Query 010619
Match_columns 506
No_of_seqs 278 out of 1066
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 10:41:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010619.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010619hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mtc_A Type II inositol-1,4,5- 100.0 7.6E-95 2.6E-99 737.7 30.9 303 35-474 2-307 (313)
2 4a9c_A Phosphatidylinositol-3, 100.0 7.9E-90 2.7E-94 701.9 28.3 293 37-469 4-314 (316)
3 1i9z_A Synaptojanin, phosphati 100.0 8.2E-86 2.8E-90 681.1 28.8 318 28-482 12-331 (347)
4 2xsw_A 72 kDa inositol polypho 100.0 7E-82 2.4E-86 653.9 32.0 294 33-470 18-324 (357)
5 2imq_X Salivary nitrophorin; f 100.0 1.2E-66 4E-71 521.9 21.9 271 38-468 4-282 (282)
6 4gz1_A Tyrosyl-DNA phosphodies 99.3 5.5E-11 1.9E-15 111.4 17.0 66 274-356 97-162 (256)
7 3teb_A Endonuclease/exonucleas 99.2 1.4E-10 4.9E-15 110.4 15.3 62 276-357 120-181 (266)
8 4fva_A 5'-tyrosyl-DNA phosphod 99.2 8.4E-11 2.9E-15 110.4 11.5 67 276-356 103-169 (256)
9 4f1h_A Tyrosyl-DNA phosphodies 99.2 3.9E-10 1.3E-14 103.7 15.2 61 278-355 95-155 (250)
10 4gew_A 5'-tyrosyl-DNA phosphod 99.0 1.3E-09 4.6E-14 112.1 12.2 65 278-356 211-275 (362)
11 3g6s_A Putative endonuclease/e 98.8 3.1E-08 1.1E-12 95.1 13.9 61 276-355 113-175 (267)
12 3mpr_A Putative endonuclease/e 98.7 9.9E-08 3.4E-12 94.1 12.2 62 277-355 118-181 (298)
13 1zwx_A SMCL, sphingomyelinase- 98.4 1.1E-06 3.7E-11 85.6 11.0 70 276-358 128-201 (301)
14 3i41_A Beta-hemolysin; beta to 98.3 1.8E-06 6.1E-11 86.4 9.2 69 276-357 147-219 (317)
15 3l1w_A Uncharacterized protein 98.3 9.1E-06 3.1E-10 77.2 13.4 61 276-355 107-169 (257)
16 1ako_A Exonuclease III; AP-end 98.2 5.4E-06 1.8E-10 78.7 10.8 67 277-357 87-156 (268)
17 2ddr_A Sphingomyelin phosphodi 98.2 1.2E-05 4.2E-10 78.2 12.1 69 276-357 128-200 (306)
18 1vyb_A ORF2 contains A reverse 97.4 0.0016 5.3E-08 60.3 12.5 54 281-357 97-150 (238)
19 2jc4_A Exodeoxyribonuclease II 97.2 0.00096 3.3E-08 62.6 9.0 53 292-358 98-152 (256)
20 1wdu_A TRAS1 ORF2P; four-layer 97.0 0.0038 1.3E-07 59.0 11.2 58 277-356 101-158 (245)
21 2o3h_A DNA-(apurinic or apyrim 96.9 0.0028 9.6E-08 60.9 8.8 35 431-465 248-284 (285)
22 4b8c_D Glucose-repressible alc 96.5 0.00065 2.2E-08 75.8 1.5 63 289-356 545-607 (727)
23 2jc5_A Exodeoxyribonuclease; h 96.5 0.0023 7.7E-08 60.1 5.0 38 430-467 218-257 (259)
24 1hd7_A DNA-(apurinic or apyrim 96.2 0.0099 3.4E-07 58.8 8.0 37 42-81 61-97 (318)
25 3g91_A MTH0212, exodeoxyribonu 96.0 0.011 3.7E-07 56.4 6.8 38 432-469 221-260 (265)
26 2j63_A AP-endonuclease; base e 95.8 0.017 5.9E-07 61.5 8.4 35 432-466 430-466 (467)
27 2ei9_A Non-LTR retrotransposon 94.7 0.12 4.3E-06 49.4 9.6 35 43-81 8-42 (240)
28 2a40_B Deoxyribonuclease-1; WA 92.9 0.14 4.7E-06 48.8 6.1 26 279-304 111-139 (260)
29 3ngq_A CCR4-NOT transcription 84.1 1.3 4.3E-05 46.2 6.1 75 290-371 194-269 (398)
30 2voa_A AF_EXO, XTHA, exodeoxyr 79.8 1.6 5.5E-05 40.5 4.5 35 43-81 2-36 (257)
31 1ako_A Exonuclease III; AP-end 79.5 0.34 1.1E-05 45.3 -0.3 34 44-81 2-35 (268)
32 1sr4_B CDT B, cytolethal diste 77.5 3.6 0.00012 40.6 6.4 60 277-354 120-179 (261)
33 2jc5_A Exodeoxyribonuclease; h 74.3 0.38 1.3E-05 44.7 -1.6 36 43-81 2-37 (259)
34 2o3h_A DNA-(apurinic or apyrim 72.7 0.33 1.1E-05 46.3 -2.4 37 42-81 28-64 (285)
35 3g91_A MTH0212, exodeoxyribonu 71.7 0.33 1.1E-05 45.9 -2.7 36 43-81 4-39 (265)
36 1vyb_A ORF2 contains A reverse 70.8 0.47 1.6E-05 43.3 -1.8 37 42-81 7-44 (238)
37 2ei9_A Non-LTR retrotransposon 64.5 0.8 2.7E-05 43.7 -1.7 57 277-357 76-132 (240)
38 2f1n_A CDT B, cytolethal diste 64.1 1.8 6.3E-05 42.8 0.8 60 278-356 130-189 (262)
39 2ddr_A Sphingomyelin phosphodi 63.6 5.5 0.00019 37.9 4.1 15 452-466 291-305 (306)
40 2j63_A AP-endonuclease; base e 63.0 0.67 2.3E-05 49.2 -2.8 39 42-84 149-190 (467)
41 1hd7_A DNA-(apurinic or apyrim 62.9 0.73 2.5E-05 45.3 -2.4 52 291-357 163-215 (318)
42 2voa_A AF_EXO, XTHA, exodeoxyr 59.4 2.1 7.2E-05 39.6 0.3 35 431-465 216-256 (257)
43 3l1w_A Uncharacterized protein 54.3 2.6 8.9E-05 39.2 -0.1 35 431-467 213-252 (257)
44 2f1n_A CDT B, cytolethal diste 52.8 16 0.00054 36.1 5.2 36 44-81 17-56 (262)
45 3i41_A Beta-hemolysin; beta to 47.2 3.4 0.00012 40.6 -0.6 38 41-81 28-74 (317)
46 1sr4_B CDT B, cytolethal diste 42.5 8.2 0.00028 38.0 1.4 37 45-83 7-47 (261)
47 3pt1_A UPF0364 protein YMR027W 27.8 12 0.00042 39.8 -0.1 17 341-357 374-390 (471)
48 2yka_B ORF57 protein, 52 kDa i 29.0 17 0.00059 23.1 0.0 9 428-436 8-16 (26)
49 2a40_B Deoxyribonuclease-1; WA 23.2 20 0.00069 33.5 0.5 12 453-464 248-259 (260)
50 2fvt_A Conserved hypothetical 21.2 65 0.0022 28.4 3.3 30 46-78 43-75 (135)
51 1hnr_A H-NS; histone-like prot 20.5 40 0.0014 24.7 1.5 25 403-434 4-31 (47)
No 1
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=100.00 E-value=7.6e-95 Score=737.65 Aligned_cols=303 Identities=39% Similarity=0.691 Sum_probs=279.6
Q ss_pred CccceeEEEEEEEeeCCCCCCCCCCCcccccCC-CCCCcEEEEeeEEEEecCCCceeeecCcchHHHHHHHHHHHhCCCC
Q 010619 35 VTEIQRLRIYAATWNVGGKTPSNSLNLEDFLEV-ECSADIYVCGFQEIVKLSAGNVLVIEDNEPAAKWLALIHQALNRPK 113 (506)
Q Consensus 35 ~~~~~~~rifvgTWNV~g~~p~~~ldl~~wl~~-~~~~DiyviGfQEiV~Lna~~vl~~ED~~p~~kW~~lI~~aLN~~~ 113 (506)
||..+++|||||||||||..|+++ |.+||.. ..+||||||||||+ +|++++++. .|......|+..|.++|+.
