BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010619
(506 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N9V|A Chain A, Crystal Structure Of Inpp5b
pdb|3N9V|B Chain B, Crystal Structure Of Inpp5b
Length = 313
Score = 178 bits (452), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 138/241 (57%), Gaps = 13/241 (5%)
Query: 230 HGQRSYRLIASKQMVGIFLSVWVRNDLVPHIGHLRFSSVGRGIMGCLGNKGCTSISMSVY 289
H Y + ++VGI L ++V+ + +I + +VG GIMG +GNKG +I +
Sbjct: 71 HPDAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFH 130
Query: 290 NTSFCFVCCHLASGEKEGDELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHDRVIW 349
NTS C V HLA+ +E + +RN D +I QF C+ P+P P I +HD ++W
Sbjct: 131 NTSICVVNSHLAAHIEEYE--RRNQDYKDICSRMQF---CQ-PDPSLPPLTISNHDVILW 184
Query: 350 LGDLNYRV-ALSYEKTRLLLEDNDWDSLLEKDQLNIERESGRAFNGFNEGRIFFAPTYKY 408
LGDLNYR+ L EK + L+E+ D+ L DQL I+ + F GF EG + F PTYKY
Sbjct: 185 LGDLNYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKY 244
Query: 409 SHNSDCYAGETVKSKKKRRTPAWCDRILWRGNGIEQLSYIRGES-RFSDHRPVCAVFSVE 467
SD + + +K R PAWCDRILW+G I QLSY + + SDH+PV +VF +
Sbjct: 245 DTGSDDW-----DTSEKCRAPAWCDRILWKGKNITQLSYQSHMALKTSDHKPVSSVFDIG 299
Query: 468 V 468
V
Sbjct: 300 V 300
>pdb|3MTC|A Chain A, Crystal Structure Of Inpp5b In Complex With
Phosphatidylinositol 4- Phosphate
Length = 313
Score = 178 bits (451), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 138/241 (57%), Gaps = 13/241 (5%)
Query: 230 HGQRSYRLIASKQMVGIFLSVWVRNDLVPHIGHLRFSSVGRGIMGCLGNKGCTSISMSVY 289
H Y + ++VGI L ++V+ + +I + +VG GIMG +GNKG +I +
Sbjct: 74 HPDAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFH 133
Query: 290 NTSFCFVCCHLASGEKEGDELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHDRVIW 349
NTS C V HLA+ +E + +RN D +I QF C+ P+P P I +HD ++W
Sbjct: 134 NTSICVVNSHLAAHIEEYE--RRNQDYKDICSRMQF---CQ-PDPSLPPLTISNHDVILW 187
Query: 350 LGDLNYRV-ALSYEKTRLLLEDNDWDSLLEKDQLNIERESGRAFNGFNEGRIFFAPTYKY 408
LGDLNYR+ L EK + L+E+ D+ L DQL I+ + F GF EG + F PTYKY
Sbjct: 188 LGDLNYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKY 247
Query: 409 SHNSDCYAGETVKSKKKRRTPAWCDRILWRGNGIEQLSYIRGES-RFSDHRPVCAVFSVE 467
SD + + +K R PAWCDRILW+G I QLSY + + SDH+PV +VF +
Sbjct: 248 DTGSDDW-----DTSEKCRAPAWCDRILWKGKNITQLSYQSHMALKTSDHKPVSSVFDIG 302
Query: 468 V 468
V
Sbjct: 303 V 303
>pdb|1I9Y|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin
pdb|1I9Z|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin In Complex With
Inositol (1,4)-Bisphosphate And Calcium Ion
Length = 347
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 123/247 (49%), Gaps = 22/247 (8%)
Query: 228 CSHGQRSYRLIASKQMVGIFLSVWVRNDLVPHIGHLRFSSVGRGIMGCLGNKGCTSISMS 287
C+ G Y + S Q+VG L ++ + +P I ++ + G+ G GNKG +I
Sbjct: 96 CTSGP-GYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFD 154
Query: 288 VYNTSFCFVCCHLASGEKEGDELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHDRV 347
+T CF+ HLA+G DE R+ D I +F + I +HD V
Sbjct: 155 YEDTGLCFITSHLAAGYTNYDE--RDHDYRTIASGLRFRR----------GRSIFNHDYV 202
Query: 348 IWLGDLNYRVALSYEKTRLLLEDNDWDSLLEKDQLNIERESGRAFNGFNEGRIFFAPTYK 407
+W GD NYR++L+YE+ + L E DQLN + +G+ F F+E I F PTYK
Sbjct: 203 VWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYK 262
Query: 408 YSHNSDCYAGETVKSKKKRRTPAWCDRILWRGNGIEQLSYIRGESRFSDHRPVCAVFS-- 465
+ +D Y + K R PAW DRIL+RG + SY +SDHRP+ A +
Sbjct: 263 FDIGTDIY-----DTSDKHRVPAWTDRILYRGELVPH-SYQSVPLYYSDHRPIYATYEAN 316
Query: 466 -VEVERD 471
V+V+R+
Sbjct: 317 IVKVDRE 323
