Query 010618
Match_columns 506
No_of_seqs 123 out of 133
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 02:37:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010618.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010618hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10633 NPCBM_assoc: NPCBM-as 94.8 0.17 3.8E-06 41.4 8.0 75 81-185 2-76 (78)
2 PF15418 DUF4625: Domain of un 91.0 3.9 8.4E-05 37.8 11.5 88 77-189 29-120 (132)
3 COG1470 Predicted membrane pro 89.6 6 0.00013 43.9 13.2 113 71-188 226-362 (513)
4 PF01229 Glyco_hydro_39: Glyco 89.5 1.1 2.3E-05 48.8 7.7 108 314-442 83-206 (486)
5 PF00150 Cellulase: Cellulase 80.4 14 0.00031 35.6 9.8 100 310-439 57-172 (281)
6 PF06030 DUF916: Bacterial pro 78.5 41 0.00089 30.5 11.5 108 62-186 4-120 (121)
7 PF13731 WxL: WxL domain surfa 76.6 9.1 0.0002 37.3 7.3 79 106-185 105-210 (215)
8 PF01835 A2M_N: MG2 domain; I 75.2 17 0.00036 30.6 7.6 29 157-185 58-86 (99)
9 PF10003 DUF2244: Integral mem 70.4 3.8 8.3E-05 37.8 2.8 53 159-213 88-140 (140)
10 PF14352 DUF4402: Domain of un 67.9 5.7 0.00012 35.6 3.4 32 155-186 95-128 (130)
11 COG1470 Predicted membrane pro 66.0 8.3 0.00018 42.8 4.7 33 154-186 437-469 (513)
12 PF06280 DUF1034: Fn3-like dom 61.2 8.7 0.00019 33.5 3.2 39 151-189 62-103 (112)
13 PF13204 DUF4038: Protein of u 59.6 14 0.00031 37.8 4.9 108 304-443 77-188 (289)
14 PF02221 E1_DerP2_DerF2: ML do 58.8 19 0.00042 31.5 5.0 36 153-188 86-121 (134)
15 cd00917 PG-PI_TP The phosphati 58.4 18 0.0004 32.3 4.8 33 153-186 77-109 (122)
16 KOG1579 Homocysteine S-methylt 53.9 80 0.0017 33.7 9.2 138 296-458 78-215 (317)
17 smart00633 Glyco_10 Glycosyl h 45.2 30 0.00066 34.3 4.4 97 314-440 15-126 (254)
18 smart00737 ML Domain involved 38.7 60 0.0013 28.2 4.8 34 154-187 73-106 (118)
19 PF13304 AAA_21: AAA domain; P 30.8 35 0.00075 30.5 2.1 38 403-440 259-297 (303)
20 TIGR01370 cysRS possible cyste 29.8 96 0.0021 32.8 5.4 56 380-436 143-210 (315)
21 COG2987 HutU Urocanate hydrata 27.4 34 0.00073 38.2 1.6 42 452-498 341-390 (561)
22 PF12891 Glyco_hydro_44: Glyco 25.6 1.2E+02 0.0026 31.2 5.0 25 415-439 155-179 (239)
23 PF08428 Rib: Rib/alpha-like r 25.1 2.2E+02 0.0048 23.1 5.6 31 153-186 19-49 (65)
24 PF00868 Transglut_N: Transglu 24.1 90 0.0019 28.1 3.5 31 155-185 87-117 (118)
25 PF10096 DUF2334: Uncharacteri 23.6 1.8E+02 0.0039 29.1 5.9 64 414-505 13-76 (243)
26 PF05205 COMPASS-Shg1: COMPASS 23.1 91 0.002 27.7 3.2 38 387-424 1-38 (106)
27 PF09099 Qn_am_d_aIII: Quinohe 22.5 88 0.0019 27.0 2.9 23 160-182 47-69 (81)
28 PRK05414 urocanate hydratase; 21.7 54 0.0012 37.1 1.9 39 453-496 342-388 (556)
29 PF14734 DUF4469: Domain of un 21.5 95 0.0021 27.7 3.0 23 164-186 65-87 (102)
No 1
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.84 E-value=0.17 Score=41.41 Aligned_cols=75 Identities=23% Similarity=0.344 Sum_probs=43.2
Q ss_pred ecCceEEEEEEEccCcccCCCCCCcceEEEEccccCCCCCcccccCceEEEEeeecCCCCcccccCCCCcceeeecCCCe
Q 010618 81 ARNERESVQIALRPKVSWSSSSTAGVVQVQCSDLCSASGDRLVVGQSLMLRRVVPMLGVPDALVPLDLPVCQISLIPGET 160 (506)
Q Consensus 81 aRGErvSFQlVLrs~~~~~s~~~l~~V~Vs~SDL~S~sG~~ii~g~~Itlr~V~yVlGyPD~LVP~d~p~~~v~V~agqt 160 (506)
-.||...+.+-+... ....+.+++++++ .+.| |- +..+ +.....|++|++
T Consensus 2 ~~G~~~~~~~tv~N~----g~~~~~~v~~~l~---~P~G-------------------W~---~~~~-~~~~~~l~pG~s 51 (78)
T PF10633_consen 2 TPGETVTVTLTVTNT----GTAPLTNVSLSLS---LPEG-------------------WT---VSAS-PASVPSLPPGES 51 (78)
T ss_dssp -TTEEEEEEEEEE------SSS-BSS-EEEEE-----TT-------------------SE------E-EEEE--B-TTSE
T ss_pred CCCCEEEEEEEEEEC----CCCceeeEEEEEe---CCCC-------------------cc---ccCC-ccccccCCCCCE
Confidence 358888888888753 1234556666554 2333 11 0010 112237899999
Q ss_pred eEEEEEEEcCCCCCCceeEEEEEEE
Q 010618 161 TAVWVSIDAPYAQPPGLYEGEIIIT 185 (506)
Q Consensus 161 Q~LWIdV~VP~dA~PG~Y~GtVtVt 185 (506)
+.+=++|.+|+++.||.|..+++++
T Consensus 52 ~~~~~~V~vp~~a~~G~y~v~~~a~ 76 (78)
T PF10633_consen 52 VTVTFTVTVPADAAPGTYTVTVTAR 76 (78)
T ss_dssp EEEEEEEEE-TT--SEEEEEEEEEE
T ss_pred EEEEEEEECCCCCCCceEEEEEEEE
Confidence 9999999999999999999999886
No 2
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=90.95 E-value=3.9 Score=37.85 Aligned_cols=88 Identities=19% Similarity=0.252 Sum_probs=54.2