T Consensus 2 yt~~~~~~i~v~TwNvng~~~~~~--l~~wL~~~~~~pDI~viGlQE~-~l~~~~~~~-~~~~~~~~W~~~i~~~L~~-- 75 (313)
T 3mtc_A 2 YTYIQNFRFFAGTYNVNGQSPKEC--LRLWLSNGIQAPDVYCVGFQEL-DLSKEAFFF-HDTPKEEEWFKAVSEGLHP-- 75 (313)
T ss_dssp CEEEEEEEEEEEEEECTTCCCCSC--THHHHSSSCCCCSEEEEEEECS-CCSHHHHTT-CCCHHHHHHHHHHHHHSCT--
T ss_pred CceeeccEEEEEEEEcCCccCchh--HHHHhcccCCCCCeEEEEEEec-ccchhhhcc-cCcchHHHHHHHHHHhcCC--
Confidence 899999999999999999998754 6999986 56899999999998 999999886 4777889999999999862
Q ss_pred CCCcccCCCCCCCCccCCCCCCCCCCCCCCCCCCcccccCchhhHhhhccccchhhhhccCCCCCCCchhhhhhhhcccc
Q 010619 114 NDSIYSTSESNSHTKQTNSNNNNNNSKDAKSPSSLNLFQKPSLKVLSRNLRADSTLLKACNCPIESPGRERRRIRKLSDR 193 (506)
Q Consensus 114 ~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~r~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 193 (506)
T Consensus 76 -------------------------------------------------------------------------------- 75 (313)
T 3mtc_A 76 -------------------------------------------------------------------------------- 75 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCccCCCccccccchhhhccCCCCCCCCcCCCCCCCeEEEEeeeeeceEEEEEEeCCCCCCcCceeEeeEeeccc
Q 010619 194 TSKLECNHESLLPQRDISSVVVELFSIPEIPASSCSHGQRSYRLIASKQMVGIFLSVWVRNDLVPHIGHLRFSSVGRGIM 273 (506)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~s~qmvGi~L~Vfvr~~l~~~I~~v~~~~v~tGi~ 273 (506)
+.+|++|++.||+||+|+||||+++.++|++|++++||||++
T Consensus 76 --------------------------------------~~~Y~~v~s~~lvGl~l~Vfvr~~~~~~i~~v~~~~v~tG~~ 117 (313)
T 3mtc_A 76 --------------------------------------DAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIM 117 (313)
T ss_dssp --------------------------------------TSCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECSGG
T ss_pred --------------------------------------CCCEEEEEEechhhhhhhhhhhhhhhhhcceeEeeeeccccc
Confidence 126999999999999999999999999999999999999999
Q ss_pred eecCCceEEEEEEEEeceEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcccccccEEEeccc
Q 010619 274 GCLGNKGCTSISMSVYNTSFCFVCCHLASGEKEGDELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHDRVIWLGDL 353 (506)
Q Consensus 274 G~~GNKGaVavr~~l~~ts~cFVn~HLaAg~~~~~~~rRN~D~~~Il~~~~F~~~~~~~~~~~~~~~i~dhD~vfw~GDL 353 (506)
|++||||||+|||.+++|+|||||||||||+++ .++||+||.+|++++.|++... ...+..|.+||+|||||||
T Consensus 118 g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~~--~~~Rn~d~~~I~~~l~f~~~~~----~~~~~~i~~~d~vfw~GDL 191 (313)
T 3mtc_A 118 GRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEE--YERRNQDYKDICSRMQFCQPDP----SLPPLTISNHDVILWLGDL 191 (313)
T ss_dssp GTSTTSEEEEEEEEETTEEEEEEEEECCCSGGG--HHHHHHHHHHHHHHCCBCCSCS----SSCCBCTTSSSEEEEEEEC
T ss_pred ccccCCceEEEEEEECCcEEEEEeeccCCCchH--HHHHHHHHHHHHHhcccCCCCC----ccCCccccCCceEEEeccc
Confidence 999999999999999999999999999999864 6899999999999999975321 1235678999999999999
Q ss_pred cceee-cCHHHHHHHHhcCChHHHHhhhhhHHHHhcCcccCCccccccccCCcccccCCCCCCCCccccCCCCccCcccC
Q 010619 354 NYRVA-LSYEKTRLLLEDNDWDSLLEKDQLNIERESGRAFNGFNEGRIFFAPTYKYSHNSDCYAGETVKSKKKRRTPAWC 432 (506)
Q Consensus 354 NYRI~-l~~~ev~~li~~~~~~~LL~~DQL~~e~~~g~~F~gf~Eg~I~F~PTYKy~~gsd~Yd~~~~~ss~K~R~PSWc 432 (506)
||||+ ++.++++++|++++|+.||++|||+.||++|++|.||.|++|+|||||||+.|++.||+ ++|+|+||||
T Consensus 192 NyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~g~~f~gf~E~~I~F~PTYKyd~~s~~ydt-----s~k~R~PsWc 266 (313)
T 3mtc_A 192 NYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDDWDT-----SEKCRAPAWC 266 (313)
T ss_dssp CCCBCSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSCTTCBCCCCCSCCCBCBCTTSSSBCC-----STTCCCCBCC
T ss_pred cccccCCCHHHHHHHHhcCCHHHHHHhHHHHHHHHcCCccCCcccCCcCcCCCccCcCCCccccc-----ccCEeccccc
Confidence 99996 89999999999999999999999999999999999999999999999999999999995 7899999999
Q ss_pred cceeecCCCceeeeecc-CCCccCCCcccccEEEEEechhhhc
Q 010619 433 DRILWRGNGIEQLSYIR-GESRFSDHRPVCAVFSVEVERDVRI 474 (506)
Q Consensus 433 DRIL~~~~~i~~l~Y~~-~e~~~SDHrPV~a~F~v~v~~~v~~ 474 (506)
|||||++.+++++.|.+ .++++||||||+|.|.+++. |+.
