 2.8E+02 0.0061 26.4 8.7 34 4-40 6-39 (272)
393 PRK02649 ppnK inorganic polyph 30.7 89 0.0019 30.9 5.1 54 385-458 68-125 (305)
394 TIGR02699 archaeo_AfpA archaeo 30.5 76 0.0016 28.6 4.2 33 15-47 10-44 (174)
395 PRK13896 cobyrinic acid a,c-di 30.5 6.5E+02 0.014 26.3 11.7 35 5-39 3-38 (433)
396 PF02826 2-Hacid_dh_C: D-isome 30.5 44 0.00096 30.0 2.8 105 308-453 36-143 (178)
397 cd01715 ETF_alpha The electron 30.4 3.8E+02 0.0082 23.6 9.8 31 106-136 82-115 (168)
398 PRK12724 flagellar biosynthesi 30.3 2.9E+02 0.0062 28.8 8.8 43 6-48 226-269 (432)
399 TIGR02700 flavo_MJ0208 archaeo 30.2 75 0.0016 30.1 4.4 43 6-48 2-46 (234)
400 TIGR02113 coaC_strep phosphopa 30.1 63 0.0014 29.2 3.6 42 5-47 2-43 (177)
401 PF01695 IstB_IS21: IstB-like 30.1 57 0.0012 29.4 3.4 44 3-46 47-90 (178)
402 COG0287 TyrA Prephenate dehydr 29.8 4.9E+02 0.011 25.4 10.0 42 3-49 3-44 (279)
403 PRK08155 acetolactate synthase 29.8 98 0.0021 33.5 5.8 82 325-412 14-109 (564)
404 PRK01911 ppnK inorganic polyph 29.5 1.1E+02 0.0025 30.0 5.6 53 386-458 65-121 (292)
405 PRK08199 thiamine pyrophosphat 29.3 2.6E+02 0.0056 30.2 8.9 26 386-411 72-103 (557)
406 cd01141 TroA_d Periplasmic bin 29.2 82 0.0018 28.2 4.4 30 106-135 68-99 (186)
407 PRK06276 acetolactate synthase 29.2 2E+02 0.0043 31.4 8.0 27 386-412 64-96 (586)
408 CHL00072 chlL photochlorophyll 29.1 93 0.002 30.5 5.0 39 4-42 1-39 (290)
409 PRK03372 ppnK inorganic polyph 29.0 1.2E+02 0.0026 30.1 5.7 53 386-458 73-129 (306)
410 cd01018 ZntC Metal binding pro 29.0 5.2E+02 0.011 24.7 11.2 44 92-138 205-250 (266)
411 TIGR01990 bPGM beta-phosphoglu 29.0 3.6E+02 0.0079 23.6 8.6 23 20-42 92-114 (185)
412 PRK09302 circadian clock prote 28.8 2.4E+02 0.0052 30.1 8.5 45 5-49 275-319 (509)
413 PRK04539 ppnK inorganic polyph 28.7 1.5E+02 0.0033 29.2 6.3 53 386-458 69-125 (296)
414 PRK08177 short chain dehydroge 28.7 3.2E+02 0.007 25.0 8.5 23 19-41 13-35 (225)
415 TIGR00118 acolac_lg acetolacta 28.6 2.3E+02 0.0049 30.6 8.4 27 386-412 65-97 (558)
416 TIGR01918 various_sel_PB selen 28.6 84 0.0018 32.4 4.5 40 93-135 65-114 (431)
417 TIGR01917 gly_red_sel_B glycin 28.6 84 0.0018 32.4 4.5 40 93-135 65-114 (431)
418 cd01452 VWA_26S_proteasome_sub 28.5 2.2E+02 0.0049 25.9 7.0 65 4-69 108-176 (187)
419 TIGR01428 HAD_type_II 2-haloal 28.4 4.3E+02 0.0093 23.6 9.9 96 21-136 98-193 (198)
420 KOG0081 GTPase Rab27, small G 28.3 1.1E+02 0.0025 26.9 4.6 45 93-137 109-164 (219)
421 TIGR01470 cysG_Nterm siroheme 28.2 4.8E+02 0.01 24.0 13.6 145 309-473 10-164 (205)
422 PRK06079 enoyl-(acyl carrier p 28.2 3.4E+02 0.0074 25.5 8.7 35 3-39 6-41 (252)
423 cd01125 repA Hexameric Replica 28.0 1.9E+02 0.0042 27.1 6.9 42 7-48 5-58 (239)
424 PRK07525 sulfoacetaldehyde ace 28.0 2.5E+02 0.0054 30.6 8.6 27 386-412 69-101 (588)
425 cd03789 GT1_LPS_heptosyltransf 27.8 4.1E+02 0.009 25.4 9.4 86 18-136 140-225 (279)
426 PRK06456 acetolactate synthase 27.8 2.9E+02 0.0063 29.9 9.0 27 386-412 69-101 (572)
427 cd01840 SGNH_hydrolase_yrhL_li 27.8 1.5E+02 0.0033 25.5 5.6 37 309-346 51-87 (150)
428 PF02558 ApbA: Ketopantoate re 27.7 84 0.0018 27.0 4.0 29 21-49 11-39 (151)
429 PRK06719 precorrin-2 dehydroge 27.6 1.1E+02 0.0024 26.9 4.8 34 3-41 13-46 (157)
430 COG2210 Peroxiredoxin family p 27.6 1.2E+02 0.0027 25.9 4.7 41 8-48 8-48 (137)
431 cd02034 CooC The accessory pro 27.6 1.3E+02 0.0027 25.0 4.8 37 5-41 1-37 (116)
432 PF00282 Pyridoxal_deC: Pyrido 27.5 1E+02 0.0023 31.4 5.2 70 386-457 104-191 (373)
433 TIGR00147 lipid kinase, YegS/R 27.3 1.8E+02 0.004 28.2 6.8 28 386-413 58-91 (293)
434 cd02032 Bchl_like This family 27.2 95 0.0021 29.8 4.7 37 4-40 1-37 (267)
435 PHA02754 hypothetical protein; 27.1 89 0.0019 22.3 3.1 24 451-474 7-30 (67)
436 PRK09444 pntB pyridine nucleot 27.0 94 0.002 32.3 4.6 37 3-41 306-347 (462)
437 PF13499 EF-hand_7: EF-hand do 26.9 52 0.0011 23.6 2.2 55 435-490 10-64 (66)
438 cd01985 ETF The electron trans 26.8 4.5E+02 0.0098 23.3 10.1 30 106-135 90-122 (181)
439 COG0467 RAD55 RecA-superfamily 26.8 1.4E+02 0.003 28.6 5.7 46 5-50 25-70 (260)
440 PRK12921 2-dehydropantoate 2-r 26.7 1.2E+02 0.0025 29.7 5.3 40 4-48 1-40 (305)
441 PRK03378 ppnK inorganic polyph 26.6 1.2E+02 0.0026 29.8 5.2 53 386-458 64-120 (292)
442 PRK13604 luxD acyl transferase 26.6 1.2E+02 0.0025 30.1 5.1 34 4-37 37-70 (307)
443 KOG2825 Putative arsenite-tran 26.3 6E+02 0.013 24.6 9.8 41 4-44 19-60 (323)
444 PRK07206 hypothetical protein; 26.3 2.6E+02 0.0057 28.7 8.1 32 5-41 4-35 (416)
445 PRK08322 acetolactate synthase 25.9 2.7E+02 0.0059 29.9 8.4 27 386-412 64-96 (547)
446 PRK08527 acetolactate synthase 25.8 2.7E+02 0.0058 30.2 8.3 27 386-412 67-99 (563)
447 PRK12825 fabG 3-ketoacyl-(acyl 25.8 3.6E+02 0.0078 24.7 8.4 32 5-40 8-39 (249)
448 PRK13057 putative lipid kinase 25.7 1.4E+02 0.003 29.1 5.5 66 325-413 13-82 (287)
449 PF09001 DUF1890: Domain of un 25.6 68 0.0015 27.5 2.8 35 15-49 11-45 (139)
450 PRK06522 2-dehydropantoate 2-r 25.6 1E+02 0.0022 30.0 4.7 31 4-39 1-31 (304)
451 COG1606 ATP-utilizing enzymes 25.5 1.7E+02 0.0036 28.1 5.6 113 9-129 22-141 (269)
452 PRK12481 2-deoxy-D-gluconate 3 25.4 3.6E+02 0.0078 25.3 8.3 33 4-39 8-40 (251)
453 PRK07710 acetolactate synthase 25.4 2.3E+02 0.0049 30.8 7.6 27 386-412 79-111 (571)
454 cd03146 GAT1_Peptidase_E Type 25.3 5.1E+02 0.011 23.9 9.0 47 296-344 17-66 (212)
455 PF05693 Glycogen_syn: Glycoge 25.2 90 0.002 33.8 4.2 38 109-146 143-183 (633)
456 PRK13869 plasmid-partitioning 24.9 1.1E+02 0.0023 31.7 4.7 39 3-41 120-160 (405)
457 COG0859 RfaF ADP-heptose:LPS h 24.7 3.3E+02 0.0072 27.1 8.2 99 4-137 176-279 (334)
458 COG1797 CobB Cobyrinic acid a, 24.7 77 0.0017 32.8 3.5 32 6-37 3-35 (451)
459 PF02056 Glyco_hydro_4: Family 24.7 5.3E+02 0.012 23.4 10.7 113 17-143 41-175 (183)
460 PRK14075 pnk inorganic polypho 24.6 2.2E+02 0.0048 27.3 6.6 52 386-457 42-94 (256)
461 PRK03501 ppnK inorganic polyph 24.6 1.7E+02 0.0037 28.3 5.7 53 387-458 41-98 (264)
462 PTZ00445 p36-lilke protein; Pr 24.5 5.5E+02 0.012 24.0 8.6 111 15-137 74-207 (219)
463 PRK05234 mgsA methylglyoxal sy 24.4 4.6E+02 0.01 22.6 10.0 99 3-136 4-114 (142)
464 PRK13982 bifunctional SbtC-lik 24.4 1.2E+02 0.0026 32.1 4.9 46 3-49 70-115 (475)
465 PF05673 DUF815: Protein of un 24.3 6.3E+02 0.014 24.2 10.6 138 324-494 91-247 (249)
466 COG2099 CobK Precorrin-6x redu 24.3 3.5E+02 0.0075 26.0 7.5 91 4-135 3-100 (257)
467 COG2159 Predicted metal-depend 24.3 3.1E+02 0.0067 26.9 7.6 87 297-395 116-202 (293)
468 PRK11269 glyoxylate carboligas 24.3 3.5E+02 0.0075 29.5 8.8 27 386-412 69-101 (591)
469 TIGR00173 menD 2-succinyl-5-en 24.2 2.9E+02 0.0063 28.7 7.9 26 386-411 64-95 (432)
470 cd01983 Fer4_NifH The Fer4_Nif 23.9 1.6E+02 0.0035 22.2 4.8 33 6-38 2-34 (99)
471 PF06506 PrpR_N: Propionate ca 23.9 40 0.00087 30.3 1.2 33 382-415 31-63 (176)
472 TIGR01862 N2-ase-Ialpha nitrog 23.7 5.7E+02 0.012 26.7 9.9 26 106-134 386-411 (443)
473 PF10933 DUF2827: Protein of u 23.7 2.5E+02 0.0055 28.4 6.7 82 373-473 259-350 (364)
474 TIGR02247 HAD-1A3-hyp Epoxide 23.4 3.8E+02 0.0082 24.3 7.8 31 107-138 169-199 (211)
475 PF03853 YjeF_N: YjeF-related 23.4 1.5E+02 0.0032 26.4 4.8 35 3-38 25-59 (169)
476 PRK15469 ghrA bifunctional gly 23.3 6E+02 0.013 25.2 9.5 104 309-452 137-241 (312)
477 PF04748 Polysacc_deac_2: Dive 23.3 3.4E+02 0.0073 25.3 7.3 39 90-133 105-146 (213)
478 PRK08993 2-deoxy-D-gluconate 3 23.3 5.3E+02 0.011 24.1 9.0 34 5-41 11-44 (253)
479 PF05225 HTH_psq: helix-turn-h 23.3 1.4E+02 0.003 20.1 3.5 24 443-466 1-25 (45)
480 CHL00067 rps2 ribosomal protei 23.2 2.9E+02 0.0063 26.0 6.9 35 106-140 160-196 (230)
481 PRK06835 DNA replication prote 23.1 1.1E+02 0.0023 30.7 4.2 44 4-47 184-227 (329)
482 cd01977 Nitrogenase_VFe_alpha 23.0 3.8E+02 0.0082 27.7 8.4 26 106-134 357-382 (415)
483 PRK05784 phosphoribosylamine-- 23.0 2.6E+02 0.0056 29.8 7.2 34 4-42 1-36 (486)
484 PF14626 RNase_Zc3h12a_2: Zc3h 22.9 24 0.00051 29.3 -0.4 32 17-48 9-40 (122)
485 PRK12744 short chain dehydroge 22.9 3.8E+02 0.0081 25.1 7.9 31 5-38 9-39 (257)
486 TIGR00110 ilvD dihydroxy-acid 22.9 4.2E+02 0.0092 28.4 8.6 34 106-139 88-125 (535)
487 TIGR03018 pepcterm_TyrKin exop 22.8 5.8E+02 0.013 23.2 13.7 39 3-41 34-75 (207)
488 cd00672 CysRS_core catalytic c 22.8 5.3E+02 0.012 23.9 8.6 92 14-133 36-131 (213)
489 PF03308 ArgK: ArgK protein; 22.8 1.9E+02 0.004 28.0 5.5 118 4-137 29-153 (266)
490 PRK08125 bifunctional UDP-gluc 22.6 5.6E+02 0.012 28.3 10.2 31 4-39 1-31 (660)
491 PRK11064 wecC UDP-N-acetyl-D-m 22.6 1.2E+02 0.0025 31.6 4.5 35 1-40 1-35 (415)
492 COG1763 MobB Molybdopterin-gua 22.5 1.6E+02 0.0034 26.2 4.7 38 4-41 2-40 (161)
493 PRK00771 signal recognition pa 22.5 2.1E+02 0.0044 30.0 6.3 41 4-44 96-136 (437)
494 cd07037 TPP_PYR_MenD Pyrimidin 22.4 81 0.0017 28.0 2.8 26 387-412 62-93 (162)
495 TIGR00745 apbA_panE 2-dehydrop 22.4 90 0.0019 30.2 3.5 28 22-49 5-32 (293)
496 TIGR01668 YqeG_hyp_ppase HAD s 22.4 5.4E+02 0.012 22.6 9.1 91 20-137 48-138 (170)
497 PRK05579 bifunctional phosphop 22.2 1.7E+02 0.0036 30.3 5.5 22 20-41 217-238 (399)
498 CHL00099 ilvB acetohydroxyacid 22.2 4.4E+02 0.0096 28.6 9.1 27 386-412 77-109 (585)
499 PRK11889 flhF flagellar biosyn 22.1 9.1E+02 0.02 25.2 13.4 40 4-43 242-281 (436)
500 cd01019 ZnuA Zinc binding prot 22.1 5.8E+02 0.013 24.8 9.2 43 92-137 216-260 (286)
No 1
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=1.1e-64 Score=523.76 Aligned_cols=433 Identities=33% Similarity=0.672 Sum_probs=340.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHH
Q 010617 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLI 82 (506)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 82 (506)
+.||+++|+|++||++|++.||+.|+.+|++||+++++.+...+.+...+ .++++|+.+|++.+.+ ...++..+.
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~----~~~i~~v~lp~g~~~~-~~~~~~~l~ 80 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDP----KLGITFMSISDGQDDD-PPRDFFSIE 80 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCC----CCCEEEEECCCCCCCC-ccccHHHHH
Confidence 56999999999999999999999999999999999999887766554211 1369999999876532 122344455
Q ss_pred HHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHhhccccccCCCCCCCCC
Q 010617 83 EKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSHGM 162 (506)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (506)
..+...+.+.++++++.+... .+++|||+|++..|+.++|+++|||++.|+++.+..+....+.+.+...+..+..
T Consensus 81 ~a~~~~~~~~l~~ll~~l~~~--~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~-- 156 (448)
T PLN02562 81 NSMENTMPPQLERLLHKLDED--GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISET-- 156 (448)
T ss_pred HHHHHhchHHHHHHHHHhcCC--CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccccc--
Confidence 555556788899999887531 2458999999999999999999999999999999888877665543322211100
Q ss_pred CccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCCCCCcccccccccCCCchhHHHHHHHH
Q 010617 163 IPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLE 242 (506)
Q Consensus 163 ~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 242 (506)
+.+........+|+++.+...+++. +...........+.+.
T Consensus 157 --------------------------------------~~~~~~~~~~~~Pg~~~l~~~dl~~-~~~~~~~~~~~~~~~~ 197 (448)
T PLN02562 157 --------------------------------------GCPRQLEKICVLPEQPLLSTEDLPW-LIGTPKARKARFKFWT 197 (448)
T ss_pred --------------------------------------cccccccccccCCCCCCCChhhCcc-hhcCCCcchHHHHHHH
Confidence 1111111122567877777788873 3222211223345555
Q ss_pred HHHHhhccccEEEEcCcccccccccc---------cCCceeeecccccCCCCCCCCCCCccccchhhhhhhcCCCCceEE
Q 010617 243 RNTRAMIAVNFHFCNSTYELESEAFT---------TFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVY 313 (506)
Q Consensus 243 ~~~~~~~~~~~~l~ns~~~le~~~~~---------~~p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~ 313 (506)
+..+...+++.+++||+.+||+.... ..|+++.|||++............++.+.+|.+||+.+++++|||
T Consensus 198 ~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvy 277 (448)
T PLN02562 198 RTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNPQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIY 277 (448)
T ss_pred HHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCCCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEE
Confidence 66667788999999999999985322 357899999998654211000112455677889999998889999
Q ss_pred EEeCccc-cCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEeccchhhhhcCCCcceEEec
Q 010617 314 VSFGSFT-ILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLSH 392 (506)
Q Consensus 314 vs~GS~~-~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~vpq~~lL~h~~v~~~ItH 392 (506)
|||||.. .++.+++++++.+|+.++++|||++... ..+.+|++|.++.++|+++.+|+||.+||+|++|++||||
T Consensus 278 vsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~----~~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH 353 (448)
T PLN02562 278 ISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPV----WREGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTH 353 (448)
T ss_pred EEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCC----chhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEec
Confidence 9999985 6789999999999999999999999753 2235889999999999999999999999999999999999
Q ss_pred cCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 010617 393 CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAM 472 (506)
Q Consensus 393 gG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~~~r~~a~~l~~~~~ 472 (506)
|||||++||+++|||||++|+++||+.||+++++.+|+|+.+. .++.++|.++|+++|.|++||+||++++++++
T Consensus 354 ~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~-----~~~~~~l~~~v~~~l~~~~~r~~a~~l~~~~~ 428 (448)
T PLN02562 354 CGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRIS-----GFGQKEVEEGLRKVMEDSGMGERLMKLRERAM 428 (448)
T ss_pred CcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeC-----CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999986469998873 47999999999999999999999999999999
Q ss_pred hhhhcCCChHHHHHHHHHHHH
Q 010617 473 SSVREGGSSYKTFQNFLQWVK 493 (506)
Q Consensus 473 ~~~~~gg~~~~~~~~~~~~~~ 493 (506)
++ .+||||.+++++||++++
T Consensus 429 ~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 429 GE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred hc-CCCCCHHHHHHHHHHHhC
Confidence 86 567999999999999874
No 2
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=3.2e-63 Score=511.12 Aligned_cols=443 Identities=23% Similarity=0.431 Sum_probs=336.1
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCcch-hHHHHhhhcCCCCCCCeEEEecCCCCCCC--CCc
Q 010617 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHG--FRVTFVNTDYNH-KRVVESLQGKNYLGEQIHLVSIPDGMEPW--EDR 75 (506)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~-~~v~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~ 75 (506)
|+++||+++|+|++||++|++.||+.|+.+| ..|||++++.+. ..+.....+.....++++|..+|+..... ...
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 80 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGT 80 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccc
Confidence 8999999999999999999999999999998 999999998765 33332222111112369999999643211 122
Q ss_pred cCHHHHHHHHHHhCcH----HHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHhhcccc
Q 010617 76 NDLGKLIEKCLQVMPG----KLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKL 151 (506)
Q Consensus 76 ~~~~~~~~~~~~~~~~----~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~ 151 (506)
.+...++..+.+.+.+ .+.++++++.. .+.+++|||+|.+..|+..+|+++|||.+.|+++++..+....+.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~ 159 (468)
T PLN02207 81 QSVEAYVYDVIEKNIPLVRNIVMDILSSLAL-DGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADR 159 (468)
T ss_pred cCHHHHHHHHHHhcchhHHHHHHHHHHHhcc-CCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhc
Confidence 3444444444445533 34555544321 112349999999999999999999999999999999888877765433
Q ss_pred ccCCCCCCCCCCccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCC-CCCCcccccccccCC
Q 010617 152 IDDGIIDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKM-PEMNSRDCFWAHIGD 230 (506)
Q Consensus 152 ~~~~~~~~~~~~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 230 (506)
.... . ..+ .+... ....+|++ +.+...+++ .+...
T Consensus 160 ~~~~----~---------~~~-----------------------------~~~~~-~~~~vPgl~~~l~~~dlp-~~~~~ 195 (468)
T PLN02207 160 HSKD----T---------SVF-----------------------------VRNSE-EMLSIPGFVNPVPANVLP-SALFV 195 (468)
T ss_pred cccc----c---------ccC-----------------------------cCCCC-CeEECCCCCCCCChHHCc-chhcC
Confidence 2110 0 000 00001 11257887 578888888 33321
Q ss_pred CchhHHHHHHHHHHHHhhccccEEEEcCcccccccc------cccCCceeeecccccCCCCCCCCCCCccccchhhhhhh
Q 010617 231 WTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEA------FTTFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLD 304 (506)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~------~~~~p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~l~ 304 (506)
... ...+.+..+.+.+++++|+||+++||++. ++..|+++.|||++.......+ ......+++|.+|||
T Consensus 196 ~~~----~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~~~~p~v~~VGPl~~~~~~~~~-~~~~~~~~~~~~WLd 270 (468)
T PLN02207 196 EDG----YDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLDEQNYPSVYAVGPIFDLKAQPHP-EQDLARRDELMKWLD 270 (468)
T ss_pred Ccc----HHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHhccCCCcEEEecCCcccccCCCC-ccccchhhHHHHHHh
Confidence 111 23334444567889999999999999873 2455789999999864321110 000123467999999
Q ss_pred cCCCCceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEeccchhhhhcCC
Q 010617 305 QQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHP 384 (506)
Q Consensus 305 ~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~vpq~~lL~h~ 384 (506)
.+++++||||||||...++.+++++++.+|+.++++|||+++..... ..+-+|++|.++.++|+++.+|+||.+||+|+
T Consensus 271 ~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~~-~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~ 349 (468)
T PLN02207 271 DQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEVT-NDDLLPEGFLDRVSGRGMICGWSPQVEILAHK 349 (468)
T ss_pred cCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCcc-ccccCCHHHHhhcCCCeEEEEeCCHHHHhccc
Confidence 99888999999999999999999999999999999999999853111 12458999999999999999999999999999
Q ss_pred CcceEEeccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecC----CCCCcCHHHHHHHHHHHhC--Ch
Q 010617 385 SIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRD----EGGIITREEIKNKVDQVLG--NQ 458 (506)
Q Consensus 385 ~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~----~~~~~~~~~l~~ai~~vl~--d~ 458 (506)
+|++|||||||||++||+++|||||++|+++||+.||+++++.+|+|+.+..+ .++.++.++|.++|+++|. ++
T Consensus 350 ~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~ 429 (468)
T PLN02207 350 AVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKDNN 429 (468)
T ss_pred ccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhcchH
Confidence 99999999999999999999999999999999999999877756999987532 1234699999999999997 57
Q ss_pred HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHh
Q 010617 459 DFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKT 494 (506)
Q Consensus 459 ~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~ 494 (506)
+||+||+++++++++|+.+||+|+.++++|+++++.
T Consensus 430 ~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~~ 465 (468)
T PLN02207 430 VVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVIG 465 (468)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999875
No 3
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=2.5e-63 Score=510.97 Aligned_cols=432 Identities=27% Similarity=0.515 Sum_probs=339.7
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcc-hhHHHHhhhcCCCCCCCeEEEecCCCCCCCC--Ccc
Q 010617 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYN-HKRVVESLQGKNYLGEQIHLVSIPDGMEPWE--DRN 76 (506)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~-~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~ 76 (506)
|.+.||+++|+|++||++|++.||+.|+. +|+.|||++++.+ ...+.+ +. ...++++|+.++++++.+. ...
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~---~~-~~~~~i~~~~i~dglp~g~~~~~~ 76 (455)
T PLN02152 1 MAPPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIP---NH-NNVENLSFLTFSDGFDDGVISNTD 76 (455)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhc---cC-CCCCCEEEEEcCCCCCCccccccc
Confidence 78889999999999999999999999996 7999999999854 222111 11 1123699999998877652 234
Q ss_pred CHHHHHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHhhccccccCCC
Q 010617 77 DLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGI 156 (506)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~ 156 (506)
+...++....+.+.+.++++++++...+ .+++|||+|.+..|+.++|+++|||.+.|++++++.+..+++.+..
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~-~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~----- 150 (455)
T PLN02152 77 DVQNRLVNFERNGDKALSDFIEANLNGD-SPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTG----- 150 (455)
T ss_pred cHHHHHHHHHHhccHHHHHHHHHhhccC-CCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhcc-----
Confidence 5556666677788889999998865322 3569999999999999999999999999999999988876553210
Q ss_pred CCCCCCCccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCCCCCcccccccccCCCchhHH
Q 010617 157 IDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKI 236 (506)
Q Consensus 157 ~~~~~~~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 236 (506)
. .....+|+++.+..++++ .+.........
T Consensus 151 ---------------------------------------------~----~~~~~iPglp~l~~~dlp-~~~~~~~~~~~ 180 (455)
T PLN02152 151 ---------------------------------------------N----NSVFEFPNLPSLEIRDLP-SFLSPSNTNKA 180 (455)
T ss_pred ---------------------------------------------C----CCeeecCCCCCCchHHCc-hhhcCCCCchh
Confidence 0 011247777777788888 44332222333
Q ss_pred HHHHHHHHHHhhc--cccEEEEcCcccccccccccCC--ceeeecccccCCC-CCCCCCC--C-ccccchhhhhhhcCCC
Q 010617 237 FFDLLERNTRAMI--AVNFHFCNSTYELESEAFTTFP--ELLPIGPLLASNR-LGNTAGY--F-WCEDSNCLKWLDQQQP 308 (506)
Q Consensus 237 ~~~~~~~~~~~~~--~~~~~l~ns~~~le~~~~~~~p--~v~~VGpl~~~~~-~~~~~~~--~-~~~~~~l~~~l~~~~~ 308 (506)
+.+.+.+..+... .++.+++||+.+||....+... .++.|||+..... .....+. . +..+.++.+|||.+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~ 260 (455)
T PLN02152 181 AQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPNIEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTE 260 (455)
T ss_pred HHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhcCCEEEEcccCccccccccccCccccccccchHHHHHhhCCCC
Confidence 3444445555443 3569999999999998877763 5999999975321 0000000 1 2335689999999988
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCC------CCC--CCCCChhhHHhhcCCeEEEeccchhhh
Q 010617 309 SSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDIT------TDA--NDRYPEGFQERVAARGQMISWAPQLRV 380 (506)
Q Consensus 309 ~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~------~~~--~~~lp~~~~~~~~~n~~v~~~vpq~~l 380 (506)
++||||||||...++.+++++++.+|+.++++|||++..... ... ...+|++|.++.++|+++.+|+||.+|
T Consensus 261 ~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~i 340 (455)
T PLN02152 261 SSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEV 340 (455)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccccccccccccccccchhHHHhccCCeEEEeeCCHHHH
Confidence 899999999999999999999999999999999999975311 000 113578999999999999999999999
Q ss_pred hcCCCcceEEeccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCCh--
Q 010617 381 LNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ-- 458 (506)
Q Consensus 381 L~h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~-- 458 (506)
|+|++|++||||||+||++||+++|||||++|+++||+.||+++++.||+|+.+..++++.++.++|+++|+++|.|+
T Consensus 341 L~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~~~ 420 (455)
T PLN02152 341 LRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEKSV 420 (455)
T ss_pred hCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhhHH
Confidence 999999999999999999999999999999999999999999998856888877653334569999999999999765
Q ss_pred HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 010617 459 DFKARALELKEKAMSSVREGGSSYKTFQNFLQWV 492 (506)
Q Consensus 459 ~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~ 492 (506)
.||++|+++++++++++.+||++++++++|++++
T Consensus 421 ~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 421 ELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 5899999999999999999999999999999986
No 4
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.9e-63 Score=511.86 Aligned_cols=432 Identities=27% Similarity=0.519 Sum_probs=337.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCC-CCccCHHHH
Q 010617 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPW-EDRNDLGKL 81 (506)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~ 81 (506)
+.||+++|+|++||++|++.||+.|+.||+.|||++++.+... .. ....+++|..+|++++++ ........+
T Consensus 7 ~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~--~~-----~~~~~i~~~~ip~glp~~~~~~~~~~~~ 79 (451)
T PLN02410 7 RRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS--PS-----DDFTDFQFVTIPESLPESDFKNLGPIEF 79 (451)
T ss_pred CCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc--cc-----cCCCCeEEEeCCCCCCcccccccCHHHH
Confidence 4699999999999999999999999999999999999876521 10 111369999999888764 222234456
Q ss_pred HHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHhhccccccCCC-CCCC
Q 010617 82 IEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGI-IDSH 160 (506)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 160 (506)
+..+...+.+.++++++.+....+.+++|||+|++..|+.++|+++|||.+.|++++++.+....+++.++..+. .+..
T Consensus 80 ~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~ 159 (451)
T PLN02410 80 LHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLK 159 (451)
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCcc
Confidence 666666777888888887643222567999999999999999999999999999999998877666444332211 0000
Q ss_pred CCCccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCCCCCcccccccccCCCchhHHHHHH
Q 010617 161 GMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDL 240 (506)
Q Consensus 161 ~~~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 240 (506)
+... .. ...+|+++.+...+++ ...... ...+...
T Consensus 160 ----------------------------------------~~~~-~~-~~~iPg~~~~~~~dlp-~~~~~~--~~~~~~~ 194 (451)
T PLN02410 160 ----------------------------------------EPKG-QQ-NELVPEFHPLRCKDFP-VSHWAS--LESIMEL 194 (451)
T ss_pred ----------------------------------------cccc-Cc-cccCCCCCCCChHHCc-chhcCC--cHHHHHH
Confidence 0000 00 1146777666666766 222111 1122333
Q ss_pred HHHHHHhhccccEEEEcCcccccccccccC-----CceeeecccccCCCCCCCCCCCccccchhhhhhhcCCCCceEEEE
Q 010617 241 LERNTRAMIAVNFHFCNSTYELESEAFTTF-----PELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVS 315 (506)
Q Consensus 241 ~~~~~~~~~~~~~~l~ns~~~le~~~~~~~-----p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs 315 (506)
+... ..+.+++.+++||+.+||+...+.. ++++.|||++...... ...+..+.+|.+|||.+++++|||||
T Consensus 195 ~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~vGpl~~~~~~~---~~~~~~~~~~~~wLd~~~~~sVvyvs 270 (451)
T PLN02410 195 YRNT-VDKRTASSVIINTASCLESSSLSRLQQQLQIPVYPIGPLHLVASAP---TSLLEENKSCIEWLNKQKKNSVIFVS 270 (451)
T ss_pred HHHH-hhcccCCEEEEeChHHhhHHHHHHHHhccCCCEEEecccccccCCC---ccccccchHHHHHHHhCCCCcEEEEE
Confidence 3222 2356899999999999998866553 5799999998643211 01122345689999999889999999
Q ss_pred eCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCC-CC-CCCCCCChhhHHhhcCCeEEEeccchhhhhcCCCcceEEecc
Q 010617 316 FGSFTILDQVQFQELALGLELCKRPFLWVVRPDI-TT-DANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLSHC 393 (506)
Q Consensus 316 ~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~-~~-~~~~~lp~~~~~~~~~n~~v~~~vpq~~lL~h~~v~~~ItHg 393 (506)
|||...++.+++++++.+|+.++++|||+++... ++ .....+|++|.+|.++|+++.+|+||.+||+|++|++|||||
T Consensus 271 fGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~ 350 (451)
T PLN02410 271 LGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHC 350 (451)
T ss_pred ccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecC
Confidence 9999999999999999999999999999998431 11 112358999999999999999999999999999999999999
Q ss_pred CchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCCh---HHHHHHHHHHHH
Q 010617 394 GWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ---DFKARALELKEK 470 (506)
Q Consensus 394 G~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~---~~r~~a~~l~~~ 470 (506)
||||++||+++|||||++|+++||+.||+++++.||+|+.+. +.+++++|+++|+++|.|+ .||++|++++++
T Consensus 351 G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~----~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~ 426 (451)
T PLN02410 351 GWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVE----GDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQ 426 (451)
T ss_pred chhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeC----CcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987579999996 4689999999999999775 799999999999
Q ss_pred HHhhhhcCCChHHHHHHHHHHHHh
Q 010617 471 AMSSVREGGSSYKTFQNFLQWVKT 494 (506)
Q Consensus 471 ~~~~~~~gg~~~~~~~~~~~~~~~ 494 (506)
+++++.+||++..++++|+++++.
T Consensus 427 ~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 427 LRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999875
No 5
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=7.1e-63 Score=510.78 Aligned_cols=449 Identities=30% Similarity=0.532 Sum_probs=349.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhh---hcC-CC-CCCCeEEEecCCCCCCC-CCcc
Q 010617 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESL---QGK-NY-LGEQIHLVSIPDGMEPW-EDRN 76 (506)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~---~~~-~~-~~~~i~~~~~~~~~~~~-~~~~ 76 (506)
+.||+++|+|++||++|++.||+.|+.+|..|||++++.+...+.+.. .+. .. ....++|..++++++.+ +...
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~~~~~ 86 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDDPRRQ 86 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCccccc
Confidence 689999999999999999999999999999999999998776654311 110 00 11237777788877655 2233
Q ss_pred CHHHHHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHhhccccccCCC
Q 010617 77 DLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGI 156 (506)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~ 156 (506)
++..++..+.+.+.+.++++++.+.... .+++|||+|.+..|+..+|+++|||.++|++++++.+..+.+++. +.
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~----~~ 161 (480)
T PLN02555 87 DLDLYLPQLELVGKREIPNLVKRYAEQG-RPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYH----GL 161 (480)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHHhccC-CCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhh----cC
Confidence 4555666666667888888888764321 345999999999999999999999999999999999887776421 11
Q ss_pred CCCCCCCccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCCCCCcccccccccCCCchhHH
Q 010617 157 IDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKI 236 (506)
Q Consensus 157 ~~~~~~~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 236 (506)
.+.. ........ ..+|+++.+...+++ .+.........
T Consensus 162 ~~~~----------------------------------------~~~~~~~~-~~iPglp~l~~~dlp-~~~~~~~~~~~ 199 (480)
T PLN02555 162 VPFP----------------------------------------TETEPEID-VQLPCMPLLKYDEIP-SFLHPSSPYPF 199 (480)
T ss_pred CCcc----------------------------------------cccCCCce-eecCCCCCcCHhhCc-ccccCCCCchH
Confidence 0000 00000111 257888888888888 44332222334
Q ss_pred HHHHHHHHHHhhccccEEEEcCcccccccccccC---CceeeecccccCCCCC-CC-CCCCccccchhhhhhhcCCCCce
Q 010617 237 FFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF---PELLPIGPLLASNRLG-NT-AGYFWCEDSNCLKWLDQQQPSSV 311 (506)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~---p~v~~VGpl~~~~~~~-~~-~~~~~~~~~~l~~~l~~~~~~~v 311 (506)
+.+.+.+.++...+++.+++||+.+||....... ..++.|||+....... .. .+..+..+++|.+||+.+++++|
T Consensus 200 ~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sV 279 (480)
T PLN02555 200 LRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKLCPIKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSV 279 (480)
T ss_pred HHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhCCCEEEeCcccCccccccccccccccccchhHHHHHhCCCCCce
Confidence 4555556666778899999999999998866543 1389999997542211 00 01124456789999999988899
Q ss_pred EEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCC--CCCCCCChhhHHhhcCCeEEEeccchhhhhcCCCcceE
Q 010617 312 VYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITT--DANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACF 389 (506)
Q Consensus 312 V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~--~~~~~lp~~~~~~~~~n~~v~~~vpq~~lL~h~~v~~~ 389 (506)
|||||||...++.+++.+++.+++..+++|||++...... .....+|+++.++.++|+++.+|+||.+||+|++|++|
T Consensus 280 vyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~F 359 (480)
T PLN02555 280 VYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACF 359 (480)
T ss_pred eEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeE
Confidence 9999999999999999999999999999999999743111 11246899999999999999999999999999999999
Q ss_pred EeccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecC--CCCCcCHHHHHHHHHHHhCCh---HHHHHH
Q 010617 390 LSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRD--EGGIITREEIKNKVDQVLGNQ---DFKARA 464 (506)
Q Consensus 390 ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~--~~~~~~~~~l~~ai~~vl~d~---~~r~~a 464 (506)
||||||||++||+++|||||++|+++||+.||+++++.||+|+.+... +.+.++.++|.++|+++|.++ .+|+||
T Consensus 360 vtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra 439 (480)
T PLN02555 360 VTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNA 439 (480)
T ss_pred EecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHH
Confidence 999999999999999999999999999999999998877999999531 124689999999999999754 799999
Q ss_pred HHHHHHHHhhhhcCCChHHHHHHHHHHHHhcccc
Q 010617 465 LELKEKAMSSVREGGSSYKTFQNFLQWVKTNALA 498 (506)
Q Consensus 465 ~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~ 498 (506)
+++++++++|+.|||++..++++||+++.+...+
T Consensus 440 ~~l~~~a~~A~~egGSS~~~l~~~v~~i~~~~~~ 473 (480)
T PLN02555 440 LKWKEEAEAAVAEGGSSDRNFQEFVDKLVRKSVE 473 (480)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccce
Confidence 9999999999999999999999999999987543
No 6
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.1e-62 Score=505.25 Aligned_cols=426 Identities=28% Similarity=0.571 Sum_probs=335.8
Q ss_pred CC--CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCC--CCcc
Q 010617 1 MS--RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPW--EDRN 76 (506)
Q Consensus 1 m~--~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~ 76 (506)
|. +.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+... ..++++++.+++++++. +...
T Consensus 1 ~~~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~------~~~~i~~~~ipdglp~~~~~~~~ 74 (449)
T PLN02173 1 MEKMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD------PSSPISIATISDGYDQGGFSSAG 74 (449)
T ss_pred CCCCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC------CCCCEEEEEcCCCCCCccccccc
Confidence 55 46999999999999999999999999999999999999876544321 11369999999988763 2233
Q ss_pred CHHHHHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHhhccccccCCC
Q 010617 77 DLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGI 156 (506)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~ 156 (506)
++..++..+.+.+.+.++++++.+.... .+.||||+|.+..|+..+|+++|||.+.|++++++....+++. .+ ..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~-~~-~~~- 150 (449)
T PLN02173 75 SVPEYLQNFKTFGSKTVADIIRKHQSTD-NPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLS-YI-NNG- 150 (449)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHhhccC-CCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhH-Hh-ccC-
Confidence 4566777776678888999998764321 2349999999999999999999999999999888776544321 10 000
Q ss_pred CCCCCCCccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCCCCCcccccccccCCCchhHH
Q 010617 157 IDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKI 236 (506)
Q Consensus 157 ~~~~~~~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 236 (506)
.....+|+++.+..++++ .++........
T Consensus 151 --------------------------------------------------~~~~~~pg~p~l~~~dlp-~~~~~~~~~~~ 179 (449)
T PLN02173 151 --------------------------------------------------SLTLPIKDLPLLELQDLP-TFVTPTGSHLA 179 (449)
T ss_pred --------------------------------------------------CccCCCCCCCCCChhhCC-hhhcCCCCchH
Confidence 000125666666777777 43332222233
Q ss_pred HHHHHHHHHHhhccccEEEEcCcccccccccccC---CceeeecccccCCC----CCCCCC---CCc--cccchhhhhhh
Q 010617 237 FFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF---PELLPIGPLLASNR----LGNTAG---YFW--CEDSNCLKWLD 304 (506)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~---p~v~~VGpl~~~~~----~~~~~~---~~~--~~~~~l~~~l~ 304 (506)
..+.+.+.++...+++.+++||+.+||+...+.. +.++.|||++.... .....+ ..| ..+++|.+||+
T Consensus 180 ~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd 259 (449)
T PLN02173 180 YFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKVCPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLD 259 (449)
T ss_pred HHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhcCCeeEEcccCchhhccccccccccccccccccccchHHHHHHh
Confidence 4454555566778899999999999998866554 46999999974311 000001 112 23456999999
Q ss_pred cCCCCceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhh-cCCeEEEeccchhhhhcC
Q 010617 305 QQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERV-AARGQMISWAPQLRVLNH 383 (506)
Q Consensus 305 ~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~-~~n~~v~~~vpq~~lL~h 383 (506)
.+++++||||||||....+.+++.+++.+| .+.+|+|++... ..+.+|+++.++. ++|+++.+|+||.+||+|
T Consensus 260 ~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~~----~~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H 333 (449)
T PLN02173 260 KRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRAS----EESKLPPGFLETVDKDKSLVLKWSPQLQVLSN 333 (449)
T ss_pred cCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEecc----chhcccchHHHhhcCCceEEeCCCCHHHHhCC
Confidence 999899999999999999999999999999 777899999753 2345889998888 588999999999999999
Q ss_pred CCcceEEeccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCC-CCCcCHHHHHHHHHHHhCCh---H
Q 010617 384 PSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE-GGIITREEIKNKVDQVLGNQ---D 459 (506)
Q Consensus 384 ~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~-~~~~~~~~l~~ai~~vl~d~---~ 459 (506)
++|++|||||||||++||+++|||||++|+++||+.||+++++.||+|+.+..++ +..++.++|.++|+++|.|+ .
T Consensus 334 ~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~ 413 (449)
T PLN02173 334 KAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKE 413 (449)
T ss_pred CccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHH
Confidence 9999999999999999999999999999999999999999997679999987533 23479999999999999764 6
Q ss_pred HHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHH
Q 010617 460 FKARALELKEKAMSSVREGGSSYKTFQNFLQWVK 493 (506)
Q Consensus 460 ~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 493 (506)
+|++|+++++++++|+.+||++.+++++|++++.
T Consensus 414 ~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 414 MKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999885
No 7
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4e-62 Score=510.14 Aligned_cols=441 Identities=24% Similarity=0.445 Sum_probs=329.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCcchhHHH---HhhhcCC-CCCCCeEEEecCCCCCCCCCcc
Q 010617 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHG--FRVTFVNTDYNHKRVV---ESLQGKN-YLGEQIHLVSIPDGMEPWEDRN 76 (506)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~v~---~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~ 76 (506)
|+||+++|+|++||++|++.||+.|+.+| ..|||++++.+...+. ....+.. ...++++++.+|++.++.....
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~ 81 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTEDP 81 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcccch
Confidence 67899999999999999999999999998 8899999987754221 1111100 0123699999987654321111
Q ss_pred CHHHHHHHHHHhCcHHHHHHHHHHhc----CCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHhhccccc
Q 010617 77 DLGKLIEKCLQVMPGKLEELIEEINS----REDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLI 152 (506)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~----~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~ 152 (506)
.+..+ ...+.+.+++.++++.. +...+++|||+|++..|+.++|+++|||++.|+++.++.+....+++.+.
T Consensus 82 ~~~~~----~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~ 157 (481)
T PLN02554 82 TFQSY----IDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLY 157 (481)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhc
Confidence 22222 23344444444444421 11123489999999999999999999999999999999999888865543
Q ss_pred cCCCCCCCCCCccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCC-CCCcccccccccCCC
Q 010617 153 DDGIIDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMP-EMNSRDCFWAHIGDW 231 (506)
Q Consensus 153 ~~~~~~~~~~~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 231 (506)
..+..+. + +.++.... ..+|+++ .+...+++ .....
T Consensus 158 ~~~~~~~------------~----------------------------~~~~~~~~-v~iPgl~~pl~~~dlp-~~~~~- 194 (481)
T PLN02554 158 DEKKYDV------------S----------------------------ELEDSEVE-LDVPSLTRPYPVKCLP-SVLLS- 194 (481)
T ss_pred cccccCc------------c----------------------------ccCCCCce-eECCCCCCCCCHHHCC-CcccC-
Confidence 2210000 0 01111111 2477763 56667776 22221
Q ss_pred chhHHHHHHHHHHHHhhccccEEEEcCcccccccccc-------cCCceeeecccccCCCCCCCCCCCccccchhhhhhh
Q 010617 232 TSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFT-------TFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLD 304 (506)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~-------~~p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~l~ 304 (506)
+.....+.+..+.+.+++.+++||+.+||..... ..|+++.|||+........ ......+.+|.+|++
T Consensus 195 ---~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~~~~~~~~v~~vGpl~~~~~~~~--~~~~~~~~~~~~wLd 269 (481)
T PLN02554 195 ---KEWLPLFLAQARRFREMKGILVNTVAELEPQALKFFSGSSGDLPPVYPVGPVLHLENSGD--DSKDEKQSEILRWLD 269 (481)
T ss_pred ---HHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhcccCCCCEEEeCCCcccccccc--ccccccchHHHHHHh
Confidence 1223444455566788999999999999986443 2368999999943221110 001134568999999
Q ss_pred cCCCCceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCC-------C---CCCCCCChhhHHhhcCCeEEEec
Q 010617 305 QQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDIT-------T---DANDRYPEGFQERVAARGQMISW 374 (506)
Q Consensus 305 ~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~-------~---~~~~~lp~~~~~~~~~n~~v~~~ 374 (506)
.+++++||||||||...++.+++++++.+|+.++++|||+++.... + ...+.+|++|.++.++|+++.+|
T Consensus 270 ~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W 349 (481)
T PLN02554 270 EQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGW 349 (481)
T ss_pred cCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHhccCceEEee
Confidence 9988899999999998899999999999999999999999975311 0 01123699999999999999999
Q ss_pred cchhhhhcCCCcceEEeccCchhHHHHHHcCCcEEeccCcccchhhHHh-hhccceeeeEeecC--------CCCCcCHH
Q 010617 375 APQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERY-ICDFWKVGLKFDRD--------EGGIITRE 445 (506)
Q Consensus 375 vpq~~lL~h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~r-v~~~lG~G~~l~~~--------~~~~~~~~ 445 (506)
+||.+||+|++|++|||||||||++||+++|||||++|+++||+.||++ +++ +|+|+.++.+ +++.++++
T Consensus 350 ~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~-~g~Gv~l~~~~~~~~~~~~~~~~~~e 428 (481)
T PLN02554 350 APQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEE-LGLAVEIRKYWRGDLLAGEMETVTAE 428 (481)
T ss_pred CCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCccccchhhHHHHHHH-hCceEEeeccccccccccccCeEcHH
Confidence 9999999999999999999999999999999999999999999999955 666 7999999641 12468999
Q ss_pred HHHHHHHHHhC-ChHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHhcc
Q 010617 446 EIKNKVDQVLG-NQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTNA 496 (506)
Q Consensus 446 ~l~~ai~~vl~-d~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~ 496 (506)
+|.++|+++|. |++||+||+++++++++++.+||++..++++||++++++.
T Consensus 429 ~l~~av~~vm~~~~~~r~~a~~l~~~~~~av~~gGss~~~l~~lv~~~~~~~ 480 (481)
T PLN02554 429 EIERGIRCLMEQDSDVRKRVKEMSEKCHVALMDGGSSHTALKKFIQDVTKNI 480 (481)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhC
Confidence 99999999996 7899999999999999999999999999999999999874
No 8
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=6.7e-62 Score=503.56 Aligned_cols=429 Identities=28% Similarity=0.499 Sum_probs=331.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHH--HHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHH
Q 010617 3 RPRVLVMPAPAQGHVIPLLEFSQC--LAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGK 80 (506)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~La~~--L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 80 (506)
+.||+++|+|++||++|++.||+. |++||++|||++++.+++.++... .....+++..++++++++.. .+...
T Consensus 8 ~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~----~~~~~~~~~~~~~glp~~~~-~~~~~ 82 (456)
T PLN02210 8 ETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVE----KPRRPVDLVFFSDGLPKDDP-RAPET 82 (456)
T ss_pred CCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhcccc----CCCCceEEEECCCCCCCCcc-cCHHH
Confidence 579999999999999999999999 559999999999998876653321 11245788878877765532 34445
Q ss_pred HHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHhhccccccCCCCCCC
Q 010617 81 LIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSH 160 (506)
Q Consensus 81 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (506)
++..+.+.+.+.++++++. .+|||||+|.+..|+..+|+++|||.+.|++..+..+....+.+... +..+
T Consensus 83 ~~~~~~~~~~~~l~~~l~~------~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~--~~~~-- 152 (456)
T PLN02210 83 LLKSLNKVGAKNLSKIIEE------KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKT--NSFP-- 152 (456)
T ss_pred HHHHHHHhhhHHHHHHHhc------CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhcc--CCCC--
Confidence 6666666666667777765 67999999999999999999999999999999998888666532110 0000
Q ss_pred CCCccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCCCCCcccccccccCCCchhHHHHHH
Q 010617 161 GMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDL 240 (506)
Q Consensus 161 ~~~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 240 (506)
. ..+... ...+|+++.+...+++ .+...... ..+...
T Consensus 153 ------------~----------------------------~~~~~~-~~~~Pgl~~~~~~dl~-~~~~~~~~-~~~~~~ 189 (456)
T PLN02210 153 ------------D----------------------------LEDLNQ-TVELPALPLLEVRDLP-SFMLPSGG-AHFNNL 189 (456)
T ss_pred ------------c----------------------------ccccCC-eeeCCCCCCCChhhCC-hhhhcCCc-hHHHHH
Confidence 0 000001 1246777767777777 32222211 222223
Q ss_pred HHHHHHhhccccEEEEcCcccccccccccC---CceeeecccccCC---CCCCC--CC---CCccccchhhhhhhcCCCC
Q 010617 241 LERNTRAMIAVNFHFCNSTYELESEAFTTF---PELLPIGPLLASN---RLGNT--AG---YFWCEDSNCLKWLDQQQPS 309 (506)
Q Consensus 241 ~~~~~~~~~~~~~~l~ns~~~le~~~~~~~---p~v~~VGpl~~~~---~~~~~--~~---~~~~~~~~l~~~l~~~~~~ 309 (506)
+.+..+....++.+++||+.+||....+.. +++++|||++... ..... .+ .-|..+.+|.+|++.++++
T Consensus 190 ~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~ 269 (456)
T PLN02210 190 MAEFADCLRYVKWVLVNSFYELESEIIESMADLKPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARS 269 (456)
T ss_pred HHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhcCCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCC
Confidence 334434556789999999999999877663 5799999997421 10000 01 1134567899999999889
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhh-cCCeEEEeccchhhhhcCCCcce
Q 010617 310 SVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERV-AARGQMISWAPQLRVLNHPSIAC 388 (506)
Q Consensus 310 ~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~-~~n~~v~~~vpq~~lL~h~~v~~ 388 (506)
+||||||||......+++++++.+|+..+++|||+++... ....+..+.++. ++|+++.+|+||.+||+|+++++
T Consensus 270 svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~----~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~ 345 (456)
T PLN02210 270 SVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKE----KAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISC 345 (456)
T ss_pred ceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCc----cccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCe
Confidence 9999999999888999999999999999999999997531 122345566666 48888899999999999999999
Q ss_pred EEeccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCC-CCCcCHHHHHHHHHHHhCCh---HHHHHH
Q 010617 389 FLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE-GGIITREEIKNKVDQVLGNQ---DFKARA 464 (506)
Q Consensus 389 ~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~-~~~~~~~~l~~ai~~vl~d~---~~r~~a 464 (506)
|||||||||++||+++|||||++|+++||+.||+++++.+|+|+.+..++ ++.++.++|+++|+++|.|+ ++|+||
T Consensus 346 FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a 425 (456)
T PLN02210 346 FVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRA 425 (456)
T ss_pred EEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHH
Confidence 99999999999999999999999999999999999987469999997532 24689999999999999876 499999
Q ss_pred HHHHHHHHhhhhcCCChHHHHHHHHHHHH
Q 010617 465 LELKEKAMSSVREGGSSYKTFQNFLQWVK 493 (506)
Q Consensus 465 ~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 493 (506)
+++++++++|+++||||..++++|++++.
T Consensus 426 ~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 426 AELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 99999999999999999999999999886
No 9
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=9.9e-62 Score=505.39 Aligned_cols=440 Identities=26% Similarity=0.481 Sum_probs=340.4
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCC----CeEEEEeCCcch----hHHHHhhhcCCCCCCCeEEEecCCCCCCC
Q 010617 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHG----FRVTFVNTDYNH----KRVVESLQGKNYLGEQIHLVSIPDGMEPW 72 (506)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~La~~L~~rG----h~Vt~~~~~~~~----~~v~~~~~~~~~~~~~i~~~~~~~~~~~~ 72 (506)
|.|.||+++|+|++||++|++.||+.|+.|| +.|||++++.+. ..+.....+......+++++.+|++..+.
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~ 80 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPT 80 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCC
Confidence 8899999999999999999999999999997 799999987642 23444322111112269999999764332
Q ss_pred CCccCHHHHHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHhhccccc
Q 010617 73 EDRNDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLI 152 (506)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~ 152 (506)
. ..+...++..+.+.+.+.++++++.+. .+++|||+|.+..|+..+|+++|||++.|+++.+..+....+++...
T Consensus 81 ~-~e~~~~~~~~~~~~~~~~l~~~L~~l~----~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~ 155 (480)
T PLN00164 81 D-AAGVEEFISRYIQLHAPHVRAAIAGLS----CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALD 155 (480)
T ss_pred c-cccHHHHHHHHHHhhhHHHHHHHHhcC----CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhc
Confidence 1 123345555566677888888887651 35799999999999999999999999999999999988877755432
Q ss_pred cCCCCCCCCCCccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCCCCCcccccccccCCCc
Q 010617 153 DDGIIDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWT 232 (506)
Q Consensus 153 ~~~~~~~~~~~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 232 (506)
.....+ .......+ .+|+++.+...+++ .+.....
T Consensus 156 ~~~~~~-------------------------------------------~~~~~~~~-~iPGlp~l~~~dlp-~~~~~~~ 190 (480)
T PLN00164 156 EEVAVE-------------------------------------------FEEMEGAV-DVPGLPPVPASSLP-APVMDKK 190 (480)
T ss_pred ccccCc-------------------------------------------ccccCcce-ecCCCCCCChHHCC-chhcCCC
Confidence 111000 01100111 47888888888888 3332221
Q ss_pred hhHHHHHHHHHHHHhhccccEEEEcCcccccccccccC-----------CceeeecccccCCCCCCCCCCCccccchhhh
Q 010617 233 SQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF-----------PELLPIGPLLASNRLGNTAGYFWCEDSNCLK 301 (506)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~-----------p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~ 301 (506)
....+.+....+.+.+++.+++||+.+||+...... ++++.|||++...... .....+++|.+
T Consensus 191 --~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~~~v~~vGPl~~~~~~~----~~~~~~~~~~~ 264 (480)
T PLN00164 191 --SPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRCTPGRPAPTVYPIGPVISLAFTP----PAEQPPHECVR 264 (480)
T ss_pred --cHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhccccccCCCCceEEeCCCccccccC----CCccchHHHHH
Confidence 112233334445667899999999999998655443 5799999998532111 11245678999
Q ss_pred hhhcCCCCceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCC--------CCCCCCChhhHHhhcCCeEEE-
Q 010617 302 WLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITT--------DANDRYPEGFQERVAARGQMI- 372 (506)
Q Consensus 302 ~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~--------~~~~~lp~~~~~~~~~n~~v~- 372 (506)
|||.+++++||||||||...++.+++++++.+|+..+++|||++...... ...+.+|+++.++..+++.++
T Consensus 265 wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~ 344 (480)
T PLN00164 265 WLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWP 344 (480)
T ss_pred HHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEe
Confidence 99999889999999999988999999999999999999999999854210 012248899999998888776
Q ss_pred eccchhhhhcCCCcceEEeccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCC--CCCcCHHHHHHH
Q 010617 373 SWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE--GGIITREEIKNK 450 (506)
Q Consensus 373 ~~vpq~~lL~h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~--~~~~~~~~l~~a 450 (506)
+|+||.+||+|++|++|||||||||++||+++|||||++|+++||+.||+++++.+|+|+.+..++ ++.++.++|.++
T Consensus 345 ~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~a 424 (480)
T PLN00164 345 TWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERA 424 (480)
T ss_pred ecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998865479999996532 235799999999
Q ss_pred HHHHhCCh-----HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHhcc
Q 010617 451 VDQVLGNQ-----DFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTNA 496 (506)
Q Consensus 451 i~~vl~d~-----~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~ 496 (506)
|+++|.|+ .+|++|+++++++++++.+||++.+++++|++++.+..
T Consensus 425 v~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~v~~~~~~~ 475 (480)
T PLN00164 425 VRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQRLAREIRHGA 475 (480)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhcc
Confidence 99999753 48999999999999999999999999999999998663
No 10
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.6e-61 Score=502.31 Aligned_cols=444 Identities=29% Similarity=0.477 Sum_probs=331.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCC----CCCCC-CCccC
Q 010617 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPD----GMEPW-EDRND 77 (506)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~----~~~~~-~~~~~ 77 (506)
+.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+.+... ..+++++..++. +++++ +...+
T Consensus 9 ~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~----~~~~i~~~~lp~P~~~~lPdG~~~~~~ 84 (477)
T PLN02863 9 GTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS----KHPSIETLVLPFPSHPSIPSGVENVKD 84 (477)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc----cCCCeeEEeCCCCCcCCCCCCCcChhh
Confidence 6899999999999999999999999999999999999998877765421 113577776542 33333 11112
Q ss_pred H----HHHHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHhhcccccc
Q 010617 78 L----GKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLID 153 (506)
Q Consensus 78 ~----~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~ 153 (506)
+ ...+......+.+.+.+++.++ . .+++|||+|.+.+|+..+|+++|||++.|++++++.+..+.++.....
T Consensus 85 ~~~~~~~~~~~a~~~~~~~~~~~l~~~---~-~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~ 160 (477)
T PLN02863 85 LPPSGFPLMIHALGELYAPLLSWFRSH---P-SPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMP 160 (477)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHhC---C-CCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhccc
Confidence 1 1122222234445555555542 1 467999999999999999999999999999999999998777532110
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCCCCCcccccccccCCCch
Q 010617 154 DGIIDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTS 233 (506)
Q Consensus 154 ~~~~~~~~~~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 233 (506)
....+ . +..... ....+|+++.+..++++ .++.....
T Consensus 161 ~~~~~-~----------------------------------------~~~~~~-~~~~iPg~~~~~~~dlp-~~~~~~~~ 197 (477)
T PLN02863 161 TKINP-D----------------------------------------DQNEIL-SFSKIPNCPKYPWWQIS-SLYRSYVE 197 (477)
T ss_pred ccccc-c----------------------------------------cccccc-ccCCCCCCCCcChHhCc-hhhhccCc
Confidence 00000 0 000000 01246777777778877 33321111
Q ss_pred hHHHHHHHHHHHHhhccccEEEEcCcccccccccccC------CceeeecccccCCCCCC---CCC-CCccccchhhhhh
Q 010617 234 QKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF------PELLPIGPLLASNRLGN---TAG-YFWCEDSNCLKWL 303 (506)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~------p~v~~VGpl~~~~~~~~---~~~-~~~~~~~~l~~~l 303 (506)
...+.+.+.+.......++.+++||+.+||....+.. ++++.|||+........ ..+ .....+++|.+||
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WL 277 (477)
T PLN02863 198 GDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWL 277 (477)
T ss_pred cchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhhcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHH
Confidence 2223444445445556788999999999998866553 57999999975432100 001 1111356799999
Q ss_pred hcCCCCceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCC-CCCCCCChhhHHhhcCCeE-EEeccchhhhh
Q 010617 304 DQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITT-DANDRYPEGFQERVAARGQ-MISWAPQLRVL 381 (506)
Q Consensus 304 ~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~-~~~~~lp~~~~~~~~~n~~-v~~~vpq~~lL 381 (506)
+.+++++||||||||....+.+++++++.+|+..+++|||+++..... .....+|++|.++..+... +.+|+||.+||
T Consensus 278 d~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL 357 (477)
T PLN02863 278 DTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAIL 357 (477)
T ss_pred hcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHh
Confidence 999889999999999988999999999999999999999999753211 1224689999888765554 55999999999
Q ss_pred cCCCcceEEeccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHh-CChHH
Q 010617 382 NHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVL-GNQDF 460 (506)
Q Consensus 382 ~h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl-~d~~~ 460 (506)
+|++|++|||||||||++|||++|||||++|+++||+.||+++++.||+|+++..++....+.+++.++|.+++ .++.|
T Consensus 358 ~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~~~~ 437 (477)
T PLN02863 358 SHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSENQVE 437 (477)
T ss_pred cCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhccHHH
Confidence 99999999999999999999999999999999999999999987557999999643224568999999999998 67899
Q ss_pred HHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHhccc
Q 010617 461 KARALELKEKAMSSVREGGSSYKTFQNFLQWVKTNAL 497 (506)
Q Consensus 461 r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~ 497 (506)
|+||+++++++++|+.+||++.+++++|+++++....
T Consensus 438 r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~~~ 474 (477)
T PLN02863 438 RERAKELRRAALDAIKERGSSVKDLDGFVKHVVELGL 474 (477)
T ss_pred HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999987653
No 11
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1.5e-61 Score=499.55 Aligned_cols=429 Identities=26% Similarity=0.454 Sum_probs=332.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCC----CCCCCCCccC
Q 010617 3 RPRVLVMPAPAQGHVIPLLEFSQCLA-KHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPD----GMEPWEDRND 77 (506)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~ 77 (506)
|+||+++|+|++||++|++.||+.|+ ++|++|||++++.+...+.+.... ..++++..+|. ++++.. .+
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~----~~~i~~~~lp~p~~~glp~~~--~~ 78 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLN----STGVDIVGLPSPDISGLVDPS--AH 78 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhcccc----CCCceEEECCCccccCCCCCC--cc
Confidence 78999999999999999999999998 789999999999887655333211 13688888884 332111 12
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHhhccccccCCCC
Q 010617 78 LGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGII 157 (506)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (506)
....+......+.+.+++++.++. .+|+|||+|++..|+..+|+++|||++.|+++.+..++...+.+.+......
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~----~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~ 154 (481)
T PLN02992 79 VVTKIGVIMREAVPTLRSKIAEMH----QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKE 154 (481)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcC----CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcccccc
Confidence 222333334456677777777642 4689999999999999999999999999999999888766664432111000
Q ss_pred CCCCCCccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCCCCCcccccccccCCCchhHHH
Q 010617 158 DSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIF 237 (506)
Q Consensus 158 ~~~~~~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 237 (506)
+ ....... ..+|+++.+...+++ .....+. ...
T Consensus 155 ~-------------------------------------------~~~~~~~-~~iPg~~~l~~~dlp-~~~~~~~--~~~ 187 (481)
T PLN02992 155 E-------------------------------------------HTVQRKP-LAMPGCEPVRFEDTL-DAYLVPD--EPV 187 (481)
T ss_pred c-------------------------------------------cccCCCC-cccCCCCccCHHHhh-HhhcCCC--cHH
Confidence 0 0000011 257887777777777 3222221 123
Q ss_pred HHHHHHHHHhhccccEEEEcCcccccccccccC-----------CceeeecccccCCCCCCCCCCCccccchhhhhhhcC
Q 010617 238 FDLLERNTRAMIAVNFHFCNSTYELESEAFTTF-----------PELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQ 306 (506)
Q Consensus 238 ~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~-----------p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~ 306 (506)
...+.+..+.+.+++.+++||+.+||....+.. +.++.|||+...... -..+.+|.+|||.+
T Consensus 188 ~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~v~~VGPl~~~~~~-------~~~~~~c~~wLd~~ 260 (481)
T PLN02992 188 YRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARVPVYPIGPLCRPIQS-------SKTDHPVLDWLNKQ 260 (481)
T ss_pred HHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCCceEEecCccCCcCC-------CcchHHHHHHHHcC
Confidence 444555556678899999999999999877642 469999999754221 12456799999999
Q ss_pred CCCceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCC---------------C-CCCCCChhhHHhhcCCeE
Q 010617 307 QPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITT---------------D-ANDRYPEGFQERVAARGQ 370 (506)
Q Consensus 307 ~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~---------------~-~~~~lp~~~~~~~~~n~~ 370 (506)
++++||||||||...++.+++++++.+|+.++++|||++.....+ . ..+.+|++|.+|+.++..
T Consensus 261 ~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~ 340 (481)
T PLN02992 261 PNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGF 340 (481)
T ss_pred CCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCE
Confidence 889999999999999999999999999999999999999642110 0 123589999999987776
Q ss_pred EE-eccchhhhhcCCCcceEEeccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHH
Q 010617 371 MI-SWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKN 449 (506)
Q Consensus 371 v~-~~vpq~~lL~h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ 449 (506)
++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+|+|+.++.. ++.++.++|++
T Consensus 341 vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~-~~~~~~~~l~~ 419 (481)
T PLN02992 341 VVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDP-KEVISRSKIEA 419 (481)
T ss_pred EEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCC-CCcccHHHHHH
Confidence 55 99999999999999999999999999999999999999999999999999996337999999752 14689999999
Q ss_pred HHHHHhCCh---HHHHHHHHHHHHHHhhhh--cCCChHHHHHHHHHHHHhcc
Q 010617 450 KVDQVLGNQ---DFKARALELKEKAMSSVR--EGGSSYKTFQNFLQWVKTNA 496 (506)
Q Consensus 450 ai~~vl~d~---~~r~~a~~l~~~~~~~~~--~gg~~~~~~~~~~~~~~~~~ 496 (506)
+|+++|.|+ .+|++|+++++++++|+. +||+|.+++++|++++++-+
T Consensus 420 av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~v~~~~~~~ 471 (481)
T PLN02992 420 LVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRVTKECQRFL 471 (481)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHH
Confidence 999999763 899999999999999994 69999999999999998755
No 12
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=6.8e-61 Score=492.35 Aligned_cols=431 Identities=25% Similarity=0.454 Sum_probs=324.7
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEE--EeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCC-C-C
Q 010617 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHG--FRVTF--VNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPW-E-D 74 (506)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~--~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~-~-~ 74 (506)
|.+-||+++|+|++||++|++.||+.|+.+| +.||+ ++++.+...+.....+.....++++|+.+|++.+.. . .
T Consensus 1 ~~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~ 80 (451)
T PLN03004 1 MGEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSST 80 (451)
T ss_pred CCCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCccc
Confidence 7889999999999999999999999999998 55555 455443333222111111112369999999765422 1 1
Q ss_pred c-cCHHHHHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHhhcccccc
Q 010617 75 R-NDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLID 153 (506)
Q Consensus 75 ~-~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~ 153 (506)
. .+....+......+.+.++++++++.. . .+++|||+|++..|+..+|+++|||++.|++++++.+..+.+++....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~-~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~ 158 (451)
T PLN03004 81 SRHHHESLLLEILCFSNPSVHRTLFSLSR-N-FNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDE 158 (451)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHhcCC-C-CCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccc
Confidence 1 123333434445677778888887632 1 346999999999999999999999999999999999988877543211
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCCCCCcccccccccCCCch
Q 010617 154 DGIIDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTS 233 (506)
Q Consensus 154 ~~~~~~~~~~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 233 (506)
..... ...+ .....+|+++.+...+++ .+...+.
T Consensus 159 ~~~~~------------------------------------------~~~~--~~~v~iPg~p~l~~~dlp-~~~~~~~- 192 (451)
T PLN03004 159 TTPGK------------------------------------------NLKD--IPTVHIPGVPPMKGSDMP-KAVLERD- 192 (451)
T ss_pred ccccc------------------------------------------cccc--CCeecCCCCCCCChHHCc-hhhcCCc-
Confidence 10000 0000 011257888877788888 3332221
Q ss_pred hHHHHHHHHHHHHhhccccEEEEcCcccccccccccC------CceeeecccccCCCCCCCCCCCccccchhhhhhhcCC
Q 010617 234 QKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF------PELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQ 307 (506)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~------p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 307 (506)
....+.+.+..+.+.+++.+++||+.+||....+.. ++++.|||+........ .. ...+.+|.+|||.++
T Consensus 193 -~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~~~~v~~vGPl~~~~~~~~--~~-~~~~~~c~~wLd~~~ 268 (451)
T PLN03004 193 -DEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEELCFRNIYPIGPLIVNGRIED--RN-DNKAVSCLNWLDSQP 268 (451)
T ss_pred -hHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcCCCCCEEEEeeeccCccccc--cc-cchhhHHHHHHHhCC
Confidence 223445555556677899999999999998755433 47999999985322110 11 123457999999998
Q ss_pred CCceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCC----CCC-CCChhhHHhhcCCe-EEEeccchhhhh
Q 010617 308 PSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTD----AND-RYPEGFQERVAARG-QMISWAPQLRVL 381 (506)
Q Consensus 308 ~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~----~~~-~lp~~~~~~~~~n~-~v~~~vpq~~lL 381 (506)
+++||||||||...++.+++++++.+|+.++++|||++....... ... .+|++|.+|..++. ++.+|+||.+||
T Consensus 269 ~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL 348 (451)
T PLN03004 269 EKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVL 348 (451)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHh
Confidence 899999999999999999999999999999999999998531100 112 38999999987655 556999999999
Q ss_pred cCCCcceEEeccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCChHHH
Q 010617 382 NHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFK 461 (506)
Q Consensus 382 ~h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~~~r 461 (506)
+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+|+|+.++.++.+.++.++|+++|+++|.|++||
T Consensus 349 ~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~~~r 428 (451)
T PLN03004 349 NHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGECPVR 428 (451)
T ss_pred CCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999999999999999999999999999997547999999763223679999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCChHH
Q 010617 462 ARALELKEKAMSSVREGGSSYK 483 (506)
Q Consensus 462 ~~a~~l~~~~~~~~~~gg~~~~ 483 (506)
++|++++++.++|+.+||||.+
T Consensus 429 ~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 429 ERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred HHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999999999999999853
No 13
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=1.9e-60 Score=488.70 Aligned_cols=434 Identities=26% Similarity=0.444 Sum_probs=333.2
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCcchhHHH--HhhhcCCCCCCCeEEEecCCCCCCC--CCc
Q 010617 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKH-GFRVTFVNTDYNHKRVV--ESLQGKNYLGEQIHLVSIPDGMEPW--EDR 75 (506)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~v~--~~~~~~~~~~~~i~~~~~~~~~~~~--~~~ 75 (506)
|.++||+++|+|++||++|++.||+.|+.+ |..|||++++.+...+. ....+.. ...++++..+|....++ ...
T Consensus 1 ~~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~-~~~~i~~~~lp~~~~~~l~~~~ 79 (470)
T PLN03015 1 MDQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAA-ARTTCQITEIPSVDVDNLVEPD 79 (470)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhcccccccccc-CCCceEEEECCCCccccCCCCC
Confidence 788999999999999999999999999987 99999998887664431 1111111 11259999998543221 111
Q ss_pred cCHHHHHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCc-eEEEccchHHHHHHHhhccccccC
Q 010617 76 NDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVR-GAVFWPSSAASVALVFRIPKLIDD 154 (506)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP-~v~~~~~~~~~~~~~~~~~~~~~~ 154 (506)
.+....+....+.+.+.++++++++. .+++|||+|.+..|+.++|+++||| .+.++++.++....+.+++....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~l~----~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~- 154 (470)
T PLN03015 80 ATIFTKMVVKMRAMKPAVRDAVKSMK----RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDT- 154 (470)
T ss_pred ccHHHHHHHHHHhchHHHHHHHHhcC----CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhc-
Confidence 13333344445577888999988753 3679999999999999999999999 58888888888777776554321
Q ss_pred CCCCCCCCCccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCCCCCcccccccccCCCchh
Q 010617 155 GIIDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQ 234 (506)
Q Consensus 155 ~~~~~~~~~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 234 (506)
..... ....... ..+|+++.+...+++. ....+..
T Consensus 155 -~~~~~-----------------------------------------~~~~~~~-~~vPg~p~l~~~dlp~-~~~~~~~- 189 (470)
T PLN03015 155 -VVEGE-----------------------------------------YVDIKEP-LKIPGCKPVGPKELME-TMLDRSD- 189 (470)
T ss_pred -ccccc-----------------------------------------cCCCCCe-eeCCCCCCCChHHCCH-hhcCCCc-
Confidence 10000 0000111 2478888888888883 3322221
Q ss_pred HHHHHHHHHHHHhhccccEEEEcCcccccccccccC-----------CceeeecccccCCCCCCCCCCCccccchhhhhh
Q 010617 235 KIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF-----------PELLPIGPLLASNRLGNTAGYFWCEDSNCLKWL 303 (506)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~-----------p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~l 303 (506)
..+ ..+.+..+.+.+++.+++||+.+||+...+.. +.++.|||+...... ...+.+|.+||
T Consensus 190 ~~~-~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~~~v~~VGPl~~~~~~-------~~~~~~~~~WL 261 (470)
T PLN03015 190 QQY-KECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRVMKVPVYPIGPIVRTNVH-------VEKRNSIFEWL 261 (470)
T ss_pred HHH-HHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccccccCCceEEecCCCCCccc-------ccchHHHHHHH
Confidence 122 33334555678899999999999998766443 469999999843211 12345799999
Q ss_pred hcCCCCceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCC--------C-CCCCCCChhhHHhhcCCeEEE-e
Q 010617 304 DQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDIT--------T-DANDRYPEGFQERVAARGQMI-S 373 (506)
Q Consensus 304 ~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~--------~-~~~~~lp~~~~~~~~~n~~v~-~ 373 (506)
|.+++++||||||||...++.+++++++.+|+.++++|||++..... . ...+.+|++|.+|+.++++++ +
T Consensus 262 d~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~ 341 (470)
T PLN03015 262 DKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQ 341 (470)
T ss_pred HhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccccccccccccchhhcCChHHHHhhccCceEEEe
Confidence 99988999999999999999999999999999999999999964211 0 012358999999999888765 9
Q ss_pred ccchhhhhcCCCcceEEeccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeec-CCCCCcCHHHHHHHHH
Q 010617 374 WAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDR-DEGGIITREEIKNKVD 452 (506)
Q Consensus 374 ~vpq~~lL~h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~-~~~~~~~~~~l~~ai~ 452 (506)
|+||.+||+|++|++|||||||||++||+++|||||++|+++||+.||+++++.||+|+.+.. ++++.++.++|+++|+
T Consensus 342 W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~ 421 (470)
T PLN03015 342 WAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVR 421 (470)
T ss_pred cCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999655899999952 1224689999999999
Q ss_pred HHhC---C--hHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHH
Q 010617 453 QVLG---N--QDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVK 493 (506)
Q Consensus 453 ~vl~---d--~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 493 (506)
++|. + +.+|+||+++++++++|+.+||||++++++|+++++
T Consensus 422 ~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~~~~ 467 (470)
T PLN03015 422 KIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAKRCY 467 (470)
T ss_pred HHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhcc
Confidence 9994 2 389999999999999999999999999999998863
No 14
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.5e-60 Score=497.45 Aligned_cols=446 Identities=24% Similarity=0.414 Sum_probs=329.8
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCC---eEEEEeCCcchh-HHHHhhhcCCCCCCCeEEEecCCCCCCC-CC-
Q 010617 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGF---RVTFVNTDYNHK-RVVESLQGKNYLGEQIHLVSIPDGMEPW-ED- 74 (506)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh---~Vt~~~~~~~~~-~v~~~~~~~~~~~~~i~~~~~~~~~~~~-~~- 74 (506)
|++.||+|+|+|++||++|++.||+.|+.+|. .||++++..+.. .......+.....++|+|+.+|++..+. ..
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~ 80 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMEL 80 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCccccc
Confidence 78899999999999999999999999999983 567776543321 1111111111122369999999654221 11
Q ss_pred -ccCHHHHHHHHHHhCcHHHHHHHHHHhcC----CCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHhhcc
Q 010617 75 -RNDLGKLIEKCLQVMPGKLEELIEEINSR----EDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIP 149 (506)
Q Consensus 75 -~~~~~~~~~~~~~~~~~~~~~ll~~l~~~----~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~ 149 (506)
.......+..+...+.+.++++++++... +..+++|||+|.+..|+..+|+++|||.+.|+++++..+..+.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~ 160 (475)
T PLN02167 81 FVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLP 160 (475)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHH
Confidence 11222233344455666677777665321 1124699999999999999999999999999999998888777654
Q ss_pred ccccCCCCCCCCCCccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCC-CCCCccccccccc
Q 010617 150 KLIDDGIIDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKM-PEMNSRDCFWAHI 228 (506)
Q Consensus 150 ~~~~~~~~~~~~~~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 228 (506)
...... +.. .+ ....... ..+|++ +.+...+++ .+.
T Consensus 161 ~~~~~~--~~~----------~~-----------------------------~~~~~~~-~~iPgl~~~l~~~dlp-~~~ 197 (475)
T PLN02167 161 ERHRKT--ASE----------FD-----------------------------LSSGEEE-LPIPGFVNSVPTKVLP-PGL 197 (475)
T ss_pred Hhcccc--ccc----------cc-----------------------------cCCCCCe-eECCCCCCCCChhhCc-hhh
Confidence 422110 000 00 0000111 246777 356666776 322
Q ss_pred CCCchhHHHHHHHHHHHHhhccccEEEEcCccccccccccc-------CCceeeecccccCCCCCCCCCCCccccchhhh
Q 010617 229 GDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTT-------FPELLPIGPLLASNRLGNTAGYFWCEDSNCLK 301 (506)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~-------~p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~ 301 (506)
.... ..+.+.+..+...+++.+++||+.+||+...+. .|+++.|||++....... .......+.+|.+
T Consensus 198 ~~~~----~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~~~p~v~~vGpl~~~~~~~~-~~~~~~~~~~~~~ 272 (475)
T PLN02167 198 FMKE----SYEAWVEIAERFPEAKGILVNSFTELEPNAFDYFSRLPENYPPVYPVGPILSLKDRTS-PNLDSSDRDRIMR 272 (475)
T ss_pred hCcc----hHHHHHHHHHhhcccCEeeeccHHHHHHHHHHHHHhhcccCCeeEEeccccccccccC-CCCCcchhHHHHH
Confidence 2211 123344555567789999999999999876654 268999999986432110 0000123367999
Q ss_pred hhhcCCCCceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCC--CCCCCCChhhHHhhcCCeEEEeccchhh
Q 010617 302 WLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITT--DANDRYPEGFQERVAARGQMISWAPQLR 379 (506)
Q Consensus 302 ~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~--~~~~~lp~~~~~~~~~n~~v~~~vpq~~ 379 (506)
||+.+++++||||||||...++.+++++++.+|+.++++|||+++..... .....+|++|.+++.+++++++|+||.+
T Consensus 273 wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~ 352 (475)
T PLN02167 273 WLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVE 352 (475)
T ss_pred HHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHH
Confidence 99999889999999999988899999999999999999999999753211 1123589999999999999999999999
Q ss_pred hhcCCCcceEEeccCchhHHHHHHcCCcEEeccCcccchhhHHh-hhccceeeeEeecC---C-CCCcCHHHHHHHHHHH
Q 010617 380 VLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERY-ICDFWKVGLKFDRD---E-GGIITREEIKNKVDQV 454 (506)
Q Consensus 380 lL~h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~r-v~~~lG~G~~l~~~---~-~~~~~~~~l~~ai~~v 454 (506)
||+|++|++|||||||||++|||++|||||++|+++||+.||++ +++ +|+|+.+..+ + +..+++++|+++|+++
T Consensus 353 iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~-~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~ 431 (475)
T PLN02167 353 ILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKE-LGLAVELRLDYVSAYGEIVKADEIAGAVRSL 431 (475)
T ss_pred HhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchhhHHHHHHH-hCeeEEeecccccccCCcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987 555 7999998652 1 1357999999999999
Q ss_pred hCCh-HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHhc
Q 010617 455 LGNQ-DFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTN 495 (506)
Q Consensus 455 l~d~-~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~ 495 (506)
|.++ .||++|+++++++++++.+||++.+++++||+++++.
T Consensus 432 m~~~~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~~i~~~ 473 (475)
T PLN02167 432 MDGEDVPRKKVKEIAEAARKAVMDGGSSFVAVKRFIDDLLGD 473 (475)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence 9755 8999999999999999999999999999999999875
No 15
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.2e-60 Score=495.16 Aligned_cols=430 Identities=27% Similarity=0.491 Sum_probs=333.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCC-CCccCHH
Q 010617 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPW-EDRNDLG 79 (506)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~ 79 (506)
+.||+++|+|++||++|++.||++|++| ||+|||++++.+...+++... ..+++|+.+|++.+.. +...+..
T Consensus 10 ~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~-----~~gi~fv~lp~~~p~~~~~~~~~~ 84 (459)
T PLN02448 10 SCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK-----PDNIRFATIPNVIPSELVRAADFP 84 (459)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC-----CCCEEEEECCCCCCCccccccCHH
Confidence 6799999999999999999999999999 999999999998887766421 2479999999765544 2233455
Q ss_pred HHHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHhhccccccCCCCCC
Q 010617 80 KLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDS 159 (506)
Q Consensus 80 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (506)
.++..+.+.+.+.++++++++. .++||||+|.+..|+..+|+++|||++.++++++..+....+++.+...+..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~----~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (459)
T PLN02448 85 GFLEAVMTKMEAPFEQLLDRLE----PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPV 160 (459)
T ss_pred HHHHHHHHHhHHHHHHHHHhcC----CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCC
Confidence 5566555567777888887753 368999999999999999999999999999999988877766543322111000
Q ss_pred CCCCccccCCCCCCCCCCcccccccccchhheeehhccccCCCCC-cccceeecCCCCCCCcccccccccCCCchhHHHH
Q 010617 160 HGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPM-SMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFF 238 (506)
Q Consensus 160 ~~~~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 238 (506)
. ... .......+|+++.+...+++ .+... ......
T Consensus 161 ~-----------------------------------------~~~~~~~~~~~iPg~~~l~~~dlp-~~~~~--~~~~~~ 196 (459)
T PLN02448 161 E-----------------------------------------LSESGEERVDYIPGLSSTRLSDLP-PIFHG--NSRRVL 196 (459)
T ss_pred c-----------------------------------------cccccCCccccCCCCCCCChHHCc-hhhcC--CchHHH
Confidence 0 000 00111236666666666776 33221 122334
Q ss_pred HHHHHHHHhhccccEEEEcCccccccccccc-----CCceeeecccccCCCCC-CCCCCCc-cccchhhhhhhcCCCCce
Q 010617 239 DLLERNTRAMIAVNFHFCNSTYELESEAFTT-----FPELLPIGPLLASNRLG-NTAGYFW-CEDSNCLKWLDQQQPSSV 311 (506)
Q Consensus 239 ~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~-----~p~v~~VGpl~~~~~~~-~~~~~~~-~~~~~l~~~l~~~~~~~v 311 (506)
+.+.+.+....+++.+++||+.+||+...+. .++++.|||+....... ....... ..+.++.+|++.++++++
T Consensus 197 ~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~v 276 (459)
T PLN02448 197 KRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSV 276 (459)
T ss_pred HHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCce
Confidence 4455555566788999999999999874433 24789999997542211 0000001 123479999999988999
Q ss_pred EEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEeccchhhhhcCCCcceEEe
Q 010617 312 VYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLS 391 (506)
Q Consensus 312 V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~vpq~~lL~h~~v~~~It 391 (506)
|||||||......+++++++.+|+..+++|||++..+ ..++.++.++|+++.+|+||.+||+|++|++|||
T Consensus 277 vyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~---------~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvt 347 (459)
T PLN02448 277 LYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGE---------ASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWT 347 (459)
T ss_pred EEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCc---------hhhHhHhccCCEEEeccCCHHHHhccCccceEEe
Confidence 9999999988889999999999999999999988643 1245555667899999999999999999999999
Q ss_pred ccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecC--CCCCcCHHHHHHHHHHHhCCh-----HHHHHH
Q 010617 392 HCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRD--EGGIITREEIKNKVDQVLGNQ-----DFKARA 464 (506)
Q Consensus 392 HgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~--~~~~~~~~~l~~ai~~vl~d~-----~~r~~a 464 (506)
|||+||++|||++|||||++|+++||+.||+++++.||+|+.+..+ +++.+++++|+++|+++|.|+ .+|++|
T Consensus 348 HgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a 427 (459)
T PLN02448 348 HCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRA 427 (459)
T ss_pred cCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 9999999999999999999999999999999998756999988642 124679999999999999763 799999
Q ss_pred HHHHHHHHhhhhcCCChHHHHHHHHHHHHh
Q 010617 465 LELKEKAMSSVREGGSSYKTFQNFLQWVKT 494 (506)
Q Consensus 465 ~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~ 494 (506)
+++++++++++.+||++.+++++|++++++
T Consensus 428 ~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 428 KELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 999999999999999999999999999874
No 16
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.9e-60 Score=489.70 Aligned_cols=438 Identities=28% Similarity=0.449 Sum_probs=325.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecC----CCCCCC-CCccC
Q 010617 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIP----DGMEPW-EDRND 77 (506)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~----~~~~~~-~~~~~ 77 (506)
+.||+++|+|++||++|++.||+.|+.||+.|||++++.+...+.+... ....+++++.+| ++++++ +...+
T Consensus 6 ~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~---~~~~~i~~~~lp~p~~dglp~~~~~~~~ 82 (472)
T PLN02670 6 VLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPS---QLSSSITLVSFPLPSVPGLPSSAESSTD 82 (472)
T ss_pred CcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccc---cCCCCeeEEECCCCccCCCCCCcccccc
Confidence 5799999999999999999999999999999999999988766654211 112358999888 566654 22222
Q ss_pred HH----HHHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHhhcccccc
Q 010617 78 LG----KLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLID 153 (506)
Q Consensus 78 ~~----~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~ 153 (506)
.. .++....+.+.+.++++++. .+++|||+|.+..|+..+|+++|||++.|+++++..+....+......
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~ 156 (472)
T PLN02670 83 VPYTKQQLLKKAFDLLEPPLTTFLET------SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLME 156 (472)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHh------CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhh
Confidence 21 23444555677777888776 578999999999999999999999999999999988887654322222
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCC--CCCcccccccccCCC
Q 010617 154 DGIIDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMP--EMNSRDCFWAHIGDW 231 (506)
Q Consensus 154 ~~~~~~~~~~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~ 231 (506)
.+..+.. ..+ ...+| ..+|..+ .+...+++ .+....