Q ss_pred EEEeecCceEEEEEEEccCcccCCCCCCcceEEEEcc-c--cCCCCCcccccCceEEEEeeecCCCCcccccCCCCccee
Q 010618 77 NLLAARNERESVQIALRPKVSWSSSSTAGVVQVQCSD-L--CSASGDRLVVGQSLMLRRVVPMLGVPDALVPLDLPVCQI 153 (506)
Q Consensus 77 ~LsAaRGErvSFQlVLrs~~~~~s~~~l~~V~Vs~SD-L--~S~sG~~ii~g~~Itlr~V~yVlGyPD~LVP~d~p~~~v 153 (506)
.-.+-||+.+.|.+.+.. ...++.++|++-. + .+-++ ..++. -.|... .+.+
T Consensus 29 ~~~~~~G~~ihfe~~i~d------~~~i~si~VeIH~nfd~H~h~~---~~~~~---------------~~~~~~-~~~~ 83 (132)
T PF15418_consen 29 CKVATRGDDIHFEADISD------NSAIKSIKVEIHNNFDHHTHST---EAGEC---------------EKPWVF-EQDY 83 (132)
T ss_pred CeEEecCCcEEEEEEEEc------ccceeEEEEEEecCcCcccccc---ccccc---------------ccCcEE-EEEE
Confidence 456789999999999984 4568888887721 1 01010 01000 011110 0122
Q ss_pred eecCC-CeeEEEEEEEcCCCCCCceeEEEEEEEecCC
Q 010618 154 SLIPG-ETTAVWVSIDAPYAQPPGLYEGEIIITSKAD 189 (506)
Q Consensus 154 ~V~ag-qtQ~LWIdV~VP~dA~PG~Y~GtVtVt~~~~ 189 (506)
.+..| .+.-+=..|.||++++||.|.-.|+|+.+.+
T Consensus 84 ~~~~g~~~~~~h~~i~IPa~a~~G~YH~~i~VtD~~G 120 (132)
T PF15418_consen 84 DIYGGKKNYDFHEHIDIPADAPAGDYHFMITVTDAAG 120 (132)
T ss_pred cccCCcccEeEEEeeeCCCCCCCcceEEEEEEEECCC
Confidence 33332 3556678999999999999999999997555
No 3
>COG1470 Predicted membrane protein [Function unknown]
Probab=89.55 E-value=6 Score=43.87 Aligned_cols=113 Identities=20% Similarity=0.263 Sum_probs=67.7
Q ss_pred CCCCceEEEeecCceEEEEEEEccCcccCCCCCCcceEEE-------EccccCCCCCcccccCceEEEEee---------
Q 010618 71 RPLEPINLLAARNERESVQIALRPKVSWSSSSTAGVVQVQ-------CSDLCSASGDRLVVGQSLMLRRVV--------- 134 (506)
Q Consensus 71 ~~~~~i~LsAaRGErvSFQlVLrs~~~~~s~~~l~~V~Vs-------~SDL~S~sG~~ii~g~~Itlr~V~--------- 134 (506)
.+.+...+.+.+|+|+..-.++..+ ....++++++ ++.|.+.....++..+...-+.|.
T Consensus 226 t~g~y~~~i~~~g~ye~~~~av~l~-----d~~t~dLkls~~~k~~~ftEl~~s~~~~~i~~~~t~sf~V~IeN~g~~~d 300 (513)
T COG1470 226 TPGKYVVLIAKKGIYEKKKRAVKLN-----DGETKDLKLSVTEKKSYFTELNSSDIYLEISPSTTASFTVSIENRGKQDD 300 (513)
T ss_pred cCcceEEEeccccceecceEEEEcC-----CCcccceeEEEEeccceEEEeecccceeEEccCCceEEEEEEccCCCCCc
Confidence 3478889999999888877777642 1223333332 233333333211111111111111
Q ss_pred -ecC---CCCcccccC----CCCcceeeecCCCeeEEEEEEEcCCCCCCceeEEEEEEEecC
Q 010618 135 -PML---GVPDALVPL----DLPVCQISLIPGETTAVWVSIDAPYAQPPGLYEGEIIITSKA 188 (506)
Q Consensus 135 -yVl---GyPD~LVP~----d~p~~~v~V~agqtQ~LWIdV~VP~dA~PG~Y~GtVtVt~~~ 188 (506)
|-| |.|+--... +.....+.|.||+...+-+.|+.|++|.||.|..+|+++++.
T Consensus 301 ~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~na~pG~Ynv~I~A~s~s 362 (513)
T COG1470 301 EYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLNATPGTYNVTITASSSS 362 (513)
T ss_pred eeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCCCCCCceeEEEEEeccc
Confidence 111 344432222 222577899999999999999999999999999999998743
No 4
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=89.48 E-value=1.1 Score=48.83 Aligned_cols=108 Identities=20% Similarity=0.289 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhCcccCC----CcCCCCceeEEeecCCCCCCCCCccccccccccceeeeeCCCCCCChhhHHHHHHHH
Q 010618 314 YEALDQHFKWLLQYRISPF----FCRWGESMRVLTYTCPWPADHPKSDEYFSDPRLAAYAVPYSPVLSSNDGAKDYVRKE 389 (506)
Q Consensus 314 ~~aL~~~~~~ll~~risp~----f~~Wg~~mrv~~y~~pW~~d~~~~d~y~sd~~l~aY~vP~~~~~~g~~a~~~~lk~~ 389 (506)
|..||+.++.|++.+|.|+ |.|=. + . .+ ..+.+ .. ..+.-| ...-.+|.++++++
T Consensus 83 f~~lD~i~D~l~~~g~~P~vel~f~p~~----~-~-~~----~~~~~----~~---~~~~~p----p~~~~~W~~lv~~~ 141 (486)
T PF01229_consen 83 FTYLDQILDFLLENGLKPFVELGFMPMA----L-A-SG----YQTVF----WY---KGNISP----PKDYEKWRDLVRAF 141 (486)
T ss_dssp -HHHHHHHHHHHHCT-EEEEEE-SB-GG----G-B-SS------EET----TT---TEE-S-----BS-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCEEEEEEEechhh----h-c-CC----CCccc----cc---cCCcCC----cccHHHHHHHHHHH
Confidence 6799999999999999995 44300 0 0 00 00000 00 000111 13456799999999
Q ss_pred HHHHHhc-C--chhHHhhhhcCCCCCc---------ccHHHHHHHHHHHHHhCCCCcEEEEeeeC
Q 010618 390 IELLRTK-A--HWKKAYFYLWDEPLNM---------EHYSSVRNMASELHAYAPDARVLTTYYCG 442 (506)
Q Consensus 390 ~~hLr~K-g--w~~kay~Y~~DEP~~~---------e~y~~ir~~a~~ir~~aPd~riLtT~~~g 442 (506)
++|+..+ | ..++.||=+|.||... +=++.++..++.||+++|++||--...|.