T Consensus 267 DRIL~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~~~~~--~~~ 307 (313)
T 3mtc_A 267 DRILWKGKNITQLSYQSHMALKTSDHKPVSSVFDIGVR--VVA 307 (313)
T ss_dssp EEEEEEESSEEEEEEEECTTCCSSSSCCEEEEEEEEEE--EEC
T ss_pred ceEEEecCCeEEEeeeeccCccCCCccCeEEEEEEEEE--Eee
Confidence 99999999999999987 47999999999999999998 654
No 2
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=100.00 E-value=7.9e-90 Score=701.89 Aligned_cols=293 Identities=34% Similarity=0.590 Sum_probs=246.5
Q ss_pred cceeEEEEEEEeeCCCCCCCCCCCcccccCCC------------CCCcEEEEeeEEEEecCCCceeeecCcchHHHHHHH
Q 010619 37 EIQRLRIYAATWNVGGKTPSNSLNLEDFLEVE------------CSADIYVCGFQEIVKLSAGNVLVIEDNEPAAKWLAL 104 (506)
Q Consensus 37 ~~~~~rifvgTWNV~g~~p~~~ldl~~wl~~~------------~~~DiyviGfQEiV~Lna~~vl~~ED~~p~~kW~~l 104 (506)
+.+.|+||||||||||+.|+++ |.+||.+. .+||||||||||+. . ....|+..
T Consensus 4 ~~~~i~i~vgTwNv~g~~p~~~--L~~wl~~~~~~~~~~~~~~~~~~DiyviG~QE~~-~------------~~~~W~~~ 68 (316)
T 4a9c_A 4 EPDMISVFIGTWNMGSVPPPKN--VTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENS-V------------GDREWLDL 68 (316)
T ss_dssp --CEEEEEEEEEECTTSCCCSC--CHHHHTTCSEEECCCTTGGGSCCSEEEEEEESCC-S------------CHHHHHHH
T ss_pred CCCeEEEEEEEeEcCCcCCCcc--hhHhhcccccccCcccccccCCCcEEEEeccccc-c------------chhHHHHH
Confidence 5678999999999999999875 59999852 36899999999962 1 25799999
Q ss_pred HHHHhCCCCCCCcccCCCCCCCCccCCCCCCCCCCCCCCCCCCcccccCchhhHhhhccccchhhhhccCCCCCCCchhh
Q 010619 105 IHQALNRPKNDSIYSTSESNSHTKQTNSNNNNNNSKDAKSPSSLNLFQKPSLKVLSRNLRADSTLLKACNCPIESPGRER 184 (506)
Q Consensus 105 I~~aLN~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~r~~~~~~~~~~~~~~~~~~~~ 184 (506)
|.++|+..
T Consensus 69 i~~~L~~~------------------------------------------------------------------------ 76 (316)
T 4a9c_A 69 LRGGLKEL------------------------------------------------------------------------ 76 (316)
T ss_dssp HHHHHHHH------------------------------------------------------------------------
T ss_pred HHHHhccc------------------------------------------------------------------------
Confidence 99999720
Q ss_pred hhhhhccccccccccCccCCCccccccchhhhccCCCCCCCCcCCCCCCCeEEEEeeeeeceEEEEEEeCCCCCCcCcee
Q 010619 185 RRIRKLSDRTSKLECNHESLLPQRDISSVVVELFSIPEIPASSCSHGQRSYRLIASKQMVGIFLSVWVRNDLVPHIGHLR 264 (506)
Q Consensus 185 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~s~qmvGi~L~Vfvr~~l~~~I~~v~ 264 (506)
...+|++|+++||+||+|+||||+++.++|++|+
T Consensus 77 ----------------------------------------------~~~~Y~~v~s~~L~gi~l~Vfvk~~~~~~I~~v~ 110 (316)
T 4a9c_A 77 ----------------------------------------------TDLDYRPIAMQSLWNIKVAVLVKPEHENRISHVS 110 (316)
T ss_dssp ----------------------------------------------HSCCCEEEEEEEETTEEEEEEECGGGGGGEEEEE
T ss_pred ----------------------------------------------cCCCEEEEEeeeehheeeeeEEeHHHhhhCcccc
Confidence 0136999999999999999999999999999999
Q ss_pred EeeEeeccceecCCceEEEEEEEEeceEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCccccc
Q 010619 265 FSSVGRGIMGCLGNKGCTSISMSVYNTSFCFVCCHLASGEKEGDELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDH 344 (506)
Q Consensus 265 ~~~v~tGi~G~~GNKGaVavr~~l~~ts~cFVn~HLaAg~~~~~~~rRN~D~~~Il~~~~F~~~~~~~~~~~~~~~i~dh 344 (506)
+++||||++|++||||||+|||.+++++|||||||||||+++ +.+||+||.+|++++.|+.... ...+.+.+|
T Consensus 111 ~~~v~tG~~g~~GNKGaV~ir~~~~~ts~~FVn~HLaAg~~~--~~~Rn~d~~~I~~~l~f~~~~~-----~~~d~~~~~ 183 (316)
T 4a9c_A 111 TSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEK--TARRNQNYLDILRLLSLGDRQL-----NAFDISLRF 183 (316)
T ss_dssp EEEEEEC------CEEEEEEEEEETTEEEEEEEEECCCSTTC--HHHHHHHHHHHHHHCCC------------CCTTTTS
T ss_pred cceeeeeeeEecCCCceEEEEEEECCcEEEEEEeccccCchH--HHHHHHHHHHHHHhCCCCCCCc-----CccccCCcC
Confidence 999999999999999999999999999999999999999874 7899999999999999974211 112345679
Q ss_pred ccEEEeccccceeecCHHHHHHHHhcCChHHHHhhhhhHHHHhcCcccCCccccccccCCcccccCCCC-CCCCccc-cC
Q 010619 345 DRVIWLGDLNYRVALSYEKTRLLLEDNDWDSLLEKDQLNIERESGRAFNGFNEGRIFFAPTYKYSHNSD-CYAGETV-KS 422 (506)
Q Consensus 345 D~vfw~GDLNYRI~l~~~ev~~li~~~~~~~LL~~DQL~~e~~~g~~F~gf~Eg~I~F~PTYKy~~gsd-~Yd~~~~-~s 422 (506)
|||||||||||||+++.++++++|++++|+.||++|||+.||++|++|.||.|++|+|||||||+.|++ .|+++.. .+
T Consensus 184 d~vfw~GDLNyRi~~~~~~v~~~i~~~~~~~Ll~~DQL~~e~~~g~~F~gf~E~~i~F~PTYKy~~~s~~~y~~~~~~~~ 263 (316)
T 4a9c_A 184 THLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSRDTYAWHKQKPT 263 (316)
T ss_dssp SEEEEEEECCCCBSSCHHHHHHHHHTTCCHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTCSSCBCCC-----
T ss_pred CeEEEcCCccCCcCCCHHHHHHHHhcccHHHHhccChHHHHHhcCCcccccccCCcccCCCccccCCCcccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999995 6765432 24
Q ss_pred CCCccCcccCcceeecCC---Cceeeeecc-CCCccCCCcccccEEEEEec
Q 010619 423 KKKRRTPAWCDRILWRGN---GIEQLSYIR-GESRFSDHRPVCAVFSVEVE 469 (506)
Q Consensus 423 s~K~R~PSWcDRIL~~~~---~i~~l~Y~~-~e~~~SDHrPV~a~F~v~v~ 469 (506)
++|+|+|||||||||++. .+.+++|.+ .++++||||||+|.|.|.|.