T Consensus 157 ~~~~~~~--~~~--~~~~p-------------------------------------~~~P~~~~~~~~~~dlp-~~~~~~ 194 (472)
T PLN02670 157 GGDLRST--AED--FTVVP-------------------------------------PWVPFESNIVFRYHEVT-KYVEKT 194 (472)
T ss_pred cccCCCc--ccc--ccCCC-------------------------------------CcCCCCccccccHHHhh-HHHhcc
Confidence 2211100 000 00000 0111111 12334444 222111
Q ss_pred chhHHHHHHHHHHHHhhccccEEEEcCcccccccccccC-----CceeeecccccCC-CCCCCCCCCccccchhhhhhhc
Q 010617 232 TSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF-----PELLPIGPLLASN-RLGNTAGYFWCEDSNCLKWLDQ 305 (506)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~-----p~v~~VGpl~~~~-~~~~~~~~~~~~~~~l~~~l~~ 305 (506)
.........+.+....+.+++.+++||+.+||....+.. +.++.|||+.... ....+........++|.+|||.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~ 274 (472)
T PLN02670 195 EEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDK 274 (472)
T ss_pred CccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhc
Confidence 111111222334444567899999999999999877664 5799999997531 1110000000112579999999
Q ss_pred CCCCceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCC-C-CCCCCChhhHHhhcCCeEEE-eccchhhhhc
Q 010617 306 QQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITT-D-ANDRYPEGFQERVAARGQMI-SWAPQLRVLN 382 (506)
Q Consensus 306 ~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~-~-~~~~lp~~~~~~~~~n~~v~-~~vpq~~lL~ 382 (506)
+++++||||||||...++.+++++++.+|+.++++|||++...... . ....+|++|.++..++++++ +|+||.+||+
T Consensus 275 ~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~ 354 (472)
T PLN02670 275 QRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILS 354 (472)
T ss_pred CCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhc
Confidence 9889999999999999999999999999999999999999853211 1 12468999999998888875 9999999999
Q ss_pred CCCcceEEeccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCC-CCCcCHHHHHHHHHHHhCCh---
Q 010617 383 HPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE-GGIITREEIKNKVDQVLGNQ--- 458 (506)
Q Consensus 383 h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~-~~~~~~~~l~~ai~~vl~d~--- 458 (506)
|++|++|||||||||++||+++|||||++|+++||+.||+++++ +|+|+.+...+ ++.++.++|+++|+++|.|+
T Consensus 355 H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~ 433 (472)
T PLN02670 355 HESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGE 433 (472)
T ss_pred CcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHHHHHHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchH
Confidence 99999999999999999999999999999999999999999998 69999997532 24589999999999999876
Q ss_pred HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHhcc
Q 010617 459 DFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTNA 496 (506)
Q Consensus 459 ~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~ 496 (506)
+||+||+++++++++ .+...+.+++|+++++.+.
T Consensus 434 ~~r~~a~~l~~~~~~----~~~~~~~~~~~~~~l~~~~ 467 (472)
T PLN02670 434 EIRDKAKEMRNLFGD----MDRNNRYVDELVHYLRENR 467 (472)
T ss_pred HHHHHHHHHHHHHhC----cchhHHHHHHHHHHHHHhc
Confidence 799999999999997 5777999999999999887
No 17
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=1.6e-59 Score=491.16 Aligned_cols=435 Identities=30% Similarity=0.529 Sum_probs=316.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCC----CCCCeEEEecC---CCCCCCCCc
Q 010617 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNY----LGEQIHLVSIP---DGMEPWEDR 75 (506)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~----~~~~i~~~~~~---~~~~~~~~~ 75 (506)
+.||+++|+|++||++|++.||+.|+.|||+|||++++.+...+++.+..... ....+.+..+| ++++++...
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e~ 84 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCEN 84 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCccc
Confidence 57999999999999999999999999999999999999988777765432111 11245556666 345543111
Q ss_pred c---------CHHHHHHHHHH---hCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHH
Q 010617 76 N---------DLGKLIEKCLQ---VMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVA 143 (506)
Q Consensus 76 ~---------~~~~~~~~~~~---~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~ 143 (506)
. +...++..+.. .+.+.++++++. .+|||||+|.+..|+..+|+++|||+++|++++++...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~------~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~ 158 (482)
T PLN03007 85 VDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLET------TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLC 158 (482)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHhc------CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHH
Confidence 1 12233333332 233333333332 57999999999999999999999999999998887766
Q ss_pred HHhhccccccCCCCCCCCCCccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCCC---CCc
Q 010617 144 LVFRIPKLIDDGIIDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPE---MNS 220 (506)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~ 220 (506)
.............. ...... ..+|+++. +..
T Consensus 159 ~~~~~~~~~~~~~~---------------------------------------------~~~~~~-~~~pg~p~~~~~~~ 192 (482)
T PLN03007 159 ASYCIRVHKPQKKV---------------------------------------------ASSSEP-FVIPDLPGDIVITE 192 (482)
T ss_pred HHHHHHhccccccc---------------------------------------------CCCCce-eeCCCCCCccccCH
Confidence 54432110000000 000000 12344431 222
Q ss_pred ccccccccCCCchhHHHHHHHHHHHHhhccccEEEEcCcccccccccccC-----CceeeecccccCCCCCC-CC--C-C
Q 010617 221 RDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF-----PELLPIGPLLASNRLGN-TA--G-Y 291 (506)
Q Consensus 221 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~-----p~v~~VGpl~~~~~~~~-~~--~-~ 291 (506)
.+++ . ......+.+.+....+...+++.+++||+.+||.+..+.+ ..+++|||+........ .. + .
T Consensus 193 ~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~ 267 (482)
T PLN03007 193 EQIN-D----ADEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKK 267 (482)
T ss_pred HhcC-C----CCCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHHHHhccCCCEEEEccccccccccccccccCCc
Confidence 2222 1 1111234444445555678899999999999998866655 36899999865322100 00 0 1
Q ss_pred CccccchhhhhhhcCCCCceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCC-CCCCCCChhhHHhhc-CCe
Q 010617 292 FWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITT-DANDRYPEGFQERVA-ARG 369 (506)
Q Consensus 292 ~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~-~~~~~lp~~~~~~~~-~n~ 369 (506)
.+..+.+|.+|++.+++++||||||||+.....+++.+++.+|+.++++|||+++..... ...+.+|++|.++.. .|+
T Consensus 268 ~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~ 347 (482)
T PLN03007 268 ANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGL 347 (482)
T ss_pred cccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCE
Confidence 112356799999999889999999999988889999999999999999999999864211 112358999988875 555
Q ss_pred EEEeccchhhhhcCCCcceEEeccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecC-----CCCCcCH
Q 010617 370 QMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRD-----EGGIITR 444 (506)
Q Consensus 370 ~v~~~vpq~~lL~h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~-----~~~~~~~ 444 (506)
++.+|+||.+||+|++|++|||||||||++||+++|||||++|+++||+.||+++++.+++|+.+..+ +...++.
T Consensus 348 ~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 427 (482)
T PLN03007 348 IIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISR 427 (482)
T ss_pred EEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccH
Confidence 66699999999999999999999999999999999999999999999999999987545666665321 1246899
Q ss_pred HHHHHHHHHHhCCh---HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHh
Q 010617 445 EEIKNKVDQVLGNQ---DFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKT 494 (506)
Q Consensus 445 ~~l~~ai~~vl~d~---~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~ 494 (506)
++|+++|+++|.|+ .||++|+++++++++++.+||+++.++++||+.+.+
T Consensus 428 ~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~l~~~v~~~~~ 480 (482)
T PLN03007 428 EKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSSFNDLNKFMEELNS 480 (482)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 99999999999887 899999999999999999999999999999999875
No 18
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=8e-60 Score=485.09 Aligned_cols=414 Identities=26% Similarity=0.449 Sum_probs=308.6
Q ss_pred CC-CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEec--C--CCCCCCCC-
Q 010617 1 MS-RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSI--P--DGMEPWED- 74 (506)
Q Consensus 1 m~-~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~--~--~~~~~~~~- 74 (506)
|+ +.||+++|+|++||++|++.||+.|++|||+|||++++.+...+.+.+. ...++++..+ + ++++.+..
T Consensus 1 ~~~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a----~~~~i~~~~l~~p~~dgLp~g~~~ 76 (442)
T PLN02208 1 MEPKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNL----FPDSIVFHPLTIPPVNGLPAGAET 76 (442)
T ss_pred CCCCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccC----CCCceEEEEeCCCCccCCCCCccc
Confidence 66 7799999999999999999999999999999999999888776655321 1224556554 3 44554422
Q ss_pred ccCHHH----HHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHhhccc
Q 010617 75 RNDLGK----LIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPK 150 (506)
Q Consensus 75 ~~~~~~----~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~ 150 (506)
..+... ++......+.+.++++++. .++||||+| +..|+..+|+++|||++.|++++++.+. +.+.+.
T Consensus 77 ~~~l~~~l~~~~~~~~~~~~~~l~~~L~~------~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~ 148 (442)
T PLN02208 77 TSDIPISMDNLLSEALDLTRDQVEAAVRA------LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG 148 (442)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhh------CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc
Confidence 222221 1222233445556666654 678999999 5789999999999999999999998654 333221
Q ss_pred cccCCCCCCCCCCccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCCC----CCccccccc
Q 010617 151 LIDDGIIDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPE----MNSRDCFWA 226 (506)
Q Consensus 151 ~~~~~~~~~~~~~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~l~~~ 226 (506)
+.. .. .+|+++. +...+++ .
T Consensus 149 ----~~~-----~~----------------------------------------------~~pglp~~~~~~~~~~~~-~ 172 (442)
T PLN02208 149 ----GKL-----GV----------------------------------------------PPPGYPSSKVLFRENDAH-A 172 (442)
T ss_pred ----ccc-----CC----------------------------------------------CCCCCCCcccccCHHHcC-c
Confidence 000 00 0122221 2233333 1
Q ss_pred ccCCCchhHHHHHHHHHHHHhhccccEEEEcCccccccccccc-----CCceeeecccccCCCCCCCCCCCccccchhhh
Q 010617 227 HIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTT-----FPELLPIGPLLASNRLGNTAGYFWCEDSNCLK 301 (506)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~-----~p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~ 301 (506)
+ . .....+.....+..+...+++.+++||+.+||....+. .|+++.|||++...... .+.+.++.+
T Consensus 173 ~--~-~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vGpl~~~~~~~------~~~~~~~~~ 243 (442)
T PLN02208 173 L--A-TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLTGPMFPEPDTS------KPLEEQWSH 243 (442)
T ss_pred c--c-ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEEeecccCcCCC------CCCHHHHHH
Confidence 1 0 01111222222333456789999999999999876543 37899999998653211 134678999
Q ss_pred hhhcCCCCceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCC-CCCCCCChhhHHhhcCCeEE-Eeccchhh
Q 010617 302 WLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITT-DANDRYPEGFQERVAARGQM-ISWAPQLR 379 (506)
Q Consensus 302 ~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~-~~~~~lp~~~~~~~~~n~~v-~~~vpq~~ 379 (506)
|||.+++++||||||||...++.+++.+++.+++..+.+++|+++.+.+. ...+.+|++|.++..++..+ .+|+||.+
T Consensus 244 wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~ 323 (442)
T PLN02208 244 FLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQPL 323 (442)
T ss_pred HHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcccchhhhCCHHHHHHHhcCCcEeeccCCHHH
Confidence 99999889999999999998899999999999888899999998754211 12346899999998765554 49999999
Q ss_pred hhcCCCcceEEeccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCCh-
Q 010617 380 VLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ- 458 (506)
Q Consensus 380 lL~h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~- 458 (506)
||+|++|++|||||||||++||+++|||||++|+++||+.||+++++.+|+|+.++.++++.++.++|+++|++++.|+
T Consensus 324 iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~ 403 (442)
T PLN02208 324 ILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDS 403 (442)
T ss_pred HhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999999999999999877646999999763223589999999999999765
Q ss_pred ----HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHhc
Q 010617 459 ----DFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTN 495 (506)
Q Consensus 459 ----~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~ 495 (506)
.+|++|+++++++.+ +|++.+++++|++++++.
T Consensus 404 e~g~~~r~~~~~~~~~~~~----~gsS~~~l~~~v~~l~~~ 440 (442)
T PLN02208 404 DLGKLVRSNHTKLKEILVS----PGLLTGYVDKFVEELQEY 440 (442)
T ss_pred hhHHHHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHh
Confidence 499999999999854 789999999999999764
No 19
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=2.1e-59 Score=479.67 Aligned_cols=419 Identities=27% Similarity=0.450 Sum_probs=317.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecC--CCCCCC-CCccCH-
Q 010617 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIP--DGMEPW-EDRNDL- 78 (506)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~--~~~~~~-~~~~~~- 78 (506)
|.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+.+. +.......+.+..+| ++++++ +...++
T Consensus 5 ~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~--~~~~~~~~v~~~~~p~~~glp~g~e~~~~~~ 82 (453)
T PLN02764 5 KFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL--NLFPHNIVFRSVTVPHVDGLPVGTETVSEIP 82 (453)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc--ccCCCCceEEEEECCCcCCCCCcccccccCC
Confidence 78999999999999999999999999999999999999877655442 100111237777787 566554 221111
Q ss_pred ---HHHHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHhhccccccCC
Q 010617 79 ---GKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDG 155 (506)
Q Consensus 79 ---~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~ 155 (506)
...+....+.+.+.++++++. .++||||+|+ ..|+.++|+++|||.+.|+++++..+..... + .+
T Consensus 83 ~~~~~~~~~a~~~~~~~~~~~l~~------~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~----~~ 150 (453)
T PLN02764 83 VTSADLLMSAMDLTRDQVEVVVRA------VEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-P----GG 150 (453)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHh------CCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-c----cc
Confidence 122333333556777777776 5789999995 7899999999999999999999988776542 1 00
Q ss_pred CCCCCCCCccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCC----CCCcccccccccC--
Q 010617 156 IIDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMP----EMNSRDCFWAHIG-- 229 (506)
Q Consensus 156 ~~~~~~~~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~~~l~~~~~~-- 229 (506)
.. +.| +|+++ .+...+++. +..
T Consensus 151 ~~-----~~~----------------------------------------------~pglp~~~v~l~~~~l~~-~~~~~ 178 (453)
T PLN02764 151 EL-----GVP----------------------------------------------PPGYPSSKVLLRKQDAYT-MKNLE 178 (453)
T ss_pred cC-----CCC----------------------------------------------CCCCCCCcccCcHhhCcc-hhhcC
Confidence 00 000 12222 122233331 110
Q ss_pred CCchhHHHHHHHHHHHHhhccccEEEEcCcccccccccccC-----CceeeecccccCCCCCCCCCCCccccchhhhhhh
Q 010617 230 DWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF-----PELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLD 304 (506)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~-----p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~l~ 304 (506)
.............+..+...+++.+++||+.+||..+.+.. ++++.|||++...... ...+.+|.+|||
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPL~~~~~~~------~~~~~~cl~WLD 252 (453)
T PLN02764 179 PTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHCRKKVLLTGPVFPEPDKT------RELEERWVKWLS 252 (453)
T ss_pred CCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhcCCcEEEeccCccCcccc------ccchhHHHHHHh
Confidence 00111123334444445667899999999999998876654 5699999997543111 113567999999
Q ss_pred cCCCCceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCC-CCCCCCChhhHHhhcCCeEEE-eccchhhhhc
Q 010617 305 QQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITT-DANDRYPEGFQERVAARGQMI-SWAPQLRVLN 382 (506)
Q Consensus 305 ~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~-~~~~~lp~~~~~~~~~n~~v~-~~vpq~~lL~ 382 (506)
.+++++||||||||...+..+++.+++.+|+..+.+|+|++...... ...+.+|++|.+|..+++.++ +|+||.+||+
T Consensus 253 ~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~ 332 (453)
T PLN02764 253 GYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILS 332 (453)
T ss_pred CCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhc
Confidence 99999999999999988999999999999999999999999853221 123469999999998888776 9999999999
Q ss_pred CCCcceEEeccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCCh----
Q 010617 383 HPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ---- 458 (506)
Q Consensus 383 h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~---- 458 (506)
|++|++|||||||||++||+++|||||++|+++||+.||+++++.+|+|+.+..++.+.++.++|+++|+++|.++
T Consensus 333 h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g 412 (453)
T PLN02764 333 HPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIG 412 (453)
T ss_pred CcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhH
Confidence 9999999999999999999999999999999999999999996547999988642223689999999999999764
Q ss_pred -HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHhccc
Q 010617 459 -DFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTNAL 497 (506)
Q Consensus 459 -~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~ 497 (506)
.+|++++++++++++ ||++..++++|++++.+...
T Consensus 413 ~~~r~~a~~~~~~~~~----~GSS~~~l~~lv~~~~~~~~ 448 (453)
T PLN02764 413 NLVKKNHTKWRETLAS----PGLLTGYVDNFIESLQDLVS 448 (453)
T ss_pred HHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHhcc
Confidence 389999999999965 89999999999999998764
No 20
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=3.6e-59 Score=483.79 Aligned_cols=440 Identities=29% Similarity=0.518 Sum_probs=321.6
Q ss_pred CC-CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecC-----CCCCCC-C
Q 010617 1 MS-RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIP-----DGMEPW-E 73 (506)
Q Consensus 1 m~-~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~-----~~~~~~-~ 73 (506)
|+ +.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+.............++|+.+| ++++++ +
T Consensus 5 ~~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~ 84 (491)
T PLN02534 5 KAKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCE 84 (491)
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCcc
Confidence 55 4699999999999999999999999999999999999988776665432211111248999887 566654 2
Q ss_pred CccCH--HHHHH---HHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHhhc
Q 010617 74 DRNDL--GKLIE---KCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRI 148 (506)
Q Consensus 74 ~~~~~--~~~~~---~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~ 148 (506)
...++ ..++. .....+.+.+++++... ..++||||+|.+..|+..+|+++|||.+.|++++++.......+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~----~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~ 160 (491)
T PLN02534 85 NLDTLPSRDLLRKFYDAVDKLQQPLERFLEQA----KPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNI 160 (491)
T ss_pred ccccCCcHHHHHHHHHHHHHhHHHHHHHHHhc----CCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHH
Confidence 11211 12222 23334566677777643 14689999999999999999999999999999999887654332
Q ss_pred cccccCCCCCCCCCCccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCCC---CCcccccc
Q 010617 149 PKLIDDGIIDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPE---MNSRDCFW 225 (506)
Q Consensus 149 ~~~~~~~~~~~~~~~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~l~~ 225 (506)
........ .+. ......+|+++. +...+++
T Consensus 161 ~~~~~~~~---------------------------------------------~~~-~~~~~~iPg~p~~~~l~~~dlp- 193 (491)
T PLN02534 161 RLHNAHLS---------------------------------------------VSS-DSEPFVVPGMPQSIEITRAQLP- 193 (491)
T ss_pred HHhccccc---------------------------------------------CCC-CCceeecCCCCccccccHHHCC-
Confidence 11000000 000 001123566552 5556665
Q ss_pred cccCCCchhHHHHHHHHHHHH-hhccccEEEEcCcccccccccccC-----CceeeecccccCCCCCCCC---CCCcc-c
Q 010617 226 AHIGDWTSQKIFFDLLERNTR-AMIAVNFHFCNSTYELESEAFTTF-----PELLPIGPLLASNRLGNTA---GYFWC-E 295 (506)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ns~~~le~~~~~~~-----p~v~~VGpl~~~~~~~~~~---~~~~~-~ 295 (506)
........ . +.+...+. ....++.+++||+.+||+...+.. ++++.|||+........+. +.... .
T Consensus 194 ~~~~~~~~---~-~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~ 269 (491)
T PLN02534 194 GAFVSLPD---L-DDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIKKKVWCVGPVSLCNKRNLDKFERGNKASID 269 (491)
T ss_pred hhhcCccc---H-HHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcCCcEEEECcccccccccccccccCCccccc
Confidence 22211111 1 11222222 234577999999999998755432 5799999997532111000 11111 2
Q ss_pred cchhhhhhhcCCCCceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCC--CCCCCChhhHHhhc-CCeEEE
Q 010617 296 DSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTD--ANDRYPEGFQERVA-ARGQMI 372 (506)
Q Consensus 296 ~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~--~~~~lp~~~~~~~~-~n~~v~ 372 (506)
+.+|.+|||.+++++||||||||......+++.+++.+|+.++++|||++....... ....+|++|.++.. .++++.
T Consensus 270 ~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~ 349 (491)
T PLN02534 270 ETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIK 349 (491)
T ss_pred hHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHhhccCCeecc
Confidence 356999999999899999999999999999999999999999999999998431110 11246899988865 444556
Q ss_pred eccchhhhhcCCCcceEEeccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecC-------CC--C-Cc
Q 010617 373 SWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRD-------EG--G-II 442 (506)
Q Consensus 373 ~~vpq~~lL~h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~-------~~--~-~~ 442 (506)
+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++.||+|+.+..+ ++ + .+
T Consensus 350 ~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v 429 (491)
T PLN02534 350 GWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLV 429 (491)
T ss_pred CCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCcc
Confidence 99999999999999999999999999999999999999999999999999998778999988521 11 1 47
Q ss_pred CHHHHHHHHHHHhC---C--hHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHhc
Q 010617 443 TREEIKNKVDQVLG---N--QDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTN 495 (506)
Q Consensus 443 ~~~~l~~ai~~vl~---d--~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~ 495 (506)
++++|.++|+++|. + ..+|+||+++++++++++.+||||.+++++||+++.+.
T Consensus 430 ~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl~~fv~~i~~~ 487 (491)
T PLN02534 430 KKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINLSILIQDVLKQ 487 (491)
T ss_pred CHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 99999999999995 2 38999999999999999999999999999999999753
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=7.4e-59 Score=478.47 Aligned_cols=420 Identities=27% Similarity=0.441 Sum_probs=309.0
Q ss_pred CC-CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecC----CCCCCC-CC
Q 010617 1 MS-RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIP----DGMEPW-ED 74 (506)
Q Consensus 1 m~-~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~----~~~~~~-~~ 74 (506)
|. +.||+++|+|++||++|++.||+.|+++|++|||++++.+...+.+... ...+++|..++ ++++++ +.
T Consensus 1 ~~~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~----~~~~i~~~~i~lP~~dGLP~g~e~ 76 (446)
T PLN00414 1 MGSKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNL----FPDSIVFEPLTLPPVDGLPFGAET 76 (446)
T ss_pred CCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccccc----CCCceEEEEecCCCcCCCCCcccc
Confidence 65 7899999999999999999999999999999999999988776654321 11257785543 455554 22
Q ss_pred ccCHHH----HHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHhhccc
Q 010617 75 RNDLGK----LIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPK 150 (506)
Q Consensus 75 ~~~~~~----~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~ 150 (506)
..++.. .+....+...+.+++++.. .+|||||+|+ ..|+..+|+++|||++.|+++++..+....+. .
T Consensus 77 ~~~l~~~~~~~~~~a~~~l~~~l~~~L~~------~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~-~ 148 (446)
T PLN00414 77 ASDLPNSTKKPIFDAMDLLRDQIEAKVRA------LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAP-R 148 (446)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhc------CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCc-H
Confidence 222211 1122222334444444433 5789999995 78999999999999999999999888866541 1
Q ss_pred cccCCCCCCCCCCccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCCCCCcccccc-cccC
Q 010617 151 LIDDGIIDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFW-AHIG 229 (506)
Q Consensus 151 ~~~~~~~~~~~~~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~~~ 229 (506)
.. .+.| + | |++... . .+...+... .+.
T Consensus 149 --~~-------~~~~--~---p----------------------------g~p~~~-~--------~~~~~~~~~~~~~- 176 (446)
T PLN00414 149 --AE-------LGFP--P---P----------------------------DYPLSK-V--------ALRGHDANVCSLF- 176 (446)
T ss_pred --hh-------cCCC--C---C----------------------------CCCCCc-C--------cCchhhcccchhh-
Confidence 00 0000 0 0 111100 0 010111100 101
Q ss_pred CCchhHHHHHHHHHHHHhhccccEEEEcCcccccccccccC-----CceeeecccccCCCCCCCCCCCccccchhhhhhh
Q 010617 230 DWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF-----PELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLD 304 (506)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~-----p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~l~ 304 (506)
.. ..+.+.+..+...+++.+++||+.+||....+.. +.++.|||+....... .+ ...+.+|.+|||
T Consensus 177 ~~-----~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPl~~~~~~~--~~--~~~~~~~~~WLD 247 (446)
T PLN00414 177 AN-----SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLLTGPMLPEPQNK--SG--KPLEDRWNHWLN 247 (446)
T ss_pred cc-----cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeEEEcccCCCcccc--cC--cccHHHHHHHHh
Confidence 00 1123334445667899999999999998877654 4689999997543211 01 123457999999
Q ss_pred cCCCCceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCC-CCCCCCChhhHHhhcCCeEEE-eccchhhhhc
Q 010617 305 QQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITT-DANDRYPEGFQERVAARGQMI-SWAPQLRVLN 382 (506)
Q Consensus 305 ~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~-~~~~~lp~~~~~~~~~n~~v~-~~vpq~~lL~ 382 (506)
.+++++||||||||......+++.+++.+|+..+.+|+|++....+. ...+.+|++|.+++.++++++ +|+||.+||+
T Consensus 248 ~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~ 327 (446)
T PLN00414 248 GFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILS 327 (446)
T ss_pred cCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHHHhc
Confidence 99999999999999999999999999999999999999999764221 123469999999999999887 9999999999
Q ss_pred CCCcceEEeccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCCh----
Q 010617 383 HPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ---- 458 (506)
Q Consensus 383 h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~---- 458 (506)
|+++++|||||||||++||+++|||||++|++.||+.||+++++.+|+|+.+..++++.+++++|+++|+++|.|+
T Consensus 328 h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g 407 (446)
T PLN00414 328 HPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIG 407 (446)
T ss_pred CCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhH
Confidence 9999999999999999999999999999999999999999997447999999753223589999999999999764
Q ss_pred -HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHhccc
Q 010617 459 -DFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTNAL 497 (506)
Q Consensus 459 -~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~ 497 (506)
.+|++|+++++++.+ +||++.. +++||++++...+
T Consensus 408 ~~~r~~a~~~~~~~~~---~gg~ss~-l~~~v~~~~~~~~ 443 (446)
T PLN00414 408 NLVKRNHKKLKETLVS---PGLLSGY-ADKFVEALENEVN 443 (446)
T ss_pred HHHHHHHHHHHHHHHc---CCCcHHH-HHHHHHHHHHhcc
Confidence 499999999999865 5774533 8999999976544
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=3.2e-55 Score=459.51 Aligned_cols=422 Identities=17% Similarity=0.220 Sum_probs=312.0
Q ss_pred CCEEEEE-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCC----Cc--
Q 010617 3 RPRVLVM-PAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWE----DR-- 75 (506)
Q Consensus 3 ~~~il~~-~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~-- 75 (506)
.+|||++ |.++.||+..+.+++++|++|||+||++++.... ..... ...+++.+.++....... ..
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~-~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRV-YYASH------LCGNITEIDASLSVEYFKKLVKSSAV 92 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEeccccc-ccccC------CCCCEEEEEcCCChHHHHHHHhhhhH
Confidence 4688855 8899999999999999999999999999775321 11100 113566665542111100 00
Q ss_pred ----c---CHHH----HHHHHHHhCcHHH--HHHHHHHhcCCCCCccEEEecCCcchHHHHHHHc-CCceEEEccchHHH
Q 010617 76 ----N---DLGK----LIEKCLQVMPGKL--EELIEEINSREDEKIDCFIADGNIGWSMEIAKKM-NVRGAVFWPSSAAS 141 (506)
Q Consensus 76 ----~---~~~~----~~~~~~~~~~~~~--~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~l-gIP~v~~~~~~~~~ 141 (506)
. +... ....+...|...+ .++.+.|+. .+.++|+||+|.+..|+..+|+.+ ++|.|.+++.....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~-~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~ 171 (507)
T PHA03392 93 FRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIAN-KNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLA 171 (507)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhc-CCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCch
Confidence 0 0000 1111122333222 122333331 127899999999888999999999 99998887755443
Q ss_pred HHHHhhccccccCCCCCCCCCC-ccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCCCCCc
Q 010617 142 VALVFRIPKLIDDGIIDSHGMI-PCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNS 220 (506)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~-~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 220 (506)
.... .+| +|.+|+|+|..++. +.+.|++++|+.|+.....
T Consensus 172 ~~~~---------------~~gg~p~~~syvP~~~~~------------------------~~~~Msf~~R~~N~~~~~~ 212 (507)
T PHA03392 172 ENFE---------------TMGAVSRHPVYYPNLWRS------------------------KFGNLNVWETINEIYTELR 212 (507)
T ss_pred hHHH---------------hhccCCCCCeeeCCcccC------------------------CCCCCCHHHHHHHHHHHHH
Confidence 3211 236 99999999998874 6688999999988642111
Q ss_pred ccccccccCCCchhHHHHHHHHH----HHHhhccccEEEEcCcccccccccccCCceeeecccccCCCCCCCCCCCcccc
Q 010617 221 RDCFWAHIGDWTSQKIFFDLLER----NTRAMIAVNFHFCNSTYELESEAFTTFPELLPIGPLLASNRLGNTAGYFWCED 296 (506)
Q Consensus 221 ~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~ns~~~le~~~~~~~p~v~~VGpl~~~~~~~~~~~~~~~~~ 296 (506)
....+.... +..+....+.+.. ..+...+.+++|+|+.+.+|++ ++++|++++|||++.+.... .+.+
T Consensus 213 ~~~~~~~~~-~~~~~l~~~~f~~~~~~~~~l~~~~~l~lvns~~~~d~~-rp~~p~v~~vGgi~~~~~~~------~~l~ 284 (507)
T PHA03392 213 LYNEFSLLA-DEQNKLLKQQFGPDTPTIRELRNRVQLLFVNVHPVFDNN-RPVPPSVQYLGGLHLHKKPP------QPLD 284 (507)
T ss_pred HHHHHHHhh-HHHHHHHHHHcCCCCCCHHHHHhCCcEEEEecCccccCC-CCCCCCeeeecccccCCCCC------CCCC
Confidence 111111111 2233333444321 2234467899999999999999 89999999999998754221 3578
Q ss_pred chhhhhhhcCCCCceEEEEeCccc---cCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEe
Q 010617 297 SNCLKWLDQQQPSSVVYVSFGSFT---ILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMIS 373 (506)
Q Consensus 297 ~~l~~~l~~~~~~~vV~vs~GS~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~ 373 (506)
+++.+|++.++ +++|||||||.. ..+.++++.+++|+++.+.+|||+++... .+ ...++|+++.+
T Consensus 285 ~~l~~fl~~~~-~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~-------~~----~~~p~Nv~i~~ 352 (507)
T PHA03392 285 DYLEEFLNNST-NGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEV-------EA----INLPANVLTQK 352 (507)
T ss_pred HHHHHHHhcCC-CcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCc-------Cc----ccCCCceEEec
Confidence 88999999875 689999999984 35789999999999999999999997541 11 12467899999
Q ss_pred ccchhhhhcCCCcceEEeccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHH
Q 010617 374 WAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQ 453 (506)
Q Consensus 374 ~vpq~~lL~h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~ 453 (506)
|+||.+||+|++|++||||||+||++||+++|||+|++|+++||+.||+|+++ +|+|+.+++ ..++.++|.++|++
T Consensus 353 w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~-~G~G~~l~~---~~~t~~~l~~ai~~ 428 (507)
T PHA03392 353 WFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVE-LGIGRALDT---VTVSAAQLVLAIVD 428 (507)
T ss_pred CCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHH-cCcEEEecc---CCcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 599999987 77899999999999
Q ss_pred HhCChHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHhcc-cc
Q 010617 454 VLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTNA-LA 498 (506)
Q Consensus 454 vl~d~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~-~~ 498 (506)
+++|++||++|+++++.+++ +.-+..+.+..++|++.++. +.
T Consensus 429 vl~~~~y~~~a~~ls~~~~~---~p~~~~~~av~~iE~v~r~~~g~ 471 (507)
T PHA03392 429 VIENPKYRKNLKELRHLIRH---QPMTPLHKAIWYTEHVIRNKHGN 471 (507)
T ss_pred HhCCHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhCCCCc
Confidence 99999999999999999998 35456888889999998876 44
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.1e-55 Score=469.19 Aligned_cols=421 Identities=23% Similarity=0.305 Sum_probs=252.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCc---cC----
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDR---ND---- 77 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~---- 77 (506)
|||++|+ ++||+.++..|+++|++|||+||++++.... .+... ...++++..++...+..+.. .+
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPS------KPSNIRFETYPDPYPEEEFEEIFPEFISK 73 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T------------S-CCEEEE-----TT------TTHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-ccccc------cccceeeEEEcCCcchHHHhhhhHHHHHH
Confidence 6888884 7899999999999999999999999874322 22211 12366777766544433211 11
Q ss_pred ----------HHHHHHH---H----HHhCcHHH--HHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccch
Q 010617 78 ----------LGKLIEK---C----LQVMPGKL--EELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSS 138 (506)
Q Consensus 78 ----------~~~~~~~---~----~~~~~~~~--~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~~ 138 (506)
....+.. + ...|...+ .++++.++. .++|++|+|.+..|+..+|+.+|||.+.+.+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~---~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~ 150 (500)
T PF00201_consen 74 FFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS---EKFDLVISDAFDPCGLALAHYLGIPVIIISSST 150 (500)
T ss_dssp HHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH---HHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCC
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---hccccceEeeccchhHHHHHHhcCCeEEEeccc
Confidence 0011111 0 11121111 122233333 689999999998899999999999998754432
Q ss_pred HHHHHHHhhccccccCCCCCCCCCCccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCCCC
Q 010617 139 AASVALVFRIPKLIDDGIIDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEM 218 (506)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 218 (506)
... .......|.|.+|+|+|..++. +++.|++++|+.|+...
T Consensus 151 ~~~--------------~~~~~~~g~p~~psyvP~~~s~------------------------~~~~msf~~Ri~N~l~~ 192 (500)
T PF00201_consen 151 PMY--------------DLSSFSGGVPSPPSYVPSMFSD------------------------FSDRMSFWQRIKNFLFY 192 (500)
T ss_dssp SCS--------------CCTCCTSCCCTSTTSTTCBCCC------------------------SGTTSSSST--TTSHHH
T ss_pred ccc--------------hhhhhccCCCCChHHhcccccc------------------------CCCccchhhhhhhhhhh
Confidence 210 1111223889999999998874 56778888888775421
Q ss_pred CcccccccccCCCchhHHHHHHH---HHHHHhhccccEEEEcCcccccccccccCCceeeecccccCCCCCCCCCCCccc
Q 010617 219 NSRDCFWAHIGDWTSQKIFFDLL---ERNTRAMIAVNFHFCNSTYELESEAFTTFPELLPIGPLLASNRLGNTAGYFWCE 295 (506)
Q Consensus 219 ~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~ns~~~le~~~~~~~p~v~~VGpl~~~~~~~~~~~~~~~~ 295 (506)
....+........ .+....+.. ....+.+.+.+++++|+.+.+|+| +|.+|++.+||+++..... +.
T Consensus 193 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~ns~~~ld~p-rp~~p~v~~vGgl~~~~~~--------~l 262 (500)
T PF00201_consen 193 LYFRFIFRYFFSP-QDKLYKKYFGFPFSFRELLSNASLVLINSHPSLDFP-RPLLPNVVEVGGLHIKPAK--------PL 262 (500)
T ss_dssp HHHHHHHHHGGGS--TTS-EEESS-GGGCHHHHHHHHHCCSSTEEE-----HHHHCTSTTGCGC-S------------TC
T ss_pred hhhccccccchhh-HHHHHhhhcccccccHHHHHHHHHHhhhccccCcCC-cchhhcccccCcccccccc--------cc
Confidence 1111100100000 000000000 011233456788999999999999 9999999999999877554 36
Q ss_pred cchhhhhhhcCCCCceEEEEeCcccc-CCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEec
Q 010617 296 DSNCLKWLDQQQPSSVVYVSFGSFTI-LDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISW 374 (506)
Q Consensus 296 ~~~l~~~l~~~~~~~vV~vs~GS~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~ 374 (506)
+.++..|++...++++|||||||... ++.+..+.+++||++++++|||++.+. +. +.+++|+++.+|
T Consensus 263 ~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~---------~~---~~l~~n~~~~~W 330 (500)
T PF00201_consen 263 PEELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGE---------PP---ENLPKNVLIVKW 330 (500)
T ss_dssp HHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCS---------HG---CHHHTTEEEESS
T ss_pred ccccchhhhccCCCCEEEEecCcccchhHHHHHHHHHHHHhhCCCccccccccc---------cc---ccccceEEEecc
Confidence 77888999985568999999999865 445558889999999999999999653 11 124688999999
Q ss_pred cchhhhhcCCCcceEEeccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHH
Q 010617 375 APQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQV 454 (506)
Q Consensus 375 vpq~~lL~h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~v 454 (506)
+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+|+++. |+|+.+++ ..+|.++|.++|+++
T Consensus 331 ~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~-G~g~~l~~---~~~~~~~l~~ai~~v 406 (500)
T PF00201_consen 331 LPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEK-GVGVVLDK---NDLTEEELRAAIREV 406 (500)
T ss_dssp --HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHT-TSEEEEGG---GC-SHHHHHHHHHHH
T ss_pred ccchhhhhcccceeeeeccccchhhhhhhccCCccCCCCcccCCccceEEEEE-eeEEEEEe---cCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999995 99999998 779999999999999
Q ss_pred hCChHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHhcccc-CCCCC
Q 010617 455 LGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTNALA-HNSPV 503 (506)
Q Consensus 455 l~d~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~-~~~~~ 503 (506)
|+|++||+||+++++.+++ ..-+..+.+..++|++.++.+. |..+.
T Consensus 407 l~~~~y~~~a~~ls~~~~~---~p~~p~~~~~~~ie~v~~~~~~~~l~~~ 453 (500)
T PF00201_consen 407 LENPSYKENAKRLSSLFRD---RPISPLERAVWWIEYVARHGGAPHLRSP 453 (500)
T ss_dssp HHSHHHHHHHHHHHHTTT--------------------------------
T ss_pred HhhhHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhcCCCcccCCh
Confidence 9999999999999999998 3556678888888888887644 44443
No 24
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=6.4e-44 Score=378.85 Aligned_cols=433 Identities=29% Similarity=0.453 Sum_probs=294.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCC---CCCCCeEEEecCCCCCCCCCcc--C
Q 010617 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKN---YLGEQIHLVSIPDGMEPWEDRN--D 77 (506)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~--~ 77 (506)
+.+++++++|++||++|+..||+.|+++||+||++++............... .....+.+...+++.+...... .
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDDDLD 84 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHHHHHH
Confidence 4678888889999999999999999999999999999776654432100000 0001122222222222221110 1
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcC-CceEEEccchHHHHHHHhhccccccCCC
Q 010617 78 LGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMN-VRGAVFWPSSAASVALVFRIPKLIDDGI 156 (506)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lg-IP~v~~~~~~~~~~~~~~~~~~~~~~~~ 156 (506)
.......+...|...+++.+..+......++|++|+|.+..+...++...+ |+..++.+..+....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------------- 151 (496)
T KOG1192|consen 85 ISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLA------------- 151 (496)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHh-------------
Confidence 111134445556666666554444332244999999998667777777765 998888887776544
Q ss_pred CCCCCCCccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCCCCCcccccccccCCCchhHH
Q 010617 157 IDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKI 236 (506)
Q Consensus 157 ~~~~~~~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 236 (506)
+|.|.+.+|+|..++.++ + ..+.++.+.+++.......+.............
T Consensus 152 -----~g~~~~~~~~p~~~~~~~---------------------~--~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 203 (496)
T KOG1192|consen 152 -----LGLPSPLSYVPSPFSLSS---------------------G--DDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKI 203 (496)
T ss_pred -----cCCcCcccccCcccCccc---------------------c--ccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 477788889998765432 0 344444444443211111111000000011111
Q ss_pred HHHHHH-------HHHHhhccccEEEEcCcccccccccccCCceeeecccccCCCCCCCCCCCccccchhhhhhhcCCCC
Q 010617 237 FFDLLE-------RNTRAMIAVNFHFCNSTYELESEAFTTFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPS 309 (506)
Q Consensus 237 ~~~~~~-------~~~~~~~~~~~~l~ns~~~le~~~~~~~p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 309 (506)
...... ...+...+.++.++|+.+.++...++..+++++|||+....... +. ....+|++..+..
T Consensus 204 ~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~~~~~~~~~~~v~~IG~l~~~~~~~------~~--~~~~~wl~~~~~~ 275 (496)
T KOG1192|consen 204 SKELLGDILNWKPTASGIIVNASFIFLNSNPLLDFEPRPLLPKVIPIGPLHVKDSKQ------KS--PLPLEWLDILDES 275 (496)
T ss_pred HHHhCCCcccccccHHHhhhcCeEEEEccCcccCCCCCCCCCCceEECcEEecCccc------cc--cccHHHHHHHhhc
Confidence 111111 11133467779999999999885477889999999999984432 11 1344666655444
Q ss_pred --ceEEEEeCccc---cCCHHHHHHHHHHHhhC-CCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEeccchhhh-hc
Q 010617 310 --SVVYVSFGSFT---ILDQVQFQELALGLELC-KRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRV-LN 382 (506)
Q Consensus 310 --~vV~vs~GS~~---~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~vpq~~l-L~ 382 (506)
++|||||||+. .++.++...++.|++.. ++.|+|++.... ...+++++.++-++|+...+|+||.++ |.
T Consensus 276 ~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~----~~~~~~~~~~~~~~nV~~~~W~PQ~~lll~ 351 (496)
T KOG1192|consen 276 RHSVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPDD----SIYFPEGLPNRGRGNVVLSKWAPQNDLLLD 351 (496)
T ss_pred cCCeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecCCc----chhhhhcCCCCCcCceEEecCCCcHHHhcC
Confidence 89999999997 79999999999999999 888999998651 111334433223467888899999999 59
Q ss_pred CCCcceEEeccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCChHHHH
Q 010617 383 HPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKA 462 (506)
Q Consensus 383 h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~~~r~ 462 (506)
|+++++||||||+||++|++++|||+|++|+++||+.||+++++. |.|..+.+ ..++..++.+++.+++.+++|++
T Consensus 352 H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~-g~~~v~~~---~~~~~~~~~~~~~~il~~~~y~~ 427 (496)
T KOG1192|consen 352 HPAVGGFVTHGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVRH-GGGGVLDK---RDLVSEELLEAIKEILENEEYKE 427 (496)
T ss_pred CCcCcEEEECCcccHHHHHHhcCCceecCCccccchhHHHHHHhC-CCEEEEeh---hhcCcHHHHHHHHHHHcChHHHH
Confidence 999999999999999999999999999999999999999999997 66666665 45666669999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCChHHHHHHHHHHHHhcc
Q 010617 463 RALELKEKAMSSVREGGSSYKTFQNFLQWVKTNA 496 (506)
Q Consensus 463 ~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~ 496 (506)
+|+++++..++ +..+. +.+..+++...+..
T Consensus 428 ~~~~l~~~~~~---~p~~~-~~~~~~~e~~~~~~ 457 (496)
T KOG1192|consen 428 AAKRLSEILRD---QPISP-ELAVKWVEFVARHG 457 (496)
T ss_pred HHHHHHHHHHc---CCCCH-HHHHHHHHHHHhcC
Confidence 99999999997 46666 77776666666544
No 25
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=5.9e-42 Score=352.88 Aligned_cols=375 Identities=21% Similarity=0.280 Sum_probs=264.5
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCC-CC----ccCHHHHHHH
Q 010617 10 PAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPW-ED----RNDLGKLIEK 84 (506)
Q Consensus 10 ~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~-~~----~~~~~~~~~~ 84 (506)
.+|+.||++|++.||++|++|||+|+|++++.+.+.+++. |+.|..++...... .. ..++...++.
T Consensus 2 ~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (392)
T TIGR01426 2 NIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA---------GAEFVLYGSALPPPDNPPENTEEEPIDIIEK 72 (392)
T ss_pred CCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc---------CCEEEecCCcCccccccccccCcchHHHHHH
Confidence 5789999999999999999999999999999999999886 78888887544321 11 1233444555
Q ss_pred HHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHhhccccccCCCCCCCCCCc
Q 010617 85 CLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSHGMIP 164 (506)
Q Consensus 85 ~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (506)
+...+...+..+.+.++. .+||+||+|.+.+++..+|+.+|||+|.+++.+..... .
T Consensus 73 ~~~~~~~~~~~l~~~~~~---~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~----~---------------- 129 (392)
T TIGR01426 73 LLDEAEDVLPQLEEAYKG---DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANEE----F---------------- 129 (392)
T ss_pred HHHHHHHHHHHHHHHhcC---CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccccc----c----------------
Confidence 555555555666665554 79999999998889999999999999998654321100 0
Q ss_pred cccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCCCCCcccccccccCCCchhHHHHHHHHHH
Q 010617 165 CHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERN 244 (506)
Q Consensus 165 p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 244 (506)
+...|+... +..... .. ... ... ...+...+...+.
T Consensus 130 ---~~~~~~~~~------------------------~~~~~~----~~--~~~----~~~-------~~~~~~~~~r~~~ 165 (392)
T TIGR01426 130 ---EEMVSPAGE------------------------GSAEEG----AI--AER----GLA-------EYVARLSALLEEH 165 (392)
T ss_pred ---cccccccch------------------------hhhhhh----cc--ccc----hhH-------HHHHHHHHHHHHh
Confidence 000000000 000000 00 000 000 0000000110000
Q ss_pred ------HH--hhccccEEEEcCcccccccccccCCceeeecccccCCCCCCCCCCCccccchhhhhhhcCCCCceEEEEe
Q 010617 245 ------TR--AMIAVNFHFCNSTYELESEAFTTFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSF 316 (506)
Q Consensus 245 ------~~--~~~~~~~~l~ns~~~le~~~~~~~p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~ 316 (506)
.. .....+..+..+.+.|+++...+++++.++||+....... ..|.....++++||||+
T Consensus 166 gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~Gp~~~~~~~~-------------~~~~~~~~~~~~v~vs~ 232 (392)
T TIGR01426 166 GITTPPVEFLAAPRRDLNLVYTPKAFQPAGETFDDSFTFVGPCIGDRKED-------------GSWERPGDGRPVVLISL 232 (392)
T ss_pred CCCCCCHHHHhcCCcCcEEEeCChHhCCCccccCCCeEEECCCCCCcccc-------------CCCCCCCCCCCEEEEec
Confidence 00 1123344677778888887567788999999987543211 13565556688999999
Q ss_pred CccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEeccchhhhhcCCCcceEEeccCch
Q 010617 317 GSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLSHCGWN 396 (506)
Q Consensus 317 GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~vpq~~lL~h~~v~~~ItHgG~~ 396 (506)
||......++++.+++++.+.+.+++|..+..... ..+ +..++|+.+.+|+||.++|.++++ +|||||+|
T Consensus 233 Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~-------~~~-~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~ 302 (392)
T TIGR01426 233 GTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDP-------ADL-GELPPNVEVRQWVPQLEILKKADA--FITHGGMN 302 (392)
T ss_pred CccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCCh-------hHh-ccCCCCeEEeCCCCHHHHHhhCCE--EEECCCch
Confidence 99866667789999999999999999988654110 111 124678889999999999988776 99999999
Q ss_pred hHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhh
Q 010617 397 STMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVR 476 (506)
Q Consensus 397 sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~~~r~~a~~l~~~~~~~~~ 476 (506)
|++||+++|+|+|++|...||..||+++++ +|+|..+.. ..+++++|.++|.+++.|++|+++++++++++++.
T Consensus 303 t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~-~g~g~~l~~---~~~~~~~l~~ai~~~l~~~~~~~~~~~l~~~~~~~-- 376 (392)
T TIGR01426 303 STMEALFNGVPMVAVPQGADQPMTARRIAE-LGLGRHLPP---EEVTAEKLREAVLAVLSDPRYAERLRKMRAEIREA-- 376 (392)
T ss_pred HHHHHHHhCCCEEecCCcccHHHHHHHHHH-CCCEEEecc---ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHc--
Confidence 999999999999999999999999999999 599999875 67899999999999999999999999999999973
Q ss_pred cCCChHHHHHHHHHHH
Q 010617 477 EGGSSYKTFQNFLQWV 492 (506)
Q Consensus 477 ~gg~~~~~~~~~~~~~ 492 (506)
+| .+.+.++++.+
T Consensus 377 -~~--~~~aa~~i~~~ 389 (392)
T TIGR01426 377 -GG--ARRAADEIEGF 389 (392)
T ss_pred -CC--HHHHHHHHHHh
Confidence 44 34444555444
No 26
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=1.1e-41 Score=352.00 Aligned_cols=376 Identities=16% Similarity=0.150 Sum_probs=258.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCC---C------
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWE---D------ 74 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~---~------ 74 (506)
|||+|++.|+.||++|+++||++|++|||+|+|++++.+...++.. |++|.++++...... .
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA---------GLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc---------CCceeeCCCCHHHHHhhhhhccccc
Confidence 6999999999999999999999999999999999999888888875 788888875432210 0
Q ss_pred ---ccCHHHHHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHhhcccc
Q 010617 75 ---RNDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKL 151 (506)
Q Consensus 75 ---~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~ 151 (506)
..........+...+...++++++.++. ++||+||+|.+.+++..+|+++|||++.+++++....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~--------- 139 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARD---WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPT--------- 139 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCcc---------
Confidence 0112223344445556667777776655 8999999999888999999999999999887643210
Q ss_pred ccCCCCCCCCCCccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCCCCCcccccccccCCC
Q 010617 152 IDDGIIDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDW 231 (506)
Q Consensus 152 ~~~~~~~~~~~~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 231 (506)
++.|+.. +... ...+......
T Consensus 140 -----------------~~~~~~~--------------------------------------~~~~----~~~~~~~~~~ 160 (401)
T cd03784 140 -----------------SAFPPPL--------------------------------------GRAN----LRLYALLEAE 160 (401)
T ss_pred -----------------ccCCCcc--------------------------------------chHH----HHHHHHHHHH
Confidence 0111100 0000 0000000000
Q ss_pred chhHHHHHHHHHHHHhh--c-------cccEEEEcCcccccccccccCCceeeec-ccccCCCCCCCCCCCccccchhhh
Q 010617 232 TSQKIFFDLLERNTRAM--I-------AVNFHFCNSTYELESEAFTTFPELLPIG-PLLASNRLGNTAGYFWCEDSNCLK 301 (506)
Q Consensus 232 ~~~~~~~~~~~~~~~~~--~-------~~~~~l~ns~~~le~~~~~~~p~v~~VG-pl~~~~~~~~~~~~~~~~~~~l~~ 301 (506)
...........+..+.+ . ..+..+....+.+.++..+++++..++| ++...... ...+.++..
T Consensus 161 ~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------~~~~~~~~~ 233 (401)
T cd03784 161 LWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPPPPDWPRFDLVTGYGFRDVPYN-------GPPPPELWL 233 (401)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCCCCCccccCcEeCCCCCCCCCC-------CCCCHHHHH
Confidence 00001111111111111 0 1223344444454444466677777775 33332221 234566778
Q ss_pred hhhcCCCCceEEEEeCccccC-CHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEeccchhhh
Q 010617 302 WLDQQQPSSVVYVSFGSFTIL-DQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRV 380 (506)
Q Consensus 302 ~l~~~~~~~vV~vs~GS~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~vpq~~l 380 (506)
|++. ++++|||++||.... ..+++..+++++...+.++||+++.... .. ...++|+++.+|+||.++
T Consensus 234 ~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~----~~------~~~~~~v~~~~~~p~~~l 301 (401)
T cd03784 234 FLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGL----GA------EDLPDNVRVVDFVPHDWL 301 (401)
T ss_pred HHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCccc----cc------cCCCCceEEeCCCCHHHH
Confidence 8876 367999999998654 4567888999999999999999876511 11 124688999999999999
Q ss_pred hcCCCcceEEeccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCChHH
Q 010617 381 LNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDF 460 (506)
Q Consensus 381 L~h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~~~ 460 (506)
|.|+++ ||||||+||++|||++|||+|++|+..||+.||+++++ +|+|+.+.. ..++.++|.++|.+++++ .+
T Consensus 302 l~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~-~G~g~~l~~---~~~~~~~l~~al~~~l~~-~~ 374 (401)
T cd03784 302 LPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAE-LGAGPALDP---RELTAERLAAALRRLLDP-PS 374 (401)
T ss_pred hhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHH-CCCCCCCCc---ccCCHHHHHHHHHHHhCH-HH
Confidence 988666 99999999999999999999999999999999999999 599999986 558999999999999985 46
Q ss_pred HHHHHHHHHHHHhhhhcCCChHHHHHHHHH
Q 010617 461 KARALELKEKAMSSVREGGSSYKTFQNFLQ 490 (506)
Q Consensus 461 r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~ 490 (506)
+++++++++++++ ++| ...+.++++
T Consensus 375 ~~~~~~~~~~~~~---~~g--~~~~~~~ie 399 (401)
T cd03784 375 RRRAAALLRRIRE---EDG--VPSAADVIE 399 (401)
T ss_pred HHHHHHHHHHHHh---ccC--HHHHHHHHh
Confidence 6677777777765 233 344444444
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=6.9e-39 Score=327.56 Aligned_cols=393 Identities=18% Similarity=0.164 Sum_probs=253.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCC---ccCHH
Q 010617 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWED---RNDLG 79 (506)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~ 79 (506)
+|||+|+..|..||++|+++||++|.++||+|+|++++.+.+.+++. ++.|..++........ ..+..
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a---------g~~f~~~~~~~~~~~~~~~~~~~~ 71 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA---------GLAFVAYPIRDSELATEDGKFAGV 71 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh---------CcceeeccccCChhhhhhhhhhcc
Confidence 58999999999999999999999999999999999999999999998 6777777654221211 11111
Q ss_pred HHHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHhhccccccCCCCCC
Q 010617 80 KLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDS 159 (506)
Q Consensus 80 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (506)
..+............++++-+.+ ..+|+++.|.....+ .++...++|++..............
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~e---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------------- 134 (406)
T COG1819 72 KSFRRLLQQFKKLIRELLELLRE---LEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAG------------- 134 (406)
T ss_pred chhHHHhhhhhhhhHHHHHHHHh---cchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccc-------------
Confidence 11111223333444555555554 789999999775555 8999999999986554333211100
Q ss_pred CCCCccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCCCCCcc-cccccccCCCchhHHHH
Q 010617 160 HGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSR-DCFWAHIGDWTSQKIFF 238 (506)
Q Consensus 160 ~~~~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~ 238 (506)
.|.++. .. +.+..... -.++..... .............+...
T Consensus 135 ----~~~~~~--~~-------------------------~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~r~~~ 177 (406)
T COG1819 135 ----LPLPPV--GI-------------------------AGKLPIPL------YPLPPRLVRPLIFARSWLPKLVVRRNL 177 (406)
T ss_pred ----cCcccc--cc-------------------------cccccccc------cccChhhccccccchhhhhhhhhhhhc
Confidence 000000 00 00000000 000000000 00000000000000000
Q ss_pred H--HHHH-HHHhh-ccccEEEEcCcccccccccccCCceeeecccccCCCCCCCCCCCccccchhhhhhhcCCCCceEEE
Q 010617 239 D--LLER-NTRAM-IAVNFHFCNSTYELESEAFTTFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYV 314 (506)
Q Consensus 239 ~--~~~~-~~~~~-~~~~~~l~ns~~~le~~~~~~~p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~v 314 (506)
. ...+ ..+.+ ......+.-....+.+. ...+....++||+....... +..| ...++++||+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~------------~~~~--~~~d~~~vyv 242 (406)
T COG1819 178 GLELGLPNIRRLFASGPLLEIAYTDVLFPPG-DRLPFIGPYIGPLLGEAANE------------LPYW--IPADRPIVYV 242 (406)
T ss_pred cccccccchHHHhcCCCCccccccccccCCC-CCCCCCcCcccccccccccc------------Ccch--hcCCCCeEEE
Confidence 0 0000 01111 11111111111111110 22233445566666554432 2233 2335779999
Q ss_pred EeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEeccchhhhhcCCCcceEEeccC
Q 010617 315 SFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLSHCG 394 (506)
Q Consensus 315 s~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~vpq~~lL~h~~v~~~ItHgG 394 (506)
|+||.... .++++.+++++..++.++|+...+. .. .... .++|+++.+|+||.++|.++++ ||||||
T Consensus 243 slGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~-~~-~~~~--------~p~n~~v~~~~p~~~~l~~ad~--vI~hGG 309 (406)
T COG1819 243 SLGTVGNA-VELLAIVLEALADLDVRVIVSLGGA-RD-TLVN--------VPDNVIVADYVPQLELLPRADA--VIHHGG 309 (406)
T ss_pred EcCCcccH-HHHHHHHHHHHhcCCcEEEEecccc-cc-cccc--------CCCceEEecCCCHHHHhhhcCE--EEecCC
Confidence 99998766 8999999999999999999999652 11 1122 3567889999999999977777 999999
Q ss_pred chhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 010617 395 WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSS 474 (506)
Q Consensus 395 ~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~~~r~~a~~l~~~~~~~ 474 (506)
+||++|||++|||+|++|...||+.||.|+++ +|+|..+.+ +.++.+.|+++|.++|.|+.|+++++++++.++..
T Consensus 310 ~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~-~G~G~~l~~---~~l~~~~l~~av~~vL~~~~~~~~~~~~~~~~~~~ 385 (406)
T COG1819 310 AGTTSEALYAGVPLVVIPDGADQPLNAERVEE-LGAGIALPF---EELTEERLRAAVNEVLADDSYRRAAERLAEEFKEE 385 (406)
T ss_pred cchHHHHHHcCCCEEEecCCcchhHHHHHHHH-cCCceecCc---ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999 699999987 67999999999999999999999999999999984
Q ss_pred hhcCCChHHHHHHHHHHHHhc
Q 010617 475 VREGGSSYKTFQNFLQWVKTN 495 (506)
Q Consensus 475 ~~~gg~~~~~~~~~~~~~~~~ 495 (506)
+| .+.+.+.++.+.+.
T Consensus 386 ---~g--~~~~a~~le~~~~~ 401 (406)
T COG1819 386 ---DG--PAKAADLLEEFARE 401 (406)
T ss_pred ---cc--HHHHHHHHHHHHhc
Confidence 55 66677777776554
No 28
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.92 E-value=4.2e-23 Score=206.57 Aligned_cols=305 Identities=17% Similarity=0.200 Sum_probs=195.3
Q ss_pred CEEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCC-CCccCHHHH
Q 010617 4 PRVLVMPAP-AQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPW-EDRNDLGKL 81 (506)
Q Consensus 4 ~~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~ 81 (506)
|||+|...+ +.||+..+++||++| |||+|+|++.....+.+.+ .+....+++-.... +..-+....
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 68 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP----------RFPVREIPGLGPIQENGRLDRWKT 68 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc----------ccCEEEccCceEeccCCccchHHH
Confidence 689976655 679999999999999 6999999999866655533 23444444221111 122222222
Q ss_pred HHHHH---HhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHhhccccccCCCCC
Q 010617 82 IEKCL---QVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIID 158 (506)
Q Consensus 82 ~~~~~---~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (506)
..... ......++++++.++. .+||+||+|. .+.+..+|+..|||++.+........
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~l~~---~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~---------------- 128 (318)
T PF13528_consen 69 VRNNIRWLARLARRIRREIRWLRE---FRPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLH---------------- 128 (318)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHh---cCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHccc----------------
Confidence 22211 1234445555555555 8999999995 45677899999999999876543210
Q ss_pred CCCCCccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCCCCCcccccccccCCCchhHHHH
Q 010617 159 SHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFF 238 (506)
Q Consensus 159 ~~~~~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 238 (506)
++.. +. ......
T Consensus 129 ------------------------------------------------------~~~~------~~--------~~~~~~ 140 (318)
T PF13528_consen 129 ------------------------------------------------------PNFW------LP--------WDQDFG 140 (318)
T ss_pred ------------------------------------------------------ccCC------cc--------hhhhHH
Confidence 0000 00 000011
Q ss_pred HHHHHHHH--hhccccEEEEcCcccccccccccCCceeeecccccCCCCCCCCCCCccccchhhhhhhcCCCCceEEEEe
Q 010617 239 DLLERNTR--AMIAVNFHFCNSTYELESEAFTTFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSF 316 (506)
Q Consensus 239 ~~~~~~~~--~~~~~~~~l~ns~~~le~~~~~~~p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~ 316 (506)
....+... ....++..+..+++ . + .....++.++||+..+.... .. ..+++.|+|++
T Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~~~-~--~-~~~~~~~~~~~p~~~~~~~~----------------~~-~~~~~~iLv~~ 199 (318)
T PF13528_consen 141 RLIERYIDRYHFPPADRRLALSFY-P--P-LPPFFRVPFVGPIIRPEIRE----------------LP-PEDEPKILVYF 199 (318)
T ss_pred HHHHHhhhhccCCcccceecCCcc-c--c-ccccccccccCchhcccccc----------------cC-CCCCCEEEEEe
Confidence 11111111 13445555555543 1 1 22234566788888765432 11 12356899999
Q ss_pred CccccCCHHHHHHHHHHHhhCC-CCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEecc--chhhhhcCCCcceEEecc
Q 010617 317 GSFTILDQVQFQELALGLELCK-RPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWA--PQLRVLNHPSIACFLSHC 393 (506)
Q Consensus 317 GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~v--pq~~lL~h~~v~~~ItHg 393 (506)
|..... .++++++..+ .++++. +.. . .+...+|+.+.+|. ...++|..+++ +||||
T Consensus 200 gg~~~~------~~~~~l~~~~~~~~~v~-g~~------~------~~~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~ 258 (318)
T PF13528_consen 200 GGGGPG------DLIEALKALPDYQFIVF-GPN------A------ADPRPGNIHVRPFSTPDFAELMAAADL--VISKG 258 (318)
T ss_pred CCCcHH------HHHHHHHhCCCCeEEEE-cCC------c------ccccCCCEEEeecChHHHHHHHHhCCE--EEECC
Confidence 975332 5567776666 566555 433 0 01115788888876 45579966666 99999
Q ss_pred CchhHHHHHHcCCcEEeccC--cccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHH
Q 010617 394 GWNSTMEGVSNGIPFLCWPY--FGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQV 454 (506)
Q Consensus 394 G~~sv~eal~~GvP~v~~P~--~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~v 454 (506)
|.||++|+++.|+|++++|. +.||..||+++++ +|+|..++. ++++++.|+++|+++
T Consensus 259 G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~-~G~~~~~~~---~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 259 GYTTISEALALGKPALVIPRPGQDEQEYNARKLEE-LGLGIVLSQ---EDLTPERLAEFLERL 317 (318)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHH-CCCeEEccc---ccCCHHHHHHHHhcC
Confidence 99999999999999999999 7899999999999 699999986 789999999999864
No 29
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.92 E-value=1e-22 Score=205.63 Aligned_cols=317 Identities=18% Similarity=0.187 Sum_probs=197.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHHH
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEK 84 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 84 (506)
+|+|...++.||++|.+++|++|.++||+|+|++.....+. +..+ ..++.++.++..--.. ...+ ..+..
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~--~l~~-----~~g~~~~~~~~~~l~~--~~~~-~~~~~ 72 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEK--TIIE-----KENIPYYSISSGKLRR--YFDL-KNIKD 72 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccc--ccCc-----ccCCcEEEEeccCcCC--CchH-HHHHH
Confidence 58888888889999999999999999999999987654321 1111 1267777776321111 1111 12222
Q ss_pred HHHhCcHH--HHHHHHHHhcCCCCCccEEEecCCcc--hHHHHHHHcCCceEEEccchHHHHHHHhhccccccCCCCCCC
Q 010617 85 CLQVMPGK--LEELIEEINSREDEKIDCFIADGNIG--WSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSH 160 (506)
Q Consensus 85 ~~~~~~~~--~~~ll~~l~~~~~~~~DlvV~D~~~~--~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (506)
........ ...++.+ .+||+||...... .+..+|..+++|++..-..
T Consensus 73 ~~~~~~~~~~~~~i~~~------~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n----------------------- 123 (352)
T PRK12446 73 PFLVMKGVMDAYVRIRK------LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESD----------------------- 123 (352)
T ss_pred HHHHHHHHHHHHHHHHh------cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCC-----------------------
Confidence 22222211 2233444 8999999976444 3788999999999883211
Q ss_pred CCCccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCCCCCcccccccccCCCchhHHHHHH
Q 010617 161 GMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDL 240 (506)
Q Consensus 161 ~~~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 240 (506)
.++++.. +.
T Consensus 124 --------------------------------------------------~~~g~~n-----------------r~---- 132 (352)
T PRK12446 124 --------------------------------------------------MTPGLAN-----------------KI---- 132 (352)
T ss_pred --------------------------------------------------CCccHHH-----------------HH----
Confidence 0111000 00
Q ss_pred HHHHHHhhccccEEEEcCcccccccccccC-CceeeecccccCCCCCCCCCCCccccchhhhhhhcCCCCceEEEEeCcc
Q 010617 241 LERNTRAMIAVNFHFCNSTYELESEAFTTF-PELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSF 319 (506)
Q Consensus 241 ~~~~~~~~~~~~~~l~ns~~~le~~~~~~~-p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~ 319 (506)
..+.++.+++ ++++-. .... .++..+|+...+.... ...+...+.+.-.+++++|+|..||.
T Consensus 133 ------~~~~a~~v~~-~f~~~~---~~~~~~k~~~tG~Pvr~~~~~-------~~~~~~~~~~~l~~~~~~iLv~GGS~ 195 (352)
T PRK12446 133 ------ALRFASKIFV-TFEEAA---KHLPKEKVIYTGSPVREEVLK-------GNREKGLAFLGFSRKKPVITIMGGSL 195 (352)
T ss_pred ------HHHhhCEEEE-Eccchh---hhCCCCCeEEECCcCCccccc-------ccchHHHHhcCCCCCCcEEEEECCcc
Confidence 1123333333 222211 1111 4678899877664421 01111112223234577999999998
Q ss_pred ccCCH-HHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEecc-c-hhhhhcCCCcceEEeccCch
Q 010617 320 TILDQ-VQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWA-P-QLRVLNHPSIACFLSHCGWN 396 (506)
Q Consensus 320 ~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~v-p-q~~lL~h~~v~~~ItHgG~~ 396 (506)
..... +.+..++..+.. +.+++|.++.+. +.... ++. .+..+.+|+ + -.++|+++++ +|||||.+
T Consensus 196 Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~-------~~~~~-~~~-~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~ 263 (352)
T PRK12446 196 GAKKINETVREALPELLL-KYQIVHLCGKGN-------LDDSL-QNK-EGYRQFEYVHGELPDILAITDF--VISRAGSN 263 (352)
T ss_pred chHHHHHHHHHHHHhhcc-CcEEEEEeCCch-------HHHHH-hhc-CCcEEecchhhhHHHHHHhCCE--EEECCChh
Confidence 65433 334445554432 478888887551 11111 111 344566887 4 4478988877 99999999
Q ss_pred hHHHHHHcCCcEEeccCc-----ccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCCh-HHHHHH
Q 010617 397 STMEGVSNGIPFLCWPYF-----GDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ-DFKARA 464 (506)
Q Consensus 397 sv~eal~~GvP~v~~P~~-----~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~-~~r~~a 464 (506)
|++|++++|+|+|++|+. .||..||.++++ .|+|..+.. ++++++.|.+++.+++.|+ .|++++
T Consensus 264 t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~-~g~~~~l~~---~~~~~~~l~~~l~~ll~~~~~~~~~~ 333 (352)
T PRK12446 264 AIFEFLTLQKPMLLIPLSKFASRGDQILNAESFER-QGYASVLYE---EDVTVNSLIKHVEELSHNNEKYKTAL 333 (352)
T ss_pred HHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHH-CCCEEEcch---hcCCHHHHHHHHHHHHcCHHHHHHHH
Confidence 999999999999999974 489999999999 499999975 6789999999999999886 455444
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.89 E-value=2.8e-21 Score=193.56 Aligned_cols=126 Identities=13% Similarity=0.178 Sum_probs=90.3
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhhCCC-CEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEeccc--hhhhhcCCC
Q 010617 309 SSVVYVSFGSFTILDQVQFQELALGLELCKR-PFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAP--QLRVLNHPS 385 (506)
Q Consensus 309 ~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~vp--q~~lL~h~~ 385 (506)
++.|++.+|+.. .+.+++++++.+. .+++ ...+ ...+ ..++|+.+.+|.| ..++|..++
T Consensus 188 ~~~iLv~~g~~~------~~~l~~~l~~~~~~~~i~-~~~~-------~~~~----~~~~~v~~~~~~~~~~~~~l~~ad 249 (321)
T TIGR00661 188 EDYILVYIGFEY------RYKILELLGKIANVKFVC-YSYE-------VAKN----SYNENVEIRRITTDNFKELIKNAE 249 (321)
T ss_pred CCcEEEECCcCC------HHHHHHHHHhCCCeEEEE-eCCC-------CCcc----ccCCCEEEEECChHHHHHHHHhCC
Confidence 457788788743 2345677766653 3332 2211 1111 2357888899997 346675555
Q ss_pred cceEEeccCchhHHHHHHcCCcEEeccCcc--cchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCChHHH
Q 010617 386 IACFLSHCGWNSTMEGVSNGIPFLCWPYFG--DQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFK 461 (506)
Q Consensus 386 v~~~ItHgG~~sv~eal~~GvP~v~~P~~~--DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~~~r 461 (506)
+ +|||||.+|++||+++|+|++++|... ||..||+.+++ .|+|+.++. .++ ++.+++.+++.|+.|+
T Consensus 250 ~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~-~g~~~~l~~---~~~---~~~~~~~~~~~~~~~~ 318 (321)
T TIGR00661 250 L--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLED-LGCGIALEY---KEL---RLLEAILDIRNMKRYK 318 (321)
T ss_pred E--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHH-CCCEEEcCh---hhH---HHHHHHHhcccccccc
Confidence 5 999999999999999999999999854 89999999999 599999975 333 6777887888777664
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.85 E-value=1.3e-18 Score=174.12 Aligned_cols=341 Identities=15% Similarity=0.151 Sum_probs=205.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCC-eEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCc-cCHHHH
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGF-RVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDR-NDLGKL 81 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh-~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~ 81 (506)
++|++...++.||+.|.++|+++|.++|+ +|.+..+....+..... ..++.++.++.+....... ..+...
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~-------~~~~~~~~I~~~~~~~~~~~~~~~~~ 73 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVK-------QYGIEFELIPSGGLRRKGSLKLLKAP 73 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeecc-------ccCceEEEEecccccccCcHHHHHHH
Confidence 35778888888999999999999999999 58887665443332211 1378888887544433111 112111
Q ss_pred HHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcc--hHHHHHHHcCCceEEEccchHHHHHHHhhccccccCCCCCC
Q 010617 82 IEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG--WSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDS 159 (506)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~--~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (506)
+..+. .....+.++.+ .+||+||.-.... .+..+|..+|||.+.. .++
T Consensus 74 ~~~~~--~~~~a~~il~~------~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ih------------------Eqn---- 123 (357)
T COG0707 74 FKLLK--GVLQARKILKK------LKPDVVIGTGGYVSGPVGIAAKLLGIPVIIH------------------EQN---- 123 (357)
T ss_pred HHHHH--HHHHHHHHHHH------cCCCEEEecCCccccHHHHHHHhCCCCEEEE------------------ecC----
Confidence 11111 11124555665 8999999965444 6888999999999993 221
Q ss_pred CCCCccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCCCCCcccccccccCCCchhHHHHH
Q 010617 160 HGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFD 239 (506)
Q Consensus 160 ~~~~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 239 (506)
.+++....
T Consensus 124 ---------------------------------------------------~~~G~ank--------------------- 131 (357)
T COG0707 124 ---------------------------------------------------AVPGLANK--------------------- 131 (357)
T ss_pred ---------------------------------------------------CCcchhHH---------------------
Confidence 11111110
Q ss_pred HHHHHHHhhccccEEEEcCcccccccccccCCceeeecccccCCCCCCCCCCCccccchhhhhhhcCCCCceEEEEeCcc
Q 010617 240 LLERNTRAMIAVNFHFCNSTYELESEAFTTFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSF 319 (506)
Q Consensus 240 ~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~ 319 (506)
+ ..+.++.+.+... ..+. ..-..++..+|--....-... +..- .-.+...++++|+|.-||.
T Consensus 132 ~------~~~~a~~V~~~f~-~~~~--~~~~~~~~~tG~Pvr~~~~~~--------~~~~-~~~~~~~~~~~ilV~GGS~ 193 (357)
T COG0707 132 I------LSKFAKKVASAFP-KLEA--GVKPENVVVTGIPVRPEFEEL--------PAAE-VRKDGRLDKKTILVTGGSQ 193 (357)
T ss_pred H------hHHhhceeeeccc-cccc--cCCCCceEEecCcccHHhhcc--------chhh-hhhhccCCCcEEEEECCcc
Confidence 0 0012333333222 1111 111125677774333222110 0000 1112222578999999987
Q ss_pred ccCC-HHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhc-CC-eEEEeccchh-hhhcCCCcceEEeccCc
Q 010617 320 TILD-QVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVA-AR-GQMISWAPQL-RVLNHPSIACFLSHCGW 395 (506)
Q Consensus 320 ~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~-~n-~~v~~~vpq~-~lL~h~~v~~~ItHgG~ 395 (506)
.... .+.+..++..+.+ +.+++...+.+ . .+....... .+ +.+.+|..+. ++++-+++ +||++|.
T Consensus 194 Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~-------~-~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa 262 (357)
T COG0707 194 GAKALNDLVPEALAKLAN-RIQVIHQTGKN-------D-LEELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGA 262 (357)
T ss_pred hhHHHHHHHHHHHHHhhh-CeEEEEEcCcc-------h-HHHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcc
Confidence 5432 2334444444433 46777777655 1 122222222 33 6677998766 68867666 9999999
Q ss_pred hhHHHHHHcCCcEEeccCc----ccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q 010617 396 NSTMEGVSNGIPFLCWPYF----GDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKA 471 (506)
Q Consensus 396 ~sv~eal~~GvP~v~~P~~----~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~~~r~~a~~l~~~~ 471 (506)
+|+.|+++.|+|++.+|.- .||..||..++++ |.|..++- .++|.++|.+.|.+++++ .++..+|++..
T Consensus 263 ~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~-gaa~~i~~---~~lt~~~l~~~i~~l~~~---~~~l~~m~~~a 335 (357)
T COG0707 263 LTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA-GAALVIRQ---SELTPEKLAELILRLLSN---PEKLKAMAENA 335 (357)
T ss_pred cHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC-CCEEEecc---ccCCHHHHHHHHHHHhcC---HHHHHHHHHHH
Confidence 9999999999999999973 3899999999996 99999985 679999999999999987 45566666666
Q ss_pred HhhhhcCCChHHHHHHHHHH
Q 010617 472 MSSVREGGSSYKTFQNFLQW 491 (506)
Q Consensus 472 ~~~~~~gg~~~~~~~~~~~~ 491 (506)
++. ...++.+.+.+.+..
T Consensus 336 ~~~--~~p~aa~~i~~~~~~ 353 (357)
T COG0707 336 KKL--GKPDAAERIADLLLA 353 (357)
T ss_pred Hhc--CCCCHHHHHHHHHHH
Confidence 653 112334444444443
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.82 E-value=5.7e-18 Score=172.31 Aligned_cols=325 Identities=15% Similarity=0.153 Sum_probs=190.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch--hHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHH
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH--KRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKL 81 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~--~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 81 (506)
|||+|...+..||....+.|+++|.++||+|++++.+... ..+++ .+++++.++..-... ......
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~---------~g~~~~~~~~~~~~~---~~~~~~ 69 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPK---------AGIEFHFIPSGGLRR---KGSLAN 69 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhcccc---------CCCcEEEEeccCcCC---CChHHH
Confidence 7899999888899999999999999999999999886532 11111 266666665321111 111111
Q ss_pred HHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCC--cchHHHHHHHcCCceEEEccchHHHHHHHhhccccccCCCCCC
Q 010617 82 IEKCLQVMPGKLEELIEEINSREDEKIDCFIADGN--IGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDS 159 (506)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~--~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (506)
+..... ....+..+.+.++. .+||+|++... ...+..+++..++|++.....
T Consensus 70 l~~~~~-~~~~~~~~~~~ik~---~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~---------------------- 123 (357)
T PRK00726 70 LKAPFK-LLKGVLQARKILKR---FKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQN---------------------- 123 (357)
T ss_pred HHHHHH-HHHHHHHHHHHHHh---cCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCC----------------------
Confidence 111111 11222333333333 79999999863 224566778889999862100
Q ss_pred CCCCccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCCCCCcccccccccCCCchhHHHHH
Q 010617 160 HGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFD 239 (506)
Q Consensus 160 ~~~~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 239 (506)
. .++ ...+
T Consensus 124 ------------------------------------------~---------~~~---------------------~~~r 131 (357)
T PRK00726 124 ------------------------------------------A---------VPG---------------------LANK 131 (357)
T ss_pred ------------------------------------------C---------Ccc---------------------HHHH
Confidence 0 000 0000
Q ss_pred HHHHHHHhhccccEEEEcCcccccccccccCCceeeecccccCCCCCCCCCCCccccchhhhhhhcCCCCceEEEEeCcc
Q 010617 240 LLERNTRAMIAVNFHFCNSTYELESEAFTTFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSF 319 (506)
Q Consensus 240 ~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~ 319 (506)
+. ...+|.+++.+...+.. ....++..+|......... +... ..-+.-..++.+|++..|+.
T Consensus 132 ~~------~~~~d~ii~~~~~~~~~---~~~~~i~vi~n~v~~~~~~-------~~~~--~~~~~~~~~~~~i~~~gg~~ 193 (357)
T PRK00726 132 LL------ARFAKKVATAFPGAFPE---FFKPKAVVTGNPVREEILA-------LAAP--PARLAGREGKPTLLVVGGSQ 193 (357)
T ss_pred HH------HHHhchheECchhhhhc---cCCCCEEEECCCCChHhhc-------ccch--hhhccCCCCCeEEEEECCcH
Confidence 00 11334444443322211 2235677777555432211 0000 00111122345666655543
Q ss_pred ccCCHHHHHHHHHHHhhCCC--CEEEEEcCCCCCCCCCCCChhhHHh--hcCCeEEEecc-chhhhhcCCCcceEEeccC
Q 010617 320 TILDQVQFQELALGLELCKR--PFLWVVRPDITTDANDRYPEGFQER--VAARGQMISWA-PQLRVLNHPSIACFLSHCG 394 (506)
Q Consensus 320 ~~~~~~~~~~~~~al~~~~~--~~i~~~~~~~~~~~~~~lp~~~~~~--~~~n~~v~~~v-pq~~lL~h~~v~~~ItHgG 394 (506)
. .......+.+++.+... .+++.++.. .. +.+.+. ..-++.+.+|+ +..+++..+++ +|+|+|
T Consensus 194 ~--~~~~~~~l~~a~~~~~~~~~~~~~~G~g----~~----~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g 261 (357)
T PRK00726 194 G--ARVLNEAVPEALALLPEALQVIHQTGKG----DL----EEVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAG 261 (357)
T ss_pred h--HHHHHHHHHHHHHHhhhCcEEEEEcCCC----cH----HHHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCC
Confidence 2 12222333366654443 334444433 11 222211 22236778998 45689977777 999999
Q ss_pred chhHHHHHHcCCcEEeccC----cccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCChHHHHHHHHHHHH
Q 010617 395 WNSTMEGVSNGIPFLCWPY----FGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEK 470 (506)
Q Consensus 395 ~~sv~eal~~GvP~v~~P~----~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~~~r~~a~~l~~~ 470 (506)
.++++||+++|+|+|++|. ..||..|+..+.+. |.|..+.. +++++++|+++|.++++|++.+++..+-+.+
T Consensus 262 ~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~-~~g~~~~~---~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~ 337 (357)
T PRK00726 262 ASTVAELAAAGLPAILVPLPHAADDHQTANARALVDA-GAALLIPQ---SDLTPEKLAEKLLELLSDPERLEAMAEAARA 337 (357)
T ss_pred HHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHC-CCEEEEEc---ccCCHHHHHHHHHHHHcCHHHHHHHHHHHHh
Confidence 9999999999999999997 36899999999995 99999976 5578999999999999998888766666555
Q ss_pred HH
Q 010617 471 AM 472 (506)
Q Consensus 471 ~~ 472 (506)
..
T Consensus 338 ~~ 339 (357)
T PRK00726 338 LG 339 (357)
T ss_pred cC
Confidence 43
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.78 E-value=8.1e-17 Score=163.19 Aligned_cols=321 Identities=15% Similarity=0.109 Sum_probs=188.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHHH
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEK 84 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 84 (506)
+|++...+..||....+.|++.|.++||+|++++....... ... ...++++..++..-... ......+..
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~ 70 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEA--RLV-----PKAGIPLHTIPVGGLRR---KGSLKKLKA 70 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh--hcc-----cccCCceEEEEecCcCC---CChHHHHHH
Confidence 58888888889999999999999999999999987543211 100 01256666665321111 111111111
Q ss_pred HHHh--CcHHHHHHHHHHhcCCCCCccEEEecCC--cchHHHHHHHcCCceEEEccchHHHHHHHhhccccccCCCCCCC
Q 010617 85 CLQV--MPGKLEELIEEINSREDEKIDCFIADGN--IGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSH 160 (506)
Q Consensus 85 ~~~~--~~~~~~~ll~~l~~~~~~~~DlvV~D~~--~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (506)
.... ....+..++++ .+||+|++... ...+..+|...|+|++.....
T Consensus 71 ~~~~~~~~~~~~~~i~~------~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~----------------------- 121 (350)
T cd03785 71 PFKLLKGVLQARKILKK------FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN----------------------- 121 (350)
T ss_pred HHHHHHHHHHHHHHHHh------cCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC-----------------------
Confidence 1111 11123444444 89999998753 235677788889998862100
Q ss_pred CCCccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCCCCCcccccccccCCCchhHHHHHH
Q 010617 161 GMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDL 240 (506)
Q Consensus 161 ~~~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 240 (506)
.+ ++ . ..++
T Consensus 122 ----------------------------------------~~----------~~--------~-------------~~~~ 130 (350)
T cd03785 122 ----------------------------------------AV----------PG--------L-------------ANRL 130 (350)
T ss_pred ----------------------------------------CC----------cc--------H-------------HHHH
Confidence 00 00 0 0000
Q ss_pred HHHHHHhhccccEEEEcCcccccccccccCCceeeecccccCCCCCCCCCCCccccchhhhhhhcCCCCceEEEEeCccc
Q 010617 241 LERNTRAMIAVNFHFCNSTYELESEAFTTFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFT 320 (506)
Q Consensus 241 ~~~~~~~~~~~~~~l~ns~~~le~~~~~~~p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~ 320 (506)
....++.+++.+....+. -...++..+|......... .... ...+....++.+|++..|+..
T Consensus 131 ------~~~~~~~vi~~s~~~~~~---~~~~~~~~i~n~v~~~~~~--------~~~~-~~~~~~~~~~~~i~~~~g~~~ 192 (350)
T cd03785 131 ------LARFADRVALSFPETAKY---FPKDKAVVTGNPVREEILA--------LDRE-RARLGLRPGKPTLLVFGGSQG 192 (350)
T ss_pred ------HHHhhCEEEEcchhhhhc---CCCCcEEEECCCCchHHhh--------hhhh-HHhcCCCCCCeEEEEECCcHh
Confidence 112466677766544432 1124667777554332211 0000 122222233456666666543
Q ss_pred cCC-HHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhh---cCCeEEEecc-chhhhhcCCCcceEEeccCc
Q 010617 321 ILD-QVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERV---AARGQMISWA-PQLRVLNHPSIACFLSHCGW 395 (506)
Q Consensus 321 ~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~---~~n~~v~~~v-pq~~lL~h~~v~~~ItHgG~ 395 (506)
... .+.+..++..+.+.+..+++.++.. . .+.+.+.. .+|+.+.+|+ +..++|+.+++ +|+++|.
T Consensus 193 ~~~~~~~l~~a~~~l~~~~~~~~~i~G~g----~----~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~ 262 (350)
T cd03785 193 ARAINEAVPEALAELLRKRLQVIHQTGKG----D----LEEVKKAYEELGVNYEVFPFIDDMAAAYAAADL--VISRAGA 262 (350)
T ss_pred HHHHHHHHHHHHHHhhccCeEEEEEcCCc----c----HHHHHHHHhccCCCeEEeehhhhHHHHHHhcCE--EEECCCH
Confidence 211 1222233334433334445555432 1 12222222 3688899998 55578977776 9999999
Q ss_pred hhHHHHHHcCCcEEeccC----cccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCChHHHHHHHHH
Q 010617 396 NSTMEGVSNGIPFLCWPY----FGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALEL 467 (506)
Q Consensus 396 ~sv~eal~~GvP~v~~P~----~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~~~r~~a~~l 467 (506)
+++.||+++|+|+|++|. ..+|..|+..+.+. |.|..++. .+.+.++|.++|.+++.|+..+++..+-
T Consensus 263 ~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~-g~g~~v~~---~~~~~~~l~~~i~~ll~~~~~~~~~~~~ 334 (350)
T cd03785 263 STVAELAALGLPAILIPLPYAADDHQTANARALVKA-GAAVLIPQ---EELTPERLAAALLELLSDPERLKAMAEA 334 (350)
T ss_pred hHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhC-CCEEEEec---CCCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999999999986 35788999999984 99999975 4468999999999999887665544443
No 34
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.68 E-value=3e-15 Score=153.33 Aligned_cols=351 Identities=12% Similarity=-0.007 Sum_probs=197.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHH
Q 010617 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLI 82 (506)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 82 (506)
-+||+|...++.||++|. +|+++|.++|++|.|+..... .+++.+.. ..+.+..++- . .+.+.+
T Consensus 5 ~~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~~-----~~~~~~~l~v----~----G~~~~l 68 (385)
T TIGR00215 5 IPTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGCE-----VLYSMEELSV----M----GLREVL 68 (385)
T ss_pred CCeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcCc-----cccChHHhhh----c----cHHHHH
Confidence 368999999999999999 999999999999999986432 34444211 1233333321 0 011111
Q ss_pred HHHHHhCcHHHHHHHHHHhcCCCCCccEEEe-cCCcch--HHHHHHHcCCceEEEccchHHHHHHHhhccccccCCCCCC
Q 010617 83 EKCLQVMPGKLEELIEEINSREDEKIDCFIA-DGNIGW--SMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDS 159 (506)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~-D~~~~~--~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (506)
..+. .....+.+..+.+++ .+||+||. |...+. ....|+.+|||++.+.+.-. +.