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 36 TEIQRLRIYAATWNVGGKTPSNSLNLEDFLEVECSADIYVCGFQEIVKLSAGNVLVIEDN 95
+E + ++I+ A++N+ G + + L F E ADIYV GFQEIV+L+ V+
Sbjct: 20 SEHKNVKIFVASYNLNGCSATTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVI---SA 76
Query: 96 EPAAK--WLALIHQALN 110
+PA + W + + + LN
Sbjct: 77 DPAKRREWESCVKRLLN 93
>pdb|3NR8|B Chain B, Crystal Structure Of Human Ship2
pdb|3NR8|A Chain A, Crystal Structure Of Human Ship2
pdb|4A9C|A Chain A, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
pdb|4A9C|B Chain B, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
Length = 316
Score = 125 bits (314), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 119/240 (49%), Gaps = 13/240 (5%)
Query: 235 YRLIASKQMVGIFLSVWVRNDLVPHIGHLRFSSVGRGIMGCLGNKGCTSISMSVYNTSFC 294
YR IA + + I ++V V+ + I H+ SSV GI LGNKG +S TSF
Sbjct: 81 YRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFG 140
Query: 295 FVCCHLASGEKEGDELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHDRVIWLGDLN 354
FV CHL SG ++ +RN + +IL+ + G A + + + W GDLN
Sbjct: 141 FVNCHLTSGNEK--TARRNQNYLDILR-----LLSLGDRQLNAFDISLRFTHLFWFGDLN 193
Query: 355 YRVALSYEKTRLLLEDNDWDSLLEKDQLNIERESGRAFNGFNEGRIFFAPTYKYSHNS-D 413
YR+ + ++ + +++ LL DQLN+ERE + F F+E I F PTY+Y S D
Sbjct: 194 YRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSRD 253
Query: 414 CYAGETVKSKKKR-RTPAWCDRILWRGNGIEQL---SY-IRGESRFSDHRPVCAVFSVEV 468
YA K R P+WCDRILW+ + SY + SDH PV F V V
Sbjct: 254 TYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEVGV 313
>pdb|2XSW|A Chain A, Crystal Structure Of Human Inpp5e
pdb|2XSW|B Chain B, Crystal Structure Of Human Inpp5e
Length = 357
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 116/243 (47%), Gaps = 16/243 (6%)
Query: 235 YRLIASKQMVGIFLSVWVRNDLVPHIGHLRFSSVGRGIMGCLGNKGCTSISMSVYNTSFC 294
Y L++S +++S+++R DL+ + S+V I+ + KG IS + + TSF
Sbjct: 87 YVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFL 146
Query: 295 FVCCHLASGEKEGDELKRNADVAEILKSTQFPKICKGPNP--RTAPERIIDHDRVIWLGD 352
F+ H SG +G +R D +++ P+ NP +A + D V W GD
Sbjct: 147 FITSHFTSG--DGKVAERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGD 204
Query: 353 LNYRVALSYEKTRLLLEDN---DWDSLLEKDQLNIERESGRAFNGFNEGRIFFAPTYKYS 409
N+R++ LL D +LL+ DQL E G F GF E I F P+YK+
Sbjct: 205 FNFRLSGGRTVVDALLCQGLVVDVPALLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFD 264
Query: 410 HNSDCYAGETVKSKKKRRTPAWCDRILWRGNGIEQLSYIRGES----RFSDHRPVCAVFS 465
D Y S K+RTP++ DR+L+R + + S + SDHRPV +F
Sbjct: 265 IGKDTY-----DSTSKQRTPSYTDRVLYRSRHKGDICPVSYSSCPGIKTSDHRPVYGLFR 319
Query: 466 VEV 468
V+V
Sbjct: 320 VKV 322
>pdb|1NTF|A Chain A, Crystal Structure Of Cimex Nitrophorin
pdb|1Y21|A Chain A, Crystal Structure Of Cimex Nitrophorin No Complex
pdb|1SI6|X Chain X, Crystal Structure Of Cimex Nitrophorin Complex With Co
pdb|1YJH|A Chain A, Crystal Structure Of Cimex Nitrophorin Ferrous No Complex
pdb|2IMQ|X Chain X, Crystal Structure Of Ferrous Cimex Nitrophorin
Length = 282
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 69/128 (53%), Gaps = 13/128 (10%)
Query: 345 DRVIWLGDLNYRVALSYEKTRLLLEDNDWDSLLEKDQLNIERESGRAFNGFNEGRIFFAP 404
D + W+GDLN RV + + L++ N+ D L+ DQL +E + F+G+ E ++ F P
Sbjct: 164 DFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKEQ-KLFDGWTEPQVTFKP 222
Query: 405 TYKYSHNSDCYAGETVKSKKKRRTPAWCDRILWR---GNGIEQLSYIR-GESRFSDHRPV 460
TYK+ N+D Y TP+W DR L++ G I+ LSY + ++HRPV
Sbjct: 223 TYKFKPNTDEY--------DLSATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPV 274
Query: 461 CAVFSVEV 468
A F V +
Sbjct: 275 LAKFRVTL 282