T Consensus 264 ~~k~R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v~V~ 314 (316)
T 4a9c_A 264 GVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEVGVT 314 (316)
T ss_dssp ---CCCCBCCEEEEEEECTTCCEEEEEEEECSSCCSSSSCCEEEEEEEECC
T ss_pred cccccCCcccceEEeccCCCCceEEeeecccCCcCCCCcccEEEEEEEEEE
Confidence 678899999999999975 478899986 58999999999999999986
No 3
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=100.00 E-value=8.2e-86 Score=681.06 Aligned_cols=318 Identities=32% Similarity=0.562 Sum_probs=278.4
Q ss_pred CCCCcCCCccceeEEEEEEEeeCCCCCCCCCCCcccccCC--CCCCcEEEEeeEEEEecCCCceeeecCcchHHHHHHHH
Q 010619 28 FEPSMTSVTEIQRLRIYAATWNVGGKTPSNSLNLEDFLEV--ECSADIYVCGFQEIVKLSAGNVLVIEDNEPAAKWLALI 105 (506)
Q Consensus 28 ~~~~~~~~~~~~~~rifvgTWNV~g~~p~~~ldl~~wl~~--~~~~DiyviGfQEiV~Lna~~vl~~ED~~p~~kW~~lI 105 (506)
|.....+|+..++++||||||||||+.|+ .||.+||.. ..+||||||||||||+|++++|++. |+.+...|+..|
T Consensus 12 l~~r~~e~~~~~~~~i~v~TwNv~g~~~~--~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~~-~~~~~~~w~~~i 88 (347)
T 1i9z_A 12 LRKRENEFSEHKNVKIFVASYNLNGCSAT--TKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISA-DPAKRREWESCV 88 (347)
T ss_dssp HHHTGGGTEEEEEEEEEEEEEECTTCCCC--SCCHHHHSCSSSCCCSEEEEEEECSSCCC-----CC-CHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcEEEEEeEecCCCCCc--hhHHHHhccccCCCCCEEEEEeEEeecCchhhhccc-CchhHHHHHHHH
Confidence 44556679999999999999999999984 468999986 4799999999999999999999974 888899999999
Q ss_pred HHHhCCCCCCCcccCCCCCCCCccCCCCCCCCCCCCCCCCCCcccccCchhhHhhhccccchhhhhccCCCCCCCchhhh
Q 010619 106 HQALNRPKNDSIYSTSESNSHTKQTNSNNNNNNSKDAKSPSSLNLFQKPSLKVLSRNLRADSTLLKACNCPIESPGRERR 185 (506)
Q Consensus 106 ~~aLN~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~r~~~~~~~~~~~~~~~~~~~~~ 185 (506)
.++||+..
T Consensus 89 ~~~L~~~~------------------------------------------------------------------------ 96 (347)
T 1i9z_A 89 KRLLNGKC------------------------------------------------------------------------ 96 (347)
T ss_dssp HHHHHHTC------------------------------------------------------------------------
T ss_pred HHHHhhcc------------------------------------------------------------------------
Confidence 99997310
Q ss_pred hhhhccccccccccCccCCCccccccchhhhccCCCCCCCCcCCCCCCCeEEEEeeeeeceEEEEEEeCCCCCCcCceeE
Q 010619 186 RIRKLSDRTSKLECNHESLLPQRDISSVVVELFSIPEIPASSCSHGQRSYRLIASKQMVGIFLSVWVRNDLVPHIGHLRF 265 (506)
Q Consensus 186 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~s~qmvGi~L~Vfvr~~l~~~I~~v~~ 265 (506)
.++..|++|.+.||+|++|+||+|.+++++|++|++
T Consensus 97 --------------------------------------------~~~~~Y~~v~s~~l~g~~L~Vfvr~~~~~~i~~v~~ 132 (347)
T 1i9z_A 97 --------------------------------------------TSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEG 132 (347)
T ss_dssp --------------------------------------------CSSCCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEE
T ss_pred --------------------------------------------cCCCceeEEEEeeccceEEEEEEehHhhhhccceee
Confidence 023579999999999999999999999999999999
Q ss_pred eeEeeccceecCCceEEEEEEEEeceEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcccccc
Q 010619 266 SSVGRGIMGCLGNKGCTSISMSVYNTSFCFVCCHLASGEKEGDELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHD 345 (506)
Q Consensus 266 ~~v~tGi~G~~GNKGaVavr~~l~~ts~cFVn~HLaAg~~~~~~~rRN~D~~~Il~~~~F~~~~~~~~~~~~~~~i~dhD 345 (506)
++|+||++|++||||||+|+|.+++++||||||||+||+.+ ..+||+||.+|++++.|+.. ..|.+||
T Consensus 133 ~~v~tG~~g~~gnKGav~vr~~~~~~~l~fvn~HLaa~~~~--~~~R~~d~~~I~~~l~f~~~----------~~i~~~d 200 (347)
T 1i9z_A 133 TVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTN--YDERDHDYRTIASGLRFRRG----------RSIFNHD 200 (347)
T ss_dssp EEEECCCC----CCEEEEEEEEETTEEEEEEEEECCCCSSC--HHHHHHHHHHHHHHCCCGGG----------CCTTSSS
T ss_pred eeEeccCCCccCCCceEEEEEEECCeEEEEEEecCCCCCcc--HHHHHHHHHHHHHhhccCcc----------cccccCc
Confidence 99999999999999999999999999999999999999864 56899999999999998752 2477899
Q ss_pred cEEEeccccceeecCHHHHHHHHhcCChHHHHhhhhhHHHHhcCcccCCccccccccCCcccccCCCCCCCCccccCCCC
Q 010619 346 RVIWLGDLNYRVALSYEKTRLLLEDNDWDSLLEKDQLNIERESGRAFNGFNEGRIFFAPTYKYSHNSDCYAGETVKSKKK 425 (506)
Q Consensus 346 ~vfw~GDLNYRI~l~~~ev~~li~~~~~~~LL~~DQL~~e~~~g~~F~gf~Eg~I~F~PTYKy~~gsd~Yd~~~~~ss~K 425 (506)
++||+|||||||+++.++++++|++++|+.||++|||+.++++|++|.||.|++|+|+|||||+.|++.||+ ++|
T Consensus 201 ~v~~~GDlNyRi~~~~~~v~~~i~~~~~~~Ll~~DqL~~~~~~~~~f~~f~E~~i~F~PTYK~~~~~~~yd~-----s~k 275 (347)
T 1i9z_A 201 YVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDT-----SDK 275 (347)
T ss_dssp EEEEEEECCCCBSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTSSCBCC-----STT