T Consensus 142 ~~h~~~RYG~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~p~~~vGGp~~~~ 206 (486)
T PF01229_consen 142 ARHYIDRYGIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVDPELKVGGPAFAW 206 (486)
T ss_dssp HHHHHHHHHHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH-TTSEEEEEEEET
T ss_pred HHHHHhhcCCccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhCCCCcccCccccc
Confidence 9999764 2 2233356689998641 23446788889999999999986544443
No 5
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=80.36 E-value=14 Score=35.56 Aligned_cols=100 Identities=15% Similarity=0.216 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHHHHhCcccCCCcCCCCceeEEeecCCCCCCCCCccccccccccceeeeeCCCCCCChh----hHHHH
Q 010618 310 SDEWYEALDQHFKWLLQYRISPFFCRWGESMRVLTYTCPWPADHPKSDEYFSDPRLAAYAVPYSPVLSSND----GAKDY 385 (506)
Q Consensus 310 s~e~~~aL~~~~~~ll~~risp~f~~Wg~~mrv~~y~~pW~~d~~~~d~y~sd~~l~aY~vP~~~~~~g~~----a~~~~ 385 (506)
.+..++.|++.++++.++.|....+- .-...|..+... ..... ..+.+
T Consensus 57 ~~~~~~~ld~~v~~a~~~gi~vild~--------h~~~~w~~~~~~--------------------~~~~~~~~~~~~~~ 108 (281)
T PF00150_consen 57 DETYLARLDRIVDAAQAYGIYVILDL--------HNAPGWANGGDG--------------------YGNNDTAQAWFKSF 108 (281)
T ss_dssp THHHHHHHHHHHHHHHHTT-EEEEEE--------EESTTCSSSTST--------------------TTTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhCCCeEEEEe--------ccCccccccccc--------------------cccchhhHHHHHhh
Confidence 35678999999999999999865321 111233111100 11111 24557
Q ss_pred HHHHHHHHHhcCchhHHhhhhcCCCCCc-----------ccH-HHHHHHHHHHHHhCCCCcEEEEe
Q 010618 386 VRKEIELLRTKAHWKKAYFYLWDEPLNM-----------EHY-SSVRNMASELHAYAPDARVLTTY 439 (506)
Q Consensus 386 lk~~~~hLr~Kgw~~kay~Y~~DEP~~~-----------e~y-~~ir~~a~~ir~~aPd~riLtT~ 439 (506)
++.++++++... ....+=++.||... +.| +.++++++.||+.+|+..|++..
T Consensus 109 ~~~la~~y~~~~--~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 109 WRALAKRYKDNP--PVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp HHHHHHHHTTTT--TTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred hhhhccccCCCC--cEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 778888886433 34455689999863 222 47789999999999998888777
No 6
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=78.52 E-value=41 Score=30.52 Aligned_cols=108 Identities=16% Similarity=0.217 Sum_probs=68.2
Q ss_pred cccCCCCCC-CCCCceEEEeecCceEEEEEEEccCcccCCCCCCcceEEEEccc-cCCCCCcccccCceEEEEeeecC--
Q 010618 62 ANVGPQEMP-RPLEPINLLAARNERESVQIALRPKVSWSSSSTAGVVQVQCSDL-CSASGDRLVVGQSLMLRRVVPML-- 137 (506)
Q Consensus 62 eKVfpde~P-~~~~~i~LsAaRGErvSFQlVLrs~~~~~s~~~l~~V~Vs~SDL-~S~sG~~ii~g~~Itlr~V~yVl-- 137 (506)
.-|+|+..- .....+.|...-|+...+|+.+... ++....|+|++.+- ++.+| .+.|..
T Consensus 4 ~p~~p~~Q~~~~~~YFdL~~~P~q~~~l~v~i~N~-----s~~~~tv~v~~~~A~Tn~nG------------~I~Y~~~~ 66 (121)
T PF06030_consen 4 TPVLPENQIDKNVSYFDLKVKPGQKQTLEVRITNN-----SDKEITVKVSANTATTNDNG------------VIDYSQNN 66 (121)
T ss_pred eecCCccccCCCCCeEEEEeCCCCEEEEEEEEEeC-----CCCCEEEEEEEeeeEecCCE------------EEEECCCC
Confidence 345666553 2357899999999999999999852 22222344433221 12222 122221
Q ss_pred -CC-CcccccCCC---CcceeeecCCCeeEEEEEEEcCCCCCCceeEEEEEEEe
Q 010618 138 -GV-PDALVPLDL---PVCQISLIPGETTAVWVSIDAPYAQPPGLYEGEIIITS 186 (506)
Q Consensus 138 -Gy-PD~LVP~d~---p~~~v~V~agqtQ~LWIdV~VP~dA~PG~Y~GtVtVt~ 186 (506)
.. +++-.++.+ ....+.|+|++++-+=++|.+|+..-.|..-|-|.|+.