T Consensus 69 ~~~~-~~~~~~~~~~~~l~~---~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~--wa---------------- 126 (385)
T TIGR00215 69 GRLG-RLLKIRKEVVQLAKQ---AKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQV--WA---------------- 126 (385)
T ss_pred HHHH-HHHHHHHHHHHHHHh---cCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcH--hh----------------
Confidence 1111 111222333333443 89999996 532223 33488899999987431100 00
Q ss_pred CCCCccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCCCCCcccccccccCCCchhHHHHH
Q 010617 160 HGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFD 239 (506)
Q Consensus 160 ~~~~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 239 (506)
+. ..+.+.+.
T Consensus 127 ------------------------------------------w~---------------------------~~~~r~l~- 136 (385)
T TIGR00215 127 ------------------------------------------WR---------------------------KWRAKKIE- 136 (385)
T ss_pred ------------------------------------------cC---------------------------cchHHHHH-
Confidence 00 00011111
Q ss_pred HHHHHHHhhccccEEEEcCcccccccccccCCceeeecccccCCCCCCCCCCCccccchhhhhhhcCCCCceEEEEeCcc
Q 010617 240 LLERNTRAMIAVNFHFCNSTYELESEAFTTFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSF 319 (506)
Q Consensus 240 ~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~ 319 (506)
+.+|.+++.+..+-+.- ....-+..+||.-..+..... .+...+..+-+.-.+++++|.+-.||.
T Consensus 137 ---------~~~d~v~~~~~~e~~~~-~~~g~~~~~vGnPv~~~~~~~-----~~~~~~~r~~lgl~~~~~~Ilvl~GSR 201 (385)
T TIGR00215 137 ---------KATDFLLAILPFEKAFY-QKKNVPCRFVGHPLLDAIPLY-----KPDRKSAREKLGIDHNGETLALLPGSR 201 (385)
T ss_pred ---------HHHhHhhccCCCcHHHH-HhcCCCEEEECCchhhhcccc-----CCCHHHHHHHcCCCCCCCEEEEECCCC
Confidence 24555555554443321 121124556884443221100 011111222222233466888877775
Q ss_pred ccCCHHHHHHHHHHHhhC-----CCCEEEEEcCCCCCCCCCCCChhhHHhh--cCCeEEEeccchhhhhcCCCcceEEec
Q 010617 320 TILDQVQFQELALGLELC-----KRPFLWVVRPDITTDANDRYPEGFQERV--AARGQMISWAPQLRVLNHPSIACFLSH 392 (506)
Q Consensus 320 ~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~lp~~~~~~~--~~n~~v~~~vpq~~lL~h~~v~~~ItH 392 (506)
..--......+++++... +.++++....... ...-+.+.+.. ...+.+..+ ...++++.+++ +|+-
T Consensus 202 ~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~ 274 (385)
T TIGR00215 202 GSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKR----RLQFEQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLA 274 (385)
T ss_pred HHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchh----HHHHHHHHHHhCCCCcEEEECc-hHHHHHHhCCE--Eeec
Confidence 332123445555554332 3345554433210 00001111122 123333322 34468877777 9999
Q ss_pred cCchhHHHHHHcCCcEEec----cCcc---------cchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCCh-
Q 010617 393 CGWNSTMEGVSNGIPFLCW----PYFG---------DQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ- 458 (506)
Q Consensus 393 gG~~sv~eal~~GvP~v~~----P~~~---------DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~- 458 (506)
+|..|+ |++++|+|+|++ |+.. .|..|+..+..+ ++...+.- +..|++.|.+.+.+++.|+
T Consensus 275 SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~-~~~pel~q---~~~~~~~l~~~~~~ll~~~~ 349 (385)
T TIGR00215 275 SGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANR-LLVPELLQ---EECTPHPLAIALLLLLENGL 349 (385)
T ss_pred CCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCC-ccchhhcC---CCCCHHHHHHHHHHHhcCCc
Confidence 999988 999999999999 8642 388899999886 88888764 6789999999999999999
Q ss_pred ---HHHHHHHHHHHHHHhhhhcCCChHHHHHHH
Q 010617 459 ---DFKARALELKEKAMSSVREGGSSYKTFQNF 488 (506)
Q Consensus 459 ---~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~ 488 (506)
+++++.++--+++++.+.++|.+.+..+..
T Consensus 350 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i 382 (385)
T TIGR00215 350 KAYKEMHRERQFFEELRQRIYCNADSERAAQAV 382 (385)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 888877777777777666667665554433
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.67 E-value=2e-14 Score=145.52 Aligned_cols=87 Identities=18% Similarity=0.284 Sum_probs=71.4
Q ss_pred chhhhhcCCCcceEEeccCchhHHHHHHcCCcEEeccCc---ccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHH
Q 010617 376 PQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYF---GDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVD 452 (506)
Q Consensus 376 pq~~lL~h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~---~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~ 452 (506)
+..++|+.+++ +|+++|.+++.||+++|+|+|+.|.. .+|..|+..+++ .|.|..++. ++.++++|.+++.
T Consensus 243 ~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~-~~~G~~~~~---~~~~~~~l~~~i~ 316 (348)
T TIGR01133 243 NMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLED-LGAGLVIRQ---KELLPEKLLEALL 316 (348)
T ss_pred CHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHH-CCCEEEEec---ccCCHHHHHHHHH
Confidence 45678877777 99999988999999999999999863 478889999988 499998875 5568999999999
Q ss_pred HHhCChHHHHHHHHHH
Q 010617 453 QVLGNQDFKARALELK 468 (506)
Q Consensus 453 ~vl~d~~~r~~a~~l~ 468 (506)
++++|++.+++..+-+
T Consensus 317 ~ll~~~~~~~~~~~~~ 332 (348)
T TIGR01133 317 KLLLDPANLEAMAEAA 332 (348)
T ss_pred HHHcCHHHHHHHHHHH
Confidence 9999987665444433
No 36
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.67 E-value=2.1e-14 Score=147.38 Aligned_cols=141 Identities=14% Similarity=0.221 Sum_probs=99.9
Q ss_pred CCceEEEEeCccccCCHHHHHHHHHHHhhC-CCCEEEEEcCCCCCCCCCCCChhhHH---hhcCCeEEEeccchh-hhhc
Q 010617 308 PSSVVYVSFGSFTILDQVQFQELALGLELC-KRPFLWVVRPDITTDANDRYPEGFQE---RVAARGQMISWAPQL-RVLN 382 (506)
Q Consensus 308 ~~~vV~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~lp~~~~~---~~~~n~~v~~~vpq~-~lL~ 382 (506)
++++|++..|+.... ..+..+++++... +.++++..+.+ ..+.+.+.+ ..++|+.+.+|+++. ++++
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~------~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~ 272 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKN------EALKQSLEDLQETNPDALKVFGYVENIDELFR 272 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCC------HHHHHHHHHHHhcCCCcEEEEechhhHHHHHH
Confidence 456787777776432 2345566676543 45666665533 111122222 223588899999874 7998
Q ss_pred CCCcceEEeccCchhHHHHHHcCCcEEec-cCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCChHHH
Q 010617 383 HPSIACFLSHCGWNSTMEGVSNGIPFLCW-PYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFK 461 (506)
Q Consensus 383 h~~v~~~ItHgG~~sv~eal~~GvP~v~~-P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~~~r 461 (506)
.+++ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+++. |.|+... +.++|.++|.++++|++.+
T Consensus 273 ~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~~-------~~~~l~~~i~~ll~~~~~~ 342 (380)
T PRK13609 273 VTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVIR-------DDEEVFAKTEALLQDDMKL 342 (380)
T ss_pred hccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEEC-------CHHHHHHHHHHHHCCHHHH
Confidence 8887 99999988999999999999984 6777788999988884 8887642 5799999999999998766
Q ss_pred HHHHH
Q 010617 462 ARALE 466 (506)
Q Consensus 462 ~~a~~ 466 (506)
++..+
T Consensus 343 ~~m~~ 347 (380)
T PRK13609 343 LQMKE 347 (380)
T ss_pred HHHHH
Confidence 55443
No 37
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.64 E-value=2.4e-14 Score=140.17 Aligned_cols=104 Identities=15% Similarity=0.131 Sum_probs=76.8
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhhC--CCCEEEEEcCCCCCCCCCCCChhhHHh--hcCCeEEEeccchh-hhhcC
Q 010617 309 SSVVYVSFGSFTILDQVQFQELALGLELC--KRPFLWVVRPDITTDANDRYPEGFQER--VAARGQMISWAPQL-RVLNH 383 (506)
Q Consensus 309 ~~vV~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~lp~~~~~~--~~~n~~v~~~vpq~-~lL~h 383 (506)
.+.|++++|.... ......+++++... +.++.++++.. .+..+.+.+. ...|+.+..++++. ++|..
T Consensus 170 ~~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~G~~------~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~ 241 (279)
T TIGR03590 170 LRRVLVSFGGADP--DNLTLKLLSALAESQINISITLVTGSS------NPNLDELKKFAKEYPNIILFIDVENMAELMNE 241 (279)
T ss_pred cCeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEECCC------CcCHHHHHHHHHhCCCEEEEeCHHHHHHHHHH
Confidence 3579999995432 23455666777553 45677777654 2223333322 23688889999986 79977
Q ss_pred CCcceEEeccCchhHHHHHHcCCcEEeccCcccchhhHHh
Q 010617 384 PSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERY 423 (506)
Q Consensus 384 ~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~r 423 (506)
+++ +||+|| +|++|+++.|+|++++|...+|..||+.
T Consensus 242 aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 242 ADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred CCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 777 999999 9999999999999999999999999975
No 38
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.63 E-value=1e-13 Score=132.74 Aligned_cols=331 Identities=15% Similarity=0.170 Sum_probs=201.9
Q ss_pred CCEEEEEcCC--CccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCC---c
Q 010617 3 RPRVLVMPAP--AQGHVIPLLEFSQCLAKH--GFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWED---R 75 (506)
Q Consensus 3 ~~~il~~~~~--~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~ 75 (506)
.+||+|.+.- +-||+..+..+|++|.+. |.+|++++.......+.- ..++.|+.+|.-....+. .
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~--------~~gVd~V~LPsl~k~~~G~~~~ 80 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG--------PAGVDFVKLPSLIKGDNGEYGL 80 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC--------cccCceEecCceEecCCCceee
Confidence 3499999955 559999999999999997 999999999766655533 258999999853322211 1
Q ss_pred cCHHHHHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHhhccccccCC
Q 010617 76 NDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDG 155 (506)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~ 155 (506)
.+...-.+.+.+.-...+.+.++. .+||++|+|.+ +.++ .-+. .|..- + ++..
T Consensus 81 ~d~~~~l~e~~~~Rs~lil~t~~~------fkPDi~IVd~~-P~Gl-r~EL--~ptL~-------------y----l~~~ 133 (400)
T COG4671 81 VDLDGDLEETKKLRSQLILSTAET------FKPDIFIVDKF-PFGL-RFEL--LPTLE-------------Y----LKTT 133 (400)
T ss_pred eecCCCHHHHHHHHHHHHHHHHHh------cCCCEEEEecc-ccch-hhhh--hHHHH-------------H----Hhhc
Confidence 111001333334344445555555 89999999975 4331 1110 01000 0 0000
Q ss_pred CCCCCCCCccccCCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCCCCCcccccccccCCCchhH
Q 010617 156 IIDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQK 235 (506)
Q Consensus 156 ~~~~~~~~~p~~~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 235 (506)
| +. .+-++.. ..|.+......+....
T Consensus 134 ---------------------------------------------~-t~------~vL~lr~--i~D~p~~~~~~w~~~~ 159 (400)
T COG4671 134 ---------------------------------------------G-TR------LVLGLRS--IRDIPQELEADWRRAE 159 (400)
T ss_pred ---------------------------------------------C-Cc------ceeehHh--hhhchhhhccchhhhH
Confidence 0 00 0000000 1111101111111111
Q ss_pred HHHHHHHHHHHhh-ccccEEEEcCccccccccccc------CCceeeecccccCCCCCCCCCCCccccchhhhhhhcCCC
Q 010617 236 IFFDLLERNTRAM-IAVNFHFCNSTYELESEAFTT------FPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQP 308 (506)
Q Consensus 236 ~~~~~~~~~~~~~-~~~~~~l~ns~~~le~~~~~~------~p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 308 (506)
.+ +.+ +..|.+++-..|.|--+...+ -..+.|+|-+...-... + .+. .. .++
T Consensus 160 ~~--------~~I~r~yD~V~v~GdP~f~d~~~~~~~~~~i~~k~~ytG~vq~~~~~~-~----~p~-------~~-~pE 218 (400)
T COG4671 160 TV--------RLINRFYDLVLVYGDPDFYDPLTEFPFAPAIRAKMRYTGFVQRSLPHL-P----LPP-------HE-APE 218 (400)
T ss_pred HH--------HHHHHhheEEEEecCccccChhhcCCccHhhhhheeEeEEeeccCcCC-C----CCC-------cC-CCc
Confidence 11 111 357888998888875442222 34889999883221111 0 111 11 133
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhh-CCCC--EEEEEcCCCCCCCCCCCChhhHHh----hc--CCeEEEeccchh-
Q 010617 309 SSVVYVSFGSFTILDQVQFQELALGLEL-CKRP--FLWVVRPDITTDANDRYPEGFQER----VA--ARGQMISWAPQL- 378 (506)
Q Consensus 309 ~~vV~vs~GS~~~~~~~~~~~~~~al~~-~~~~--~i~~~~~~~~~~~~~~lp~~~~~~----~~--~n~~v~~~vpq~- 378 (506)
+--|+||.|- .....+++...++|-.. .+.+ .++++++. .|...+++ .+ +++.+..|-.+.
T Consensus 219 ~~~Ilvs~GG-G~dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~--------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~ 289 (400)
T COG4671 219 GFDILVSVGG-GADGAELIETALAAAQLLAGLNHKWLIVTGPF--------MPEAQRQKLLASAPKRPHISIFEFRNDFE 289 (400)
T ss_pred cceEEEecCC-ChhhHHHHHHHHHHhhhCCCCCcceEEEeCCC--------CCHHHHHHHHHhcccCCCeEEEEhhhhHH
Confidence 4578888886 44567888887777654 3333 44455433 34443332 23 778888997766
Q ss_pred hhhcCCCcceEEeccCchhHHHHHHcCCcEEeccCc---ccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHh
Q 010617 379 RVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYF---GDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVL 455 (506)
Q Consensus 379 ~lL~h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~---~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl 455 (506)
.+|.-++. +|+-||.||++|-|.+|+|.+++|.. .||..-|.|+++ ||+--.|.+ ++++++.|+++|...+
T Consensus 290 ~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~-LGL~dvL~p---e~lt~~~La~al~~~l 363 (400)
T COG4671 290 SLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEE-LGLVDVLLP---ENLTPQNLADALKAAL 363 (400)
T ss_pred HHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHh-cCcceeeCc---ccCChHHHHHHHHhcc
Confidence 57756555 99999999999999999999999986 499999999999 899999987 7899999999999999
Q ss_pred CCh
Q 010617 456 GNQ 458 (506)
Q Consensus 456 ~d~ 458 (506)
.-+
T Consensus 364 ~~P 366 (400)
T COG4671 364 ARP 366 (400)
T ss_pred cCC
Confidence 734
No 39
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.50 E-value=1.7e-12 Score=133.61 Aligned_cols=163 Identities=12% Similarity=0.236 Sum_probs=107.4
Q ss_pred CCceEEEEeCccccCCHHHHHHHHHHH-hh-CCCCEEEEEcCCCCCCCCCCCChhhHHhh--cCCeEEEeccchh-hhhc
Q 010617 308 PSSVVYVSFGSFTILDQVQFQELALGL-EL-CKRPFLWVVRPDITTDANDRYPEGFQERV--AARGQMISWAPQL-RVLN 382 (506)
Q Consensus 308 ~~~vV~vs~GS~~~~~~~~~~~~~~al-~~-~~~~~i~~~~~~~~~~~~~~lp~~~~~~~--~~n~~v~~~vpq~-~lL~ 382 (506)
++++|++..|+... ...+..+++++ +. .+.+++++.+.+ ..+.+.+.+.. .+|+.+.+|+++. ++++
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~------~~l~~~l~~~~~~~~~v~~~G~~~~~~~~~~ 272 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKS------KELKRSLTAKFKSNENVLILGYTKHMNEWMA 272 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCC------HHHHHHHHHHhccCCCeEEEeccchHHHHHH
Confidence 46688888887642 23344455553 22 345666665433 11112222222 3578888999654 6887
Q ss_pred CCCcceEEeccCchhHHHHHHcCCcEEec-cCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCChHHH
Q 010617 383 HPSIACFLSHCGWNSTMEGVSNGIPFLCW-PYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFK 461 (506)
Q Consensus 383 h~~v~~~ItHgG~~sv~eal~~GvP~v~~-P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~~~r 461 (506)
.+++ +|+..|..|+.||+++|+|+|+. |..++|..|+..+++. |+|.... +.+++.++|.++++|++.+
T Consensus 273 ~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~-------~~~~l~~~i~~ll~~~~~~ 342 (391)
T PRK13608 273 SSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIAD-------TPEEAIKIVASLTNGNEQL 342 (391)
T ss_pred hhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeC-------CHHHHHHHHHHHhcCHHHH
Confidence 7777 99988888999999999999998 7767788999999995 9998763 6899999999999887544
Q ss_pred HHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 010617 462 ARALELKEKAMSSVREGGSSYKTFQNFLQWV 492 (506)
Q Consensus 462 ~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~ 492 (506)
+ +|++.+++. .+..+..+.++.+++.+
T Consensus 343 ~---~m~~~~~~~-~~~~s~~~i~~~l~~l~ 369 (391)
T PRK13608 343 T---NMISTMEQD-KIKYATQTICRDLLDLI 369 (391)
T ss_pred H---HHHHHHHHh-cCCCCHHHHHHHHHHHh
Confidence 3 444444442 12333344444444433
No 40
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.50 E-value=5e-12 Score=129.76 Aligned_cols=106 Identities=11% Similarity=0.052 Sum_probs=66.9
Q ss_pred hhhhhcCCCcceEEeccCchhHHHHHHcCCcEEeccCcc--------cchhh-----HHhhhccceeeeEeecCCCCCcC
Q 010617 377 QLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFG--------DQFLN-----ERYICDFWKVGLKFDRDEGGIIT 443 (506)
Q Consensus 377 q~~lL~h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~--------DQ~~n-----a~rv~~~lG~G~~l~~~~~~~~~ 443 (506)
-.++++.+++ +|+-+|.+++ ||+++|+|+|+.|... .|..| +..+.+. +++..+.. ...+
T Consensus 255 ~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~---~~~~ 327 (380)
T PRK00025 255 KREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGR-ELVPELLQ---EEAT 327 (380)
T ss_pred HHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCC-CcchhhcC---CCCC
Confidence 3467877777 9999999888 9999999999985431 22222 2233332 33333332 4578
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHH
Q 010617 444 REEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQ 490 (506)
Q Consensus 444 ~~~l~~ai~~vl~d~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~ 490 (506)
+++|.+++.++++|++.+++..+-.+.+++.. ..|.+.+.++.+.+
T Consensus 328 ~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~ 373 (380)
T PRK00025 328 PEKLARALLPLLADGARRQALLEGFTELHQQL-RCGADERAAQAVLE 373 (380)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 99999999999999977765555544444433 23443444333333
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.43 E-value=8.2e-15 Score=132.43 Aligned_cols=140 Identities=14% Similarity=0.183 Sum_probs=96.7
Q ss_pred eEEEEeCccccCC-HHHHHHHHHHHhh--CCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEeccc-hhhhhcCCCc
Q 010617 311 VVYVSFGSFTILD-QVQFQELALGLEL--CKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAP-QLRVLNHPSI 386 (506)
Q Consensus 311 vV~vs~GS~~~~~-~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~vp-q~~lL~h~~v 386 (506)
+|+|+.||..... .+.+..+...+.. ...++++.++... ..+.... .+....|+.+.+|++ ..++++.+++
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~----~~~~~~~-~~~~~~~v~~~~~~~~m~~~m~~aDl 75 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNN----YEELKIK-VENFNPNVKVFGFVDNMAELMAAADL 75 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCE----CHHHCCC-HCCTTCCCEEECSSSSHHHHHHHHSE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCc----HHHHHHH-HhccCCcEEEEechhhHHHHHHHcCE
Confidence 4899999764321 1112223333322 2578888887651 1111111 111226788999999 7789988877
Q ss_pred ceEEeccCchhHHHHHHcCCcEEeccCcc----cchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCChHHH
Q 010617 387 ACFLSHCGWNSTMEGVSNGIPFLCWPYFG----DQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFK 461 (506)
Q Consensus 387 ~~~ItHgG~~sv~eal~~GvP~v~~P~~~----DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~~~r 461 (506)
+|||||.||++|++++|+|+|++|... +|..||..+++. |.|..+.. ...+.+.|.++|.+++.++..+
T Consensus 76 --vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~---~~~~~~~L~~~i~~l~~~~~~~ 148 (167)
T PF04101_consen 76 --VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDE---SELNPEELAEAIEELLSDPEKL 148 (167)
T ss_dssp --EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSEC---CC-SCCCHHHHHHCHCCCHH-S
T ss_pred --EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCc---ccCCHHHHHHHHHHHHcCcHHH
Confidence 999999999999999999999999988 999999999995 99999986 5677999999999999988653
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.41 E-value=2.4e-10 Score=117.42 Aligned_cols=94 Identities=18% Similarity=0.246 Sum_probs=74.1
Q ss_pred CCeEEEeccchh-hhhcCCCcceEEeccCchhHHHHHHcCCcEEeccCcccch-hhHHhhhccceeeeEeecCCCCCcCH
Q 010617 367 ARGQMISWAPQL-RVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQF-LNERYICDFWKVGLKFDRDEGGIITR 444 (506)
Q Consensus 367 ~n~~v~~~vpq~-~lL~h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~-~na~rv~~~lG~G~~l~~~~~~~~~~ 444 (506)
.++.+.+|+++. ++++.+++ +|+.+|-+|+.||+++|+|+|+.+....|. .|+..+.+. |.|..+ -++
T Consensus 265 ~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~-------~~~ 334 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS-------ESP 334 (382)
T ss_pred CCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec-------CCH
Confidence 467788999855 68877777 999999999999999999999988665564 799889884 999765 278
Q ss_pred HHHHHHHHHHhCC-hHHHHHHHHHHHHHHh
Q 010617 445 EEIKNKVDQVLGN-QDFKARALELKEKAMS 473 (506)
Q Consensus 445 ~~l~~ai~~vl~d-~~~r~~a~~l~~~~~~ 473 (506)
++|.++|.+++.| ++.+++ |++..++
T Consensus 335 ~~la~~i~~ll~~~~~~~~~---m~~~~~~ 361 (382)
T PLN02605 335 KEIARIVAEWFGDKSDELEA---MSENALK 361 (382)
T ss_pred HHHHHHHHHHHcCCHHHHHH---HHHHHHH
Confidence 9999999999987 554443 4444443
No 43
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.37 E-value=1.6e-09 Score=109.23 Aligned_cols=195 Identities=11% Similarity=0.077 Sum_probs=110.8
Q ss_pred ccccEEEEcCcccccccccccCCceeeecccccCCCCCCCCCCCccccchhhhhhhcCCCCceEEEEeCcccc-CCHHHH
Q 010617 249 IAVNFHFCNSTYELESEAFTTFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTI-LDQVQF 327 (506)
Q Consensus 249 ~~~~~~l~ns~~~le~~~~~~~p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~-~~~~~~ 327 (506)
..++.+++.+....+.......+++..+.......... + .........-+. .++..+++..|+... ...+.+
T Consensus 143 ~~~d~i~~~s~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~----~~~~~~~~~~~~--~~~~~~i~~~G~~~~~k~~~~~ 215 (364)
T cd03814 143 NRADRVLVPSPSLADELRARGFRRVRLWPRGVDTELFH-P----RRRDEALRARLG--PPDRPVLLYVGRLAPEKNLEAL 215 (364)
T ss_pred HhCCEEEeCCHHHHHHHhccCCCceeecCCCccccccC-c----ccccHHHHHHhC--CCCCeEEEEEeccccccCHHHH
Confidence 57888888888776532122233444443332221110 0 001111111111 223466777776532 223444
Q ss_pred HHHHHHHhh-CCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEeccchhh---hhcCCCcceEEeccC----chhHH
Q 010617 328 QELALGLEL-CKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLR---VLNHPSIACFLSHCG----WNSTM 399 (506)
Q Consensus 328 ~~~~~al~~-~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~vpq~~---lL~h~~v~~~ItHgG----~~sv~ 399 (506)
-.++..+.. .+.++++.-.+. . .+.+. ...+|+.+.+|+++.+ +++.+++ +|..+. .+++.
T Consensus 216 i~~~~~l~~~~~~~l~i~G~~~----~----~~~~~-~~~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~l 284 (364)
T cd03814 216 LDADLPLRRRPPVRLVIVGDGP----A----RARLE-ARYPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVL 284 (364)
T ss_pred HHHHHHhhhcCCceEEEEeCCc----h----HHHHh-ccCCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHH
Confidence 444444432 234555444322 1 11111 2357888999999775 6777776 886654 37899
Q ss_pred HHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q 010617 400 EGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKA 471 (506)
Q Consensus 400 eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~~~r~~a~~l~~~~ 471 (506)
||+++|+|+|+.+..+ +...+++. +.|...+. -+.+++.++|.+++.|++.+++..+-+.+.
T Consensus 285 Ea~a~g~PvI~~~~~~----~~~~i~~~-~~g~~~~~-----~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 346 (364)
T cd03814 285 EAMASGLPVVAPDAGG----PADIVTDG-ENGLLVEP-----GDAEAFAAALAALLADPELRRRMAARARAE 346 (364)
T ss_pred HHHHcCCCEEEcCCCC----chhhhcCC-cceEEcCC-----CCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 9999999999887554 55566663 88888754 468889999999999987665544444433
No 44
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.29 E-value=1.2e-11 Score=107.97 Aligned_cols=125 Identities=15% Similarity=0.186 Sum_probs=81.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHHHH
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKC 85 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (506)
|+|++.|+.||++|+++||++|.+|||+|++++++.+.+.+++. |+.|..++.... ..........+...
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~---------Gl~~~~~~~~~~-~~~~~~~~~~~~~~ 70 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA---------GLEFVPIPGDSR-LPRSLEPLANLRRL 70 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT---------T-EEEESSSCGG-GGHHHHHHHHHHCH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc---------CceEEEecCCcC-cCcccchhhhhhhH
Confidence 78999999999999999999999999999999999999999776 899999886500 00000011111111
Q ss_pred HHh--CcHHHHHHHHHHh-c-----CCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHH
Q 010617 86 LQV--MPGKLEELIEEIN-S-----REDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAA 140 (506)
Q Consensus 86 ~~~--~~~~~~~ll~~l~-~-----~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~~~~ 140 (506)
.+. ....+.+.+.... + .+....|+++.+.....+..+|+++|||++.....+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 71 ARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred HHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 111 0111112222111 1 12246788888987778999999999999997766554
No 45
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.28 E-value=8e-10 Score=113.58 Aligned_cols=191 Identities=14% Similarity=0.052 Sum_probs=112.0
Q ss_pred ccccEEEEcCcccccccccccCCceeeecccccCCCCCCCCCCCccccchhhhhhhcCCCCceEEEEeCccccCCHHHHH
Q 010617 249 IAVNFHFCNSTYELESEAFTTFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQ 328 (506)
Q Consensus 249 ~~~~~~l~ns~~~le~~~~~~~p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~ 328 (506)
+.++.+++.+..+-+.- ....-++.+||--..+.-.. .... -++ +++++|.+--||-..--...+.
T Consensus 159 ~~a~~v~~~~~~t~~~l-~~~g~k~~~vGnPv~d~l~~-------~~~~----~l~--~~~~~lllLpGSR~ae~~~~lp 224 (396)
T TIGR03492 159 RRCLAVFVRDRLTARDL-RRQGVRASYLGNPMMDGLEP-------PERK----PLL--TGRFRIALLPGSRPPEAYRNLK 224 (396)
T ss_pred hhhCEEeCCCHHHHHHH-HHCCCeEEEeCcCHHhcCcc-------cccc----ccC--CCCCEEEEECCCCHHHHHccHH
Confidence 46677777664443332 22223788999555443221 0000 122 2345788888886332223344
Q ss_pred HHHHHHhhC----CCCEEEEEcCCCCCCCCCCCChhhHH-hh--------------cCCeEEEecc-chhhhhcCCCcce
Q 010617 329 ELALGLELC----KRPFLWVVRPDITTDANDRYPEGFQE-RV--------------AARGQMISWA-PQLRVLNHPSIAC 388 (506)
Q Consensus 329 ~~~~al~~~----~~~~i~~~~~~~~~~~~~~lp~~~~~-~~--------------~~n~~v~~~v-pq~~lL~h~~v~~ 388 (506)
.++++++.+ +.++++.+.+... .+.+...+.+ .. .+++.+..+. +-.++++.+++
T Consensus 225 ~~l~al~~L~~~~~~~~v~~~~~~~~---~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl-- 299 (396)
T TIGR03492 225 LLLRALEALPDSQPFVFLAAIVPSLS---LEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL-- 299 (396)
T ss_pred HHHHHHHHHhhCCCeEEEEEeCCCCC---HHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--
Confidence 556555443 5677777743310 0111010100 00 1224455554 34578878777
Q ss_pred EEeccCchhHHHHHHcCCcEEeccCcccchhhHHhhhcc--c-eeeeEeecCCCCCcCHHHHHHHHHHHhCChHHHHHHH
Q 010617 389 FLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDF--W-KVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARAL 465 (506)
Q Consensus 389 ~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~--l-G~G~~l~~~~~~~~~~~~l~~ai~~vl~d~~~r~~a~ 465 (506)
+|+-+|..| .|+...|+|+|++|.-..|. |+...++. + |-+..+. ..+.+.|.+++.+++.|++.+++..
T Consensus 300 vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~~~~l~g~~~~l~-----~~~~~~l~~~l~~ll~d~~~~~~~~ 372 (396)
T TIGR03492 300 GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEAQSRLLGGSVFLA-----SKNPEQAAQVVRQLLADPELLERCR 372 (396)
T ss_pred EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHhhHhhcCCEEecC-----CCCHHHHHHHHHHHHcCHHHHHHHH
Confidence 999999776 99999999999999877776 98766541 1 5555553 2356999999999999987665544
No 46
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.22 E-value=1.3e-08 Score=102.31 Aligned_cols=140 Identities=14% Similarity=0.097 Sum_probs=84.8
Q ss_pred CceEEEEeCccccC-CHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEeccchhh---hhcCC
Q 010617 309 SSVVYVSFGSFTIL-DQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLR---VLNHP 384 (506)
Q Consensus 309 ~~vV~vs~GS~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~vpq~~---lL~h~ 384 (506)
+..+++..|+.... ..+.+...+..+...+.++++.-.... ............++.+.+++++.+ +++.+
T Consensus 190 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~G~~~~------~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~a 263 (359)
T cd03823 190 GRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIVGNGLE------LEEESYELEGDPRVEFLGAYPQEEIDDFYAEI 263 (359)
T ss_pred CceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEEcCchh------hhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhC
Confidence 44677778876332 233333333333333456555443321 000000002347888899998665 57777
Q ss_pred CcceEEe----ccCc-hhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCChH
Q 010617 385 SIACFLS----HCGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQD 459 (506)
Q Consensus 385 ~v~~~It----HgG~-~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~~ 459 (506)
++ +|. ..|. .++.||+++|+|+|+.+.. .+...+.+. +.|..++. -+.+++.+++.+++.|+.
T Consensus 264 d~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~~-----~d~~~l~~~i~~l~~~~~ 331 (359)
T cd03823 264 DV--LVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELVRDG-VNGLLFPP-----GDAEDLAAALERLIDDPD 331 (359)
T ss_pred CE--EEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHhcCC-CcEEEECC-----CCHHHHHHHHHHHHhChH
Confidence 76 663 2344 5899999999999986643 355566663 57888754 358999999999999886
Q ss_pred HHHHHHH
Q 010617 460 FKARALE 466 (506)
Q Consensus 460 ~r~~a~~ 466 (506)
.++...+
T Consensus 332 ~~~~~~~ 338 (359)
T cd03823 332 LLERLRA 338 (359)
T ss_pred HHHHHHH
Confidence 5554443
No 47
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.21 E-value=3.5e-08 Score=104.18 Aligned_cols=134 Identities=13% Similarity=0.155 Sum_probs=83.8
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHhhC-CCCEEEEEcCCCCCCCCCCCChhhHHhh-cCCeEEEeccchhh---hhcCCC
Q 010617 311 VVYVSFGSFTILDQVQFQELALGLELC-KRPFLWVVRPDITTDANDRYPEGFQERV-AARGQMISWAPQLR---VLNHPS 385 (506)
Q Consensus 311 vV~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~lp~~~~~~~-~~n~~v~~~vpq~~---lL~h~~ 385 (506)
.+++..|+.. ....+..++++++.. +.+++++-.+. ..+.+.+.. ..|+.+.+++++.+ +++.++
T Consensus 264 ~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~ivG~G~--------~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aD 333 (465)
T PLN02871 264 PLIVYVGRLG--AEKNLDFLKRVMERLPGARLAFVGDGP--------YREELEKMFAGTPTVFTGMLQGDELSQAYASGD 333 (465)
T ss_pred eEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEEEeCCh--------HHHHHHHHhccCCeEEeccCCHHHHHHHHHHCC
Confidence 5566678653 233456677777665 44555443221 122232222 25778889998664 676777
Q ss_pred cceEEeccC----chhHHHHHHcCCcEEeccCcccchhhHHhhhc---cceeeeEeecCCCCCcCHHHHHHHHHHHhCCh
Q 010617 386 IACFLSHCG----WNSTMEGVSNGIPFLCWPYFGDQFLNERYICD---FWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 458 (506)
Q Consensus 386 v~~~ItHgG----~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~---~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~ 458 (506)
+ ||.-.. -.++.||+++|+|+|+....+ ....+++ . +.|..++. -+.+++.++|.++++|+
T Consensus 334 v--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~-~~G~lv~~-----~d~~~la~~i~~ll~~~ 401 (465)
T PLN02871 334 V--FVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEG-KTGFLYTP-----GDVDDCVEKLETLLADP 401 (465)
T ss_pred E--EEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCC-CceEEeCC-----CCHHHHHHHHHHHHhCH
Confidence 7 774432 357999999999999876432 2223333 3 67888754 36899999999999988
Q ss_pred HHHHHHHH
Q 010617 459 DFKARALE 466 (506)
Q Consensus 459 ~~r~~a~~ 466 (506)
+.+++..+
T Consensus 402 ~~~~~~~~ 409 (465)
T PLN02871 402 ELRERMGA 409 (465)
T ss_pred HHHHHHHH
Confidence 65544333
No 48
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.21 E-value=9.4e-09 Score=104.13 Aligned_cols=138 Identities=17% Similarity=0.065 Sum_probs=83.9
Q ss_pred CceEEEEeCcccc-CCHHHHHHHHHHHhhC-CCCEEEEEcCCCCCCCCCCCChhhHH----hhcCCeEEEeccchhh---
Q 010617 309 SSVVYVSFGSFTI-LDQVQFQELALGLELC-KRPFLWVVRPDITTDANDRYPEGFQE----RVAARGQMISWAPQLR--- 379 (506)
Q Consensus 309 ~~vV~vs~GS~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~lp~~~~~----~~~~n~~v~~~vpq~~--- 379 (506)
++.+++..|+... ...+.+...+..+... +.++++...+. ..+.+.+ ...+|+.+.+++++.+
T Consensus 219 ~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~G~~~--------~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 290 (394)
T cd03794 219 DKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIVGDGP--------EKEELKELAKALGLDNVTFLGRVPKEELPE 290 (394)
T ss_pred CcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEeCCcc--------cHHHHHHHHHHcCCCcEEEeCCCChHHHHH
Confidence 4577777887633 2234444444444333 44544433221 1122221 2347888899998765
Q ss_pred hhcCCCcceEEeccC---------chhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHH
Q 010617 380 VLNHPSIACFLSHCG---------WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNK 450 (506)
Q Consensus 380 lL~h~~v~~~ItHgG---------~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~a 450 (506)
++..+++ +|.... -+++.||+++|+|+|+.+..+.+. .+.+ .+.|..++. -+.+++.++
T Consensus 291 ~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~~~-~~~g~~~~~-----~~~~~l~~~ 358 (394)
T cd03794 291 LLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LVEE-AGAGLVVPP-----GDPEALAAA 358 (394)
T ss_pred HHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hhcc-CCcceEeCC-----CCHHHHHHH
Confidence 5666776 664322 244799999999999988765433 3344 267777754 378999999
Q ss_pred HHHHhCChHHHHHHHH
Q 010617 451 VDQVLGNQDFKARALE 466 (506)
Q Consensus 451 i~~vl~d~~~r~~a~~ 466 (506)
|.+++.|++.+++..+
T Consensus 359 i~~~~~~~~~~~~~~~ 374 (394)
T cd03794 359 ILELLDDPEERAEMGE 374 (394)
T ss_pred HHHHHhChHHHHHHHH
Confidence 9999988765554433
No 49
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.19 E-value=2.7e-09 Score=99.78 Aligned_cols=147 Identities=10% Similarity=0.060 Sum_probs=109.4
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhh--cCCeEEEeccc-hhhhhcCCC
Q 010617 309 SSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERV--AARGQMISWAP-QLRVLNHPS 385 (506)
Q Consensus 309 ~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~--~~n~~v~~~vp-q~~lL~h~~ 385 (506)
+.-|+|++|- +.+..+.-.++..+.+.++.+-++++.. .+-+.++.++. .+|..+.-... ...++..++
T Consensus 158 ~r~ilI~lGG--sDpk~lt~kvl~~L~~~~~nl~iV~gs~------~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d 229 (318)
T COG3980 158 KRDILITLGG--SDPKNLTLKVLAELEQKNVNLHIVVGSS------NPTLKNLRKRAEKYPNINLYIDTNDMAELMKEAD 229 (318)
T ss_pred hheEEEEccC--CChhhhHHHHHHHhhccCeeEEEEecCC------CcchhHHHHHHhhCCCeeeEecchhHHHHHHhcc
Confidence 4469999993 5456677788899888886655556522 34445555544 36666665554 456886666
Q ss_pred cceEEeccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCChHHHHHHH
Q 010617 386 IACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARAL 465 (506)
Q Consensus 386 v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~~~r~~a~ 465 (506)
+ .|+.||. |+.|++.-|+|.+++|+..-|.--|...+. +|+-..+.. . ++.+....-+.++..|..-|++.-
T Consensus 230 ~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~-lg~~~~l~~---~-l~~~~~~~~~~~i~~d~~~rk~l~ 301 (318)
T COG3980 230 L--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEA-LGIIKQLGY---H-LKDLAKDYEILQIQKDYARRKNLS 301 (318)
T ss_pred h--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHh-cCchhhccC---C-CchHHHHHHHHHhhhCHHHhhhhh
Confidence 6 9999987 899999999999999999999999999988 588877764 3 677777778888888888887766
Q ss_pred HHHHHH
Q 010617 466 ELKEKA 471 (506)
Q Consensus 466 ~l~~~~ 471 (506)
..++.+
T Consensus 302 ~~~~~i 307 (318)
T COG3980 302 FGSKLI 307 (318)
T ss_pred hcccee
Confidence 555444
No 50
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.17 E-value=7.5e-08 Score=99.43 Aligned_cols=87 Identities=18% Similarity=0.190 Sum_probs=61.5
Q ss_pred CCeEEEeccchhh---hhcCCCcceEEec-cCc-hhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCC
Q 010617 367 ARGQMISWAPQLR---VLNHPSIACFLSH-CGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGI 441 (506)
Q Consensus 367 ~n~~v~~~vpq~~---lL~h~~v~~~ItH-gG~-~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~ 441 (506)
+++.+.+++|+.+ +++.+++-++.+. .|. .++.||+++|+|+|+... ......+.+. ..|..++.
T Consensus 281 ~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i~~~-~~G~lv~~----- 350 (396)
T cd03818 281 SRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVITDG-ENGLLVDF----- 350 (396)
T ss_pred ceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhcccC-CceEEcCC-----
Confidence 6788889999875 5667777222232 233 489999999999998643 3455556552 56777754
Q ss_pred cCHHHHHHHHHHHhCChHHHHH
Q 010617 442 ITREEIKNKVDQVLGNQDFKAR 463 (506)
Q Consensus 442 ~~~~~l~~ai~~vl~d~~~r~~ 463 (506)
-++++++++|.+++.|++.+++
T Consensus 351 ~d~~~la~~i~~ll~~~~~~~~ 372 (396)
T cd03818 351 FDPDALAAAVIELLDDPARRAR 372 (396)
T ss_pred CCHHHHHHHHHHHHhCHHHHHH
Confidence 4699999999999998755443
No 51
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.13 E-value=9.4e-08 Score=96.37 Aligned_cols=132 Identities=13% Similarity=0.128 Sum_probs=81.7
Q ss_pred CceEEEEeCcccc-CCHHHHHHHHHHHhh--CCCCEEEEEcCCCCCCCCCCCChhhHH-----hhcCCeEEEeccchhh-
Q 010617 309 SSVVYVSFGSFTI-LDQVQFQELALGLEL--CKRPFLWVVRPDITTDANDRYPEGFQE-----RVAARGQMISWAPQLR- 379 (506)
Q Consensus 309 ~~vV~vs~GS~~~-~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~lp~~~~~-----~~~~n~~v~~~vpq~~- 379 (506)
++.+++..|+... ...+.+-.++..+.. .+.++++...+. ..+.+.+ ...+|+.+.+++|+.+
T Consensus 201 ~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~--------~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 272 (374)
T cd03817 201 DEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGP--------EREELEELARELGLADRVIFTGFVPREEL 272 (374)
T ss_pred CCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCc--------hHHHHHHHHHHcCCCCcEEEeccCChHHH
Confidence 3466677787532 233444444444433 334554444322 1122222 1247888899999775
Q ss_pred --hhcCCCcceEEec----cCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHH
Q 010617 380 --VLNHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQ 453 (506)
Q Consensus 380 --lL~h~~v~~~ItH----gG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~ 453 (506)
++..+++ +|.. |...++.||+++|+|+|+.... ..+..+.+. +.|..++.+ +. ++.+++.+
T Consensus 273 ~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~----~~~~~i~~~-~~g~~~~~~-----~~-~~~~~i~~ 339 (374)
T cd03817 273 PDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDAP----GLPDLVADG-ENGFLFPPG-----DE-ALAEALLR 339 (374)
T ss_pred HHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCCC----ChhhheecC-ceeEEeCCC-----CH-HHHHHHHH
Confidence 5777777 6633 3347899999999999986643 355566663 778888641 22 99999999
Q ss_pred HhCChHHH
Q 010617 454 VLGNQDFK 461 (506)
Q Consensus 454 vl~d~~~r 461 (506)
+++|+..+
T Consensus 340 l~~~~~~~ 347 (374)
T cd03817 340 LLQDPELR 347 (374)
T ss_pred HHhChHHH
Confidence 99987543
No 52
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.13 E-value=8.7e-08 Score=98.41 Aligned_cols=85 Identities=14% Similarity=0.227 Sum_probs=63.5
Q ss_pred cCCeEEEeccchhh---hhcCCCcceEEecc---C-chhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCC
Q 010617 366 AARGQMISWAPQLR---VLNHPSIACFLSHC---G-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE 438 (506)
Q Consensus 366 ~~n~~v~~~vpq~~---lL~h~~v~~~ItHg---G-~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~ 438 (506)
.+|+.+.+|+|+.+ +++.+++ +++.+ | -.++.||+++|+|+|+-...+ ....+++. +.|..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i~~~-~~g~~~~~-- 352 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIVVDG-VTGLLVDP-- 352 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHccCC-CCeEEeCC--
Confidence 36788899999876 4767776 77432 2 368999999999999866443 45556663 78888854
Q ss_pred CCCcCHHHHHHHHHHHhCChHHHH
Q 010617 439 GGIITREEIKNKVDQVLGNQDFKA 462 (506)
Q Consensus 439 ~~~~~~~~l~~ai~~vl~d~~~r~ 462 (506)
-+.++++++|.+++.|++.++
T Consensus 353 ---~~~~~l~~~i~~l~~~~~~~~ 373 (398)
T cd03800 353 ---RDPEALAAALRRLLTDPALRR 373 (398)
T ss_pred ---CCHHHHHHHHHHHHhCHHHHH
Confidence 369999999999998875443
No 53
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.11 E-value=1.7e-07 Score=93.73 Aligned_cols=89 Identities=13% Similarity=0.172 Sum_probs=65.6
Q ss_pred hcCCeEEEeccchh---hhhcCCCcceEEe----ccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecC
Q 010617 365 VAARGQMISWAPQL---RVLNHPSIACFLS----HCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRD 437 (506)
Q Consensus 365 ~~~n~~v~~~vpq~---~lL~h~~v~~~It----HgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~ 437 (506)
..+++.+.+++++. +++..+++ +|. -|..+++.||+++|+|+|+.+. ......+++. +.|...+.
T Consensus 254 ~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~~~~~- 325 (374)
T cd03801 254 LGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGLLVPP- 325 (374)
T ss_pred CCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceEEeCC-
Confidence 45788899999865 46767666 663 2456799999999999998765 3355566653 77887754
Q ss_pred CCCCcCHHHHHHHHHHHhCChHHHHHHH
Q 010617 438 EGGIITREEIKNKVDQVLGNQDFKARAL 465 (506)
Q Consensus 438 ~~~~~~~~~l~~ai~~vl~d~~~r~~a~ 465 (506)
.+.+++.++|.+++.|+..++...
T Consensus 326 ----~~~~~l~~~i~~~~~~~~~~~~~~ 349 (374)
T cd03801 326 ----GDPEALAEAILRLLDDPELRRRLG 349 (374)
T ss_pred ----CCHHHHHHHHHHHHcChHHHHHHH
Confidence 358999999999999886554433
No 54
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.10 E-value=2.5e-07 Score=92.47 Aligned_cols=141 Identities=14% Similarity=0.136 Sum_probs=82.8
Q ss_pred CceEEEEeCcccc-CCHHHHHHHHHHHhh--CCCCEEEEEcCCCCCCCCCCCChhhHHh--hcCCeEEEeccch-hhhhc
Q 010617 309 SSVVYVSFGSFTI-LDQVQFQELALGLEL--CKRPFLWVVRPDITTDANDRYPEGFQER--VAARGQMISWAPQ-LRVLN 382 (506)
Q Consensus 309 ~~vV~vs~GS~~~-~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~lp~~~~~~--~~~n~~v~~~vpq-~~lL~ 382 (506)
++++++..|+... ...+.+-..+..+.+ .+.++++.-.... ........... ...++.+.++..+ .++++
T Consensus 187 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 262 (359)
T cd03808 187 DDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDE----ENPAAILEIEKLGLEGRVEFLGFRDDVPELLA 262 (359)
T ss_pred CCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCc----chhhHHHHHHhcCCcceEEEeeccccHHHHHH
Confidence 4578888887633 233444444444433 2344444433221 01110000111 2356777776443 36787
Q ss_pred CCCcceEEeccC----chhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCCh
Q 010617 383 HPSIACFLSHCG----WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 458 (506)
Q Consensus 383 h~~v~~~ItHgG----~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~ 458 (506)
.+++ +|.-+. -+++.||+++|+|+|+-+..+ +...+.+. +.|...+. -+.+++.++|.+++.|+
T Consensus 263 ~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~----~~~~i~~~-~~g~~~~~-----~~~~~~~~~i~~l~~~~ 330 (359)
T cd03808 263 AADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVPG----CREAVIDG-VNGFLVPP-----GDAEALADAIERLIEDP 330 (359)
T ss_pred hccE--EEecCcccCcchHHHHHHHcCCCEEEecCCC----chhhhhcC-cceEEECC-----CCHHHHHHHHHHHHhCH
Confidence 7777 665432 578999999999999865443 34455553 67877754 36899999999999887
Q ss_pred HHHHHHH
Q 010617 459 DFKARAL 465 (506)
Q Consensus 459 ~~r~~a~ 465 (506)
+.+++..
T Consensus 331 ~~~~~~~ 337 (359)
T cd03808 331 ELRARMG 337 (359)
T ss_pred HHHHHHH
Confidence 6544433
No 55
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.04 E-value=2.1e-07 Score=94.80 Aligned_cols=87 Identities=11% Similarity=0.056 Sum_probs=61.3
Q ss_pred cCCeEEEeccch-hhhhcCCCcceEEec----cCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCC
Q 010617 366 AARGQMISWAPQ-LRVLNHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGG 440 (506)
Q Consensus 366 ~~n~~v~~~vpq-~~lL~h~~v~~~ItH----gG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~ 440 (506)
.+++.+.++.++ .++++.+++ +|.- |.-.++.||+++|+|+|+.... ..+..+++. ..|...+.
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~~----~~~e~i~~~-~~G~~~~~---- 320 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNAG----GIPEVVKHG-ETGFLVDV---- 320 (371)
T ss_pred CceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCCC----CchhhhcCC-CceEEcCC----
Confidence 356778887764 367877776 6622 3346999999999999986543 355566653 57777653
Q ss_pred CcCHHHHHHHHHHHhCChHHHHHH
Q 010617 441 IITREEIKNKVDQVLGNQDFKARA 464 (506)
Q Consensus 441 ~~~~~~l~~ai~~vl~d~~~r~~a 464 (506)
-+.+++.+++.+++.|+..+++.
T Consensus 321 -~~~~~l~~~i~~l~~~~~~~~~~ 343 (371)
T cd04962 321 -GDVEAMAEYALSLLEDDELWQEF 343 (371)
T ss_pred -CCHHHHHHHHHHHHhCHHHHHHH
Confidence 36899999999999887654443
No 56
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.03 E-value=1.9e-08 Score=102.74 Aligned_cols=138 Identities=12% Similarity=0.116 Sum_probs=84.4
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhhC-----CCCEEEEEcCCCCCCCCCCCChhhHHhh--cCCeEEEeccchh---
Q 010617 309 SSVVYVSFGSFTILDQVQFQELALGLELC-----KRPFLWVVRPDITTDANDRYPEGFQERV--AARGQMISWAPQL--- 378 (506)
Q Consensus 309 ~~vV~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~lp~~~~~~~--~~n~~v~~~vpq~--- 378 (506)
+.+|+++.+-.... ...+..+++++... +.++++...++. .....+.+.. .+|+.+.+.+++.
T Consensus 197 ~~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 269 (365)
T TIGR00236 197 KRYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLNP------VVREPLHKHLGDSKRVHLIEPLEYLDFL 269 (365)
T ss_pred CCEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCCh------HHHHHHHHHhCCCCCEEEECCCChHHHH
Confidence 34666655432111 13466677776543 455555543321 1111122222 3578887766544
Q ss_pred hhhcCCCcceEEeccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCCh
Q 010617 379 RVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 458 (506)
Q Consensus 379 ~lL~h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~ 458 (506)
.+++++++ +|+-.|.. +.||+++|+|+|.++...++.+ +.+. |.+..+. .++++|.+++.++++|+
T Consensus 270 ~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~------~d~~~i~~ai~~ll~~~ 335 (365)
T TIGR00236 270 NLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVG------TDKENITKAAKRLLTDP 335 (365)
T ss_pred HHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeC------CCHHHHHHHHHHHHhCh
Confidence 56666666 99977644 7999999999999876555543 2232 7776553 27899999999999988
Q ss_pred HHHHHHHHH
Q 010617 459 DFKARALEL 467 (506)
Q Consensus 459 ~~r~~a~~l 467 (506)
..+++..+-
T Consensus 336 ~~~~~~~~~ 344 (365)
T TIGR00236 336 DEYKKMSNA 344 (365)
T ss_pred HHHHHhhhc
Confidence 777665443
No 57
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.02 E-value=5.7e-07 Score=93.46 Aligned_cols=77 Identities=17% Similarity=0.263 Sum_probs=55.2
Q ss_pred CCeEEE-eccchhh---hhcCCCcceEEe-c----c-C-chhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEee
Q 010617 367 ARGQMI-SWAPQLR---VLNHPSIACFLS-H----C-G-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFD 435 (506)
Q Consensus 367 ~n~~v~-~~vpq~~---lL~h~~v~~~It-H----g-G-~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~ 435 (506)
+|+.+. +|+|..+ +|+.+++ +|. + | | -+++.||+++|+|+|+.... .....+++. +.|..++
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~----~~~eiv~~~-~~G~lv~ 366 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFK----CIDELVKHG-ENGLVFG 366 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCCC----CHHHHhcCC-CCEEEEC
Confidence 456555 6888664 5767777 663 1 1 2 35799999999999985542 455566663 6787762
Q ss_pred cCCCCCcCHHHHHHHHHHHhCC
Q 010617 436 RDEGGIITREEIKNKVDQVLGN 457 (506)
Q Consensus 436 ~~~~~~~~~~~l~~ai~~vl~d 457 (506)
+.++|+++|.++++|
T Consensus 367 -------d~~~la~~i~~ll~~ 381 (415)
T cd03816 367 -------DSEELAEQLIDLLSN 381 (415)
T ss_pred -------CHHHHHHHHHHHHhc
Confidence 689999999999988
No 58
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.01 E-value=7.7e-07 Score=90.10 Aligned_cols=85 Identities=12% Similarity=0.142 Sum_probs=60.2
Q ss_pred hcCCeEEEeccc-hh---hhhcCCCcceEEecc----CchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeec
Q 010617 365 VAARGQMISWAP-QL---RVLNHPSIACFLSHC----GWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDR 436 (506)
Q Consensus 365 ~~~n~~v~~~vp-q~---~lL~h~~v~~~ItHg----G~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~ 436 (506)
...++.+.+|++ +. .+++.+++ +|.-. ..+++.||+++|+|+|+....+ ....+.+. +.|..++.
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~----~~e~~~~~-~~g~~~~~ 314 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVGG----IPDIVDHG-VTGYLAKP 314 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCCC----ChhheeCC-CceEEeCC
Confidence 356677889998 44 46777776 77643 3479999999999999865432 33344442 56776643
Q ss_pred CCCCCcCHHHHHHHHHHHhCChHHH
Q 010617 437 DEGGIITREEIKNKVDQVLGNQDFK 461 (506)
Q Consensus 437 ~~~~~~~~~~l~~ai~~vl~d~~~r 461 (506)
.+.+++.+++.+++.|++.+
T Consensus 315 -----~~~~~~~~~l~~l~~~~~~~ 334 (365)
T cd03825 315 -----GDPEDLAEGIEWLLADPDER 334 (365)
T ss_pred -----CCHHHHHHHHHHHHhCHHHH
Confidence 47899999999999887633
No 59
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.97 E-value=8.2e-07 Score=92.63 Aligned_cols=82 Identities=13% Similarity=0.102 Sum_probs=59.2
Q ss_pred hhhcCCCcceEEec-----cCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHH
Q 010617 379 RVLNHPSIACFLSH-----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQ 453 (506)
Q Consensus 379 ~lL~h~~v~~~ItH-----gG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~ 453 (506)
.+++.+++ ++.. +|-.++.||+++|+|+|+-|...++.+....+.+. |.++... +.++|.++|.+
T Consensus 315 ~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~~-------d~~~La~~l~~ 384 (425)
T PRK05749 315 LLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQVE-------DAEDLAKAVTY 384 (425)
T ss_pred HHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEEC-------CHHHHHHHHHH
Confidence 56666666 3321 33345999999999999999888888887777663 6665542 68999999999
Q ss_pred HhCChHHHHHHHHHHHH
Q 010617 454 VLGNQDFKARALELKEK 470 (506)
Q Consensus 454 vl~d~~~r~~a~~l~~~ 470 (506)
+++|++.+++..+-+.+
T Consensus 385 ll~~~~~~~~m~~~a~~ 401 (425)
T PRK05749 385 LLTDPDARQAYGEAGVA 401 (425)
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 99988666554444333
No 60
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.95 E-value=9.5e-07 Score=89.13 Aligned_cols=138 Identities=11% Similarity=0.091 Sum_probs=86.1
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhhCC-CCEEEEEcCCCCCCCCCCCChhhHH-----hhcCCeEEEeccchh---h
Q 010617 309 SSVVYVSFGSFTILDQVQFQELALGLELCK-RPFLWVVRPDITTDANDRYPEGFQE-----RVAARGQMISWAPQL---R 379 (506)
Q Consensus 309 ~~vV~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~lp~~~~~-----~~~~n~~v~~~vpq~---~ 379 (506)
+..+++..|... .......+++++++.. .++++...+. ....+.+ ...+|+.+.+|+|+. .
T Consensus 190 ~~~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~G~g~--------~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~ 259 (357)
T cd03795 190 GRPFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIVGEGP--------LEAELEALAAALGLLDRVRFLGRLDDEEKAA 259 (357)
T ss_pred CCcEEEEecccc--cccCHHHHHHHHHhccCcEEEEEeCCh--------hHHHHHHHHHhcCCcceEEEcCCCCHHHHHH
Confidence 346777788753 2234556777776666 4444443222 1122221 234788999999976 4
Q ss_pred hhcCCCcceEEe---ccCc-hhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHh
Q 010617 380 VLNHPSIACFLS---HCGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVL 455 (506)
Q Consensus 380 lL~h~~v~~~It---HgG~-~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl 455 (506)
+++.+++-++-+ +.|. .++.||+++|+|+|+....+....... +. +.|...+. -+.++++++|.+++
T Consensus 260 ~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~-~~g~~~~~-----~d~~~~~~~i~~l~ 330 (357)
T cd03795 260 LLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---HG-VTGLVVPP-----GDPAALAEAIRRLL 330 (357)
T ss_pred HHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---CC-CceEEeCC-----CCHHHHHHHHHHHH
Confidence 666677733333 2344 479999999999998765554432222 22 67777753 37999999999999
Q ss_pred CChHHHHHHH
Q 010617 456 GNQDFKARAL 465 (506)
Q Consensus 456 ~d~~~r~~a~ 465 (506)
+|++.+++..
T Consensus 331 ~~~~~~~~~~ 340 (357)
T cd03795 331 EDPELRERLG 340 (357)
T ss_pred HCHHHHHHHH
Confidence 9885544333
No 61
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.94 E-value=1.7e-06 Score=85.97 Aligned_cols=189 Identities=10% Similarity=0.014 Sum_probs=103.4
Q ss_pred hhccccEEEEcCcccccccccccCCceeeecccccCCCCCCCCCCCccccchhhhhhhcCCCCceEEEEeCcccc-CCHH
Q 010617 247 AMIAVNFHFCNSTYELESEAFTTFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTI-LDQV 325 (506)
Q Consensus 247 ~~~~~~~~l~ns~~~le~~~~~~~p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~-~~~~ 325 (506)
..+.++.+++.+.............++..+++........ ....++..+++..|.... ...+
T Consensus 132 ~~~~~d~ii~~s~~~~~~~~~~~~~~~~vi~~~~~~~~~~-----------------~~~~~~~~~i~~~g~~~~~K~~~ 194 (348)
T cd03820 132 LYRRADAVVVLTEEDRALYYKKFNKNVVVIPNPLPFPPEE-----------------PSSDLKSKRILAVGRLVPQKGFD 194 (348)
T ss_pred HHhcCCEEEEeCHHHHHHhhccCCCCeEEecCCcChhhcc-----------------ccCCCCCcEEEEEEeeccccCHH
Confidence 3467888888887663111122234555555443322211 001123356666776533 2233
Q ss_pred HHHHHHHHHhhC--CCCEEEEEcCCCCCCCCCCCChhhH---Hh--hcCCeEEEeccc-hhhhhcCCCcceEEeccC---
Q 010617 326 QFQELALGLELC--KRPFLWVVRPDITTDANDRYPEGFQ---ER--VAARGQMISWAP-QLRVLNHPSIACFLSHCG--- 394 (506)
Q Consensus 326 ~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~lp~~~~---~~--~~~n~~v~~~vp-q~~lL~h~~v~~~ItHgG--- 394 (506)
.+..++..+.+. +.++++...+. ....+. ++ ...++.+.++.. -..++..+++ +|.-..
T Consensus 195 ~l~~~~~~l~~~~~~~~l~i~G~~~--------~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~ 264 (348)
T cd03820 195 LLIEAWAKIAKKHPDWKLRIVGDGP--------EREALEALIKELGLEDRVILLGFTKNIEEYYAKASI--FVLTSRFEG 264 (348)
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCC--------CHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCE--EEeCccccc
Confidence 344444444322 33444433222 111121 11 235566666633 3367877776 665542
Q ss_pred -chhHHHHHHcCCcEEeccCcccchhhHHhhhccce-eeeEeecCCCCCcCHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 010617 395 -WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWK-VGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAM 472 (506)
Q Consensus 395 -~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG-~G~~l~~~~~~~~~~~~l~~ai~~vl~d~~~r~~a~~l~~~~~ 472 (506)
-+++.||+++|+|+|+.+..+.+. .+.+. | .|...+. .+.+++.++|.+++.|++.+++..+-+..+.
T Consensus 265 ~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~~-~~~g~~~~~-----~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~ 334 (348)
T cd03820 265 FPMVLLEAMAFGLPVISFDCPTGPS----EIIED-GVNGLLVPN-----GDVEALAEALLRLMEDEELRKRMGANARESA 334 (348)
T ss_pred cCHHHHHHHHcCCCEEEecCCCchH----hhhcc-CcceEEeCC-----CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 478999999999999876544332 23332 4 7777753 4689999999999999877666555544433
No 62
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.93 E-value=2.8e-06 Score=85.20 Aligned_cols=187 Identities=13% Similarity=0.054 Sum_probs=102.7
Q ss_pred hccccEEEEcCcccccccccc--cCCceeeecccccCCCCCCCCCCCccccchhhhhhhcCCCCceEEEEeCccccC-CH
Q 010617 248 MIAVNFHFCNSTYELESEAFT--TFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTIL-DQ 324 (506)
Q Consensus 248 ~~~~~~~l~ns~~~le~~~~~--~~p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~-~~ 324 (506)
...++.+++.+...-+.-... ...++..++......... +....-.+... ..++..+++..|+.... ..
T Consensus 146 ~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~i~~~g~~~~~k~~ 217 (377)
T cd03798 146 LRRADAVIAVSEALADELKALGIDPEKVTVIPNGVDTERFS-------PADRAEARKLG-LPEDKKVILFVGRLVPRKGI 217 (377)
T ss_pred HhcCCeEEeCCHHHHHHHHHhcCCCCceEEcCCCcCcccCC-------CcchHHHHhcc-CCCCceEEEEeccCccccCH
Confidence 457788888876655443111 123455555433322211 00000000011 12244677778876432 23
Q ss_pred HHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHh-----hcCCeEEEeccchh---hhhcCCCcceEE----ec
Q 010617 325 VQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQER-----VAARGQMISWAPQL---RVLNHPSIACFL----SH 392 (506)
Q Consensus 325 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~-----~~~n~~v~~~vpq~---~lL~h~~v~~~I----tH 392 (506)
+.+-..++.+...+..+.+.+.+.. .....+.+. ..+|+.+.+++++. .++..+++ +| +-
T Consensus 218 ~~li~~~~~~~~~~~~~~l~i~g~~------~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~ 289 (377)
T cd03798 218 DYLIEALARLLKKRPDVHLVIVGDG------PLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADV--FVLPSLRE 289 (377)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEcCC------cchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCe--eecchhhc
Confidence 3333333444333234444443321 111222221 24788889999876 45666666 55 22
Q ss_pred cCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCChHH
Q 010617 393 CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDF 460 (506)
Q Consensus 393 gG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~~~ 460 (506)
|..+++.||+++|+|+|+-+..+ ....+.+. +.|...+. -+.+++.+++.+++.|+..
T Consensus 290 ~~~~~~~Ea~~~G~pvI~~~~~~----~~~~~~~~-~~g~~~~~-----~~~~~l~~~i~~~~~~~~~ 347 (377)
T cd03798 290 GFGLVLLEAMACGLPVVATDVGG----IPEIITDG-ENGLLVPP-----GDPEALAEAILRLLADPWL 347 (377)
T ss_pred cCChHHHHHHhcCCCEEEecCCC----hHHHhcCC-cceeEECC-----CCHHHHHHHHHHHhcCcHH
Confidence 45678999999999999866543 44556663 66777753 4799999999999998764
No 63
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.93 E-value=5e-08 Score=99.35 Aligned_cols=136 Identities=16% Similarity=0.153 Sum_probs=86.9
Q ss_pred CCceEEEEeCccccC-CHHHHHHHHHHHhhCCC-CEEEEEcCCCCCCCCCCCChhhHH---hh---cCCeEEEeccchh-
Q 010617 308 PSSVVYVSFGSFTIL-DQVQFQELALGLELCKR-PFLWVVRPDITTDANDRYPEGFQE---RV---AARGQMISWAPQL- 378 (506)
Q Consensus 308 ~~~vV~vs~GS~~~~-~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~lp~~~~~---~~---~~n~~v~~~vpq~- 378 (506)
+++.|++++|..... ..+.+..++++++.... ++.+++.++ ......+.+ +. .+|+.+.+...+.
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~------~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~ 270 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNH------PRTRPRIREAGLEFLGHHPNVLLISPLGYLY 270 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECC------CChHHHHHHHHHhhccCCCCEEEECCcCHHH
Confidence 355788888765432 35567778888866543 255554433 111122222 12 3677777766554
Q ss_pred --hhhcCCCcceEEeccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhC
Q 010617 379 --RVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLG 456 (506)
Q Consensus 379 --~lL~h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~ 456 (506)
.++..+++ ||+..| |.+.||++.|+|+|+++...+ +..+.+ .|++..+.. +.++|.++|.++++
T Consensus 271 ~~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~~~----~~~~~~-~g~~~~~~~------~~~~i~~~i~~ll~ 336 (363)
T cd03786 271 FLLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDRTE----RPETVE-SGTNVLVGT------DPEAILAAIEKLLS 336 (363)
T ss_pred HHHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCCCc----cchhhh-eeeEEecCC------CHHHHHHHHHHHhc
Confidence 45655666 999999 778899999999999874322 223444 377766531 58999999999998
Q ss_pred ChHHHHH
Q 010617 457 NQDFKAR 463 (506)
Q Consensus 457 d~~~r~~ 463 (506)
|+..+++
T Consensus 337 ~~~~~~~ 343 (363)
T cd03786 337 DEFAYSL 343 (363)
T ss_pred Cchhhhc
Confidence 8755544
No 64
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.90 E-value=3.2e-06 Score=87.72 Aligned_cols=116 Identities=9% Similarity=0.100 Sum_probs=72.2
Q ss_pred CCeEEEeccchhh---hhcCCCcceEEeccCc------hhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecC
Q 010617 367 ARGQMISWAPQLR---VLNHPSIACFLSHCGW------NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRD 437 (506)
Q Consensus 367 ~n~~v~~~vpq~~---lL~h~~v~~~ItHgG~------~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~ 437 (506)
+|+.+.+++|+.+ +++.+++-++.+..+. +.+.|++++|+|+|+....+.. ....+. +.|..++.
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~---~~G~~~~~- 357 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE---GIGVCVEP- 357 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh---CCcEEeCC-
Confidence 5788889998764 6778887555555332 2478999999999997654311 112222 56777754
Q ss_pred CCCCcCHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHhc
Q 010617 438 EGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTN 495 (506)
Q Consensus 438 ~~~~~~~~~l~~ai~~vl~d~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~ 495 (506)
-+.++++++|.++++|+..+++. ++..++.+.+.-+.....+++++.+.+.
T Consensus 358 ----~d~~~la~~i~~l~~~~~~~~~~---~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 408 (412)
T PRK10307 358 ----ESVEALVAAIAALARQALLRPKL---GTVAREYAERTLDKENVLRQFIADIRGL 408 (412)
T ss_pred ----CCHHHHHHHHHHHHhCHHHHHHH---HHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 36899999999999887544333 2333322222334455555555555543
No 65
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.87 E-value=6.4e-06 Score=85.17 Aligned_cols=90 Identities=17% Similarity=0.179 Sum_probs=64.2
Q ss_pred cCCeEEEeccchh---hhhcCCCcceEEe---ccCc-hhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCC
Q 010617 366 AARGQMISWAPQL---RVLNHPSIACFLS---HCGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE 438 (506)
Q Consensus 366 ~~n~~v~~~vpq~---~lL~h~~v~~~It---HgG~-~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~ 438 (506)
.+++.+.+++++. ++|+.+++ +|. +.|. .++.||+++|+|+|+....+ ....+++. +.|...+.
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~----~~e~i~~~-~~g~~~~~-- 352 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVGG----LPVAVADG-ETGLLVDG-- 352 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCCC----cHhhhccC-CceEECCC--
Confidence 3678888999875 46877777 663 2333 58999999999999866533 34455553 67777753
Q ss_pred CCCcCHHHHHHHHHHHhCChHHHHHHHHH
Q 010617 439 GGIITREEIKNKVDQVLGNQDFKARALEL 467 (506)
Q Consensus 439 ~~~~~~~~l~~ai~~vl~d~~~r~~a~~l 467 (506)
-+.++++++|.++++|+..++++.+-
T Consensus 353 ---~d~~~la~~i~~~l~~~~~~~~~~~~ 378 (405)
T TIGR03449 353 ---HDPADWADALARLLDDPRTRIRMGAA 378 (405)
T ss_pred ---CCHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 37899999999999987655444433
No 66
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.87 E-value=2.5e-06 Score=85.80 Aligned_cols=90 Identities=12% Similarity=0.040 Sum_probs=61.6
Q ss_pred cCCeEEEeccchhh---hhcCCCcceEEecc---C-chhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCC
Q 010617 366 AARGQMISWAPQLR---VLNHPSIACFLSHC---G-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE 438 (506)
Q Consensus 366 ~~n~~v~~~vpq~~---lL~h~~v~~~ItHg---G-~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~ 438 (506)
.+++.+.+|+++.+ ++..+++ +|.-. | .+++.||+++|+|+|+.+..+ ....+.+ +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~----~~~~~~~--~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKVP----WQELIEY--GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCCC----HHHHhhc--CceEEeCC--
Confidence 47888899999664 5667776 55432 2 468999999999999866432 3334433 56666642
Q ss_pred CCCcCHHHHHHHHHHHhCChHHHHHHHHHHH
Q 010617 439 GGIITREEIKNKVDQVLGNQDFKARALELKE 469 (506)
Q Consensus 439 ~~~~~~~~l~~ai~~vl~d~~~r~~a~~l~~ 469 (506)
+.+++.++|.+++.|++.+++..+-+.
T Consensus 331 ----~~~~~~~~i~~l~~~~~~~~~~~~~~~ 357 (375)
T cd03821 331 ----DVDALAAALRRALELPQRLKAMGENGR 357 (375)
T ss_pred ----ChHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 459999999999998754444443333
No 67
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.85 E-value=3.5e-06 Score=86.59 Aligned_cols=85 Identities=15% Similarity=0.156 Sum_probs=60.3
Q ss_pred cCCeEEEeccchh---hhhcCCCcceEEec---cC-chhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCC
Q 010617 366 AARGQMISWAPQL---RVLNHPSIACFLSH---CG-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE 438 (506)
Q Consensus 366 ~~n~~v~~~vpq~---~lL~h~~v~~~ItH---gG-~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~ 438 (506)
.+|+.+.+++|+. .++..+++ ++.. -| -.++.||+++|+|+|+.-..+ ....+... +.|...+.
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i~~~-~~g~~~~~-- 349 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETVVDG-ETGFLCEP-- 349 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHhccC-CceEEeCC--
Confidence 4688899999987 46777776 6632 22 257899999999999864432 33445552 56766642
Q ss_pred CCCcCHHHHHHHHHHHhCChHHHHH
Q 010617 439 GGIITREEIKNKVDQVLGNQDFKAR 463 (506)
Q Consensus 439 ~~~~~~~~l~~ai~~vl~d~~~r~~ 463 (506)
+.++++++|.++++|++.+++
T Consensus 350 ----~~~~~a~~i~~l~~~~~~~~~ 370 (392)
T cd03805 350 ----TPEEFAEAMLKLANDPDLADR 370 (392)
T ss_pred ----CHHHHHHHHHHHHhChHHHHH
Confidence 689999999999998754433
No 68
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.79 E-value=8.3e-06 Score=84.29 Aligned_cols=113 Identities=16% Similarity=0.067 Sum_probs=67.5
Q ss_pred cCCeEEEeccchhh---hhcCCCcceEEe---ccCc-hhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCC
Q 010617 366 AARGQMISWAPQLR---VLNHPSIACFLS---HCGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE 438 (506)
Q Consensus 366 ~~n~~v~~~vpq~~---lL~h~~v~~~It---HgG~-~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~ 438 (506)
.+++.+.+|+|+.+ +++.+++ +|. +-|. .++.||+++|+|+|+-+..+ ....+.+ |.+....
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~--~~~~~~~--- 317 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP--DMILLAE--- 317 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC--CceeecC---
Confidence 46688889998764 6666666 654 2244 49999999999999877643 2334433 4343322
Q ss_pred CCCcCHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHhc
Q 010617 439 GGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTN 495 (506)
Q Consensus 439 ~~~~~~~~l~~ai~~vl~d~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~ 495 (506)
-+.+++.+++.+++.+..-++ .+.+..++.+.+.-+-....+++++-+.+.
T Consensus 318 ---~~~~~l~~~l~~~l~~~~~~~---~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l 368 (398)
T cd03796 318 ---PDVESIVRKLEEAISILRTGK---HDPWSFHNRVKKMYSWEDVAKRTEKVYDRI 368 (398)
T ss_pred ---CCHHHHHHHHHHHHhChhhhh---hHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 268999999999997642111 122222222223444455555555555443
No 69
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.76 E-value=7e-06 Score=83.37 Aligned_cols=87 Identities=18% Similarity=0.256 Sum_probs=64.5
Q ss_pred hcCCeEEEeccchhh---hhcCCCcceEEec----------cCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceee
Q 010617 365 VAARGQMISWAPQLR---VLNHPSIACFLSH----------CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVG 431 (506)
Q Consensus 365 ~~~n~~v~~~vpq~~---lL~h~~v~~~ItH----------gG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G 431 (506)
..+++.+.+++|+.+ +++.+++ +|.- |--+++.||+++|+|+|+-+..+ ++..+.+. +.|
T Consensus 243 ~~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i~~~-~~g 315 (367)
T cd05844 243 LGGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAVEDG-ETG 315 (367)
T ss_pred CCCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhheecC-Cee
Confidence 357788889998764 4777776 6532 22479999999999999876643 56666664 788
Q ss_pred eEeecCCCCCcCHHHHHHHHHHHhCChHHHHH
Q 010617 432 LKFDRDEGGIITREEIKNKVDQVLGNQDFKAR 463 (506)
Q Consensus 432 ~~l~~~~~~~~~~~~l~~ai~~vl~d~~~r~~ 463 (506)
..++. -+.+++.++|.+++.|++.+++
T Consensus 316 ~~~~~-----~d~~~l~~~i~~l~~~~~~~~~ 342 (367)
T cd05844 316 LLVPE-----GDVAALAAALGRLLADPDLRAR 342 (367)
T ss_pred EEECC-----CCHHHHHHHHHHHHcCHHHHHH
Confidence 87753 4789999999999998764433
No 70
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.76 E-value=9e-06 Score=80.97 Aligned_cols=111 Identities=19% Similarity=0.177 Sum_probs=71.0
Q ss_pred CEEEE-EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHH
Q 010617 4 PRVLV-MPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLI 82 (506)
Q Consensus 4 ~~il~-~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 82 (506)
|||.| +..| -|+.-+..+.++|.++||+|.+.+-+... +.+.+.. -|+.+..+...- .++...+
T Consensus 1 MkIwiDi~~p--~hvhfFk~~I~eL~~~GheV~it~R~~~~--~~~LL~~-----yg~~y~~iG~~g------~~~~~Kl 65 (335)
T PF04007_consen 1 MKIWIDITHP--AHVHFFKNIIRELEKRGHEVLITARDKDE--TEELLDL-----YGIDYIVIGKHG------DSLYGKL 65 (335)
T ss_pred CeEEEECCCc--hHHHHHHHHHHHHHhCCCEEEEEEeccch--HHHHHHH-----cCCCeEEEcCCC------CCHHHHH
Confidence 46665 3333 49999999999999999999998876432 2222211 278888876432 1222222
Q ss_pred HHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccc
Q 010617 83 EKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPS 137 (506)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~ 137 (506)
...... ...+++.++. .+||++|+- ..+.+..+|..+|+|++.+.=.
T Consensus 66 ~~~~~R----~~~l~~~~~~---~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~ 112 (335)
T PF04007_consen 66 LESIER----QYKLLKLIKK---FKPDVAISF-GSPEAARVAFGLGIPSIVFNDT 112 (335)
T ss_pred HHHHHH----HHHHHHHHHh---hCCCEEEec-CcHHHHHHHHHhCCCeEEEecC
Confidence 222222 2233333333 799999975 4578888999999999997543
No 71
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.73 E-value=5e-06 Score=83.19 Aligned_cols=130 Identities=11% Similarity=0.039 Sum_probs=78.8
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHh--hcCCeEEEeccchhh---hhcCCC
Q 010617 311 VVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQER--VAARGQMISWAPQLR---VLNHPS 385 (506)
Q Consensus 311 vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~--~~~n~~v~~~vpq~~---lL~h~~ 385 (506)
.+++..|... .......+++++++.+.++++.-.+.. .+.+.....+. ..+++.+.+++++.+ +++.++
T Consensus 172 ~~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~----~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d 245 (335)
T cd03802 172 DYLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSD----PDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNAR 245 (335)
T ss_pred CEEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCC----HHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCc
Confidence 3445566652 223345577788888878776554331 11111111112 257888999999864 576777
Q ss_pred cceEEe--ccCc-hhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCCh
Q 010617 386 IACFLS--HCGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 458 (506)
Q Consensus 386 v~~~It--HgG~-~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~ 458 (506)
+-++-+ +-|. .++.||+++|+|+|+....+ +...+.+. ..|...+ . .+++.+++.+++.+.
T Consensus 246 ~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~----~~e~i~~~-~~g~l~~----~---~~~l~~~l~~l~~~~ 309 (335)
T cd03802 246 ALLFPILWEEPFGLVMIEAMACGTPVIAFRRGA----VPEVVEDG-VTGFLVD----S---VEELAAAVARADRLD 309 (335)
T ss_pred EEEeCCcccCCcchHHHHHHhcCCCEEEeCCCC----chhheeCC-CcEEEeC----C---HHHHHHHHHHHhccH
Confidence 733323 2343 58999999999999876532 33444441 3676663 2 999999999997543
No 72
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.72 E-value=2.6e-05 Score=78.69 Aligned_cols=140 Identities=17% Similarity=0.125 Sum_probs=80.3
Q ss_pred CceEEEEeCcccc-CCHHHHHHHHHHHhhC--CCCEEEEEcCCCCCCCCCCCChhhH---H--hhcCCeEEEeccc-hhh
Q 010617 309 SSVVYVSFGSFTI-LDQVQFQELALGLELC--KRPFLWVVRPDITTDANDRYPEGFQ---E--RVAARGQMISWAP-QLR 379 (506)
Q Consensus 309 ~~vV~vs~GS~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~lp~~~~---~--~~~~n~~v~~~vp-q~~ 379 (506)
+..+++..|.... -..+.+-..+..+... +.+++++-.+. ....+...+. + ...+++.+.++.+ ..+
T Consensus 184 ~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~----~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 259 (355)
T cd03819 184 GKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQ----GRRFYYAELLELIKRLGLQDRVTFVGHCSDMPA 259 (355)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCc----ccchHHHHHHHHHHHcCCcceEEEcCCcccHHH
Confidence 4467777777532 2344455555555543 34444444322 1111211111 1 2246788888854 336
Q ss_pred hhcCCCcceEEe--ccCc-hhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhC
Q 010617 380 VLNHPSIACFLS--HCGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLG 456 (506)
Q Consensus 380 lL~h~~v~~~It--HgG~-~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~ 456 (506)
+++.+++-++-+ +-|+ +++.||+++|+|+|+.-..+ ....+.+. +.|..++. -+.+++.++|.+++.
T Consensus 260 ~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~----~~e~i~~~-~~g~~~~~-----~~~~~l~~~i~~~~~ 329 (355)
T cd03819 260 AYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGG----ARETVRPG-ETGLLVPP-----GDAEALAQALDQILS 329 (355)
T ss_pred HHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCC----cHHHHhCC-CceEEeCC-----CCHHHHHHHHHHHHh
Confidence 787777733333 1233 69999999999999765432 44455552 57888754 479999999976554
Q ss_pred -ChHHHH
Q 010617 457 -NQDFKA 462 (506)
Q Consensus 457 -d~~~r~ 462 (506)
|++.++
T Consensus 330 ~~~~~~~ 336 (355)
T cd03819 330 LLPEGRA 336 (355)
T ss_pred hCHHHHH
Confidence 554443
No 73
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.71 E-value=5.8e-06 Score=82.22 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=60.4
Q ss_pred cCCeEEEeccchh-hhhcCCCcceEEec----cCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCC
Q 010617 366 AARGQMISWAPQL-RVLNHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGG 440 (506)
Q Consensus 366 ~~n~~v~~~vpq~-~lL~h~~v~~~ItH----gG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~ 440 (506)
.+++.+.++.+.. ++++.+++ +|.- |.-+++.||+++|+|+|+.... .....+.+. +.|...+.
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~---- 313 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDG-ENGLLVPV---- 313 (353)
T ss_pred CccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCC-CceEEECC----
Confidence 4677788887643 67877777 5532 3347899999999999986544 455667664 77888754
Q ss_pred CcCHHHH---HHHHHHHhCChHHHHHHHH
Q 010617 441 IITREEI---KNKVDQVLGNQDFKARALE 466 (506)
Q Consensus 441 ~~~~~~l---~~ai~~vl~d~~~r~~a~~ 466 (506)
-+.+++ .+++.+++.+++.++++.+
T Consensus 314 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 341 (353)
T cd03811 314 -GDEAALAAAALALLDLLLDPELRERLAA 341 (353)
T ss_pred -CCHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 356666 6667777777655554444
No 74
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.70 E-value=2.2e-05 Score=87.84 Aligned_cols=92 Identities=13% Similarity=0.144 Sum_probs=63.0
Q ss_pred cCCeEEEeccchhhh---hcCCC--cceEEec---cCc-hhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeec
Q 010617 366 AARGQMISWAPQLRV---LNHPS--IACFLSH---CGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDR 436 (506)
Q Consensus 366 ~~n~~v~~~vpq~~l---L~h~~--v~~~ItH---gG~-~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~ 436 (506)
.++|.+.+++++.++ +..++ .++||.- =|+ .++.||+++|+|+|+-...+ ....++.. ..|..+++
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g-~nGlLVdP 621 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVL-DNGLLVDP 621 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccC-CcEEEECC
Confidence 367778899888754 44332 1247764 343 69999999999999876543 23334442 56877764
Q ss_pred CCCCCcCHHHHHHHHHHHhCChHHHHHHHHH
Q 010617 437 DEGGIITREEIKNKVDQVLGNQDFKARALEL 467 (506)
Q Consensus 437 ~~~~~~~~~~l~~ai~~vl~d~~~r~~a~~l 467 (506)
-+.++|+++|.+++.|+..+++..+-
T Consensus 622 -----~D~eaLA~AL~~LL~Dpelr~~m~~~ 647 (1050)
T TIGR02468 622 -----HDQQAIADALLKLVADKQLWAECRQN 647 (1050)
T ss_pred -----CCHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 47899999999999998665554443
No 75
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.70 E-value=1.5e-05 Score=80.35 Aligned_cols=86 Identities=13% Similarity=0.183 Sum_probs=60.4
Q ss_pred hcCCeEEE-eccchh---hhhcCCCcceEEe--c----cCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEe
Q 010617 365 VAARGQMI-SWAPQL---RVLNHPSIACFLS--H----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKF 434 (506)
Q Consensus 365 ~~~n~~v~-~~vpq~---~lL~h~~v~~~It--H----gG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l 434 (506)
..+|+.+. .|+|+. .+++.+++ +|. . |..+++.||+++|+|+|+.+..+ ...+... +.|...
T Consensus 245 ~~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~ 316 (366)
T cd03822 245 LADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLV 316 (366)
T ss_pred CCCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEE
Confidence 34677777 458875 56666666 652 2 33468999999999999877654 2334453 677777
Q ss_pred ecCCCCCcCHHHHHHHHHHHhCChHHHHH
Q 010617 435 DRDEGGIITREEIKNKVDQVLGNQDFKAR 463 (506)
Q Consensus 435 ~~~~~~~~~~~~l~~ai~~vl~d~~~r~~ 463 (506)
+. -+.+++.+++.++++|++.+++
T Consensus 317 ~~-----~d~~~~~~~l~~l~~~~~~~~~ 340 (366)
T cd03822 317 PP-----GDPAALAEAIRRLLADPELAQA 340 (366)
T ss_pred cC-----CCHHHHHHHHHHHHcChHHHHH
Confidence 54 3689999999999998654443
No 76
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.70 E-value=1.8e-05 Score=82.19 Aligned_cols=73 Identities=14% Similarity=0.181 Sum_probs=51.3
Q ss_pred EEeccchhhhhcCCCcceEEeccC----chhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHH
Q 010617 371 MISWAPQLRVLNHPSIACFLSHCG----WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREE 446 (506)
Q Consensus 371 v~~~vpq~~lL~h~~v~~~ItHgG----~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~ 446 (506)
+.++.+..+++...++ ||.-+- -+++.||+++|+|+|+.-... + .-+.+. +-|...+ +.++
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~-~ng~~~~-------~~~~ 352 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQF-PNCRTYD-------DGKG 352 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecC-CceEecC-------CHHH
Confidence 3466677778877776 887743 478999999999999876443 2 233332 4454442 5889
Q ss_pred HHHHHHHHhCCh
Q 010617 447 IKNKVDQVLGNQ 458 (506)
Q Consensus 447 l~~ai~~vl~d~ 458 (506)
+.+++.++|.++
T Consensus 353 ~a~ai~~~l~~~ 364 (462)
T PLN02846 353 FVRATLKALAEE 364 (462)
T ss_pred HHHHHHHHHccC
Confidence 999999999754
No 77
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.70 E-value=1.8e-05 Score=79.70 Aligned_cols=83 Identities=17% Similarity=0.237 Sum_probs=60.2
Q ss_pred cCCeEEEeccchh---hhhcCCCcceEEe----------ccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeee
Q 010617 366 AARGQMISWAPQL---RVLNHPSIACFLS----------HCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGL 432 (506)
Q Consensus 366 ~~n~~v~~~vpq~---~lL~h~~v~~~It----------HgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~ 432 (506)
.+|+.+.+++|+. .+++.+++ +|. -|.-+++.||+++|+|+|+.+..+ ....+++. ..|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~-~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVEDG-ETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhCC-CceE
Confidence 4788899999866 46666776 555 233479999999999999876532 22344442 4787
Q ss_pred EeecCCCCCcCHHHHHHHHHHHhCChHH
Q 010617 433 KFDRDEGGIITREEIKNKVDQVLGNQDF 460 (506)
Q Consensus 433 ~l~~~~~~~~~~~~l~~ai~~vl~d~~~ 460 (506)
..+. -+.+++.++|.+++.|+..