T ss_pred cEEEecccccccCCCHHHHHHHHhhccHHHhhcccHHHHHHhcCCcccccccCCCCCCCCcccCCCCccccc-----ccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999995 789
Q ss_pred ccCcccCcceeecCCCceeeeeccCCCccCCCcccccEEEEEechhhhccchhhhhh
Q 010619 426 RRTPAWCDRILWRGNGIEQLSYIRGESRFSDHRPVCAVFSVEVERDVRIKSSNRLRK 482 (506)
Q Consensus 426 ~R~PSWcDRIL~~~~~i~~l~Y~~~e~~~SDHrPV~a~F~v~v~~~v~~~~~~~~~~ 482 (506)
+|+|||||||||++ .++++.|.+.++++||||||+|.|.+.|+.+...++.+..++
T Consensus 276 ~R~PsWcDRIL~~~-~l~~~~Y~~~~~~~SDH~PV~a~f~~~v~~~~~~~~~~~~~~ 331 (347)
T 1i9z_A 276 HRVPAWTDRILYRG-ELVPHSYQSVPLYYSDHRPIYATYEANIVKVDREKKKILFEE 331 (347)
T ss_dssp CCCCBCCEEEEEES-SCEEEEEEECCCCSSSBCCEEEEEEEEEEEECHHHHHHHHHH
T ss_pred ccCCcccceEEEeC-CEEEEEEEecCccCCCcCCceeEEEEEEecCCHHHHHHHHHH
Confidence 99999999999998 899999998889999999999999999995544433333333
No 4
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=7e-82 Score=653.92 Aligned_cols=294 Identities=31% Similarity=0.549 Sum_probs=259.0
Q ss_pred CCCccceeEEEEEEEeeCCCCC-CCCCCCcccccCC---CCCCcEEEEeeEEEEecCCCceeeecCcchHHHHHHHHHHH
Q 010619 33 TSVTEIQRLRIYAATWNVGGKT-PSNSLNLEDFLEV---ECSADIYVCGFQEIVKLSAGNVLVIEDNEPAAKWLALIHQA 108 (506)
Q Consensus 33 ~~~~~~~~~rifvgTWNV~g~~-p~~~ldl~~wl~~---~~~~DiyviGfQEiV~Lna~~vl~~ED~~p~~kW~~lI~~a 108 (506)
.+|+..++++||||||||||.. |++ +|.+||.. +.+||||||||||+++. ...|+..|.++
T Consensus 18 ~~~~~~~~l~i~v~TwNv~g~~~~~~--~L~~~l~~~~~~~~pDI~viGlQEi~~~-------------~~~W~~~l~~~ 82 (357)
T 2xsw_A 18 ARYFPDRNVALFVATWNMQGQKELPP--SLDEFLLPAEADYAQDLYVIGVQEGCSD-------------RREWETRLQET 82 (357)
T ss_dssp HHHCTTCEEEEEEEEEECTTCSSCCS--CCHHHHSCTTCCSCCSEEEEEEESCCSC-------------HHHHHHHHHHH
T ss_pred hhcCCCCCceEEEEEEecCCCCCCcc--cHHHHhccccccCCCCEEEEEeeeccch-------------HHHHHHHHHHH
Confidence 4589999999999999999864 444 57899974 46899999999998531 36899888877
Q ss_pred hCCCCCCCcccCCCCCCCCccCCCCCCCCCCCCCCCCCCcccccCchhhHhhhccccchhhhhccCCCCCCCchhhhhhh
Q 010619 109 LNRPKNDSIYSTSESNSHTKQTNSNNNNNNSKDAKSPSSLNLFQKPSLKVLSRNLRADSTLLKACNCPIESPGRERRRIR 188 (506)
Q Consensus 109 LN~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~r~~~~~~~~~~~~~~~~~~~~~r~~ 188 (506)
|+
T Consensus 83 L~------------------------------------------------------------------------------ 84 (357)
T 2xsw_A 83 LG------------------------------------------------------------------------------ 84 (357)
T ss_dssp HC------------------------------------------------------------------------------
T ss_pred hC------------------------------------------------------------------------------
Confidence 73
Q ss_pred hccccccccccCccCCCccccccchhhhccCCCCCCCCcCCCCCCCeEEEEeeeeeceEEEEEEeCCCCCCcCceeEeeE
Q 010619 189 KLSDRTSKLECNHESLLPQRDISSVVVELFSIPEIPASSCSHGQRSYRLIASKQMVGIFLSVWVRNDLVPHIGHLRFSSV 268 (506)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~s~qmvGi~L~Vfvr~~l~~~I~~v~~~~v 268 (506)
..|+++.+.+|+|++|+||+|.+++++|++|++++|
T Consensus 85 --------------------------------------------~~Y~~v~s~~l~g~~l~Vfvr~~~~~~i~~v~~~~v 120 (357)
T 2xsw_A 85 --------------------------------------------PHYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTV 120 (357)
T ss_dssp --------------------------------------------TTEEEEEEEEETTEEEEEEEEGGGGGGBBCCEEEEE
T ss_pred --------------------------------------------CcccchhhhhhhhEEEEEEEchHHhhcCceeEeccc
Confidence 148999999999999999999999999999999999
Q ss_pred eeccceecCCceEEEEEEEEeceEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCcccCCCCC--CCCCCccccccc
Q 010619 269 GRGIMGCLGNKGCTSISMSVYNTSFCFVCCHLASGEKEGDELKRNADVAEILKSTQFPKICKGPNP--RTAPERIIDHDR 346 (506)
Q Consensus 269 ~tGi~G~~GNKGaVavr~~l~~ts~cFVn~HLaAg~~~~~~~rRN~D~~~Il~~~~F~~~~~~~~~--~~~~~~i~dhD~ 346 (506)
+||++|++||||||+|+|.+++|+||||||||+||+++ ..+||+||.+|++.+.|++....... ....+.+.+||+
T Consensus 121 ~tG~~g~~gNKGav~vr~~~~~t~~~Fvn~HLaa~~~~--~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~ 198 (357)
T 2xsw_A 121 TTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSGDGK--VAERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDE 198 (357)
T ss_dssp EEEEEETTEEEEEEEEEEEETTEEEEEEEEECCCSTTC--HHHHHHHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSE
T ss_pred ccccccccccccEEEEEEEECCeEEEEEEEccCCCCch--HHHHHHHHHHHHHHhcccccccccccccccccccccccce
Confidence 99999999999999999999999999999999999864 67999999999999999764221000 011234568999
Q ss_pred EEEeccccceeecCHHHHHHHHh---cCChHHHHhhhhhHHHHhcCcccCCccccccccCCcccccCCCCCCCCccccCC
Q 010619 347 VIWLGDLNYRVALSYEKTRLLLE---DNDWDSLLEKDQLNIERESGRAFNGFNEGRIFFAPTYKYSHNSDCYAGETVKSK 423 (506)
Q Consensus 347 vfw~GDLNYRI~l~~~ev~~li~---~~~~~~LL~~DQL~~e~~~g~~F~gf~Eg~I~F~PTYKy~~gsd~Yd~~~~~ss 423 (506)
|||+|||||||++++++++++|+ .++|+.||++|||+.++++|++|.||.|++|+|||||||+.|++.||+ +