T Consensus 67 ~~~d~sl~~~~~~~v~~~~~Vtl~~~~sk~V~~~i~~P~~~f~G~ilGGi~~~e 120 (121)
T PF06030_consen 67 PKKDKSLKYPFSDLVKIPKEVTLPPNESKTVTFTIKMPKKAFDGIILGGIYFSE 120 (121)
T ss_pred cccCcccCcchHHhccCCcEEEECCCCEEEEEEEEEcCCCCcCCEEEeeEEEEe
Confidence 01 011112210 11349999999999999999999999999999999975
No 7
>PF13731 WxL: WxL domain surface cell wall-binding
Probab=76.58 E-value=9.1 Score=37.29 Aligned_cols=79 Identities=25% Similarity=0.408 Sum_probs=48.8
Q ss_pred ceEEEEccccCCCCCcccccCceEEEEeeec--CC---CCc------ccccCCCCcceeeecCCCeeEEE----------
Q 010618 106 VVQVQCSDLCSASGDRLVVGQSLMLRRVVPM--LG---VPD------ALVPLDLPVCQISLIPGETTAVW---------- 164 (506)
Q Consensus 106 ~V~Vs~SDL~S~sG~~ii~g~~Itlr~V~yV--lG---yPD------~LVP~d~p~~~v~V~agqtQ~LW---------- 164 (506)
.|+|+.++|++.+|..| .+..|.+...... .+ -|- .|.+......-+.-.+++.+..|
T Consensus 105 ~L~v~~s~F~~~~~~~L-~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~A~~~~g~G~~~~~~~~~~~~ 183 (215)
T PF13731_consen 105 TLTVKLSPFTNADGDTL-PGATLTFNNGKVQSTANNTNTPTTVSSNITLTPGGQAQTVMSAAKGQGQGTWSYSFGDQDAT 183 (215)
T ss_pred EEEEEeccccccCCcCc-ccceEEecCceeEeecccccCCcccccceEeccCCcceeeEeecccccceEEEEEeCCcccc
Confidence 37888999999887765 5555665543332 11 111 12222111122233456666666
Q ss_pred ----EEEEcCCCCC--CceeEEEEEEE
Q 010618 165 ----VSIDAPYAQP--PGLYEGEIIIT 185 (506)
Q Consensus 165 ----IdV~VP~dA~--PG~Y~GtVtVt 185 (506)
|.+.||.++. +|.|+++|+=+
T Consensus 184 ~~~~v~L~VP~~~~~~ag~Yt~tlTWt 210 (215)
T PF13731_consen 184 ADTGVSLSVPANTAKQAGTYTATLTWT 210 (215)
T ss_pred cccceEEEeCCCCcccCCcEEEEEEEE
Confidence 8899999998 79999999865
No 8
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=75.20 E-value=17 Score=30.59 Aligned_cols=29 Identities=21% Similarity=0.209 Sum_probs=19.3
Q ss_pred CCCeeEEEEEEEcCCCCCCceeEEEEEEE
Q 010618 157 PGETTAVWVSIDAPYAQPPGLYEGEIIIT 185 (506)
Q Consensus 157 agqtQ~LWIdV~VP~dA~PG~Y~GtVtVt 185 (506)
....-.+-.++.+|+++..|.|+.++...
T Consensus 58 ~~~~G~~~~~~~lp~~~~~G~y~i~~~~~ 86 (99)
T PF01835_consen 58 TNENGIFSGSFQLPDDAPLGTYTIRVKTD 86 (99)
T ss_dssp TTCTTEEEEEEE--SS---EEEEEEEEET
T ss_pred eCCCCEEEEEEECCCCCCCEeEEEEEEEc
Confidence 34455677899999999999999999885
No 9
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=70.35 E-value=3.8 Score=37.78 Aligned_cols=53 Identities=23% Similarity=0.324 Sum_probs=41.4
Q ss_pred CeeEEEEEEEcCCCCCCceeEEEEEEEecCCcccccccccccchhhhHHhhhhcc
Q 010618 159 ETTAVWVSIDAPYAQPPGLYEGEIIITSKADTELSSQCLGKGEKHRLFMELRNCL 213 (506)
Q Consensus 159 qtQ~LWIdV~VP~dA~PG~Y~GtVtVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (506)
+..+.|+.|.+..+..+ ..-.|++++++..-.-...|+++||..|+.||+..|
T Consensus 88 ~~~~~w~rv~~~~~~~~--~~~~l~L~~~g~~veiG~fL~~~eR~~la~~L~~aL 140 (140)
T PF10003_consen 88 EFNPYWVRVELEEDPGP--GPPRLTLRSRGREVEIGRFLNPEEREELARELRRAL 140 (140)
T ss_pred EEcCCeEEEEEEcCCCC--CCcEEEEEECCEEEEEccCCCHHHHHHHHHHHHhhC
Confidence 45688999999998887 556677766555444557899999999999999764
No 10
>PF14352 DUF4402: Domain of unknown function (DUF4402)
Probab=67.89 E-value=5.7 Score=35.56 Aligned_cols=32 Identities=28% Similarity=0.506 Sum_probs=25.2
Q ss_pred ecCCCeeEEEE--EEEcCCCCCCceeEEEEEEEe
Q 010618 155 LIPGETTAVWV--SIDAPYAQPPGLYEGEIIITS 186 (506)
Q Consensus 155 V~agqtQ~LWI--dV~VP~dA~PG~Y~GtVtVt~ 186 (506)
+..+....++| ++.|++++++|.|+|+++|+.