T Consensus 308 ~~~~-----~~~~~l~~~i~~~~~~~~~ 330 (355)
T cd03799 308 LVPP-----GDPEALADAIERLLDDPEL 330 (355)
T ss_pred EeCC-----CCHHHHHHHHHHHHhCHHH
Confidence 7753 3799999999999988754
No 78
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.65 E-value=3.9e-05 Score=77.57 Aligned_cols=154 Identities=15% Similarity=0.196 Sum_probs=81.0
Q ss_pred EEEEeCccccCCHHHHHHHHHHHhhCC--CCEEEEEcCCCCCCCCCCCChhhH--HhhcCCeEEEeccchhh---hhcCC
Q 010617 312 VYVSFGSFTILDQVQFQELALGLELCK--RPFLWVVRPDITTDANDRYPEGFQ--ERVAARGQMISWAPQLR---VLNHP 384 (506)
Q Consensus 312 V~vs~GS~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~lp~~~~--~~~~~n~~v~~~vpq~~---lL~h~ 384 (506)
.++..|+... ..-+..+++++.... .+++++-... ....+...+. ....+++.+.+++++.+ ++..+
T Consensus 195 ~i~~~G~~~~--~Kg~~~li~a~~~l~~~~~l~ivG~~~----~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~a 268 (363)
T cd04955 195 YYLLVGRIVP--ENNIDDLIEAFSKSNSGKKLVIVGNAD----HNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYA 268 (363)
T ss_pred EEEEEecccc--cCCHHHHHHHHHhhccCceEEEEcCCC----CcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhC
Confidence 3456777542 223445566665544 4544444322 1111111122 12347888899999875 45455
Q ss_pred CcceEEeccC----c-hhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCChH
Q 010617 385 SIACFLSHCG----W-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQD 459 (506)
Q Consensus 385 ~v~~~ItHgG----~-~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~~ 459 (506)
++ ++.+.- . +++.||+++|+|+|+....+ +...++. .|...+. .+.++++|.++++|+.
T Consensus 269 d~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~~---~g~~~~~-------~~~l~~~i~~l~~~~~ 332 (363)
T cd04955 269 AL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLGD---KAIYFKV-------GDDLASLLEELEADPE 332 (363)
T ss_pred CE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeecC---CeeEecC-------chHHHHHHHHHHhCHH
Confidence 55 555433 2 58999999999999865442 1122222 2333332 1129999999999874
Q ss_pred HHHHHHHHHHHHHhhhhcCCChHHHHHHHHH
Q 010617 460 FKARALELKEKAMSSVREGGSSYKTFQNFLQ 490 (506)
Q Consensus 460 ~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~ 490 (506)
.+++ +++..++.+.+.-+-....+++++
T Consensus 333 ~~~~---~~~~~~~~~~~~fs~~~~~~~~~~ 360 (363)
T cd04955 333 EVSA---MAKAARERIREKYTWEKIADQYEE 360 (363)
T ss_pred HHHH---HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4433 333333322223333444455444
No 79
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.63 E-value=3.7e-05 Score=77.60 Aligned_cols=87 Identities=11% Similarity=0.036 Sum_probs=59.8
Q ss_pred cCCeEEEeccch-hhhhcCCCcceEEec----cCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCC
Q 010617 366 AARGQMISWAPQ-LRVLNHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGG 440 (506)
Q Consensus 366 ~~n~~v~~~vpq-~~lL~h~~v~~~ItH----gG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~ 440 (506)
.+++.+.++..+ .+++..+++ +|.- |--+++.||+++|+|+|+-...+ ....+.+ +.|..+..
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~~---- 315 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSLD---- 315 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeCC----
Confidence 467778877443 467877777 5543 34579999999999999865543 3334443 45555432
Q ss_pred CcCHHHHHHHHHHHhCChHHHHHHH
Q 010617 441 IITREEIKNKVDQVLGNQDFKARAL 465 (506)
Q Consensus 441 ~~~~~~l~~ai~~vl~d~~~r~~a~ 465 (506)
-++++++++|.++++|+..+++..
T Consensus 316 -~~~~~~a~~i~~l~~~~~~~~~~~ 339 (358)
T cd03812 316 -ESPEIWAEEILKLKSEDRRERSSE 339 (358)
T ss_pred -CCHHHHHHHHHHHHhCcchhhhhh
Confidence 258999999999999987665443
No 80
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.62 E-value=5.2e-05 Score=79.44 Aligned_cols=86 Identities=16% Similarity=0.165 Sum_probs=60.6
Q ss_pred cCCeEEEeccchhhh---hcCC--CcceEEecc---C-chhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeec
Q 010617 366 AARGQMISWAPQLRV---LNHP--SIACFLSHC---G-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDR 436 (506)
Q Consensus 366 ~~n~~v~~~vpq~~l---L~h~--~v~~~ItHg---G-~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~ 436 (506)
.+++.+.+++++.++ ++.+ ++++||... | -.++.||+++|+|+|+....+ +...+.+. ..|..++.
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg----~~eiv~~~-~~G~lv~~ 390 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGG----PRDIIANC-RNGLLVDV 390 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCC----cHHHhcCC-CcEEEeCC
Confidence 467778888887765 5433 224487653 3 359999999999999876533 44445552 56877754
Q ss_pred CCCCCcCHHHHHHHHHHHhCChHHH
Q 010617 437 DEGGIITREEIKNKVDQVLGNQDFK 461 (506)
Q Consensus 437 ~~~~~~~~~~l~~ai~~vl~d~~~r 461 (506)
-+.++++++|.++++|+..+
T Consensus 391 -----~d~~~la~~i~~ll~~~~~~ 410 (439)
T TIGR02472 391 -----LDLEAIASALEDALSDSSQW 410 (439)
T ss_pred -----CCHHHHHHHHHHHHhCHHHH
Confidence 47899999999999987544
No 81
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.61 E-value=4.6e-05 Score=76.88 Aligned_cols=93 Identities=14% Similarity=0.122 Sum_probs=61.2
Q ss_pred cCCeEEEeccch-hhhhcCCCcceEEecc----CchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCC
Q 010617 366 AARGQMISWAPQ-LRVLNHPSIACFLSHC----GWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGG 440 (506)
Q Consensus 366 ~~n~~v~~~vpq-~~lL~h~~v~~~ItHg----G~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~ 440 (506)
.+|+.+.++..+ .++++.+++ +|.-. .-+++.||+++|+|+|+. |...+...+++ .|. .+..
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~-~g~--~~~~---- 310 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD-SGL--IVPI---- 310 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC-Cce--EeCC----
Confidence 357778877654 468877777 55432 247899999999999974 34445555554 244 4432
Q ss_pred CcCHHHHHHHHHHHh-CChHHHHHHHHHHHHHH
Q 010617 441 IITREEIKNKVDQVL-GNQDFKARALELKEKAM 472 (506)
Q Consensus 441 ~~~~~~l~~ai~~vl-~d~~~r~~a~~l~~~~~ 472 (506)
-+.+++++++.+++ .++.+++...+.++.+.
T Consensus 311 -~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~ 342 (360)
T cd04951 311 -SDPEALANKIDEILKMSGEERDIIGARRERIV 342 (360)
T ss_pred -CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 37899999999998 45566655544433333
No 82
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.58 E-value=0.00022 Score=71.38 Aligned_cols=81 Identities=15% Similarity=0.197 Sum_probs=55.4
Q ss_pred cCCeEEEeccc-hhhhhcCCCcceEEeccC----chhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCC
Q 010617 366 AARGQMISWAP-QLRVLNHPSIACFLSHCG----WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGG 440 (506)
Q Consensus 366 ~~n~~v~~~vp-q~~lL~h~~v~~~ItHgG----~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~ 440 (506)
.+++.+.+... ..++++.+++ +|..+. .+++.||+++|+|+|+.... .+...+.+ .|..++.
T Consensus 250 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~----~~~e~~~~---~g~~~~~---- 316 (365)
T cd03807 250 EDKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDVG----DNAELVGD---TGFLVPP---- 316 (365)
T ss_pred CceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCCC----ChHHHhhc---CCEEeCC----
Confidence 35666665443 3468877777 776544 37999999999999985433 34444443 4555543
Q ss_pred CcCHHHHHHHHHHHhCChHH
Q 010617 441 IITREEIKNKVDQVLGNQDF 460 (506)
Q Consensus 441 ~~~~~~l~~ai~~vl~d~~~ 460 (506)
-+.+++.++|.++++|++.
T Consensus 317 -~~~~~l~~~i~~l~~~~~~ 335 (365)
T cd03807 317 -GDPEALAEAIEALLADPAL 335 (365)
T ss_pred -CCHHHHHHHHHHHHhChHH
Confidence 3689999999999988743
No 83
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.58 E-value=2.8e-05 Score=79.18 Aligned_cols=131 Identities=18% Similarity=0.149 Sum_probs=78.9
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHhhCC--CCEEEEEcCCCCCCCCCCCChhhHH-----hhcCCeEEEeccch--hh-
Q 010617 310 SVVYVSFGSFTILDQVQFQELALGLELCK--RPFLWVVRPDITTDANDRYPEGFQE-----RVAARGQMISWAPQ--LR- 379 (506)
Q Consensus 310 ~vV~vs~GS~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~lp~~~~~-----~~~~n~~v~~~vpq--~~- 379 (506)
+.+++..|.........+..+++++.... .+++++-.+. ..+.+.+ ..++++.+.+|+++ ..
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~--------~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~ 251 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGS--------DFEKCKAYSRELGIEQRIIWHGWQSQPWEVV 251 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCc--------cHHHHHHHHHHcCCCCeEEEecccCCcHHHH
Confidence 35667777653222334556677765543 3444333222 1122222 13478888898854 33
Q ss_pred --hhcCCCcceEEec----cCchhHHHHHHcCCcEEecc-CcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHH
Q 010617 380 --VLNHPSIACFLSH----CGWNSTMEGVSNGIPFLCWP-YFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVD 452 (506)
Q Consensus 380 --lL~h~~v~~~ItH----gG~~sv~eal~~GvP~v~~P-~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~ 452 (506)
.++.+++ +|.. |--.++.||+++|+|+|+.- ..+ ....+++. ..|..++. -+.++++++|.
T Consensus 252 ~~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~-~~G~lv~~-----~d~~~la~~i~ 319 (359)
T PRK09922 252 QQKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPG-LNGELYTP-----GNIDEFVGKLN 319 (359)
T ss_pred HHHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCC-CceEEECC-----CCHHHHHHHHH
Confidence 3434455 6643 22479999999999999865 332 22344442 56877754 48999999999
Q ss_pred HHhCChHH
Q 010617 453 QVLGNQDF 460 (506)
Q Consensus 453 ~vl~d~~~ 460 (506)
++++|++.
T Consensus 320 ~l~~~~~~ 327 (359)
T PRK09922 320 KVISGEVK 327 (359)
T ss_pred HHHhCccc
Confidence 99998863
No 84
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.55 E-value=1.3e-05 Score=84.49 Aligned_cols=220 Identities=12% Similarity=0.084 Sum_probs=122.7
Q ss_pred cccEEEEcCcccccccccccCCceeeec-ccccCCCCCCCCCCCccccchhhhhhhcCCCCceEEEEeCccccCCHHHHH
Q 010617 250 AVNFHFCNSTYELESEAFTTFPELLPIG-PLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQ 328 (506)
Q Consensus 250 ~~~~~l~ns~~~le~~~~~~~p~v~~VG-pl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~ 328 (506)
..|.+++--++|-+.- ....-++.||| |+....... +...+..+-+.-.+++++|-+--||-.+-=...+.
T Consensus 361 ~vD~ll~IfPFE~~~y-~~~gv~v~yVGHPL~d~i~~~-------~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllP 432 (608)
T PRK01021 361 YLDLLLLILPFEQNLF-KDSPLRTVYLGHPLVETISSF-------SPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLT 432 (608)
T ss_pred HhhhheecCccCHHHH-HhcCCCeEEECCcHHhhcccC-------CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 5667777777776665 55566889999 555442211 12222223333334567999999985432234455
Q ss_pred HHHHHHh--hC--CCCEEEEEcCCCCCCCCCCCChhhHHhhc-C---CeEEEeccchhhhhcCCCcceEEeccCchhHHH
Q 010617 329 ELALGLE--LC--KRPFLWVVRPDITTDANDRYPEGFQERVA-A---RGQMISWAPQLRVLNHPSIACFLSHCGWNSTME 400 (506)
Q Consensus 329 ~~~~al~--~~--~~~~i~~~~~~~~~~~~~~lp~~~~~~~~-~---n~~v~~~vpq~~lL~h~~v~~~ItHgG~~sv~e 400 (506)
.++++.+ .. +.++++..... ...+.+.+... . .+.+..--...++++.+++ .+.-+|. .+.|
T Consensus 433 v~l~aa~~~~l~~~l~fvvp~a~~-------~~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLE 502 (608)
T PRK01021 433 IQVQAFLASSLASTHQLLVSSANP-------KYDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLE 502 (608)
T ss_pred HHHHHHHHHHhccCeEEEEecCch-------hhHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHH
Confidence 5666665 33 34555543322 11112222221 1 1233311012578877776 7877776 5679
Q ss_pred HHHcCCcEEecc-CcccchhhHHhhhc----cce-----eeeEeecC--C-CCCcCHHHHHHHHHHHhCChHHHHHHHHH
Q 010617 401 GVSNGIPFLCWP-YFGDQFLNERYICD----FWK-----VGLKFDRD--E-GGIITREEIKNKVDQVLGNQDFKARALEL 467 (506)
Q Consensus 401 al~~GvP~v~~P-~~~DQ~~na~rv~~----~lG-----~G~~l~~~--~-~~~~~~~~l~~ai~~vl~d~~~r~~a~~l 467 (506)
+...|+|||++= ...=-+..|+++.+ ..+ +|..+-++ . .++.|++.|++++ ++|.|+++|++.++-
T Consensus 503 aAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~ 581 (608)
T PRK01021 503 TALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDA 581 (608)
T ss_pred HHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 999999998843 22222334555543 001 12222221 1 1468999999997 888888777777776
Q ss_pred HHHHHhhhhcCCChHHHHHHH
Q 010617 468 KEKAMSSVREGGSSYKTFQNF 488 (506)
Q Consensus 468 ~~~~~~~~~~gg~~~~~~~~~ 488 (506)
-+++++.+.+|.++.++.-..
T Consensus 582 l~~lr~~Lg~~~~~~~~~~~~ 602 (608)
T PRK01021 582 CRDLYQAMNESASTMKECLSL 602 (608)
T ss_pred HHHHHHHhcCCCCCHHHHHHH
Confidence 677777666666665554433
No 85
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.54 E-value=3.4e-05 Score=77.65 Aligned_cols=93 Identities=13% Similarity=0.184 Sum_probs=63.2
Q ss_pred hcCCeEEEeccchh---hhhcCCCcceEEec----cCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecC
Q 010617 365 VAARGQMISWAPQL---RVLNHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRD 437 (506)
Q Consensus 365 ~~~n~~v~~~vpq~---~lL~h~~v~~~ItH----gG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~ 437 (506)
..+|+.+.+++|+. ++++.+++ +|.- |..+++.||+++|+|+|+....+ ....+.+ .|..+..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~---~~~~~~~- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAGD---AALYFDP- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceecC---ceeeeCC-
Confidence 45788888999877 45666666 4432 33468999999999999855422 1122222 3445543
Q ss_pred CCCCcCHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q 010617 438 EGGIITREEIKNKVDQVLGNQDFKARALELKEKA 471 (506)
Q Consensus 438 ~~~~~~~~~l~~ai~~vl~d~~~r~~a~~l~~~~ 471 (506)
-+.+++.++|.+++.|+..+.+..+-+.+.
T Consensus 321 ----~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 350 (365)
T cd03809 321 ----LDPEALAAAIERLLEDPALREELRERGLAR 350 (365)
T ss_pred ----CCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 378999999999999998777666555433
No 86
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.52 E-value=0.00041 Score=70.79 Aligned_cols=84 Identities=11% Similarity=0.079 Sum_probs=58.4
Q ss_pred CCeEEEeccc-hhhhhcCCCcceEE--ec--cCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCC
Q 010617 367 ARGQMISWAP-QLRVLNHPSIACFL--SH--CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGI 441 (506)
Q Consensus 367 ~n~~v~~~vp-q~~lL~h~~v~~~I--tH--gG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~ 441 (506)
.++.+.++.. -.++++.+++ +| ++ |--.++.||+++|+|+|+-...+ +...+++. ..|..++.
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g----~~e~i~~~-~~g~~~~~----- 322 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVGG----NPELVQHG-VTGALVPP----- 322 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCCC----cHHHhcCC-CceEEeCC-----
Confidence 4555656543 3367877777 65 33 33479999999999999866533 44455552 56777754
Q ss_pred cCHHHHHHHHHHHhCChHHHH
Q 010617 442 ITREEIKNKVDQVLGNQDFKA 462 (506)
Q Consensus 442 ~~~~~l~~ai~~vl~d~~~r~ 462 (506)
-+.++++++|.+++.|+..++
T Consensus 323 ~d~~~la~~i~~l~~~~~~~~ 343 (374)
T TIGR03088 323 GDAVALARALQPYVSDPAARR 343 (374)
T ss_pred CCHHHHHHHHHHHHhCHHHHH
Confidence 468999999999998875443
No 87
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.50 E-value=0.0002 Score=71.89 Aligned_cols=314 Identities=12% Similarity=0.093 Sum_probs=181.7
Q ss_pred CccCHHHHHHHHHHHHhC--CCeEEEEe-CCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHHHHHHhC
Q 010617 13 AQGHVIPLLEFSQCLAKH--GFRVTFVN-TDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVM 89 (506)
Q Consensus 13 ~~GH~~p~l~La~~L~~r--Gh~Vt~~~-~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (506)
+.|-++-..+|.++|.++ ++.|++-+ ++-..+.+++.. ++.+...-+|-..+.
T Consensus 58 SVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~------~~~v~h~YlP~D~~~------------------ 113 (419)
T COG1519 58 SVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALF------GDSVIHQYLPLDLPI------------------ 113 (419)
T ss_pred chhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHc------CCCeEEEecCcCchH------------------
Confidence 568899999999999998 88988887 555556665543 223444444432221
Q ss_pred cHHHHHHHHHHhcCCCCCccEEEecCC--cchHHHHHHHcCCceEEEccchHHHHHHHhhccccccCCCCCCCCCCcccc
Q 010617 90 PGKLEELIEEINSREDEKIDCFIADGN--IGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSHGMIPCHV 167 (506)
Q Consensus 90 ~~~~~~ll~~l~~~~~~~~DlvV~D~~--~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 167 (506)
.++.+++. ++||++|.--. ++....-++..|||.+.+.-- ++
T Consensus 114 --~v~rFl~~------~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR-------------------LS--------- 157 (419)
T COG1519 114 --AVRRFLRK------WRPKLLIIMETELWPNLINELKRRGIPLVLVNAR-------------------LS--------- 157 (419)
T ss_pred --HHHHHHHh------cCCCEEEEEeccccHHHHHHHHHcCCCEEEEeee-------------------ec---------
Confidence 15555667 89998885443 346788888999999996421 00
Q ss_pred CCCCCCCCCCcccccccccchhheeehhccccCCCCCcccceeecCCCCCCCcccccccccCCCchhHHHHHHHHHHHHh
Q 010617 168 IPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRA 247 (506)
Q Consensus 168 ~~y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 247 (506)
.+.++ .+..+....+.
T Consensus 158 ----------------------------------------------------~rS~~------------~y~k~~~~~~~ 173 (419)
T COG1519 158 ----------------------------------------------------DRSFA------------RYAKLKFLARL 173 (419)
T ss_pred ----------------------------------------------------hhhhH------------HHHHHHHHHHH
Confidence 00000 00011111222
Q ss_pred -hccccEEEEcCccccccccccc-CCceeeecccccCCCCCCCCCCCccccchhhhhhhcCCCCceEEEEeCccccCCHH
Q 010617 248 -MIAVNFHFCNSTYELESEAFTT-FPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQV 325 (506)
Q Consensus 248 -~~~~~~~l~ns~~~le~~~~~~-~p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~ 325 (506)
..+.+++++.+-..-+-. ..+ .+++...|-+-.+.... ...+.++..|-..-+....+.|..+| -..+.+
T Consensus 174 ~~~~i~li~aQse~D~~Rf-~~LGa~~v~v~GNlKfd~~~~------~~~~~~~~~~r~~l~~~r~v~iaaST-H~GEee 245 (419)
T COG1519 174 LFKNIDLILAQSEEDAQRF-RSLGAKPVVVTGNLKFDIEPP------PQLAAELAALRRQLGGHRPVWVAAST-HEGEEE 245 (419)
T ss_pred HHHhcceeeecCHHHHHHH-HhcCCcceEEecceeecCCCC------hhhHHHHHHHHHhcCCCCceEEEecC-CCchHH
Confidence 256777777775443332 111 23466666665554322 11222222333322221256666666 334566
Q ss_pred HHHHHHHHHhhCC--CCEEEEEcCCCCCCCCCCCChh--hHHh---------------hcCCeEEEecc-chhhhhcCCC
Q 010617 326 QFQELALGLELCK--RPFLWVVRPDITTDANDRYPEG--FQER---------------VAARGQMISWA-PQLRVLNHPS 385 (506)
Q Consensus 326 ~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~lp~~--~~~~---------------~~~n~~v~~~v-pq~~lL~h~~ 385 (506)
.+-....++.+.. ..+||+ ..+ .+..++- ..++ ...++.+.+-+ -...+++-++
T Consensus 246 i~l~~~~~l~~~~~~~llIlV-PRH-----pERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~ad 319 (419)
T COG1519 246 IILDAHQALKKQFPNLLLILV-PRH-----PERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIAD 319 (419)
T ss_pred HHHHHHHHHHhhCCCceEEEe-cCC-----hhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhcc
Confidence 6666666664433 333433 333 0111110 0000 01234444332 2333444444
Q ss_pred c----ceEEeccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCChHHH
Q 010617 386 I----ACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFK 461 (506)
Q Consensus 386 v----~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~~~r 461 (506)
+ +-++-+||+| ..|+++.|+|++.=|+..-|.+-++++... |.|+.++ +.+.|.+++..++.|+..|
T Consensus 320 iAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~-ga~~~v~-------~~~~l~~~v~~l~~~~~~r 390 (419)
T COG1519 320 IAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQA-GAGLQVE-------DADLLAKAVELLLADEDKR 390 (419)
T ss_pred EEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHhc-CCeEEEC-------CHHHHHHHHHHhcCCHHHH
Confidence 4 3356799997 689999999999999999999999999996 9999995 3888999999999888766
Q ss_pred HHHHHHHHHHHh
Q 010617 462 ARALELKEKAMS 473 (506)
Q Consensus 462 ~~a~~l~~~~~~ 473 (506)
++..+-...+-+
T Consensus 391 ~~~~~~~~~~v~ 402 (419)
T COG1519 391 EAYGRAGLEFLA 402 (419)
T ss_pred HHHHHHHHHHHH
Confidence 666444444443
No 88
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.44 E-value=0.0013 Score=72.38 Aligned_cols=88 Identities=15% Similarity=0.203 Sum_probs=56.9
Q ss_pred cCCeEEEecc-ch---hhhhcC-CC-cceEEec---cCc-hhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEee
Q 010617 366 AARGQMISWA-PQ---LRVLNH-PS-IACFLSH---CGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFD 435 (506)
Q Consensus 366 ~~n~~v~~~v-pq---~~lL~h-~~-v~~~ItH---gG~-~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~ 435 (506)
.+++.+.++. +. .+++.+ ++ .++||.= =|. .++.||+++|+|+|+--..+ .+..|++. ..|..++
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG----~~EiV~dg-~tGfLVd 692 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGG----PLEIIQDG-VSGFHID 692 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcCC-CcEEEeC
Confidence 3677777764 32 234432 21 2336642 233 59999999999999865543 55566663 6788886
Q ss_pred cCCCCCcCHHHHHHHHHHHh----CChHHHHH
Q 010617 436 RDEGGIITREEIKNKVDQVL----GNQDFKAR 463 (506)
Q Consensus 436 ~~~~~~~~~~~l~~ai~~vl----~d~~~r~~ 463 (506)
+ -++++++++|.+++ .|+..+++
T Consensus 693 p-----~D~eaLA~aL~~ll~kll~dp~~~~~ 719 (784)
T TIGR02470 693 P-----YHGEEAAEKIVDFFEKCDEDPSYWQK 719 (784)
T ss_pred C-----CCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5 36888999988875 57755444
No 89
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.43 E-value=0.00035 Score=71.57 Aligned_cols=141 Identities=12% Similarity=0.109 Sum_probs=80.4
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHhhC--CCCEEEEEcCCCCCCCCCCCChhhHHh---h---cCCeEEE-eccchh--
Q 010617 310 SVVYVSFGSFTILDQVQFQELALGLELC--KRPFLWVVRPDITTDANDRYPEGFQER---V---AARGQMI-SWAPQL-- 378 (506)
Q Consensus 310 ~vV~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~lp~~~~~~---~---~~n~~v~-~~vpq~-- 378 (506)
..+++..|.... ..-+..++++++.. +.++++..++.. ...+.+.+.+. . ..++... +++++.
T Consensus 201 ~~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 274 (388)
T TIGR02149 201 RPYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPD----TPEVAEEVRQAVALLDRNRTGIIWINKMLPKEEL 274 (388)
T ss_pred ceEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCC----cHHHHHHHHHHHHHhccccCceEEecCCCCHHHH
Confidence 356666776532 23355566666554 456555544331 11111222221 1 1235544 678765
Q ss_pred -hhhcCCCcceEEec----cCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCC-CCCcCHHHHHHHHH
Q 010617 379 -RVLNHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE-GGIITREEIKNKVD 452 (506)
Q Consensus 379 -~lL~h~~v~~~ItH----gG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~-~~~~~~~~l~~ai~ 452 (506)
+++..+++ +|.= |.-.++.||+++|+|+|+.... .....+++. +.|..++.+. +..-..+++.++|.
T Consensus 275 ~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i~~~-~~G~~~~~~~~~~~~~~~~l~~~i~ 347 (388)
T TIGR02149 275 VELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVVVDG-ETGFLVPPDNSDADGFQAELAKAIN 347 (388)
T ss_pred HHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHhhCC-CceEEcCCCCCcccchHHHHHHHHH
Confidence 46767776 6642 2235789999999999986643 355556553 6788886521 01112389999999
Q ss_pred HHhCChHHHHH
Q 010617 453 QVLGNQDFKAR 463 (506)
Q Consensus 453 ~vl~d~~~r~~ 463 (506)
+++.|+.-+++
T Consensus 348 ~l~~~~~~~~~ 358 (388)
T TIGR02149 348 ILLADPELAKK 358 (388)
T ss_pred HHHhCHHHHHH
Confidence 99988754443
No 90
>PLN02275 transferase, transferring glycosyl groups
Probab=98.42 E-value=0.00032 Score=71.83 Aligned_cols=75 Identities=17% Similarity=0.212 Sum_probs=53.0
Q ss_pred CCeEEE-eccchhhh---hcCCCcceEEe----c--cC-chhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEee
Q 010617 367 ARGQMI-SWAPQLRV---LNHPSIACFLS----H--CG-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFD 435 (506)
Q Consensus 367 ~n~~v~-~~vpq~~l---L~h~~v~~~It----H--gG-~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~ 435 (506)
+|+.+. .|+|+.++ |+.+++ +|. . -| -+++.||+++|+|+|+.... .+...+++. +.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~g----g~~eiv~~g-~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIGELVKDG-KNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecCC----ChHHHccCC-CCeEEEC
Confidence 556665 47888755 777777 663 1 12 25799999999999986532 355666663 6788773
Q ss_pred cCCCCCcCHHHHHHHHHHHh
Q 010617 436 RDEGGIITREEIKNKVDQVL 455 (506)
Q Consensus 436 ~~~~~~~~~~~l~~ai~~vl 455 (506)
++++++++|.+++
T Consensus 359 -------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 -------SSSELADQLLELL 371 (371)
T ss_pred -------CHHHHHHHHHHhC
Confidence 4789999998875
No 91
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.38 E-value=4.6e-05 Score=77.04 Aligned_cols=217 Identities=15% Similarity=0.119 Sum_probs=121.7
Q ss_pred cccEEEEcCcccccccccccCCceeeec-ccccCCCCCCCCCCCccccchhhhhhhcCCCCceEEEEeCccccCCHHHHH
Q 010617 250 AVNFHFCNSTYELESEAFTTFPELLPIG-PLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQ 328 (506)
Q Consensus 250 ~~~~~l~ns~~~le~~~~~~~p~v~~VG-pl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~ 328 (506)
.+|.+++--+++-++. ....-++.||| |+....... ..+.+..+.+ -.+++++|-+--||-.+--...+.
T Consensus 133 ~~D~ll~ifPFE~~~y-~~~g~~~~~VGHPl~d~~~~~-------~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP 203 (373)
T PF02684_consen 133 YVDHLLVIFPFEPEFY-KKHGVPVTYVGHPLLDEVKPE-------PDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLP 203 (373)
T ss_pred HHhheeECCcccHHHH-hccCCCeEEECCcchhhhccC-------CCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHH
Confidence 5677777777776665 55556799999 555443322 1222222333 224567999999985321122334
Q ss_pred HHHHHHhh-----CCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEE-eccchhhhhcCCCcceEEeccCchhHHHHH
Q 010617 329 ELALGLEL-----CKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMI-SWAPQLRVLNHPSIACFLSHCGWNSTMEGV 402 (506)
Q Consensus 329 ~~~~al~~-----~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~-~~vpq~~lL~h~~v~~~ItHgG~~sv~eal 402 (506)
.++++.+. .+.++++...... ...+-.........++.+. ..-.-.++|..+++ .+.-.|. .+.|+.
T Consensus 204 ~~l~aa~~l~~~~p~l~fvvp~a~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SGT-aTLE~A 276 (373)
T PF02684_consen 204 IFLEAAKLLKKQRPDLQFVVPVAPEV----HEELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASGT-ATLEAA 276 (373)
T ss_pred HHHHHHHHHHHhCCCeEEEEecCCHH----HHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCCH-HHHHHH
Confidence 44554422 3445665553321 0000001111122333333 22245567877776 6666664 578999
Q ss_pred HcCCcEEecc-CcccchhhHHhhhcccee--------eeEeecC-CCCCcCHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 010617 403 SNGIPFLCWP-YFGDQFLNERYICDFWKV--------GLKFDRD-EGGIITREEIKNKVDQVLGNQDFKARALELKEKAM 472 (506)
Q Consensus 403 ~~GvP~v~~P-~~~DQ~~na~rv~~~lG~--------G~~l~~~-~~~~~~~~~l~~ai~~vl~d~~~r~~a~~l~~~~~ 472 (506)
..|+|||++= ...=-+..|+++.+ ... |..+-++ =.+..|++.|.+++.+++.|++.++..+...++++
T Consensus 277 l~g~P~Vv~Yk~~~lt~~iak~lvk-~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~ 355 (373)
T PF02684_consen 277 LLGVPMVVAYKVSPLTYFIAKRLVK-VKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENPEKRKKQKELFREIR 355 (373)
T ss_pred HhCCCEEEEEcCcHHHHHHHHHhhc-CCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 9999998853 33334445666644 232 1111110 02568999999999999999987887777777777
Q ss_pred hhhhcCCChHH
Q 010617 473 SSVREGGSSYK 483 (506)
Q Consensus 473 ~~~~~gg~~~~ 483 (506)
+..+.|.++.+
T Consensus 356 ~~~~~~~~~~~ 366 (373)
T PF02684_consen 356 QLLGPGASSRA 366 (373)
T ss_pred HhhhhccCCHH
Confidence 76666666533
No 92
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.38 E-value=7.3e-06 Score=82.26 Aligned_cols=147 Identities=10% Similarity=0.038 Sum_probs=87.3
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhhCCCC-EEEEEcCCCCCCCCCCCChhhHHhhcC--CeEEEeccchhhhhcCCC
Q 010617 309 SSVVYVSFGSFTILDQVQFQELALGLELCKRP-FLWVVRPDITTDANDRYPEGFQERVAA--RGQMISWAPQLRVLNHPS 385 (506)
Q Consensus 309 ~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~lp~~~~~~~~~--n~~v~~~vpq~~lL~h~~ 385 (506)
+++|.+--||-..--...+..++++......+ ..+.+... ... +.+.+.... ...+.+ .-.++++.++
T Consensus 167 ~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a------~~~-~~i~~~~~~~~~~~~~~--~~~~~m~~aD 237 (347)
T PRK14089 167 EGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSF------FKG-KDLKEIYGDISEFEISY--DTHKALLEAE 237 (347)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCC------CcH-HHHHHHHhcCCCcEEec--cHHHHHHhhh
Confidence 35888888886432234455455555433322 22222222 001 222222211 222332 3357887777
Q ss_pred cceEEeccCchhHHHHHHcCCcEEeccC--cccchhhHHhhh---ccceeeeEee---------cC-CCCCcCHHHHHHH
Q 010617 386 IACFLSHCGWNSTMEGVSNGIPFLCWPY--FGDQFLNERYIC---DFWKVGLKFD---------RD-EGGIITREEIKNK 450 (506)
Q Consensus 386 v~~~ItHgG~~sv~eal~~GvP~v~~P~--~~DQ~~na~rv~---~~lG~G~~l~---------~~-~~~~~~~~~l~~a 450 (506)
+ +|+-+|..|+ |+...|+|+|+ ++ ..-|+.||+++. . .|+.-.+- ++ -.++.|++.|.++
T Consensus 238 l--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~-igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~ 312 (347)
T PRK14089 238 F--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKH-IGLANIFFDFLGKEPLHPELLQEFVTVENLLKA 312 (347)
T ss_pred H--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCe-eehHHHhcCCCcccccCchhhcccCCHHHHHHH
Confidence 7 9999999999 99999999988 43 457899999998 5 36654441 00 0256899999999
Q ss_pred HHHHhCChHHHHHHHHHHHHHHhh
Q 010617 451 VDQVLGNQDFKARALELKEKAMSS 474 (506)
Q Consensus 451 i~~vl~d~~~r~~a~~l~~~~~~~ 474 (506)
+.+ . .+++.++..+++++.
T Consensus 313 i~~-~----~~~~~~~~~~~l~~~ 331 (347)
T PRK14089 313 YKE-M----DREKFFKKSKELREY 331 (347)
T ss_pred HHH-H----HHHHHHHHHHHHHHH
Confidence 988 2 344555555555543
No 93
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.32 E-value=0.00048 Score=70.41 Aligned_cols=110 Identities=17% Similarity=0.231 Sum_probs=66.4
Q ss_pred cCCeEEEecc--chh---hhhcCCCcceEEecc---C-chhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeec
Q 010617 366 AARGQMISWA--PQL---RVLNHPSIACFLSHC---G-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDR 436 (506)
Q Consensus 366 ~~n~~v~~~v--pq~---~lL~h~~v~~~ItHg---G-~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~ 436 (506)
.+++.+.++. ++. ++++.+++ |+.-. | -.++.||+++|+|+|+-...+ ....+... ..|...+
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~~-~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIEDG-ETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhcccC-CceEEeC-
Confidence 3567777776 443 46766666 77543 2 359999999999999866432 23344442 5566543
Q ss_pred CCCCCcCHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 010617 437 DEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWV 492 (506)
Q Consensus 437 ~~~~~~~~~~l~~ai~~vl~d~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~ 492 (506)
+.++++.+|.+++.|++.+++..+-+.+.. .+.-+-...++++++-+
T Consensus 323 ------~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~---~~~~s~~~~~~~~~~~~ 369 (372)
T cd03792 323 ------TVEEAAVRILYLLRDPELRRKMGANAREHV---RENFLITRHLKDYLYLI 369 (372)
T ss_pred ------CcHHHHHHHHHHHcCHHHHHHHHHHHHHHH---HHHcCHHHHHHHHHHHH
Confidence 356788899999988766554433333321 12234345555555444
No 94
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.32 E-value=0.00011 Score=74.87 Aligned_cols=132 Identities=17% Similarity=0.190 Sum_probs=80.2
Q ss_pred CceEEEEeCccc--c-CCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhh--cCCeEEEeccc---hhhh
Q 010617 309 SSVVYVSFGSFT--I-LDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERV--AARGQMISWAP---QLRV 380 (506)
Q Consensus 309 ~~vV~vs~GS~~--~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~--~~n~~v~~~vp---q~~l 380 (506)
++.|+|++=-.. . ...+.+..+++++...+.++++++.... . ....+.+.+.+.. .+|+.+.+-++ ...+
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~-p-~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~L 278 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNAD-A-GSRIINEAIEEYVNEHPNFRLFKSLGQERYLSL 278 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCC-C-CchHHHHHHHHHhcCCCCEEEECCCChHHHHHH
Confidence 468888775432 2 3467899999999888766666664331 0 0001111122211 35788875544 5567
Q ss_pred hcCCCcceEEeccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeE-eecCCCCCcCHHHHHHHHHHHhCChH
Q 010617 381 LNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLK-FDRDEGGIITREEIKNKVDQVLGNQD 459 (506)
Q Consensus 381 L~h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~-l~~~~~~~~~~~~l~~ai~~vl~d~~ 459 (506)
++++++ +|+.++.+- .||.+.|+|+|.+- +-+ ...+. |..+. +. .++++|.+++.+++ ++.
T Consensus 279 l~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~----e~~~~-g~nvl~vg------~~~~~I~~a~~~~~-~~~ 340 (365)
T TIGR03568 279 LKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ----KGRLR-ADSVIDVD------PDKEEIVKAIEKLL-DPA 340 (365)
T ss_pred HHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc----hhhhh-cCeEEEeC------CCHHHHHHHHHHHh-ChH
Confidence 878777 998875554 99999999999764 211 11121 43333 32 37899999999965 444
Q ss_pred H
Q 010617 460 F 460 (506)
Q Consensus 460 ~ 460 (506)
+
T Consensus 341 ~ 341 (365)
T TIGR03568 341 F 341 (365)
T ss_pred H
Confidence 3
No 95
>PLN02501 digalactosyldiacylglycerol synthase
Probab=98.29 E-value=0.00031 Score=75.16 Aligned_cols=79 Identities=16% Similarity=0.130 Sum_probs=53.5
Q ss_pred CeEEEeccchh-hhhcCCCcceEEec---cC-chhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCc
Q 010617 368 RGQMISWAPQL-RVLNHPSIACFLSH---CG-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGII 442 (506)
Q Consensus 368 n~~v~~~vpq~-~lL~h~~v~~~ItH---gG-~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~ 442 (506)
++.+.++.++. ++++..++ ||.- =| -.++.||+++|+|+|+.-..+... +.. |.+..+. -
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~--g~nGll~------~ 666 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRS--FPNCLTY------K 666 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eee--cCCeEec------C
Confidence 35556777755 48877776 7763 23 368999999999999876654221 222 3333332 2
Q ss_pred CHHHHHHHHHHHhCChHHH
Q 010617 443 TREEIKNKVDQVLGNQDFK 461 (506)
Q Consensus 443 ~~~~l~~ai~~vl~d~~~r 461 (506)
+.+++.++|.+++.|+.-+
T Consensus 667 D~EafAeAI~~LLsd~~~r 685 (794)
T PLN02501 667 TSEDFVAKVKEALANEPQP 685 (794)
T ss_pred CHHHHHHHHHHHHhCchhh
Confidence 6899999999999887533
No 96
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.28 E-value=0.00067 Score=70.61 Aligned_cols=80 Identities=19% Similarity=0.164 Sum_probs=54.6
Q ss_pred cCCeEEEeccchhh---hhcCCCcceEEecc---Cc-hhHHHHHHcCCcEEeccCcccchhhHHhhh---ccceeeeEee
Q 010617 366 AARGQMISWAPQLR---VLNHPSIACFLSHC---GW-NSTMEGVSNGIPFLCWPYFGDQFLNERYIC---DFWKVGLKFD 435 (506)
Q Consensus 366 ~~n~~v~~~vpq~~---lL~h~~v~~~ItHg---G~-~sv~eal~~GvP~v~~P~~~DQ~~na~rv~---~~lG~G~~l~ 435 (506)
.+++.+.+++|+.+ +|+.+++ +|+-. |. -++.||+++|+|+|+.-..+.- ...++ .. +.|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv~~~~~g-~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIVVPWDGG-PTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hheeeccCCC-CceEEe-
Confidence 47888999998774 6666666 55421 22 4889999999999976543311 11222 32 467654
Q ss_pred cCCCCCcCHHHHHHHHHHHhCCh
Q 010617 436 RDEGGIITREEIKNKVDQVLGNQ 458 (506)
Q Consensus 436 ~~~~~~~~~~~l~~ai~~vl~d~ 458 (506)
. ++++++++|.++++++
T Consensus 377 ----~--d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 ----S--TAEEYAEAIEKILSLS 393 (419)
T ss_pred ----C--CHHHHHHHHHHHHhCC
Confidence 1 7899999999999865
No 97
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.25 E-value=0.00034 Score=72.20 Aligned_cols=84 Identities=12% Similarity=0.110 Sum_probs=59.8
Q ss_pred cCCeEEEeccchh-hhhcCCCcceEE--ec--cCc-hhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCC
Q 010617 366 AARGQMISWAPQL-RVLNHPSIACFL--SH--CGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEG 439 (506)
Q Consensus 366 ~~n~~v~~~vpq~-~lL~h~~v~~~I--tH--gG~-~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~ 439 (506)
.+++.+.+++++. .+++.+++ +| ++ .|. +.+.||+++|+|+|+.+...+.. ... -|.|..+.
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~-~~~g~lv~---- 346 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DAL-PGAELLVA---- 346 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----ccc-CCcceEeC----
Confidence 3678888999854 57777777 55 32 455 47999999999999988643321 122 25676663
Q ss_pred CCcCHHHHHHHHHHHhCChHHHHH
Q 010617 440 GIITREEIKNKVDQVLGNQDFKAR 463 (506)
Q Consensus 440 ~~~~~~~l~~ai~~vl~d~~~r~~ 463 (506)
-++++++++|.+++.|+..+++
T Consensus 347 --~~~~~la~ai~~ll~~~~~~~~ 368 (397)
T TIGR03087 347 --ADPADFAAAILALLANPAEREE 368 (397)
T ss_pred --CCHHHHHHHHHHHHcCHHHHHH
Confidence 3789999999999998765444
No 98
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.22 E-value=7.8e-05 Score=75.43 Aligned_cols=135 Identities=11% Similarity=0.134 Sum_probs=88.8
Q ss_pred EEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEeccchh---hhhcCCCcce
Q 010617 312 VYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQL---RVLNHPSIAC 388 (506)
Q Consensus 312 V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~vpq~---~lL~h~~v~~ 388 (506)
.++..|... .......++++++..+.+++++-.+. ..+.+.+...+|+.+.+++|+. ++++.+++-+
T Consensus 197 ~il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG~g~--------~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v 266 (351)
T cd03804 197 YYLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIGDGP--------ELDRLRAKAGPNVTFLGRVSDEELRDLYARARAFL 266 (351)
T ss_pred EEEEEEcCc--cccChHHHHHHHHHCCCcEEEEECCh--------hHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCEEE
Confidence 455567653 22346667788877777766655432 1133334557899999999985 4677777733
Q ss_pred EEeccCc-hhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCCh-HHHHHHHH
Q 010617 389 FLSHCGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ-DFKARALE 466 (506)
Q Consensus 389 ~ItHgG~-~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~-~~r~~a~~ 466 (506)
+-+.-|. .++.||+++|+|+|+....+ ....+++. +.|..++. -+.++++++|.++++|+ ..++++++
T Consensus 267 ~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~-----~~~~~la~~i~~l~~~~~~~~~~~~~ 336 (351)
T cd03804 267 FPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEE-----QTVESLAAAVERFEKNEDFDPQAIRA 336 (351)
T ss_pred ECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCC-----CCHHHHHHHHHHHHhCcccCHHHHHH
Confidence 3234444 46789999999999976543 33345553 67888754 36899999999999887 34444333
No 99
>PLN02949 transferase, transferring glycosyl groups
Probab=98.20 E-value=0.0035 Score=65.89 Aligned_cols=113 Identities=15% Similarity=0.095 Sum_probs=64.9
Q ss_pred cCCeEEEeccchhh---hhcCCCcceEEe---ccCch-hHHHHHHcCCcEEeccCcccchhhHHhhhcc-ce-eeeEeec
Q 010617 366 AARGQMISWAPQLR---VLNHPSIACFLS---HCGWN-STMEGVSNGIPFLCWPYFGDQFLNERYICDF-WK-VGLKFDR 436 (506)
Q Consensus 366 ~~n~~v~~~vpq~~---lL~h~~v~~~It---HgG~~-sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~-lG-~G~~l~~ 436 (506)
.+++.+.+++|+.+ +|+.+++ +|+ +-|+| ++.||+++|+|+|+....+--. ..+.+. -| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~---eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKM---DIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcc---eeeecCCCCcccccC--
Confidence 57888999998664 5766666 663 23443 7999999999999977543100 011110 01 23332
Q ss_pred CCCCCcCHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHh
Q 010617 437 DEGGIITREEIKNKVDQVLGN-QDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKT 494 (506)
Q Consensus 437 ~~~~~~~~~~l~~ai~~vl~d-~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~ 494 (506)
. +.++++++|.+++++ ++.++ +|++..++.+++ -+...-.+++.+.+.+
T Consensus 407 ---~--~~~~la~ai~~ll~~~~~~r~---~m~~~ar~~~~~-FS~e~~~~~~~~~i~~ 456 (463)
T PLN02949 407 ---T--TVEEYADAILEVLRMRETERL---EIAAAARKRANR-FSEQRFNEDFKDAIRP 456 (463)
T ss_pred ---C--CHHHHHHHHHHHHhCCHHHHH---HHHHHHHHHHHH-cCHHHHHHHHHHHHHH
Confidence 1 789999999999984 44332 233333332212 3434444555444443
No 100
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.19 E-value=0.00046 Score=68.76 Aligned_cols=160 Identities=15% Similarity=0.148 Sum_probs=99.7
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHH----hhCCCCEEEEEcCCCCCCCCCCCChhhHHhhc--CCeEEE---eccchhh
Q 010617 309 SSVVYVSFGSFTILDQVQFQELALGL----ELCKRPFLWVVRPDITTDANDRYPEGFQERVA--ARGQMI---SWAPQLR 379 (506)
Q Consensus 309 ~~vV~vs~GS~~~~~~~~~~~~~~al----~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~--~n~~v~---~~vpq~~ 379 (506)
+..+.+++=-..+.. +-++.+.+++ +.. ..+.+++..+.. ..+.+-..+++. .|+++. +|.+...
T Consensus 204 ~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~-~~~~viyp~H~~----~~v~e~~~~~L~~~~~v~li~pl~~~~f~~ 277 (383)
T COG0381 204 KKYILVTAHRRENVG-EPLEEICEALREIAEEY-PDVIVIYPVHPR----PRVRELVLKRLKNVERVKLIDPLGYLDFHN 277 (383)
T ss_pred CcEEEEEcchhhccc-ccHHHHHHHHHHHHHhC-CCceEEEeCCCC----hhhhHHHHHHhCCCCcEEEeCCcchHHHHH
Confidence 448888765433333 4455555544 334 334444543310 011111123333 457765 7888889
Q ss_pred hhcCCCcceEEeccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCChH
Q 010617 380 VLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQD 459 (506)
Q Consensus 380 lL~h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~~ 459 (506)
++.++.+ ++|-.|. -.=||...|+|.+++=..-|+++ ++ ++ |.-..+. .+.+.|.+++.+++.+++
T Consensus 278 L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE---~v-~a-gt~~lvg------~~~~~i~~~~~~ll~~~~ 343 (383)
T COG0381 278 LMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPE---GV-EA-GTNILVG------TDEENILDAATELLEDEE 343 (383)
T ss_pred HHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCcc---ce-ec-CceEEeC------ccHHHHHHHHHHHhhChH
Confidence 9988877 9988774 46789999999999999999997 34 32 6666664 367999999999999988
Q ss_pred HHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHH
Q 010617 460 FKARALELKEKAMSSVREGGSSYKTFQNFLQWVK 493 (506)
Q Consensus 460 ~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 493 (506)
..++......-.-+ |.+.+.+.+.+.+..
T Consensus 344 ~~~~m~~~~npYgd-----g~as~rIv~~l~~~~ 372 (383)
T COG0381 344 FYERMSNAKNPYGD-----GNASERIVEILLNYF 372 (383)
T ss_pred HHHHHhcccCCCcC-----cchHHHHHHHHHHHh
Confidence 77765555444432 334444555444443
No 101
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.18 E-value=8.8e-06 Score=82.13 Aligned_cols=210 Identities=15% Similarity=0.150 Sum_probs=104.9
Q ss_pred cccEEEEcCccccccccccc--CCceeeecccccCCCCCCCCCCCccccchh-hhhhhcCCCCceEEEEeCccccCC-H-
Q 010617 250 AVNFHFCNSTYELESEAFTT--FPELLPIGPLLASNRLGNTAGYFWCEDSNC-LKWLDQQQPSSVVYVSFGSFTILD-Q- 324 (506)
Q Consensus 250 ~~~~~l~ns~~~le~~~~~~--~p~v~~VGpl~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~~~vV~vs~GS~~~~~-~- 324 (506)
-+++.++.+...-+.-...- +.+++.||....+.-.... -...+++ ..-+....+++.|++++=...... +
T Consensus 122 la~lhf~~t~~~~~~L~~~G~~~~rI~~vG~~~~D~l~~~~----~~~~~~~~~~~i~~~~~~~~iLvt~H~~t~~~~~~ 197 (346)
T PF02350_consen 122 LAHLHFAPTEEARERLLQEGEPPERIFVVGNPGIDALLQNK----EEIEEKYKNSGILQDAPKPYILVTLHPVTNEDNPE 197 (346)
T ss_dssp H-SEEEESSHHHHHHHHHTT--GGGEEE---HHHHHHHHHH----HTTCC-HHHHHHHHCTTSEEEEEE-S-CCCCTHH-
T ss_pred hhhhhccCCHHHHHHHHhcCCCCCeEEEEChHHHHHHHHhH----HHHhhhhhhHHHHhccCCCEEEEEeCcchhcCChH
Confidence 45666666655433221111 3477778865544221100 0001111 111222255779999885554444 3
Q ss_pred --HHHHHHHHHHhhC-CCCEEEEEcCCCCCCCCCCCChhhHHhhc--CCeEEEeccc---hhhhhcCCCcceEEeccCch
Q 010617 325 --VQFQELALGLELC-KRPFLWVVRPDITTDANDRYPEGFQERVA--ARGQMISWAP---QLRVLNHPSIACFLSHCGWN 396 (506)
Q Consensus 325 --~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~lp~~~~~~~~--~n~~v~~~vp---q~~lL~h~~v~~~ItHgG~~ 396 (506)
..+..+++++... +.++||.+.+.+ .....+.++.. +|+.+..-++ ...+|+++++ +|+..|
T Consensus 198 ~~~~i~~~l~~L~~~~~~~vi~~~hn~p------~~~~~i~~~l~~~~~v~~~~~l~~~~~l~ll~~a~~--vvgdSs-- 267 (346)
T PF02350_consen 198 RLEQILEALKALAERQNVPVIFPLHNNP------RGSDIIIEKLKKYDNVRLIEPLGYEEYLSLLKNADL--VVGDSS-- 267 (346)
T ss_dssp -HHHHHHHHHHHHHHTTEEEEEE--S-H------HHHHHHHHHHTT-TTEEEE----HHHHHHHHHHESE--EEESSH--
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEecCCc------hHHHHHHHHhcccCCEEEECCCCHHHHHHHHhcceE--EEEcCc--
Confidence 4455566666555 778999987541 11122222222 5888875554 5578878777 999999
Q ss_pred hHH-HHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhh
Q 010617 397 STM-EGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSV 475 (506)
Q Consensus 397 sv~-eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~~~r~~a~~l~~~~~~~~ 475 (506)
+++ ||.+.|+|.|.+=...+.+.- + . .|..+.+. .+.++|.+++.+++++..+.++......-+
T Consensus 268 GI~eEa~~lg~P~v~iR~~geRqe~---r-~-~~~nvlv~------~~~~~I~~ai~~~l~~~~~~~~~~~~~npY---- 332 (346)
T PF02350_consen 268 GIQEEAPSLGKPVVNIRDSGERQEG---R-E-RGSNVLVG------TDPEAIIQAIEKALSDKDFYRKLKNRPNPY---- 332 (346)
T ss_dssp HHHHHGGGGT--EEECSSS-S-HHH---H-H-TTSEEEET------SSHHHHHHHHHHHHH-HHHHHHHHCS--TT----
T ss_pred cHHHHHHHhCCeEEEecCCCCCHHH---H-h-hcceEEeC------CCHHHHHHHHHHHHhChHHHHhhccCCCCC----
Confidence 666 999999999999433333322 1 2 15555542 489999999999998744444433322222
Q ss_pred hcCCChHHHHHHHH
Q 010617 476 REGGSSYKTFQNFL 489 (506)
Q Consensus 476 ~~gg~~~~~~~~~~ 489 (506)
.+|.+.+.+.+++
T Consensus 333 -gdG~as~rI~~~L 345 (346)
T PF02350_consen 333 -GDGNASERIVEIL 345 (346)
T ss_dssp --SS-HHHHHHHHH
T ss_pred -CCCcHHHHHHHhh
Confidence 2455556555554
No 102
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.14 E-value=1.1e-05 Score=68.57 Aligned_cols=117 Identities=14% Similarity=0.148 Sum_probs=77.3
Q ss_pred ceEEEEeCccccC---CHHHHHHHHHHHhhCCC-CEEEEEcCCCCCCCCCCCChhhHH-hhcCCeEE--Eeccch-hhhh
Q 010617 310 SVVYVSFGSFTIL---DQVQFQELALGLELCKR-PFLWVVRPDITTDANDRYPEGFQE-RVAARGQM--ISWAPQ-LRVL 381 (506)
Q Consensus 310 ~vV~vs~GS~~~~---~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~lp~~~~~-~~~~n~~v--~~~vpq-~~lL 381 (506)
-.|||+.||..-. ..-.-+...+.+.+.|+ +.|+.++.... -.++.... +..+...+ .+|-|- .+..
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~-----~~~d~~~~~~k~~gl~id~y~f~psl~e~I 78 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQP-----FFGDPIDLIRKNGGLTIDGYDFSPSLTEDI 78 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCcc-----CCCCHHHhhcccCCeEEEEEecCccHHHHH
Confidence 3899999986421 11223446677777886 67777776510 11111111 11233333 377775 5566
Q ss_pred cCCCcceEEeccCchhHHHHHHcCCcEEeccC----cccchhhHHhhhccceeeeEe
Q 010617 382 NHPSIACFLSHCGWNSTMEGVSNGIPFLCWPY----FGDQFLNERYICDFWKVGLKF 434 (506)
Q Consensus 382 ~h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~----~~DQ~~na~rv~~~lG~G~~l 434 (506)
+.+++ +|+|+|.||++|.|..|+|.++++- -..|-+-|..+++. |.=..=
T Consensus 79 ~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gyL~~C 132 (170)
T KOG3349|consen 79 RSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GYLYYC 132 (170)
T ss_pred hhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-CcEEEe
Confidence 55666 9999999999999999999999994 35899999999884 654444
No 103
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.12 E-value=0.011 Score=64.79 Aligned_cols=92 Identities=15% Similarity=0.207 Sum_probs=62.4
Q ss_pred cCCeEEEeccchh-hhhcCCCcceEEe---ccCc-hhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCC
Q 010617 366 AARGQMISWAPQL-RVLNHPSIACFLS---HCGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGG 440 (506)
Q Consensus 366 ~~n~~v~~~vpq~-~lL~h~~v~~~It---HgG~-~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~ 440 (506)
.+++.+.+|.++. .+++.+++ ||. +.|+ +++.||+++|+|+|+....+ ....|.+. ..|..++. +
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG----~~EiV~dg-~~GlLv~~---~ 642 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAGG----AGEAVQEG-VTGLTLPA---D 642 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCCC----hHHHccCC-CCEEEeCC---C
Confidence 4778888887653 57777777 654 4564 79999999999999876532 44556552 46888865 4
Q ss_pred CcCHHHHHHHHHHHhC----ChHHHHHHHHH
Q 010617 441 IITREEIKNKVDQVLG----NQDFKARALEL 467 (506)
Q Consensus 441 ~~~~~~l~~ai~~vl~----d~~~r~~a~~l 467 (506)
+.+.+++.+++.+++. ++.+++++++.
T Consensus 643 d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~ 673 (694)
T PRK15179 643 TVTAPDVAEALARIHDMCAADPGIARKAADW 673 (694)
T ss_pred CCChHHHHHHHHHHHhChhccHHHHHHHHHH
Confidence 4566677777766554 55666655443
No 104
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.08 E-value=0.00052 Score=68.21 Aligned_cols=221 Identities=14% Similarity=0.049 Sum_probs=115.4
Q ss_pred ccccEEEEcCcccccccccccCCceeeec-ccccCCCCCCCCCCCccccchhhhhhhcCCCCceEEEEeCccccCCHHHH
Q 010617 249 IAVNFHFCNSTYELESEAFTTFPELLPIG-PLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQF 327 (506)
Q Consensus 249 ~~~~~~l~ns~~~le~~~~~~~p~v~~VG-pl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~ 327 (506)
..+|.+++--+++-++...--.| ..||| |+...... .+..+.+.+-+.-..++.++.+-.||-.+--...+
T Consensus 135 ~~~D~lLailPFE~~~y~k~g~~-~~yVGHpl~d~i~~-------~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~ 206 (381)
T COG0763 135 KYVDHLLAILPFEPAFYDKFGLP-CTYVGHPLADEIPL-------LPDREAAREKLGIDADEKTLALLPGSRRSEIRRLL 206 (381)
T ss_pred HHhhHeeeecCCCHHHHHhcCCC-eEEeCChhhhhccc-------cccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHH
Confidence 45677777666665554233234 88999 44444322 12333344445444456699999998633222333
Q ss_pred HHHHHHHhh-----CCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCe-EEEecc-chh--hhhcCCCcceEEeccCchhH
Q 010617 328 QELALGLEL-----CKRPFLWVVRPDITTDANDRYPEGFQERVAARG-QMISWA-PQL--RVLNHPSIACFLSHCGWNST 398 (506)
Q Consensus 328 ~~~~~al~~-----~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~-~v~~~v-pq~--~lL~h~~v~~~ItHgG~~sv 398 (506)
..+.++.++ .+.++++.+.+. ..+.+-... ...+. ...-++ ++. +.+..+++ .+.-+|. -+
T Consensus 207 ~~f~~a~~~l~~~~~~~~~vlp~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT-~t 276 (381)
T COG0763 207 PPFVQAAQELKARYPDLKFVLPLVNA----KYRRIIEEA---LKWEVAGLSLILIDGEKRKAFAAADA--ALAASGT-AT 276 (381)
T ss_pred HHHHHHHHHHHhhCCCceEEEecCcH----HHHHHHHHH---hhccccCceEEecCchHHHHHHHhhH--HHHhccH-HH
Confidence 444444433 346777666544 111111111 11111 122222 211 35655555 6666665 46
Q ss_pred HHHHHcCCcEEecc-CcccchhhHHhhhccceeeeEeec--C-----C--CCCcCHHHHHHHHHHHhCCh----HHHHHH
Q 010617 399 MEGVSNGIPFLCWP-YFGDQFLNERYICDFWKVGLKFDR--D-----E--GGIITREEIKNKVDQVLGNQ----DFKARA 464 (506)
Q Consensus 399 ~eal~~GvP~v~~P-~~~DQ~~na~rv~~~lG~G~~l~~--~-----~--~~~~~~~~l~~ai~~vl~d~----~~r~~a 464 (506)
.|+..+|+|||+.= ...=-+..|.+... +...-..+. + | .+..+++.|.+++.+++.|. .+++..
T Consensus 277 LE~aL~g~P~Vv~Yk~~~it~~iak~lvk-~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~ 355 (381)
T COG0763 277 LEAALAGTPMVVAYKVKPITYFIAKRLVK-LPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKF 355 (381)
T ss_pred HHHHHhCCCEEEEEeccHHHHHHHHHhcc-CCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHH
Confidence 79999999999742 11112234444443 232211111 0 0 24578999999999999988 344444
Q ss_pred HHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 010617 465 LELKEKAMSSVREGGSSYKTFQNFLQWV 492 (506)
Q Consensus 465 ~~l~~~~~~~~~~gg~~~~~~~~~~~~~ 492 (506)
.+|.+.++ +++++....+.+++.+
T Consensus 356 ~~l~~~l~----~~~~~e~aA~~vl~~~ 379 (381)
T COG0763 356 RELHQYLR----EDPASEIAAQAVLELL 379 (381)
T ss_pred HHHHHHHc----CCcHHHHHHHHHHHHh
Confidence 44444444 4656666666555543
No 105
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.07 E-value=0.0011 Score=70.03 Aligned_cols=132 Identities=14% Similarity=0.161 Sum_probs=73.3
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHH---hhCCCCEEEEEcCCCCCCCCCCCChh---hHHhhcCCeEE-Eeccchh--h
Q 010617 309 SSVVYVSFGSFTILDQVQFQELALGL---ELCKRPFLWVVRPDITTDANDRYPEG---FQERVAARGQM-ISWAPQL--R 379 (506)
Q Consensus 309 ~~vV~vs~GS~~~~~~~~~~~~~~al---~~~~~~~i~~~~~~~~~~~~~~lp~~---~~~~~~~n~~v-~~~vpq~--~ 379 (506)
+..+++..|.... ..-+..+++|+ ...+.++++.-.++ ..+.+. +.++.+.++.+ .+|-... .
T Consensus 281 ~~~~i~~vGRl~~--~KG~~~li~a~~~l~~~~~~lvivG~g~------~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~ 352 (466)
T PRK00654 281 DAPLFAMVSRLTE--QKGLDLVLEALPELLEQGGQLVLLGTGD------PELEEAFRALAARYPGKVGVQIGYDEALAHR 352 (466)
T ss_pred CCcEEEEeecccc--ccChHHHHHHHHHHHhcCCEEEEEecCc------HHHHHHHHHHHHHCCCcEEEEEeCCHHHHHH
Confidence 3456667776532 22233344444 23366776664322 111112 22334556654 3663222 5
Q ss_pred hhcCCCcceEEec---cCc-hhHHHHHHcCCcEEeccCcc--cchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHH
Q 010617 380 VLNHPSIACFLSH---CGW-NSTMEGVSNGIPFLCWPYFG--DQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQ 453 (506)
Q Consensus 380 lL~h~~v~~~ItH---gG~-~sv~eal~~GvP~v~~P~~~--DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~ 453 (506)
+++.+++ +|.- -|. .+++||+++|+|.|+.-..+ |...+...-.+. +.|..++. -++++|.++|.+
T Consensus 353 ~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~-----~d~~~la~~i~~ 424 (466)
T PRK00654 353 IYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFDD-----FNAEDLLRALRR 424 (466)
T ss_pred HHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeCC-----CCHHHHHHHHHH
Confidence 6777777 6643 344 48999999999999865432 322111111232 67888854 478999999999
Q ss_pred HhC
Q 010617 454 VLG 456 (506)
Q Consensus 454 vl~ 456 (506)
++.
T Consensus 425 ~l~ 427 (466)
T PRK00654 425 ALE 427 (466)
T ss_pred HHH
Confidence 885
No 106
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.05 E-value=0.002 Score=68.27 Aligned_cols=150 Identities=14% Similarity=0.087 Sum_probs=79.3
Q ss_pred CceEEEEeCcccc-CCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhH---HhhcCCeEEEeccchh---hhh
Q 010617 309 SSVVYVSFGSFTI-LDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQ---ERVAARGQMISWAPQL---RVL 381 (506)
Q Consensus 309 ~~vV~vs~GS~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~---~~~~~n~~v~~~vpq~---~lL 381 (506)
+..+++..|.... ...+.+...+..+.+.+.++++.-.++ ..+.+.+. ++..+|+.+....++. .++
T Consensus 295 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 368 (476)
T cd03791 295 DAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGD------PEYEEALRELAARYPGRVAVLIGYDEALAHLIY 368 (476)
T ss_pred CCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCC------HHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Confidence 3456777776542 123333333333444455665554332 11112222 2234677765333333 466
Q ss_pred cCCCcceEEec---cCc-hhHHHHHHcCCcEEeccCcc--cchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHh
Q 010617 382 NHPSIACFLSH---CGW-NSTMEGVSNGIPFLCWPYFG--DQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVL 455 (506)
Q Consensus 382 ~h~~v~~~ItH---gG~-~sv~eal~~GvP~v~~P~~~--DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl 455 (506)
+.+++ ++.- -|. .+.+||+++|+|+|+....+ |-..+...-.+. |.|..++. -+++++.+++.+++
T Consensus 369 ~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~~-----~~~~~l~~~i~~~l 440 (476)
T cd03791 369 AGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFEG-----YNADALLAALRRAL 440 (476)
T ss_pred HhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeCC-----CCHHHHHHHHHHHH
Confidence 66666 6643 122 47899999999999866542 222211111122 57888864 46899999999988
Q ss_pred CChHHHHHHHHHHHHHH
Q 010617 456 GNQDFKARALELKEKAM 472 (506)
Q Consensus 456 ~d~~~r~~a~~l~~~~~ 472 (506)
.+..-++...++++...
T Consensus 441 ~~~~~~~~~~~~~~~~~ 457 (476)
T cd03791 441 ALYRDPEAWRKLQRNAM 457 (476)
T ss_pred HHHcCHHHHHHHHHHHh
Confidence 53211333344444443
No 107
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.04 E-value=0.0029 Score=66.95 Aligned_cols=133 Identities=11% Similarity=0.043 Sum_probs=74.0
Q ss_pred ceEEEEeCcccc-CCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhh---HHhhcCCeEEEeccchh---hhhc
Q 010617 310 SVVYVSFGSFTI-LDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGF---QERVAARGQMISWAPQL---RVLN 382 (506)
Q Consensus 310 ~vV~vs~GS~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~---~~~~~~n~~v~~~vpq~---~lL~ 382 (506)
..+++..|.... ...+.+...+..+.+.+.++++.-.++ ..+.+.+ .++.+.++.+....+.. .+++
T Consensus 291 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~------~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~ 364 (473)
T TIGR02095 291 VPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGD------PELEEALRELAERYPGNVRVIIGYDEALAHLIYA 364 (473)
T ss_pred CCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCC------HHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHH
Confidence 356666776633 223333333333333456665554332 1111222 22345667666555554 4676
Q ss_pred CCCcceEEec---cCc-hhHHHHHHcCCcEEeccCcc--cchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhC
Q 010617 383 HPSIACFLSH---CGW-NSTMEGVSNGIPFLCWPYFG--DQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLG 456 (506)
Q Consensus 383 h~~v~~~ItH---gG~-~sv~eal~~GvP~v~~P~~~--DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~ 456 (506)
.+++ +|.- -|. .+++||+++|+|.|+-...+ |...+...-... +.|..++. -++++++++|.+++.
T Consensus 365 ~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~-~~G~l~~~-----~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 365 GADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAES-GTGFLFEE-----YDPGALLAALSRALR 436 (473)
T ss_pred hCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCC-CceEEeCC-----CCHHHHHHHHHHHHH
Confidence 6676 6643 244 38899999999999866542 322211100121 67887754 478999999999986
No 108
>PLN00142 sucrose synthase
Probab=98.04 E-value=0.0062 Score=67.25 Aligned_cols=87 Identities=15% Similarity=0.195 Sum_probs=54.5
Q ss_pred CCeEEEe----ccchhhhhc----CCCcceEEec---cCc-hhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEe
Q 010617 367 ARGQMIS----WAPQLRVLN----HPSIACFLSH---CGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKF 434 (506)
Q Consensus 367 ~n~~v~~----~vpq~~lL~----h~~v~~~ItH---gG~-~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l 434 (506)
+++.+.+ .++..++.. ..++ ||.- -|+ .++.||+++|+|+|+-...+ ....|++. ..|..+
T Consensus 642 ~~V~flG~~~~~~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATdvGG----~~EIV~dG-~tG~LV 714 (815)
T PLN00142 642 GQFRWIAAQTNRVRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATCQGG----PAEIIVDG-VSGFHI 714 (815)
T ss_pred CcEEEcCCcCCcccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcCC-CcEEEe
Confidence 5666554 333344543 2234 6653 455 48999999999999865543 45566653 568888
Q ss_pred ecCCCCCcCHHHHHHHHHH----HhCChHHHHHHH
Q 010617 435 DRDEGGIITREEIKNKVDQ----VLGNQDFKARAL 465 (506)
Q Consensus 435 ~~~~~~~~~~~~l~~ai~~----vl~d~~~r~~a~ 465 (506)
++ -++++++++|.+ ++.|++.+++..
T Consensus 715 ~P-----~D~eaLA~aI~~lLekLl~Dp~lr~~mg 744 (815)
T PLN00142 715 DP-----YHGDEAANKIADFFEKCKEDPSYWNKIS 744 (815)
T ss_pred CC-----CCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 65 367888888765 456776554433
No 109
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.99 E-value=0.002 Score=65.98 Aligned_cols=181 Identities=13% Similarity=0.085 Sum_probs=93.2
Q ss_pred hhccccEEEEcCcccccccccccCCceeeecccccCCCCCCCCCCCccccchhhhhhhcCCCCceEEEEeCcccc-CCHH
Q 010617 247 AMIAVNFHFCNSTYELESEAFTTFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTI-LDQV 325 (506)
Q Consensus 247 ~~~~~~~~l~ns~~~le~~~~~~~p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~-~~~~ 325 (506)
.++.+|.+++.|....+.- ....+++..|..-......... . ...... ..+... +..+++..|+... .+.+
T Consensus 150 ~~~~ad~vi~~S~~l~~~~-~~~~~~i~~i~ngvd~~~f~~~-~---~~~~~~-~~~~~~--~~~~i~y~G~l~~~~d~~ 221 (373)
T cd04950 150 LLKRADLVFTTSPSLYEAK-RRLNPNVVLVPNGVDYEHFAAA-R---DPPPPP-ADLAAL--PRPVIGYYGAIAEWLDLE 221 (373)
T ss_pred HHHhCCEEEECCHHHHHHH-hhCCCCEEEcccccCHHHhhcc-c---ccCCCh-hHHhcC--CCCEEEEEeccccccCHH
Confidence 4567899888877655443 3334566655433322111000 0 000000 111122 2345666787743 3334
Q ss_pred HHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEeccchhh---hhcCCCcceEE------eccCc-
Q 010617 326 QFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLR---VLNHPSIACFL------SHCGW- 395 (506)
Q Consensus 326 ~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~vpq~~---lL~h~~v~~~I------tHgG~- 395 (506)
.+..+++. ..+.+++++-..+. . .. ...+ ...+|+.+.+++|+.+ .+++.++.++- +.++.
T Consensus 222 ll~~la~~--~p~~~~vliG~~~~---~-~~-~~~~--~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P 292 (373)
T cd04950 222 LLEALAKA--RPDWSFVLIGPVDV---S-ID-PSAL--LRLPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSP 292 (373)
T ss_pred HHHHHHHH--CCCCEEEEECCCcC---c-cC-hhHh--ccCCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCc
Confidence 44444332 34455555443210 0 00 0111 1137899999999775 56777773332 22333
Q ss_pred hhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCCh
Q 010617 396 NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 458 (506)
Q Consensus 396 ~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~ 458 (506)
+.+.|++++|+|+|+.++ ...++. +-|..+.. -+.+++.++|.+++.++
T Consensus 293 ~Kl~EylA~G~PVVat~~-------~~~~~~--~~~~~~~~-----~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 293 LKLFEYLAAGKPVVATPL-------PEVRRY--EDEVVLIA-----DDPEEFVAAIEKALLED 341 (373)
T ss_pred chHHHHhccCCCEEecCc-------HHHHhh--cCcEEEeC-----CCHHHHHHHHHHHHhcC
Confidence 469999999999998763 122222 22333322 27999999999977544
No 110
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.93 E-value=0.00015 Score=74.92 Aligned_cols=145 Identities=15% Similarity=0.140 Sum_probs=82.6
Q ss_pred CCCceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhh------cCCeEEEeccchhhh
Q 010617 307 QPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERV------AARGQMISWAPQLRV 380 (506)
Q Consensus 307 ~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~------~~n~~v~~~vpq~~l 380 (506)
+++.+||.+|.......++.++...+.|++.+...+|....... -...+.++. ++++.+.+..++.+-
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~------~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~eh 355 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPAS------GEARLRRRFAAHGVDPDRIIFSPVAPREEH 355 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTT------HHHHHHHHHHHTTS-GGGEEEEE---HHHH
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHH------HHHHHHHHHHHcCCChhhEEEcCCCCHHHH
Confidence 34569999999999999999999999999999999988764311 112333222 366777788776654
Q ss_pred hc-CCCcceEE---eccCchhHHHHHHcCCcEEeccCcc-cchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHh
Q 010617 381 LN-HPSIACFL---SHCGWNSTMEGVSNGIPFLCWPYFG-DQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVL 455 (506)
Q Consensus 381 L~-h~~v~~~I---tHgG~~sv~eal~~GvP~v~~P~~~-DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl 455 (506)
|. +..+++++ ..+|.+|++|||+.|||+|.+|-.. =...-|..+.. +|+...+-. +.++-.+..-++-
T Consensus 356 l~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~-lGl~ElIA~------s~~eYv~~Av~La 428 (468)
T PF13844_consen 356 LRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRA-LGLPELIAD------SEEEYVEIAVRLA 428 (468)
T ss_dssp HHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHH-HT-GGGB-S------SHHHHHHHHHHHH
T ss_pred HHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHH-cCCchhcCC------CHHHHHHHHHHHh
Confidence 43 22233354 4678899999999999999999432 33334445555 688877653 4555554445555
Q ss_pred CChHHHHHH
Q 010617 456 GNQDFKARA 464 (506)
Q Consensus 456 ~d~~~r~~a 464 (506)
.|.+++++.
T Consensus 429 ~D~~~l~~l 437 (468)
T PF13844_consen 429 TDPERLRAL 437 (468)
T ss_dssp H-HHHHHHH
T ss_pred CCHHHHHHH
Confidence 577655443
No 111
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.76 E-value=0.0091 Score=63.46 Aligned_cols=87 Identities=18% Similarity=0.188 Sum_probs=59.0
Q ss_pred cCCeEEEeccchhhhhcCCCcceEEe---ccCc-hhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCC--C
Q 010617 366 AARGQMISWAPQLRVLNHPSIACFLS---HCGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE--G 439 (506)
Q Consensus 366 ~~n~~v~~~vpq~~lL~h~~v~~~It---HgG~-~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~--~ 439 (506)
.+++.+.++.+..+++..+++ +|. .-|+ .+++||+++|+|+|+.-..+ .+...+++. ..|..++.+. +
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g-~nG~lv~~~~~~~ 448 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDN-KNGYLIPIDEEED 448 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccCC-CCEEEEeCCcccc
Confidence 356777888888899988887 664 3344 68999999999999865431 133445552 4677776311 0
Q ss_pred CCcC-HHHHHHHHHHHhCCh
Q 010617 440 GIIT-REEIKNKVDQVLGNQ 458 (506)
Q Consensus 440 ~~~~-~~~l~~ai~~vl~d~ 458 (506)
..-+ .++|+++|.++++++
T Consensus 449 d~~~~~~~la~~I~~ll~~~ 468 (500)
T TIGR02918 449 DEDQIITALAEKIVEYFNSN 468 (500)
T ss_pred chhHHHHHHHHHHHHHhChH
Confidence 1112 788999999999544
No 112
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.74 E-value=0.0013 Score=68.20 Aligned_cols=112 Identities=18% Similarity=0.208 Sum_probs=73.9
Q ss_pred cCCeEEEeccchhh---hhcCCCcceEEeccC----chhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCC
Q 010617 366 AARGQMISWAPQLR---VLNHPSIACFLSHCG----WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE 438 (506)
Q Consensus 366 ~~n~~v~~~vpq~~---lL~h~~v~~~ItHgG----~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~ 438 (506)
.+++.+.+|+++.+ ++...++.+||...- -++++||+++|+|+|+-...+ ....+.+. +.|..+..
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg----~~e~i~~~-~~G~l~~~-- 360 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGG----TPEIVDNG-GNGLLLSK-- 360 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCC----cHHHhcCC-CcEEEeCC--
Confidence 35677889999875 444444555776543 468999999999999855433 55566652 48888753
Q ss_pred CCCcCHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhcCCChHHHHHHHH
Q 010617 439 GGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFL 489 (506)
Q Consensus 439 ~~~~~~~~l~~ai~~vl~d~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~ 489 (506)
.-+.++++++|.++++|+..++ +|++..++.+.+.-+.....++|+
T Consensus 361 --~~~~~~la~~I~~ll~~~~~~~---~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 361 --DPTPNELVSSLSKFIDNEEEYQ---TMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred --CCCHHHHHHHHHHHHhCHHHHH---HHHHHHHHHHHHHcCHHHhHHHhc
Confidence 3478999999999998875443 344444444434455455555543
No 113
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.69 E-value=0.0035 Score=64.33 Aligned_cols=86 Identities=14% Similarity=0.264 Sum_probs=61.7
Q ss_pred hcCCeEEEeccchhh---hhcCCCcceEEec----cCc-hhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeec
Q 010617 365 VAARGQMISWAPQLR---VLNHPSIACFLSH----CGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDR 436 (506)
Q Consensus 365 ~~~n~~v~~~vpq~~---lL~h~~v~~~ItH----gG~-~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~ 436 (506)
...++.+.+++|+.+ +++.+++ +|.. .|. .++.||+++|+|+|+....+ +...+++. ..|..+.
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg----~~Eiv~~~-~~G~~l~- 326 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG----ITEFVLEG-ITGYHLA- 326 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCCC----cHhhcccC-CceEEEe-
Confidence 456788889998764 5777777 6642 343 57889999999999876533 44455553 5676553
Q ss_pred CCCCCcCHHHHHHHHHHHhCChHHH
Q 010617 437 DEGGIITREEIKNKVDQVLGNQDFK 461 (506)
Q Consensus 437 ~~~~~~~~~~l~~ai~~vl~d~~~r 461 (506)
...+.++++++|.++++|+..+
T Consensus 327 ---~~~d~~~la~~I~~ll~d~~~~ 348 (380)
T PRK15484 327 ---EPMTSDSIISDINRTLADPELT 348 (380)
T ss_pred ---CCCCHHHHHHHHHHHHcCHHHH
Confidence 2247999999999999998653
No 114
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.61 E-value=0.0032 Score=65.26 Aligned_cols=112 Identities=16% Similarity=0.172 Sum_probs=72.5
Q ss_pred cCCeEEEeccchhh---hhcCCCcceEEec---------cCc-hhHHHHHHcCCcEEeccCcccchhhHHhhhccceeee
Q 010617 366 AARGQMISWAPQLR---VLNHPSIACFLSH---------CGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGL 432 (506)
Q Consensus 366 ~~n~~v~~~vpq~~---lL~h~~v~~~ItH---------gG~-~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~ 432 (506)
.+++.+.+|+|+.+ ++..+++ ||.- -|. ++++||+++|+|+|+....+ ....+++. ..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v~~~-~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELVEAD-KSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhhcCC-CceE
Confidence 46788899999875 5666676 6642 344 67899999999999875543 34455552 5677
Q ss_pred EeecCCCCCcCHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 010617 433 KFDRDEGGIITREEIKNKVDQVLG-NQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWV 492 (506)
Q Consensus 433 ~l~~~~~~~~~~~~l~~ai~~vl~-d~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~ 492 (506)
.++. -+.++++++|.+++. |++.+++ +++..++.+.+.-+.....+++.+.+
T Consensus 351 lv~~-----~d~~~la~ai~~l~~~d~~~~~~---~~~~ar~~v~~~f~~~~~~~~l~~~~ 403 (406)
T PRK15427 351 LVPE-----NDAQALAQRLAAFSQLDTDELAP---VVKRAREKVETDFNQQVINRELASLL 403 (406)
T ss_pred EeCC-----CCHHHHHHHHHHHHhCCHHHHHH---HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 7754 379999999999998 8754433 33333332223344445555555444
No 115
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.00097 Score=55.91 Aligned_cols=109 Identities=15% Similarity=0.115 Sum_probs=69.8
Q ss_pred EEEEeCccccCCHHHHHH--HHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEec--cc-hhhhhcCCCc
Q 010617 312 VYVSFGSFTILDQVQFQE--LALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISW--AP-QLRVLNHPSI 386 (506)
Q Consensus 312 V~vs~GS~~~~~~~~~~~--~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~--vp-q~~lL~h~~v 386 (506)
+||+.||....-...+.. +.+-.+....++|+.+++. ...|- .+ .++.+| -+ -+.+...+++
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~------d~kpv------ag-l~v~~F~~~~kiQsli~darI 68 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNG------DIKPV------AG-LRVYGFDKEEKIQSLIHDARI 68 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCC------Ccccc------cc-cEEEeechHHHHHHHhhcceE
Confidence 789999873321122221 2222233446889999865 22330 11 235544 34 3345545554
Q ss_pred ceEEeccCchhHHHHHHcCCcEEeccCcc--------cchhhHHhhhccceeeeEeec
Q 010617 387 ACFLSHCGWNSTMEGVSNGIPFLCWPYFG--------DQFLNERYICDFWKVGLKFDR 436 (506)
Q Consensus 387 ~~~ItHgG~~sv~eal~~GvP~v~~P~~~--------DQ~~na~rv~~~lG~G~~l~~ 436 (506)
+|+|+|.||+..++..++|.+++|-.. .|-.-|..+.+ ++.=..-.+
T Consensus 69 --VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~sp 123 (161)
T COG5017 69 --VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACSP 123 (161)
T ss_pred --EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEcC
Confidence 999999999999999999999999643 58888888887 576666543
No 116
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.49 E-value=0.1 Score=55.21 Aligned_cols=89 Identities=10% Similarity=0.071 Sum_probs=61.6
Q ss_pred cCCeEEEeccchhhhhcCCCcceEEec----cCchhHHHHHHcCCcEEeccCcccchhhHHhhhcc----ce-eeeEeec
Q 010617 366 AARGQMISWAPQLRVLNHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDF----WK-VGLKFDR 436 (506)
Q Consensus 366 ~~n~~v~~~vpq~~lL~h~~v~~~ItH----gG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~----lG-~G~~l~~ 436 (506)
.+|+.+.+...-.++++.+++ +|.- |--+++.||+++|+|+|+-... .....+.+. +| .|..++.
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd~g----~~~elv~~~~~~~~g~~G~lv~~ 426 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATDVG----SCRELIEGADDEALGPAGEVVPP 426 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECCCC----ChHHHhcCCcccccCCceEEECC
Confidence 478888886666678877776 6543 2347899999999999985432 233344331 12 6777754
Q ss_pred CCCCCcCHHHHHHHHHHHhCChHHHHHHH
Q 010617 437 DEGGIITREEIKNKVDQVLGNQDFKARAL 465 (506)
Q Consensus 437 ~~~~~~~~~~l~~ai~~vl~d~~~r~~a~ 465 (506)
-+.++++++|.++++|+..++++.
T Consensus 427 -----~d~~~la~ai~~ll~~~~~~~~~~ 450 (475)
T cd03813 427 -----ADPEALARAILRLLKDPELRRAMG 450 (475)
T ss_pred -----CCHHHHHHHHHHHhcCHHHHHHHH
Confidence 479999999999999986555443
No 117
>PLN02316 synthase/transferase
Probab=97.49 E-value=0.32 Score=55.54 Aligned_cols=84 Identities=10% Similarity=0.070 Sum_probs=52.2
Q ss_pred cCCeEEEeccchh---hhhcCCCcceEEecc---C-chhHHHHHHcCCcEEeccCcc--cchhh-------HHhhhccce
Q 010617 366 AARGQMISWAPQL---RVLNHPSIACFLSHC---G-WNSTMEGVSNGIPFLCWPYFG--DQFLN-------ERYICDFWK 429 (506)
Q Consensus 366 ~~n~~v~~~vpq~---~lL~h~~v~~~ItHg---G-~~sv~eal~~GvP~v~~P~~~--DQ~~n-------a~rv~~~lG 429 (506)
++++.+....+.. .+++.+++ |+.-. | -.+.+||+++|+|.|+-...+ |.... +...... +
T Consensus 899 ~~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~-~ 975 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLE-P 975 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccC-C
Confidence 3566666444443 57766666 77432 2 258999999999888765432 32211 1111111 4
Q ss_pred eeeEeecCCCCCcCHHHHHHHHHHHhCC
Q 010617 430 VGLKFDRDEGGIITREEIKNKVDQVLGN 457 (506)
Q Consensus 430 ~G~~l~~~~~~~~~~~~l~~ai~~vl~d 457 (506)
.|..++. .+++.|..+|.+++.+
T Consensus 976 tGflf~~-----~d~~aLa~AL~raL~~ 998 (1036)
T PLN02316 976 NGFSFDG-----ADAAGVDYALNRAISA 998 (1036)
T ss_pred ceEEeCC-----CCHHHHHHHHHHHHhh
Confidence 6777753 5799999999999974
No 118
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.45 E-value=0.015 Score=59.07 Aligned_cols=85 Identities=18% Similarity=0.211 Sum_probs=59.9
Q ss_pred cCCeEEEeccchh-hhhcCCCcceEEecc-C-chhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCc
Q 010617 366 AARGQMISWAPQL-RVLNHPSIACFLSHC-G-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGII 442 (506)
Q Consensus 366 ~~n~~v~~~vpq~-~lL~h~~v~~~ItHg-G-~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~ 442 (506)
.+++.+.++.++. .+++.+++-++.++. | ..++.||+++|+|+|+..... .....++.. ..|..++. -
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~~-----~ 330 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVPK-----G 330 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeCC-----C
Confidence 4567777766544 578787774444542 3 468999999999999865431 133445553 67887754 4
Q ss_pred CHHHHHHHHHHHhCChH
Q 010617 443 TREEIKNKVDQVLGNQD 459 (506)
Q Consensus 443 ~~~~l~~ai~~vl~d~~ 459 (506)
+.++++++|.+++.|++
T Consensus 331 d~~~la~~i~~ll~~~~ 347 (372)
T cd04949 331 DIEALAEAIIELLNDPK 347 (372)
T ss_pred cHHHHHHHHHHHHcCHH
Confidence 79999999999999874
No 119
>PRK14099 glycogen synthase; Provisional
Probab=97.39 E-value=0.27 Score=52.24 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=32.4
Q ss_pred CCCCEEEEEcCC------CccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010617 1 MSRPRVLVMPAP------AQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (506)
Q Consensus 1 m~~~~il~~~~~------~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 41 (506)
|+++||||++.- +.|=-.-.-+|.++|+++||+|.++.+-+
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 899999998732 22334566788999999999999999964
No 120
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.37 E-value=0.0032 Score=56.46 Aligned_cols=90 Identities=19% Similarity=0.256 Sum_probs=65.4
Q ss_pred hcCCeEEEeccchh---hhhcCCCcceEEec----cCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecC
Q 010617 365 VAARGQMISWAPQL---RVLNHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRD 437 (506)
Q Consensus 365 ~~~n~~v~~~vpq~---~lL~h~~v~~~ItH----gG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~ 437 (506)
...++.+.+++++. +++..+++ +|+. |...++.||+++|+|+|+.- ...+...+.+. +.|..++.