T Consensus 199 vfw~GDlNyRi~~~~~~v~~~i~~~~~~~~~~Ll~~DQL~~~~~~g~~F~gf~E~~I~F~PTYKy~~~t~~Ydt-----s 273 (357)
T 2xsw_A 199 VFWFGDFNFRLSGGRTVVDALLCQGLVVDVPALLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFDIGKDTYDS-----T 273 (357)
T ss_dssp EEEEEECCCCBSSCHHHHHHHHC---CCCHHHHHTTBHHHHHHHHTSSSTTCBCCCCCSCCCBCBCTTSSSBCC-----S
T ss_pred EEEecccCcccccchHHHHHHHhhcchhhHHHHHhcChhHHHHhccccccCccccCCCCCCCccccCCCccccc-----c
Confidence 99999999999999999999997 579999999999999999999999999999999999999999999995 7
Q ss_pred CCccCcccCcceeecCC---Cceeeeecc-CCCccCCCcccccEEEEEech
Q 010619 424 KKRRTPAWCDRILWRGN---GIEQLSYIR-GESRFSDHRPVCAVFSVEVER 470 (506)
Q Consensus 424 ~K~R~PSWcDRIL~~~~---~i~~l~Y~~-~e~~~SDHrPV~a~F~v~v~~ 470 (506)
+|+|+|||||||||++. .++++.|.+ .++++||||||+|.|.+.+++
T Consensus 274 ~k~R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v~v~~ 324 (357)
T 2xsw_A 274 SKQRTPSYTDRVLYRSRHKGDICPVSYSSCPGIKTSDHRPVYGLFRVKVRP 324 (357)
T ss_dssp TTCCCCBCCEEEEEEESSTTSEEEEEEEECTTCCSSSSCCEEEEEEEECCC
T ss_pred CCCCCCcccceEEEecCCCCceEEEEeEecccccCCCcCCceeEEEEEEec
Confidence 89999999999999964 588999988 589999999999999999984
No 5
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=100.00 E-value=1.2e-66 Score=521.91 Aligned_cols=271 Identities=23% Similarity=0.414 Sum_probs=235.0
Q ss_pred ceeEEEEEEEeeCCCCCCCCCCCcccccCC--CCCCcEEEEeeEEEEecCCCceeeecCcchHHHHHHHHHHHhCCCCCC
Q 010619 38 IQRLRIYAATWNVGGKTPSNSLNLEDFLEV--ECSADIYVCGFQEIVKLSAGNVLVIEDNEPAAKWLALIHQALNRPKND 115 (506)
Q Consensus 38 ~~~~rifvgTWNV~g~~p~~~ldl~~wl~~--~~~~DiyviGfQEiV~Lna~~vl~~ED~~p~~kW~~lI~~aLN~~~~~ 115 (506)
.++++|+|+||||++..|+++ |.+|+.. +..||||||||||++ +++++. .....|...|.++|+.
T Consensus 4 ~~~~~i~V~T~Nv~~~~~~~~--l~~wl~~~~~~~pDI~viglQEv~-~~~~~~------~~~~~w~~~l~~~L~~---- 70 (282)
T 2imq_X 4 PAQLSVHTVSWNSGHERAPTN--LEELLGLNSGETPDVIAVAVQGFG-FQTDKP------QQGPACVKNFQSLLTS---- 70 (282)
T ss_dssp CSEEEEEEEEEEEETCCCCSC--CHHHHTCTTSCCCSEEEEEEEESC-TTTCTT------CCHHHHHHHHHHHHHH----
T ss_pred CCCcEEEEEEEeCCCCcCchh--HHHHhcccccCCCCEEEEEeeeec-cccccc------hhhHHHHHHHHHhcCC----
Confidence 467999999999988877654 6899974 579999999999975 665441 2356888888877741
Q ss_pred CcccCCCCCCCCccCCCCCCCCCCCCCCCCCCcccccCchhhHhhhccccchhhhhccCCCCCCCchhhhhhhhcccccc
Q 010619 116 SIYSTSESNSHTKQTNSNNNNNNSKDAKSPSSLNLFQKPSLKVLSRNLRADSTLLKACNCPIESPGRERRRIRKLSDRTS 195 (506)
Q Consensus 116 ~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~r~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 195 (506)
T Consensus 71 -------------------------------------------------------------------------------- 70 (282)
T 2imq_X 71 -------------------------------------------------------------------------------- 70 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccCCCccccccchhhhccCCCCCCCCcCCCCCCCeEEEEe--eeeeceEEEEEEeCCCCCCcCceeEeeEeeccc
Q 010619 196 KLECNHESLLPQRDISSVVVELFSIPEIPASSCSHGQRSYRLIAS--KQMVGIFLSVWVRNDLVPHIGHLRFSSVGRGIM 273 (506)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~s--~qmvGi~L~Vfvr~~l~~~I~~v~~~~v~tGi~ 273 (506)
..|++|.+ .+|+|++|+||+|.++.+.|+++.+ +|++
T Consensus 71 -------------------------------------~~Y~~v~~~~~~~~G~~l~vf~k~~~~~~i~~~~~----~~~~ 109 (282)
T 2imq_X 71 -------------------------------------KGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETI----IVTV 109 (282)
T ss_dssp -------------------------------------TTEEEEEEEECSSEEEEEEEEGGGCCTTTCCCEEE----EEEC
T ss_pred -------------------------------------CceEEEEeccCceeEEEEEEEEccccCccceeeee----cccc
Confidence 24788888 8999999999999999998888755 5677
Q ss_pred eecCCceEEEEEEEEeceEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcccccccEEEeccc
Q 010619 274 GCLGNKGCTSISMSVYNTSFCFVCCHLASGEKEGDELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHDRVIWLGDL 353 (506)
Q Consensus 274 G~~GNKGaVavr~~l~~ts~cFVn~HLaAg~~~~~~~rRN~D~~~Il~~~~F~~~~~~~~~~~~~~~i~dhD~vfw~GDL 353 (506)
|.+||||||+++|.+++++||||||||+|++.+ ..+|++|+..|++++.+ +.++|++||+|||
T Consensus 110 g~~g~kGav~~r~~~~~~~~~fvn~HL~~~~~~--~~~R~~~~~~I~~~~~~---------------~~~~~~vi~~GDf 172 (282)
T 2imq_X 110 DDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVT--STNTKYAYDTRLDYSKK---------------DDPSDFLFWIGDL 172 (282)
T ss_dssp STTSCSEEEEEEEEETTEEEEEEEEECCTTCCC--TTSSSSSCCGGGCTTSS---------------SSCCSEEEEEEEC
T ss_pred ccccCCceEEEEEEECCEEEEEEEECCCCCCch--HHHHHHHHHHHHHhhhc---------------cCccceEEEeccc
Confidence 889999999999999999999999999999653 45799999988765432 3467899999999
Q ss_pred cceeecCHHHHHHHHhcCChHHHHhhhhhHHHHhcCcccCCccccccccCCcccccCCCCCCCCccccCCCCccCcccCc
Q 010619 354 NYRVALSYEKTRLLLEDNDWDSLLEKDQLNIERESGRAFNGFNEGRIFFAPTYKYSHNSDCYAGETVKSKKKRRTPAWCD 433 (506)