T Consensus 95 ~~~~g~~~~~VGGtL~v~~~~~~G~YsGt~~VtV 128 (130)
T PF14352_consen 95 LDTGGSATFNVGGTLNVPANQAAGTYSGTFTVTV 128 (130)
T ss_pred ecCCCcEEEEEEEEEEcCCCCCCeEEEEEEEEEE
Confidence 33444556666 589999999999999999985
No 11
>COG1470 Predicted membrane protein [Function unknown]
Probab=66.00 E-value=8.3 Score=42.83 Aligned_cols=33 Identities=36% Similarity=0.457 Sum_probs=30.9
Q ss_pred eecCCCeeEEEEEEEcCCCCCCceeEEEEEEEe
Q 010618 154 SLIPGETTAVWVSIDAPYAQPPGLYEGEIIITS 186 (506)
Q Consensus 154 ~V~agqtQ~LWIdV~VP~dA~PG~Y~GtVtVt~ 186 (506)
.|.||+.-.+=++|.||++|.||.|+.+|+.++
T Consensus 437 sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~ks 469 (513)
T COG1470 437 SLEPGESKTVSLTITVPEDAGAGDYRITITAKS 469 (513)
T ss_pred ccCCCCcceEEEEEEcCCCCCCCcEEEEEEEee
Confidence 478899999999999999999999999999987
No 12
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=61.23 E-value=8.7 Score=33.46 Aligned_cols=39 Identities=26% Similarity=0.393 Sum_probs=32.0
Q ss_pred ceeeecCCCeeEEEEEEEcCCCCCC---ceeEEEEEEEecCC
Q 010618 151 CQISLIPGETTAVWVSIDAPYAQPP---GLYEGEIIITSKAD 189 (506)
Q Consensus 151 ~~v~V~agqtQ~LWIdV~VP~dA~P---G~Y~GtVtVt~~~~ 189 (506)
..+.|+||+++-+=|++.+|++..+ ..|.|-|.+++..+
T Consensus 62 ~~vTV~ag~s~~v~vti~~p~~~~~~~~~~~eG~I~~~~~~~ 103 (112)
T PF06280_consen 62 DTVTVPAGQSKTVTVTITPPSGLDASNGPFYEGFITFKSSDG 103 (112)
T ss_dssp EEEEE-TTEEEEEEEEEE--GGGHHTT-EEEEEEEEEESSTT
T ss_pred CeEEECCCCEEEEEEEEEehhcCCcccCCEEEEEEEEEcCCC
Confidence 5799999999999999999998886 99999999997443
No 13
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=59.64 E-value=14 Score=37.77 Aligned_cols=108 Identities=18% Similarity=0.262 Sum_probs=59.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhCcccCCCc-CCCCceeEEeec-CCCCCCCCCccccccccccceeeeeCCCCCCChhh
Q 010618 304 FGVRHGSDEWYEALDQHFKWLLQYRISPFFC-RWGESMRVLTYT-CPWPADHPKSDEYFSDPRLAAYAVPYSPVLSSNDG 381 (506)
Q Consensus 304 ~gv~~~s~e~~~aL~~~~~~ll~~risp~f~-~Wg~~mrv~~y~-~pW~~d~~~~d~y~sd~~l~aY~vP~~~~~~g~~a 381 (506)
+.......++|+.|++.++.|.+++|.+... -||.+ |. +.|.+....+ +.+.
T Consensus 77 ~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~-----~~~~~Wg~~~~~m---------------------~~e~ 130 (289)
T PF13204_consen 77 FDFTRPNPAYFDHLDRRIEKANELGIEAALVPFWGCP-----YVPGTWGFGPNIM---------------------PPEN 130 (289)
T ss_dssp ---TT----HHHHHHHHHHHHHHTT-EEEEESS-HHH-----HH-------TTSS----------------------HHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCc-----cccccccccccCC---------------------CHHH
Confidence 4444556899999999999999999997622 23222 21 2444332222 5567
Q ss_pred HHHHHHHHHHHHHhcC--chhHHhhhhcCCCCCcccHHHHHHHHHHHHHhCCCCcEEEEeeeCC
Q 010618 382 AKDYVRKEIELLRTKA--HWKKAYFYLWDEPLNMEHYSSVRNMASELHAYAPDARVLTTYYCGP 443 (506)
Q Consensus 382 ~~~~lk~~~~hLr~Kg--w~~kay~Y~~DEP~~~e~y~~ir~~a~~ir~~aPd~riLtT~~~gp 443 (506)
++.|+|=.++.+++.. ||-.+--| .+.. +.-+.+++|++.||+.+|.- |.|+-.++
T Consensus 131 ~~~Y~~yv~~Ry~~~~NviW~l~gd~-~~~~---~~~~~w~~~~~~i~~~dp~~--L~T~H~~~ 188 (289)
T PF13204_consen 131 AERYGRYVVARYGAYPNVIWILGGDY-FDTE---KTRADWDAMARGIKENDPYQ--LITIHPCG 188 (289)
T ss_dssp HHHHHHHHHHHHTT-SSEEEEEESSS---TT---SSHHHHHHHHHHHHHH--SS---EEEEE-B
T ss_pred HHHHHHHHHHHHhcCCCCEEEecCcc-CCCC---cCHHHHHHHHHHHHhhCCCC--cEEEeCCC
Confidence 8999999999998874 45433332 1212 34458889999999999987 77774443
No 14
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=58.77 E-value=19 Score=31.48 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=32.4
Q ss_pred eeecCCCeeEEEEEEEcCCCCCCceeEEEEEEEecC
Q 010618 153 ISLIPGETTAVWVSIDAPYAQPPGLYEGEIIITSKA 188 (506)
Q Consensus 153 v~V~agqtQ~LWIdV~VP~dA~PG~Y~GtVtVt~~~ 188 (506)
=.+.+|+..-..+++.||...++|.|+++++++...
T Consensus 86 CPi~~G~~~~~~~~~~i~~~~p~~~~~i~~~l~d~~ 121 (134)
T PF02221_consen 86 CPIKAGEYYTYTYTIPIPKIYPPGKYTIQWKLTDQD 121 (134)
T ss_dssp STBTTTEEEEEEEEEEESTTSSSEEEEEEEEEEETT
T ss_pred CccCCCcEEEEEEEEEcccceeeEEEEEEEEEEeCC
Confidence 357899999999999999999999999999999743
No 15
>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure. These proteins belong to the ML domain family.
Probab=58.45 E-value=18 Score=32.28 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=29.3
Q ss_pred eeecCCCeeEEEEEEEcCCCCCCceeEEEEEEEe
Q 010618 153 ISLIPGETTAVWVSIDAPYAQPPGLYEGEIIITS 186 (506)
Q Consensus 153 v~V~agqtQ~LWIdV~VP~dA~PG~Y~GtVtVt~ 186 (506)
=.+.+|+.. +-.++.||...++|.|+++.++.+
T Consensus 77 CPi~~G~~~-~~~~~~ip~~~P~g~y~v~~~l~d 109 (122)
T cd00917 77 CPIEPGDKF-LTKLVDLPGEIPPGKYTVSARAYT 109 (122)
T ss_pred CCcCCCcEE-EEEEeeCCCCCCCceEEEEEEEEC
Confidence 457788887 888899999999999999999986
No 16
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=53.94 E-value=80 Score=33.65 Aligned_cols=138 Identities=12% Similarity=0.041 Sum_probs=88.7
Q ss_pred ChhHHhhhcCCCCCCHHHHHHHHHHHHHHHhCcccCCCcCCCCceeEEeecCCCCCCCCCccccccccccceeeeeCCCC
Q 010618 296 SDTVIEDRFGVRHGSDEWYEALDQHFKWLLQYRISPFFCRWGESMRVLTYTCPWPADHPKSDEYFSDPRLAAYAVPYSPV 375 (506)
Q Consensus 296 s~~~i~~~~gv~~~s~e~~~aL~~~~~~ll~~risp~f~~Wg~~mrv~~y~~pW~~d~~~~d~y~sd~~l~aY~vP~~~~ 375 (506)
+....+++ .-++-+.++++....-.+..+++-.++.. -+....|||.+..... ..|.-+|...