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~~~~-~~g~~~~~- 142 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEIINDG-VNGFLFDP- 142 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHSGTT-TSEEEEST-
T ss_pred cccccccccccccccccccccccee--ccccccccccccccccccccccceeecc----ccCCceeeccc-cceEEeCC-
Confidence 35788899999833 57777777 7766 56679999999999999644 44456666663 67888864
Q ss_pred CCCCcCHHHHHHHHHHHhCChHHHHHHHH
Q 010617 438 EGGIITREEIKNKVDQVLGNQDFKARALE 466 (506)
Q Consensus 438 ~~~~~~~~~l~~ai~~vl~d~~~r~~a~~ 466 (506)
.+.+++.++|.+++.|++.++...+
T Consensus 143 ----~~~~~l~~~i~~~l~~~~~~~~l~~ 167 (172)
T PF00534_consen 143 ----NDIEELADAIEKLLNDPELRQKLGK 167 (172)
T ss_dssp ----TSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHCCHHHHHHHHH
Confidence 3899999999999988755554433
No 121
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.30 E-value=0.11 Score=53.94 Aligned_cols=114 Identities=10% Similarity=-0.054 Sum_probs=64.5
Q ss_pred EEEEeCccccCCHHHHHHHHHHHhhCCCCEEE-EEcCCCCCCCCCCCChhhHHhhcCCeEEEeccc-h---hhhhcCCCc
Q 010617 312 VYVSFGSFTILDQVQFQELALGLELCKRPFLW-VVRPDITTDANDRYPEGFQERVAARGQMISWAP-Q---LRVLNHPSI 386 (506)
Q Consensus 312 V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~-~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~vp-q---~~lL~h~~v 386 (506)
+++..|.....+...+..+++|+...+.++-+ .++.. . ... ..++...++.. + .++++.+++
T Consensus 243 ~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g----~-~~~--------~~~v~~~g~~~~~~~l~~~y~~aDv 309 (405)
T PRK10125 243 KIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKF----S-PFT--------AGNVVNHGFETDKRKLMSALNQMDA 309 (405)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCC----C-ccc--------ccceEEecCcCCHHHHHHHHHhCCE
Confidence 44445542222223356688888776554433 33321 0 111 23455556653 3 245555666
Q ss_pred ceEEecc----CchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHH
Q 010617 387 ACFLSHC----GWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKV 451 (506)
Q Consensus 387 ~~~ItHg----G~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai 451 (506)
||.-. --.++.||+++|+|+|+....+ ....+.+ +.|..+++ -+.++|++++
T Consensus 310 --fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv~~--~~G~lv~~-----~d~~~La~~~ 365 (405)
T PRK10125 310 --LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVLQK--SGGKTVSE-----EEVLQLAQLS 365 (405)
T ss_pred --EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhEeC--CcEEEECC-----CCHHHHHhcc
Confidence 77533 2368999999999999988765 2223333 57888865 3678888754
No 122
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.29 E-value=0.033 Score=51.53 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=34.6
Q ss_pred cCCeEEEeccch-h---hhhcCCCcceEEeccC----chhHHHHHHcCCcEEeccCcc
Q 010617 366 AARGQMISWAPQ-L---RVLNHPSIACFLSHCG----WNSTMEGVSNGIPFLCWPYFG 415 (506)
Q Consensus 366 ~~n~~v~~~vpq-~---~lL~h~~v~~~ItHgG----~~sv~eal~~GvP~v~~P~~~ 415 (506)
..|+.+.+++++ + .+++.+++ +|+-.. .+++.||+++|+|+|+.+..+
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 467778887633 2 23333555 777776 689999999999999977654
No 123
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.04 E-value=0.093 Score=52.36 Aligned_cols=135 Identities=13% Similarity=0.100 Sum_probs=77.9
Q ss_pred CCceEEEEeCcc---ccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEecc--c-hhhhh
Q 010617 308 PSSVVYVSFGSF---TILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWA--P-QLRVL 381 (506)
Q Consensus 308 ~~~vV~vs~GS~---~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~v--p-q~~lL 381 (506)
+++.|.+..|+. ...+.+.+..+++.+...+.++++..++. .+.+.-..+.+..+ +..+.+-. + -.+++
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~----~e~~~~~~i~~~~~-~~~l~g~~sL~el~ali 252 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGND----AEKQRAERIAEALP-GAVVLPKMSLAEVAALL 252 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCH----HHHHHHHHHHhhCC-CCeecCCCCHHHHHHHH
Confidence 355777777754 33577889999999876677877665433 11111122222222 22333322 2 33688
Q ss_pred cCCCcceEEeccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeee-EeecCCCCCcCHHHHHHHHHHHh
Q 010617 382 NHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGL-KFDRDEGGIITREEIKNKVDQVL 455 (506)
Q Consensus 382 ~h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~-~l~~~~~~~~~~~~l~~ai~~vl 455 (506)
+++++ +|+. ..|.++=|.+.|+|+|++ ++ +.+..+-.= +|-.. .+....-..++++++.+++.++|
T Consensus 253 ~~a~l--~I~~-DSgp~HlAaa~g~P~i~l--fg--~t~p~~~~P-~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 253 AGADA--VVGV-DTGLTHLAAALDKPTVTL--YG--ATDPGRTGG-YGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred HcCCE--EEeC-CChHHHHHHHcCCCEEEE--EC--CCCHhhccc-CCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 77776 9986 678899999999999975 21 111111111 12111 11111136799999999998875
No 124
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.87 E-value=0.0051 Score=52.68 Aligned_cols=127 Identities=13% Similarity=0.159 Sum_probs=65.6
Q ss_pred eEEEEeCcccc-CCHHHHHH-HHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEeccchh-hhhcCCCcc
Q 010617 311 VVYVSFGSFTI-LDQVQFQE-LALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQL-RVLNHPSIA 387 (506)
Q Consensus 311 vV~vs~GS~~~-~~~~~~~~-~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~vpq~-~lL~h~~v~ 387 (506)
++++++|+... ...+.+-. +++.+.+...++-+.+-+. .|+.+.+...+|+.+.+|++.. ++++.+++.
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~--------~~~~l~~~~~~~v~~~g~~~e~~~~l~~~dv~ 74 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGN--------GPDELKRLRRPNVRFHGFVEELPEILAAADVG 74 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECE--------SS-HHCCHHHCTEEEE-S-HHHHHHHHC-SEE
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeC--------CHHHHHHhcCCCEEEcCCHHHHHHHHHhCCEE
Confidence 45666666532 23343333 5555543333343333222 1112222225699999998633 578888885
Q ss_pred eEEec--cC-chhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCC
Q 010617 388 CFLSH--CG-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGN 457 (506)
Q Consensus 388 ~~ItH--gG-~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d 457 (506)
+..+. .| .+++.|++++|+|+|+.+.. ....++. .+.|..+ . -+++++.++|.+++.|
T Consensus 75 l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~~~-~~~~~~~-~-----~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 75 LIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIVEE-DGCGVLV-A-----NDPEELAEAIERLLND 135 (135)
T ss_dssp EE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE--T-----T-HHHHHHHHHHHHH-
T ss_pred EEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhheee-cCCeEEE-C-----CCHHHHHHHHHHHhcC
Confidence 55442 23 48999999999999997761 1222333 3777776 2 2799999999999865
No 125
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.72 E-value=0.022 Score=59.50 Aligned_cols=183 Identities=16% Similarity=0.197 Sum_probs=106.9
Q ss_pred CCceeeecccccCCCCCCCCCCCccccchhhhhhhcCCCCceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCC
Q 010617 270 FPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDI 349 (506)
Q Consensus 270 ~p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~ 349 (506)
+|+-++||.--.+.....++. ..+...+. .-++..+||++|--....+++.++..++-|.+.+-.++|.....-
T Consensus 725 lPh~ffi~d~~qk~~~~~dpn----~kP~r~~y--~Lp~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa 798 (966)
T KOG4626|consen 725 LPHCFFIGDHKQKNQDVLDPN----NKPTRSQY--GLPEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPA 798 (966)
T ss_pred CCceEEecCcccccccccCCC----CCCCCCCC--CCCCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccc
Confidence 678888887666443221110 01111111 123456999999888888999999999999999999999987552
Q ss_pred CCCCCCCCChhhHHh------hcCCeEEEeccchhh-----hhcCCCcceEEeccCchhHHHHHHcCCcEEeccCcccch
Q 010617 350 TTDANDRYPEGFQER------VAARGQMISWAPQLR-----VLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQF 418 (506)
Q Consensus 350 ~~~~~~~lp~~~~~~------~~~n~~v~~~vpq~~-----lL~h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~ 418 (506)
.+. .+|+.. .++++.+.+-++-.+ .|..-.++-+.+. |+.|.++.|+.|||||.+|...--.
T Consensus 799 ~ge------~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAs 871 (966)
T KOG4626|consen 799 VGE------QRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLAS 871 (966)
T ss_pred cch------HHHHHHHHHhCCCccceeeccccchHHHHHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHH
Confidence 111 222211 145555554444322 2322223445555 6889999999999999999764433
Q ss_pred hhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 010617 419 LNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSS 474 (506)
Q Consensus 419 ~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~~~r~~a~~l~~~~~~~ 474 (506)
..|.-+--.+|+|..+.+ +.++-.+.--++=.|..| .++++.+++++
T Consensus 872 rVa~Sll~~~Gl~hliak------~~eEY~~iaV~Latd~~~---L~~lr~~l~~~ 918 (966)
T KOG4626|consen 872 RVAASLLTALGLGHLIAK------NREEYVQIAVRLATDKEY---LKKLRAKLRKA 918 (966)
T ss_pred HHHHHHHHHcccHHHHhh------hHHHHHHHHHHhhcCHHH---HHHHHHHHHHH
Confidence 344333333799987754 444433333333335433 33444455543
No 126
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.67 E-value=0.0059 Score=61.46 Aligned_cols=109 Identities=13% Similarity=0.261 Sum_probs=77.2
Q ss_pred cCCeEEEeccchhhhhcC-C-CcceEEec-------cCc------hhHHHHHHcCCcEEeccCcccchhhHHhhhcccee
Q 010617 366 AARGQMISWAPQLRVLNH-P-SIACFLSH-------CGW------NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKV 430 (506)
Q Consensus 366 ~~n~~v~~~vpq~~lL~h-~-~v~~~ItH-------gG~------~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~ 430 (506)
.+|+.+.+|+|+.++..+ . +.+++... +.. +-+.+++++|+|+|+.+ +...+..|++. ++
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~----~~~~~~~V~~~-~~ 280 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWS----KAAIADFIVEN-GL 280 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECC----CccHHHHHHhC-Cc
Confidence 578889999999876432 1 33222221 111 22777899999999854 45677888885 99
Q ss_pred eeEeecCCCCCcCHHHHHHHHHHHhCCh--HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHH
Q 010617 431 GLKFDRDEGGIITREEIKNKVDQVLGNQ--DFKARALELKEKAMSSVREGGSSYKTFQNFLQ 490 (506)
Q Consensus 431 G~~l~~~~~~~~~~~~l~~ai~~vl~d~--~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~ 490 (506)
|..++ +.+++.+++.++..+. .++++++++++++++ |.-..+.+++++.
T Consensus 281 G~~v~-------~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~ 331 (333)
T PRK09814 281 GFVVD-------SLEELPEIIDNITEEEYQEMVENVKKISKLLRN----GYFTKKALVDAIK 331 (333)
T ss_pred eEEeC-------CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHh
Confidence 99985 4678999999865332 578999999999997 6666776666654
No 127
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.30 E-value=0.3 Score=49.51 Aligned_cols=108 Identities=15% Similarity=0.176 Sum_probs=71.4
Q ss_pred CC--CCEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhHHHHhhhcCCCCCCCeEE-EecCCCCCCCCCc
Q 010617 1 MS--RPRVLVMPAPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYNHKRVVESLQGKNYLGEQIHL-VSIPDGMEPWEDR 75 (506)
Q Consensus 1 m~--~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~ 75 (506)
|. .+|||++-....|++.-..++.++|.++ +.+|++++.+.+...++.. +.++- +.++...
T Consensus 1 ~~~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~id~vi~~~~~~------ 66 (352)
T PRK10422 1 MDKPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSEN--------PEINALYGIKNKK------ 66 (352)
T ss_pred CCCCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccC--------CCceEEEEecccc------
Confidence 65 4789999999999999999999999996 7999999998888776543 34432 2333210
Q ss_pred cCHHHHHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEE
Q 010617 76 NDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAV 133 (506)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~ 133 (506)
......+ ..+..++.+++. .++|++|.-....-...++...|.|..+
T Consensus 67 ~~~~~~~--------~~~~~l~~~lr~---~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 67 AGASEKI--------KNFFSLIKVLRA---NKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred ccHHHHH--------HHHHHHHHHHhh---CCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 0000000 113344556665 7999999654444455666777777655
No 128
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.16 E-value=0.59 Score=47.25 Aligned_cols=103 Identities=11% Similarity=0.081 Sum_probs=70.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEE-ecCCCCCCCCCccCHHH
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLV-SIPDGMEPWEDRNDLGK 80 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~ 80 (506)
||||++-..+.|++.-...+.++|.++ +.+|++++.+.+.+.++.. +.++.+ .++.. .. ...+
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~vd~vi~~~~~--~~--~~~~-- 66 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM--------PEVNEAIPMPLG--HG--ALEI-- 66 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC--------CccCEEEecccc--cc--hhhh--
Confidence 479999999999999999999999995 8999999998888777654 344432 22221 00 0000
Q ss_pred HHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEE
Q 010617 81 LIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAV 133 (506)
Q Consensus 81 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~ 133 (506)
....+++..++. .++|++|.=....-...++...|+|.-.
T Consensus 67 ----------~~~~~l~~~lr~---~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 67 ----------GERRRLGHSLRE---KRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred ----------HHHHHHHHHHHh---cCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 112344555665 7999998655445566677777887655
No 129
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.06 Score=56.22 Aligned_cols=134 Identities=15% Similarity=0.171 Sum_probs=87.4
Q ss_pred CCCceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhh------cCCeEEEeccchhhh
Q 010617 307 QPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERV------AARGQMISWAPQLRV 380 (506)
Q Consensus 307 ~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~------~~n~~v~~~vpq~~l 380 (506)
+++.+||+|++-.....++.+..-++-++..+..++|..++.. .+.....+++.. .++.++.+-.|..+-
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~----~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h 502 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGD----DAEINARLRDLAEREGVDSERLRFLPPAPNEDH 502 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCC----cHHHHHHHHHHHHHcCCChhheeecCCCCCHHH
Confidence 3466999999999999999999999999999999999998742 122222232211 244555566654443
Q ss_pred h---cCCCcceEE---eccCchhHHHHHHcCCcEEeccCcccchh--hHHhhhccceeeeEeecCCCCCcCHHHHHHHHH
Q 010617 381 L---NHPSIACFL---SHCGWNSTMEGVSNGIPFLCWPYFGDQFL--NERYICDFWKVGLKFDRDEGGIITREEIKNKVD 452 (506)
Q Consensus 381 L---~h~~v~~~I---tHgG~~sv~eal~~GvP~v~~P~~~DQ~~--na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~ 452 (506)
+ +.+++ |+ --||..|..|+|+.|||+|.++ ++|+. |+.-+...+|+-..+-. -.++-+.++|+
T Consensus 503 ~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA~-----s~~dYV~~av~ 573 (620)
T COG3914 503 RARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVAD-----SRADYVEKAVA 573 (620)
T ss_pred HHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhcC-----CHHHHHHHHHH
Confidence 3 33444 65 4799999999999999999876 55552 33333332355444432 13455666654
Q ss_pred H
Q 010617 453 Q 453 (506)
Q Consensus 453 ~ 453 (506)
-
T Consensus 574 ~ 574 (620)
T COG3914 574 F 574 (620)
T ss_pred h
Confidence 3
No 130
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.14 E-value=0.1 Score=44.84 Aligned_cols=103 Identities=16% Similarity=0.242 Sum_probs=65.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHHH
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEK 84 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 84 (506)
|||+++.....| ...+++.|.++||+|++++.....+..... .++.++.++.... .....+
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~--------~~i~~~~~~~~~k------~~~~~~-- 61 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEII--------EGIKVIRLPSPRK------SPLNYI-- 61 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHh--------CCeEEEEecCCCC------ccHHHH--
Confidence 577777655555 557799999999999999996554333322 4888888853311 112222
Q ss_pred HHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcc---hHHHHHHHcC-CceEEEcc
Q 010617 85 CLQVMPGKLEELIEEINSREDEKIDCFIADGNIG---WSMEIAKKMN-VRGAVFWP 136 (506)
Q Consensus 85 ~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~---~~~~~A~~lg-IP~v~~~~ 136 (506)
.. . .+..++.+ .+||+|.+-.... .+..++...+ +|++....
T Consensus 62 --~~-~-~l~k~ik~------~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 62 --KY-F-RLRKIIKK------EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred --HH-H-HHHHHhcc------CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 11 1 34555555 8999997665443 2445667788 99886443
No 131
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.01 E-value=0.58 Score=45.63 Aligned_cols=102 Identities=15% Similarity=0.140 Sum_probs=66.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCcchhHHHHhhhcCCCCCCCeEE-EecCCCCCCCCCccCHHHH
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHG--FRVTFVNTDYNHKRVVESLQGKNYLGEQIHL-VSIPDGMEPWEDRNDLGKL 81 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~ 81 (506)
|||++-..+.|++.-+.++.++|.++. -+|++++.+.+.+.++.. +.++- +.++... ....+
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~--------p~id~v~~~~~~~----~~~~~--- 65 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELM--------PEVDRVIVLPKKH----GKLGL--- 65 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcC--------CccCEEEEcCCcc----cccch---
Confidence 689999899999999999999999975 899999998887766553 33432 2222111 00111
Q ss_pred HHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEE
Q 010617 82 IEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAV 133 (506)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~ 133 (506)
..+.+++..++. .++|+++.=....-...++...+++...
T Consensus 66 ---------~~~~~~~~~l~~---~~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 66 ---------GARRRLARALRR---RRYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred ---------HHHHHHHHHHhh---cCCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 123344555555 7899998665544444455555655543
No 132
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=95.88 E-value=0.65 Score=46.83 Aligned_cols=105 Identities=15% Similarity=0.157 Sum_probs=70.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhHHHHhhhcCCCCCCCeE-EEecCCCCCCCCCccCHHHH
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYNHKRVVESLQGKNYLGEQIH-LVSIPDGMEPWEDRNDLGKL 81 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~ 81 (506)
|||++-....|++.-+.++.++|.++ +.+|++++.+.+.+.++.. +.+. ++.++...... ....+
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~vd~vi~~~~~~~~~----~~~~~ 68 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN--------PDINALYGLDRKKAKA----GERKL 68 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC--------CCccEEEEeChhhhcc----hHHHH
Confidence 68999989999999999999999995 7999999998888777654 3453 23433221100 00001
Q ss_pred HHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEE
Q 010617 82 IEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAV 133 (506)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~ 133 (506)
. ..-+++..++. .++|++|.-.....+..++...|.|.-+
T Consensus 69 ----~-----~~~~l~~~lr~---~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 69 ----A-----NQFHLIKVLRA---NRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred ----H-----HHHHHHHHHHh---CCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 0 12234555555 7999999655555677788888988655
No 133
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.79 E-value=2.1 Score=41.76 Aligned_cols=104 Identities=18% Similarity=0.096 Sum_probs=69.9
Q ss_pred CCccCHHHHHHHHHHHHhCCCeEEEEeCCcc--hhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHHHHHHhC
Q 010617 12 PAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN--HKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVM 89 (506)
Q Consensus 12 ~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~--~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (506)
+-.-|+.-+..+...|.++||+|.+.+-+.. .+.+... ||.+..+...-. ..+.+.+..... -
T Consensus 8 ~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~y---------gf~~~~Igk~g~-----~tl~~Kl~~~~e-R 72 (346)
T COG1817 8 GNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLY---------GFPYKSIGKHGG-----VTLKEKLLESAE-R 72 (346)
T ss_pred CCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHh---------CCCeEeecccCC-----ccHHHHHHHHHH-H
Confidence 3446888889999999999999998877542 2333333 788888775321 122211111111 1
Q ss_pred cHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccc
Q 010617 90 PGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPS 137 (506)
Q Consensus 90 ~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~ 137 (506)
...+.+++.+ .+||+.+. -..+.+..+|-.+|+|.+.+.-.
T Consensus 73 ~~~L~ki~~~------~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ 113 (346)
T COG1817 73 VYKLSKIIAE------FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDN 113 (346)
T ss_pred HHHHHHHHhh------cCCceEee-cCCcchhhHHhhcCCceEEecCC
Confidence 2235566666 89999999 56788999999999999997543
No 134
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=95.65 E-value=0.26 Score=51.16 Aligned_cols=176 Identities=14% Similarity=0.169 Sum_probs=99.3
Q ss_pred hhhhcCCCCceEEEEeCccccC------C-H---HHHHHHHHHHhhCCCCEEEEEcCCCCCC--CCC-CCChhhHHhhc-
Q 010617 301 KWLDQQQPSSVVYVSFGSFTIL------D-Q---VQFQELALGLELCKRPFLWVVRPDITTD--AND-RYPEGFQERVA- 366 (506)
Q Consensus 301 ~~l~~~~~~~vV~vs~GS~~~~------~-~---~~~~~~~~al~~~~~~~i~~~~~~~~~~--~~~-~lp~~~~~~~~- 366 (506)
.|+....++++|-|+....... . . +.+..+++.+...|+++++.--...... ..+ ..-..+.+.++
T Consensus 226 ~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~ 305 (426)
T PRK10017 226 HWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVSD 305 (426)
T ss_pred hhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhccc
Confidence 4444333455787776533211 1 2 2344455556556888775543210000 000 01122333443
Q ss_pred -CCeEEE--eccchh--hhhcCCCcceEEeccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeE-eecCCCC
Q 010617 367 -ARGQMI--SWAPQL--RVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLK-FDRDEGG 440 (506)
Q Consensus 367 -~n~~v~--~~vpq~--~lL~h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~-l~~~~~~ 440 (506)
++..+. ++-+.+ .+++++++ +|..==+ +..-|+..|||.+.++. |+.. ..-+.. +|.... .+. +
T Consensus 306 ~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~RlH-a~I~a~~~gvP~i~i~Y--~~K~-~~~~~~-lg~~~~~~~~---~ 375 (426)
T PRK10017 306 PARYHVVMDELNDLEMGKILGACEL--TVGTRLH-SAIISMNFGTPAIAINY--EHKS-AGIMQQ-LGLPEMAIDI---R 375 (426)
T ss_pred ccceeEecCCCChHHHHHHHhhCCE--EEEecch-HHHHHHHcCCCEEEeee--hHHH-HHHHHH-cCCccEEech---h
Confidence 233433 333443 67867665 8875433 45668899999999997 3332 223345 687765 555 6
Q ss_pred CcCHHHHHHHHHHHhCCh-HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 010617 441 IITREEIKNKVDQVLGNQ-DFKARALELKEKAMSSVREGGSSYKTFQNFLQWV 492 (506)
Q Consensus 441 ~~~~~~l~~ai~~vl~d~-~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~ 492 (506)
+++.++|.+.+.++++|. .++++.++--++.++ .+.+.+.++++.+
T Consensus 376 ~l~~~~Li~~v~~~~~~r~~~~~~l~~~v~~~r~------~~~~~~~~~~~~~ 422 (426)
T PRK10017 376 HLLDGSLQAMVADTLGQLPALNARLAEAVSRERQ------TGMQMVQSVLERI 422 (426)
T ss_pred hCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHh
Confidence 789999999999999885 677776666666665 3345566666554
No 135
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.56 E-value=1.2 Score=44.80 Aligned_cols=102 Identities=16% Similarity=0.124 Sum_probs=68.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhHHHHhhhcCCCCCCCeEE-EecCCCCCCCCCccCHHHH
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYNHKRVVESLQGKNYLGEQIHL-VSIPDGMEPWEDRNDLGKL 81 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~ 81 (506)
|||++-..+-|++.-..++.++|.+. +.+|++++.+.+.+.++.. +.++- +.++.. .. ...+.
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~id~v~~~~~~--~~--~~~~~-- 66 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM--------PEIRQAIDMPLG--HG--ALELT-- 66 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC--------chhceeeecCCc--cc--chhhh--
Confidence 68999999999999999999999996 8999999998777666543 33432 222211 00 00110
Q ss_pred HHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEE
Q 010617 82 IEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAV 133 (506)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~ 133 (506)
....++.+++. .++|++|.-....-...++...|+|.-.
T Consensus 67 ----------~~~~~~~~lr~---~~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 67 ----------ERRRLGRSLRE---ERYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred ----------HHHHHHHHHhh---cCCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 12234555555 7999999876555566677777877544
No 136
>PRK14098 glycogen synthase; Provisional
Probab=95.37 E-value=0.32 Score=51.74 Aligned_cols=130 Identities=15% Similarity=0.077 Sum_probs=74.7
Q ss_pred ceEEEEeCccccC-CHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhh---HHhhcCCeEEEeccchh---hhhc
Q 010617 310 SVVYVSFGSFTIL-DQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGF---QERVAARGQMISWAPQL---RVLN 382 (506)
Q Consensus 310 ~vV~vs~GS~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~---~~~~~~n~~v~~~vpq~---~lL~ 382 (506)
..+++..|..... ..+.+...+..+...+.++++.-.++ ..+.+.+ .++.++|+.+...++.. .+++
T Consensus 307 ~~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~------~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a 380 (489)
T PRK14098 307 TPLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGD------KEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIA 380 (489)
T ss_pred CCEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCC------HHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHH
Confidence 3566666765322 23333333333333456665554322 1111222 23446788888888765 5777
Q ss_pred CCCcceEEecc---Cc-hhHHHHHHcCCcEEeccCcc--cchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHh
Q 010617 383 HPSIACFLSHC---GW-NSTMEGVSNGIPFLCWPYFG--DQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVL 455 (506)
Q Consensus 383 h~~v~~~ItHg---G~-~sv~eal~~GvP~v~~P~~~--DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl 455 (506)
.+++ |+.-. |. .+.+||+++|+|.|+....+ |...+ ..++. +.|..++. .++++|.++|.+++
T Consensus 381 ~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~~-~~G~l~~~-----~d~~~la~ai~~~l 449 (489)
T PRK14098 381 GLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSEDK-GSGFIFHD-----YTPEALVAKLGEAL 449 (489)
T ss_pred hCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCCC-CceeEeCC-----CCHHHHHHHHHHHH
Confidence 7776 77543 22 47889999999888766533 32211 11222 67887753 47899999999875
No 137
>PHA01633 putative glycosyl transferase group 1
Probab=95.30 E-value=0.81 Score=45.90 Aligned_cols=85 Identities=12% Similarity=0.081 Sum_probs=54.9
Q ss_pred hcCCeEEE---eccchh---hhhcCCCcceEEec---cCc-hhHHHHHHcCCcEEeccC------cccc------hhhHH
Q 010617 365 VAARGQMI---SWAPQL---RVLNHPSIACFLSH---CGW-NSTMEGVSNGIPFLCWPY------FGDQ------FLNER 422 (506)
Q Consensus 365 ~~~n~~v~---~~vpq~---~lL~h~~v~~~ItH---gG~-~sv~eal~~GvP~v~~P~------~~DQ------~~na~ 422 (506)
.++++.+. +++++. ++++.+++ ||.- =|+ .++.||+++|+|+|+--. .+|+ ..++.
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 45678777 455654 56766666 7754 243 589999999999998532 2232 22222
Q ss_pred hhh--ccceeeeEeecCCCCCcCHHHHHHHHHHHhCC
Q 010617 423 YIC--DFWKVGLKFDRDEGGIITREEIKNKVDQVLGN 457 (506)
Q Consensus 423 rv~--~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d 457 (506)
... +. |.|..++ ..++++++++|.+++..
T Consensus 277 ~~~~~~~-g~g~~~~-----~~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 277 EYYDKEH-GQKWKIH-----KFQIEDMANAIILAFEL 307 (335)
T ss_pred HhcCccc-Cceeeec-----CCCHHHHHHHHHHHHhc
Confidence 222 22 6666663 47899999999999543
No 138
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=95.28 E-value=0.023 Score=45.84 Aligned_cols=53 Identities=13% Similarity=0.126 Sum_probs=43.9
Q ss_pred cchhhhhhhcCCCCceEEEEeCccccC---CH--HHHHHHHHHHhhCCCCEEEEEcCC
Q 010617 296 DSNCLKWLDQQQPSSVVYVSFGSFTIL---DQ--VQFQELALGLELCKRPFLWVVRPD 348 (506)
Q Consensus 296 ~~~l~~~l~~~~~~~vV~vs~GS~~~~---~~--~~~~~~~~al~~~~~~~i~~~~~~ 348 (506)
...+..|+...+.++.|.+|+||.... .. ..+..+++++..++..+|.++...
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 344568999988899999999998443 22 478999999999999999999766
No 139
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.97 E-value=0.84 Score=48.66 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=45.9
Q ss_pred cCCeEEEeccchh-hhhcCCCcceEEe---ccC-chhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeec
Q 010617 366 AARGQMISWAPQL-RVLNHPSIACFLS---HCG-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDR 436 (506)
Q Consensus 366 ~~n~~v~~~vpq~-~lL~h~~v~~~It---HgG-~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~ 436 (506)
.+|+.+.+|..+. .+|+.+++ ||. +-| -+++.||+++|+|+|+.... .+...+.+. ..|..++.
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV~dG-~nG~LVp~ 522 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECFIEG-VSGFILDD 522 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHcccC-CcEEEECC
Confidence 4778888886433 57877777 775 345 46999999999999977653 355566663 67888765
No 140
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=94.59 E-value=0.44 Score=37.70 Aligned_cols=81 Identities=15% Similarity=0.136 Sum_probs=51.7
Q ss_pred ccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccce-eeeEeecCCCCCcCHHHHHHHHHHHhCChHHHH-HHHHHHH
Q 010617 392 HCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWK-VGLKFDRDEGGIITREEIKNKVDQVLGNQDFKA-RALELKE 469 (506)
Q Consensus 392 HgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG-~G~~l~~~~~~~~~~~~l~~ai~~vl~d~~~r~-~a~~l~~ 469 (506)
+|-..-+.|++++|+|+|.-.. ......+.+ | .++.. . +.+++.++|..+++|+..++ -+++..+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~--~~~~~~~-----~--~~~el~~~i~~ll~~~~~~~~ia~~a~~ 75 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFED--GEHIITY-----N--DPEELAEKIEYLLENPEERRRIAKNARE 75 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCC--CCeEEEE-----C--CHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 4556789999999999997654 223333332 4 33333 2 89999999999999985444 3444444
Q ss_pred HHHhhhhcCCChHHHHHHHH
Q 010617 470 KAMSSVREGGSSYKTFQNFL 489 (506)
Q Consensus 470 ~~~~~~~~gg~~~~~~~~~~ 489 (506)
.+++ .-+....+++++
T Consensus 76 ~v~~----~~t~~~~~~~il 91 (92)
T PF13524_consen 76 RVLK----RHTWEHRAEQIL 91 (92)
T ss_pred HHHH----hCCHHHHHHHHH
Confidence 4443 445455555554
No 141
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=94.56 E-value=0.068 Score=46.49 Aligned_cols=97 Identities=20% Similarity=0.278 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHHHHHHhCcHHHHHHHH
Q 010617 19 PLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELIE 98 (506)
Q Consensus 19 p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 98 (506)
-+..|+++|.++||+|++++.......-+. ...++.++.++-..... .......+ ..+..++
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~~~~~~~--------~~~~~~l- 67 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEE-------EEDGVRVHRLPLPRRPW--PLRLLRFL--------RRLRRLL- 67 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SE-------EETTEEEEEE--S-SSS--GGGHCCHH--------HHHHHHC-
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCccccc-------ccCCceEEeccCCccch--hhhhHHHH--------HHHHHHH-
Confidence 467899999999999999997655542211 12467777766322211 00000011 1233333
Q ss_pred HHhcCCCCCccEEEecCCcc-hHHHHHH-HcCCceEEEcc
Q 010617 99 EINSREDEKIDCFIADGNIG-WSMEIAK-KMNVRGAVFWP 136 (506)
Q Consensus 99 ~l~~~~~~~~DlvV~D~~~~-~~~~~A~-~lgIP~v~~~~ 136 (506)
.... .+||+|.+-.... ....++. ..++|++.-..
T Consensus 68 ~~~~---~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 68 AARR---ERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp HHCT------SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred hhhc---cCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 1122 7999999876432 3334444 78999988543
No 142
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=94.52 E-value=4.5 Score=38.51 Aligned_cols=78 Identities=18% Similarity=0.211 Sum_probs=50.6
Q ss_pred HHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEE------eccchhhhhcCCCcceEEeccCc-hhHH
Q 010617 327 FQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMI------SWAPQLRVLNHPSIACFLSHCGW-NSTM 399 (506)
Q Consensus 327 ~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~------~~vpq~~lL~h~~v~~~ItHgG~-~sv~ 399 (506)
...+.+.+++.|..++++.... ..+.+..-+...+.....++ ++=|+-++|+.++. +|.-... |-..
T Consensus 186 ~~~l~k~l~~~g~~~lisfSRR----Tp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ady--ii~TaDSinM~s 259 (329)
T COG3660 186 ASLLVKILENQGGSFLISFSRR----TPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADY--IISTADSINMCS 259 (329)
T ss_pred HHHHHHHHHhCCceEEEEeecC----CcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcce--EEEecchhhhhH
Confidence 3346667788999999998765 22222222222232222222 45689999966665 7777765 7778
Q ss_pred HHHHcCCcEEe
Q 010617 400 EGVSNGIPFLC 410 (506)
Q Consensus 400 eal~~GvP~v~ 410 (506)
||++.|+|+.+
T Consensus 260 EAasTgkPv~~ 270 (329)
T COG3660 260 EAASTGKPVFI 270 (329)
T ss_pred HHhccCCCeEE
Confidence 99999999966
No 143
>PHA01630 putative group 1 glycosyl transferase
Probab=94.51 E-value=2.4 Score=42.62 Aligned_cols=93 Identities=15% Similarity=0.065 Sum_probs=54.1
Q ss_pred eccchhh---hhcCCCcceEEe--c-cC-chhHHHHHHcCCcEEeccCcc--cchh---hHHhhhcc----------cee
Q 010617 373 SWAPQLR---VLNHPSIACFLS--H-CG-WNSTMEGVSNGIPFLCWPYFG--DQFL---NERYICDF----------WKV 430 (506)
Q Consensus 373 ~~vpq~~---lL~h~~v~~~It--H-gG-~~sv~eal~~GvP~v~~P~~~--DQ~~---na~rv~~~----------lG~ 430 (506)
.++|+.+ +++.+++ ||. . .| -.++.||+++|+|+|+.-..+ |... |+.-+... .++
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~ 273 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHV 273 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCccc
Confidence 4476654 5767777 653 3 33 468999999999999976543 3221 11111100 023
Q ss_pred eeEeecCCCCCcCHHHHHHHHHHHhCC---hHHHHHHHHHHHHHHh
Q 010617 431 GLKFDRDEGGIITREEIKNKVDQVLGN---QDFKARALELKEKAMS 473 (506)
Q Consensus 431 G~~l~~~~~~~~~~~~l~~ai~~vl~d---~~~r~~a~~l~~~~~~ 473 (506)
|..++. +.+++.+++.+++.| +..++....-+...++
T Consensus 274 G~~v~~------~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~ 313 (331)
T PHA01630 274 GYFLDP------DIEDAYQKLLEALANWTPEKKKENLEGRAILYRE 313 (331)
T ss_pred ccccCC------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 444432 678888888888876 4555555554444443
No 144
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=94.35 E-value=4.2 Score=40.52 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=39.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhHHH
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYNHKRVV 47 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~ 47 (506)
||||++-....|++.-..++.+.|.++ +.+|++++.+.+...++
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~ 46 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPS 46 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHh
Confidence 589999999999999999999999996 89999999987776554
No 145
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=93.31 E-value=5.7 Score=39.88 Aligned_cols=104 Identities=16% Similarity=0.130 Sum_probs=71.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHH
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHG--FRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKL 81 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 81 (506)
++||++-...-|++.=..++-+.|.++. .++++++.+.+.+.++.. +.+.-+-.-.. ....
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~--------p~I~~vi~~~~-----~~~~---- 64 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN--------PEIDKVIIIDK-----KKKG---- 64 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC--------hHhhhhccccc-----cccc----
Confidence 6899999889999999999999999985 999999998888877554 23332221110 0001
Q ss_pred HHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEE
Q 010617 82 IEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAV 133 (506)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~ 133 (506)
........+...+++ .++|+||.=....=...++...++|.-.
T Consensus 65 ------~~~~~~~~l~~~lr~---~~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 65 ------LGLKERLALLRTLRK---ERYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred ------cchHHHHHHHHHhhc---cCCCEEEECcccHHHHHHHHHhCCCccc
Confidence 111123445556665 7899999776666566677788888766
No 146
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=92.98 E-value=11 Score=39.74 Aligned_cols=62 Identities=18% Similarity=0.239 Sum_probs=45.0
Q ss_pred hHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCChHHHHHHHH
Q 010617 397 STMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALE 466 (506)
Q Consensus 397 sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~~~r~~a~~ 466 (506)
++.||+++|+|+++.=-.+ =+..++. .-.|...++ ..-...++++++.++..|++++.++.+
T Consensus 381 v~IEAMa~glPvvAt~~GG----P~EiV~~-~~tG~l~dp---~~e~~~~~a~~~~kl~~~p~l~~~~~~ 442 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATNNGG----PAEIVVH-GVTGLLIDP---GQEAVAELADALLKLRRDPELWARMGK 442 (495)
T ss_pred eeHHHHhcCCCEEEecCCC----ceEEEEc-CCcceeeCC---chHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 7899999999999765443 4455565 356888875 222344799999999999988665543
No 147
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=92.85 E-value=0.75 Score=41.25 Aligned_cols=95 Identities=11% Similarity=0.103 Sum_probs=56.6
Q ss_pred hCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHHHHHHhCcHHHHHHHHHHhcCCCCCc
Q 010617 29 KHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELIEEINSREDEKI 108 (506)
Q Consensus 29 ~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 108 (506)
++||+|++++........ +|++...+...-.......-....++........ +-..+..|++.+ ..|
T Consensus 1 q~gh~v~fl~~~~~~~~~-----------~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg~a-v~~a~~~L~~~G-f~P 67 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP-----------PGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRGQA-VARAARQLRAQG-FVP 67 (171)
T ss_pred CCCCEEEEEecCCCCCCC-----------CCcEEEEeCCCCCCCCCCCcccccHHHHHHHHHH-HHHHHHHHHHcC-CCC
Confidence 589999999965444322 2777777765222221111111112222222222 333344444444 899
Q ss_pred cEEEecCCcchHHHHHHHc-CCceEEEcc
Q 010617 109 DCFIADGNIGWSMEIAKKM-NVRGAVFWP 136 (506)
Q Consensus 109 DlvV~D~~~~~~~~~A~~l-gIP~v~~~~ 136 (506)
|+||.=.-...++-+-+.+ ++|.+.+.-
T Consensus 68 DvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 68 DVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred CEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 9999998777899999999 899999753
No 148
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=91.49 E-value=16 Score=36.36 Aligned_cols=40 Identities=13% Similarity=0.064 Sum_probs=28.4
Q ss_pred CCccEEEecCCcchH-HHHHHHcCCceEEEccchHHHHHHH
Q 010617 106 EKIDCFIADGNIGWS-MEIAKKMNVRGAVFWPSSAASVALV 145 (506)
Q Consensus 106 ~~~DlvV~D~~~~~~-~~~A~~lgIP~v~~~~~~~~~~~~~ 145 (506)
..||+.|=.+-.+.. ..++...++|++.+.+.|..+....
T Consensus 149 ~~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~DML 189 (465)
T KOG1387|consen 149 FPPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTISTDML 189 (465)
T ss_pred CCchheEecCCCcchhHHHHHHccCceEEEEecccccHHHH
Confidence 689998866655544 4445566899999988877765533
No 149
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=91.40 E-value=2.2 Score=45.63 Aligned_cols=89 Identities=19% Similarity=0.298 Sum_probs=62.7
Q ss_pred CCeEEEeccch---hhhhcCCCcceEEecc---CchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCC
Q 010617 367 ARGQMISWAPQ---LRVLNHPSIACFLSHC---GWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGG 440 (506)
Q Consensus 367 ~n~~v~~~vpq---~~lL~h~~v~~~ItHg---G~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~ 440 (506)
..+.+.++... ..++.++++ +|.-+ |.++..||+.+|+|+| .......|+.. .=|..+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li~----- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYIID----- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEeC-----
Confidence 46667787773 256756555 88776 6789999999999999 33345566663 5676663
Q ss_pred CcCHHHHHHHHHHHhCChH----HHHHHHHHHHHHH
Q 010617 441 IITREEIKNKVDQVLGNQD----FKARALELKEKAM 472 (506)
Q Consensus 441 ~~~~~~l~~ai~~vl~d~~----~r~~a~~l~~~~~ 472 (506)
+..+|.++|..+|.+.+ +...+-+.+++..
T Consensus 474 --d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS 507 (519)
T TIGR03713 474 --DISELLKALDYYLDNLKNWNYSLAYSIKLIDDYS 507 (519)
T ss_pred --CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 68999999999999873 4444444444443
No 150
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=90.77 E-value=1.9 Score=38.77 Aligned_cols=114 Identities=17% Similarity=0.153 Sum_probs=59.0
Q ss_pred EEEcCCCccCHHHHHHHHHHH-HhC-CCeEEEEeCCcc--hhHHHHhhhcCCCCCCCeEEEecCCCCCCCC-CccCHHHH
Q 010617 7 LVMPAPAQGHVIPLLEFSQCL-AKH-GFRVTFVNTDYN--HKRVVESLQGKNYLGEQIHLVSIPDGMEPWE-DRNDLGKL 81 (506)
Q Consensus 7 l~~~~~~~GH~~p~l~La~~L-~~r-Gh~Vt~~~~~~~--~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~ 81 (506)
+++. ++.||+.-++.|.+.+ .++ .++..+++.... ...+.+..... .....+..++......+ ...+....
T Consensus 2 l~v~-gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~---~~~~~~~~~~r~r~v~q~~~~~~~~~ 77 (170)
T PF08660_consen 2 LVVL-GSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSS---SKRHKILEIPRAREVGQSYLTSIFTT 77 (170)
T ss_pred EEEE-cCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhc---cccceeeccceEEEechhhHhhHHHH
Confidence 3443 7889999999999999 333 355555555433 22232221110 00113444442221110 11111111
Q ss_pred HHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcc--hHHHHHHHc------CCceEEEc
Q 010617 82 IEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG--WSMEIAKKM------NVRGAVFW 135 (506)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~--~~~~~A~~l------gIP~v~~~ 135 (506)
+ ......+.-+.. .+||+||+..-.. ....+|..+ |.+.|.+-
T Consensus 78 l----~~~~~~~~il~r-------~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIE 128 (170)
T PF08660_consen 78 L----RAFLQSLRILRR-------ERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIE 128 (170)
T ss_pred H----HHHHHHHHHHHH-------hCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEE
Confidence 1 122222222222 5899999998655 477788888 88888854
No 151
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.63 E-value=19 Score=35.80 Aligned_cols=130 Identities=15% Similarity=0.236 Sum_probs=82.8
Q ss_pred CCCceEEEEeCccccCCHHHHHHHHHHHhh---------CCC-CEEEEEcCCCCCCCCCCCChhhHHhhc----CCeEEE
Q 010617 307 QPSSVVYVSFGSFTILDQVQFQELALGLEL---------CKR-PFLWVVRPDITTDANDRYPEGFQERVA----ARGQMI 372 (506)
Q Consensus 307 ~~~~vV~vs~GS~~~~~~~~~~~~~~al~~---------~~~-~~i~~~~~~~~~~~~~~lp~~~~~~~~----~n~~v~ 372 (506)
+.++.++||.-| -.+.+.+..+++|+.. .+. ++++.+.+. +++.+.+.+... .++.+.
T Consensus 252 ~~~pallvsSTs--wTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGK------GPlkE~Y~~~I~~~~~~~v~~~ 323 (444)
T KOG2941|consen 252 PERPALLVSSTS--WTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGK------GPLKEKYSQEIHEKNLQHVQVC 323 (444)
T ss_pred cCCCeEEEecCC--CCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCC------CchhHHHHHHHHHhcccceeee
Confidence 446678886533 2345566667777752 222 456666554 566666554332 556554
Q ss_pred -ecc---chhhhhcCCCcceEEeccCch-----hHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcC
Q 010617 373 -SWA---PQLRVLNHPSIACFLSHCGWN-----STMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIIT 443 (506)
Q Consensus 373 -~~v---pq~~lL~h~~v~~~ItHgG~~-----sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~ 443 (506)
.|+ ++-.+|+-++.+..+|-.-.| -|..-.-+|+|++.+-+-. --..|++. --|.... +
T Consensus 324 tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkc----l~ELVkh~-eNGlvF~-------D 391 (444)
T KOG2941|consen 324 TPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKC----LDELVKHG-ENGLVFE-------D 391 (444)
T ss_pred ecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecchh----HHHHHhcC-CCceEec-------c
Confidence 886 466799889988888776655 4677788899988765532 22334442 4466664 6
Q ss_pred HHHHHHHHHHHhC
Q 010617 444 REEIKNKVDQVLG 456 (506)
Q Consensus 444 ~~~l~~ai~~vl~ 456 (506)
.++|++.+.-++.
T Consensus 392 s~eLa~ql~~lf~ 404 (444)
T KOG2941|consen 392 SEELAEQLQMLFK 404 (444)
T ss_pred HHHHHHHHHHHHh
Confidence 8999999998887
No 152
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=90.49 E-value=0.79 Score=39.60 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=43.2
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHh
Q 010617 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (506)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 49 (506)
|++.+|++.+.++-+|-.-..-++..|..+|++|+++...-..+.+.+.
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~ 49 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDA 49 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 8999999999999999999999999999999999999887665555444
No 153
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=90.07 E-value=1.1 Score=39.37 Aligned_cols=102 Identities=21% Similarity=0.153 Sum_probs=50.9
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHHHHHHhCcHH
Q 010617 13 AQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGK 92 (506)
Q Consensus 13 ~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (506)
..|=-.-+..|+++|+++||+|+++++........ . ........... ........+.. ...
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~-----------~-~~~~~~~~~~~--~~~~~~~~~~~-----~~~ 71 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEE-----------E-LVKIFVKIPYP--IRKRFLRSFFF-----MRR 71 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SS-----------T-EEEE---TT-S--STSS--HHHHH-----HHH
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchh-----------h-ccceeeeeecc--cccccchhHHH-----HHH
Confidence 34666788999999999999999998754432221 1 11111110000 01111111111 123
Q ss_pred HHHHHHHHhcCCCCCccEEEecCCcc-hHHHHHHHcCCceEEEccchHH
Q 010617 93 LEELIEEINSREDEKIDCFIADGNIG-WSMEIAKKMNVRGAVFWPSSAA 140 (506)
Q Consensus 93 ~~~ll~~l~~~~~~~~DlvV~D~~~~-~~~~~A~~lgIP~v~~~~~~~~ 140 (506)
+..++++ .++|+|-+-.... +...++.. ++|.+...+....
T Consensus 72 ~~~~i~~------~~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~~~ 113 (177)
T PF13439_consen 72 LRRLIKK------EKPDIVHIHGPPAFWIALLACR-KVPIVYTIHGPYF 113 (177)
T ss_dssp HHHHHHH------HT-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HHH-
T ss_pred HHHHHHH------cCCCeEEecccchhHHHHHhcc-CCCEEEEeCCCcc
Confidence 5555665 6899995554333 33333333 9999997776553
No 154
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=89.75 E-value=3.3 Score=41.16 Aligned_cols=146 Identities=16% Similarity=0.147 Sum_probs=81.1
Q ss_pred cccEEEEcCcccccccccccCCcee-eecccccCCCCCCCCCCCccccchhhhh---hhcCCCCceEEEEeCcc---ccC
Q 010617 250 AVNFHFCNSTYELESEAFTTFPELL-PIGPLLASNRLGNTAGYFWCEDSNCLKW---LDQQQPSSVVYVSFGSF---TIL 322 (506)
Q Consensus 250 ~~~~~l~ns~~~le~~~~~~~p~v~-~VGpl~~~~~~~~~~~~~~~~~~~l~~~---l~~~~~~~vV~vs~GS~---~~~ 322 (506)
..|+++++.+..+. .-+|++ ..|+++.-.... ..++-..| +... +++.|-|-.|-. ...
T Consensus 97 ~FDlvi~p~HD~~~-----~~~Nvl~t~ga~~~i~~~~--------l~~a~~~~~~~~~~l-~~p~~avLIGG~s~~~~~ 162 (311)
T PF06258_consen 97 PFDLVIVPEHDRLP-----RGPNVLPTLGAPNRITPER--------LAEAAAAWAPRLAAL-PRPRVAVLIGGDSKHYRW 162 (311)
T ss_pred ccCEEEECcccCcC-----CCCceEecccCCCcCCHHH--------HHHHHHhhhhhhccC-CCCeEEEEECcCCCCccc
Confidence 67888888875442 235664 477777654432 11212223 3322 345555555532 334
Q ss_pred CHHH----HHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhc--CCeEEE---eccchhhhhcCCCcceEEecc
Q 010617 323 DQVQ----FQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVA--ARGQMI---SWAPQLRVLNHPSIACFLSHC 393 (506)
Q Consensus 323 ~~~~----~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~--~n~~v~---~~vpq~~lL~h~~v~~~ItHg 393 (506)
+.+. +..+...++..+..+.++..... ....-..+.+... ..+.+. +.=|+..+|+.++. +|.-+
T Consensus 163 ~~~~~~~l~~~l~~~~~~~~~~~~vttSRRT----p~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~--i~VT~ 236 (311)
T PF06258_consen 163 DEEDAERLLDQLAALAAAYGGSLLVTTSRRT----PPEAEAALRELLKDNPGVYIWDGTGENPYLGFLAAADA--IVVTE 236 (311)
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEEcCCCC----cHHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHhCCE--EEEcC
Confidence 5553 33444444666666666665441 1111122222332 223232 23367788987776 66666
Q ss_pred Cc-hhHHHHHHcCCcEEeccCcc
Q 010617 394 GW-NSTMEGVSNGIPFLCWPYFG 415 (506)
Q Consensus 394 G~-~sv~eal~~GvP~v~~P~~~ 415 (506)
.. +=+.||+..|+|+.++|.-.
T Consensus 237 DSvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 237 DSVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred ccHHHHHHHHHcCCCEEEecCCC
Confidence 65 77899999999999999876
No 155
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=88.35 E-value=3.4 Score=43.44 Aligned_cols=100 Identities=12% Similarity=0.099 Sum_probs=64.6
Q ss_pred eccchhhh---hcCCCcceEEe---ccCc-hhHHHHHHcCCc----EEeccCcccchhhHHhhhccceeeeEeecCCCCC
Q 010617 373 SWAPQLRV---LNHPSIACFLS---HCGW-NSTMEGVSNGIP----FLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGI 441 (506)
Q Consensus 373 ~~vpq~~l---L~h~~v~~~It---HgG~-~sv~eal~~GvP----~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~ 441 (506)
..+++.++ ++.+++ |+. +=|+ .++.||+++|+| +|+--+.+- +.. ++-|..+++
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~----~~~----l~~gllVnP----- 406 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA----AQE----LNGALLVNP----- 406 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCC----hHH----hCCcEEECC-----
Confidence 55667654 556666 775 3465 588899999999 665544431 121 234667754
Q ss_pred cCHHHHHHHHHHHhCCh--HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 010617 442 ITREEIKNKVDQVLGNQ--DFKARALELKEKAMSSVREGGSSYKTFQNFLQWV 492 (506)
Q Consensus 442 ~~~~~l~~ai~~vl~d~--~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~ 492 (506)
.+.++++++|.++|.++ +-+++.+++.+.+.+ -+...-.++|++.+
T Consensus 407 ~d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l 454 (456)
T TIGR02400 407 YDIDGMADAIARALTMPLEEREERHRAMMDKLRK-----NDVQRWREDFLSDL 454 (456)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHh
Confidence 57999999999999754 566666666666654 34444455555544
No 156
>PLN02939 transferase, transferring glycosyl groups
Probab=88.18 E-value=22 Score=40.57 Aligned_cols=91 Identities=10% Similarity=0.154 Sum_probs=57.5
Q ss_pred cCCeEEEeccchh---hhhcCCCcceEEecc---C-chhHHHHHHcCCcEEeccCcc--cchhh--HHhh-hccceeeeE
Q 010617 366 AARGQMISWAPQL---RVLNHPSIACFLSHC---G-WNSTMEGVSNGIPFLCWPYFG--DQFLN--ERYI-CDFWKVGLK 433 (506)
Q Consensus 366 ~~n~~v~~~vpq~---~lL~h~~v~~~ItHg---G-~~sv~eal~~GvP~v~~P~~~--DQ~~n--a~rv-~~~lG~G~~ 433 (506)
.+++.+..+.+.. .+++.+++ ||.-. | -.+++||+++|+|.|+....+ |-..+ ...+ ++ -+.|..
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~e-g~NGfL 912 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVE-LRNGFT 912 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccC-CCceEE
Confidence 3567787877764 47866666 77532 2 258999999999998876543 32211 1111 12 156777
Q ss_pred eecCCCCCcCHHHHHHHHHHHhC----ChHHHHHH
Q 010617 434 FDRDEGGIITREEIKNKVDQVLG----NQDFKARA 464 (506)
Q Consensus 434 l~~~~~~~~~~~~l~~ai~~vl~----d~~~r~~a 464 (506)
++. .+++++.++|.+++. |+..+++.
T Consensus 913 f~~-----~D~eaLa~AL~rAL~~~~~dpe~~~~L 942 (977)
T PLN02939 913 FLT-----PDEQGLNSALERAFNYYKRKPEVWKQL 942 (977)
T ss_pred ecC-----CCHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 753 478899999988764 55444433
No 157
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=87.10 E-value=10 Score=31.50 Aligned_cols=44 Identities=25% Similarity=0.370 Sum_probs=36.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHH
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 48 (506)
||++.+.++-.|...+.-++..|.++||+|.+.......+.+.+
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~ 44 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVE 44 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 57888999999999999999999999999988876554444433
No 158
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=86.21 E-value=13 Score=34.01 Aligned_cols=101 Identities=15% Similarity=0.163 Sum_probs=61.9
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC---C--cchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCcc
Q 010617 2 SRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNT---D--YNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRN 76 (506)
Q Consensus 2 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~---~--~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 76 (506)
.+-.|.++...+.|-....+.+|-+.+.+|++|.++=- . .....+-+. .+++.+.....+..-.. .
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~-------l~~v~~~~~g~~~~~~~--~ 91 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEF-------GGGVEFHVMGTGFTWET--Q 91 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhc-------CCCcEEEECCCCCcccC--C
Confidence 45678899999999999999999999999999988722 1 122222221 13788887765432211 1
Q ss_pred CHHHHHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcc
Q 010617 77 DLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG 118 (506)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~ 118 (506)
+..+- .......+....+.+.+ .++|+||.|-...
T Consensus 92 ~~~e~----~~~~~~~~~~a~~~l~~---~~ydlvVLDEi~~ 126 (191)
T PRK05986 92 DRERD----IAAAREGWEEAKRMLAD---ESYDLVVLDELTY 126 (191)
T ss_pred CcHHH----HHHHHHHHHHHHHHHhC---CCCCEEEEehhhH
Confidence 11111 12222333334444444 7899999997543
No 159
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=85.46 E-value=9.5 Score=38.01 Aligned_cols=42 Identities=24% Similarity=0.284 Sum_probs=33.5
Q ss_pred CCEEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 010617 3 RPRVLVMPA-PAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHK 44 (506)
Q Consensus 3 ~~~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 44 (506)
.+||+|++. |+-|-..-..++|-.|++.|..|.+++++..+.
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhs 43 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHS 43 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Confidence 367887764 455998889999999999998888888876553
No 160
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=84.99 E-value=4.1 Score=42.52 Aligned_cols=134 Identities=9% Similarity=0.133 Sum_probs=81.1
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhhCC-CCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEE-eccc--hhhhhcCC
Q 010617 309 SSVVYVSFGSFTILDQVQFQELALGLELCK-RPFLWVVRPDITTDANDRYPEGFQERVAARGQMI-SWAP--QLRVLNHP 384 (506)
Q Consensus 309 ~~vV~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~-~~vp--q~~lL~h~ 384 (506)
+.++++| +.+.++.+....+.++ .++=+....+ -...|. .+ ++. +|+.+. ++.+ -.+++..+
T Consensus 283 ~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te----~s~kL~-~L-~~y-~nvvly~~~~~~~l~~ly~~~ 348 (438)
T TIGR02919 283 KQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTE----MSSKLM-SL-DKY-DNVKLYPNITTQKIQELYQTC 348 (438)
T ss_pred ccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCc----ccHHHH-HH-Hhc-CCcEEECCcChHHHHHHHHhc
Confidence 4577775 2556666666655544 3443322221 001111 12 233 777766 6676 33799999
Q ss_pred CcceEEeccC--chhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCChH-HH
Q 010617 385 SIACFLSHCG--WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQD-FK 461 (506)
Q Consensus 385 ~v~~~ItHgG--~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~~-~r 461 (506)
++-+-|+||+ ..++.||+.+|+|++..=..... ..+.. . |..... -+.+++.++|.++|.|++ ++
T Consensus 349 dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~----~~~i~--~-g~l~~~-----~~~~~m~~~i~~lL~d~~~~~ 416 (438)
T TIGR02919 349 DIYLDINHGNEILNAVRRAFEYNLLILGFEETAHN----RDFIA--S-ENIFEH-----NEVDQLISKLKDLLNDPNQFR 416 (438)
T ss_pred cEEEEccccccHHHHHHHHHHcCCcEEEEecccCC----ccccc--C-CceecC-----CCHHHHHHHHHHHhcCHHHHH
Confidence 9988999987 48999999999999965433211 11111 1 444432 368999999999999985 44
Q ss_pred HHHHHHH
Q 010617 462 ARALELK 468 (506)
Q Consensus 462 ~~a~~l~ 468 (506)
++..+-+
T Consensus 417 ~~~~~q~ 423 (438)
T TIGR02919 417 ELLEQQR 423 (438)
T ss_pred HHHHHHH
Confidence 4444333
No 161
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=84.85 E-value=3.3 Score=41.00 Aligned_cols=41 Identities=27% Similarity=0.355 Sum_probs=33.0
Q ss_pred CEEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 010617 4 PRVLVMP-APAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHK 44 (506)
Q Consensus 4 ~~il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 44 (506)
||++|+. -|+-|-..-..++|-.++++|++|.+++++..+.
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 4677666 4555999999999999999999999999987765
No 162
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=83.87 E-value=42 Score=32.20 Aligned_cols=87 Identities=16% Similarity=0.273 Sum_probs=55.5
Q ss_pred CCeEEEeccch---hhhhcCCCcceEEec---cCch-hHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCC
Q 010617 367 ARGQMISWAPQ---LRVLNHPSIACFLSH---CGWN-STMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEG 439 (506)
Q Consensus 367 ~n~~v~~~vpq---~~lL~h~~v~~~ItH---gG~~-sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~ 439 (506)
+++.+.+++++ ..+++.+++ ++.- .|.| ++.||+++|+|++..... .....+.+. +.|. +..
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~----~~~e~~~~~-~~g~-~~~--- 325 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDVG----GIPEVVEDG-ETGL-LVP--- 325 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCCC----ChHHHhcCC-CceE-ecC---
Confidence 66777888883 345665655 5555 3554 469999999999765543 233334331 2466 332
Q ss_pred CCcCHHHHHHHHHHHhCChHHHHHHH
Q 010617 440 GIITREEIKNKVDQVLGNQDFKARAL 465 (506)
Q Consensus 440 ~~~~~~~l~~ai~~vl~d~~~r~~a~ 465 (506)
....+++.+++..++.+.+.++...
T Consensus 326 -~~~~~~~~~~i~~~~~~~~~~~~~~ 350 (381)
T COG0438 326 -PGDVEELADALEQLLEDPELREELG 350 (381)
T ss_pred -CCCHHHHHHHHHHHhcCHHHHHHHH
Confidence 1268999999999998874444444
No 163
>PRK05973 replicative DNA helicase; Provisional
Probab=83.57 E-value=9 Score=36.40 Aligned_cols=45 Identities=27% Similarity=0.386 Sum_probs=38.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhh
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESL 50 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~ 50 (506)
+++...|+.|-..-.+.++...+++|..|.|++.+...+.+.+..
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~ 111 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRL 111 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHH
Confidence 566778899999999999999999999999999988776665543
No 164
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=83.54 E-value=5.7 Score=38.23 Aligned_cols=90 Identities=18% Similarity=0.261 Sum_probs=52.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh-HHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHH
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHK-RVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLI 82 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~-~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 82 (506)
|+||++. ++|. -..|++.|.++||+|+..+...... .+...+ +...+. ..+ +
T Consensus 1 m~ILvlG--GT~e---gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g--------~~~v~~--g~l-------~----- 53 (256)
T TIGR00715 1 MTVLLMG--GTVD---SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQ--------ALTVHT--GAL-------D----- 53 (256)
T ss_pred CeEEEEe--chHH---HHHHHHHHHhCCCeEEEEEccCCccccccccC--------CceEEE--CCC-------C-----
Confidence 4566654 4442 6789999999999998877655443 222210 111110 111 1
Q ss_pred HHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcc-h------HHHHHHHcCCceEEE
Q 010617 83 EKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG-W------SMEIAKKMNVRGAVF 134 (506)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~-~------~~~~A~~lgIP~v~~ 134 (506)
...+.+++.+ .++|+|| |...+ + +..+++.+|||++.+
T Consensus 54 -------~~~l~~~l~~------~~i~~VI-DAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 54 -------PQELREFLKR------HSIDILV-DATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred -------HHHHHHHHHh------cCCCEEE-EcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 0113344555 7889766 44444 3 567899999999996
No 165
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=83.51 E-value=14 Score=35.52 Aligned_cols=114 Identities=16% Similarity=0.130 Sum_probs=60.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCC--CCCCCCCccCHHH
Q 010617 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPD--GMEPWEDRNDLGK 80 (506)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~ 80 (506)
|||||+.= --.=|---+.+|+++|.+.| +|+++.+...+....... .....+++..+.. ......-...+..
T Consensus 5 ~M~ILltN-DDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ai----t~~~pl~~~~~~~~~~~~~y~v~GTPaD 78 (257)
T PRK13932 5 KPHILVCN-DDGIEGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAM----TLGVPLRIKEYQKNNRFFGYTVSGTPVD 78 (257)
T ss_pred CCEEEEEC-CCCCCCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCcccc----cCCCCeEEEEEccCCCceEEEEcCcHHH
Confidence 67887654 22223345778899998888 799988877665443322 1223455544431 1000000011111
Q ss_pred HHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCC----------c---chHHHHHHHcCCceEEEcc
Q 010617 81 LIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGN----------I---GWSMEIAKKMNVRGAVFWP 136 (506)
Q Consensus 81 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~----------~---~~~~~~A~~lgIP~v~~~~ 136 (506)
. +.--+..+-. .+||+||+-.. . .++..-|..+|||.+.++-
T Consensus 79 C-----------V~lal~~~~~---~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 79 C-----------IKVALSHILP---EKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred H-----------HHHHHHhhcC---CCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 1 1111222222 57999997542 1 2456667778999999874
No 166
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=82.63 E-value=27 Score=30.97 Aligned_cols=98 Identities=19% Similarity=0.186 Sum_probs=58.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEE---EeCC--cchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHH
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTF---VNTD--YNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLG 79 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~---~~~~--~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (506)
-|.+.+.++.|-....+.+|-+.+.+|++|.+ +-.. .....+-+.+ +++.+.....+..-.. .+..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-------~~v~~~~~g~~~~~~~--~~~~ 74 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERL-------PNIEIHRMGRGFFWTT--ENDE 74 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhC-------CCcEEEECCCCCccCC--CChH
Confidence 46688889999999999999999999999999 4442 2222222221 4788887765432221 1121
Q ss_pred HHHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcc
Q 010617 80 KLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG 118 (506)
Q Consensus 80 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~ 118 (506)
+.. ......++...+.+.. .++|+||.|-...
T Consensus 75 ~~~----~~a~~~~~~a~~~~~~---~~~dLlVLDEi~~ 106 (159)
T cd00561 75 EDI----AAAAEGWAFAKEAIAS---GEYDLVILDEINY 106 (159)
T ss_pred HHH----HHHHHHHHHHHHHHhc---CCCCEEEEechHh
Confidence 111 1122223333333333 7899999997643
No 167
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=82.32 E-value=13 Score=39.18 Aligned_cols=72 Identities=13% Similarity=0.086 Sum_probs=46.9
Q ss_pred Eeccchhhh---hcCCCcceEEe---ccCc-hhHHHHHHcCCc----EEeccCcccchhhHHhhhccceeeeEeecCCCC
Q 010617 372 ISWAPQLRV---LNHPSIACFLS---HCGW-NSTMEGVSNGIP----FLCWPYFGDQFLNERYICDFWKVGLKFDRDEGG 440 (506)
Q Consensus 372 ~~~vpq~~l---L~h~~v~~~It---HgG~-~sv~eal~~GvP----~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~ 440 (506)
.+++++.++ ++.+++ ||. +-|+ .++.||+++|+| +|+--..+ - ... ..-|..+++
T Consensus 346 ~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G-~----~~~---~~~g~lv~p---- 411 (460)
T cd03788 346 YRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG-A----AEE---LSGALLVNP---- 411 (460)
T ss_pred eCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc-c----hhh---cCCCEEECC----
Confidence 367787754 666666 663 3455 578999999999 44432222 1 111 134666654
Q ss_pred CcCHHHHHHHHHHHhCCh
Q 010617 441 IITREEIKNKVDQVLGNQ 458 (506)
Q Consensus 441 ~~~~~~l~~ai~~vl~d~ 458 (506)
.+.++++++|.+++.++
T Consensus 412 -~d~~~la~ai~~~l~~~ 428 (460)
T cd03788 412 -YDIDEVADAIHRALTMP 428 (460)
T ss_pred -CCHHHHHHHHHHHHcCC
Confidence 47999999999999865
No 168
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=82.24 E-value=13 Score=34.27 Aligned_cols=107 Identities=18% Similarity=0.270 Sum_probs=66.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHH
Q 010617 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLI 82 (506)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 82 (506)
+.+|++.+.++-.|-....-++..|..+|++|+++...-..+.+.+.... .+..++.+.......
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~-----~~~d~v~lS~~~~~~---------- 146 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKE-----HKPDILGLSALMTTT---------- 146 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----cCCCEEEEecccccc----------
Confidence 46899999999999999999999999999999998776555444443321 134444444322211
Q ss_pred HHHHHhCcHHHHHHHHHHhcCCC-CCccEEEecCCcchHHHHHHHcCCceEE
Q 010617 83 EKCLQVMPGKLEELIEEINSRED-EKIDCFIADGNIGWSMEIAKKMNVRGAV 133 (506)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~-~~~DlvV~D~~~~~~~~~A~~lgIP~v~ 133 (506)
...+..+++.++.... .++.++|.-.. .....++.+|.=.+.
T Consensus 147 -------~~~~~~~i~~lr~~~~~~~~~i~vGG~~--~~~~~~~~~GaD~~~ 189 (201)
T cd02070 147 -------MGGMKEVIEALKEAGLRDKVKVMVGGAP--VNQEFADEIGADGYA 189 (201)
T ss_pred -------HHHHHHHHHHHHHCCCCcCCeEEEECCc--CCHHHHHHcCCcEEE
Confidence 1224555666655320 13445555532 234688888865554
No 169
>PHA02542 41 41 helicase; Provisional
Probab=81.16 E-value=11 Score=39.94 Aligned_cols=43 Identities=9% Similarity=0.323 Sum_probs=36.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHH
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 48 (506)
|++..-|+.|-..-.+.+|...++.|+.|.|++-+...+.+..
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~~ 235 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIAK 235 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHH
Confidence 5567788999999999999999999999999999877765544
No 170
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=79.80 E-value=13 Score=35.91 Aligned_cols=41 Identities=10% Similarity=0.127 Sum_probs=33.1
Q ss_pred EEEeccchhhhhcCCCcceEEeccCchhHHHHHHcCCcEEeccC
Q 010617 370 QMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPY 413 (506)
Q Consensus 370 ~v~~~vpq~~lL~h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~ 413 (506)
.+.+-++-.++|.+++. +||-.+. .-.||+.+|+|++++..
T Consensus 186 ~~~~~~~~~~Ll~~s~~--VvtinSt-vGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 186 IIDDDVNLYELLEQSDA--VVTINST-VGLEALLHGKPVIVFGR 226 (269)
T ss_pred EECCCCCHHHHHHhCCE--EEEECCH-HHHHHHHcCCceEEecC
Confidence 34477888899988777 8888654 78999999999999763
No 171
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=79.44 E-value=16 Score=28.75 Aligned_cols=80 Identities=20% Similarity=0.218 Sum_probs=47.4
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHHHHHHhCcHHHHHHHHH
Q 010617 20 LLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELIEE 99 (506)
Q Consensus 20 ~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 99 (506)
++.+++.|.+.|++|. .++...+.+++. |+.....-.....+ . + .+++.
T Consensus 2 ~~~~~~~l~~lG~~i~--AT~gTa~~L~~~---------Gi~~~~~~~ki~~~----~-------------~---~i~~~ 50 (90)
T smart00851 2 LVELAKRLAELGFELV--ATGGTAKFLREA---------GLPVKTLHPKVHGG----I-------------L---AILDL 50 (90)
T ss_pred HHHHHHHHHHCCCEEE--EccHHHHHHHHC---------CCcceeccCCCCCC----C-------------H---HHHHH
Confidence 4689999999999983 454566777765 55432111101000 0 0 13334
Q ss_pred HhcCCCCCccEEEecCCc---------chHHHHHHHcCCceEE
Q 010617 100 INSREDEKIDCFIADGNI---------GWSMEIAKKMNVRGAV 133 (506)
Q Consensus 100 l~~~~~~~~DlvV~D~~~---------~~~~~~A~~lgIP~v~ 133 (506)
++. .++|+||.-..- ..-..+|...|||+++
T Consensus 51 i~~---g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~T 90 (90)
T smart00851 51 IKN---GEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGAT 90 (90)
T ss_pred hcC---CCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCeeC
Confidence 443 899999985431 1355678888999863
No 172
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=78.05 E-value=23 Score=32.52 Aligned_cols=106 Identities=15% Similarity=0.143 Sum_probs=67.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHH
Q 010617 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLI 82 (506)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 82 (506)
+.+|++.+.++-.|-....-++..|..+|++|+++...-..+.+.+.... .+..++.+.-.....
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~-----~~pd~v~lS~~~~~~---------- 148 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKK-----EKPLMLTGSALMTTT---------- 148 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH-----cCCCEEEEccccccC----------
Confidence 46899999999999999999999999999999999887666555554322 144444444322222
Q ss_pred HHHHHhCcHHHHHHHHHHhcCC-CCCccEEEecCCcchHHHHHHHcCCceE
Q 010617 83 EKCLQVMPGKLEELIEEINSRE-DEKIDCFIADGNIGWSMEIAKKMNVRGA 132 (506)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~-~~~~DlvV~D~~~~~~~~~A~~lgIP~v 132 (506)
...++++++.++..+ ..++-++|.-... ...+|+.+|.=.+
T Consensus 149 -------~~~~~~~i~~l~~~~~~~~v~i~vGG~~~--~~~~~~~~gad~~ 190 (197)
T TIGR02370 149 -------MYGQKDINDKLKEEGYRDSVKFMVGGAPV--TQDWADKIGADVY 190 (197)
T ss_pred -------HHHHHHHHHHHHHcCCCCCCEEEEEChhc--CHHHHHHhCCcEE
Confidence 122455566666532 1235566655433 3457777775443
No 173
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=77.72 E-value=38 Score=31.02 Aligned_cols=38 Identities=18% Similarity=0.485 Sum_probs=29.5
Q ss_pred CCEEEEEc--CCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010617 3 RPRVLVMP--APAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (506)
Q Consensus 3 ~~~il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 40 (506)
++|++.++ -++-|-..-...||..|+++|++|.++=.+
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 46666444 345588899999999999999999988544
No 174
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=77.62 E-value=15 Score=35.35 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=35.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhh
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESL 50 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~ 50 (506)
++|..-|+.|...-..++|..++++|++|.++..+..+ .+.+.+
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~-sl~~~~ 46 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH-SLSDSF 46 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc-cHHHHh
Confidence 34555777799999999999999999999999887653 555443
No 175
>PRK06849 hypothetical protein; Provisional
Probab=75.39 E-value=18 Score=37.14 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=28.9
Q ss_pred CC-CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 010617 1 MS-RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (506)
Q Consensus 1 m~-~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 42 (506)
|+ +++||++-. ...-.+.+++.|.++||+|+++.....
T Consensus 1 ~~~~~~VLI~G~----~~~~~l~iar~l~~~G~~Vi~~d~~~~ 39 (389)
T PRK06849 1 MNTKKTVLITGA----RAPAALELARLFHNAGHTVILADSLKY 39 (389)
T ss_pred CCCCCEEEEeCC----CcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 55 678887742 223589999999999999999977643
No 176
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=75.35 E-value=6.9 Score=31.24 Aligned_cols=84 Identities=19% Similarity=0.200 Sum_probs=48.9
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCC-CCccCHHHHHHHHHHhCcHHHHHHHH
Q 010617 20 LLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPW-EDRNDLGKLIEKCLQVMPGKLEELIE 98 (506)
Q Consensus 20 ~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~ 98 (506)
++.+|+.|.+.||++ +.++...+.+++. |+....+-...... ....+. .+.++++
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~~~---------Gi~~~~v~~~~~~~~~~~g~~-------------~i~~~i~ 57 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLKEH---------GIEVTEVVNKIGEGESPDGRV-------------QIMDLIK 57 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHHHT---------T--EEECCEEHSTG-GGTHCH-------------HHHHHHH
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHHHc---------CCCceeeeeecccCccCCchh-------------HHHHHHH
Confidence 578999999999665 5576777888876 67644443211111 000011 2334444
Q ss_pred HHhcCCCCCccEEEecCCcch---------HHHHHHHcCCceEE
Q 010617 99 EINSREDEKIDCFIADGNIGW---------SMEIAKKMNVRGAV 133 (506)
Q Consensus 99 ~l~~~~~~~~DlvV~D~~~~~---------~~~~A~~lgIP~v~ 133 (506)
. .++|+||....... -..+|...+||+++
T Consensus 58 ~------~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~T 95 (95)
T PF02142_consen 58 N------GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLFT 95 (95)
T ss_dssp T------TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEEC
T ss_pred c------CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCcC
Confidence 4 89999998764432 24678888999863
No 177
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=75.07 E-value=56 Score=29.39 Aligned_cols=97 Identities=10% Similarity=0.142 Sum_probs=57.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE---eCC--cchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCH
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFV---NTD--YNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDL 78 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~---~~~--~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 78 (506)
--|.+++..+.|-..-.+.+|-+.+.+|++|.++ -.. .....+-+. .++.++....+..-.. .+.
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~--------~~~~~~~~g~g~~~~~--~~~ 75 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEP--------HGVEFQVMGTGFTWET--QNR 75 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHh--------cCcEEEECCCCCeecC--CCc
Confidence 3577888899999999999999999999999654 332 112112121 1688887776543221 111
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCc
Q 010617 79 GKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNI 117 (506)
Q Consensus 79 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~ 117 (506)
.+.. ......++...+.+.. .++|+||.|-..
T Consensus 76 ~~~~----~~~~~~~~~a~~~l~~---~~~DlvVLDEi~ 107 (173)
T TIGR00708 76 EADT----AIAKAAWQHAKEMLAD---PELDLVLLDELT 107 (173)
T ss_pred HHHH----HHHHHHHHHHHHHHhc---CCCCEEEehhhH
Confidence 1111 1122223333333333 789999999754
No 178
>PRK08506 replicative DNA helicase; Provisional
Probab=74.34 E-value=21 Score=37.75 Aligned_cols=44 Identities=11% Similarity=0.242 Sum_probs=36.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHh
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 49 (506)
+++...|+.|-..-.+.+|...++.|+.|.|++.+.....+...
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~R 238 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLMLR 238 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHHH
Confidence 45677889999999999999998899999999998777655543
No 179
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=74.12 E-value=24 Score=32.95 Aligned_cols=37 Identities=22% Similarity=0.413 Sum_probs=30.8
Q ss_pred EEEEEcCC--CccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010617 5 RVLVMPAP--AQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (506)
Q Consensus 5 ~il~~~~~--~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 41 (506)
+|++++.+ +-|...-..+|+.+|+++|+.|.++-.+-
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~Di 41 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDI 41 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCc
Confidence 56666654 44999999999999999999999997764
No 180
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=74.08 E-value=12 Score=35.73 Aligned_cols=101 Identities=19% Similarity=0.180 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCC-CCCCCCCccCHHHHHHHHHHhCcHHHH
Q 010617 16 HVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPD-GMEPWEDRNDLGKLIEKCLQVMPGKLE 94 (506)
Q Consensus 16 H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (506)
|---+.+|+++|. .+++|+++.+...+..+...+ .....++...+.. .+....+..| ...-.+.
T Consensus 12 ~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~sl----Tl~~Plr~~~~~~~~~av~GTPaD----------CV~lal~ 76 (252)
T COG0496 12 HAPGIRALARALR-EGADVTVVAPDREQSGASHSL----TLHEPLRVRQVDNGAYAVNGTPAD----------CVILGLN 76 (252)
T ss_pred CCHHHHHHHHHHh-hCCCEEEEccCCCCccccccc----ccccCceeeEeccceEEecCChHH----------HHHHHHH
Confidence 4445677888887 999999999988876664432 1112333333322 1110011111 1111234
Q ss_pred HHHHHHhcCCCCCccEEEecCCc-------------chHHHHHHHcCCceEEEccc
Q 010617 95 ELIEEINSREDEKIDCFIADGNI-------------GWSMEIAKKMNVRGAVFWPS 137 (506)
Q Consensus 95 ~ll~~l~~~~~~~~DlvV~D~~~-------------~~~~~~A~~lgIP~v~~~~~ 137 (506)
.++++ .+||+||+-... .+|+.=|..+|||.+.++-.
T Consensus 77 ~l~~~------~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 77 ELLKE------PRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred HhccC------CCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 44443 569999975431 24566677889999997654
No 181
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=73.50 E-value=24 Score=39.56 Aligned_cols=107 Identities=15% Similarity=0.100 Sum_probs=65.9
Q ss_pred EEeccchhh---hhcCCCcceEEec---cCc-hhHHHHHHcCCc---EEeccCcccchhhHHhhhccceeeeEeecCCCC
Q 010617 371 MISWAPQLR---VLNHPSIACFLSH---CGW-NSTMEGVSNGIP---FLCWPYFGDQFLNERYICDFWKVGLKFDRDEGG 440 (506)
Q Consensus 371 v~~~vpq~~---lL~h~~v~~~ItH---gG~-~sv~eal~~GvP---~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~ 440 (506)
+.+++++.+ +++.+++ |+.- -|+ .++.||+++|+| .+++.-+. .-+. + +.-|+.+++
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~---G~~~---~-l~~~llv~P---- 412 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMA---GAAA---E-LAEALLVNP---- 412 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEeccc---chhH---H-hCcCeEECC----
Confidence 346788775 5556666 6654 354 588999999775 22222211 1111 2 233677765
Q ss_pred CcCHHHHHHHHHHHhCCh--HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHhcc
Q 010617 441 IITREEIKNKVDQVLGNQ--DFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTNA 496 (506)
Q Consensus 441 ~~~~~~l~~ai~~vl~d~--~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~ 496 (506)
.+.++++++|.+++.++ +-+++.+++.+.+++ -+...-+++|++.+.+..
T Consensus 413 -~d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~~-----~~~~~w~~~~l~~l~~~~ 464 (726)
T PRK14501 413 -NDIEGIAAAIKRALEMPEEEQRERMQAMQERLRR-----YDVHKWASDFLDELREAA 464 (726)
T ss_pred -CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHH
Confidence 57999999999999854 455555555555543 355677777777777654
No 182
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=72.81 E-value=42 Score=34.29 Aligned_cols=42 Identities=26% Similarity=0.409 Sum_probs=34.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHH
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVV 47 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 47 (506)
+++.-.|+.|-..-++.+|..++++|..|.+++.+...+.+.
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~ 126 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIK 126 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHH
Confidence 445667788999999999999999999999999877665554
No 183
>PRK08760 replicative DNA helicase; Provisional
Probab=72.78 E-value=14 Score=39.14 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=35.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcchhHHHHh
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYNHKRVVES 49 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~v~~~ 49 (506)
|++..-|+.|-..-.+.+|...+. .|+.|.|++.+...+.+...
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~R 276 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMR 276 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHH
Confidence 456778899999999999998875 59999999998776555443
No 184
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=72.43 E-value=29 Score=32.73 Aligned_cols=44 Identities=18% Similarity=0.425 Sum_probs=35.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCcchhHHHHh
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAKH-GFRVTFVNTDYNHKRVVES 49 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~v~~~ 49 (506)
+++...|+.|-..-++.++..++.+ |+.|.|++.+...+.+...
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r 60 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQR 60 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHH
Confidence 3456677889999999999999887 9999999998877655543
No 185
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=71.92 E-value=45 Score=32.75 Aligned_cols=117 Identities=19% Similarity=0.246 Sum_probs=69.3
Q ss_pred CCEEE-EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhc------CCCCCCCeEEEecCCCCCCCCCc
Q 010617 3 RPRVL-VMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQG------KNYLGEQIHLVSIPDGMEPWEDR 75 (506)
Q Consensus 3 ~~~il-~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~ 75 (506)
+++++ +.-.|+-|-=.-.-.|.+.|.++||+|-++.-++.....-.+... .....+|+-+.+++..-
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG------ 123 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRG------ 123 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCc------
Confidence 34444 777889999999999999999999999999776654332221100 00112344334433211
Q ss_pred cCHHHHHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcc--hHHHHHHHcCCceEEEccc
Q 010617 76 NDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG--WSMEIAKKMNVRGAVFWPS 137 (506)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~--~~~~~A~~lgIP~v~~~~~ 137 (506)
.+.. ......+.+.-|.. ..+|+||++..-. .=..+++...+=.++..|.
T Consensus 124 -~lGG--------lS~at~~~i~~ldA---aG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg 175 (323)
T COG1703 124 -TLGG--------LSRATREAIKLLDA---AGYDVIIVETVGVGQSEVDIANMADTFLVVMIPG 175 (323)
T ss_pred -cchh--------hhHHHHHHHHHHHh---cCCCEEEEEecCCCcchhHHhhhcceEEEEecCC
Confidence 1111 12223444555555 7899999996433 3456777777666665544
No 186
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=71.66 E-value=59 Score=27.17 Aligned_cols=43 Identities=23% Similarity=0.362 Sum_probs=36.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHH
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVV 47 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 47 (506)
||++.+.++-.|..-..-++.-|..+|++|.+.......+.+.
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~ 43 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIV 43 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHH
Confidence 5788888999999999999999999999999998865444443
No 187
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=71.66 E-value=7.3 Score=36.93 Aligned_cols=98 Identities=7% Similarity=0.073 Sum_probs=53.7
Q ss_pred CCceEEEEeCcc---ccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeE-EEeccc---hhhh
Q 010617 308 PSSVVYVSFGSF---TILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQ-MISWAP---QLRV 380 (506)
Q Consensus 308 ~~~vV~vs~GS~---~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~-v~~~vp---q~~l 380 (506)
+++.|.+..|+. ...+.+.+..+++.+.+.+.++++..+.... ....-..+.+..+.++. +.+-.. ...+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~e~~al 180 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQ---EKEIADQIAAGLQNPVINLAGKTSLRELAAL 180 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHH---HHHHHHHHHTTHTTTTEEETTTS-HHHHHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHH---HHHHHHHHHHhcccceEeecCCCCHHHHHHH
Confidence 466888888876 3457889999999998888776655544300 00000011111122222 333222 3368
Q ss_pred hcCCCcceEEeccCchhHHHHHHcCCcEEec
Q 010617 381 LNHPSIACFLSHCGWNSTMEGVSNGIPFLCW 411 (506)
Q Consensus 381 L~h~~v~~~ItHgG~~sv~eal~~GvP~v~~ 411 (506)
++++++ +|+. ..|.++=|.+.|+|+|++
T Consensus 181 i~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 181 ISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 877776 8886 678899999999999987
No 188
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=71.36 E-value=27 Score=36.27 Aligned_cols=44 Identities=18% Similarity=0.362 Sum_probs=36.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCcchhHHHHh
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLA-KHGFRVTFVNTDYNHKRVVES 49 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~v~~~ 49 (506)
+++...|+.|-..-.+.+|..++ +.|+.|.|++.+...+.+...
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~R 241 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGER 241 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHH
Confidence 45667889999999999998887 679999999998766655443
No 189
>PRK05595 replicative DNA helicase; Provisional
Probab=70.73 E-value=22 Score=37.22 Aligned_cols=44 Identities=16% Similarity=0.341 Sum_probs=35.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCcchhHHHHh
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLA-KHGFRVTFVNTDYNHKRVVES 49 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~v~~~ 49 (506)
+++...|+.|-..-.+.+|..++ +.|+.|.|++.+...+.+...