>pdb|1JKG|B Chain B, Structural Basis For The Recognition Of A Nucleoporin Fg-
Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna Nuclear
Export Factor
pdb|1JN5|B Chain B, Structural Basis For The Recognition Of A Nucleoporin Fg-
Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna Export
Factor
Length = 250
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 15/94 (15%)
Query: 282 TSISMSVYNTSFCFVCCHLASGEKEGDEL-KRNADVAEILKSTQFPKICKGPNPRTAPER 340
T I++ N+ C V DEL RNA EI ++ P P P ++P
Sbjct: 147 TFIAVPASNSGLCIV----------NDELFVRNASSEEIQRAFAMP----APTPSSSPVP 192
Query: 341 IIDHDRVIWLGDLNYRVALSYEKTRLLLEDNDWD 374
+ ++ L + + ++ E ++ L+DN+WD
Sbjct: 193 TLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWD 226
>pdb|1KCG|C Chain C, Nkg2d In Complex With Ulbp3
Length = 178
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 39 QRLRIYAATWNVGGKTPSNSLNLEDFLEVECSADIYVCGFQEIVKLSAGNVLVIEDNEPA 98
QRLR+ A + TPS L L+ + EC AD Y+ G + L+ + N
Sbjct: 71 QRLRLELADTELEDFTPSGPLTLQVRMSCECEADGYIRGSWQF-SFDGRKFLLFDSNN-- 127
Query: 99 AKWLALIHQALNRPK 113
KW ++H R K
Sbjct: 128 RKW-TVVHAGARRMK 141
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human
Cytosolic Aconitase (Irp1)
pdb|2B3Y|A Chain A, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
pdb|2B3Y|B Chain B, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
Length = 888
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 245 GIFLSVWVRNDLVPHIGHLRFSSVGRGIMGCLGNKG 280
G+ + ++P++ L F VG G M C+GN G
Sbjct: 475 GVVTYYLQESGVMPYLSQLGFDVVGYGCMTCIGNSG 510
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SNP|B Chain B, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SN2|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Transferrin Receptor Ire B Rna
Length = 908
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 256 LVPHIGHLRFSSVGRGIMGCLGNKG 280
++P++ L F VG G M C+GN G
Sbjct: 506 VMPYLSQLGFDVVGYGSMTCIGNSG 530
>pdb|4HNL|A Chain A, Crystal Structure Of Enolase Egbg_01401 (Target
Efi-502226) From Enterococcus Gallinarum Eg2
Length = 421
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 40/113 (35%), Gaps = 9/113 (7%)
Query: 304 EKEGDELKRNADVAEILKSTQFPKICKGPNPRTA--PERIIDHDRVIWLGDLNYRVALSY 361
EK G++ + DV E L Q + K P E I+ D+ WL L + A
Sbjct: 216 EKYGNQFQMLHDVHERLHPNQAIQFAKAAEPYQLFFLEDILPPDQSHWLTQLRSQSATPI 275
Query: 362 EKTRLLLEDNDWDSLLEKDQLNIERESGRAFNGFNEGRIFFAPTYKYSHNSDC 414
L +W L++ Q++ R G P K +H D
Sbjct: 276 ATGELFNNPMEWQELVKNRQIDFMRAHVSQIGGIT-------PALKLAHFCDA 321
>pdb|3QLB|A Chain A, Enantiopyochelin Outer Membrane Tonb-Dependent Transporter
From Pseudomonas Fluorescens Bound To The
Ferri-Enantiopyochelin
pdb|3QLB|B Chain B, Enantiopyochelin Outer Membrane Tonb-Dependent Transporter
From Pseudomonas Fluorescens Bound To The
Ferri-Enantiopyochelin
Length = 748
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 382 LNIERESGRAFNGFNEGRIFFAPTYKYSHNSDC 414
+ +ER+SG F+ + + +FAP++ + N D
Sbjct: 246 VGLERDSGTQFDHIKDDKQYFAPSFTWKPNDDT 278
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,773,100
Number of Sequences: 62578
Number of extensions: 544315
Number of successful extensions: 1040
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1009
Number of HSP's gapped (non-prelim): 15
length of query: 506
length of database: 14,973,337
effective HSP length: 103
effective length of query: 403
effective length of database: 8,527,803
effective search space: 3436704609
effective search space used: 3436704609
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)