T Consensus 78 s~~~~~~~-~~~~~~~el~~~s~~~a~~Are~~~~~~~-------~v~gsiGp~~A~l~~g---------~eytg~Y~~~ 140 (317)
T KOG1579|consen 78 SSDGFEEY-VEEEELIELYEKSVELADLARERLGEETG-------YVAGSIGPYGATLADG---------SEYTGIYGDN 140 (317)
T ss_pred cchHHhhh-hhhHHHHHHHHHHHHHHHHHHHHhccccc-------eeeeecccccceecCC---------cccccccccc
Confidence 33444555 45555666666665555555554433331 1333455654433322 2355666654
Q ss_pred CCChhhHHHHHHHHHHHHHhcCchhHHhhhhcCCCCCcccHHHHHHHHHHHHHhCCCCcEEEEeeeCCCCCCCCCCccee
Q 010618 376 LSSNDGAKDYVRKEIELLRTKAHWKKAYFYLWDEPLNMEHYSSVRNMASELHAYAPDARVLTTYYCGPSDAPLGPTPFES 455 (506)
Q Consensus 376 ~~g~~a~~~~lk~~~~hLr~Kgw~~kay~Y~~DEP~~~e~y~~ir~~a~~ir~~aPd~riLtT~~~gp~d~~~~~~~fe~ 455 (506)
.+- +..++|.|.-++.+-++| -+.. .=|-. .+...-..+.+.++.-.|+.++-+|..|.+..--.-.++||.
T Consensus 141 ~~~-~el~~~~k~qle~~~~~g-vD~L----~fETi--p~~~EA~a~l~~l~~~~~~~p~~is~t~~d~g~l~~G~t~e~ 212 (317)
T KOG1579|consen 141 VEF-EELYDFFKQQLEVFLEAG-VDLL----AFETI--PNVAEAKAALELLQELGPSKPFWISFTIKDEGRLRSGETGEE 212 (317)
T ss_pred cCH-HHHHHHHHHHHHHHHhCC-CCEE----EEeec--CCHHHHHHHHHHHHhcCCCCcEEEEEEecCCCcccCCCcHHH
Confidence 333 348999999999999999 3322 22421 133356677788888899999999999999998899999999
Q ss_pred ecc
Q 010618 456 FVK 458 (506)
Q Consensus 456 f~~ 458 (506)
++-
T Consensus 213 ~~~ 215 (317)
T KOG1579|consen 213 AAQ 215 (317)
T ss_pred HHH
Confidence 976
No 17
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=45.16 E-value=30 Score=34.32 Aligned_cols=97 Identities=11% Similarity=0.178 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhCcccCC--CcCCCCceeEEeecCCCCCCCCCccccccccccceeeeeCCCCCCChhhHHHHHHHHHH
Q 010618 314 YEALDQHFKWLLQYRISPF--FCRWGESMRVLTYTCPWPADHPKSDEYFSDPRLAAYAVPYSPVLSSNDGAKDYVRKEIE 391 (506)
Q Consensus 314 ~~aL~~~~~~ll~~risp~--f~~Wg~~mrv~~y~~pW~~d~~~~d~y~sd~~l~aY~vP~~~~~~g~~a~~~~lk~~~~ 391 (506)
|+.+++.++|+.++.|... .+-|+.+ .| .|+... + + -.-.+++.+|++..++
T Consensus 15 ~~~~D~~~~~a~~~gi~v~gH~l~W~~~-------------~P---~W~~~~-------~--~-~~~~~~~~~~i~~v~~ 68 (254)
T smart00633 15 FSGADAIVNFAKENGIKVRGHTLVWHSQ-------------TP---DWVFNL-------S--K-ETLLARLENHIKTVVG 68 (254)
T ss_pred hHHHHHHHHHHHHCCCEEEEEEEeeccc-------------CC---HhhhcC-------C--H-HHHHHHHHHHHHHHHH
Confidence 6788899999999888743 1223332 11 122110 0 0 0012347788888888
Q ss_pred HHHhcCchhHHhhhhcCCCCCcc-------cH------HHHHHHHHHHHHhCCCCcEEEEee
Q 010618 392 LLRTKAHWKKAYFYLWDEPLNME-------HY------SSVRNMASELHAYAPDARVLTTYY 440 (506)
Q Consensus 392 hLr~Kgw~~kay~Y~~DEP~~~e-------~y------~~ir~~a~~ir~~aPd~riLtT~~ 440 (506)
|++.+.. +.-++.||.+.. .| +.++.+.+.+|+++|++|++..-|
T Consensus 69 ry~g~i~----~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy 126 (254)
T smart00633 69 RYKGKIY----AWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDY 126 (254)
T ss_pred HhCCcce----EEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEecc
Confidence 8886633 133678876521 12 678899999999999999998754
No 18
>smart00737 ML Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
Probab=38.70 E-value=60 Score=28.20 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=27.7
Q ss_pred eecCCCeeEEEEEEEcCCCCCCceeEEEEEEEec
Q 010618 154 SLIPGETTAVWVSIDAPYAQPPGLYEGEIIITSK 187 (506)
Q Consensus 154 ~V~agqtQ~LWIdV~VP~dA~PG~Y~GtVtVt~~ 187 (506)
.+.+|+..-.=.++.||...++|.|++++++++.