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~R 248 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAYK 248 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHHH
Confidence 44667889999999999999876 579999999998776555543
No 190
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=70.35 E-value=7.4 Score=32.64 Aligned_cols=39 Identities=8% Similarity=0.075 Sum_probs=27.3
Q ss_pred CEEEEEcCCCcc---CHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 010617 4 PRVLVMPAPAQG---HVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (506)
Q Consensus 4 ~~il~~~~~~~G---H~~p~l~La~~L~~rGh~Vt~~~~~~~ 42 (506)
|||+|+.-|-.+ .-.-.++|+.+-.+|||+|.++.....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 578887766554 456789999999999999999988643
No 191
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=70.26 E-value=13 Score=37.75 Aligned_cols=111 Identities=13% Similarity=0.208 Sum_probs=66.2
Q ss_pred cCCeEEE-eccchhhhhcCCCcceEEeccCchhHHHHHHcCCcEEeccCcccchhhHHh----hhccceeeeEeecCCCC
Q 010617 366 AARGQMI-SWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERY----ICDFWKVGLKFDRDEGG 440 (506)
Q Consensus 366 ~~n~~v~-~~vpq~~lL~h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~r----v~~~lG~G~~l~~~~~~ 440 (506)
.+++... +..+-.++|..+++ +||=- ...+.|.++.++|++....-.|.+...+- ..+ ...|..
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~-~~pg~~------- 319 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEE-DLPGPI------- 319 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTT-SSSS-E-------
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHh-hCCCce-------
Confidence 4566655 55678899988777 99987 45889999999999987766666533211 011 122222
Q ss_pred CcCHHHHHHHHHHHhCCh-HHHHHHHHHHHHHHhhhhcCCChHHHHHHHH
Q 010617 441 IITREEIKNKVDQVLGNQ-DFKARALELKEKAMSSVREGGSSYKTFQNFL 489 (506)
Q Consensus 441 ~~~~~~l~~ai~~vl~d~-~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~ 489 (506)
.-+.++|.++|..++.+. .++++.++..+++-.. ..|.+.+.+.++|
T Consensus 320 ~~~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~Dg~s~eri~~~I 367 (369)
T PF04464_consen 320 VYNFEELIEAIENIIENPDEYKEKREKFRDKFFKY--NDGNSSERIVNYI 367 (369)
T ss_dssp ESSHHHHHHHHTTHHHHHHHTHHHHHHHHHHHSTT----S-HHHHHHHHH
T ss_pred eCCHHHHHHHHHhhhhCCHHHHHHHHHHHHHhCCC--CCchHHHHHHHHH
Confidence 247899999999998765 4566677777777542 4565555555544
No 192
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.11 E-value=20 Score=35.11 Aligned_cols=92 Identities=16% Similarity=0.170 Sum_probs=57.0
Q ss_pred eccchhhhhcCCCcceEEeccCchhHHH-HHHcCCcEEeccCcccchh--hHHhhhccceeeeEeecCCCCCcCHHHHHH
Q 010617 373 SWAPQLRVLNHPSIACFLSHCGWNSTME-GVSNGIPFLCWPYFGDQFL--NERYICDFWKVGLKFDRDEGGIITREEIKN 449 (506)
Q Consensus 373 ~~vpq~~lL~h~~v~~~ItHgG~~sv~e-al~~GvP~v~~P~~~DQ~~--na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ 449 (506)
.|-...++|.++++ .|--. ||..| ++--|+|+|.+|-.+-|+. -|.|=.+-||..+.+.. -.+.+-..
T Consensus 301 sqqsfadiLH~ada--algmA--GTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-----~~aq~a~~ 371 (412)
T COG4370 301 SQQSFADILHAADA--ALGMA--GTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-----PEAQAAAQ 371 (412)
T ss_pred eHHHHHHHHHHHHH--HHHhc--cchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-----CchhhHHH
Confidence 55555556655444 33222 34444 5678999999999988864 34554444677777753 23444445
Q ss_pred HHHHHhCChHHHHHHH-HHHHHHHh
Q 010617 450 KVDQVLGNQDFKARAL-ELKEKAMS 473 (506)
Q Consensus 450 ai~~vl~d~~~r~~a~-~l~~~~~~ 473 (506)
+..+++.|+++..+++ .=++++-+
T Consensus 372 ~~q~ll~dp~r~~air~nGqrRiGq 396 (412)
T COG4370 372 AVQELLGDPQRLTAIRHNGQRRIGQ 396 (412)
T ss_pred HHHHHhcChHHHHHHHhcchhhccC
Confidence 5556999998888777 44455544
No 193
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=69.86 E-value=1.1e+02 Score=30.63 Aligned_cols=82 Identities=11% Similarity=0.074 Sum_probs=59.0
Q ss_pred CCeEEE-eccch---hhhhcCCCcceEEec--cCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCC
Q 010617 367 ARGQMI-SWAPQ---LRVLNHPSIACFLSH--CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGG 440 (506)
Q Consensus 367 ~n~~v~-~~vpq---~~lL~h~~v~~~ItH--gG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~ 440 (506)
+|+.+. +++|- .++|+.++++.|.+. =|.|+++-.|+.|+|+++- .+..--.-+++. |+=+...- +
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~----~~np~~~~l~~~-~ipVlf~~---d 316 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS----RDNPFWQDLKEQ-GIPVLFYG---D 316 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe----cCChHHHHHHhC-CCeEEecc---c
Confidence 467654 77774 478989998777764 5899999999999999853 222233345553 77666553 6
Q ss_pred CcCHHHHHHHHHHHhC
Q 010617 441 IITREEIKNKVDQVLG 456 (506)
Q Consensus 441 ~~~~~~l~~ai~~vl~ 456 (506)
.++.+.|+++=+++..
T Consensus 317 ~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 317 ELDEALVREAQRQLAN 332 (360)
T ss_pred cCCHHHHHHHHHHHhh
Confidence 7999999998887764
No 194
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=69.48 E-value=37 Score=32.42 Aligned_cols=100 Identities=19% Similarity=0.081 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCC--CCCCCCCccCHHHHHHHHHHhCcHHHHH
Q 010617 18 IPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPD--GMEPWEDRNDLGKLIEKCLQVMPGKLEE 95 (506)
Q Consensus 18 ~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (506)
--+.+|+++|.+.| +|+++.+...+..+.... .....+++..++. +.....-...+.... .-.+..
T Consensus 14 ~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ai----t~~~pl~~~~~~~~~~~~~~~v~GTPaDcv-------~~gl~~ 81 (244)
T TIGR00087 14 PGIRALYQALKELG-EVTVVAPARQRSGTGHSL----TLFEPLRVGQVKVKNGAHIYAVDGTPTDCV-------ILGINE 81 (244)
T ss_pred HhHHHHHHHHHhCC-CEEEEeCCCCccccccCc----CCCCCeEEEEeccCCCccEEEEcCcHHHHH-------HHHHHH
Confidence 45778899999888 899999987776554432 1223455555431 110000001111111 111222
Q ss_pred HHHHHhcCCCCCccEEEecCCc-------------chHHHHHHHcCCceEEEcc
Q 010617 96 LIEEINSREDEKIDCFIADGNI-------------GWSMEIAKKMNVRGAVFWP 136 (506)
Q Consensus 96 ll~~l~~~~~~~~DlvV~D~~~-------------~~~~~~A~~lgIP~v~~~~ 136 (506)
++ . .+||+||+-... .++..-|..+|||.+.++-
T Consensus 82 l~----~---~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 82 LM----P---EVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred hc----c---CCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 22 2 578999965432 2355667778999999864
No 195
>PRK08006 replicative DNA helicase; Provisional
Probab=69.29 E-value=27 Score=36.93 Aligned_cols=44 Identities=11% Similarity=0.217 Sum_probs=35.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcchhHHHHh
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYNHKRVVES 49 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~v~~~ 49 (506)
|++..-|+.|-....+.+|...+. .|+.|.|++.+...+.+...
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~R 271 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMR 271 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHH
Confidence 456778999999999999999874 69999999998766555433
No 196
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=69.22 E-value=6.6 Score=33.34 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=35.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHh
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 49 (506)
+||++...|+.+=.. ...+.++|.++|++|.++.++...+.+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhh
Confidence 477776666655555 999999999999999999998887777665
No 197
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=68.41 E-value=48 Score=31.98 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=39.4
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCC
Q 010617 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGME 70 (506)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~ 70 (506)
|.++||+++.+++...-. .++++|.++|++|.++......+... ...+++..-+|.+..
T Consensus 1 ~~~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~~~~~~--------~l~~~DgLvipGGfs 59 (261)
T PRK01175 1 MESIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDLAAERK--------SVSDYDCLVIPGGFS 59 (261)
T ss_pred CCCCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeecccccccc--------chhhCCEEEECCCCC
Confidence 778899999998886443 55788989999999887643211100 013566677776643
No 198
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=68.15 E-value=13 Score=32.21 Aligned_cols=47 Identities=30% Similarity=0.318 Sum_probs=39.4
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHH
Q 010617 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVV 47 (506)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 47 (506)
|++.||++.+.+..||=.-..-+++.|+..|.+|.....-...+.+.
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v 56 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAV 56 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHH
Confidence 46899999999988999999999999999999999876654444333
No 199
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=67.92 E-value=20 Score=33.14 Aligned_cols=105 Identities=15% Similarity=0.114 Sum_probs=62.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHHHH
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKC 85 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (506)
|++.-.|+.|.......||++|.+++|+|..++.++.. ++ ..+..++.. .+.+
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~---------------~i---~~DEslpi~---------ke~y 56 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLR---------------GI---LWDESLPIL---------KEVY 56 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhh---------------he---ecccccchH---------HHHH
Confidence 45666889999999999999999999998776553322 11 111111111 1111
Q ss_pred HHhC-cHHHHHHHHHHhcCCCCCccEEEecCCcch------HHHHHHHcCCceEEEccchHHHHH
Q 010617 86 LQVM-PGKLEELIEEINSREDEKIDCFIADGNIGW------SMEIAKKMNVRGAVFWPSSAASVA 143 (506)
Q Consensus 86 ~~~~-~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~------~~~~A~~lgIP~v~~~~~~~~~~~ 143 (506)
.+.. ....+-+..+ .+--+||+|..-+. ....|..++.++.++....+...+
T Consensus 57 res~~ks~~rlldSa------lkn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc 115 (261)
T COG4088 57 RESFLKSVERLLDSA------LKNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTC 115 (261)
T ss_pred HHHHHHHHHHHHHHH------hcceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHH
Confidence 1111 1122222222 22359999987652 346788999998887765554444
No 200
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=67.46 E-value=48 Score=27.01 Aligned_cols=84 Identities=18% Similarity=0.091 Sum_probs=55.9
Q ss_pred cCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHHHHHHhCcHHHH
Q 010617 15 GHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLE 94 (506)
Q Consensus 15 GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (506)
++-.-++.+++.|.+.|+++. .++...+.+.+. |+....+.... . ..+.+.
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~~---------gi~~~~v~~~~--~----------------~~~~i~ 60 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV--ATEGTAKYLQEA---------GIPVEVVNKVS--E----------------GRPNIV 60 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE--EchHHHHHHHHc---------CCeEEEEeecC--C----------------CchhHH
Confidence 355678899999999999984 455677777775 56544443211 0 112244
Q ss_pred HHHHHHhcCCCCCccEEEecCC-------cchHHHHHHHcCCceEE
Q 010617 95 ELIEEINSREDEKIDCFIADGN-------IGWSMEIAKKMNVRGAV 133 (506)
Q Consensus 95 ~ll~~l~~~~~~~~DlvV~D~~-------~~~~~~~A~~lgIP~v~ 133 (506)
+++.+ .++|+||.-.. ...-...|-..|||+++
T Consensus 61 ~~i~~------~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 61 DLIKN------GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred HHHHc------CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 45555 79999998432 23567788899999996
No 201
>PRK06321 replicative DNA helicase; Provisional
Probab=67.10 E-value=35 Score=36.11 Aligned_cols=44 Identities=11% Similarity=0.271 Sum_probs=35.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcchhHHHHh
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYNHKRVVES 49 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~v~~~ 49 (506)
|++..-|+.|-....+.+|...+. .|..|.|++.+.....+...
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~R 273 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHR 273 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHH
Confidence 456778899999999999999874 69999999998777655443
No 202
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=66.98 E-value=91 Score=29.94 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCcchhHHH
Q 010617 19 PLLEFSQCLAKHGFRVTFVNTDYNHKRVV 47 (506)
Q Consensus 19 p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 47 (506)
-+.+|+++|.+ +|+|+++.+...+....
T Consensus 15 Gl~aL~~~l~~-~~~V~VvAP~~~~Sg~g 42 (253)
T PRK13933 15 GINTLAELLSK-YHEVIIVAPENQRSASS 42 (253)
T ss_pred hHHHHHHHHHh-CCcEEEEccCCCCcccc
Confidence 37788898865 68999999887665443
No 203
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=66.97 E-value=35 Score=28.21 Aligned_cols=87 Identities=25% Similarity=0.188 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHHHHHHhCcHHHHH
Q 010617 16 HVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEE 95 (506)
Q Consensus 16 H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (506)
+-.-+..+++.|.+.|+.|. +++...+.+.+. ++....+....... ..+ .+.+.+
T Consensus 11 dk~~~~~~a~~l~~~G~~i~--aT~gTa~~L~~~---------gi~~~~v~~~~~~~--~~~------------~~~i~~ 65 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKLY--ATEGTADFLLEN---------GIPVTPVAWPSEEP--QND------------KPSLRE 65 (116)
T ss_pred cchhHHHHHHHHHHCCCEEE--EccHHHHHHHHc---------CCCceEeeeccCCC--CCC------------chhHHH
Confidence 44567899999999998883 566777777765 44433332110000 000 133555
Q ss_pred HHHHHhcCCCCCccEEEecCC---------cchHHHHHHHcCCceEE
Q 010617 96 LIEEINSREDEKIDCFIADGN---------IGWSMEIAKKMNVRGAV 133 (506)
Q Consensus 96 ll~~l~~~~~~~~DlvV~D~~---------~~~~~~~A~~lgIP~v~ 133 (506)
++.+ .++|+||.-.. ...-...|-.+|||+++
T Consensus 66 ~i~~------~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 66 LLAE------GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred HHHc------CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 5665 79999998432 23456778899999975
No 204
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=66.85 E-value=64 Score=31.89 Aligned_cols=79 Identities=14% Similarity=0.172 Sum_probs=55.3
Q ss_pred CCeEEE-eccc---hhhhhcCCCcceEEec--cCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCC
Q 010617 367 ARGQMI-SWAP---QLRVLNHPSIACFLSH--CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGG 440 (506)
Q Consensus 367 ~n~~v~-~~vp---q~~lL~h~~v~~~ItH--gG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~ 440 (506)
+|+.+. +++| +.++|+.++++.|+|+ =|.|+++-.|+.|+|+++-- +-+.+.. +.+ .|+-+..+. +
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqd-l~e-~gv~Vlf~~---d 277 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQD-LTE-QGLPVLFTG---D 277 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHH-HHh-CCCeEEecC---C
Confidence 677754 6666 5579999999888876 48899999999999999742 2222222 334 377776665 6
Q ss_pred CcCHHHHHHHHHH
Q 010617 441 IITREEIKNKVDQ 453 (506)
Q Consensus 441 ~~~~~~l~~ai~~ 453 (506)
.++...+.++=++
T Consensus 278 ~L~~~~v~e~~rq 290 (322)
T PRK02797 278 DLDEDIVREAQRQ 290 (322)
T ss_pred cccHHHHHHHHHH
Confidence 6788777776443
No 205
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=66.78 E-value=47 Score=30.85 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=26.7
Q ss_pred EEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEe
Q 010617 6 VLVMPAP-AQGHVIPLLEFSQCLAKHGFRVTFVN 38 (506)
Q Consensus 6 il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~ 38 (506)
|++.+.. .-|-..-.+.|++.|.++|++|.++-
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 4454433 45999999999999999999998875
No 206
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=66.69 E-value=20 Score=38.54 Aligned_cols=79 Identities=13% Similarity=0.031 Sum_probs=47.7
Q ss_pred chhhhhcCCCcceEEe---ccCc-hhHHHHHHcCCcEEeccCcc-cchhhHHhhhccceeeeEeecCCCC--CcCHHHHH
Q 010617 376 PQLRVLNHPSIACFLS---HCGW-NSTMEGVSNGIPFLCWPYFG-DQFLNERYICDFWKVGLKFDRDEGG--IITREEIK 448 (506)
Q Consensus 376 pq~~lL~h~~v~~~It---HgG~-~sv~eal~~GvP~v~~P~~~-DQ~~na~rv~~~lG~G~~l~~~~~~--~~~~~~l~ 448 (506)
+..+++..+++ +|. +=|+ -++.||+++|+|+|+....+ ..... ..+...-..|+.+....+. ..+.++|+
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~~r~~~~~~e~v~~La 543 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIVDRRFKSPDESVQQLT 543 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEecCCccchHHHHHHHH
Confidence 35567766666 665 4454 49999999999999977642 22222 1111100256666532211 23568889
Q ss_pred HHHHHHhCC
Q 010617 449 NKVDQVLGN 457 (506)
Q Consensus 449 ~ai~~vl~d 457 (506)
+++.++++.
T Consensus 544 ~~m~~~~~~ 552 (590)
T cd03793 544 QYMYEFCQL 552 (590)
T ss_pred HHHHHHhCC
Confidence 999998854
No 207
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=66.53 E-value=16 Score=30.23 Aligned_cols=44 Identities=27% Similarity=0.446 Sum_probs=36.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHH
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 48 (506)
|+++.+.+..-|-.-+..++..|.++||+|.++......+.+.+
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~ 45 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEELVE 45 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHH
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHH
Confidence 68888999999999999999999999999999966554444444
No 208
>PRK11823 DNA repair protein RadA; Provisional
Probab=66.37 E-value=39 Score=35.47 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=35.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHH
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVV 47 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 47 (506)
+++.-.|+.|-..-++.++..++++|..|.|++.+...+.+.
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~ 124 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIK 124 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHH
Confidence 456667788999999999999999999999999987666554
No 209
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=65.93 E-value=24 Score=39.95 Aligned_cols=104 Identities=13% Similarity=0.069 Sum_probs=67.0
Q ss_pred ccchh---hhhcCCCcceEEec---cCch-hHHHHHHcCCc---EEeccCcccchhhHHhhhccce-eeeEeecCCCCCc
Q 010617 374 WAPQL---RVLNHPSIACFLSH---CGWN-STMEGVSNGIP---FLCWPYFGDQFLNERYICDFWK-VGLKFDRDEGGII 442 (506)
Q Consensus 374 ~vpq~---~lL~h~~v~~~ItH---gG~~-sv~eal~~GvP---~v~~P~~~DQ~~na~rv~~~lG-~G~~l~~~~~~~~ 442 (506)
+++.. ++++.++| ||.- -|+| +..|++++|+| ++++.-+. ..+.. +| -|+.+++ .
T Consensus 363 ~v~~~el~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~---G~~~~----l~~~allVnP-----~ 428 (797)
T PLN03063 363 SVDFNYLCALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFA---GAGQS----LGAGALLVNP-----W 428 (797)
T ss_pred CCCHHHHHHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCc---Cchhh----hcCCeEEECC-----C
Confidence 44544 56666666 7754 3775 77899999999 45555332 11111 33 5777765 6
Q ss_pred CHHHHHHHHHHHhC-Ch-HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHhcc
Q 010617 443 TREEIKNKVDQVLG-NQ-DFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTNA 496 (506)
Q Consensus 443 ~~~~l~~ai~~vl~-d~-~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~ 496 (506)
+.++++++|.++|. ++ .-+++.+++.+.+++ -+...-.+.|++.+.+..
T Consensus 429 D~~~lA~AI~~aL~m~~~er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 429 NITEVSSAIKEALNMSDEERETRHRHNFQYVKT-----HSAQKWADDFMSELNDII 479 (797)
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHHHHh
Confidence 89999999999998 44 445556666666665 244566777777776554
No 210
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=65.73 E-value=9.6 Score=34.71 Aligned_cols=40 Identities=18% Similarity=0.256 Sum_probs=27.9
Q ss_pred CCCEEEEEcCCCccCHH------------HHHHHHHHHHhCCCeEEEEeCCc
Q 010617 2 SRPRVLVMPAPAQGHVI------------PLLEFSQCLAKHGFRVTFVNTDY 41 (506)
Q Consensus 2 ~~~~il~~~~~~~GH~~------------p~l~La~~L~~rGh~Vt~~~~~~ 41 (506)
+..|||+.+.|+.-.+. --..||+++..||++|+++..+.
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 44577777777665553 35789999999999999999874
No 211
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=65.42 E-value=38 Score=30.99 Aligned_cols=113 Identities=17% Similarity=0.113 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCcch-hHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHH---HHHHHHHhCcHHH
Q 010617 18 IPLLEFSQCLAKHGFRVTFVNTDYNH-KRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGK---LIEKCLQVMPGKL 93 (506)
Q Consensus 18 ~p~l~La~~L~~rGh~Vt~~~~~~~~-~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 93 (506)
.-...+.+.+.++|-+|.|+++.... ..+++.... .+..++. ..+..+ ...+... .+..+.......+
T Consensus 43 ~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~-----~~~~~i~--~rw~~G-~LTN~~~~~~~~~~~~~~~~~~~ 114 (193)
T cd01425 43 RLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAER-----TGSFYVN--GRWLGG-TLTNWKTIRKSIKRLKKLEKEKL 114 (193)
T ss_pred HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHH-----cCCeeec--CeecCC-cCCCHHHHHHHHHHHHHHHHHHH
Confidence 34455567777789999999887543 333332210 1222221 111111 1112111 1111111111222
Q ss_pred HHHHHHHhcCCCCCccEEEe-cCCcc-hHHHHHHHcCCceEEEccchH
Q 010617 94 EELIEEINSREDEKIDCFIA-DGNIG-WSMEIAKKMNVRGAVFWPSSA 139 (506)
Q Consensus 94 ~~ll~~l~~~~~~~~DlvV~-D~~~~-~~~~~A~~lgIP~v~~~~~~~ 139 (506)
+..+..+.... ..||+||+ |...- .+..=|.++|||.+.+.-+..
T Consensus 115 ~k~~~g~~~~~-~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn~ 161 (193)
T cd01425 115 EKNLGGIKDMF-RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTNC 161 (193)
T ss_pred HHhcccccccc-cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCCC
Confidence 33333322222 68999885 44333 688889999999999876543
No 212
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=65.06 E-value=13 Score=28.66 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=30.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFV 37 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~ 37 (506)
.-++++..+...|...+..+|+.|+++|+.|...
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3477888899999999999999999999999865
No 213
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=64.79 E-value=30 Score=32.27 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=36.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhh
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESL 50 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~ 50 (506)
-+++.-.|+.|-..-.+.++...+++|+.|.+++.+...+.+.+..
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~ 63 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYA 63 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHH
Confidence 3456666788998888999888888899999999988776665543
No 214
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=64.62 E-value=68 Score=34.08 Aligned_cols=46 Identities=11% Similarity=0.179 Sum_probs=39.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhh
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESL 50 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~ 50 (506)
-+|+.-.|+.|-..-.+.++.+.+++|..|.+++.++..+.+....
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~ 310 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNA 310 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHH
Confidence 4567777888999999999999999999999999998877766543
No 215
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=64.61 E-value=12 Score=34.33 Aligned_cols=44 Identities=11% Similarity=-0.042 Sum_probs=32.4
Q ss_pred CCCEEEEEcCCCccCHHH-HHHHHHHHHhCCCeEEEEeCCcchhHH
Q 010617 2 SRPRVLVMPAPAQGHVIP-LLEFSQCLAKHGFRVTFVNTDYNHKRV 46 (506)
Q Consensus 2 ~~~~il~~~~~~~GH~~p-~l~La~~L~~rGh~Vt~~~~~~~~~~v 46 (506)
+..||++.-.| .+..+- ...++++|.++||+|.++.++...+.+
T Consensus 4 ~~k~IllgVTG-siaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~ 48 (196)
T PRK08305 4 KGKRIGFGLTG-SHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTD 48 (196)
T ss_pred CCCEEEEEEcC-HHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHHh
Confidence 35677765544 444555 799999999999999999987766543
No 216
>PRK12342 hypothetical protein; Provisional
Probab=64.44 E-value=60 Score=31.20 Aligned_cols=32 Identities=6% Similarity=0.016 Sum_probs=25.1
Q ss_pred CCccEEEecCCcc------hHHHHHHHcCCceEEEccc
Q 010617 106 EKIDCFIADGNIG------WSMEIAKKMNVRGAVFWPS 137 (506)
Q Consensus 106 ~~~DlvV~D~~~~------~~~~~A~~lgIP~v~~~~~ 137 (506)
..||+|++-..+. -+..+|+.+|+|++++...
T Consensus 108 ~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 108 IGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred hCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 5699999755443 3889999999999996644
No 217
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=64.10 E-value=45 Score=34.26 Aligned_cols=102 Identities=25% Similarity=0.321 Sum_probs=66.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHHHH
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKC 85 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (506)
||+---|+-|--.=++.++..|+++| .|.+++.++....++-.-.+- ++ +. . ++. .+
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL-----~~-----~~----~----~l~----l~ 152 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRL-----GL-----PT----N----NLY----LL 152 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHh-----CC-----Cc----c----ceE----Ee
Confidence 45555778888899999999999999 999999998887764321110 11 11 0 000 00
Q ss_pred HHhCcHHHHHHHHHHhcCCCCCccEEEecCCcc-h--------------------HHHHHHHcCCceEEEcc
Q 010617 86 LQVMPGKLEELIEEINSREDEKIDCFIADGNIG-W--------------------SMEIAKKMNVRGAVFWP 136 (506)
Q Consensus 86 ~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~-~--------------------~~~~A~~lgIP~v~~~~ 136 (506)
....++++++.+.. .+||++|.|.... + ...+|+..||+.+.+.+
T Consensus 153 ---aEt~~e~I~~~l~~---~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGH 218 (456)
T COG1066 153 ---AETNLEDIIAELEQ---EKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGH 218 (456)
T ss_pred ---hhcCHHHHHHHHHh---cCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 11124555555555 8999999997432 1 23678888999888654
No 218
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=64.07 E-value=22 Score=31.56 Aligned_cols=56 Identities=14% Similarity=0.238 Sum_probs=44.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCC
Q 010617 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPD 67 (506)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~ 67 (506)
.+||.+.-.|+-|-..-++.+++.|.++|+.|-=+.+++..+.=... ||+.+++..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~---------GF~Ivdl~t 60 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRI---------GFKIVDLAT 60 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEe---------eeEEEEccC
Confidence 57899999999999999999999999999998877666555332222 788888763
No 219
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=63.51 E-value=1.1e+02 Score=29.56 Aligned_cols=37 Identities=11% Similarity=0.282 Sum_probs=28.4
Q ss_pred CEEE-EEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010617 4 PRVL-VMP-APAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (506)
Q Consensus 4 ~~il-~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 40 (506)
.|++ |.+ .|+-|-..-...||..|++.|++|.++=.+
T Consensus 103 ~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 103 RKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 4555 433 445588889999999999999999998443
No 220
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=63.38 E-value=43 Score=34.81 Aligned_cols=43 Identities=12% Similarity=0.232 Sum_probs=35.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHH
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVV 47 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 47 (506)
.|+|+-.++.|-..-...||..|.++|+.|.+++.+.++....
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~ 144 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAF 144 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHH
Confidence 3556777788999999999999999999999999987764333
No 221
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=63.19 E-value=17 Score=33.07 Aligned_cols=93 Identities=13% Similarity=0.115 Sum_probs=47.8
Q ss_pred CCccCHHHHHHHHHHHHhC--CCeEEEEeCCcch-hHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHHHHHHh
Q 010617 12 PAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYNH-KRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQV 88 (506)
Q Consensus 12 ~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~-~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (506)
.+-|-+.....|+++|.++ |+.|.+-++...- +...+... +.+...-+|-..+
T Consensus 29 ~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~------~~v~~~~~P~D~~------------------ 84 (186)
T PF04413_consen 29 ASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP------DRVDVQYLPLDFP------------------ 84 (186)
T ss_dssp SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G------GG-SEEE---SSH------------------
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC------CCeEEEEeCccCH------------------
Confidence 4568899999999999997 8988888764433 33433311 1222222332111
Q ss_pred CcHHHHHHHHHHhcCCCCCccEEEecCCcc--hHHHHHHHcCCceEEEcc
Q 010617 89 MPGKLEELIEEINSREDEKIDCFIADGNIG--WSMEIAKKMNVRGAVFWP 136 (506)
Q Consensus 89 ~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~--~~~~~A~~lgIP~v~~~~ 136 (506)
..++.+++. ++||++|.--... ..+..|++.|||.+.+.-
T Consensus 85 --~~~~rfl~~------~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 85 --WAVRRFLDH------WRPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp --HHHHHHHHH------H--SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred --HHHHHHHHH------hCCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 125556777 7889888655444 477788888999999754
No 222
>PRK05636 replicative DNA helicase; Provisional
Probab=62.65 E-value=21 Score=38.13 Aligned_cols=43 Identities=19% Similarity=0.352 Sum_probs=34.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCcchhHHHH
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLA-KHGFRVTFVNTDYNHKRVVE 48 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~v~~ 48 (506)
|++..-|+.|-..-.+.+|...+ +.|..|.|++.+.....+..
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~ 311 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVM 311 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHH
Confidence 45677889999999999998876 46899999999877655543
No 223
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=62.63 E-value=89 Score=34.84 Aligned_cols=38 Identities=26% Similarity=0.463 Sum_probs=30.0
Q ss_pred CCCCEEEEEcCCC-ccCHHHHHHHHHHHHhCCCeEEEEeC
Q 010617 1 MSRPRVLVMPAPA-QGHVIPLLEFSQCLAKHGFRVTFVNT 39 (506)
Q Consensus 1 m~~~~il~~~~~~-~GH~~p~l~La~~L~~rGh~Vt~~~~ 39 (506)
|.+ .|++.+... .|-..-.+.|++.|.++|.+|.++=+
T Consensus 1 m~k-~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKP 39 (684)
T PRK05632 1 MSR-SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKP 39 (684)
T ss_pred CCc-EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 434 456655444 59999999999999999999999875
No 224
>PRK09165 replicative DNA helicase; Provisional
Probab=62.63 E-value=36 Score=36.23 Aligned_cols=44 Identities=16% Similarity=0.241 Sum_probs=35.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC---------------CCeEEEEeCCcchhHHHHh
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAKH---------------GFRVTFVNTDYNHKRVVES 49 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~r---------------Gh~Vt~~~~~~~~~~v~~~ 49 (506)
+++..-|+.|-..-.+.+|...+.+ |..|.|++.+...+.+...
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R 278 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATR 278 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHH
Confidence 5567788999999999999988754 7899999998877666543
No 225
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=62.61 E-value=88 Score=27.41 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=23.9
Q ss_pred CCCccCHHHHHHHHHHHHhCCCeEEEE
Q 010617 11 APAQGHVIPLLEFSQCLAKHGFRVTFV 37 (506)
Q Consensus 11 ~~~~GH~~p~l~La~~L~~rGh~Vt~~ 37 (506)
.++-|...-.+.|++.|.++|.+|.++
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 455688999999999999999999997
No 226
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=62.51 E-value=24 Score=31.61 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=36.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHh
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 49 (506)
+++.-.|+.|-..-.+.++.+.++.|..|.|++.+...+.+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHH
Confidence 45666788899999999999999999999999998777665544
No 227
>PRK10867 signal recognition particle protein; Provisional
Probab=62.50 E-value=41 Score=35.11 Aligned_cols=42 Identities=14% Similarity=0.208 Sum_probs=35.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCcchhHH
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKH-GFRVTFVNTDYNHKRV 46 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~v 46 (506)
-|+|+-.++.|-..-...||..|+++ |+.|.+++.+.+....
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa 144 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAA 144 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHH
Confidence 35567777889999999999999999 9999999998766544
No 228
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=62.36 E-value=90 Score=29.97 Aligned_cols=43 Identities=14% Similarity=0.133 Sum_probs=27.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHH
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 48 (506)
||||+.==-+. |---+.+|+++|.+ +|+|+++.+...+.....
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg~g~ 43 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERSATGH 43 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCccccc
Confidence 35555431111 33447788888864 689999999877655544
No 229
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=61.49 E-value=75 Score=28.64 Aligned_cols=106 Identities=16% Similarity=0.096 Sum_probs=52.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCe--EEEEeCCcchhH-HHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHH
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFR--VTFVNTDYNHKR-VVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGK 80 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~--Vt~~~~~~~~~~-v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 80 (506)
|||+|+..+.. ..+..+.++|.+++|. |.++.+...... ...... .++....+.... ...
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~------~~~~~~~~~~~~------~~~-- 63 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIK------NGIPAQVADEKN------FQP-- 63 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHH------TTHHEEEHHGGG------SSS--
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEecccccccccccccc------CCCCEEeccccC------CCc--
Confidence 58887754443 5566778899999997 555544333322 221110 123222221110 000
Q ss_pred HHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCc-chHHHHHHHcCCceEEEccc
Q 010617 81 LIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNI-GWSMEIAKKMNVRGAVFWPS 137 (506)
Q Consensus 81 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~-~~~~~~A~~lgIP~v~~~~~ 137 (506)
.+...+.+.+.+++ .+||++|+-.+. ..-..+-......++-++++
T Consensus 64 -----~~~~~~~~~~~l~~------~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 64 -----RSENDEELLELLES------LNPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp -----HHHHHHHHHHHHHH------TT-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred -----hHhhhhHHHHHHHh------hccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 01112223444445 899999987653 34455557677777777665
No 230
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=61.47 E-value=54 Score=33.86 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=39.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhh
Q 010617 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESL 50 (506)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~ 50 (506)
+..|+++-.=+.|-..-+-.||..|.++|+.|.+++.+-++....+++
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL 147 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQL 147 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHH
Confidence 345667777788999999999999999999999999987775554444
No 231
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=60.83 E-value=40 Score=31.11 Aligned_cols=38 Identities=21% Similarity=0.388 Sum_probs=30.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010617 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (506)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 40 (506)
+.+|.+-..|+-|-.+.|+.=|+.|.++|.+|.+..-+
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 46889999999999999999999999999999987654
No 232
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=60.62 E-value=1.3e+02 Score=33.96 Aligned_cols=154 Identities=14% Similarity=0.226 Sum_probs=96.6
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCC------------------------CCCCCCChhhHHhh
Q 010617 310 SVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITT------------------------DANDRYPEGFQERV 365 (506)
Q Consensus 310 ~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~------------------------~~~~~lp~~~~~~~ 365 (506)
..+|+++=-+...+....+..++.+.+.|.++++.++.+... ...+.+++.-.+..
T Consensus 572 ~LtFvGlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~ 651 (972)
T KOG0202|consen 572 DLTFVGLVGILDPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDA 651 (972)
T ss_pred ceEEEEEeeccCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHH
Confidence 378887755555556667778888889999988888765110 01122333322223
Q ss_pred cCCeEEE-eccchhhhhcCCCcceEEeccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCH
Q 010617 366 AARGQMI-SWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITR 444 (506)
Q Consensus 366 ~~n~~v~-~~vpq~~lL~h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~ 444 (506)
..++.+. +--||.. --+.|+|+.---++.+ .+|--.-|-.++.+ .+|+..-. +.
T Consensus 652 ~~~~~vFaR~~P~HK----------------~kIVeaLq~~geivAM--TGDGVNDApALK~A-dIGIAMG~------~G 706 (972)
T KOG0202|consen 652 VRRVLVFARAEPQHK----------------LKIVEALQSRGEVVAM--TGDGVNDAPALKKA-DIGIAMGI------SG 706 (972)
T ss_pred hhcceEEEecCchhH----------------HHHHHHHHhcCCEEEe--cCCCccchhhhhhc-ccceeecC------Cc
Confidence 3333333 2334332 2367788777766654 57777777777774 88888753 34
Q ss_pred HHH-HHHHHHHhCChHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHhcc
Q 010617 445 EEI-KNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTNA 496 (506)
Q Consensus 445 ~~l-~~ai~~vl~d~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~ 496 (506)
.++ .+|-+=+|.|+.|.. +-.|+.||-.-++++.+||+++...+
T Consensus 707 TdVaKeAsDMVL~DDnFst--------IvaAVEEGr~IynNik~Fir~~lSsn 751 (972)
T KOG0202|consen 707 TDVAKEASDMVLADDNFST--------IVAAVEEGRAIYNNIKNFIRYLLSSN 751 (972)
T ss_pred cHhhHhhhhcEEecCcHHH--------HHHHHHHhHHHHHHHHHHHHHHHhhh
Confidence 444 445555688887754 44467778888999999999988543
No 233
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=60.55 E-value=15 Score=36.18 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=34.4
Q ss_pred CCCCEEE-EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 010617 1 MSRPRVL-VMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (506)
Q Consensus 1 m~~~~il-~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 42 (506)
|+|||++ |..=|+-|-..-...||-+|+++|++|.++-.+..
T Consensus 1 ~~~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q 43 (295)
T PRK13234 1 MSKLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPK 43 (295)
T ss_pred CCcceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence 8888877 55555668999999999999999999999955443
No 234
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=60.23 E-value=76 Score=29.26 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=21.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCC
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHG--FRVTFVNTD 40 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~ 40 (506)
+||+|+..+..+-+ .++.+++.+.+ +.|.++.+.
T Consensus 2 ~ki~vl~sg~gs~~---~~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 2 KRIVVLASGNGSNL---QAIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred ceEEEEEcCCChhH---HHHHHHHHcCCCCcEEEEEEec
Confidence 57887776554433 35666676654 778776444
No 235
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=59.97 E-value=44 Score=34.83 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=28.6
Q ss_pred CC-CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 010617 1 MS-RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (506)
Q Consensus 1 m~-~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 43 (506)
|. .||||++-.++.-| +|+.+|.+.++...+++.+.+.
T Consensus 1 ~~~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn~ 39 (426)
T PRK13789 1 MQVKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGNG 39 (426)
T ss_pred CCCCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCch
Confidence 65 58999998888777 6899999988665555555544
No 236
>PRK07004 replicative DNA helicase; Provisional
Probab=59.91 E-value=44 Score=35.24 Aligned_cols=44 Identities=14% Similarity=0.266 Sum_probs=35.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcchhHHHHh
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYNHKRVVES 49 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~v~~~ 49 (506)
+++..-|+.|-..-.+.+|..++. .|+.|.|++.+...+.+...
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~~R 260 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLAMR 260 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHH
Confidence 456778899999999999998874 69999999998777665443
No 237
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=59.89 E-value=57 Score=29.94 Aligned_cols=89 Identities=15% Similarity=0.192 Sum_probs=52.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHHHH
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKC 85 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (506)
|+|+-..+-|-..-...||..+..+|..|.+++.+.++....+++... ....++.+....... +....
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~-a~~l~vp~~~~~~~~-------~~~~~---- 71 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTY-AEILGVPFYVARTES-------DPAEI---- 71 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHH-HHHHTEEEEESSTTS-------CHHHH----
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHH-HHHhccccchhhcch-------hhHHH----
Confidence 345555667999999999999999999999999997764433332110 001266666543221 12211
Q ss_pred HHhCcHHHHHHHHHHhcCCCCCccEEEecCC
Q 010617 86 LQVMPGKLEELIEEINSREDEKIDCFIADGN 116 (506)
Q Consensus 86 ~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~ 116 (506)
+++.++.... .+.|+|++|..
T Consensus 72 -------~~~~l~~~~~---~~~D~vlIDT~ 92 (196)
T PF00448_consen 72 -------AREALEKFRK---KGYDLVLIDTA 92 (196)
T ss_dssp -------HHHHHHHHHH---TTSSEEEEEE-
T ss_pred -------HHHHHHHHhh---cCCCEEEEecC
Confidence 2223333333 67899999963
No 238
>PRK08840 replicative DNA helicase; Provisional
Probab=59.33 E-value=52 Score=34.73 Aligned_cols=44 Identities=11% Similarity=0.212 Sum_probs=35.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcchhHHHHh
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYNHKRVVES 49 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~v~~~ 49 (506)
|++..-|+.|-....+.+|...+. .|+.|.|++.+...+.+...
T Consensus 220 iviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql~~R 264 (464)
T PRK08840 220 IIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLMMR 264 (464)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHH
Confidence 556778899999999999999874 69999999998777655443
No 239
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=59.15 E-value=57 Score=34.29 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=34.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHH
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVV 47 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 47 (506)
+++.-.|+.|-..-++.++..++++|+.|.|++.++..+.+.
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~ 138 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIK 138 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHH
Confidence 445667788999999999999999999999999987665554
No 240
>PRK07773 replicative DNA helicase; Validated
Probab=59.00 E-value=52 Score=37.87 Aligned_cols=44 Identities=18% Similarity=0.328 Sum_probs=36.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCcchhHHHHh
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAKH-GFRVTFVNTDYNHKRVVES 49 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~v~~~ 49 (506)
|++..-|+.|-..-.+.+|...+.+ |..|.|++.+...+.+...
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~R 264 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVMR 264 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHH
Confidence 5577788999999999999998864 8899999998777665544
No 241
>PRK11519 tyrosine kinase; Provisional
Probab=58.80 E-value=65 Score=36.12 Aligned_cols=117 Identities=16% Similarity=0.211 Sum_probs=68.2
Q ss_pred CCEEEEEc--CCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhh------------hcCC--------CCCCCe
Q 010617 3 RPRVLVMP--APAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESL------------QGKN--------YLGEQI 60 (506)
Q Consensus 3 ~~~il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~------------~~~~--------~~~~~i 60 (506)
+.|+++++ .|+-|-..-...||..|++.|++|.++-.+.-...+.... .... ...+++
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~l 604 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANF 604 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCCE
Confidence 34666544 5677999999999999999999999996553322222111 1000 011334
Q ss_pred EEEecCCCCCCCCCccCHHHHHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcc----hHHHHHHHcCCceEEEc
Q 010617 61 HLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG----WSMEIAKKMNVRGAVFW 135 (506)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~----~~~~~A~~lgIP~v~~~ 135 (506)
.+.+-.. ...++.+++ ....+.++++.++ .++|+||.|.--. -+..++...+...+++-
T Consensus 605 ~~lp~g~------~~~~~~ell------~s~~~~~ll~~l~----~~yD~ViiDtpP~~~v~Da~~l~~~~d~~l~Vvr 667 (719)
T PRK11519 605 DLIPRGQ------VPPNPSELL------MSERFAELVNWAS----KNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVAR 667 (719)
T ss_pred EEEeCCC------CCCCHHHHh------hHHHHHHHHHHHH----hcCCEEEEeCCCcccchHHHHHHHHCCeEEEEEe
Confidence 3333221 112222222 1334677777776 4899999997432 26677888886665543
No 242
>PRK06904 replicative DNA helicase; Validated
Probab=58.68 E-value=48 Score=35.07 Aligned_cols=44 Identities=11% Similarity=0.197 Sum_probs=35.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcchhHHHHh
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYNHKRVVES 49 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~v~~~ 49 (506)
|++..-|+.|-....+.+|...+. .|+.|.|++.+...+.+...
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~~R 268 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMMR 268 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHH
Confidence 456778899999999999998875 59999999998777665543
No 243
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=58.41 E-value=55 Score=34.10 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=35.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcchhHHHH
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYNHKRVVE 48 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~v~~ 48 (506)
+++...|+.|-..-.+.+|..++. .|+.|.|++.+...+.+..
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~ 241 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAM 241 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHH
Confidence 456678889999999999999886 6999999999877766544
No 244
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=58.40 E-value=27 Score=34.95 Aligned_cols=35 Identities=14% Similarity=0.375 Sum_probs=31.0
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 010617 9 MPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (506)
Q Consensus 9 ~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 43 (506)
++.|+.|-.--...|++.|.++|++|.+++-.+-.
T Consensus 43 ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~ 77 (326)
T PF02606_consen 43 LTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGR 77 (326)
T ss_pred cccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 56789999999999999999999999999986554
No 245
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=58.34 E-value=91 Score=32.77 Aligned_cols=35 Identities=17% Similarity=0.352 Sum_probs=27.6
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeC
Q 010617 5 RVLVMPAP-AQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (506)
Q Consensus 5 ~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~ 39 (506)
+|++.... .-|-..-...|++.|+++|++|..+-+
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 45555433 448999999999999999999998855
No 246
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=58.32 E-value=66 Score=33.55 Aligned_cols=42 Identities=19% Similarity=0.259 Sum_probs=34.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCcchhHH
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLA-KHGFRVTFVNTDYNHKRV 46 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~v 46 (506)
.|+|+..++.|-..-...||..|. ++|..|.++..+.+....
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a 143 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAA 143 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHH
Confidence 355777788899999999999997 589999999998766543
No 247
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=58.13 E-value=2.2e+02 Score=28.91 Aligned_cols=82 Identities=20% Similarity=0.182 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHH-h-hCCCCEEEEEcCCCCCCCCCCCChhhHHh--hcCCeEEEeccchh---hhhcCCCcceEEeccCc
Q 010617 323 DQVQFQELALGL-E-LCKRPFLWVVRPDITTDANDRYPEGFQER--VAARGQMISWAPQL---RVLNHPSIACFLSHCGW 395 (506)
Q Consensus 323 ~~~~~~~~~~al-~-~~~~~~i~~~~~~~~~~~~~~lp~~~~~~--~~~n~~v~~~vpq~---~lL~h~~v~~~ItHgG~ 395 (506)
..+++..++.-+ . ..+.++++.-.+.. -..+ +...|+ +.+++.+.+-+|++ ++|...++ |++-.=.
T Consensus 209 GiDll~~iIp~vc~~~p~vrfii~GDGPk----~i~l-ee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSlT 281 (426)
T KOG1111|consen 209 GIDLLLEIIPSVCDKHPEVRFIIIGDGPK----RIDL-EEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDI--FLNTSLT 281 (426)
T ss_pred chHHHHHHHHHHHhcCCCeeEEEecCCcc----cchH-HHHHHHhhccCceEEecccchHHHHHHHhcCcE--EeccHHH
Confidence 456665555444 3 34456665543331 0111 122222 46889999999988 56777777 7765432
Q ss_pred ----hhHHHHHHcCCcEEec
Q 010617 396 ----NSTMEGVSNGIPFLCW 411 (506)
Q Consensus 396 ----~sv~eal~~GvP~v~~ 411 (506)
-++.||..+|.|+|..
T Consensus 282 Eafc~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 282 EAFCMVIVEAASCGLPVVST 301 (426)
T ss_pred HHHHHHHHHHHhCCCEEEEe
Confidence 3678999999999853
No 248
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=57.83 E-value=82 Score=30.19 Aligned_cols=99 Identities=12% Similarity=0.095 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHHHHHHhCcHHHHHH
Q 010617 17 VIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEEL 96 (506)
Q Consensus 17 ~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 96 (506)
.--+.+|+++|.+. |+|+++.+...+....... .....+++..+.+.. ..-...+.. ++.--
T Consensus 13 a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ai----t~~~pl~~~~~~~~~--~~v~GTPaD-----------cV~~g 74 (250)
T PRK00346 13 APGIRALAEALREL-ADVTVVAPDRERSGASHSL----TLTRPLRVEKVDNGF--YAVDGTPTD-----------CVHLA 74 (250)
T ss_pred ChhHHHHHHHHHhC-CCEEEEeCCCCCcCCcccc----cCCCCeEEEEecCCe--EEECCcHHH-----------HHHHH
Confidence 34578889999988 7999999987665554332 112234444442110 000011111 11111
Q ss_pred HHHHhcCCCCCccEEEecCC----------c---chHHHHHHHcCCceEEEcc
Q 010617 97 IEEINSREDEKIDCFIADGN----------I---GWSMEIAKKMNVRGAVFWP 136 (506)
Q Consensus 97 l~~l~~~~~~~~DlvV~D~~----------~---~~~~~~A~~lgIP~v~~~~ 136 (506)
+..+.. .+||+||+-.. . ..+..-|...|||.+.++-
T Consensus 75 l~~l~~---~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 75 LNGLLD---PKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred HHhhcc---CCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 222222 57999997542 1 2355667778999999864
No 249
>PRK05748 replicative DNA helicase; Provisional
Probab=57.51 E-value=50 Score=34.66 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=36.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcchhHHHHh
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYNHKRVVES 49 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~v~~~ 49 (506)
+++...|+.|-..-.+.+|...+. +|+.|.|++.+...+.+...
T Consensus 206 ivIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R 250 (448)
T PRK05748 206 IIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMR 250 (448)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHH
Confidence 556778899999999999999874 69999999998777665443
No 250
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=56.64 E-value=86 Score=30.12 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=32.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 43 (506)
+++.-.|+.|-..-.+.++...+++|..|.|++.+...
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPA 76 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCc
Confidence 45666778899999999999998999999999987544
No 251
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=55.97 E-value=28 Score=30.95 Aligned_cols=44 Identities=14% Similarity=0.161 Sum_probs=27.0
Q ss_pred HhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHH--H---HHHHc-CCceEEEcc
Q 010617 87 QVMPGKLEELIEEINSREDEKIDCFIADGNIGWSM--E---IAKKM-NVRGAVFWP 136 (506)
Q Consensus 87 ~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~--~---~A~~l-gIP~v~~~~ 136 (506)
......+..++++ .+||+||+-..+.... . ....+ ++|.+++.+
T Consensus 75 ~~~~~~l~~~l~~------~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 75 RLFARRLIRLLRE------FQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHHHhh------cCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 3334456666666 8999999998764333 1 12223 588877654
No 252
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=55.80 E-value=79 Score=30.51 Aligned_cols=100 Identities=9% Similarity=0.040 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhC---CCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHHHHHHhCcHHHH
Q 010617 18 IPLLEFSQCLAKH---GFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLE 94 (506)
Q Consensus 18 ~p~l~La~~L~~r---Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (506)
--+.+|+++|.+. |++|+++.+...+....... .....++...+.++. ..-...+.... .-.+.
T Consensus 14 ~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghai----T~~~pl~~~~~~~~~--yav~GTPaDCV-------~lal~ 80 (261)
T PRK13931 14 PGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCI----SYTHPMMIAELGPRR--FAAEGSPADCV-------LAALY 80 (261)
T ss_pred HhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccc----cCCCCeEEEEeCCCe--EEEcCchHHHH-------HHHHH
Confidence 3466777777663 47999999987665544332 112245554443210 00001111111 11122
Q ss_pred HHHHHHhcCCCCCccEEEecCC----------cc---hHHHHHHHcCCceEEEcc
Q 010617 95 ELIEEINSREDEKIDCFIADGN----------IG---WSMEIAKKMNVRGAVFWP 136 (506)
Q Consensus 95 ~ll~~l~~~~~~~~DlvV~D~~----------~~---~~~~~A~~lgIP~v~~~~ 136 (506)
.++.. .+||+||+-.. .. ++..-|..+|||.+.++.
T Consensus 81 ~~~~~------~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 81 DVMKD------APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred HhcCC------CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 33321 57999997432 22 355667778999999874
No 253
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=55.79 E-value=91 Score=27.60 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=22.1
Q ss_pred cceEEeccCc------hhHHHHHHcCCcEEecc
Q 010617 386 IACFLSHCGW------NSTMEGVSNGIPFLCWP 412 (506)
Q Consensus 386 v~~~ItHgG~------~sv~eal~~GvP~v~~P 412 (506)
..++++|+|- +.+.+|...++|+|++.
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3448888884 57899999999999986
No 254
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=55.07 E-value=49 Score=29.25 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=27.8
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 010617 10 PAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (506)
Q Consensus 10 ~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 42 (506)
+-|+.|-..-...||..|+++|++|.++=.+..
T Consensus 7 ~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q 39 (169)
T cd02037 7 GKGGVGKSTVAVNLALALAKLGYKVGLLDADIY 39 (169)
T ss_pred CCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 356679999999999999999999999866543
No 255
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=54.94 E-value=1.3e+02 Score=28.24 Aligned_cols=92 Identities=20% Similarity=0.313 Sum_probs=53.9
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCC------CCCCeEEEecCCCCCCCCCccCHHHHHHHHH
Q 010617 13 AQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNY------LGEQIHLVSIPDGMEPWEDRNDLGKLIEKCL 86 (506)
Q Consensus 13 ~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (506)
+.|--.-...++-.+...||+|++++++......-++-.+..+ ....+.|.++.-. +-+.. .
T Consensus 38 ~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~--~~~~~----------~ 105 (235)
T COG2874 38 GTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLE--PVNWG----------R 105 (235)
T ss_pred CccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccc--ccccC----------h
Confidence 5577788889999999999999999998755443332211111 1123344443211 10011 1
Q ss_pred HhCcHHHHHHHHHHhcCCCCCccEEEecCCcch
Q 010617 87 QVMPGKLEELIEEINSREDEKIDCFIADGNIGW 119 (506)
Q Consensus 87 ~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~ 119 (506)
+..+..++.+++.++. ++-|++|.|.+...
T Consensus 106 ~~~~~~L~~l~~~~k~---~~~dViIIDSls~~ 135 (235)
T COG2874 106 RSARKLLDLLLEFIKR---WEKDVIIIDSLSAF 135 (235)
T ss_pred HHHHHHHHHHHhhHHh---hcCCEEEEecccHH
Confidence 2223345555665554 77899999987664
No 256
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=54.55 E-value=72 Score=28.21 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=33.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHK 44 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 44 (506)
++++-.++.|-......++..|+++|.+|.++..+....
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~ 41 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP 41 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence 567777888999999999999999999999998876553
No 257
>PRK04328 hypothetical protein; Provisional
Probab=54.09 E-value=1.1e+02 Score=29.17 Aligned_cols=45 Identities=20% Similarity=0.152 Sum_probs=35.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHh
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 49 (506)
-+++.-.|+.|...-.+.++.+-+++|..+.+++.+...+.+.+.
T Consensus 25 ~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~ 69 (249)
T PRK04328 25 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRN 69 (249)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHH
Confidence 355666778899888888887777889999999998776655443
No 258
>PRK10818 cell division inhibitor MinD; Provisional
Probab=54.06 E-value=1.2e+02 Score=28.94 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=28.7
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010617 8 VMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (506)
Q Consensus 8 ~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 41 (506)
+-.-|+.|-..-...||..|+++|++|.++=.+.
T Consensus 8 ~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~ 41 (270)
T PRK10818 8 TSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDI 41 (270)
T ss_pred EeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 3346677999999999999999999999986655
No 259
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=53.44 E-value=22 Score=34.15 Aligned_cols=46 Identities=15% Similarity=0.278 Sum_probs=39.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHh
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 49 (506)
..++|+-.|+.|-.+=..++|.+|.++|+.|+|++.+.....+...
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 4678888888888888999999999999999999998877777654
No 260
>PRK09620 hypothetical protein; Provisional
Probab=53.05 E-value=32 Score=32.45 Aligned_cols=40 Identities=15% Similarity=0.100 Sum_probs=29.3
Q ss_pred CCCCEEEEEcCCCccCHH------------HHHHHHHHHHhCCCeEEEEeCC
Q 010617 1 MSRPRVLVMPAPAQGHVI------------PLLEFSQCLAKHGFRVTFVNTD 40 (506)
Q Consensus 1 m~~~~il~~~~~~~GH~~------------p~l~La~~L~~rGh~Vt~~~~~ 40 (506)
|+..+||+.+.|+.=.+. --..||++|.++|++|+++...
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 455678887776544432 2468999999999999999764
No 261
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=53.05 E-value=74 Score=34.08 Aligned_cols=27 Identities=19% Similarity=0.189 Sum_probs=22.9
Q ss_pred CCccEEEecCCcchHHHHHHHcCCceEEEc
Q 010617 106 EKIDCFIADGNIGWSMEIAKKMNVRGAVFW 135 (506)
Q Consensus 106 ~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~ 135 (506)
.+||++|.+. .+..+|+.+|||++.+.
T Consensus 436 ~~~DlliG~s---~~k~~a~~~giPlir~g 462 (515)
T TIGR01286 436 EPVDFLIGNS---YGKYIQRDTLVPLIRIG 462 (515)
T ss_pred cCCCEEEECc---hHHHHHHHcCCCEEEec
Confidence 7899999885 46788999999998864
No 262
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=52.92 E-value=71 Score=33.32 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=23.0
Q ss_pred CCccEEEecCCcchHHHHHHHcCCceEEEc
Q 010617 106 EKIDCFIADGNIGWSMEIAKKMNVRGAVFW 135 (506)
Q Consensus 106 ~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~ 135 (506)
.+||++|.+.. ...+|+++|||++.+.
T Consensus 371 ~~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 371 LKIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred cCCCEEEECch---hHHHHHHcCCCEEEec
Confidence 78999999953 5789999999998754
No 263
>PLN02470 acetolactate synthase
Probab=52.66 E-value=73 Score=34.73 Aligned_cols=81 Identities=9% Similarity=0.071 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEe--------ccchhhhhcCCCcceEEeccCc--
Q 010617 326 QFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMIS--------WAPQLRVLNHPSIACFLSHCGW-- 395 (506)
Q Consensus 326 ~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~--------~vpq~~lL~h~~v~~~ItHgG~-- 395 (506)
..+.+++.|++.|.+.|+-+.+. ...++-+.+.+ .++++++. ++-.-.-..+..++++++|.|-
T Consensus 15 ~a~~l~~~L~~~GV~~vFg~pG~----~~~~l~dal~~--~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~ 88 (585)
T PLN02470 15 GADILVEALEREGVDTVFAYPGG----ASMEIHQALTR--SNCIRNVLCRHEQGEVFAAEGYAKASGKVGVCIATSGPGA 88 (585)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCc----ccHHHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccH
Confidence 35668888888888888777655 11122122210 11233321 1211111222345568898884
Q ss_pred ----hhHHHHHHcCCcEEecc
Q 010617 396 ----NSTMEGVSNGIPFLCWP 412 (506)
Q Consensus 396 ----~sv~eal~~GvP~v~~P 412 (506)
+.+.+|...++|+|++.
T Consensus 89 ~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 89 TNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred HHHHHHHHHHHhcCCcEEEEe
Confidence 58899999999999985
No 264
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=51.74 E-value=1.6e+02 Score=25.49 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=31.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 41 (506)
|.++-.++.|-...+..++..|.++|++|.++..+.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 566777788999999999999999999999987653
No 265
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=51.70 E-value=1.2e+02 Score=29.27 Aligned_cols=32 Identities=6% Similarity=0.051 Sum_probs=24.9
Q ss_pred CCccEEEecCCc-----c-hHHHHHHHcCCceEEEccc
Q 010617 106 EKIDCFIADGNI-----G-WSMEIAKKMNVRGAVFWPS 137 (506)
Q Consensus 106 ~~~DlvV~D~~~-----~-~~~~~A~~lgIP~v~~~~~ 137 (506)
..||+|++-..+ . -+..+|+.||+|++++...
T Consensus 111 ~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 111 AGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred hCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 569999975433 2 4788999999999997654
No 266
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=51.60 E-value=71 Score=31.03 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=33.5
Q ss_pred CEEE-EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 010617 4 PRVL-VMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (506)
Q Consensus 4 ~~il-~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 43 (506)
++++ |+..++-|-..-...||..|+++|++|.++..+.+.
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r 112 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR 112 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence 4444 676777799999999999999999999999988654
No 267
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=51.45 E-value=89 Score=31.19 Aligned_cols=46 Identities=17% Similarity=0.288 Sum_probs=39.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhh
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESL 50 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~ 50 (506)
-|||+-.-+.|-..-+-.||..|.+.|+.|.++..+-++....+++
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL 186 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQL 186 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHH
Confidence 4567888899999999999999999999999999998876655554
No 268
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=51.23 E-value=83 Score=27.76 Aligned_cols=28 Identities=11% Similarity=0.240 Sum_probs=21.4
Q ss_pred cceEEeccC------chhHHHHHHcCCcEEeccC
Q 010617 386 IACFLSHCG------WNSTMEGVSNGIPFLCWPY 413 (506)
Q Consensus 386 v~~~ItHgG------~~sv~eal~~GvP~v~~P~ 413 (506)
..+++.|+| .+.+.+|...++|+|++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 344777766 3578899999999999863
No 269
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=51.17 E-value=68 Score=33.27 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=23.5
Q ss_pred CCccEEEecCCcchHHHHHHHcCCceEEEcc
Q 010617 106 EKIDCFIADGNIGWSMEIAKKMNVRGAVFWP 136 (506)
Q Consensus 106 ~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~ 136 (506)
.+||++|.. ..+..+|+++|||.+.+..
T Consensus 349 ~~pDl~Ig~---s~~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 349 YRPDLAIGT---TPLVQYAKEKGIPALYYTN 376 (416)
T ss_pred cCCCEEEeC---ChhhHHHHHhCCCEEEecC
Confidence 789999987 4577799999999998643
No 270
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=50.87 E-value=89 Score=30.70 Aligned_cols=52 Identities=12% Similarity=0.157 Sum_probs=36.5
Q ss_pred cceEEeccCchhHHHHHHc----CCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCC
Q 010617 386 IACFLSHCGWNSTMEGVSN----GIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGN 457 (506)
Q Consensus 386 v~~~ItHgG~~sv~eal~~----GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d 457 (506)
++++|+-||-||+.+++.. ++|++.+-.. .+|... ..+.+++.++|.+++.+
T Consensus 64 ~d~vi~~GGDGt~l~~~~~~~~~~~pilGIn~G--------------~lGFL~------~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 64 ADLAVVLGGDGTMLGIGRQLAPYGVPLIGINHG--------------RLGFIT------DIPLDDMQETLPPMLAG 119 (291)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEcCC--------------Cccccc------cCCHHHHHHHHHHHHcC
Confidence 3449999999999999774 6777755411 233333 25678888888888854
No 271
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=50.83 E-value=61 Score=25.45 Aligned_cols=57 Identities=18% Similarity=0.234 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhCChH----HHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHhccccCCCCCC
Q 010617 445 EEIKNKVDQVLGNQD----FKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTNALAHNSPVT 504 (506)
Q Consensus 445 ~~l~~ai~~vl~d~~----~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (506)
.+....++++++|.+ +|+.|.+..+++.+ +|.+..-.....+.-|.+-..+.|-|.+
T Consensus 16 ~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~---e~e~p~vRaAtaIsiLeeisnDPNmP~h 76 (93)
T COG1698 16 NQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNN---EGESPAVRAATAISILEEISNDPNMPLH 76 (93)
T ss_pred HHHHHHHHHHHccccccHHHHHHHHHHHHHHhC---CCCCchhHHHHHHHHHHHHhcCCCCchH
Confidence 445556677788874 55555555555555 4555544445555555555555666544
No 272
>CHL00175 minD septum-site determining protein; Validated
Probab=50.69 E-value=2.1e+02 Score=27.64 Aligned_cols=37 Identities=22% Similarity=0.503 Sum_probs=28.9
Q ss_pred EEEE-Ec-CCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010617 5 RVLV-MP-APAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (506)
Q Consensus 5 ~il~-~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 41 (506)
+++. +. -|+-|-..-...||.+|+++|++|.++=.+.
T Consensus 16 ~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~ 54 (281)
T CHL00175 16 RIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADI 54 (281)
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4553 33 4566889999999999999999999985543
No 273
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=50.38 E-value=1.7e+02 Score=32.95 Aligned_cols=39 Identities=18% Similarity=0.434 Sum_probs=30.7
Q ss_pred CCEEEEEc--CCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010617 3 RPRVLVMP--APAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (506)
Q Consensus 3 ~~~il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 41 (506)
+.|++.++ .|+-|-..-...||..|+..|++|.++=.+.
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~ 570 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 570 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 34666544 4566999999999999999999999996654
No 274
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=50.19 E-value=95 Score=27.89 Aligned_cols=99 Identities=20% Similarity=0.186 Sum_probs=46.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC-----cchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCH
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD-----YNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDL 78 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~-----~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 78 (506)
-.|.+.+..+.|-....+.+|-+-+-+|.+|.++=-= .....+-+.+ +++.+.....++...... ..
T Consensus 4 G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l-------~~~~~~~~g~~f~~~~~~-~~ 75 (172)
T PF02572_consen 4 GLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKL-------PNVEIERFGKGFVWRMNE-EE 75 (172)
T ss_dssp --EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGG-------T--EEEE--TT----GGG-HH
T ss_pred cEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhC-------CeEEEEEcCCcccccCCC-cH
Confidence 3577888888898887776666666677778777321 1112222222 468887777644332111 11
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcc
Q 010617 79 GKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG 118 (506)
Q Consensus 79 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~ 118 (506)
.+ .......++...+.+.+ .++|+||.|-...
T Consensus 76 ~~-----~~~~~~~~~~a~~~i~~---~~~dlvILDEi~~ 107 (172)
T PF02572_consen 76 ED-----RAAAREGLEEAKEAISS---GEYDLVILDEINY 107 (172)
T ss_dssp HH-----HHHHHHHHHHHHHHTT----TT-SEEEEETHHH
T ss_pred HH-----HHHHHHHHHHHHHHHhC---CCCCEEEEcchHH
Confidence 11 22333334444444444 7899999997543
No 275
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=49.51 E-value=1.3e+02 Score=25.88 Aligned_cols=91 Identities=14% Similarity=0.221 Sum_probs=51.5
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeE----EEecCCCCCCCCCccCHHHHHHHHHHhCcHHHHH
Q 010617 20 LLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIH----LVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEE 95 (506)
Q Consensus 20 ~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (506)
...+.+.|.++|+.+.++|.... ..+...+... ++. ..-....... . +-....++.
T Consensus 82 ~~~~L~~l~~~~~~~~i~Sn~~~-~~~~~~l~~~-----~~~~~f~~i~~~~~~~~---~-----------Kp~~~~~~~ 141 (176)
T PF13419_consen 82 VRELLERLKAKGIPLVIVSNGSR-ERIERVLERL-----GLDDYFDEIISSDDVGS---R-----------KPDPDAYRR 141 (176)
T ss_dssp HHHHHHHHHHTTSEEEEEESSEH-HHHHHHHHHT-----THGGGCSEEEEGGGSSS---S-----------TTSHHHHHH
T ss_pred hhhhhhhcccccceeEEeecCCc-cccccccccc-----ccccccccccccchhhh---h-----------hhHHHHHHH
Confidence 45678888889999999988643 3232222111 222 1111111110 0 111223444
Q ss_pred HHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEE
Q 010617 96 LIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVF 134 (506)
Q Consensus 96 ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~ 134 (506)
+++++.- .+-+++++|... .....|+..|++.|.+
T Consensus 142 ~~~~~~~---~p~~~~~vgD~~-~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 142 ALEKLGI---PPEEILFVGDSP-SDVEAAKEAGIKTIWV 176 (176)
T ss_dssp HHHHHTS---SGGGEEEEESSH-HHHHHHHHTTSEEEEE
T ss_pred HHHHcCC---CcceEEEEeCCH-HHHHHHHHcCCeEEeC
Confidence 5555432 445788888665 9999999999998864
No 276
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=49.40 E-value=21 Score=32.37 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=25.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 43 (506)
|||.++. +.|++- -.|+++..+|||+||-++-...+
T Consensus 1 mKIaiIg--AsG~~G--s~i~~EA~~RGHeVTAivRn~~K 36 (211)
T COG2910 1 MKIAIIG--ASGKAG--SRILKEALKRGHEVTAIVRNASK 36 (211)
T ss_pred CeEEEEe--cCchhH--HHHHHHHHhCCCeeEEEEeChHh
Confidence 4666554 334432 36789999999999999875544
No 277
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=49.31 E-value=82 Score=32.89 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=22.9
Q ss_pred CCccEEEecCCcchHHHHHHHcCCceEEEc
Q 010617 106 EKIDCFIADGNIGWSMEIAKKMNVRGAVFW 135 (506)
Q Consensus 106 ~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~ 135 (506)
.+||++|... ....+|+++|||++.+.
T Consensus 376 ~~pDliiG~s---~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 376 EPVDLLIGNT---YGKYIARDTDIPLVRFG 402 (435)
T ss_pred cCCCEEEECc---cHHHHHHHhCCCEEEee
Confidence 7899999885 46789999999998764
No 278
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=49.05 E-value=30 Score=31.86 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=30.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHH
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 48 (506)
||||+.==-+. +---+..|+++|.+.||+|+++.+...+.....
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~ 44 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGH 44 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTT
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcce
Confidence 56666653333 445678899999778899999999887765533
No 279
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=48.47 E-value=2.2e+02 Score=26.16 Aligned_cols=146 Identities=12% Similarity=0.105 Sum_probs=76.8
Q ss_pred CCceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhc-CCeEEEeccchhhhhcCCCc
Q 010617 308 PSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVA-ARGQMISWAPQLRVLNHPSI 386 (506)
Q Consensus 308 ~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~-~n~~v~~~vpq~~lL~h~~v 386 (506)
++.+++|+.|.+. ...++.|...+.++.++- .. +.+.+.+..+ .++.......+..-+..+++
T Consensus 10 ~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs-~~--------~~~~l~~l~~~~~i~~~~~~~~~~~l~~adl 73 (202)
T PRK06718 10 NKRVVIVGGGKVA-------GRRAITLLKYGAHIVVIS-PE--------LTENLVKLVEEGKIRWKQKEFEPSDIVDAFL 73 (202)
T ss_pred CCEEEEECCCHHH-------HHHHHHHHHCCCeEEEEc-CC--------CCHHHHHHHhCCCEEEEecCCChhhcCCceE
Confidence 3668888877543 345556666677665443 22 1122222222 23444444344455655555
Q ss_pred ceEEeccCchhHHHHHH----cCCcEEec--cCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCC--h
Q 010617 387 ACFLSHCGWNSTMEGVS----NGIPFLCW--PYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGN--Q 458 (506)
Q Consensus 387 ~~~ItHgG~~sv~eal~----~GvP~v~~--P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d--~ 458 (506)
+|.--+...+.+.++ .++++-++ |-..| +..-..+.+. ++-+.+..++..-.-+..|++.|.+++.. .
T Consensus 74 --ViaaT~d~elN~~i~~~a~~~~lvn~~d~~~~~~-f~~Pa~~~~g-~l~iaIsT~G~sP~la~~lr~~ie~~~~~~~~ 149 (202)
T PRK06718 74 --VIAATNDPRVNEQVKEDLPENALFNVITDAESGN-VVFPSALHRG-KLTISVSTDGASPKLAKKIRDELEALYDESYE 149 (202)
T ss_pred --EEEcCCCHHHHHHHHHHHHhCCcEEECCCCccCe-EEEeeEEEcC-CeEEEEECCCCChHHHHHHHHHHHHHcchhHH
Confidence 888878776666655 45655432 11121 2222333332 44444444332233446788888888733 2
Q ss_pred HHHHHHHHHHHHHHh
Q 010617 459 DFKARALELKEKAMS 473 (506)
Q Consensus 459 ~~r~~a~~l~~~~~~ 473 (506)
.+-+.+.++++.+++
T Consensus 150 ~~~~~~~~~R~~~k~ 164 (202)
T PRK06718 150 SYIDFLYECRQKIKE 164 (202)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566667777777765
No 280
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=48.28 E-value=2.5e+02 Score=26.74 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=33.9
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 010617 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (506)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 43 (506)
|.+.+++...-++.|-......||..|+++|++|.++-.+...
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n 43 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVN 43 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 5555555556677799999999999999999999999666444
No 281
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=48.11 E-value=45 Score=33.00 Aligned_cols=42 Identities=29% Similarity=0.376 Sum_probs=31.8
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHH
Q 010617 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (506)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 48 (506)
|+++||+++-.|+.| ..+|..|++.||+|+++.... .+.+..
T Consensus 3 ~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~-~~~~~~ 44 (313)
T PRK06249 3 SETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD-YEAVRE 44 (313)
T ss_pred CcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC-HHHHHh
Confidence 457899999777766 456788999999999998765 444444
No 282
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=48.08 E-value=35 Score=32.17 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=26.9
Q ss_pred CEEEEEcCCCccCHH------------HHHHHHHHHHhCCCeEEEEeCC
Q 010617 4 PRVLVMPAPAQGHVI------------PLLEFSQCLAKHGFRVTFVNTD 40 (506)
Q Consensus 4 ~~il~~~~~~~GH~~------------p~l~La~~L~~rGh~Vt~~~~~ 40 (506)
||||+.+.|+.-.+. --.+||++|+++||+|+++...
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEECc
Confidence 466766666554442 3468899999999999998753
No 283
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=47.89 E-value=61 Score=30.41 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=35.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHH
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 48 (506)
-+++.-.++.|...-...++...+++|..|.|++.+...+.+.+
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~ 70 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLK 70 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHH
Confidence 35566778889999999998888889999999999876655444
No 284
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=47.67 E-value=1.5e+02 Score=24.23 Aligned_cols=85 Identities=16% Similarity=0.219 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHHHHHHhCcHHHHH
Q 010617 16 HVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEE 95 (506)
Q Consensus 16 H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (506)
+=.-++.+|+.|.+.|+++. .++...+.+++. |+....+...... ..+.+.+
T Consensus 10 ~K~~~~~~a~~l~~~G~~i~--AT~gTa~~L~~~---------Gi~~~~v~~~~~~-----------------g~~~i~~ 61 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPLF--ATGGTSRVLADA---------GIPVRAVSKRHED-----------------GEPTVDA 61 (112)
T ss_pred cHHHHHHHHHHHHHCCCEEE--ECcHHHHHHHHc---------CCceEEEEecCCC-----------------CCcHHHH
Confidence 34567899999999999883 566677777775 5655444321110 1122223
Q ss_pred HHHHHhcCCCCCccEEEe--cCCc--------chHHHHHHHcCCceEE
Q 010617 96 LIEEINSREDEKIDCFIA--DGNI--------GWSMEIAKKMNVRGAV 133 (506)
Q Consensus 96 ll~~l~~~~~~~~DlvV~--D~~~--------~~~~~~A~~lgIP~v~ 133 (506)
++.+ . .++|+||. |... +.-..+|-..|||+++
T Consensus 62 ~i~~---~--g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 62 AIAE---K--GKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred HHhC---C--CCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 3321 0 37898886 3222 2345668888999998
No 285
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=47.57 E-value=1.9e+02 Score=25.26 Aligned_cols=139 Identities=14% Similarity=0.120 Sum_probs=72.7
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEeccchhhhhcCCCcceEE
Q 010617 311 VVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFL 390 (506)
Q Consensus 311 vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~vpq~~lL~h~~v~~~I 390 (506)
-|-|-+||. .+....+++...|+..+..+-+.+..- ...|+.+. .++.. +.+..++.||
T Consensus 2 ~V~Ii~gs~--SD~~~~~~a~~~L~~~gi~~~~~V~sa------HR~p~~l~----------~~~~~---~~~~~~~viI 60 (150)
T PF00731_consen 2 KVAIIMGST--SDLPIAEEAAKTLEEFGIPYEVRVASA------HRTPERLL----------EFVKE---YEARGADVII 60 (150)
T ss_dssp EEEEEESSG--GGHHHHHHHHHHHHHTT-EEEEEE--T------TTSHHHHH----------HHHHH---TTTTTESEEE
T ss_pred eEEEEeCCH--HHHHHHHHHHHHHHHcCCCEEEEEEec------cCCHHHHH----------HHHHH---hccCCCEEEE
Confidence 455667763 367888999999999887665554322 34444432 11111 1222334488
Q ss_pred eccCc----hhHHHHHHcCCcEEeccCcccchhhHH----hhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCChHHHH
Q 010617 391 SHCGW----NSTMEGVSNGIPFLCWPYFGDQFLNER----YICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKA 462 (506)
Q Consensus 391 tHgG~----~sv~eal~~GvP~v~~P~~~DQ~~na~----rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~~~r~ 462 (506)
.=.|. .++..++. -.|++.+|...++..... .++-=-|+++..-.- ++-.++..++-.|-.+ .|+++++
T Consensus 61 a~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i-~~~~nAA~~A~~ILa~-~d~~l~~ 137 (150)
T PF00731_consen 61 AVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI-NNGFNAALLAARILAL-KDPELRE 137 (150)
T ss_dssp EEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS-THHHHHHHHHHHHHHT-T-HHHHH
T ss_pred EECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc-cCchHHHHHHHHHHhc-CCHHHHH
Confidence 87775 34555554 799999998766442221 121101455433210 1223444444444433 4789999
Q ss_pred HHHHHHHHHHh
Q 010617 463 RALELKEKAMS 473 (506)
Q Consensus 463 ~a~~l~~~~~~ 473 (506)
+.+..+++.++
T Consensus 138 kl~~~~~~~~~ 148 (150)
T PF00731_consen 138 KLRAYREKMKE 148 (150)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99888888775
No 286
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=47.43 E-value=48 Score=30.90 Aligned_cols=47 Identities=13% Similarity=0.207 Sum_probs=40.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHh
Q 010617 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (506)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 49 (506)
+.+|++.+.++-.|-....-++..|..+|++|+++...-..+.+.+.
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~ 134 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEA 134 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHH
Confidence 46899999999999999999999999999999999887655555444
No 287
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=47.13 E-value=2.5e+02 Score=26.39 Aligned_cols=129 Identities=14% Similarity=0.144 Sum_probs=67.9
Q ss_pred CEEEEEcCCCc--cCHHHHHHHHHHHHhCCCeEEEEeCC----c------chhHHHHhhhcCCCCCCCeEEEecCCCCCC
Q 010617 4 PRVLVMPAPAQ--GHVIPLLEFSQCLAKHGFRVTFVNTD----Y------NHKRVVESLQGKNYLGEQIHLVSIPDGMEP 71 (506)
Q Consensus 4 ~~il~~~~~~~--GH~~p~l~La~~L~~rGh~Vt~~~~~----~------~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~ 71 (506)
++.+|++.-.+ |-..-...|+++|.++|++|...=+- . ....+++.. ........+..+.+.....+
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KPVqsG~~~~~~~~D~~~l~~~~-~~~~~~~~~~py~f~~P~sP 80 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKPVQTGSEETAENSDALVLQRLS-GLDLSYELINPYRFKEPLSP 80 (223)
T ss_pred CceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEECceeeCCCCCCCCchHHHHHHhc-CCCcccccccceecCCCCCc
Confidence 34566664433 99999999999999999999987442 1 111222211 00001122333333333333
Q ss_pred CCCccCHHHHHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcc---------hHHHHHHHcCCceEEEccchHHHH
Q 010617 72 WEDRNDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG---------WSMEIAKKMNVRGAVFWPSSAASV 142 (506)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~---------~~~~~A~~lgIP~v~~~~~~~~~~ 142 (506)
. . -.-.+...=..+.+...+.... .+.|.||++..-. ...+++..+++|++.+.......+
T Consensus 81 h------l---Aa~~eg~~I~~~~l~~~l~~l~-~~~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~lpvILV~~~~LGtI 150 (223)
T COG0132 81 H------L---AAELEGRTIDLEKLSQGLRQLL-KKYDLVLVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVGIKLGTI 150 (223)
T ss_pred H------H---HHhhcCCcccHHHHHHHHHhhh-cccCEEEEeCCCceeeecCCcccHHHHHHHcCCCEEEEecCCccHH
Confidence 2 0 0000000001222222222111 3789999876433 356899999999999887766554
Q ss_pred H
Q 010617 143 A 143 (506)
Q Consensus 143 ~ 143 (506)
.
T Consensus 151 N 151 (223)
T COG0132 151 N 151 (223)
T ss_pred H
Confidence 4
No 288
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=47.07 E-value=2.4e+02 Score=26.27 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=30.1
Q ss_pred EEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 010617 6 VLVMP-APAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (506)
Q Consensus 6 il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 42 (506)
|.|.. -|+-|-..-...||..|+++|++|.++=.+..
T Consensus 4 I~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q 41 (246)
T TIGR03371 4 IAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQ 41 (246)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 34444 56779999999999999999999999966653
No 289
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=46.85 E-value=1.8e+02 Score=30.31 Aligned_cols=27 Identities=19% Similarity=0.076 Sum_probs=22.6
Q ss_pred CCccEEEecCCcchHHHHHHHcCCceEEEc
Q 010617 106 EKIDCFIADGNIGWSMEIAKKMNVRGAVFW 135 (506)
Q Consensus 106 ~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~ 135 (506)
.+||++|... -+..+|+++|||.+.+.
T Consensus 354 ~~pDllig~s---~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 354 FEPDLAIGTT---PLVQFAKEHGIPALYFT 380 (422)
T ss_pred CCCCEEEcCC---cchHHHHHcCCCEEEec
Confidence 7999999883 35668999999999964
No 290
>PLN02929 NADH kinase
Probab=46.71 E-value=1.1e+02 Score=30.33 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=43.5
Q ss_pred cceEEeccCchhHHHHHH---cCCcEEeccCcc------cchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhC
Q 010617 386 IACFLSHCGWNSTMEGVS---NGIPFLCWPYFG------DQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLG 456 (506)
Q Consensus 386 v~~~ItHgG~~sv~eal~---~GvP~v~~P~~~------DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~ 456 (506)
++++|+-||-||+..|.. .++|++.+=..- ++++|.-.... -+|..-. .+.+++.++|++++.
T Consensus 65 ~Dlvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r--~lGfL~~------~~~~~~~~~L~~il~ 136 (301)
T PLN02929 65 VDLVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDARR--STGHLCA------ATAEDFEQVLDDVLF 136 (301)
T ss_pred CCEEEEECCcHHHHHHHHHcCCCCcEEEEECCCccccccccccccccccc--Ccccccc------CCHHHHHHHHHHHHc
Confidence 345999999999999855 468988765431 23334322111 3565543 468999999999996
Q ss_pred Ch
Q 010617 457 NQ 458 (506)
Q Consensus 457 d~ 458 (506)
+.
T Consensus 137 g~ 138 (301)
T PLN02929 137 GR 138 (301)
T ss_pred CC
Confidence 53
No 291
>PRK06988 putative formyltransferase; Provisional
Probab=46.69 E-value=1.3e+02 Score=29.89 Aligned_cols=32 Identities=28% Similarity=0.326 Sum_probs=23.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 40 (506)
+||+|+-.+. ..+...++|.++||+|..+.+.
T Consensus 3 mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~ 34 (312)
T PRK06988 3 PRAVVFAYHN-----VGVRCLQVLLARGVDVALVVTH 34 (312)
T ss_pred cEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEcC
Confidence 7888885443 3456677888899998877664
No 292
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=46.33 E-value=48 Score=34.51 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=22.7
Q ss_pred CCccEEEecCCcchHHHHHHHcCCceEEEc
Q 010617 106 EKIDCFIADGNIGWSMEIAKKMNVRGAVFW 135 (506)
Q Consensus 106 ~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~ 135 (506)
.+||++|.+. ....+|+++|+|++.+.
T Consensus 370 ~~pdliig~~---~~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 370 EPVDLLIGNS---HGRYLARDLGIPLVRVG 396 (428)
T ss_pred cCCCEEEECc---hhHHHHHhcCCCEEEec
Confidence 7899999995 35788999999998754
No 293
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.97 E-value=1e+02 Score=30.33 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=37.6
Q ss_pred cceEEeccCchhHHHHHHc----CCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCCh
Q 010617 386 IACFLSHCGWNSTMEGVSN----GIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 458 (506)
Q Consensus 386 v~~~ItHgG~~sv~eal~~----GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~ 458 (506)
++.+|+=||-||+.+++.. ++|++.+... .+|.. ..++.+++.++|.+++.+.
T Consensus 63 ~d~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G--------------~lGFl------~~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 63 CDLVIVVGGDGSLLGAARALARHNVPVLGINRG--------------RLGFL------TDIRPDELEFKLAEVLDGH 119 (295)
T ss_pred CCEEEEEeCcHHHHHHHHHhcCCCCCEEEEeCC--------------ccccc------ccCCHHHHHHHHHHHHcCC
Confidence 3449999999999999753 6787766531 12322 2357899999999998643
No 294
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.93 E-value=53 Score=33.44 Aligned_cols=46 Identities=15% Similarity=0.301 Sum_probs=39.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhh
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESL 50 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~ 50 (506)
-|+|+-.-+.|...-+-.+|..+.++|+.|-+++.+-++....+++
T Consensus 103 VimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQL 148 (483)
T KOG0780|consen 103 VIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQL 148 (483)
T ss_pred EEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHH
Confidence 4557777788999999999999999999999999998876655554
No 295
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=45.68 E-value=2.3e+02 Score=27.04 Aligned_cols=31 Identities=13% Similarity=0.120 Sum_probs=23.5
Q ss_pred CccEEE-ecCCcc-hHHHHHHHcCCceEEEccc
Q 010617 107 KIDCFI-ADGNIG-WSMEIAKKMNVRGAVFWPS 137 (506)
Q Consensus 107 ~~DlvV-~D~~~~-~~~~~A~~lgIP~v~~~~~ 137 (506)
-||++| .|...- -|..=|.++|||+|.+.-+
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDT 188 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDT 188 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecC
Confidence 488877 555433 6888899999999997654
No 296
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=45.36 E-value=1.7e+02 Score=25.24 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=21.9
Q ss_pred cceEEeccC------chhHHHHHHcCCcEEeccC
Q 010617 386 IACFLSHCG------WNSTMEGVSNGIPFLCWPY 413 (506)
Q Consensus 386 v~~~ItHgG------~~sv~eal~~GvP~v~~P~ 413 (506)
..+++.|+| .+.+.+|...++|+|++.-
T Consensus 60 ~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 60 PGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 334888866 3578899999999999863
No 297
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=45.36 E-value=2.2e+02 Score=25.31 Aligned_cols=100 Identities=12% Similarity=0.149 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCcc-hhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHHHHHHhCcHHHHHHH
Q 010617 19 PLLEFSQCLAKHGFRVTFVNTDYN-HKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELI 97 (506)
Q Consensus 19 p~l~La~~L~~rGh~Vt~~~~~~~-~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 97 (506)
-+..|.+...++|..|.++..... .+.+...+. ...+++.+....++.- .....++++
T Consensus 36 l~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~---~~yP~l~ivg~~~g~f------------------~~~~~~~i~ 94 (172)
T PF03808_consen 36 LFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLR---RRYPGLRIVGYHHGYF------------------DEEEEEAII 94 (172)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH---HHCCCeEEEEecCCCC------------------ChhhHHHHH
Confidence 345566666678899999977542 232222221 1236777776544332 112245556
Q ss_pred HHHhcCCCCCccEEEecCCcc----hHHHHHHHcCCceEEEccchHHHHH
Q 010617 98 EEINSREDEKIDCFIADGNIG----WSMEIAKKMNVRGAVFWPSSAASVA 143 (506)
Q Consensus 98 ~~l~~~~~~~~DlvV~D~~~~----~~~~~A~~lgIP~v~~~~~~~~~~~ 143 (506)
+.+++ .+||+|++-.-.+ |.....+.++.+ +.+..+.+..+.