Q Consensus 354 NYRI~l~~~ev~~li~~~~~~~LL~~DQL~~e~~~g~~F~gf~Eg~I~F~PTYKy~~gsd~Yd~~~~~ss~K~R~PSWcD 433 (506)
|||++++.++++++|++++|..|+++|||..+++ |.+|.||.|++|+|+|||||+.+++.|++ +|+|||||
T Consensus 173 N~r~~~~~~~~~~~i~~~~~~~l~~~DqL~~~~~-~~~f~~f~e~~i~f~PTYk~~~~~~~y~~--------~R~Psw~D 243 (282)
T 2imq_X 173 NVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKE-QKLFDGWTEPQVTFKPTYKFKPNTDEYDL--------SATPSWTD 243 (282)
T ss_dssp SCCBCSCHHHHHHHHHTTCHHHHHTTBTHHHHHH-TTSSTTCBCCCCCSCCCBCBCTTSSCBCT--------TSCCBCCE
T ss_pred ccccCCCHHHHHHHHhhccHHHHhhhhHHHHhhc-cccccccccCCcCCCCCccccCCCccccc--------cCCccccc
Confidence 9999999999999999999999999999999999 99999999999999999999999999984 59999999
Q ss_pred ceeecCC---CceeeeeccC-CCccCCCcccccEEEEEe
Q 010619 434 RILWRGN---GIEQLSYIRG-ESRFSDHRPVCAVFSVEV 468 (506)
Q Consensus 434 RIL~~~~---~i~~l~Y~~~-e~~~SDHrPV~a~F~v~v 468 (506)
||||++. .++++.|.+. ++.+||||||+|.|.+++
T Consensus 244 rIl~~~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~~~~ 282 (282)
T 2imq_X 244 RALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVTL 282 (282)
T ss_dssp EEEEECSSSCCEEEEEEEECTTCCSSSSCCEEEEEEEEC
T ss_pred eEEEecCCCCceEeeEecCCCCCCCCCcCCeEEEEEEEC
Confidence 9999963 6889999886 789999999999999864
No 6
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.31 E-value=5.5e-11 Score=111.42 Aligned_cols=66 Identities=24% Similarity=0.361 Sum_probs=47.8
Q ss_pred eecCCceEEEEEEEEeceEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcccccccEEEeccc
Q 010619 274 GCLGNKGCTSISMSVYNTSFCFVCCHLASGEKEGDELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHDRVIWLGDL 353 (506)
Q Consensus 274 G~~GNKGaVavr~~l~~ts~cFVn~HLaAg~~~~~~~rRN~D~~~Il~~~~F~~~~~~~~~~~~~~~i~dhD~vfw~GDL 353 (506)
+....++.+.+.+.+.+..|.++|+||.++... ...|...+..|++.+.- ......+|++|||
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~--~~~~~~q~~~~~~~l~~---------------~~~~~pvIl~GDf 159 (256)
T 4gz1_A 97 NTKMMRNLLCVNVSLGGNEFCLMTSHLESTREH--SAERIRQLKTVLGKMQE---------------APDSTTVIFAGDT 159 (256)
T ss_dssp TCSSCCEEEEEEEEETTEEEEEEECBCCCSGGG--HHHHHHHHHHHHHHHHH---------------SCTTSEEEEEEEC
T ss_pred cccccceEEEEEEEeCCEEEEEEeecccccccc--hhhhhHHHHHHhhhhhh---------------ccCcceEEEeCcc
Confidence 334567888899999999999999999987543 34566777777765420 0123468999999
Q ss_pred cce
Q 010619 354 NYR 356 (506)
Q Consensus 354 NYR 356 (506)
|..
T Consensus 160 N~~ 162 (256)
T 4gz1_A 160 NLR 162 (256)
T ss_dssp CCC
T ss_pred CCC
Confidence 964
No 7
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.23 E-value=1.4e-10 Score=110.40 Aligned_cols=62 Identities=23% Similarity=0.377 Sum_probs=47.7
Q ss_pred cCCceEEEEEEEEeceEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcccccccEEEeccccc
Q 010619 276 LGNKGCTSISMSVYNTSFCFVCCHLASGEKEGDELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHDRVIWLGDLNY 355 (506)
Q Consensus 276 ~GNKGaVavr~~l~~ts~cFVn~HLaAg~~~~~~~rRN~D~~~Il~~~~F~~~~~~~~~~~~~~~i~dhD~vfw~GDLNY 355 (506)
+..+|++.+++.+.+..|.++|+||.+.... ...|..++..|++.+. ....+|++||||-
T Consensus 120 ~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~--~~~r~~q~~~l~~~~~------------------~~~~~il~GDfN~ 179 (266)
T 3teb_A 120 ISARRIVSITINYEGQDIEFYSCHMNLPNCE--TEDMGKNIQTILNRTQ------------------NSNLKILMGDFNT 179 (266)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEECCCTTCT--TCCHHHHHHHHHTSSC------------------SCCEEEEEEECCC
T ss_pred cccceEEEEEEEeCCeEEEEEEecCCCccCC--hHHHHHHHHHHHHHHh------------------cCCcEEEEeECCC
Confidence 4579999999999999999999999987432 2347777887765431 1467999999998
Q ss_pred ee
Q 010619 356 RV 357 (506)
Q Consensus 356 RI 357 (506)
.-
T Consensus 180 ~~ 181 (266)
T 3teb_A 180 DA 181 (266)
T ss_dssp CT
T ss_pred CC
Confidence 64
No 8
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.19 E-value=8.4e-11 Score=110.41 Aligned_cols=67 Identities=18% Similarity=0.092 Sum_probs=44.6
Q ss_pred cCCceEEEEEEEEeceEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcccccccEEEeccccc
Q 010619 276 LGNKGCTSISMSVYNTSFCFVCCHLASGEKEGDELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHDRVIWLGDLNY 355 (506)
Q Consensus 276 ~GNKGaVavr~~l~~ts~cFVn~HLaAg~~~~~~~rRN~D~~~Il~~~~F~~~~~~~~~~~~~~~i~dhD~vfw~GDLNY 355 (506)
.+.++.+.+.+.+.+..|.++|+||.+.... ...|...+..++..+.... .......+|++||||-
T Consensus 103 ~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~--~~~~~~q~~~~~~~~~~~~------------~~~~~~~vIl~GDfN~ 168 (256)
T 4fva_A 103 GMYRTLQILEGSIGGLKVFLLNTHLESTREH--RPQRCAQFGFCMDKVREII------------AQNPGALVFFGGDLNL 168 (256)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEEECCCSGGG--HHHHHHHHHHHHHHHHHHH------------HHSTTCEEEEEEECCC