T Consensus 73 Pl~~G~~~~~~~~~~v~~~~P~~~~~v~~~l~d~ 106 (118)
T smart00737 73 PIEKGETVNYTNSLTVPGIFPPGKYTVKWELTDE 106 (118)
T ss_pred CCCCCeeEEEEEeeEccccCCCeEEEEEEEEEcC
Confidence 4677886555567799999999999999999863
No 19
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=30.75 E-value=35 Score=30.53 Aligned_cols=38 Identities=29% Similarity=0.276 Sum_probs=31.8
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHHHHhCC-CCcEEEEee
Q 010618 403 YFYLWDEPLNMEHYSSVRNMASELHAYAP-DARVLTTYY 440 (506)
Q Consensus 403 y~Y~~DEP~~~e~y~~ir~~a~~ir~~aP-d~riLtT~~ 440 (506)
.+.+.|||..-=|.+..+.+++.+++... +..++.|+-
T Consensus 259 ~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTH 297 (303)
T PF13304_consen 259 SILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTH 297 (303)
T ss_dssp SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES
T ss_pred eEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCc
Confidence 44589999865588899999999999987 899998874
No 20
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=29.79 E-value=96 Score=32.81 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHHHhcCc----hh--HHhhhhcCCCCC------cccHHHHHHHHHHHHHhCCCCcEE
Q 010618 380 DGAKDYVRKEIELLRTKAH----WK--KAYFYLWDEPLN------MEHYSSVRNMASELHAYAPDARVL 436 (506)
Q Consensus 380 ~a~~~~lk~~~~hLr~Kgw----~~--kay~Y~~DEP~~------~e~y~~ir~~a~~ir~~aPd~riL 436 (506)
.+|++++.+-++.|.+||. ++ -+|.| +.+... .+.++.++.+++.+|+..|+++|+
T Consensus 143 ~~W~~il~~rl~~l~~kGfDGvfLD~lDsy~~-~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II 210 (315)
T TIGR01370 143 PEWKAIAFSYLDRVIAQGFDGVYLDLIDAFEY-WAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVII 210 (315)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEeeccchhhhh-hcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 3699998888999999997 44 34442 222111 235668888888889999999886
No 21
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=27.43 E-value=34 Score=38.24 Aligned_cols=42 Identities=43% Similarity=0.964 Sum_probs=34.3
Q ss_pred cceeecccccccCccceeeecc----eee--ecChhhhHH--HHHHhcCCCCcee
Q 010618 452 PFESFVKVPKFLRPHTQIYCTS----EWV--LGNREDLVK--DIVTELQPENGMV 498 (506)
Q Consensus 452 ~fe~f~~v~~~l~~~~~~~~~~----~~~--~~~~~d~~~--~~~~~~~~~~~~~ 498 (506)
.|-.| ||.|+|| .||.+ -|| -|+-||++| +++.||-|+|-.+
T Consensus 341 ~fPgf--VpayIrP---LFc~G~GPFRW~aLSgdpeDi~~tD~~~~el~p~n~~l 390 (561)
T COG2987 341 DFPGF--VPAYIRP---LFCEGIGPFRWVALSGDPEDIYKTDAAVKELFPDNKHL 390 (561)
T ss_pred cCCcc--hHHhhhh---hhhcCcCCeeEEEecCCHHHHHHHHHHHHHhCCCcHHH
Confidence 45566 8999999 99987 587 499999997 6889999998654
No 22
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=25.57 E-value=1.2e+02 Score=31.17 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=18.8
Q ss_pred cHHHHHHHHHHHHHhCCCCcEEEEe
Q 010618 415 HYSSVRNMASELHAYAPDARVLTTY 439 (506)
Q Consensus 415 ~y~~ir~~a~~ir~~aPd~riLtT~ 439 (506)
--+...++|+.||+.+|+++|+---
T Consensus 155 l~~r~i~~AkaiK~~DP~a~v~GP~ 179 (239)
T PF12891_consen 155 LRDRSIEYAKAIKAADPDAKVFGPV 179 (239)
T ss_dssp HHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCCeEeech
Confidence 3345667899999999999999544
No 23
>PF08428 Rib: Rib/alpha-like repeat; InterPro: IPR012706 This entry represents a region of about 79 amino acids found tandemly repeated up to fourteen times within the proteins that contain it. The repeats lack cysteines and are highly conserved, even at the DNA level, within and between proteins []. Proteins containing these repeats include the Rib and alpha surface antigens of group B Streptococcus, Esp of Enterococcus faecalis (Streptococcus faecalis), and related proteins of Lactobacillus. Most members of this protein family also have the cell wall anchor motif, LPXTG, shared by many staphyloccal and streptococcal surface antigens. These repeats are thought to define protective epitopes and may play a role in generating phenotypic and genotypic variation [].
Probab=25.14 E-value=2.2e+02 Score=23.10 Aligned_cols=31 Identities=29% Similarity=0.489 Sum_probs=23.9
Q ss_pred eeecCCCeeEEEEEEEcCCCCCCceeEEEEEEEe
Q 010618 153 ISLIPGETTAVWVSIDAPYAQPPGLYEGEIIITS 186 (506)
Q Consensus 153 v~V~agqtQ~LWIdV~VP~dA~PG~Y~GtVtVt~ 186 (506)
-.|++|+. --|.+ .|....||.|.+.|+|+=
T Consensus 19 ~~lP~gt~-~~w~~--~pdt~~~G~~~~~V~Vty 49 (65)
T PF08428_consen 19 DNLPAGTT-YSWKD--KPDTSKPGTKTGKVKVTY 49 (65)
T ss_pred ccCCCCcc-eeecc--CCccccCccEEEEEEEEc
Confidence 34555544 46776 899999999999999984
No 24
>PF00868 Transglut_N: Transglutaminase family; InterPro: IPR001102 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) (TGase) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ]. Transglutaminases are widely distributed in various organs, tissues and body fluids. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. There are commonly three domains: N-terminal, middle (IPR013808 from INTERPRO) and C-terminal (IPR013807 from INTERPRO). This entry represents the N-terminal domain found in transglutaminases.; GO: 0018149 peptide cross-linking; PDB: 1L9N_B 1NUF_A 1NUD_A 1NUG_B 1L9M_A 1KV3_C 3S3S_A 2Q3Z_A 3LY6_A 3S3P_A ....