T Consensus 95 ~~I~~---~~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~~~d~~ 140 (172)
T PF03808_consen 95 NRINA---SGPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGGAFDFL 140 (172)
T ss_pred HHHHH---cCCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECchhhhh
Confidence 66666 8999999998777 566677777777 566666555443
No 298
>PRK14974 cell division protein FtsY; Provisional
Probab=44.89 E-value=87 Score=31.48 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=33.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHK 44 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 44 (506)
.|+|+-.++.|-..-+..||..|.++|+.|.++..+.++.
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~ 181 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA 181 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH
Confidence 4557778888999999999999999999999988875543
No 299
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=44.58 E-value=1e+02 Score=27.29 Aligned_cols=99 Identities=9% Similarity=0.019 Sum_probs=56.8
Q ss_pred chhhhhhhcCCCCceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEec-c
Q 010617 297 SNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISW-A 375 (506)
Q Consensus 297 ~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~-v 375 (506)
.++-++|.+++ ...++ |. ....+....++....+-+++-+++.... +.+- ..+.....++ -
T Consensus 21 ~~lg~~La~~g---~~lv~-Gg----~~GlM~a~a~ga~~~gg~viGVlp~~l~-------~~~~---~~~~~i~~~~~~ 82 (159)
T TIGR00725 21 YRLGKELAKKG---HILIN-GG----RTGVMEAVSKGAREAGGLVVGILPDEDF-------AGNP---YLTIKVKTGMNF 82 (159)
T ss_pred HHHHHHHHHCC---CEEEc-CC----chhHHHHHHHHHHHCCCeEEEECChhhc-------cCCC---CceEEEECCCcc
Confidence 34556676553 56665 42 2356777777776777777655543310 1110 0111112343 4
Q ss_pred chhhhhcCCCcceEEeccCchhHHH---HHHcCCcEEeccC
Q 010617 376 PQLRVLNHPSIACFLSHCGWNSTME---GVSNGIPFLCWPY 413 (506)
Q Consensus 376 pq~~lL~h~~v~~~ItHgG~~sv~e---al~~GvP~v~~P~ 413 (506)
+.+.++...+-..++--||.||+-| ++.+++|+++++.
T Consensus 83 ~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 83 ARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred hHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 4666665444455666788887655 5889999999885
No 300
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=44.54 E-value=4.2e+02 Score=28.21 Aligned_cols=104 Identities=14% Similarity=0.078 Sum_probs=65.8
Q ss_pred EEeccchhhh---hcCCCcceEEe---ccCchhH-HHHHHcCC----cEEeccCcccchhhHHhhhccceeeeEeecCCC
Q 010617 371 MISWAPQLRV---LNHPSIACFLS---HCGWNST-MEGVSNGI----PFLCWPYFGDQFLNERYICDFWKVGLKFDRDEG 439 (506)
Q Consensus 371 v~~~vpq~~l---L~h~~v~~~It---HgG~~sv-~eal~~Gv----P~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~ 439 (506)
+.+.+|+.++ ++.++| ++- .-|+|-+ .|.++++. |+|+=-+. -|+ ++ +.-++.+++
T Consensus 366 ~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefa-----Gaa--~~-l~~AllVNP--- 432 (487)
T TIGR02398 366 FTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFA-----GAA--VE-LKGALLTNP--- 432 (487)
T ss_pred EcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEeccc-----cch--hh-cCCCEEECC---
Confidence 4477887764 456666 443 3488855 49999877 54433332 222 23 455777765
Q ss_pred CCcCHHHHHHHHHHHhCCh--HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHh
Q 010617 440 GIITREEIKNKVDQVLGNQ--DFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKT 494 (506)
Q Consensus 440 ~~~~~~~l~~ai~~vl~d~--~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~ 494 (506)
.+.++++++|.++|..+ +=+++.+++.+.+++ -....=.+.|++.+..
T Consensus 433 --~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 433 --YDPVRMDETIYVALAMPKAEQQARMREMFDAVNY-----YDVQRWADEFLAAVSP 482 (487)
T ss_pred --CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhh
Confidence 68999999999999876 456666777776665 2334445555555543
No 301
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=44.47 E-value=2e+02 Score=30.18 Aligned_cols=106 Identities=13% Similarity=0.172 Sum_probs=59.6
Q ss_pred EEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHHH
Q 010617 6 VLVMPAP-AQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEK 84 (506)
Q Consensus 6 il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 84 (506)
|++.... .-|-..-...|++.|.++|++|..+-+.... +.. .+ +..-.+.+..+ -+. ++
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d~--~D~----------~~--~~~~~g~~~~~--ld~--~~-- 61 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGPDY--IDP----------MF--HTQATGRPSRN--LDS--FF-- 61 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCCCC--CCH----------HH--HHHHhCCchhh--CCc--cc--
Confidence 4454333 3488999999999999999999998542110 000 00 00000000000 000 00
Q ss_pred HHHhCcHHHHHHHHHHhcCCCCCccEEEecCC-------c-----chHHHHHHHcCCceEEEccch
Q 010617 85 CLQVMPGKLEELIEEINSREDEKIDCFIADGN-------I-----GWSMEIAKKMNVRGAVFWPSS 138 (506)
Q Consensus 85 ~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~-------~-----~~~~~~A~~lgIP~v~~~~~~ 138 (506)
.....+.+.++++. .+.|++|++.. . ....++|+.++.|++.+....
T Consensus 62 ---~~~~~i~~~~~~~~----~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~ 120 (449)
T TIGR00379 62 ---MSEAQIQECFHRHS----KGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ 120 (449)
T ss_pred ---CCHHHHHHHHHHhc----ccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc
Confidence 11223444444432 46799997754 1 237799999999999988655
No 302
>PRK08862 short chain dehydrogenase; Provisional
Probab=44.46 E-value=1.1e+02 Score=28.52 Aligned_cols=36 Identities=11% Similarity=0.257 Sum_probs=25.0
Q ss_pred CC-CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 010617 1 MS-RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (506)
Q Consensus 1 m~-~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 39 (506)
|+ +.+..+++.++ +.+ -.++|++|+++|++|.++..
T Consensus 1 ~~~~~k~~lVtGas-~GI--G~aia~~la~~G~~V~~~~r 37 (227)
T PRK08862 1 MDIKSSIILITSAG-SVL--GRTISCHFARLGATLILCDQ 37 (227)
T ss_pred CCCCCeEEEEECCc-cHH--HHHHHHHHHHCCCEEEEEcC
Confidence 44 44566666443 333 57899999999999988754
No 303
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=43.96 E-value=1.5e+02 Score=29.47 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=23.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 40 (506)
|||+|+-.+.. .+...++|.++||+|..+.+.
T Consensus 1 mkIvf~Gs~~~-----a~~~L~~L~~~~~~i~~Vvt~ 32 (313)
T TIGR00460 1 LRIVFFGTPTF-----SLPVLEELREDNFEVVGVVTQ 32 (313)
T ss_pred CEEEEECCCHH-----HHHHHHHHHhCCCcEEEEEcC
Confidence 57888754443 366778889999998877654
No 304
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=43.85 E-value=2.3e+02 Score=30.51 Aligned_cols=42 Identities=10% Similarity=0.366 Sum_probs=34.7
Q ss_pred cHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccc
Q 010617 90 PGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPS 137 (506)
Q Consensus 90 ~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~ 137 (506)
....+..+..++. ..+++||.|. -+..+|+++|++.+.+.+.
T Consensus 131 ~~e~~~~~~~l~~---~G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 131 EEDARSCVNDLRA---RGIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHHHHHHH---CCCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 4567777888877 7899999996 4678999999999998764
No 305
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=43.80 E-value=68 Score=30.30 Aligned_cols=39 Identities=21% Similarity=0.375 Sum_probs=32.0
Q ss_pred EEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 010617 6 VLVMPA-PAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHK 44 (506)
Q Consensus 6 il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 44 (506)
|.|++. |+-|-..-++.||.+|+++|-.|+++=.++++.
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~p 43 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQP 43 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 345554 455999999999999999999999997776664
No 306
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=43.13 E-value=1e+02 Score=28.96 Aligned_cols=99 Identities=15% Similarity=0.273 Sum_probs=52.0
Q ss_pred CCEEEEEcCCCc-cCH---HHHHHHHHHHHhCCCeEEEEeCCcc--hhHHHHhhhcCCCCCCCeE--EEecCCCCCCCCC
Q 010617 3 RPRVLVMPAPAQ-GHV---IPLLEFSQCLAKHGFRVTFVNTDYN--HKRVVESLQGKNYLGEQIH--LVSIPDGMEPWED 74 (506)
Q Consensus 3 ~~~il~~~~~~~-GH~---~p~l~La~~L~~rGh~Vt~~~~~~~--~~~v~~~~~~~~~~~~~i~--~~~~~~~~~~~~~ 74 (506)
+..|+|.+..+. .-- .-...|++.|.++|.+|.++.++.. .+...... .++. ...+...
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~-------~~~~~~~~~~~~~------ 171 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIA-------AGLQNPVINLAGK------ 171 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHH-------TTHTTTTEEETTT------
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHH-------HhcccceEeecCC------
Confidence 345667765544 222 2358999999999988888888766 22222221 1111 1111110
Q ss_pred ccCHHHHHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccc
Q 010617 75 RNDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPS 137 (506)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~ 137 (506)
.+ +.+++.-+. .-|++|+-- ...+.+|..+|+|++.++..
T Consensus 172 -~~---------------l~e~~ali~-----~a~~~I~~D--tg~~HlA~a~~~p~v~lfg~ 211 (247)
T PF01075_consen 172 -TS---------------LRELAALIS-----RADLVIGND--TGPMHLAAALGTPTVALFGP 211 (247)
T ss_dssp -S----------------HHHHHHHHH-----TSSEEEEES--SHHHHHHHHTT--EEEEESS
T ss_pred -CC---------------HHHHHHHHh-----cCCEEEecC--ChHHHHHHHHhCCEEEEecC
Confidence 11 333344332 458999753 57888999999999997644
No 307
>PRK00784 cobyric acid synthase; Provisional
Probab=42.67 E-value=3e+02 Score=29.23 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=27.0
Q ss_pred EEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeC
Q 010617 6 VLVMPAP-AQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (506)
Q Consensus 6 il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~ 39 (506)
|++.... .-|-..-...|++.|.++|++|..+=+
T Consensus 5 ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 5 LMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 4444333 459999999999999999999998755
No 308
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.54 E-value=56 Score=31.62 Aligned_cols=52 Identities=12% Similarity=0.034 Sum_probs=36.4
Q ss_pred cceEEeccCchhHHHHHH------cCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCC
Q 010617 386 IACFLSHCGWNSTMEGVS------NGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGN 457 (506)
Q Consensus 386 v~~~ItHgG~~sv~eal~------~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d 457 (506)
++++|+-||-||+..|+. .++|++.+-.. .+|..- .+..+++.+++.+++.+
T Consensus 36 ~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G--------------~lGFL~------~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 36 PDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHTG--------------HLGFYT------DWRPFEVDKLVIALAKD 93 (265)
T ss_pred CCEEEEECCcHHHHHHHHHhcccCCCCeEEEEeCC--------------Cceecc------cCCHHHHHHHHHHHHcC
Confidence 344999999999999976 47888766521 133332 24677888888888864
No 309
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=42.54 E-value=1.5e+02 Score=27.45 Aligned_cols=46 Identities=24% Similarity=0.361 Sum_probs=35.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCcchhHHHHhh
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKH-GFRVTFVNTDYNHKRVVESL 50 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~v~~~~ 50 (506)
-+|+.-.|+.|-..-...++.+-+++ |..|.+++.....+.+.+..
T Consensus 21 ~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~ 67 (226)
T PF06745_consen 21 VVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENM 67 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHH
Confidence 46677778889999999998888888 99999999988776666554
No 310
>KOG1509 consensus Predicted nucleic acid-binding protein ASMTL [Cell cycle control, cell division, chromosome partitioning]
Probab=42.38 E-value=64 Score=29.42 Aligned_cols=78 Identities=18% Similarity=0.258 Sum_probs=49.9
Q ss_pred hCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHHHHHHhCcHHHHHHHHHHhcCCCCCc
Q 010617 29 KHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELIEEINSREDEKI 108 (506)
Q Consensus 29 ~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 108 (506)
..|+++++.+.+.-++.+.+.. |+++...+..+.......+.....+............++++|.+..+..|
T Consensus 7 ~~~~riiL~S~s~rrk~i~~~~--------G~~~~~~~S~feEnl~k~~~~~p~~yv~~tA~~KA~~I~erL~~~Ed~~~ 78 (209)
T KOG1509|consen 7 LKGKRIILASASPRRKQILAEM--------GLNLEVVVSTFEENLIKSSFETPEDYVVETAKQKAEEIIERLGDGEDSFP 78 (209)
T ss_pred hcCcEEEEecCCchHHHHHHHc--------CCceEEEeccchhhchhhccCCHHHHHHHHHHHHHHHHHHHhhccccCCc
Confidence 4689999999887777776653 67777766555544222223333444555566778888999887554446
Q ss_pred cEEEec
Q 010617 109 DCFIAD 114 (506)
Q Consensus 109 DlvV~D 114 (506)
|++++-
T Consensus 79 ~~vi~a 84 (209)
T KOG1509|consen 79 DVVISA 84 (209)
T ss_pred cccccc
Confidence 666643
No 311
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=41.60 E-value=1.3e+02 Score=27.55 Aligned_cols=39 Identities=15% Similarity=0.206 Sum_probs=31.1
Q ss_pred CCEEEEEcCCC-ccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010617 3 RPRVLVMPAPA-QGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (506)
Q Consensus 3 ~~~il~~~~~~-~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 41 (506)
+.++-|+..|. .|-.--++.-++....+|-.|.++.+.-
T Consensus 3 ~g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~i 42 (201)
T COG1435 3 MGWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAI 42 (201)
T ss_pred eEEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEeccc
Confidence 34555655554 4999999999999999999999998853
No 312
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=41.60 E-value=55 Score=31.99 Aligned_cols=75 Identities=12% Similarity=0.184 Sum_probs=55.3
Q ss_pred cCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEeccchhhhhcCCCcceEEeccCchhHHH
Q 010617 321 ILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLSHCGWNSTME 400 (506)
Q Consensus 321 ~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~vpq~~lL~h~~v~~~ItHgG~~sv~e 400 (506)
..+.+..+.+.+|+.+...+.||...+..+ ..++.++++...+-+||.+ ||-+....+++-
T Consensus 45 ~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~g-----------------a~rlL~~ld~~~~~~~pK~--~iGySDiTaL~~ 105 (282)
T cd07025 45 GTDEERAADLNAAFADPEIKAIWCARGGYG-----------------ANRLLPYLDYDLIRANPKI--FVGYSDITALHL 105 (282)
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEcCCcCC-----------------HHHhhhhCCHHHHhhCCeE--EEEecHHHHHHH
Confidence 345677888999999999999999976521 1235667777777777777 888888888888
Q ss_pred HHHc--CCcEEeccCc
Q 010617 401 GVSN--GIPFLCWPYF 414 (506)
Q Consensus 401 al~~--GvP~v~~P~~ 414 (506)
+++. |++.+-=|..
T Consensus 106 ~l~~~~g~~t~hGp~~ 121 (282)
T cd07025 106 ALYAKTGLVTFHGPML 121 (282)
T ss_pred HHHHhcCceEEECccc
Confidence 8764 7777666643
No 313
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=41.34 E-value=4.2e+02 Score=28.08 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=24.0
Q ss_pred ccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010617 14 QGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (506)
Q Consensus 14 ~GH~~p~l~La~~L~~rGh~Vt~~~~~ 40 (506)
-|-..-...|++.|.++|++|..+=+.
T Consensus 10 vGKT~v~~~L~~~l~~~G~~v~~fKp~ 36 (475)
T TIGR00313 10 AGKSTLTAGLCRILARRGYRVAPFKSQ 36 (475)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 488889999999999999999988664
No 314
>PRK14098 glycogen synthase; Provisional
Probab=40.53 E-value=39 Score=35.94 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=29.0
Q ss_pred CEEEEEcCC------CccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010617 4 PRVLVMPAP------AQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (506)
Q Consensus 4 ~~il~~~~~------~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 41 (506)
+||||++.- +.|=-.-.-+|.++|+++||+|.++.+.+
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 789988732 22333556788999999999999999954
No 315
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=40.50 E-value=39 Score=30.69 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=32.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHH
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 48 (506)
||++.-.++.| ..-...+.+.|.++|++|.++.++...+.+..
T Consensus 3 ~Ill~vtGsia-a~~~~~li~~L~~~g~~V~vv~T~~A~~fi~~ 45 (182)
T PRK07313 3 NILLAVSGSIA-AYKAADLTSQLTKRGYQVTVLMTKAATKFITP 45 (182)
T ss_pred EEEEEEeChHH-HHHHHHHHHHHHHCCCEEEEEEChhHHHHcCH
Confidence 56655545444 44589999999999999999999877666543
No 316
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=40.41 E-value=38 Score=32.24 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCc
Q 010617 17 VIPLLEFSQCLAKHGFRVTFVNTDY 41 (506)
Q Consensus 17 ~~p~l~La~~L~~rGh~Vt~~~~~~ 41 (506)
-.-.-.|+++|+++||+|+++++..
T Consensus 19 gdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 19 GDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred hHHHHHHHHHHHhcCCeEEEEEccc
Confidence 3456789999999999999999965
No 317
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=40.25 E-value=1.6e+02 Score=29.26 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=33.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 43 (506)
.|+|+-.++-|-..-+..||..|..+|++|.++..+.+.
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 345677778899999999999999999999999887654
No 318
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=40.09 E-value=57 Score=28.86 Aligned_cols=34 Identities=18% Similarity=0.057 Sum_probs=26.9
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEE
Q 010617 311 VVYVSFGSFTILDQVQFQELALGLELCKRPFLWV 344 (506)
Q Consensus 311 vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 344 (506)
.||+|+||........++..++++.+.+.--++.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~ 36 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVA 36 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 6999999988777788999999998777533333
No 319
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.91 E-value=43 Score=32.51 Aligned_cols=57 Identities=12% Similarity=0.152 Sum_probs=37.9
Q ss_pred hhhhcCCCcceEEeccCchhHHHHHHc----CCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHH
Q 010617 378 LRVLNHPSIACFLSHCGWNSTMEGVSN----GIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQ 453 (506)
Q Consensus 378 ~~lL~h~~v~~~ItHgG~~sv~eal~~----GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~ 453 (506)
.++...+++ +|+=||-||+..|... ++|++.+-.. .+|..-+ ++++++.+++.+
T Consensus 37 ~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~G--------------~lGFL~~------~~~~~~~~~l~~ 94 (272)
T PRK02231 37 EEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINRG--------------NLGFLTD------IDPKNAYEQLEA 94 (272)
T ss_pred HHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------CCccccc------CCHHHHHHHHHH
Confidence 444434444 9999999999988553 6787765321 2343332 467888888888
Q ss_pred HhC
Q 010617 454 VLG 456 (506)
Q Consensus 454 vl~ 456 (506)
++.
T Consensus 95 ~~~ 97 (272)
T PRK02231 95 CLE 97 (272)
T ss_pred HHh
Confidence 886
No 320
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=39.88 E-value=2.9e+02 Score=31.12 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=30.5
Q ss_pred CEEEEEc--CCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 010617 4 PRVLVMP--APAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (506)
Q Consensus 4 ~~il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 42 (506)
.|++.++ .|+-|-..-...||..|++.|++|.++=.+..
T Consensus 546 ~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~ 586 (754)
T TIGR01005 546 PEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGR 586 (754)
T ss_pred ceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 4555333 55669999999999999999999999866543
No 321
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=39.65 E-value=1.3e+02 Score=31.42 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHHHHHHhCcHHHHHHH
Q 010617 18 IPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELI 97 (506)
Q Consensus 18 ~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 97 (506)
.....+++.|.+.|-+|..+............ +.. .-...|.. .+++++
T Consensus 321 ~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~~----------------~~~---~~~~~D~~------------~l~~~i 369 (432)
T TIGR01285 321 DLLAAWATFFTSMGAQIVAAVTTTGSPLLQKL----------------PVE---TVVIGDLE------------DLEDLA 369 (432)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHhC----------------CcC---cEEeCCHH------------HHHHHH
Confidence 46678888888899988777665443322111 000 00001211 134445
Q ss_pred HHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEc
Q 010617 98 EEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFW 135 (506)
Q Consensus 98 ~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~ 135 (506)
++ .++|++|... ....+|+++|||++.+.
T Consensus 370 ~~------~~~dliig~s---~~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 370 CA------AGADLLITNS---HGRALAQRLALPLVRAG 398 (432)
T ss_pred hh------cCCCEEEECc---chHHHHHHcCCCEEEec
Confidence 55 7899999884 45789999999998753
No 322
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=39.38 E-value=2.5e+02 Score=26.31 Aligned_cols=44 Identities=16% Similarity=0.354 Sum_probs=34.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHH
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 48 (506)
.+++.-.++.|-....+.++..++++|..+.+++.+...+.+.+
T Consensus 26 ~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~ 69 (230)
T PRK08533 26 LILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIK 69 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHH
Confidence 45566677889999999999999999999999998766554433
No 323
>PRK13768 GTPase; Provisional
Probab=39.29 E-value=44 Score=32.00 Aligned_cols=37 Identities=24% Similarity=0.391 Sum_probs=30.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 42 (506)
+++.-.++.|-..-...++..|.++|++|.++..+..
T Consensus 5 i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 5 VFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 4556667779999999999999999999999976543
No 324
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=39.27 E-value=58 Score=31.97 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=30.2
Q ss_pred CCCCEEEEEcCCCcc-C---HHHHHHHHHHHHhCCCeEEEEeC
Q 010617 1 MSRPRVLVMPAPAQG-H---VIPLLEFSQCLAKHGFRVTFVNT 39 (506)
Q Consensus 1 m~~~~il~~~~~~~G-H---~~p~l~La~~L~~rGh~Vt~~~~ 39 (506)
|+|.||.++..+..+ | +.-..+++++|.+.||+|.++..
T Consensus 1 ~~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 1 MKNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 888999998854332 1 45777899999999999988743
No 325
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=38.94 E-value=1.7e+02 Score=28.51 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=19.8
Q ss_pred HHHHHHHHhCCCeEEEEeCCcch
Q 010617 21 LEFSQCLAKHGFRVTFVNTDYNH 43 (506)
Q Consensus 21 l~La~~L~~rGh~Vt~~~~~~~~ 43 (506)
.++|..|+++|++|.+++.+..+
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~ 25 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAH 25 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCC
Confidence 46888999999999999997655
No 326
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=38.87 E-value=40 Score=35.55 Aligned_cols=39 Identities=23% Similarity=0.357 Sum_probs=31.7
Q ss_pred CCEEEEEcCCCccCHHH------------HHHHHHHHHhCCCeEEEEeCCc
Q 010617 3 RPRVLVMPAPAQGHVIP------------LLEFSQCLAKHGFRVTFVNTDY 41 (506)
Q Consensus 3 ~~~il~~~~~~~GH~~p------------~l~La~~L~~rGh~Vt~~~~~~ 41 (506)
..|||+...|+.=.+.| -.+||+++..||++||+++.+-
T Consensus 256 gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 256 GRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 35788888887766655 4689999999999999999754
No 327
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=38.86 E-value=48 Score=33.21 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCCCCccEEEecCCcch----------HHHHHHHcCCceEE
Q 010617 92 KLEELIEEINSREDEKIDCFIADGNIGW----------SMEIAKKMNVRGAV 133 (506)
Q Consensus 92 ~~~~ll~~l~~~~~~~~DlvV~D~~~~~----------~~~~A~~lgIP~v~ 133 (506)
..+.+++-+++ .+||++|+-+.+.+ +..+.++++||.++
T Consensus 68 a~~~i~~mv~~---~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vt 116 (349)
T PF07355_consen 68 ALKKILEMVKK---LKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVT 116 (349)
T ss_pred HHHHHHHHHHh---cCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEE
Confidence 34444555544 89999999986653 22466789999998
No 328
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.61 E-value=3e+02 Score=26.14 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHhcCCCCCccEEEecCCcch---HHHHHHHcCCceEE
Q 010617 90 PGKLEELIEEINSREDEKIDCFIADGNIGW---SMEIAKKMNVRGAV 133 (506)
Q Consensus 90 ~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~---~~~~A~~lgIP~v~ 133 (506)
....+.+++.|+ +-++.+.|..+.+ +..+|+..|||++.
T Consensus 137 ~~aM~~~m~~Lk-----~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 137 EDAMEKLMEALK-----ERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HHHHHHHHHHHH-----HCCeEEEcccccccchhhhhHhhcCCceee
Confidence 556677888875 4589999988774 67899999999998
No 329
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=38.50 E-value=41 Score=30.49 Aligned_cols=42 Identities=19% Similarity=0.310 Sum_probs=30.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHH
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 48 (506)
|++.-.|+-|-. =...+.+.|.++|++|.++.++...+.+..
T Consensus 2 illgvtGsiaa~-ka~~lir~L~~~g~~V~vv~T~~A~~fv~~ 43 (181)
T TIGR00421 2 IVVAMTGASGVI-YGIRLLEVLKEAGVEVHLVISDWAKETIKY 43 (181)
T ss_pred EEEEEECHHHHH-HHHHHHHHHHHCCCEEEEEECccHHHHHHH
Confidence 444333444444 448899999999999999999888777653
No 330
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=38.39 E-value=3.2e+02 Score=25.06 Aligned_cols=99 Identities=18% Similarity=0.248 Sum_probs=57.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe---CC--cchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHH
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVN---TD--YNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLG 79 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~---~~--~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (506)
-|.+.+..+.|-....+.+|-+-+-+|.+|.++- .. ..+....+.+ ..++.|+..+.++.-.....+-
T Consensus 30 li~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~------~~~v~~~~~~~g~tw~~~~~~~- 102 (198)
T COG2109 30 LIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKF------GLGVEFHGMGEGFTWETQDREA- 102 (198)
T ss_pred eEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhh------ccceeEEecCCceeCCCcCcHH-
Confidence 3667888888888777766666666777766652 22 2222232221 2468888888766544211111
Q ss_pred HHHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcc
Q 010617 80 KLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG 118 (506)
Q Consensus 80 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~ 118 (506)
+ . ..+...++...+.+.+ .++|+||.|-+.+
T Consensus 103 d---~--~aa~~~w~~a~~~l~~---~~ydlviLDEl~~ 133 (198)
T COG2109 103 D---I--AAAKAGWEHAKEALAD---GKYDLVILDELNY 133 (198)
T ss_pred H---H--HHHHHHHHHHHHHHhC---CCCCEEEEehhhH
Confidence 1 1 3334445555555555 7999999998654
No 331
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=38.34 E-value=52 Score=30.00 Aligned_cols=40 Identities=13% Similarity=0.073 Sum_probs=31.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHK 44 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 44 (506)
||++.-.|+.|=+.-.+.+.++|.++|++|+++.++....
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~~ 41 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQT 41 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHHH
Confidence 5666655666666666799999999999999998876553
No 332
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=38.31 E-value=1.3e+02 Score=29.79 Aligned_cols=35 Identities=17% Similarity=0.369 Sum_probs=30.6
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 010617 9 MPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (506)
Q Consensus 9 ~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 43 (506)
++.++.|-.--...|++.|.++|++|.+++-.+-.
T Consensus 36 itvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 70 (311)
T TIGR00682 36 LSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYGS 70 (311)
T ss_pred cccCCcChHHHHHHHHHHHHHCCCEEEEECCCCCC
Confidence 45788999999999999999999999999986554
No 333
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=38.22 E-value=90 Score=26.75 Aligned_cols=47 Identities=9% Similarity=0.182 Sum_probs=39.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHh
Q 010617 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (506)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 49 (506)
+.+|++-+..+.+|-.-.--++..|..+|++|......-..+.+.+.
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~a 47 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKA 47 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 35788999999999999999999999999999999887655544443
No 334
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=38.17 E-value=3.4e+02 Score=25.89 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=25.9
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 010617 10 PAPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (506)
Q Consensus 10 ~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 39 (506)
+-|+.|-..=..+||..|++.|++|..+=-
T Consensus 9 ~kGGvG~TTltAnLA~aL~~~G~~VlaID~ 38 (243)
T PF06564_consen 9 PKGGVGKTTLTANLAWALARLGESVLAIDL 38 (243)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 356679999999999999999999998833
No 335
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=38.16 E-value=3.1e+02 Score=24.94 Aligned_cols=34 Identities=12% Similarity=0.203 Sum_probs=20.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCC--eEEEEeCC
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGF--RVTFVNTD 40 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh--~Vt~~~~~ 40 (506)
+||.++..+..+-+ .++.+.+.+.++ +|.++.++
T Consensus 1 ~riail~sg~gs~~---~~ll~~~~~~~l~~~I~~vi~~ 36 (190)
T TIGR00639 1 KRIVVLISGNGSNL---QAIIDACKEGKIPASVVLVISN 36 (190)
T ss_pred CeEEEEEcCCChhH---HHHHHHHHcCCCCceEEEEEEC
Confidence 46777765554444 456667776654 67765444
No 336
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.02 E-value=51 Score=32.13 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=35.7
Q ss_pred cceEEeccCchhHHHHHH---cCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCC
Q 010617 386 IACFLSHCGWNSTMEGVS---NGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGN 457 (506)
Q Consensus 386 v~~~ItHgG~~sv~eal~---~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d 457 (506)
++++|.-||-||+.+++. .++|++.++... + |.. ..+..+++.+++.+++.+
T Consensus 58 ~d~vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~------------l--GFl------~~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 58 VDFIIAIGGDGTILRIEHKTKKDIPILGINMGT------------L--GFL------TEVEPEETFFALSRLLEG 112 (277)
T ss_pred CCEEEEEeCcHHHHHHHHhcCCCCeEEEEeCCC------------C--Ccc------ccCCHHHHHHHHHHHHcC
Confidence 445999999999999984 356887777321 1 222 224577888888888854
No 337
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=37.71 E-value=2e+02 Score=30.16 Aligned_cols=26 Identities=27% Similarity=0.156 Sum_probs=21.3
Q ss_pred CCccEEEecCCcchHHHHHHHcCCceEEE
Q 010617 106 EKIDCFIADGNIGWSMEIAKKMNVRGAVF 134 (506)
Q Consensus 106 ~~~DlvV~D~~~~~~~~~A~~lgIP~v~~ 134 (506)
.+||++|.. .....+|+++|||++.+
T Consensus 394 ~~pDl~ig~---~~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 394 YKADLLIAG---GKERYTALKLGIPFCDI 419 (456)
T ss_pred cCCCEEEEc---cchHHHHHhcCCCEEEc
Confidence 789999986 34567888999999875
No 338
>PRK04330 hypothetical protein; Provisional
Probab=37.60 E-value=1.3e+02 Score=23.60 Aligned_cols=57 Identities=14% Similarity=0.193 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhCCh----HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHhccccCCCCCC
Q 010617 445 EEIKNKVDQVLGNQ----DFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTNALAHNSPVT 504 (506)
Q Consensus 445 ~~l~~ai~~vl~d~----~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (506)
++....+.++.+|. .+|+.|.+..+.+++ ++-+..-....-+..|.+-..+.|-|.+
T Consensus 12 k~~~~~L~~I~~D~sVPRNIRraa~ea~~~L~~---e~~~~~vRaA~AIs~LdeIs~DPNmP~h 72 (88)
T PRK04330 12 KQAIQMLEEIINDTSVPRNIRRAATEAKEILLN---EEESPGVRAATAISILDEISNDPNMPLH 72 (88)
T ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhC---cCcchhHHHHHHHHHHHHhhcCCCCChH
Confidence 34455566777777 567777777777765 3434444455555555555555666654
No 339
>PRK05920 aromatic acid decarboxylase; Validated
Probab=37.60 E-value=64 Score=29.85 Aligned_cols=44 Identities=16% Similarity=0.258 Sum_probs=33.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHH
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 48 (506)
.||++.-.+ ....+=...+.+.|.+.||+|.++.++...+.+..
T Consensus 4 krIllgITG-siaa~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~~ 47 (204)
T PRK05920 4 KRIVLAITG-ASGAIYGVRLLECLLAADYEVHLVISKAAQKVLAT 47 (204)
T ss_pred CEEEEEEeC-HHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHHHH
Confidence 456654434 44447889999999999999999999887776654
No 340
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=37.45 E-value=1.1e+02 Score=30.59 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=26.1
Q ss_pred CCccEEEe-cCCcc-hHHHHHHHcCCceEEEccchHH
Q 010617 106 EKIDCFIA-DGNIG-WSMEIAKKMNVRGAVFWPSSAA 140 (506)
Q Consensus 106 ~~~DlvV~-D~~~~-~~~~~A~~lgIP~v~~~~~~~~ 140 (506)
..||+||+ |...- .+..=|.++|||+|.+.-+.+.
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~d 187 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNCD 187 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCCC
Confidence 47888874 55433 7888999999999998765443
No 341
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=37.23 E-value=2.3e+02 Score=28.07 Aligned_cols=84 Identities=15% Similarity=0.205 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHHHHHHhCcHHHHHHHH
Q 010617 19 PLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELIE 98 (506)
Q Consensus 19 p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 98 (506)
-+..|++.|.++|+.|.++.++...+..+...... +-....+. ... .+.++..
T Consensus 195 ~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~-----~~~~~~l~-------g~~---------------sL~el~a 247 (334)
T TIGR02195 195 HYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALL-----PGELRNLA-------GET---------------SLDEAVD 247 (334)
T ss_pred HHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhC-----CcccccCC-------CCC---------------CHHHHHH
Confidence 57789999988899999888876655444321100 00000000 001 1333333
Q ss_pred HHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEcc
Q 010617 99 EINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWP 136 (506)
Q Consensus 99 ~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~ 136 (506)
-++ +-|++|+.- ...+.+|..+|+|++.++.
T Consensus 248 li~-----~a~l~I~~D--SGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 248 LIA-----LAKAVVTND--SGLMHVAAALNRPLVALYG 278 (334)
T ss_pred HHH-----hCCEEEeeC--CHHHHHHHHcCCCEEEEEC
Confidence 332 358999764 5778899999999998653
No 342
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=37.07 E-value=1.9e+02 Score=27.71 Aligned_cols=93 Identities=18% Similarity=0.311 Sum_probs=51.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHH
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIE 83 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 83 (506)
||||++..-+-| ..|++.|.++|+ |.+-+.-.+...+.... ........ ..+ .+
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t~~g~~~~~~~------~~~~~v~~--G~l------g~------ 54 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVATSYGGELLKPE------LPGLEVRV--GRL------GD------ 54 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEEhhhhHhhhccc------cCCceEEE--CCC------CC------
Confidence 577777643334 578999999999 65544434433332110 00111111 111 01
Q ss_pred HHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcch-------HHHHHHHcCCceEEEc
Q 010617 84 KCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGW-------SMEIAKKMNVRGAVFW 135 (506)
Q Consensus 84 ~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~-------~~~~A~~lgIP~v~~~ 135 (506)
...+.+++.+ .++|+|| |..-+. +..+|+.+|||++.+-
T Consensus 55 ------~~~l~~~l~~------~~i~~vI-DATHPfA~~is~na~~a~~~~~ipylR~e 100 (249)
T PF02571_consen 55 ------EEGLAEFLRE------NGIDAVI-DATHPFAAEISQNAIEACRELGIPYLRFE 100 (249)
T ss_pred ------HHHHHHHHHh------CCCcEEE-ECCCchHHHHHHHHHHHHhhcCcceEEEE
Confidence 1124444555 7788766 554443 5678899999999964
No 343
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=36.98 E-value=2e+02 Score=26.98 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=24.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 41 (506)
|.++++ ++.|.+- ..+++.|+++|++|.++....
T Consensus 16 k~vlIt-Gas~gIG--~~ia~~l~~~G~~v~~~~~~~ 49 (258)
T PRK06935 16 KVAIVT-GGNTGLG--QGYAVALAKAGADIIITTHGT 49 (258)
T ss_pred CEEEEe-CCCchHH--HHHHHHHHHCCCEEEEEeCCc
Confidence 555555 4445444 788999999999999887653
No 344
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=36.39 E-value=1.5e+02 Score=28.67 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=18.3
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 010617 20 LLEFSQCLAKHGFRVTFVNTD 40 (506)
Q Consensus 20 ~l~La~~L~~rGh~Vt~~~~~ 40 (506)
-.++|+.|++|||+|.++.-.
T Consensus 19 G~~~A~~lA~~g~~liLvaR~ 39 (265)
T COG0300 19 GAELAKQLARRGYNLILVARR 39 (265)
T ss_pred HHHHHHHHHHCCCEEEEEeCc
Confidence 368999999999999998764
No 345
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=36.35 E-value=59 Score=29.57 Aligned_cols=44 Identities=18% Similarity=0.202 Sum_probs=34.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcchhHHHHh
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYNHKRVVES 49 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~v~~~ 49 (506)
||++.-.|+-| .+=...++++|.+ .||+|.++.++...+.+...
T Consensus 3 ~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~~ 47 (185)
T PRK06029 3 RLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLAHE 47 (185)
T ss_pred EEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHHH
Confidence 56655555555 7779999999999 59999999998888777653
No 346
>PRK10490 sensor protein KdpD; Provisional
Probab=36.25 E-value=1.5e+02 Score=34.18 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=34.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010617 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (506)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 40 (506)
+.||.+-..|+-|-.+.++.-|++|.++|++|.+-.-+
T Consensus 24 ~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e 61 (895)
T PRK10490 24 KLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVE 61 (895)
T ss_pred cEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEee
Confidence 56899999999999999999999999999999877554
No 347
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=36.24 E-value=1.3e+02 Score=30.39 Aligned_cols=146 Identities=16% Similarity=0.152 Sum_probs=83.1
Q ss_pred hhhhcCCCCceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEeccchhhh
Q 010617 301 KWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRV 380 (506)
Q Consensus 301 ~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~vpq~~l 380 (506)
+...++++|.|||++-|-.+. .+.....+.+|-++.-..+-+..... -.|+. ...|
T Consensus 123 ~iA~~nP~k~vVF~avGFETT-aP~~A~~i~~A~~~~~~Nfsvl~~hk-------l~PPa----------------~~~l 178 (364)
T PRK15062 123 KIARENPDKEVVFFAIGFETT-APATAATLLQAKAEGLKNFSVLSSHK-------LVPPA----------------MRAL 178 (364)
T ss_pred HHHHHCCCCeEEEEecCchhc-cHHHHHHHHHHHHcCCCCEEEEEecc-------ccHHH----------------HHHH
Confidence 445567778899999996543 34444555555544433433222111 12222 2345
Q ss_pred hcCC--CcceEEeccCchhHHHH-------HHcCCcEEeccCcc-----------cchhhHHhhhccceeeeEeecCCCC
Q 010617 381 LNHP--SIACFLSHCGWNSTMEG-------VSNGIPFLCWPYFG-----------DQFLNERYICDFWKVGLKFDRDEGG 440 (506)
Q Consensus 381 L~h~--~v~~~ItHgG~~sv~ea-------l~~GvP~v~~P~~~-----------DQ~~na~rv~~~lG~G~~l~~~~~~ 440 (506)
|..+ .+++||.-|=..++.-+ -.+|+|+++-.|.. .|..+.+.-.+ ......+.. .+
T Consensus 179 l~~~~~~idgfi~PGHVstI~G~~~y~~l~~~y~~P~VVaGFEp~DiL~ai~~lv~q~~~g~~~v~-N~Y~r~V~~--eG 255 (364)
T PRK15062 179 LEDPELRIDGFIAPGHVSTIIGTEPYEFLAEEYGIPVVVAGFEPLDILQSILMLVRQLEEGRAEVE-NQYTRVVKE--EG 255 (364)
T ss_pred HcCCCCCccEEEecCEeEEEeccchhHHHHHHcCCCeEEeccCHHHHHHHHHHHHHHHHCCCceEE-EccceeeCc--cc
Confidence 5544 36777777655444322 36799999998864 34444443333 244444443 35
Q ss_pred CcCHHHHHHHHHHHhCCh-----HHHHHHHHHHHHHHh
Q 010617 441 IITREEIKNKVDQVLGNQ-----DFKARALELKEKAMS 473 (506)
Q Consensus 441 ~~~~~~l~~ai~~vl~d~-----~~r~~a~~l~~~~~~ 473 (506)
+..+.++-+.+-++-+.. .+.+...++++++++
T Consensus 256 N~~A~~~i~~vFe~~d~~WRGlG~Ip~SGl~lr~ey~~ 293 (364)
T PRK15062 256 NLKAQELIAEVFEVRDAFWRGLGVIPNSGLRLREEYAA 293 (364)
T ss_pred CHHHHHHHHHHcCcCCCcccCCCccCchhhhhhHHHHh
Confidence 666666666666655433 567788888888887
No 348
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=35.88 E-value=4.3e+02 Score=28.81 Aligned_cols=144 Identities=15% Similarity=0.155 Sum_probs=77.0
Q ss_pred CCceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEeccchhhhhcCCCcc
Q 010617 308 PSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIA 387 (506)
Q Consensus 308 ~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~vpq~~lL~h~~v~ 387 (506)
+++.|-|-+||. .+...+++....|+..|..+-+.+..- ...|+.+. .++-+.+- ..++
T Consensus 409 ~~~~v~i~~gs~--sd~~~~~~~~~~l~~~g~~~~~~v~sa------hr~~~~~~----------~~~~~~~~---~~~~ 467 (577)
T PLN02948 409 GTPLVGIIMGSD--SDLPTMKDAAEILDSFGVPYEVTIVSA------HRTPERMF----------SYARSAHS---RGLQ 467 (577)
T ss_pred CCCeEEEEECch--hhHHHHHHHHHHHHHcCCCeEEEEECC------ccCHHHHH----------HHHHHHHH---CCCC
Confidence 345566667763 356677777888877777765555432 44555432 22222211 1233
Q ss_pred eEEeccCch----hHHHHHHcCCcEEeccCccc---chhhHHhhhccc--eeeeE-eecCCCCCcCHHHHHHHHHHHhCC
Q 010617 388 CFLSHCGWN----STMEGVSNGIPFLCWPYFGD---QFLNERYICDFW--KVGLK-FDRDEGGIITREEIKNKVDQVLGN 457 (506)
Q Consensus 388 ~~ItHgG~~----sv~eal~~GvP~v~~P~~~D---Q~~na~rv~~~l--G~G~~-l~~~~~~~~~~~~l~~ai~~vl~d 457 (506)
+||.-.|.- ++..++. -+|++.+|.... -.+--.-+.. + |+.+. +.. ++..++.-++..|.. +.|
T Consensus 468 v~i~~ag~~~~l~~~~a~~t-~~pvi~vp~~~~~~~g~~~l~s~~~-~p~g~pv~~v~i--~~~~~aa~~a~~i~~-~~~ 542 (577)
T PLN02948 468 VIIAGAGGAAHLPGMVASMT-PLPVIGVPVKTSHLDGLDSLLSIVQ-MPRGVPVATVAI--GNATNAGLLAVRMLG-ASD 542 (577)
T ss_pred EEEEEcCccccchHHHhhcc-CCCEEEcCCCCCCCCcHHHHHHHhc-CCCCCeEEEEec--CChHHHHHHHHHHHh-cCC
Confidence 488777753 3333332 589999998532 1211112222 3 43221 122 134455555544433 347
Q ss_pred hHHHHHHHHHHHHHHhhhhc
Q 010617 458 QDFKARALELKEKAMSSVRE 477 (506)
Q Consensus 458 ~~~r~~a~~l~~~~~~~~~~ 477 (506)
+.++++.+..++++++.+.+
T Consensus 543 ~~~~~~~~~~~~~~~~~~~~ 562 (577)
T PLN02948 543 PDLLDKMEAYQEDMRDMVLE 562 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 88999998888888875333
No 349
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=35.66 E-value=1.3e+02 Score=25.01 Aligned_cols=22 Identities=27% Similarity=0.135 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhCCCeEEEEeCC
Q 010617 19 PLLEFSQCLAKHGFRVTFVNTD 40 (506)
Q Consensus 19 p~l~La~~L~~rGh~Vt~~~~~ 40 (506)
.+-.+...|.++|++|++++-.
T Consensus 13 ~~gg~i~~~~~~g~~v~vv~~t 34 (128)
T PF02585_consen 13 GCGGTIAKLAEAGHRVVVVTLT 34 (128)
T ss_dssp HHHHHHHHHHHTT-EEEEEECE
T ss_pred hhHHHHHHHHhcCCeEEEEEec
Confidence 3444556788899998888543
No 350
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=35.60 E-value=1.5e+02 Score=27.85 Aligned_cols=44 Identities=20% Similarity=0.144 Sum_probs=35.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHH
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 48 (506)
-+++.-.|+.|...-...++.+-+++|..|.|++.+...+.+.+
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~ 66 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRR 66 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHH
Confidence 45677778889999899988777789999999999887765544
No 351
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=35.57 E-value=31 Score=30.28 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=24.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 41 (506)
||.++-.|..| .++|..|+++||+|++.+.+.
T Consensus 1 KI~ViGaG~~G-----~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWG-----TALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHH-----HHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHH-----HHHHHHHHHcCCEEEEEeccH
Confidence 34555544444 479999999999999999875
No 352
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=35.26 E-value=76 Score=33.60 Aligned_cols=54 Identities=13% Similarity=0.197 Sum_probs=38.2
Q ss_pred CcceEEeccCchhHHHHHHc----CCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCCh
Q 010617 385 SIACFLSHCGWNSTMEGVSN----GIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 458 (506)
Q Consensus 385 ~v~~~ItHgG~~sv~eal~~----GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~ 458 (506)
.++++|+=||-||+..|... ++|++.+-. - .+|..- .++.+++.++|.+++.++
T Consensus 262 ~~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN~--------G------~LGFLt------~i~~~e~~~~Le~il~G~ 319 (508)
T PLN02935 262 KVDLVITLGGDGTVLWAASMFKGPVPPVVPFSM--------G------SLGFMT------PFHSEQYRDCLDAILKGP 319 (508)
T ss_pred CCCEEEEECCcHHHHHHHHHhccCCCcEEEEeC--------C------Ccceec------ccCHHHHHHHHHHHHcCC
Confidence 34559999999999999774 567765521 1 144433 357899999999998654
No 353
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=34.98 E-value=2.1e+02 Score=27.14 Aligned_cols=101 Identities=13% Similarity=0.128 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhCC-CeEEEEeCCcch---hHHHHhhhcCCCCCCCeEEEecCC-CCCCCCCccCHHHHHHHHHHhCcH
Q 010617 17 VIPLLEFSQCLAKHG-FRVTFVNTDYNH---KRVVESLQGKNYLGEQIHLVSIPD-GMEPWEDRNDLGKLIEKCLQVMPG 91 (506)
Q Consensus 17 ~~p~l~La~~L~~rG-h~Vt~~~~~~~~---~~v~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 91 (506)
+.|..++.++|.+.| .+|.++++ +.. +.+.+.+.. .||+...+.. +...+. + +.+....
T Consensus 105 tt~~~A~~~AL~alg~~RIalvTP-Y~~~v~~~~~~~l~~-----~G~eV~~~~~~~~~~~~---~-------ia~i~p~ 168 (239)
T TIGR02990 105 VTPSSAAVDGLAALGVRRISLLTP-YTPETSRPMAQYFAV-----RGFEIVNFTCLGLTDDR---E-------MARISPD 168 (239)
T ss_pred eCHHHHHHHHHHHcCCCEEEEECC-CcHHHHHHHHHHHHh-----CCcEEeeeeccCCCCCc---e-------eeecCHH
Confidence 357888889999988 56777766 433 222222211 2666655532 221110 0 1112223
Q ss_pred HHHHHHHHHhcCCCCCccEEEecCCcchHHHHH----HHcCCceEEEcc
Q 010617 92 KLEELIEEINSREDEKIDCFIADGNIGWSMEIA----KKMNVRGAVFWP 136 (506)
Q Consensus 92 ~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A----~~lgIP~v~~~~ 136 (506)
.+.+.+.++.. ..+|.|+.-.....+..+. +.+|+|++....
T Consensus 169 ~i~~~~~~~~~---~~aDAifisCTnLrt~~vi~~lE~~lGkPVlsSNq 214 (239)
T TIGR02990 169 CIVEAALAAFD---PDADALFLSCTALRAATCAQRIEQAIGKPVVTSNQ 214 (239)
T ss_pred HHHHHHHHhcC---CCCCEEEEeCCCchhHHHHHHHHHHHCCCEEEHHH
Confidence 34444454433 5688888666555444443 456999988443
No 354
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=34.92 E-value=63 Score=33.36 Aligned_cols=46 Identities=24% Similarity=0.211 Sum_probs=35.5
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHH
Q 010617 2 SRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (506)
Q Consensus 2 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 48 (506)
+..||++.-.++. ..+-...+.+.|.++|++|.++.++...+.+..
T Consensus 5 ~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~ 50 (399)
T PRK05579 5 AGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVTP 50 (399)
T ss_pred CCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhH
Confidence 4567876554544 566789999999999999999999877766654
No 355
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=34.81 E-value=3.5e+02 Score=24.63 Aligned_cols=42 Identities=21% Similarity=0.097 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecC
Q 010617 18 IPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIP 66 (506)
Q Consensus 18 ~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~ 66 (506)
.-.-.|+..|+++||+|++.+.......-.. ...+++...++
T Consensus 21 T~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~-------~y~gv~l~~i~ 62 (185)
T PF09314_consen 21 TFVEELAPRLVSKGIDVTVYCRSDYYPYKEF-------EYNGVRLVYIP 62 (185)
T ss_pred HHHHHHHHHHhcCCceEEEEEccCCCCCCCc-------ccCCeEEEEeC
Confidence 4455678888889999999988655432211 12467777665
No 356
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=34.47 E-value=49 Score=31.15 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCC
Q 010617 16 HVIPLLEFSQCLAKHGFRVTFVNTD 40 (506)
Q Consensus 16 H~~p~l~La~~L~~rGh~Vt~~~~~ 40 (506)
|+..|.+.|++|.++||+|.++..+
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5678999999999999999999876
No 357
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=34.35 E-value=3.5e+02 Score=24.42 Aligned_cols=100 Identities=10% Similarity=-0.001 Sum_probs=52.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe---CC--cchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCH
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVN---TD--YNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDL 78 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~---~~--~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 78 (506)
--|.+.+..+.|-....+.+|-+-+-+|.+|.++= .. .....+.+.+ +++.+.....+..-.....+.
T Consensus 22 Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQFlKg~~~~GE~~~l~~~-------~~v~~~~~g~~~~~~~~~~~~ 94 (178)
T PRK07414 22 GLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLKGGIQQGPDRPIQLG-------QNLDWVRCDLPRCLDTPHLDE 94 (178)
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEEecCCCcchHHHHHHhC-------CCcEEEECCCCCeeeCCCcCH
Confidence 45678888888988877776666666777777662 11 1222222221 367777766432211111010
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcc
Q 010617 79 GKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG 118 (506)
Q Consensus 79 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~ 118 (506)
+.. +.....++...+.+.+ .++|+||.|-...
T Consensus 95 -~~~----~~~~~~~~~a~~~l~~---~~~dlvVLDEi~~ 126 (178)
T PRK07414 95 -SEK----KALQELWQYTQAVVDE---GRYSLVVLDELSL 126 (178)
T ss_pred -HHH----HHHHHHHHHHHHHHhC---CCCCEEEEehhHH
Confidence 111 1222233333334333 7899999997543
No 358
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=34.18 E-value=2e+02 Score=29.05 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=24.0
Q ss_pred hhcCCCcceEEeccCchh---HHHHHHcCCcEEe
Q 010617 380 VLNHPSIACFLSHCGWNS---TMEGVSNGIPFLC 410 (506)
Q Consensus 380 lL~h~~v~~~ItHgG~~s---v~eal~~GvP~v~ 410 (506)
++..-+-+++|++||.-| ...|...|+|+++
T Consensus 86 i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i 119 (352)
T PRK12446 86 RIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLL 119 (352)
T ss_pred HHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEE
Confidence 455333334999999986 8999999999986
No 359
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=34.05 E-value=97 Score=25.45 Aligned_cols=44 Identities=25% Similarity=0.241 Sum_probs=35.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHh
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 49 (506)
++..+.++..|......++..|.++|++|.++......+.+.+.
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~ 45 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEA 45 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHH
Confidence 56667788899999999999999999999999776555444443
No 360
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=33.94 E-value=1.8e+02 Score=25.82 Aligned_cols=106 Identities=20% Similarity=0.150 Sum_probs=57.4
Q ss_pred CCccCHHHH-HHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCC----------CCccCHHH
Q 010617 12 PAQGHVIPL-LEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPW----------EDRNDLGK 80 (506)
Q Consensus 12 ~~~GH~~p~-l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~----------~~~~~~~~ 80 (506)
...+.+..+ ..+|++|.++|++|.=++.......-.. ...+....++++.... .-.-|+..
T Consensus 7 ~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~~~--------~~~m~l~dl~~G~~~~IsQ~LG~gs~gCrLD~~~ 78 (159)
T PF10649_consen 7 DDGGDIDALLAAFAARLRARGVRVAGLVQRNTADGDGG--------RCDMDLRDLPSGRRIRISQDLGPGSRGCRLDPGA 78 (159)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCC--------ccceEEEECCCCCEEEEeeccCCCCcccccCHHH
Confidence 344555544 4689999999999987776442211111 1256666665433211 11223322
Q ss_pred HHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcc---------hHHHHHHHcCCceEEEccc
Q 010617 81 LIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG---------WSMEIAKKMNVRGAVFWPS 137 (506)
Q Consensus 81 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~---------~~~~~A~~lgIP~v~~~~~ 137 (506)
+-+. ...+...+. ..+|++|..=|-- ..+..|-..|||+++-.+.
T Consensus 79 La~A--------~~~l~~al~----~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~ 132 (159)
T PF10649_consen 79 LAEA--------SAALRRALA----EGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPP 132 (159)
T ss_pred HHHH--------HHHHHHHHh----cCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECH
Confidence 2211 122222332 4799999986643 2344566679999985544
No 361
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=33.68 E-value=80 Score=28.28 Aligned_cols=111 Identities=18% Similarity=0.238 Sum_probs=60.9
Q ss_pred cCHHHHHHHHHHH-HhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCC-------------CCCCC-------C
Q 010617 15 GHVIPLLEFSQCL-AKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPD-------------GMEPW-------E 73 (506)
Q Consensus 15 GH~~p~l~La~~L-~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~-------------~~~~~-------~ 73 (506)
+.+.-.+..|+.| .+.|.+|.+.-. .+...+++.. ++....++. ..... +
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG-~ta~~lr~~~--------~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~ 87 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRG-GTAELLRKHV--------SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPN 87 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEH-HHHHHHHCC---------SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECC-HHHHHHHHhC--------CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEeccc
Confidence 5667788889999 788899877655 4555555542 344443330 00000 0
Q ss_pred CccCHHHHHHHHHHh--------CcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHH
Q 010617 74 DRNDLGKLIEKCLQV--------MPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAAS 141 (506)
Q Consensus 74 ~~~~~~~~~~~~~~~--------~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~~~~~ 141 (506)
...+...+. ..+.. ....++..+.++.. .+.|+||.+. .+..+|+++|+|++.+.++.-+.
T Consensus 88 ~~~~~~~~~-~ll~~~i~~~~~~~~~e~~~~i~~~~~---~G~~viVGg~---~~~~~A~~~gl~~v~i~sg~esi 156 (176)
T PF06506_consen 88 IIPGLESIE-ELLGVDIKIYPYDSEEEIEAAIKQAKA---EGVDVIVGGG---VVCRLARKLGLPGVLIESGEESI 156 (176)
T ss_dssp -SCCHHHHH-HHHT-EEEEEEESSHHHHHHHHHHHHH---TT--EEEESH---HHHHHHHHTTSEEEESS--HHHH
T ss_pred ccHHHHHHH-HHhCCceEEEEECCHHHHHHHHHHHHH---cCCcEEECCH---HHHHHHHHcCCcEEEEEecHHHH
Confidence 111222222 22121 24567777777777 7899999995 35789999999999988755543
No 362
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=33.61 E-value=3.3e+02 Score=26.40 Aligned_cols=43 Identities=21% Similarity=0.310 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCCCCccEEEecCCcc--hHHHHHHHcCCceEEEccc
Q 010617 92 KLEELIEEINSREDEKIDCFIADGNIG--WSMEIAKKMNVRGAVFWPS 137 (506)
Q Consensus 92 ~~~~ll~~l~~~~~~~~DlvV~D~~~~--~~~~~A~~lgIP~v~~~~~ 137 (506)
.+.++++.++. .+..+|+++.... .+-.+|+..|++.+.+.+.
T Consensus 208 ~l~~l~~~ik~---~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~l 252 (282)
T cd01017 208 QLAELVEFVKK---SDVKYIFFEENASSKIAETLAKETGAKLLVLNPL 252 (282)
T ss_pred HHHHHHHHHHH---cCCCEEEEeCCCChHHHHHHHHHcCCcEEEeccc
Confidence 45556666665 7899999998766 5677999999999876543
No 363
>PRK06179 short chain dehydrogenase; Provisional
Probab=33.43 E-value=64 Score=30.73 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=26.3
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010617 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (506)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 40 (506)
|.+.+.++++. +.|-+ -.+++++|+++|++|+.+...
T Consensus 1 m~~~~~vlVtG-asg~i--G~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 1 MSNSKVALVTG-ASSGI--GRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred CCCCCEEEEec-CCCHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 55445566663 44544 468899999999999887754
No 364
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=33.29 E-value=2.9e+02 Score=27.62 Aligned_cols=86 Identities=16% Similarity=0.236 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCe--EEEecCCCCCCCCCccCHHHHHHHHHHhCcHHHHHH
Q 010617 19 PLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQI--HLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEEL 96 (506)
Q Consensus 19 p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 96 (506)
-+..|++.|.++|+.|.++..+...+..++..... .... ....+. ... .+.++
T Consensus 201 ~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~~---~~~~~~~~~~l~-------g~~---------------sL~el 255 (348)
T PRK10916 201 HYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAAL---NTEQQAWCRNLA-------GET---------------QLEQA 255 (348)
T ss_pred HHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHhc---ccccccceeecc-------CCC---------------CHHHH
Confidence 46889999988899998888766555443321100 0000 000000 000 13344
Q ss_pred HHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEcc
Q 010617 97 IEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWP 136 (506)
Q Consensus 97 l~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~ 136 (506)
..-+ .+-|++|+.- ...+.+|..+|+|++.++.
T Consensus 256 ~ali-----~~a~l~I~nD--TGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 256 VILI-----AACKAIVTND--SGLMHVAAALNRPLVALYG 288 (348)
T ss_pred HHHH-----HhCCEEEecC--ChHHHHHHHhCCCEEEEEC
Confidence 4443 2458999764 5778899999999999753
No 365
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=33.28 E-value=1.7e+02 Score=26.63 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecC
Q 010617 18 IPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIP 66 (506)
Q Consensus 18 ~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~ 66 (506)
.-+..||+.|.+.|+++. ++....+.+++. |+....+.
T Consensus 11 ~~l~~lAk~L~~lGf~I~--AT~GTAk~L~e~---------GI~v~~V~ 48 (187)
T cd01421 11 TGLVEFAKELVELGVEIL--STGGTAKFLKEA---------GIPVTDVS 48 (187)
T ss_pred ccHHHHHHHHHHCCCEEE--EccHHHHHHHHc---------CCeEEEhh
Confidence 457899999999999984 566788888886 56665554
No 366
>PRK04296 thymidine kinase; Provisional
Probab=33.21 E-value=96 Score=28.16 Aligned_cols=35 Identities=14% Similarity=0.259 Sum_probs=29.1
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeC
Q 010617 5 RVLVMPAP-AQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (506)
Q Consensus 5 ~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~ 39 (506)
.|.+++.+ +.|-..-++.++.++..+|..|.++.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 35566655 889999999999999999999998854
No 367
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=33.14 E-value=3.4e+02 Score=26.59 Aligned_cols=39 Identities=23% Similarity=0.370 Sum_probs=32.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 43 (506)
.|.++-.++.|-..-+..|+..|.++|+.|.++..+...
T Consensus 36 ~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 36 RVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 344666678899999999999999999999998876443
No 368
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=33.05 E-value=1.9e+02 Score=29.17 Aligned_cols=89 Identities=11% Similarity=0.129 Sum_probs=54.2
Q ss_pred HHHHHHHhhC--CCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEeccchhhhhcCCCcceEEe------ccCchhHH
Q 010617 328 QELALGLELC--KRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLS------HCGWNSTM 399 (506)
Q Consensus 328 ~~~~~al~~~--~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~vpq~~lL~h~~v~~~It------HgG~~sv~ 399 (506)
+..+.++... +.+++.++..+. .--..+-++.. +..|-...+++...++.++.. +-+.--+.
T Consensus 15 ~~h~~al~~~~~~~eLvaV~d~~~------erA~~~A~~~g----i~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~a~ 84 (343)
T TIGR01761 15 QFYLAAFAAAPERFELAGILAQGS------ERSRALAHRLG----VPLYCEVEELPDDIDIACVVVRSAIVGGQGSALAR 84 (343)
T ss_pred HHHHHHHHhCCCCcEEEEEEcCCH------HHHHHHHHHhC----CCccCCHHHHhcCCCEEEEEeCCCCCCccHHHHHH
Confidence 3456666554 367777775441 11111222221 224677888998888887875 23356788
Q ss_pred HHHHcCCcEEe-ccCcccchhhHHhhhc
Q 010617 400 EGVSNGIPFLC-WPYFGDQFLNERYICD 426 (506)
Q Consensus 400 eal~~GvP~v~-~P~~~DQ~~na~rv~~ 426 (506)
+||.+|+.++| -|+..++-.-..++.+
T Consensus 85 ~aL~aGkHVL~EKPla~~Ea~el~~~A~ 112 (343)
T TIGR01761 85 ALLARGIHVLQEHPLHPRDIQDLLRLAE 112 (343)
T ss_pred HHHhCCCeEEEcCCCCHHHHHHHHHHHH
Confidence 89999999999 8887554444444443
No 369
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=32.99 E-value=2.8e+02 Score=24.17 Aligned_cols=24 Identities=8% Similarity=0.217 Sum_probs=19.1
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcch
Q 010617 20 LLEFSQCLAKHGFRVTFVNTDYNH 43 (506)
Q Consensus 20 ~l~La~~L~~rGh~Vt~~~~~~~~ 43 (506)
...+.+.|.++|+.+.++|.....
T Consensus 90 ~~~~l~~l~~~g~~~~i~Tn~~~~ 113 (183)
T TIGR01509 90 VEPLLEALRARGKKLALLTNSPRD 113 (183)
T ss_pred HHHHHHHHHHCCCeEEEEeCCchH
Confidence 466778898999999999886544
No 370
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=32.83 E-value=90 Score=30.91 Aligned_cols=74 Identities=9% Similarity=0.080 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEeccchhhhhcCCCcceEEeccCchhHHHH
Q 010617 322 LDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEG 401 (506)
Q Consensus 322 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~vpq~~lL~h~~v~~~ItHgG~~sv~ea 401 (506)
.+.+..+.+.+|+.+...+.||.+.+..+ ..++.++++...+-+||.+ ||-.....+++-+
T Consensus 50 ~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g-----------------~~rlL~~lD~~~i~~~PK~--fiGySDiTaL~~a 110 (308)
T cd07062 50 SPEERAEELMAAFADPSIKAIIPTIGGDD-----------------SNELLPYLDYELIKKNPKI--FIGYSDITALHLA 110 (308)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEECCcccC-----------------HhhhhhhcCHHHHhhCCCE--EEeccHHHHHHHH
Confidence 35677888999999999999999976521 1235666676767677766 7777777777777
Q ss_pred HH--cCCcEEeccCc
Q 010617 402 VS--NGIPFLCWPYF 414 (506)
Q Consensus 402 l~--~GvP~v~~P~~ 414 (506)
++ .|++.+-=|..
T Consensus 111 l~~~~g~~t~hGp~~ 125 (308)
T cd07062 111 IYKKTGLVTYYGPNL 125 (308)
T ss_pred HHHhcCCeEEECccc
Confidence 74 26666555543
No 371
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=32.74 E-value=1.3e+02 Score=26.34 Aligned_cols=97 Identities=21% Similarity=0.127 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHh-CCCeEEEEeCCc---chhHHHHhhhcCCCCCCCe-EEEecCCCCCCCCCccCHHHHHHHHHHhCcHH
Q 010617 18 IPLLEFSQCLAK-HGFRVTFVNTDY---NHKRVVESLQGKNYLGEQI-HLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGK 92 (506)
Q Consensus 18 ~p~l~La~~L~~-rGh~Vt~~~~~~---~~~~v~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (506)
.-++..|++|++ .|.+|+.++... ..+.+++.+.. -+. +.+.+++..- ...+. ......
T Consensus 18 ~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~-----~G~d~v~~~~~~~~---~~~~~--------~~~a~~ 81 (164)
T PF01012_consen 18 LEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAK-----YGADKVYHIDDPAL---AEYDP--------EAYADA 81 (164)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHS-----TTESEEEEEE-GGG---TTC-H--------HHHHHH
T ss_pred HHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhh-----cCCcEEEEecCccc---cccCH--------HHHHHH
Confidence 346788999998 477877776542 23332222211 133 2223221110 00111 112223
Q ss_pred HHHHHHHHhcCCCCCccEEEecCCcc---hHHHHHHHcCCceEEEcc
Q 010617 93 LEELIEEINSREDEKIDCFIADGNIG---WSMEIAKKMNVRGAVFWP 136 (506)
Q Consensus 93 ~~~ll~~l~~~~~~~~DlvV~D~~~~---~~~~~A~~lgIP~v~~~~ 136 (506)
+.+++++ .+||+|++-.... .+..+|.++|.|++.-..
T Consensus 82 l~~~~~~------~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 82 LAELIKE------EGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp HHHHHHH------HT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred HHHHHHh------cCCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 4555555 6899999876555 478899999999998443
No 372
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=32.63 E-value=70 Score=32.89 Aligned_cols=48 Identities=15% Similarity=0.187 Sum_probs=36.2
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHh
Q 010617 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (506)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 49 (506)
|+..||++.-.|+ +...-...+.+.|.+.|++|.++.++...+.+...
T Consensus 1 l~~k~IllgiTGS-iaa~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~~ 48 (390)
T TIGR00521 1 LENKKILLGVTGG-IAAYKTVELVRELVRQGAEVKVIMTEAAKKFITPL 48 (390)
T ss_pred CCCCEEEEEEeCH-HHHHHHHHHHHHHHhCCCEEEEEECHhHHHHHHHH
Confidence 3456777655454 44466899999999999999999998877766543
No 373
>PLN02939 transferase, transferring glycosyl groups
Probab=32.60 E-value=73 Score=36.60 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=29.8
Q ss_pred CCEEEEEcCC-----Cc-cCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 010617 3 RPRVLVMPAP-----AQ-GHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (506)
Q Consensus 3 ~~~il~~~~~-----~~-GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 42 (506)
++||+|++.- -. |=-.-.-.|.++|+++||+|.++++.+.
T Consensus 481 ~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~ 526 (977)
T PLN02939 481 GLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYD 526 (977)
T ss_pred CCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 5899987732 12 3334566889999999999999999653
No 374
>PRK06270 homoserine dehydrogenase; Provisional
Probab=32.54 E-value=2.5e+02 Score=28.24 Aligned_cols=40 Identities=13% Similarity=0.167 Sum_probs=28.7
Q ss_pred chhhhhcCCCcceEEe------ccC---chhHHHHHHcCCcEEe---ccCcc
Q 010617 376 PQLRVLNHPSIACFLS------HCG---WNSTMEGVSNGIPFLC---WPYFG 415 (506)
Q Consensus 376 pq~~lL~h~~v~~~It------HgG---~~sv~eal~~GvP~v~---~P~~~ 415 (506)
+..++|..+.++++|- |+| ..-+.+||.+|+++|+ -|+..
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~ 131 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLAL 131 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHh
Confidence 5567887666666766 443 4456899999999999 47643
No 375
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=32.52 E-value=3.3e+02 Score=27.81 Aligned_cols=196 Identities=14% Similarity=0.125 Sum_probs=0.0
Q ss_pred cccccCCCCCCCCCCCccccchhhhhhhcCCC----CceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCC
Q 010617 277 GPLLASNRLGNTAGYFWCEDSNCLKWLDQQQP----SSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTD 352 (506)
Q Consensus 277 Gpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 352 (506)
|+++.+.........+...+..-..|+.+.+- +.-..||+ ..-+..-+..+++++...+.++.+.+.......
T Consensus 146 GGLLrE~~l~~~r~~f~~~~~~~~~~~~~lg~~~~~~~~~~vsl---F~Ye~~~l~~ll~~~~~~~~pv~llvp~g~~~~ 222 (374)
T PF10093_consen 146 GGLLREPDLLARRDAFQADPAARAAFLRRLGLPEPEPGALRVSL---FCYENAALASLLDAWAASPKPVHLLVPEGRALN 222 (374)
T ss_pred cceeccCcHHHHHHHHhcCHHHHHHHHHHcCCCCCCCCCeEEEE---EeCCchHHHHHHHHHhcCCCCeEEEecCCccHH
Q ss_pred CC-------CCCChhhHHhhcCCeEEEeccchh---hhhcCCCcceEEeccCchhHHHHHHcCCcEEeccCcccchhhHH
Q 010617 353 AN-------DRYPEGFQERVAARGQMISWAPQL---RVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNER 422 (506)
Q Consensus 353 ~~-------~~lp~~~~~~~~~n~~v~~~vpq~---~lL~h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~ 422 (506)
.. ...+.+...+-.=.+.+.+|+||. .+|-.++ +--==|==|...|..+|+|.|=-.+--|....-.
T Consensus 223 ~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD---~NfVRGEDSfVRAqwAgkPFvWhIYpQ~d~aHl~ 299 (374)
T PF10093_consen 223 SLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACD---FNFVRGEDSFVRAQWAGKPFVWHIYPQEDDAHLD 299 (374)
T ss_pred HHHHHhccccccCccccccCCeEEEECCCCCHHHHHHHHHhCc---cceEecchHHHHHHHhCCCceEecCcCchhhHHH
Q ss_pred hhhccceeeeEeecCCCCCcCHHHHHHHHHHH------------------hCChHHHHHHHHHHHHHHhhhhcCCChHHH
Q 010617 423 YICDFWKVGLKFDRDEGGIITREEIKNKVDQV------------------LGNQDFKARALELKEKAMSSVREGGSSYKT 484 (506)
Q Consensus 423 rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~v------------------l~d~~~r~~a~~l~~~~~~~~~~gg~~~~~ 484 (506)
+++.. +...... -+.+...++.++ -.-+..++.++..++.+.+ .+.-...
T Consensus 300 KL~AF--L~~y~~~------~~~~~~~a~~~~~~~wN~~~~~~~~w~~~~~~~~~~~~~a~~w~~~l~~----~~dLa~~ 367 (374)
T PF10093_consen 300 KLDAF--LDRYCAG------LPPEAAAALRAFWRAWNGGQDAPDAWQDLLEHLPEWQQHARAWRQQLLA----QGDLASN 367 (374)
T ss_pred HHHHH--HHHHhhc------CCHHHHHHHHHHHHHHhCCCCchhhHHHHHHHhHHHHHHHHHHHHHHHh----ccCHHHH
Q ss_pred HHHHHH
Q 010617 485 FQNFLQ 490 (506)
Q Consensus 485 ~~~~~~ 490 (506)
+..|++
T Consensus 368 L~~F~~ 373 (374)
T PF10093_consen 368 LVQFVE 373 (374)
T ss_pred HHHHHh
No 376
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.39 E-value=95 Score=30.45 Aligned_cols=53 Identities=13% Similarity=0.020 Sum_probs=36.3
Q ss_pred cceEEeccCchhHHHHHHc----CCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCCh
Q 010617 386 IACFLSHCGWNSTMEGVSN----GIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 458 (506)
Q Consensus 386 v~~~ItHgG~~sv~eal~~----GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~ 458 (506)
++++|+-||-||+..|... ++|++.+-.. .+|..- .++.+++.+++.+++.++
T Consensus 65 ~Dlvi~iGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFLt------~~~~~~~~~~l~~i~~g~ 121 (287)
T PRK14077 65 SDFLISLGGDGTLISLCRKAAEYDKFVLGIHAG--------------HLGFLT------DITVDEAEKFFQAFFQGE 121 (287)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCcEEEEeCC--------------CcccCC------cCCHHHHHHHHHHHHcCC
Confidence 4459999999999988663 6787755321 123322 356788888999888643
No 377
>PRK11914 diacylglycerol kinase; Reviewed
Probab=32.38 E-value=1.1e+02 Score=30.15 Aligned_cols=69 Identities=10% Similarity=0.041 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEeccchhhhhcCCCcceEEeccCchhHHHHH
Q 010617 323 DQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEGV 402 (506)
Q Consensus 323 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~vpq~~lL~h~~v~~~ItHgG~~sv~eal 402 (506)
..+.+..+.+.++..+..+.+..... +.... ..+ .+... ...+.+|--||-||+.|++
T Consensus 24 ~~~~~~~~~~~l~~~g~~~~~~~t~~---------~~~~~----------~~a-~~~~~--~~~d~vvv~GGDGTi~evv 81 (306)
T PRK11914 24 APHAAERAIARLHHRGVDVVEIVGTD---------AHDAR----------HLV-AAALA--KGTDALVVVGGDGVISNAL 81 (306)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEeCC---------HHHHH----------HHH-HHHHh--cCCCEEEEECCchHHHHHh
Confidence 34567778888888887765443222 11100 000 01112 2224499999999999987
Q ss_pred ----HcCCcEEeccC
Q 010617 403 ----SNGIPFLCWPY 413 (506)
Q Consensus 403 ----~~GvP~v~~P~ 413 (506)
..++|+-++|.
T Consensus 82 ~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 82 QVLAGTDIPLGIIPA 96 (306)
T ss_pred HHhccCCCcEEEEeC
Confidence 34799999995
No 378
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=31.86 E-value=3.7e+02 Score=26.56 Aligned_cols=31 Identities=26% Similarity=0.293 Sum_probs=21.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 39 (506)
|||+|+-.+. ..+...+.|.++||+|..+.+
T Consensus 1 mkIvf~G~~~-----~a~~~L~~L~~~~~~i~~Vvt 31 (309)
T PRK00005 1 MRIVFMGTPE-----FAVPSLKALLESGHEVVAVVT 31 (309)
T ss_pred CEEEEECCCH-----HHHHHHHHHHHCCCcEEEEEC
Confidence 5778774332 456778888888999887765
No 379
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=31.64 E-value=2.1e+02 Score=30.33 Aligned_cols=25 Identities=28% Similarity=0.185 Sum_probs=21.6
Q ss_pred CCccEEEecCCcchHHHHHHHcCCceEE
Q 010617 106 EKIDCFIADGNIGWSMEIAKKMNVRGAV 133 (506)
Q Consensus 106 ~~~DlvV~D~~~~~~~~~A~~lgIP~v~ 133 (506)
.+||++|.. .....+|+++|||++.
T Consensus 392 ~~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 392 AKADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred cCCCEEEec---CchhhhhhhcCCCEEE
Confidence 789999997 5567899999999984
No 380
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=31.63 E-value=89 Score=30.21 Aligned_cols=31 Identities=16% Similarity=0.127 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCcchhHHH
Q 010617 16 HVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVV 47 (506)
Q Consensus 16 H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 47 (506)
|---+.+|+++|.+.| +|+++.+...+....
T Consensus 12 ~apGi~aL~~al~~~g-~V~VvAP~~eqSg~g 42 (266)
T PRK13934 12 HSPGLRLLYEFVSPLG-EVDVVAPETPKSATG 42 (266)
T ss_pred CCHHHHHHHHHHHhCC-cEEEEccCCCCcccc
Confidence 3456788999998887 799998877665543
No 381
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=31.55 E-value=2.3e+02 Score=30.51 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=29.1
Q ss_pred CCccEEE----ecCCcchHHHHHHHcCCceEEEccchH
Q 010617 106 EKIDCFI----ADGNIGWSMEIAKKMNVRGAVFWPSSA 139 (506)
Q Consensus 106 ~~~DlvV----~D~~~~~~~~~A~~lgIP~v~~~~~~~ 139 (506)
..+|-+| ||=..+..+..|-+++||.+.+.-.+.
T Consensus 108 ~~~Dg~V~l~~CDK~~Pg~lMaaarlniPsi~v~gGpm 145 (552)
T PRK00911 108 HWFDGLVAIPGCDKNMPGMLMAAARLNVPSIFVYGGPI 145 (552)
T ss_pred CCcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCCc
Confidence 7889888 788888899999999999999876654
No 382
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=31.36 E-value=75 Score=30.49 Aligned_cols=37 Identities=24% Similarity=0.187 Sum_probs=30.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 40 (506)
|+|.+.-=|+-|-..-...||.+|+++|++|.++=-+
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D 37 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCD 37 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 4566776667789999999999999999999988443
No 383
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=31.26 E-value=4e+02 Score=24.13 Aligned_cols=44 Identities=16% Similarity=0.294 Sum_probs=34.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc-chhHHHHh
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY-NHKRVVES 49 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~-~~~~v~~~ 49 (506)
+++.-.|+.|-..-.+.++..++++|..|.|+.++. ..+.+.+.
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~ 59 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQI 59 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHH
Confidence 346667788999999999999999999999999975 44444443
No 384
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=31.17 E-value=4.7e+02 Score=24.93 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=34.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCC-CeEEEEeCCcchhHHHH
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHG-FRVTFVNTDYNHKRVVE 48 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rG-h~Vt~~~~~~~~~~v~~ 48 (506)
++|.++-=++.|-..-..-|+.+|.++| ++|..+=.+++...-..
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~~ 46 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEA 46 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChHHh
Confidence 5677887788888887777788998887 99999977665544333
No 385
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=31.15 E-value=2.1e+02 Score=26.40 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=22.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 39 (506)
+.+++ ++.|++ -..+++.|+++|++|+.+..
T Consensus 2 ~~lIt-G~sg~i--G~~la~~l~~~G~~v~~~~r 32 (242)
T TIGR01829 2 IALVT-GGMGGI--GTAICQRLAKDGYRVAANCG 32 (242)
T ss_pred EEEEE-CCCChH--HHHHHHHHHHCCCEEEEEeC
Confidence 34444 445666 45679999999999988765
No 386
>PRK06180 short chain dehydrogenase; Provisional
Probab=31.12 E-value=74 Score=30.55 Aligned_cols=37 Identities=16% Similarity=0.107 Sum_probs=25.6
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010617 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (506)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 40 (506)
|...+.++++ |+.|.+ -.++++.|+++||+|..+...
T Consensus 1 ~~~~~~vlVt-Gasggi--G~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 1 MSSMKTWLIT-GVSSGF--GRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CCCCCEEEEe-cCCChH--HHHHHHHHHhCcCEEEEEeCC
Confidence 4444455555 455544 567889999999999988764
No 387
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=31.07 E-value=2.6e+02 Score=28.79 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=21.3
Q ss_pred CCccEEEecCCcchHHHHHHHcCCceEEE
Q 010617 106 EKIDCFIADGNIGWSMEIAKKMNVRGAVF 134 (506)
Q Consensus 106 ~~~DlvV~D~~~~~~~~~A~~lgIP~v~~ 134 (506)
.+||++|... ....+|+++|||++..
T Consensus 355 ~~pDl~ig~s---~~~~~a~~~gip~~~~ 380 (410)
T cd01968 355 KKADLLVAGG---KERYLALKLGIPFCDI 380 (410)
T ss_pred cCCCEEEECC---cchhhHHhcCCCEEEc
Confidence 7899999984 3457899999999853
No 388
>PRK08226 short chain dehydrogenase; Provisional
Probab=31.05 E-value=2.6e+02 Score=26.32 Aligned_cols=34 Identities=12% Similarity=0.249 Sum_probs=23.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 41 (506)
+.++++. +.|-+ -..+++.|+++|++|+++....
T Consensus 7 ~~~lItG-~s~gi--G~~la~~l~~~G~~Vv~~~r~~ 40 (263)
T PRK08226 7 KTALITG-ALQGI--GEGIARVFARHGANLILLDISP 40 (263)
T ss_pred CEEEEeC-CCChH--HHHHHHHHHHCCCEEEEecCCH
Confidence 4555653 33433 3568999999999998886543
No 389
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=31.04 E-value=1.9e+02 Score=27.42 Aligned_cols=80 Identities=20% Similarity=0.312 Sum_probs=45.9
Q ss_pred CeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHHHHHHhCcHHHHHHHHHHhcCCCCCccEE
Q 010617 32 FRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCF 111 (506)
Q Consensus 32 h~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~Dlv 111 (506)
....++.++.+.-..+.. |+.....-. ..++ ...+ ...+.++.+.++. .+..+|
T Consensus 150 ~~~~v~~h~~~~Y~~~~~---------gl~~~~~~~-~~~~-~~ps------------~~~l~~l~~~ik~---~~v~~i 203 (256)
T PF01297_consen 150 GRPVVVYHDAFQYFAKRY---------GLKVIGVIE-ISPG-EEPS------------PKDLAELIKLIKE---NKVKCI 203 (256)
T ss_dssp GGEEEEEESTTHHHHHHT---------T-EEEEEES-SSSS-SSS-------------HHHHHHHHHHHHH---TT-SEE
T ss_pred CCeEEEEChHHHHHHHhc---------CCceeeeec-cccc-cCCC------------HHHHHHHHHHhhh---cCCcEE
Confidence 355566666666666555 676655441 1111 1111 1224444555555 889999
Q ss_pred EecCCcc--hHHHHHHHcCCceEEEccc
Q 010617 112 IADGNIG--WSMEIAKKMNVRGAVFWPS 137 (506)
Q Consensus 112 V~D~~~~--~~~~~A~~lgIP~v~~~~~ 137 (506)
+++.... .+-.+|+..|+|.+.+.+.
T Consensus 204 ~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 204 FTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp EEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred EecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 9998666 4778899999999886654
No 390
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=31.02 E-value=2.4e+02 Score=27.01 Aligned_cols=90 Identities=16% Similarity=0.247 Sum_probs=51.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHH
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIE 83 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 83 (506)
++||++..-+-| ..||+.|.++|+.|++-+...... ... .+..... ..+ .+
T Consensus 3 ~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~~~---------~~~~v~~--G~l------~~------ 53 (248)
T PRK08057 3 PRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-PAD---------LPGPVRV--GGF------GG------ 53 (248)
T ss_pred ceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-ccc---------CCceEEE--CCC------CC------
Confidence 356766533334 578999999999888765544333 110 1121111 111 01
Q ss_pred HHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcch-------HHHHHHHcCCceEEEc
Q 010617 84 KCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGW-------SMEIAKKMNVRGAVFW 135 (506)
Q Consensus 84 ~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~-------~~~~A~~lgIP~v~~~ 135 (506)
...+.+++.+ .++++|| |..-+. +..+++.+|||++.|-
T Consensus 54 ------~~~l~~~l~~------~~i~~VI-DATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 54 ------AEGLAAYLRE------EGIDLVI-DATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred ------HHHHHHHHHH------CCCCEEE-ECCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 1224444555 7888855 655453 5678999999999974
No 391
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=30.80 E-value=2.8e+02 Score=28.26 Aligned_cols=32 Identities=22% Similarity=0.448 Sum_probs=24.2
Q ss_pred CEEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010617 4 PRVLVMP-APAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (506)
Q Consensus 4 ~~il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 40 (506)
.+|.++- .|..|. .+|+.|.++||+|+++...
T Consensus 99 ~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCC
Confidence 5677764 555554 6889999999999998754
No 392
>PRK08589 short chain dehydrogenase; Validated
Probab=30.75 E-value=2.8e+02 Score=26.38 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=24.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 40 (506)
.+.++++.+ .|.+ -.++|+.|+++|++|.++...
T Consensus 6 ~k~vlItGa-s~gI--G~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 6 NKVAVITGA-STGI--GQASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CCEEEEECC-CchH--HHHHHHHHHHCCCEEEEEeCc
Confidence 356666633 3433 478999999999999988664
No 393
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.67 E-value=89 Score=30.94 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=38.4
Q ss_pred CcceEEeccCchhHHHHHHc----CCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCCh
Q 010617 385 SIACFLSHCGWNSTMEGVSN----GIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 458 (506)
Q Consensus 385 ~v~~~ItHgG~~sv~eal~~----GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~ 458 (506)
.++++|+=||-||+..|... ++|++.+-.. .+|..- .++.+++.+++.+++.+.
T Consensus 68 ~~Dlvi~iGGDGTlL~aar~~~~~~iPilGIN~G--------------~lGFLt------~~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 68 SMKFAIVLGGDGTVLSAARQLAPCGIPLLTINTG--------------HLGFLT------EAYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred CcCEEEEEeCcHHHHHHHHHhcCCCCcEEEEeCC--------------CCcccc------cCCHHHHHHHHHHHHcCC
Confidence 35569999999999999774 7888766421 233332 246788999999998654
No 394
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=30.49 E-value=76 Score=28.58 Aligned_cols=33 Identities=12% Similarity=0.175 Sum_probs=26.9
Q ss_pred cCHHH-HHHHHHHHHh-CCCeEEEEeCCcchhHHH
Q 010617 15 GHVIP-LLEFSQCLAK-HGFRVTFVNTDYNHKRVV 47 (506)
Q Consensus 15 GH~~p-~l~La~~L~~-rGh~Vt~~~~~~~~~~v~ 47 (506)
||... ...+.+.|.+ +||+|.++.++...+.++
T Consensus 10 g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 10 GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVK 44 (174)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHH
Confidence 77765 8899999985 699999999987776554
No 395
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=30.49 E-value=6.5e+02 Score=26.31 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=26.9
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeC
Q 010617 5 RVLVMPAP-AQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (506)
Q Consensus 5 ~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~ 39 (506)
+|++.... +.|-..-.+.|++.|.++|.+|..+-+
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~ 38 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKA 38 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEee
Confidence 35554443 449999999999999999999977743
No 396
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=30.48 E-value=44 Score=29.99 Aligned_cols=105 Identities=12% Similarity=0.225 Sum_probs=65.5
Q ss_pred CCceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEeccchhhhhcCCCcc
Q 010617 308 PSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIA 387 (506)
Q Consensus 308 ~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~vpq~~lL~h~~v~ 387 (506)
++.+-.+.+|... +.+++.++..|.+++..-... .... .... ....+.+..++++.+++
T Consensus 36 g~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~----------~~~~-~~~~--~~~~~~~l~ell~~aDi- 94 (178)
T PF02826_consen 36 GKTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSP----------KPEE-GADE--FGVEYVSLDELLAQADI- 94 (178)
T ss_dssp TSEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSC----------HHHH-HHHH--TTEEESSHHHHHHH-SE-
T ss_pred CCEEEEEEEcCCc-------CeEeeeeecCCceeEEecccC----------Chhh-hccc--ccceeeehhhhcchhhh-
Confidence 4668888888654 566677777888876555433 1100 0000 02266788899988887
Q ss_pred eEEeccCchhHHHHHHcCCcEEeccCc--ccchhhHHhhhccceee-eEeecCCCCCcCHHHHHHHHHH
Q 010617 388 CFLSHCGWNSTMEGVSNGIPFLCWPYF--GDQFLNERYICDFWKVG-LKFDRDEGGIITREEIKNKVDQ 453 (506)
Q Consensus 388 ~~ItHgG~~sv~eal~~GvP~v~~P~~--~DQ~~na~rv~~~lG~G-~~l~~~~~~~~~~~~l~~ai~~ 453 (506)
++.|+ |.. -.+..|+..++. ++=| +.++..+.+.++.++|.+++++
T Consensus 95 -v~~~~------------------plt~~T~~li~~~~l~~-mk~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 95 -VSLHL------------------PLTPETRGLINAEFLAK-MKPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp -EEE-S------------------SSSTTTTTSBSHHHHHT-STTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred -hhhhh------------------ccccccceeeeeeeeec-cccceEEEeccchhhhhhhHHHHHHhh
Confidence 77775 544 367788888887 5755 6667766677888888888763
No 397
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=30.45 E-value=3.8e+02 Score=23.57 Aligned_cols=31 Identities=19% Similarity=0.052 Sum_probs=25.2
Q ss_pred CCccEEEecCCcc---hHHHHHHHcCCceEEEcc
Q 010617 106 EKIDCFIADGNIG---WSMEIAKKMNVRGAVFWP 136 (506)
Q Consensus 106 ~~~DlvV~D~~~~---~~~~~A~~lgIP~v~~~~ 136 (506)
.+||+|++-.... .+..+|.++|.|++.-..
T Consensus 82 ~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~ 115 (168)
T cd01715 82 EKPSHILAGATSFGKDLAPRVAAKLDVGLISDVT 115 (168)
T ss_pred cCCCEEEECCCccccchHHHHHHHhCCCceeeEE
Confidence 6799999876554 588999999999998544
No 398
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=30.34 E-value=2.9e+02 Score=28.84 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=33.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHH-HhCCCeEEEEeCCcchhHHHH
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCL-AKHGFRVTFVNTDYNHKRVVE 48 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L-~~rGh~Vt~~~~~~~~~~v~~ 48 (506)
|+|+-.++.|-..-+..||..+ ..+|+.|.+++.+.+......
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~e 269 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIE 269 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHH
Confidence 4455556779999999999876 678999999999876654333
No 399
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=30.24 E-value=75 Score=30.06 Aligned_cols=43 Identities=12% Similarity=0.017 Sum_probs=31.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhHHHH
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYNHKRVVE 48 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~ 48 (506)
|++.-.|+.+=+.=.+.+.+.|.++ ||+|.++.++...+.+..
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~ 46 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRM 46 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhh
Confidence 4433323333346899999999999 999999999877766654
No 400
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=30.11 E-value=63 Score=29.17 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=31.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHH
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVV 47 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 47 (506)
||++.-.+ -+...-...+.+.|.++|++|.++.++...+.+.
T Consensus 2 ~I~lgvtG-s~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTG-SIAAYKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcC-HHHHHHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 45554434 4455566799999999999999999987666554
No 401
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=30.08 E-value=57 Score=29.38 Aligned_cols=44 Identities=11% Similarity=0.278 Sum_probs=32.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHH
Q 010617 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRV 46 (506)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v 46 (506)
+..+++.-.++.|-.+=..++++++.++|+.|.|++.+...+.+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL 90 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence 34677777788888888999999999999999999876555444
No 402
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=29.85 E-value=4.9e+02 Score=25.35 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=32.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHh
Q 010617 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (506)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 49 (506)
.++|+++-.|..|. .||+.|.++||.|.++.-+...+.....
T Consensus 3 ~~~v~IvG~GliG~-----s~a~~l~~~g~~v~i~g~d~~~~~~~~a 44 (279)
T COG0287 3 SMKVGIVGLGLMGG-----SLARALKEAGLVVRIIGRDRSAATLKAA 44 (279)
T ss_pred CcEEEEECCchHHH-----HHHHHHHHcCCeEEEEeecCcHHHHHHH
Confidence 46777777776665 5799999999999999888777655544
No 403
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=29.79 E-value=98 Score=33.52 Aligned_cols=82 Identities=12% Similarity=0.057 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEe--------ccchhhhhcCCCcceEEeccCc-
Q 010617 325 VQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMIS--------WAPQLRVLNHPSIACFLSHCGW- 395 (506)
Q Consensus 325 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~--------~vpq~~lL~h~~v~~~ItHgG~- 395 (506)
...+.+++.|++.|.+.+.-+.+. ...++-+.+.+ .++++.+. ++-.-.-..+...+++++|.|-
T Consensus 14 ~~~~~l~~~L~~~GV~~vFgvpG~----~~~~l~dal~~--~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG 87 (564)
T PRK08155 14 TGAELIVRLLERQGIRIVTGIPGG----AILPLYDALSQ--STQIRHILARHEQGAGFIAQGMARTTGKPAVCMACSGPG 87 (564)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCc----ccHHHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHHcCCCeEEEECCCCc
Confidence 346678888888888888777654 11122222210 12333221 1111111112234448888774
Q ss_pred -----hhHHHHHHcCCcEEecc
Q 010617 396 -----NSTMEGVSNGIPFLCWP 412 (506)
Q Consensus 396 -----~sv~eal~~GvP~v~~P 412 (506)
+.+.+|...++|+|++-
T Consensus 88 ~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 88 ATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred HHHHHHHHHHHHhcCCCEEEEe
Confidence 48999999999999984
No 404
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.48 E-value=1.1e+02 Score=29.96 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=37.7
Q ss_pred cceEEeccCchhHHHHHHc----CCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCCh
Q 010617 386 IACFLSHCGWNSTMEGVSN----GIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 458 (506)
Q Consensus 386 v~~~ItHgG~~sv~eal~~----GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~ 458 (506)
++++|+=||-||+..|... ++|++.+-.. .+|..- .++.+++.+++++++.+.
T Consensus 65 ~dlvi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFLt------~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 65 ADMVISIGGDGTFLRTATYVGNSNIPILGINTG--------------RLGFLA------TVSKEEIEETIDELLNGD 121 (292)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEecC--------------CCCccc------ccCHHHHHHHHHHHHcCC
Confidence 4459999999999999773 6788765421 133332 356888999999998654
No 405
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=29.33 E-value=2.6e+02 Score=30.21 Aligned_cols=26 Identities=8% Similarity=0.120 Sum_probs=21.8
Q ss_pred cceEEeccCc------hhHHHHHHcCCcEEec
Q 010617 386 IACFLSHCGW------NSTMEGVSNGIPFLCW 411 (506)
Q Consensus 386 v~~~ItHgG~------~sv~eal~~GvP~v~~ 411 (506)
..++++|.|- +.+.+|...++|+|++
T Consensus 72 ~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i 103 (557)
T PRK08199 72 PGICFVTRGPGATNASIGVHTAFQDSTPMILF 103 (557)
T ss_pred CEEEEeCCCccHHHHHHHHHHHhhcCCCEEEE
Confidence 4458999884 5889999999999987
No 406
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=29.24 E-value=82 Score=28.16 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=22.0
Q ss_pred CCccEEEecCCcc-h-HHHHHHHcCCceEEEc
Q 010617 106 EKIDCFIADGNIG-W-SMEIAKKMNVRGAVFW 135 (506)
Q Consensus 106 ~~~DlvV~D~~~~-~-~~~~A~~lgIP~v~~~ 135 (506)
.+||+||...... . ....-+..|||++.+.
T Consensus 68 l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 68 LKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred cCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 6999999865433 2 4455678899998874
No 407
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=29.23 E-value=2e+02 Score=31.38 Aligned_cols=27 Identities=7% Similarity=0.257 Sum_probs=22.2
Q ss_pred cceEEeccC------chhHHHHHHcCCcEEecc
Q 010617 386 IACFLSHCG------WNSTMEGVSNGIPFLCWP 412 (506)
Q Consensus 386 v~~~ItHgG------~~sv~eal~~GvP~v~~P 412 (506)
.+++++|.| .+.+.+|.+.++|+|++-
T Consensus 64 ~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 64 VGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 445888887 458899999999999883
No 408
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=29.13 E-value=93 Score=30.50 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=33.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 42 (506)
|||.|.-=|+-|-..-...||.+|+++|++|.++=.+..
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ 39 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPK 39 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 457777788889999999999999999999998866544
No 409
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.99 E-value=1.2e+02 Score=30.08 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=38.7
Q ss_pred cceEEeccCchhHHHHHHc----CCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCCh
Q 010617 386 IACFLSHCGWNSTMEGVSN----GIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 458 (506)
Q Consensus 386 v~~~ItHgG~~sv~eal~~----GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~ 458 (506)
++++|+=||-||+..|... ++|++.+... .+|..-+ +..+++.+++.+++.+.
T Consensus 73 ~D~vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL~~------~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 73 CELVLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGFLAE------AEAEDLDEAVERVVDRD 129 (306)
T ss_pred CCEEEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCceecc------CCHHHHHHHHHHHHcCC
Confidence 4459999999999998764 7888876531 2344433 46788999999998653
No 410
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=28.98 E-value=5.2e+02 Score=24.72 Aligned_cols=44 Identities=14% Similarity=0.234 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCCCCccEEEecCCcc--hHHHHHHHcCCceEEEccch
Q 010617 92 KLEELIEEINSREDEKIDCFIADGNIG--WSMEIAKKMNVRGAVFWPSS 138 (506)
Q Consensus 92 ~~~~ll~~l~~~~~~~~DlvV~D~~~~--~~~~~A~~lgIP~v~~~~~~ 138 (506)
.+.++++.+++ .+..+|+++.... .+-.+|+..|+|.+.+.+..
T Consensus 205 ~l~~l~~~ik~---~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~ 250 (266)
T cd01018 205 DLKRLIDLAKE---KGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLA 250 (266)
T ss_pred HHHHHHHHHHH---cCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcH
Confidence 35555666665 8899999998666 57789999999999887654
No 411
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=28.95 E-value=3.6e+02 Score=23.60 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcc
Q 010617 20 LLEFSQCLAKHGFRVTFVNTDYN 42 (506)
Q Consensus 20 ~l~La~~L~~rGh~Vt~~~~~~~ 42 (506)
...+-+.|.++|+.+.++|....
T Consensus 92 ~~~~L~~L~~~g~~~~i~s~~~~ 114 (185)
T TIGR01990 92 IKNLLDDLKKNNIKIALASASKN 114 (185)
T ss_pred HHHHHHHHHHCCCeEEEEeCCcc
Confidence 35677889999999999986543
No 412
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=28.77 E-value=2.4e+02 Score=30.05 Aligned_cols=45 Identities=16% Similarity=0.306 Sum_probs=36.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHh
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 49 (506)
-+++.-.++.|-..-...++.+.+++|..|.+++.....+.+.+.
T Consensus 275 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~ 319 (509)
T PRK09302 275 IILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRN 319 (509)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHH
Confidence 455666778899999999999999999999999998776665543
No 413
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.70 E-value=1.5e+02 Score=29.17 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=37.8
Q ss_pred cceEEeccCchhHHHHHH----cCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCCh
Q 010617 386 IACFLSHCGWNSTMEGVS----NGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 458 (506)
Q Consensus 386 v~~~ItHgG~~sv~eal~----~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~ 458 (506)
++++|+=||-||+..|.. .++|++.+-.. .+|..-+ ++.+++.+++.+++.+.
T Consensus 69 ~D~vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL~~------~~~~~~~~~l~~i~~g~ 125 (296)
T PRK04539 69 CDLVAVLGGDGTFLSVAREIAPRAVPIIGINQG--------------HLGFLTQ------IPREYMTDKLLPVLEGK 125 (296)
T ss_pred CCEEEEECCcHHHHHHHHHhcccCCCEEEEecC--------------CCeEeec------cCHHHHHHHHHHHHcCC
Confidence 445999999999999975 37888765421 1343332 46888999999998653
No 414
>PRK08177 short chain dehydrogenase; Provisional
Probab=28.66 E-value=3.2e+02 Score=24.97 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCc
Q 010617 19 PLLEFSQCLAKHGFRVTFVNTDY 41 (506)
Q Consensus 19 p~l~La~~L~~rGh~Vt~~~~~~ 41 (506)
--..+++.|+++|++|.++....
T Consensus 13 iG~~la~~l~~~G~~V~~~~r~~ 35 (225)
T PRK08177 13 LGLGLVDRLLERGWQVTATVRGP 35 (225)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCC
Confidence 34568999999999999887643
No 415
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=28.64 E-value=2.3e+02 Score=30.63 Aligned_cols=27 Identities=15% Similarity=0.363 Sum_probs=22.3
Q ss_pred cceEEeccC------chhHHHHHHcCCcEEecc
Q 010617 386 IACFLSHCG------WNSTMEGVSNGIPFLCWP 412 (506)
Q Consensus 386 v~~~ItHgG------~~sv~eal~~GvP~v~~P 412 (506)
..++++|.| .+.+++|.+.++|+|++-
T Consensus 65 ~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 65 VGVVLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 445888887 458899999999999984
No 416
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=28.59 E-value=84 Score=32.37 Aligned_cols=40 Identities=20% Similarity=0.290 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCCCccEEEecCCcch----------HHHHHHHcCCceEEEc
Q 010617 93 LEELIEEINSREDEKIDCFIADGNIGW----------SMEIAKKMNVRGAVFW 135 (506)
Q Consensus 93 ~~~ll~~l~~~~~~~~DlvV~D~~~~~----------~~~~A~~lgIP~v~~~ 135 (506)
.+++++-+++ .+||++|+-+.+.+ +..+.+++|||.++-.
T Consensus 65 ~~~i~~mv~k---~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 65 VARVLEMLKD---KEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred HHHHHHHHHh---cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 3455555554 89999999886653 2245677999999843
No 417
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=28.57 E-value=84 Score=32.39 Aligned_cols=40 Identities=15% Similarity=0.254 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCCCccEEEecCCcch----------HHHHHHHcCCceEEEc
Q 010617 93 LEELIEEINSREDEKIDCFIADGNIGW----------SMEIAKKMNVRGAVFW 135 (506)
Q Consensus 93 ~~~ll~~l~~~~~~~~DlvV~D~~~~~----------~~~~A~~lgIP~v~~~ 135 (506)
.+++++-++. .+||++|+-+.+.+ +..+.+++|||.++-.
T Consensus 65 ~~~i~~mv~k---~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 65 KAKVLEMIKG---ANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHHHHHHh---cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 3455555554 89999999886653 2245677999999843
No 418
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=28.51 E-value=2.2e+02 Score=25.88 Aligned_cols=65 Identities=23% Similarity=0.337 Sum_probs=41.8
Q ss_pred CE-EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc---chhHHHHhhhcCCCCCCCeEEEecCCCC
Q 010617 4 PR-VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY---NHKRVVESLQGKNYLGEQIHLVSIPDGM 69 (506)
Q Consensus 4 ~~-il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~---~~~~v~~~~~~~~~~~~~i~~~~~~~~~ 69 (506)
.+ |+|+..+..-|-.-+..+++.|++.|.+|.+++-.. +.+.++... .+.....+-+|+.+|.+.
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~-~~~~~~~~s~~~~~~~~~ 176 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFI-DAVNGKDGSHLVSVPPGE 176 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHH-HHhcCCCCceEEEeCCCC
Confidence 35 557888877787778889999999998888886553 333333222 222233457777777543
No 419
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=28.44 E-value=4.3e+02 Score=23.60 Aligned_cols=96 Identities=15% Similarity=0.194 Sum_probs=47.1
Q ss_pred HHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHHHHHHhCcHHHHHHHHHH
Q 010617 21 LEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELIEEI 100 (506)
Q Consensus 21 l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l 100 (506)
..+.+.|.++|+.+.++|..... .+...+... ....-+..+-..+.... .+ -....+...++.+
T Consensus 98 ~~~L~~L~~~g~~~~i~Sn~~~~-~~~~~l~~~-gl~~~fd~i~~s~~~~~---~K-----------P~~~~~~~~~~~~ 161 (198)
T TIGR01428 98 PAGLRALKERGYRLAILSNGSPA-MLKSLVKHA-GLDDPFDAVLSADAVRA---YK-----------PAPQVYQLALEAL 161 (198)
T ss_pred HHHHHHHHHCCCeEEEEeCCCHH-HHHHHHHHC-CChhhhheeEehhhcCC---CC-----------CCHHHHHHHHHHh
Confidence 45667888899999999885432 232222111 00001111111111100 00 0112233444444
Q ss_pred hcCCCCCccEEEecCCcchHHHHHHHcCCceEEEcc
Q 010617 101 NSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWP 136 (506)
Q Consensus 101 ~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~ 136 (506)
.- .+-++++++-.. .....|+..|++++.+..
T Consensus 162 ~~---~p~~~~~vgD~~-~Di~~A~~~G~~~i~v~r 193 (198)
T TIGR01428 162 GV---PPDEVLFVASNP-WDLGGAKKFGFKTAWVNR 193 (198)
T ss_pred CC---ChhhEEEEeCCH-HHHHHHHHCCCcEEEecC
Confidence 32 233555554343 788889999999988654
No 420
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.26 E-value=1.1e+02 Score=26.90 Aligned_cols=45 Identities=9% Similarity=0.072 Sum_probs=32.2
Q ss_pred HHHHHHHHhc-CCCCCccEEEecCCcc----------hHHHHHHHcCCceEEEccc
Q 010617 93 LEELIEEINS-REDEKIDCFIADGNIG----------WSMEIAKKMNVRGAVFWPS 137 (506)
Q Consensus 93 ~~~ll~~l~~-~~~~~~DlvV~D~~~~----------~~~~~A~~lgIP~v~~~~~ 137 (506)
++.++.+|+. .-|+.||+|++..-.- -+..+|+++|+|++-.+..
T Consensus 109 vrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~ 164 (219)
T KOG0081|consen 109 VRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSAC 164 (219)
T ss_pred HHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccc
Confidence 4667777765 3358999999864221 3778999999999885443
No 421
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=28.19 E-value=4.8e+02 Score=24.02 Aligned_cols=145 Identities=10% Similarity=0.067 Sum_probs=74.1
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhh-cCCeEEEeccchhhhhcCCCcc
Q 010617 309 SSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERV-AARGQMISWAPQLRVLNHPSIA 387 (506)
Q Consensus 309 ~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~-~~n~~v~~~vpq~~lL~h~~v~ 387 (506)
+.+++|..|.+. ..-+..|...|.++.++-... .+.+.+-. ..++.+..--.+...+....+
T Consensus 10 k~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~~---------~~~l~~l~~~~~i~~~~~~~~~~dl~~~~l- 72 (205)
T TIGR01470 10 RAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEEL---------ESELTLLAEQGGITWLARCFDADILEGAFL- 72 (205)
T ss_pred CeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCCC---------CHHHHHHHHcCCEEEEeCCCCHHHhCCcEE-
Confidence 568888777543 333455556777765443221 12221111 234544321122344544444
Q ss_pred eEEeccCchhHHH-----HHHcCCcEE--eccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCCh--
Q 010617 388 CFLSHCGWNSTME-----GVSNGIPFL--CWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ-- 458 (506)
Q Consensus 388 ~~ItHgG~~sv~e-----al~~GvP~v--~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~-- 458 (506)
+|..-|...+.+ |-..|+|+- --|-..| +..-..+.+. ++-+.+..++..-.-+..|++.|.+++.+.
T Consensus 73 -Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~g-~l~iaisT~G~sP~la~~lr~~ie~~l~~~~~ 149 (205)
T TIGR01470 73 -VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDRS-PVVVAISSGGAAPVLARLLRERIETLLPPSLG 149 (205)
T ss_pred -EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEcC-CEEEEEECCCCCcHHHHHHHHHHHHhcchhHH
Confidence 777777764444 345788883 3343333 2233333332 344444443323334577888898888532
Q ss_pred HHHHHHHHHHHHHHh
Q 010617 459 DFKARALELKEKAMS 473 (506)
Q Consensus 459 ~~r~~a~~l~~~~~~ 473 (506)
.+-+-+.++++.+++
T Consensus 150 ~~~~~~~~~R~~~k~ 164 (205)
T TIGR01470 150 DLATLAATWRDAVKK 164 (205)
T ss_pred HHHHHHHHHHHHHHh
Confidence 455555556665554
No 422
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=28.19 E-value=3.4e+02 Score=25.47 Aligned_cols=35 Identities=14% Similarity=0.228 Sum_probs=24.6
Q ss_pred CCEEEEEcCCCc-cCHHHHHHHHHHHHhCCCeEEEEeC
Q 010617 3 RPRVLVMPAPAQ-GHVIPLLEFSQCLAKHGFRVTFVNT 39 (506)
Q Consensus 3 ~~~il~~~~~~~-GH~~p~l~La~~L~~rGh~Vt~~~~ 39 (506)
+.|+.+++..+. +-+ -.++|++|+++|++|.+..-
T Consensus 6 ~~k~~lItGas~~~gI--G~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 6 SGKKIVVMGVANKRSI--AWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CCCEEEEeCCCCCCch--HHHHHHHHHHCCCEEEEecC
Confidence 346777775542 222 37899999999999988754
No 423
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=28.00 E-value=1.9e+02 Score=27.13 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=30.4
Q ss_pred EEEcCCCccCHHHHHHHHHHHHh------------CCCeEEEEeCCcchhHHHH
Q 010617 7 LVMPAPAQGHVIPLLEFSQCLAK------------HGFRVTFVNTDYNHKRVVE 48 (506)
Q Consensus 7 l~~~~~~~GH~~p~l~La~~L~~------------rGh~Vt~~~~~~~~~~v~~ 48 (506)
+++..|+.|--.-.+.+|-+.+. ++-.|.+++.+...+.+.+
T Consensus 5 ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~ 58 (239)
T cd01125 5 ALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHR 58 (239)
T ss_pred EEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHH
Confidence 45666777888888888877653 5678999998876654443
No 424
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=27.97 E-value=2.5e+02 Score=30.58 Aligned_cols=27 Identities=7% Similarity=0.112 Sum_probs=22.2
Q ss_pred cceEEeccC------chhHHHHHHcCCcEEecc
Q 010617 386 IACFLSHCG------WNSTMEGVSNGIPFLCWP 412 (506)
Q Consensus 386 v~~~ItHgG------~~sv~eal~~GvP~v~~P 412 (506)
.+++++|.| .+.+.+|...++|+|++-
T Consensus 69 ~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 69 MGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 445899888 457889999999999985
No 425
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=27.81 E-value=4.1e+02 Score=25.38 Aligned_cols=86 Identities=14% Similarity=0.207 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHHHHHHhCcHHHHHHH
Q 010617 18 IPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELI 97 (506)
Q Consensus 18 ~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 97 (506)
.-+..|++.|.++|+.|.++..+...+..+...... .+-....+. ...+ +.+++
T Consensus 140 ~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~~----~~~~~~~~~-------~~~~---------------l~e~~ 193 (279)
T cd03789 140 ERFAALADRLLARGARVVLTGGPAERELAEEIAAAL----GGPRVVNLA-------GKTS---------------LRELA 193 (279)
T ss_pred HHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHHhc----CCCccccCc-------CCCC---------------HHHHH
Confidence 467889999999999999988876555544432100 000000000 0011 33333
Q ss_pred HHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEcc
Q 010617 98 EEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWP 136 (506)
Q Consensus 98 ~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~ 136 (506)
.-+. +-|++|+-- .....+|..+|+|++.++.
T Consensus 194 ~li~-----~~~l~I~~D--sg~~HlA~a~~~p~i~l~g 225 (279)
T cd03789 194 ALLA-----RADLVVTND--SGPMHLAAALGTPTVALFG 225 (279)
T ss_pred HHHH-----hCCEEEeeC--CHHHHHHHHcCCCEEEEEC
Confidence 3332 358888753 4777888899999999764
No 426
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=27.78 E-value=2.9e+02 Score=29.90 Aligned_cols=27 Identities=7% Similarity=0.112 Sum_probs=21.8
Q ss_pred cceEEeccC------chhHHHHHHcCCcEEecc
Q 010617 386 IACFLSHCG------WNSTMEGVSNGIPFLCWP 412 (506)
Q Consensus 386 v~~~ItHgG------~~sv~eal~~GvP~v~~P 412 (506)
..++++|.| .+.+.+|...++|||++-
T Consensus 69 ~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 69 PGVCTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 344888877 457899999999999985
No 427
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=27.77 E-value=1.5e+02 Score=25.48 Aligned_cols=37 Identities=22% Similarity=0.208 Sum_probs=28.8
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEc
Q 010617 309 SSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVR 346 (506)
Q Consensus 309 ~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~ 346 (506)
..+|++++||......+.++.+++.+. .+.+++++..
T Consensus 51 ~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~ 87 (150)
T cd01840 51 RKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNP 87 (150)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEEC
Confidence 459999999987667888888988885 3567776654
No 428
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=27.71 E-value=84 Score=26.97 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=22.6
Q ss_pred HHHHHHHHhCCCeEEEEeCCcchhHHHHh
Q 010617 21 LEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (506)
Q Consensus 21 l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 49 (506)
.-+|..|+++||+|++++.....+.+.+.
T Consensus 11 ~~~a~~L~~~g~~V~l~~r~~~~~~~~~~ 39 (151)
T PF02558_consen 11 SLYAARLAQAGHDVTLVSRSPRLEAIKEQ 39 (151)
T ss_dssp HHHHHHHHHTTCEEEEEESHHHHHHHHHH
T ss_pred HHHHHHHHHCCCceEEEEccccHHhhhhe
Confidence 34788999999999999997744556555
No 429
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=27.64 E-value=1.1e+02 Score=26.87 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=24.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010617 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (506)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 41 (506)
..+|+++-.+.-| ...++.|.+.|++|+++++..
T Consensus 13 ~~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp~~ 46 (157)
T PRK06719 13 NKVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSPEI 46 (157)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcCcc
Confidence 3466666433323 678999999999999996543
No 430
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=27.62 E-value=1.2e+02 Score=25.94 Aligned_cols=41 Identities=15% Similarity=0.162 Sum_probs=31.9
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHH
Q 010617 8 VMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (506)
Q Consensus 8 ~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 48 (506)
++..+..--++|..-++...+++|++|+++.+--....+.+
T Consensus 8 Il~SG~~dk~~~a~iias~A~A~G~EV~VF~TfwGL~~l~K 48 (137)
T COG2210 8 ILASGTLDKAYAALIIASGAAAMGYEVTVFFTFWGLMALRK 48 (137)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeHHHHHHhhc
Confidence 45557778999999999999999999999988433333433
No 431
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=27.60 E-value=1.3e+02 Score=24.96 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=33.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 41 (506)
||++..-++.|-......+++.|+++|.+|.++-.+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4778888899999999999999999999999988766
No 432
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=27.54 E-value=1e+02 Score=31.40 Aligned_cols=70 Identities=13% Similarity=0.227 Sum_probs=45.0
Q ss_pred cceEEeccCchhHHHHHHc-----------------CCcEEeccCcccchhhHHhhhccceeeeEe-ecCCCCCcCHHHH
Q 010617 386 IACFLSHCGWNSTMEGVSN-----------------GIPFLCWPYFGDQFLNERYICDFWKVGLKF-DRDEGGIITREEI 447 (506)
Q Consensus 386 v~~~ItHgG~~sv~eal~~-----------------GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l-~~~~~~~~~~~~l 447 (506)
...++|.||..+.+-|+.+ +.|++.++-.. ++-+.+-. +.+|+|+.. +.+++..++.++|
T Consensus 104 ~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Kaa-~~lGlg~~~I~~~~~~~md~~~L 181 (373)
T PF00282_consen 104 AGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKAA-RILGLGVRKIPTDEDGRMDIEAL 181 (373)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHH-HHTTSEEEEE-BBTTSSB-HHHH
T ss_pred CceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHhc-ceeeeEEEEecCCcchhhhHHHh
Confidence 5679999998888777533 24566666544 33333333 337898444 3456678999999
Q ss_pred HHHHHHHhCC
Q 010617 448 KNKVDQVLGN 457 (506)
Q Consensus 448 ~~ai~~vl~d 457 (506)
.++|.+...+
T Consensus 182 ~~~l~~~~~~ 191 (373)
T PF00282_consen 182 EKALEKDIAN 191 (373)
T ss_dssp HHHHHHHHHT
T ss_pred hhhhcccccc
Confidence 9999887643
No 433
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=27.26 E-value=1.8e+02 Score=28.21 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=20.2
Q ss_pred cceEEeccCchhHHHHHHc-----CCcEE-eccC
Q 010617 386 IACFLSHCGWNSTMEGVSN-----GIPFL-CWPY 413 (506)
Q Consensus 386 v~~~ItHgG~~sv~eal~~-----GvP~v-~~P~ 413 (506)
.+++|.-||-||+.|++.. ..|.+ ++|.
T Consensus 58 ~d~ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 58 VDTVIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred CCEEEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 3459999999999996543 34444 5996
No 434
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=27.24 E-value=95 Score=29.76 Aligned_cols=37 Identities=24% Similarity=0.213 Sum_probs=30.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 40 (506)
|.|.|.-=|+-|...-...||..|+++|++|.++=.+
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 4566666667799999999999999999999988444
No 435
>PHA02754 hypothetical protein; Provisional
Probab=27.11 E-value=89 Score=22.27 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=18.8
Q ss_pred HHHHhCChHHHHHHHHHHHHHHhh
Q 010617 451 VDQVLGNQDFKARALELKEKAMSS 474 (506)
Q Consensus 451 i~~vl~d~~~r~~a~~l~~~~~~~ 474 (506)
+.+++-+.+|++..+++++.+.++
T Consensus 7 i~k~i~eK~Fke~MRelkD~LSe~ 30 (67)
T PHA02754 7 IPKAIMEKDFKEAMRELKDILSEA 30 (67)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhC
Confidence 344555789999999999999873
No 436
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=27.02 E-value=94 Score=32.33 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=29.4
Q ss_pred CCEEEEEcCCCccCH-----HHHHHHHHHHHhCCCeEEEEeCCc
Q 010617 3 RPRVLVMPAPAQGHV-----IPLLEFSQCLAKHGFRVTFVNTDY 41 (506)
Q Consensus 3 ~~~il~~~~~~~GH~-----~p~l~La~~L~~rGh~Vt~~~~~~ 41 (506)
..||+++| +||=. +...+|++.|.+||.+|.|..+|-
T Consensus 306 A~~ViIVP--GYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHPV 347 (462)
T PRK09444 306 SHSVIITP--GYGMAVAQAQYPVAEITEKLRARGINVRFGIHPV 347 (462)
T ss_pred CCcEEEEC--ChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 35788887 55433 578899999999999999998863
No 437
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=26.91 E-value=52 Score=23.64 Aligned_cols=55 Identities=20% Similarity=0.440 Sum_probs=31.5
Q ss_pred ecCCCCCcCHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHH
Q 010617 435 DRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQ 490 (506)
Q Consensus 435 ~~~~~~~~~~~~l~~ai~~vl~d~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~ 490 (506)
+.++++.++.+++.+.+..+..... .+...++.+.+-+.++..++..-++++|++
T Consensus 10 D~d~~G~i~~~el~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~ 64 (66)
T PF13499_consen 10 DKDGDGYISKEELRRALKHLGRDMS-DEESDEMIDQIFREFDTDGDGRISFDEFLN 64 (66)
T ss_dssp STTSSSEEEHHHHHHHHHHTTSHST-HHHHHHHHHHHHHHHTTTSSSSEEHHHHHH
T ss_pred cCCccCCCCHHHHHHHHHHhccccc-HHHHHHHHHHHHHHhCCCCcCCCcHHHHhc
Confidence 4456788999999999999975321 222332333333334455555445555544
No 438
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=26.82 E-value=4.5e+02 Score=23.31 Aligned_cols=30 Identities=20% Similarity=0.065 Sum_probs=24.6
Q ss_pred CCccEEEecCCcc---hHHHHHHHcCCceEEEc
Q 010617 106 EKIDCFIADGNIG---WSMEIAKKMNVRGAVFW 135 (506)
Q Consensus 106 ~~~DlvV~D~~~~---~~~~~A~~lgIP~v~~~ 135 (506)
.+||+|++-.... .+..+|.++|.|++.=.
T Consensus 90 ~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv 122 (181)
T cd01985 90 EKPDLILAGATSIGKQLAPRVAALLGVPQISDV 122 (181)
T ss_pred hCCCEEEECCcccccCHHHHHHHHhCCCcceeE
Confidence 5799999877555 58899999999999843
No 439
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=26.80 E-value=1.4e+02 Score=28.56 Aligned_cols=46 Identities=28% Similarity=0.378 Sum_probs=39.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhh
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESL 50 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~ 50 (506)
.+|+.-.|+.|...-..+++...+++|..|.+++.....+.+.+..
T Consensus 25 ~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~ 70 (260)
T COG0467 25 VVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENA 70 (260)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHH
Confidence 4567778899999999999999999999999999998777766554
No 440
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=26.68 E-value=1.2e+02 Score=29.67 Aligned_cols=40 Identities=33% Similarity=0.309 Sum_probs=27.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHH
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 48 (506)
|||+++-.+..| ..+|..|+++||+|+++..+...+.+.+
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~~~~~~~~~ 40 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRPKRAKALRE 40 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEecHHHHHHHHh
Confidence 467777666555 4578889999999999987333333433
No 441
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.65 E-value=1.2e+02 Score=29.82 Aligned_cols=53 Identities=9% Similarity=0.065 Sum_probs=36.6
Q ss_pred cceEEeccCchhHHHHHH----cCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCCh
Q 010617 386 IACFLSHCGWNSTMEGVS----NGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 458 (506)
Q Consensus 386 v~~~ItHgG~~sv~eal~----~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~ 458 (506)
++++|+=||-||+..|.. .++|++.+-.. .+|..- .++++++.+++++++.+.
T Consensus 64 ~d~vi~lGGDGT~L~aa~~~~~~~~Pilgin~G--------------~lGFl~------~~~~~~~~~~l~~i~~g~ 120 (292)
T PRK03378 64 ADLAIVVGGDGNMLGAARVLARYDIKVIGINRG--------------NLGFLT------DLDPDNALQQLSDVLEGH 120 (292)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCeEEEEECC--------------CCCccc------ccCHHHHHHHHHHHHcCC
Confidence 455999999999999975 36777655421 123322 246788999999998643
No 442
>PRK13604 luxD acyl transferase; Provisional
Probab=26.61 E-value=1.2e+02 Score=30.13 Aligned_cols=34 Identities=12% Similarity=0.232 Sum_probs=27.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFV 37 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~ 37 (506)
...+++..+..++-.-+..+|+.|+++|+.|.-+
T Consensus 37 ~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 37 NNTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 3566777777777777999999999999998765
No 443
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=26.33 E-value=6e+02 Score=24.57 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=32.9
Q ss_pred CEEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 010617 4 PRVLVMPA-PAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHK 44 (506)
Q Consensus 4 ~~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 44 (506)
.|..|+-. ++-|...-...||-.|++-+|.|.++++++.+.
T Consensus 19 lKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHN 60 (323)
T KOG2825|consen 19 LKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHN 60 (323)
T ss_pred eeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccc
Confidence 45666653 345888999999999999999999999987664
No 444
>PRK07206 hypothetical protein; Provisional
Probab=26.27 E-value=2.6e+02 Score=28.66 Aligned_cols=32 Identities=13% Similarity=0.177 Sum_probs=22.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 41 (506)
+++++-.... ...+++++.++|+++.++....
T Consensus 4 ~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 4 KVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred eEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 4666553222 3468999999999988887654
No 445
>PRK08322 acetolactate synthase; Reviewed
Probab=25.95 E-value=2.7e+02 Score=29.90 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=22.1
Q ss_pred cceEEeccC------chhHHHHHHcCCcEEecc
Q 010617 386 IACFLSHCG------WNSTMEGVSNGIPFLCWP 412 (506)
Q Consensus 386 v~~~ItHgG------~~sv~eal~~GvP~v~~P 412 (506)
..++++|.| .+.+.+|...++|+|++-
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 445888887 458899999999999984
No 446
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=25.80 E-value=2.7e+02 Score=30.17 Aligned_cols=27 Identities=11% Similarity=0.234 Sum_probs=22.3
Q ss_pred cceEEeccC------chhHHHHHHcCCcEEecc
Q 010617 386 IACFLSHCG------WNSTMEGVSNGIPFLCWP 412 (506)
Q Consensus 386 v~~~ItHgG------~~sv~eal~~GvP~v~~P 412 (506)
.+++++|.| .+.+++|...++|+|++-
T Consensus 67 ~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~ 99 (563)
T PRK08527 67 VGVAIVTSGPGFTNAVTGLATAYMDSIPLVLIS 99 (563)
T ss_pred CEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 445898888 458899999999999984
No 447
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.75 E-value=3.6e+02 Score=24.70 Aligned_cols=32 Identities=22% Similarity=0.106 Sum_probs=22.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 40 (506)
+||+ + ++.|++ -..|++.|+++||+|++++..
T Consensus 8 ~vlI-t-Gasg~i--G~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 8 VALV-T-GAARGL--GRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred EEEE-e-CCCchH--HHHHHHHHHHCCCeEEEEeCC
Confidence 4444 3 455654 467899999999998776554
No 448
>PRK13057 putative lipid kinase; Reviewed
Probab=25.73 E-value=1.4e+02 Score=29.09 Aligned_cols=66 Identities=12% Similarity=0.124 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEeccchhhhhcCCCcceEEeccCchhHHHHH--
Q 010617 325 VQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEGV-- 402 (506)
Q Consensus 325 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~vpq~~lL~h~~v~~~ItHgG~~sv~eal-- 402 (506)
.....+.+.++..+..+....... +... ..++-+ +....+ .+|--||-||+.|++
T Consensus 13 ~~~~~i~~~l~~~g~~~~~~~t~~---------~~~a----------~~~~~~--~~~~~d--~iiv~GGDGTv~~v~~~ 69 (287)
T PRK13057 13 AALAAARAALEAAGLELVEPPAED---------PDDL----------SEVIEA--YADGVD--LVIVGGGDGTLNAAAPA 69 (287)
T ss_pred hhHHHHHHHHHHcCCeEEEEecCC---------HHHH----------HHHHHH--HHcCCC--EEEEECchHHHHHHHHH
Confidence 345677788888887765544332 1110 011111 233334 499999999999985
Q ss_pred --HcCCcEEeccC
Q 010617 403 --SNGIPFLCWPY 413 (506)
Q Consensus 403 --~~GvP~v~~P~ 413 (506)
..++|+-++|.
T Consensus 70 l~~~~~~lgiiP~ 82 (287)
T PRK13057 70 LVETGLPLGILPL 82 (287)
T ss_pred HhcCCCcEEEECC
Confidence 34789999995
No 449
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=25.60 E-value=68 Score=27.46 Aligned_cols=35 Identities=23% Similarity=0.158 Sum_probs=27.2
Q ss_pred cCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHh
Q 010617 15 GHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (506)
Q Consensus 15 GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 49 (506)
-.+--.+-++..|.++||+|++++++...+.++-+
T Consensus 11 vq~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~va 45 (139)
T PF09001_consen 11 VQTPSALYLSYKLKKKGFEVVVAGNPAALKLLEVA 45 (139)
T ss_dssp THHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhcCCeEEEecCHHHHhHhhhc
Confidence 34455677899999999999999998888777654
No 450
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=25.59 E-value=1e+02 Score=30.01 Aligned_cols=31 Identities=32% Similarity=0.420 Sum_probs=24.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 39 (506)
|||+++-.|..| ..+|..|++.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 467777655555 5678889999999999987
No 451
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=25.45 E-value=1.7e+02 Score=28.12 Aligned_cols=113 Identities=13% Similarity=0.004 Sum_probs=52.2
Q ss_pred EcCCCccCHHHHHHHH-HHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHHHHHH
Q 010617 9 MPAPAQGHVIPLLEFS-QCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQ 87 (506)
Q Consensus 9 ~~~~~~GH~~p~l~La-~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (506)
+++.+.-+=.-+..+| ++|=.+=.-||+.++-.....++.+-..+.. -|++..-++-.....+...+..+.+..+.+
T Consensus 22 vAfSGGvDSslLa~la~~~lG~~v~AvTv~sP~~p~~e~e~A~~~A~~--iGi~H~~i~~~~~~~~~~~n~~~rCY~CK~ 99 (269)
T COG1606 22 VAFSGGVDSSLLAKLAKEALGDNVVAVTVDSPYIPRREIEEAKNIAKE--IGIRHEFIKMNRMDPEFKENPENRCYLCKR 99 (269)
T ss_pred EEecCCccHHHHHHHHHHHhccceEEEEEecCCCChhhhhHHHHHHHH--hCCcceeeehhhcchhhccCCCCcchHHHH
Confidence 3333333444455555 3442333455666543333233322211111 245444443211112223333344545544
Q ss_pred hCcHHHHHHHHHHhcCCCCCccEEEe-----cCCcc-hHHHHHHHcCC
Q 010617 88 VMPGKLEELIEEINSREDEKIDCFIA-----DGNIG-WSMEIAKKMNV 129 (506)
Q Consensus 88 ~~~~~~~~ll~~l~~~~~~~~DlvV~-----D~~~~-~~~~~A~~lgI 129 (506)
.....+.+..+. ..+|+|+- |.+.. .+..+.+.+||
T Consensus 100 ~v~~~l~~~a~~------~Gyd~V~dGtNasDl~~~RPG~rA~kE~gi 141 (269)
T COG1606 100 AVYSTLVEEAEK------RGYDVVADGTNASDLFDYRPGLRALKELGI 141 (269)
T ss_pred HHHHHHHHHHHH------cCCCEEEeCCcHHHhcCCCcchhhHHhcCC
Confidence 444445555554 78999983 33333 58888888875
No 452
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=25.41 E-value=3.6e+02 Score=25.26 Aligned_cols=33 Identities=18% Similarity=0.091 Sum_probs=23.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 39 (506)
-|+++++.+ .|. =-.++|++|+++|++|+++..
T Consensus 8 ~k~~lItGa-s~g--IG~aia~~l~~~G~~vv~~~~ 40 (251)
T PRK12481 8 GKVAIITGC-NTG--LGQGMAIGLAKAGADIVGVGV 40 (251)
T ss_pred CCEEEEeCC-Cch--HHHHHHHHHHHCCCEEEEecC
Confidence 356667644 333 457889999999999988754
No 453
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=25.39 E-value=2.3e+02 Score=30.80 Aligned_cols=27 Identities=7% Similarity=0.318 Sum_probs=22.0
Q ss_pred cceEEeccCch------hHHHHHHcCCcEEecc
Q 010617 386 IACFLSHCGWN------STMEGVSNGIPFLCWP 412 (506)
Q Consensus 386 v~~~ItHgG~~------sv~eal~~GvP~v~~P 412 (506)
..++++|.|-| .+.+|...++|+|++-
T Consensus 79 ~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 79 PGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 34488998854 6889999999999984
No 454
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=25.32 E-value=5.1e+02 Score=23.86 Aligned_cols=47 Identities=11% Similarity=-0.099 Sum_probs=33.1
Q ss_pred cchhhhhhhcC--CCCceEEEEeCccccCCHHHHHHHHHHHhhC-CCCEEEE
Q 010617 296 DSNCLKWLDQQ--QPSSVVYVSFGSFTILDQVQFQELALGLELC-KRPFLWV 344 (506)
Q Consensus 296 ~~~l~~~l~~~--~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~ 344 (506)
.+.+.+++... ....++||...|. ...+....+.++++.. +..+...
T Consensus 17 ~~~l~~~l~~~~~~~~~i~~IptAs~--~~~~~~~~~~~a~~~l~G~~~~~~ 66 (212)
T cd03146 17 LPAIDDLLLSLTKARPKVLFVPTASG--DRDEYTARFYAAFESLRGVEVSHL 66 (212)
T ss_pred hHHHHHHHHHhccCCCeEEEECCCCC--CHHHHHHHHHHHHhhccCcEEEEE
Confidence 44456666655 3456899987765 4567788899999999 8876543
No 455
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=25.19 E-value=90 Score=33.82 Aligned_cols=38 Identities=13% Similarity=-0.018 Sum_probs=27.2
Q ss_pred cEEEecCCcc---hHHHHHHHcCCceEEEccchHHHHHHHh
Q 010617 109 DCFIADGNIG---WSMEIAKKMNVRGAVFWPSSAASVALVF 146 (506)
Q Consensus 109 DlvV~D~~~~---~~~~~A~~lgIP~v~~~~~~~~~~~~~~ 146 (506)
.-||+=++.+ .++...++..+++.+++++.++.+..+.
T Consensus 143 ~~ViaHfHEWmaG~gll~lr~~~~~VaTvFTTHAT~lGR~l 183 (633)
T PF05693_consen 143 PKVIAHFHEWMAGVGLLYLRKRKPDVATVFTTHATLLGRYL 183 (633)
T ss_dssp EEEEEEEESGGGTTHHHHHHHTT-SCEEEEEESS-HHHHHH
T ss_pred CcEEEEechHhHhHHHHHHhccCCCeeEEEEecccchhhHh
Confidence 4555554444 5888889999999999999999887554
No 456
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=24.86 E-value=1.1e+02 Score=31.73 Aligned_cols=39 Identities=26% Similarity=0.370 Sum_probs=30.6
Q ss_pred CCEEEEEc--CCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010617 3 RPRVLVMP--APAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (506)
Q Consensus 3 ~~~il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 41 (506)
+++|+.+. =|+-|-..-.+.||..|+.+|++|.++=.+.
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDp 160 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDP 160 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCC
Confidence 45666444 3666999999999999999999999885543
No 457
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=24.72 E-value=3.3e+02 Score=27.12 Aligned_cols=99 Identities=18% Similarity=0.315 Sum_probs=58.6
Q ss_pred CEEEEEcCCCc-c----CHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCH
Q 010617 4 PRVLVMPAPAQ-G----HVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDL 78 (506)
Q Consensus 4 ~~il~~~~~~~-G----H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 78 (506)
..|+|.|..+. . -..-+..|++.|.++|..|.++.++...+..++... .+..... +. ...+
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~-------~~~~~~~---l~---~k~s- 241 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAK-------GLPNAVI---LA---GKTS- 241 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHH-------hcCCccc---cC---CCCC-
Confidence 46777776222 2 234678999999999999999988744444433321 1100000 10 1111
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccc
Q 010617 79 GKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPS 137 (506)
Q Consensus 79 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~ 137 (506)
+.++..-+. .-|++|+.- ..-..+|..+|+|+|.++..
T Consensus 242 --------------L~e~~~li~-----~a~l~I~~D--Sg~~HlAaA~~~P~I~iyg~ 279 (334)
T COG0859 242 --------------LEELAALIA-----GADLVIGND--SGPMHLAAALGTPTIALYGP 279 (334)
T ss_pred --------------HHHHHHHHh-----cCCEEEccC--ChHHHHHHHcCCCEEEEECC
Confidence 333333332 358888653 67788999999999997643
No 458
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=24.69 E-value=77 Score=32.81 Aligned_cols=32 Identities=19% Similarity=0.356 Sum_probs=25.6
Q ss_pred EEE-EcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 010617 6 VLV-MPAPAQGHVIPLLEFSQCLAKHGFRVTFV 37 (506)
Q Consensus 6 il~-~~~~~~GH~~p~l~La~~L~~rGh~Vt~~ 37 (506)
|++ -+..+.|-..-.+.|.++|.+||+.|-=+
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 443 34456699999999999999999999755
No 459
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=24.67 E-value=5.3e+02 Score=23.38 Aligned_cols=113 Identities=6% Similarity=0.057 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHh-CCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCC----------------CCCCC-CCccCH
Q 010617 17 VIPLLEFSQCLAK-HGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPD----------------GMEPW-EDRNDL 78 (506)
Q Consensus 17 ~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~----------------~~~~~-~~~~~~ 78 (506)
+.-...+++.+.+ .|.++.+..+....+.++.+ ++-+..+.. ++... .+...+
T Consensus 41 L~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gA---------DfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~ 111 (183)
T PF02056_consen 41 LEIVERLARRMVEEAGADLKVEATTDRREALEGA---------DFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGP 111 (183)
T ss_dssp HHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTE---------SEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCC---------CEEEEEeeecchHHHHHHHHHHHHhCCccccccccCc
Confidence 3455566776665 56777777666666666543 454444431 11110 233445
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcch---HHHHHHHcC-CceEEEccchHHHHH
Q 010617 79 GKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGW---SMEIAKKMN-VRGAVFWPSSAASVA 143 (506)
Q Consensus 79 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~---~~~~A~~lg-IP~v~~~~~~~~~~~ 143 (506)
..++..+. .-+.+.++.+.++. .-||.-+.++.-+. ...+.+..+ ++.+.++.++.....
T Consensus 112 GG~~~alR--tipv~~~ia~~i~~---~~PdAw~iNytNP~~~vt~a~~r~~~~~k~vGlCh~~~~~~~ 175 (183)
T PF02056_consen 112 GGFFRALR--TIPVMLDIARDIEE---LCPDAWLINYTNPMGIVTEALSRYTPKIKVVGLCHGPQGTRR 175 (183)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHH---HTTTSEEEE-SSSHHHHHHHHHHHSTTSEEEEE-SHHHHHHH
T ss_pred cHHHHHHh--hHHHHHHHHHHHHH---hCCCcEEEeccChHHHHHHHHHHhCCCCCEEEECCCHHHHHH
Confidence 55554442 23445566666665 56899999977664 344555666 999999998776544
No 460
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.64 E-value=2.2e+02 Score=27.33 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=35.7
Q ss_pred cceEEeccCchhHHHHHH-cCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCC
Q 010617 386 IACFLSHCGWNSTMEGVS-NGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGN 457 (506)
Q Consensus 386 v~~~ItHgG~~sv~eal~-~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d 457 (506)
++++|+=||-||+..|+. .++|++.+-.. .+|... .++.+++.+++.+++..
T Consensus 42 ~d~vi~iGGDGT~L~a~~~~~~Pilgin~G--------------~lGfl~------~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 42 ADLIIVVGGDGTVLKAAKKVGTPLVGFKAG--------------RLGFLS------SYTLEEIDRFLEDLKNW 94 (256)
T ss_pred CCEEEEECCcHHHHHHHHHcCCCEEEEeCC--------------CCcccc------ccCHHHHHHHHHHHHcC
Confidence 455999999999999977 46776654311 133333 24678888888888864
No 461
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.57 E-value=1.7e+02 Score=28.29 Aligned_cols=53 Identities=8% Similarity=0.122 Sum_probs=36.2
Q ss_pred ceEEeccCchhHHHHHHc-----CCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhCCh
Q 010617 387 ACFLSHCGWNSTMEGVSN-----GIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 458 (506)
Q Consensus 387 ~~~ItHgG~~sv~eal~~-----GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~d~ 458 (506)
+++|+=||-||+..|+.. .+|++.+-..+ .+|.. ..++.+++.+++.+++.++
T Consensus 41 D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G-------------~lGFL------~~~~~~~~~~~l~~i~~g~ 98 (264)
T PRK03501 41 NIIVSIGGDGTFLQAVRKTGFREDCLYAGISTKD-------------QLGFY------CDFHIDDLDKMIQAITKEE 98 (264)
T ss_pred cEEEEECCcHHHHHHHHHhcccCCCeEEeEecCC-------------CCeEc------ccCCHHHHHHHHHHHHcCC
Confidence 449999999999999874 56665443211 13333 2356789999999998654
No 462
>PTZ00445 p36-lilke protein; Provisional
Probab=24.46 E-value=5.5e+02 Score=24.02 Aligned_cols=111 Identities=14% Similarity=0.133 Sum_probs=58.7
Q ss_pred cCHHH-HHHHHHHHHhCCCeEEEEeCCcchh--------------HHHHhhhcCCCCCCCeEE--EecCCCCCCC-CCcc
Q 010617 15 GHVIP-LLEFSQCLAKHGFRVTFVNTDYNHK--------------RVVESLQGKNYLGEQIHL--VSIPDGMEPW-EDRN 76 (506)
Q Consensus 15 GH~~p-~l~La~~L~~rGh~Vt~~~~~~~~~--------------~v~~~~~~~~~~~~~i~~--~~~~~~~~~~-~~~~ 76 (506)
+|+.| +..+.++|.++|..|+++|...... .++..+... ++.+ ..+-..+|.. ....
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s-----~~~~~i~~~~~yyp~~w~~p~ 148 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKS-----KCDFKIKKVYAYYPKFWQEPS 148 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhc-----CccceeeeeeeeCCcccCChh
Confidence 45566 7889999999999999998865433 333322110 1111 1111111211 1111
Q ss_pred CHHHHHHHHHHh-CcHH----HHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccc
Q 010617 77 DLGKLIEKCLQV-MPGK----LEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPS 137 (506)
Q Consensus 77 ~~~~~~~~~~~~-~~~~----~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~ 137 (506)
+. ...-... .... ++.++++..- ..-++++.|-. ..-...|+.+|+-.+.+...
T Consensus 149 ~y---~~~gl~KPdp~iK~yHle~ll~~~gl---~peE~LFIDD~-~~NVeaA~~lGi~ai~f~~~ 207 (219)
T PTZ00445 149 DY---RPLGLDAPMPLDKSYHLKQVCSDFNV---NPDEILFIDDD-MNNCKNALKEGYIALHVTGN 207 (219)
T ss_pred hh---hhhcccCCCccchHHHHHHHHHHcCC---CHHHeEeecCC-HHHHHHHHHCCCEEEEcCCh
Confidence 11 0000000 0111 2555555332 34478889964 67888999999999987643
No 463
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=24.45 E-value=4.6e+02 Score=22.60 Aligned_cols=99 Identities=17% Similarity=0.161 Sum_probs=60.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHH
Q 010617 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGK 80 (506)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 80 (506)
+++|++.. ..++=.-++.+++.|.+. ||.+ +.++...+.+++. .|+....+-.+ +.+
T Consensus 4 ~~~v~lsv--~d~dK~~l~~~a~~l~~ll~Gf~l--~AT~gTa~~L~~~--------~Gi~v~~vi~~-~~g-------- 62 (142)
T PRK05234 4 RKRIALIA--HDHKKDDLVAWVKAHKDLLEQHEL--YATGTTGGLIQEA--------TGLDVTRLLSG-PLG-------- 62 (142)
T ss_pred CcEEEEEE--eccchHHHHHHHHHHHHHhcCCEE--EEeChHHHHHHhc--------cCCeeEEEEcC-CCC--------
Confidence 45566555 446667888999999999 9995 4566777777765 14544443111 000
Q ss_pred HHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEe--cCCcc--------hHHHHHHHcCCceEEEcc
Q 010617 81 LIEKCLQVMPGKLEELIEEINSREDEKIDCFIA--DGNIG--------WSMEIAKKMNVRGAVFWP 136 (506)
Q Consensus 81 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~--D~~~~--------~~~~~A~~lgIP~v~~~~ 136 (506)
..+.+.+++.. .++|+||. |.... .-...|-..|||+++-..
T Consensus 63 --------g~~~i~~~I~~------g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~l~ 114 (142)
T PRK05234 63 --------GDQQIGALIAE------GKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATNRA 114 (142)
T ss_pred --------CchhHHHHHHc------CceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcCHH
Confidence 01223444554 78999997 42322 344568888999999433
No 464
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=24.37 E-value=1.2e+02 Score=32.07 Aligned_cols=46 Identities=20% Similarity=0.143 Sum_probs=35.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHh
Q 010617 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (506)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 49 (506)
..||++.-.++ --.+=...|.+.|.++|++|.++.++...+.+...
T Consensus 70 ~k~IllgVtGs-IAayka~~lvr~L~k~G~~V~VvmT~sA~~fv~p~ 115 (475)
T PRK13982 70 SKRVTLIIGGG-IAAYKALDLIRRLKERGAHVRCVLTKAAQQFVTPL 115 (475)
T ss_pred CCEEEEEEccH-HHHHHHHHHHHHHHhCcCEEEEEECcCHHHHhhHH
Confidence 45677655443 34568889999999999999999998877777643
No 465
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=24.33 E-value=6.3e+02 Score=24.16 Aligned_cols=138 Identities=17% Similarity=0.115 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCC---CCC---hhhHHhhcCCeEEEeccchhhhhcC-----CC-cceEEe
Q 010617 324 QVQFQELALGLELCKRPFLWVVRPDITTDAND---RYP---EGFQERVAARGQMISWAPQLRVLNH-----PS-IACFLS 391 (506)
Q Consensus 324 ~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~---~lp---~~~~~~~~~n~~v~~~vpq~~lL~h-----~~-v~~~It 391 (506)
...+..+++.++..+.+||+.+..-....... .|. ++-.+..|+|+.+..--...-+++- .+ ...-||
T Consensus 91 L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih 170 (249)
T PF05673_consen 91 LGDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIH 170 (249)
T ss_pred hccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccC
Confidence 34477788888889999998886432211110 011 1112244788887644333333311 00 000122
Q ss_pred ccCchhHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHHHHHHHHHhC------C-hHHHHHH
Q 010617 392 HCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLG------N-QDFKARA 464 (506)
Q Consensus 392 HgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l~~ai~~vl~------d-~~~r~~a 464 (506)
.+ =++.|.|. +.++ .|+++.. ..++.++-.+.|+.... + +..+++|
T Consensus 171 ~~--d~~eEklS--------------------LsDR--FGL~l~F---~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~A 223 (249)
T PF05673_consen 171 PS--DTIEEKLS--------------------LSDR--FGLWLSF---YPPDQEEYLAIVRHYAERYGLELDEEELRQEA 223 (249)
T ss_pred cc--hHHHHHHh--------------------HHHh--CCcEEEe---cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 21 13333333 3443 5666665 55788887777777662 2 4566666
Q ss_pred HHHHHHHHhhhhcCCChHHHHHHHHHHHHh
Q 010617 465 LELKEKAMSSVREGGSSYKTFQNFLQWVKT 494 (506)
Q Consensus 465 ~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~ 494 (506)
.+.+. ..||.|-+...+|++++..
T Consensus 224 l~wa~------~rg~RSGRtA~QF~~~l~g 247 (249)
T PF05673_consen 224 LQWAL------RRGGRSGRTARQFIDDLAG 247 (249)
T ss_pred HHHHH------HcCCCCHHHHHHHHHHHhc
Confidence 66543 3488899999999998864
No 466
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=24.33 E-value=3.5e+02 Score=25.96 Aligned_cols=91 Identities=16% Similarity=0.181 Sum_probs=51.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHH
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIE 83 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 83 (506)
++|+++- ++++ ...|++.|...++.+++.+....-....... .. ..... .-
T Consensus 3 ~~ilvlG--GT~D---ar~la~~L~~~~~~~~~ss~t~~g~~l~~~~-------~~---~~~~G-------~l------- 53 (257)
T COG2099 3 MRILLLG--GTSD---ARALAKKLAAAPVDIILSSLTGYGAKLAEQI-------GP---VRVGG-------FL------- 53 (257)
T ss_pred ceEEEEe--ccHH---HHHHHHHhhccCccEEEEEcccccccchhcc-------CC---eeecC-------cC-------
Confidence 4555554 3333 4789999999997777776644333222210 01 11110 00
Q ss_pred HHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcch-------HHHHHHHcCCceEEEc
Q 010617 84 KCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGW-------SMEIAKKMNVRGAVFW 135 (506)
Q Consensus 84 ~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~-------~~~~A~~lgIP~v~~~ 135 (506)
-.+.+.+++++ .+.|+|| |..-+. +..+|+..|||++.+-
T Consensus 54 -----~~e~l~~~l~e------~~i~llI-DATHPyAa~iS~Na~~aake~gipy~r~e 100 (257)
T COG2099 54 -----GAEGLAAFLRE------EGIDLLI-DATHPYAARISQNAARAAKETGIPYLRLE 100 (257)
T ss_pred -----CHHHHHHHHHH------cCCCEEE-ECCChHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 11224555666 7888776 544443 5578999999999963
No 467
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=24.30 E-value=3.1e+02 Score=26.92 Aligned_cols=87 Identities=10% Similarity=-0.011 Sum_probs=48.5
Q ss_pred chhhhhhhcCCCCceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEeccc
Q 010617 297 SNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAP 376 (506)
Q Consensus 297 ~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~vp 376 (506)
.|+.....+.+-+++-+-........+...+..+.+++++.|..+++.++....... +... ...++.=
T Consensus 116 ~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~---~~~~---------~~~p~~~ 183 (293)
T COG2159 116 EELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGGAG---LEKG---------HSDPLYL 183 (293)
T ss_pred HHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCCcc---cccC---------CCCchHH
Confidence 345555555432333332333223445556888999999999999997765421100 0000 0011112
Q ss_pred hhhhhcCCCcceEEeccCc
Q 010617 377 QLRVLNHPSIACFLSHCGW 395 (506)
Q Consensus 377 q~~lL~h~~v~~~ItHgG~ 395 (506)
..-...+|+++.++.|+|.
T Consensus 184 ~~va~~fP~l~IVl~H~G~ 202 (293)
T COG2159 184 DDVARKFPELKIVLGHMGE 202 (293)
T ss_pred HHHHHHCCCCcEEEEecCC
Confidence 2334467899999999994
No 468
>PRK11269 glyoxylate carboligase; Provisional
Probab=24.26 E-value=3.5e+02 Score=29.50 Aligned_cols=27 Identities=22% Similarity=0.503 Sum_probs=21.7
Q ss_pred cceEEeccC------chhHHHHHHcCCcEEecc
Q 010617 386 IACFLSHCG------WNSTMEGVSNGIPFLCWP 412 (506)
Q Consensus 386 v~~~ItHgG------~~sv~eal~~GvP~v~~P 412 (506)
+.+++.|.| .+.+++|.+.++|+|++.
T Consensus 69 ~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 101 (591)
T PRK11269 69 IGVCIGTSGPAGTDMITGLYSASADSIPILCIT 101 (591)
T ss_pred cEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 444666666 679999999999999984
No 469
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=24.21 E-value=2.9e+02 Score=28.69 Aligned_cols=26 Identities=15% Similarity=0.374 Sum_probs=21.5
Q ss_pred cceEEeccCc------hhHHHHHHcCCcEEec
Q 010617 386 IACFLSHCGW------NSTMEGVSNGIPFLCW 411 (506)
Q Consensus 386 v~~~ItHgG~------~sv~eal~~GvP~v~~ 411 (506)
.+++++|.|- +.+.+|.+.++|+|++
T Consensus 64 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 64 PVAVVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CEEEEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 3448888884 4788999999999998
No 470
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=23.88 E-value=1.6e+02 Score=22.19 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=28.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 010617 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (506)
Q Consensus 6 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 38 (506)
+++...++.|-..-...++..|++.|++|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 456666677999999999999999999998876
No 471
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=23.86 E-value=40 Score=30.25 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=23.4
Q ss_pred cCCCcceEEeccCchhHHHHHHcCCcEEeccCcc
Q 010617 382 NHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFG 415 (506)
Q Consensus 382 ~h~~v~~~ItHgG~~sv~eal~~GvP~v~~P~~~ 415 (506)
.+..++.+|+.||...+..... ++|+|-+|..+
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 5566777999999999999888 99999999864
No 472
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=23.70 E-value=5.7e+02 Score=26.75 Aligned_cols=26 Identities=19% Similarity=0.040 Sum_probs=21.9
Q ss_pred CCccEEEecCCcchHHHHHHHcCCceEEE
Q 010617 106 EKIDCFIADGNIGWSMEIAKKMNVRGAVF 134 (506)
Q Consensus 106 ~~~DlvV~D~~~~~~~~~A~~lgIP~v~~ 134 (506)
.+||++|... .+..+|+++|||++.+
T Consensus 386 ~~pdllig~s---~~~~~A~~lgip~~~~ 411 (443)
T TIGR01862 386 LKPDIIFSGI---KEKFVAQKLGVPYRQM 411 (443)
T ss_pred cCCCEEEEcC---cchhhhhhcCCCeEec
Confidence 7899999874 4577999999999975
No 473
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=23.67 E-value=2.5e+02 Score=28.35 Aligned_cols=82 Identities=18% Similarity=0.237 Sum_probs=53.0
Q ss_pred eccchhhhh-cCCCcceEEecc---Cch-hHHHHHHcCCcEEeccCcccchhhHHhhhccceeeeEeecCCCCCcCHHHH
Q 010617 373 SWAPQLRVL-NHPSIACFLSHC---GWN-STMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEI 447 (506)
Q Consensus 373 ~~vpq~~lL-~h~~v~~~ItHg---G~~-sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~G~~l~~~~~~~~~~~~l 447 (506)
+-.+--+.| .|.++ +|||= |.| ...|+||.|-|+| .|+..+. ++|-.- ..++..+=
T Consensus 259 gR~~~p~fla~~tD~--VvSHqWeN~lNYlY~daLyggYPLV---------HNS~~l~---d~GYYY-----~~fD~~~G 319 (364)
T PF10933_consen 259 GRFDFPDFLAQHTDA--VVSHQWENPLNYLYYDALYGGYPLV---------HNSPLLK---DVGYYY-----PDFDAFEG 319 (364)
T ss_pred eecChHHHHHhCCCE--EEeccccchhhHHHHHHHhcCCCcc---------cCcchhc---ccCcCC-----CCccHHHH
Confidence 333333434 36666 99994 333 5689999999998 4777765 366555 34566665
Q ss_pred HHHHHHHhC--C---hHHHHHHHHHHHHHHh
Q 010617 448 KNKVDQVLG--N---QDFKARALELKEKAMS 473 (506)
Q Consensus 448 ~~ai~~vl~--d---~~~r~~a~~l~~~~~~ 473 (506)
.+++.+++. | +.|+++|+++=..+.-
T Consensus 320 ~r~L~~A~~~HD~~~~~Y~~ra~~~l~~~~p 350 (364)
T PF10933_consen 320 ARQLLRAIREHDADLDAYRARARRLLDRLSP 350 (364)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHhhCC
Confidence 556655553 2 2799999888776643
No 474
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=23.39 E-value=3.8e+02 Score=24.29 Aligned_cols=31 Identities=13% Similarity=0.266 Sum_probs=23.5
Q ss_pred CccEEEecCCcchHHHHHHHcCCceEEEccch
Q 010617 107 KIDCFIADGNIGWSMEIAKKMNVRGAVFWPSS 138 (506)
Q Consensus 107 ~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~~ 138 (506)
+-+++++|- .......|+..|+.++.+....
T Consensus 169 ~~~~l~i~D-~~~di~aA~~aG~~~i~v~~~~ 199 (211)
T TIGR02247 169 PEECVFLDD-LGSNLKPAAALGITTIKVSDEE 199 (211)
T ss_pred HHHeEEEcC-CHHHHHHHHHcCCEEEEECCHH
Confidence 346777774 4678899999999999876543
No 475
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=23.37 E-value=1.5e+02 Score=26.44 Aligned_cols=35 Identities=31% Similarity=0.400 Sum_probs=24.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 010617 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (506)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 38 (506)
..+|++++.++- .=-=-+.+|+.|+++|++|+++.
T Consensus 25 ~~~v~il~G~Gn-NGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 25 GPRVLILCGPGN-NGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp T-EEEEEE-SSH-HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCeEEEEECCCC-ChHHHHHHHHHHHHCCCeEEEEE
Confidence 457888885542 23346788999999999999943
No 476
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=23.35 E-value=6e+02 Score=25.17 Aligned_cols=104 Identities=13% Similarity=0.209 Sum_probs=54.1
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhhHHhhcCCeEEEeccchhhhhcCCCcce
Q 010617 309 SSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIAC 388 (506)
Q Consensus 309 ~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n~~v~~~vpq~~lL~h~~v~~ 388 (506)
+.+.++.+|++. +.+++-+...|.+++..-... ...+ ++. .........++++.+++
T Consensus 137 ~tvgIvG~G~IG-------~~vA~~l~afG~~V~~~~~~~------~~~~-~~~-------~~~~~~~l~e~l~~aDv-- 193 (312)
T PRK15469 137 FTIGILGAGVLG-------SKVAQSLQTWGFPLRCWSRSR------KSWP-GVQ-------SFAGREELSAFLSQTRV-- 193 (312)
T ss_pred CEEEEECCCHHH-------HHHHHHHHHCCCEEEEEeCCC------CCCC-Cce-------eecccccHHHHHhcCCE--
Confidence 568899999765 445555566788765332111 0001 100 01223345678877777
Q ss_pred EEeccCchhHHHHHHcCCcEEeccCcccchhhHHhhhcccee-eeEeecCCCCCcCHHHHHHHHH
Q 010617 389 FLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKV-GLKFDRDEGGIITREEIKNKVD 452 (506)
Q Consensus 389 ~ItHgG~~sv~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~-G~~l~~~~~~~~~~~~l~~ai~ 452 (506)
++.|.-.+.-.+.+. |+..+.. ++= ++.++..+...++.++|.++++
T Consensus 194 vv~~lPlt~~T~~li----------------~~~~l~~-mk~ga~lIN~aRG~vVde~aL~~aL~ 241 (312)
T PRK15469 194 LINLLPNTPETVGII----------------NQQLLEQ-LPDGAYLLNLARGVHVVEDDLLAALD 241 (312)
T ss_pred EEECCCCCHHHHHHh----------------HHHHHhc-CCCCcEEEECCCccccCHHHHHHHHh
Confidence 888876655444332 3333333 232 2444544445555566655554
No 477
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=23.31 E-value=3.4e+02 Score=25.27 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHhcCCCCCccEEEecCCcc---hHHHHHHHcCCceEE
Q 010617 90 PGKLEELIEEINSREDEKIDCFIADGNIG---WSMEIAKKMNVRGAV 133 (506)
Q Consensus 90 ~~~~~~ll~~l~~~~~~~~DlvV~D~~~~---~~~~~A~~lgIP~v~ 133 (506)
...++.+++.++. -.+.+.|..+. .+..+|..+|+|++.
T Consensus 105 ~~~m~~vl~~l~~-----~gl~FvDS~T~~~s~a~~~A~~~gvp~~~ 146 (213)
T PF04748_consen 105 REAMRWVLEVLKE-----RGLFFVDSRTTPRSVAPQVAKELGVPAAR 146 (213)
T ss_dssp HHHHHHHHHHHHH-----TT-EEEE-S--TT-SHHHHHHHCT--EEE
T ss_pred HHHHHHHHHHHHH-----cCCEEEeCCCCcccHHHHHHHHcCCCEEe
Confidence 4456677777765 27899988765 589999999999998
No 478
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=23.30 E-value=5.3e+02 Score=24.05 Aligned_cols=34 Identities=18% Similarity=0.038 Sum_probs=23.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 41 (506)
+.++++.+ .| .=-.++|++|+++|++|..+....
T Consensus 11 k~~lItG~-~~--gIG~a~a~~l~~~G~~vv~~~~~~ 44 (253)
T PRK08993 11 KVAVVTGC-DT--GLGQGMALGLAEAGCDIVGINIVE 44 (253)
T ss_pred CEEEEECC-Cc--hHHHHHHHHHHHCCCEEEEecCcc
Confidence 55666643 33 334678999999999998775443
No 479
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=23.27 E-value=1.4e+02 Score=20.13 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHhCC-hHHHHHHHH
Q 010617 443 TREEIKNKVDQVLGN-QDFKARALE 466 (506)
Q Consensus 443 ~~~~l~~ai~~vl~d-~~~r~~a~~ 466 (506)
+.++|.+||..+..+ -++++.|+.
T Consensus 1 tee~l~~Ai~~v~~g~~S~r~AA~~ 25 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKMSIRKAAKK 25 (45)
T ss_dssp -HHHHHHHHHHHHTTSS-HHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 468899999999876 466665554
No 480
>CHL00067 rps2 ribosomal protein S2
Probab=23.18 E-value=2.9e+02 Score=26.04 Aligned_cols=35 Identities=11% Similarity=0.131 Sum_probs=25.9
Q ss_pred CCccEEEe-cCCcc-hHHHHHHHcCCceEEEccchHH
Q 010617 106 EKIDCFIA-DGNIG-WSMEIAKKMNVRGAVFWPSSAA 140 (506)
Q Consensus 106 ~~~DlvV~-D~~~~-~~~~~A~~lgIP~v~~~~~~~~ 140 (506)
..||+||+ |...- .+..=|.++|||.+.+.-+...
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~~ 196 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRKLGIPTISILDTNCD 196 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCCC
Confidence 56888875 54433 6888899999999998765443
No 481
>PRK06835 DNA replication protein DnaC; Validated
Probab=23.10 E-value=1.1e+02 Score=30.73 Aligned_cols=44 Identities=14% Similarity=0.093 Sum_probs=34.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHH
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVV 47 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 47 (506)
..++|+-.++.|-.+=..++|++|.++|+.|.+++.......+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~ 227 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILR 227 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHH
Confidence 45667777778888888899999999999999998866555443
No 482
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=23.04 E-value=3.8e+02 Score=27.73 Aligned_cols=26 Identities=23% Similarity=0.187 Sum_probs=21.3
Q ss_pred CCccEEEecCCcchHHHHHHHcCCceEEE
Q 010617 106 EKIDCFIADGNIGWSMEIAKKMNVRGAVF 134 (506)
Q Consensus 106 ~~~DlvV~D~~~~~~~~~A~~lgIP~v~~ 134 (506)
.+||+||.... ...+|+++|||++.+
T Consensus 357 ~~pdliig~s~---~~~~a~~lgip~~~~ 382 (415)
T cd01977 357 LKPDIILTGPR---VGELVKKLHVPYVNI 382 (415)
T ss_pred cCCCEEEecCc---cchhhhhcCCCEEec
Confidence 68999998853 336899999999885
No 483
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=22.99 E-value=2.6e+02 Score=29.76 Aligned_cols=34 Identities=26% Similarity=0.469 Sum_probs=25.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcc
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYN 42 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~ 42 (506)
||||++-.++..| +|+.+|.+. |++|..+..+.+
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g~~N 36 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSSYLN 36 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEECCCC
Confidence 5899988887777 477788776 899888855333
No 484
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=22.92 E-value=24 Score=29.34 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCcchhHHHH
Q 010617 17 VIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (506)
Q Consensus 17 ~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 48 (506)
+.|++.+.-.+.-|||.++++.+..+.+.+..
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~~~~~~ 40 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYKNYVDD 40 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHhccccc
Confidence 45777888888889999999999887765543
No 485
>PRK12744 short chain dehydrogenase; Provisional
Probab=22.90 E-value=3.8e+02 Score=25.11 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=21.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 010617 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (506)
Q Consensus 5 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 38 (506)
+.++++.++.| =-..+|+.|+++|++|.++.
T Consensus 9 k~vlItGa~~g---IG~~~a~~l~~~G~~vv~i~ 39 (257)
T PRK12744 9 KVVLIAGGAKN---LGGLIARDLAAQGAKAVAIH 39 (257)
T ss_pred cEEEEECCCch---HHHHHHHHHHHCCCcEEEEe
Confidence 45556543332 34678999999999976664
No 486
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=22.88 E-value=4.2e+02 Score=28.43 Aligned_cols=34 Identities=12% Similarity=0.138 Sum_probs=29.1
Q ss_pred CCccEEE----ecCCcchHHHHHHHcCCceEEEccchH
Q 010617 106 EKIDCFI----ADGNIGWSMEIAKKMNVRGAVFWPSSA 139 (506)
Q Consensus 106 ~~~DlvV----~D~~~~~~~~~A~~lgIP~v~~~~~~~ 139 (506)
..+|.+| ||=..+..+..|-++|||.+.+.-.+.
T Consensus 88 ~~~Dg~v~l~~CDK~~PG~lMaaarlniP~i~v~gGpm 125 (535)
T TIGR00110 88 HRFDGLVCIPSCDKITPGMLMAAARLNIPSIFVTGGPM 125 (535)
T ss_pred CCcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCCc
Confidence 7889888 788888899999999999999876654
No 487
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=22.80 E-value=5.8e+02 Score=23.18 Aligned_cols=39 Identities=18% Similarity=0.379 Sum_probs=29.6
Q ss_pred CCEEE-EEc-CCCccCHHHHHHHHHHHHh-CCCeEEEEeCCc
Q 010617 3 RPRVL-VMP-APAQGHVIPLLEFSQCLAK-HGFRVTFVNTDY 41 (506)
Q Consensus 3 ~~~il-~~~-~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~ 41 (506)
+++++ |++ -++.|-..-...||.+|++ +|++|.++=.+.
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~ 75 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADL 75 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 35555 443 4566999999999999997 699999985553
No 488
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=22.76 E-value=5.3e+02 Score=23.89 Aligned_cols=92 Identities=14% Similarity=0.166 Sum_probs=52.0
Q ss_pred ccCHHHHHH---HHHHHHhCCCeEEEEeCCc-chhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHHHHHHhC
Q 010617 14 QGHVIPLLE---FSQCLAKHGFRVTFVNTDY-NHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVM 89 (506)
Q Consensus 14 ~GH~~p~l~---La~~L~~rGh~Vt~~~~~~-~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (506)
-||+.+.+. +++-|..+|++|.+++.-. .-..+...-. ....++.++.+ ..
T Consensus 36 iGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~---------------------~~g~~p~e~~~----~~ 90 (213)
T cd00672 36 IGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAR---------------------EEGLSWKEVAD----YY 90 (213)
T ss_pred cccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHH---------------------HcCCCHHHHHH----HH
Confidence 399886653 5777777999999996643 3333333210 01122333333 33
Q ss_pred cHHHHHHHHHHhcCCCCCccEEEecCCcchHHHHHHHcCCceEE
Q 010617 90 PGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAV 133 (506)
Q Consensus 90 ~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~ 133 (506)
...+.+.++.+.= ..||..+---+.-|+..+.+.+|-|+=+
T Consensus 91 ~~~f~~~~~~l~i---~~~d~~~rtWh~ec~am~~~~lg~~~di 131 (213)
T cd00672 91 TKEFFEDMKALNV---LPPDVVPRVWHIECSAMAMKYLGETFDI 131 (213)
T ss_pred HHHHHHHHHHcCC---CCCCcceeehhHHHHHHHHHHcCCCccE
Confidence 3445555565543 3446666554444888888888866533
No 489
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=22.76 E-value=1.9e+02 Score=27.95 Aligned_cols=118 Identities=19% Similarity=0.269 Sum_probs=60.8
Q ss_pred CEEE-EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCC---CC-CCCCCccCH
Q 010617 4 PRVL-VMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPD---GM-EPWEDRNDL 78 (506)
Q Consensus 4 ~~il-~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~---~~-~~~~~~~~~ 78 (506)
++++ +.-.|+-|-=.-.-.|++.|.++|++|-++.-++....--.++ .++.++...+.. .+ .+...+..+
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAl-----LGDRiRM~~~~~d~~vfIRS~atRG~l 103 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGAL-----LGDRIRMQELSRDPGVFIRSMATRGSL 103 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---S-----S--GGGCHHHHTSTTEEEEEE---SSH
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcc-----cccHHHhcCcCCCCCEEEeecCcCCCC
Confidence 4444 6667888999999999999999999999998776553322221 122333222210 00 000122233
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHhcCCCCCccEEEecCCcc--hHHHHHHHcCCceEEEccc
Q 010617 79 GKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG--WSMEIAKKMNVRGAVFWPS 137 (506)
Q Consensus 79 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~--~~~~~A~~lgIP~v~~~~~ 137 (506)
...-. ...+.+.-|.. ..+|+||++..-. .-..+++...+-++++.|.
T Consensus 104 GGls~--------~t~~~v~ll~a---aG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg 153 (266)
T PF03308_consen 104 GGLSR--------ATRDAVRLLDA---AGFDVIIIETVGVGQSEVDIADMADTVVLVLVPG 153 (266)
T ss_dssp HHHHH--------HHHHHHHHHHH---TT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESS
T ss_pred CCccH--------hHHHHHHHHHH---cCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCC
Confidence 33222 23333444444 7899999995433 3556777667666665543
No 490
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=22.62 E-value=5.6e+02 Score=28.35 Aligned_cols=31 Identities=16% Similarity=0.081 Sum_probs=20.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 39 (506)
|||+|+..+.. .+...++|++.||+|..+.+
T Consensus 1 mkivf~g~~~~-----a~~~l~~L~~~~~~i~~V~t 31 (660)
T PRK08125 1 MKAVVFAYHDI-----GCVGIEALLAAGYEIAAVFT 31 (660)
T ss_pred CeEEEECCCHH-----HHHHHHHHHHCCCcEEEEEe
Confidence 57888754433 23445888889999885543
No 491
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=22.62 E-value=1.2e+02 Score=31.56 Aligned_cols=35 Identities=23% Similarity=0.168 Sum_probs=26.6
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 010617 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (506)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 40 (506)
|+.+||.|+=.+..| +.+|..|+++||+|+.+-..
T Consensus 1 m~~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~~ 35 (415)
T PRK11064 1 MSFETISVIGLGYIG-----LPTAAAFASRQKQVIGVDIN 35 (415)
T ss_pred CCccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeCC
Confidence 777788877544433 57899999999999988653
No 492
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=22.55 E-value=1.6e+02 Score=26.17 Aligned_cols=38 Identities=18% Similarity=0.319 Sum_probs=31.4
Q ss_pred CEEE-EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 010617 4 PRVL-VMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (506)
Q Consensus 4 ~~il-~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 41 (506)
++|+ |+-+-..|-..=+-.|.+.|.+||++|..+-+..
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence 4566 6666677999999999999999999999986643
No 493
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=22.53 E-value=2.1e+02 Score=30.02 Aligned_cols=41 Identities=15% Similarity=0.345 Sum_probs=35.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHK 44 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 44 (506)
..|+|+-.++.|-..-+..||..|.++|+.|.+++.+.+..
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 34667778888999999999999999999999999887654
No 494
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=22.39 E-value=81 Score=27.97 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=21.4
Q ss_pred ceEEeccCc------hhHHHHHHcCCcEEecc
Q 010617 387 ACFLSHCGW------NSTMEGVSNGIPFLCWP 412 (506)
Q Consensus 387 ~~~ItHgG~------~sv~eal~~GvP~v~~P 412 (506)
.++++|+|- +.+.||...++|+|++.
T Consensus 62 gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 62 VAVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred EEEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 348888884 47889999999999985
No 495
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=22.37 E-value=90 Score=30.21 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=21.1
Q ss_pred HHHHHHHhCCCeEEEEeCCcchhHHHHh
Q 010617 22 EFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (506)
Q Consensus 22 ~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 49 (506)
.+|..|++.||+|+++......+.+.+.
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~~~~~i~~~ 32 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGEQLEALNQE 32 (293)
T ss_pred HHHHHHHhCCCcEEEEecHHHHHHHHHC
Confidence 4788999999999999886444455443
No 496
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=22.35 E-value=5.4e+02 Score=22.63 Aligned_cols=91 Identities=10% Similarity=0.092 Sum_probs=49.6
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcchhHHHHhhhcCCCCCCCeEEEecCCCCCCCCCccCHHHHHHHHHHhCcHHHHHHHHH
Q 010617 20 LLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELIEE 99 (506)
Q Consensus 20 ~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 99 (506)
...+-+.|.++|..+.++|.......+...... .++.+.. ....+ ....+...++.
T Consensus 48 v~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~-----~gl~~~~--~~~KP-----------------~p~~~~~~l~~ 103 (170)
T TIGR01668 48 LRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKA-----LGIPVLP--HAVKP-----------------PGCAFRRAHPE 103 (170)
T ss_pred HHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHH-----cCCEEEc--CCCCC-----------------ChHHHHHHHHH
Confidence 345678888899999999986533333222110 1333321 10000 11123333444
Q ss_pred HhcCCCCCccEEEecCCcchHHHHHHHcCCceEEEccc
Q 010617 100 INSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPS 137 (506)
Q Consensus 100 l~~~~~~~~DlvV~D~~~~~~~~~A~~lgIP~v~~~~~ 137 (506)
+.- .+-++++++-....-...|+..|+.++.+.+.
T Consensus 104 ~~~---~~~~~l~IGDs~~~Di~aA~~aGi~~i~v~~g 138 (170)
T TIGR01668 104 MGL---TSEQVAVVGDRLFTDVMGGNRNGSYTILVEPL 138 (170)
T ss_pred cCC---CHHHEEEECCcchHHHHHHHHcCCeEEEEccC
Confidence 322 23356655545446889999999999987654
No 497
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=22.25 E-value=1.7e+02 Score=30.29 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=18.8
Q ss_pred HHHHHHHHHhCCCeEEEEeCCc
Q 010617 20 LLEFSQCLAKHGFRVTFVNTDY 41 (506)
Q Consensus 20 ~l~La~~L~~rGh~Vt~~~~~~ 41 (506)
-.++|++|+++|++|+++..+.
T Consensus 217 G~aiA~~l~~~Ga~V~~v~~~~ 238 (399)
T PRK05579 217 GYALARAAARRGADVTLVSGPV 238 (399)
T ss_pred HHHHHHHHHHCCCEEEEeCCCc
Confidence 4689999999999999987643
No 498
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=22.21 E-value=4.4e+02 Score=28.64 Aligned_cols=27 Identities=11% Similarity=0.273 Sum_probs=22.3
Q ss_pred cceEEeccCc------hhHHHHHHcCCcEEecc
Q 010617 386 IACFLSHCGW------NSTMEGVSNGIPFLCWP 412 (506)
Q Consensus 386 v~~~ItHgG~------~sv~eal~~GvP~v~~P 412 (506)
.+++++|.|- +.+++|...++|+|++-
T Consensus 77 ~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 109 (585)
T CHL00099 77 VGVCFATSGPGATNLVTGIATAQMDSVPLLVIT 109 (585)
T ss_pred cEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 4458888874 48899999999999985
No 499
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=22.14 E-value=9.1e+02 Score=25.17 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=34.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 010617 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (506)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 43 (506)
..|+|+-..+-|-..-+..||..|..+|+.|.+++.+.++
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 3556776777899999999999999999999999998765
No 500
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.14 E-value=5.8e+02 Score=24.75 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCCCCccEEEecCCcc--hHHHHHHHcCCceEEEccc
Q 010617 92 KLEELIEEINSREDEKIDCFIADGNIG--WSMEIAKKMNVRGAVFWPS 137 (506)
Q Consensus 92 ~~~~ll~~l~~~~~~~~DlvV~D~~~~--~~~~~A~~lgIP~v~~~~~ 137 (506)
.+.++++.++. .+.++|+++.... .+-.+++..|++.+.+.+.
T Consensus 216 ~l~~l~~~ik~---~~v~~If~e~~~~~~~~~~ia~~~g~~v~~l~~l 260 (286)
T cd01019 216 RLAKIRKEIKE---KGATCVFAEPQFHPKIAETLAEGTGAKVGELDPL 260 (286)
T ss_pred HHHHHHHHHHH---cCCcEEEecCCCChHHHHHHHHhcCceEEEeccc
Confidence 35555666665 8999999998766 6889999999988776544
Done!