Probab=24.06 E-value=90 Score=28.09 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=20.9
Q ss_pred ecCCCeeEEEEEEEcCCCCCCceeEEEEEEE
Q 010618 155 LIPGETTAVWVSIDAPYAQPPGLYEGEIIIT 185 (506)
Q Consensus 155 V~agqtQ~LWIdV~VP~dA~PG~Y~GtVtVt 185 (506)
+.......+=|.|.+|++|+-|.|+-.|.++
T Consensus 87 v~~~~~~~~tv~V~spa~A~VG~y~l~v~~~ 117 (118)
T PF00868_consen 87 VESQDGNSVTVSVTSPANAPVGRYKLSVETK 117 (118)
T ss_dssp EEEEETTEEEEEEE--TTS--EEEEEEEEEE
T ss_pred EEecCCCEEEEEEECCCCCceEEEEEEEEEe
Confidence 3344444578899999999999999999886
No 25
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=23.65 E-value=1.8e+02 Score=29.15 Aligned_cols=64 Identities=23% Similarity=0.430 Sum_probs=47.6
Q ss_pred ccHHHHHHHHHHHHHhCCCCcEEEEeeeCCCCCCCCCCcceeecccccccCccceeeecceeeecChhhhHHHHHHhcCC
Q 010618 414 EHYSSVRNMASELHAYAPDARVLTTYYCGPSDAPLGPTPFESFVKVPKFLRPHTQIYCTSEWVLGNREDLVKDIVTELQP 493 (506)
Q Consensus 414 e~y~~ir~~a~~ir~~aPd~riLtT~~~gp~d~~~~~~~fe~f~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 493 (506)
...+.++.+++.+.+.- ++..+.. +|+|..|+..+ +|-|-...+++ +.|..+|.
T Consensus 13 ~~~~~l~~i~d~l~~~~--ipf~v~v-------------------IP~~~d~~~~~----~~~l~~~~~f~-~~L~~~~~ 66 (243)
T PF10096_consen 13 SDLEKLKEIADYLYKYG--IPFSVAV-------------------IPVYVDPNGGI----TVNLSDNPEFV-EYLRYLQA 66 (243)
T ss_pred CCHHHHHHHHHHHHHCC--CCEEEEE-------------------EecccCCCCcc----cccchhhHHHH-HHHHHHHh
Confidence 46779999999999865 5544433 67778887777 66676677766 46788999
Q ss_pred CCceeeeEeecc
Q 010618 494 ENGMVDICLHGT 505 (506)
Q Consensus 494 ~~~~~~~~~~~~ 505 (506)
.+|+ |.|||-
T Consensus 67 ~Gg~--I~lHGY 76 (243)
T PF10096_consen 67 RGGE--IVLHGY 76 (243)
T ss_pred cCCE--EEEEec
Confidence 9997 478984
No 26
>PF05205 COMPASS-Shg1: COMPASS (Complex proteins associated with Set1p) component shg1
Probab=23.07 E-value=91 Score=27.73 Aligned_cols=38 Identities=13% Similarity=0.189 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCchhHHhhhhcCCCCCcccHHHHHHHHH
Q 010618 387 RKEIELLRTKAHWKKAYFYLWDEPLNMEHYSSVRNMAS 424 (506)
Q Consensus 387 k~~~~hLr~Kgw~~kay~Y~~DEP~~~e~y~~ir~~a~ 424 (506)
+++++++|.+|+|++.---+|++-...+.|+.++.-..
T Consensus 1 ~~Lv~~fKk~G~FD~lRk~~l~~~~~~~~~~~l~~~v~ 38 (106)
T PF05205_consen 1 KQLVEEFKKQGHFDKLRKECLADFDTSPAYQNLRQRVE 38 (106)
T ss_pred ChHHHHHHhCCChHHHHHHHHHhccccHHHHHHHHHHH
Confidence 35789999999999888778887776777877665543
No 27
>PF09099 Qn_am_d_aIII: Quinohemoprotein amine dehydrogenase, alpha subunit domain III; InterPro: IPR015183 This domain is predominantly found in the prokaryotic protein quinohemoprotein amine dehydrogenase, adopting an immunoglobulin-like beta-sandwich fold, with seven strands arranged into two beta sheets; the fold is possibly related to the immunoglobulin and/or fibronectin type III superfamilies. The precise function of this domain has not, as yet, been defined []. ; PDB: 1JMZ_A 1JMX_A 1PBY_A 1JJU_A.
Probab=22.51 E-value=88 Score=26.97 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=19.5
Q ss_pred eeEEEEEEEcCCCCCCceeEEEE
Q 010618 160 TTAVWVSIDAPYAQPPGLYEGEI 182 (506)
Q Consensus 160 tQ~LWIdV~VP~dA~PG~Y~GtV 182 (506)
.-.++++|.+.++++||.|+..+
T Consensus 47 ~~~v~v~V~~aa~a~~G~~~v~v 69 (81)
T PF09099_consen 47 PDEVVVRVKAAADAAPGIRTVRV 69 (81)
T ss_dssp STCEEEEEEEECTSSSEEEEEEE
T ss_pred CCEEEEEEEEcCCCCCccEEEEe
Confidence 33689999999999999998655
No 28
>PRK05414 urocanate hydratase; Provisional
Probab=21.72 E-value=54 Score=37.08 Aligned_cols=39 Identities=44% Similarity=1.029 Sum_probs=31.0
Q ss_pred ceeecccccccCccceeeecc----eee--ecChhhhHH--HHHHhcCCCCc
Q 010618 453 FESFVKVPKFLRPHTQIYCTS----EWV--LGNREDLVK--DIVTELQPENG 496 (506)
Q Consensus 453 fe~f~~v~~~l~~~~~~~~~~----~~~--~~~~~d~~~--~~~~~~~~~~~ 496 (506)
|-+| ||.|||| +||.+ -|| -|+.|||.| +++.|+-|+|.
T Consensus 342 ~P~f--V~~~irp---lF~~G~GPFRWvalSGdpeDi~~TD~~~~e~~~~~~ 388 (556)
T PRK05414 342 FPGF--VPAYIRP---LFCEGKGPFRWVALSGDPEDIYKTDAAVKELFPDDE 388 (556)
T ss_pred CCCc--hhhhcch---hhhcCCCCceEEEcCCCHHHHHHHHHHHHHhcccch
Confidence 4455 8999999 69976 477 499999987 68888888764
No 29
>PF14734 DUF4469: Domain of unknown function (DUF4469) with IG-like fold
Probab=21.51 E-value=95 Score=27.74 Aligned_cols=23 Identities=17% Similarity=0.110 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCCceeEEEEEEEe
Q 010618 164 WVSIDAPYAQPPGLYEGEIIITS 186 (506)
Q Consensus 164 WIdV~VP~dA~PG~Y~GtVtVt~ 186 (506)
=+.+.||++-++|.|+.+|+=+-
T Consensus 65 ~l~~~lPa~L~~G~Y~l~V~Tq~ 87 (102)
T PF14734_consen 65 RLIFILPADLAAGEYTLEVRTQY 87 (102)
T ss_pred EEEEECcCccCceEEEEEEEEEe
Confidence 36889999999999999998875
Done!