T ss_pred cccceeEEEEEEeCCeEEEEEEecCCCCCcc--hHHHHHHHHHHHHHhhhhh------------hccCCCcEEEeccCCC
Confidence 3567788889999999999999999987542 3345555555554321100 0012357999999996
Q ss_pred e
Q 010619 356 R 356 (506)
Q Consensus 356 R 356 (506)
+
T Consensus 169 ~ 169 (256)
T 4fva_A 169 R 169 (256)
T ss_dssp C
T ss_pred C
Confidence 4
No 9
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.18 E-value=3.9e-10 Score=103.67 Aligned_cols=61 Identities=16% Similarity=0.255 Sum_probs=44.1
Q ss_pred CceEEEEEEEEeceEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcccccccEEEeccccc
Q 010619 278 NKGCTSISMSVYNTSFCFVCCHLASGEKEGDELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHDRVIWLGDLNY 355 (506)
Q Consensus 278 NKGaVavr~~l~~ts~cFVn~HLaAg~~~~~~~rRN~D~~~Il~~~~F~~~~~~~~~~~~~~~i~dhD~vfw~GDLNY 355 (506)
..+.+.+.+.+.+..|.++++||.+... ....|...+.+|++.+.= ......+|++||||-
T Consensus 95 ~~~~~~~~~~~~~~~~~v~~~hl~~~~~--~~~~r~~q~~~~~~~l~~---------------~~~~~pvIl~GDfN~ 155 (250)
T 4f1h_A 95 MRNLLIAQVTFSGQKLYLMTSHLESCKN--QSQERTKQLRVVLQKIKE---------------APEDAIVIFAGDTNL 155 (250)
T ss_dssp CCEEEEEEEEETTEEEEEEECBCCCSGG--GHHHHHHHHHHHHHHHHH---------------SCTTEEEEEEEECCC
T ss_pred cceEEEEEEecCCcEEEEeccccccccc--cHHHHHHHHHHHHHHHHh---------------cCCCCCEEEEEecCC
Confidence 4566778888899999999999998754 244577778778765420 012346899999995
No 10
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.01 E-value=1.3e-09 Score=112.14 Aligned_cols=65 Identities=18% Similarity=0.135 Sum_probs=44.8
Q ss_pred CceEEEEEEEEeceEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcccccccEEEeccccce
Q 010619 278 NKGCTSISMSVYNTSFCFVCCHLASGEKEGDELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHDRVIWLGDLNYR 356 (506)
Q Consensus 278 NKGaVavr~~l~~ts~cFVn~HLaAg~~~~~~~rRN~D~~~Il~~~~F~~~~~~~~~~~~~~~i~dhD~vfw~GDLNYR 356 (506)
..+++.+.+.+.+..|+++|+||.++.. ...+|...+..++..+.-.. .......+|++||||-+
T Consensus 211 ~r~~l~~~i~~~g~~l~v~ntHL~s~~~--~~~~R~~Q~~~l~~~~~~~~------------~~~~~~pvIl~GDFN~~ 275 (362)
T 4gew_A 211 YRTLQILEGSIGGLKVFLLNTHLESTRE--HRPQRCAQFGFCMDKVREII------------AQNPGALVFFGGDLNLR 275 (362)
T ss_dssp CCEEEEEEEEETTEEEEEEEEECCCSGG--GHHHHHHHHHHHHHHHHHHH------------HHCTTCEEEEEEECCCC
T ss_pred cceEEEEEEEECCEEEEEEEecCCcccc--chhHHHHHHHHHHHHhHhhh------------hcCCCCCeEEeecCCCC
Confidence 4678888999999999999999988653 24467777766665432100 00123479999999954
No 11
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=98.84 E-value=3.1e-08 Score=95.15 Aligned_cols=61 Identities=18% Similarity=0.183 Sum_probs=42.9
Q ss_pred cCCceEEEEEEEE--eceEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcccccccEEEeccc
Q 010619 276 LGNKGCTSISMSV--YNTSFCFVCCHLASGEKEGDELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHDRVIWLGDL 353 (506)
Q Consensus 276 ~GNKGaVavr~~l--~~ts~cFVn~HLaAg~~~~~~~rRN~D~~~Il~~~~F~~~~~~~~~~~~~~~i~dhD~vfw~GDL 353 (506)
..+++++.+.+.. .+..|+++|+||.+.. ...|.+....|++.+. .+.....+|++|||
T Consensus 113 ~~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~l~---------------~~~~~~pvIl~GDf 173 (267)
T 3g6s_A 113 VCVRIATWAKFKDKATGKIFMAVNTHFDHVG----EEARRQSALLIIRKIK---------------EIVGERPAVVTGDF 173 (267)
T ss_dssp SSCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHH---------------HHTTTSCEEEEEEC
T ss_pred cCcceEEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHHHH---------------HhcCCCCEEEEeEC
Confidence 3477888888885 5789999999998753 3457666666665442 01113468999999
Q ss_pred cc
Q 010619 354 NY 355 (506)
Q Consensus 354 NY 355 (506)
|-
T Consensus 174 N~ 175 (267)
T 3g6s_A 174 NV 175 (267)
T ss_dssp SS
T ss_pred CC
Confidence 95
No 12
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=9.9e-08 Score=94.07 Aligned_cols=62 Identities=15% Similarity=0.075 Sum_probs=42.4
Q ss_pred CCceEEEEEEE--EeceEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcccccccEEEecccc
Q 010619 277 GNKGCTSISMS--VYNTSFCFVCCHLASGEKEGDELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHDRVIWLGDLN 354 (506)
Q Consensus 277 GNKGaVavr~~--l~~ts~cFVn~HLaAg~~~~~~~rRN~D~~~Il~~~~F~~~~~~~~~~~~~~~i~dhD~vfw~GDLN 354 (506)
-+++++.+.|. ..+..|+++|+||.+.. ...|.+....|++.+.- .. . .....+|++||||
T Consensus 118 ~~R~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~i~~--~~---~--------~~~~pvIl~GDfN 180 (298)
T 3mpr_A 118 LPRICSWGHFKCKDTGFEFLFFNLHMDHIG----KKARVESAFLVQEKMKE--LG---R--------GKNLPAILTGDFN 180 (298)
T ss_dssp SCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHHH--TT---T--------TSCCCEEEEEECS
T ss_pred cCceeEEEEEEEcCCCCEEEEEEecCCCCC----HHHHHHHHHHHHHHHHH--Hh---c--------CCCCcEEEEEeCC
Confidence 46788888888 46789999999998532 34577777777655420 00 0 0134689999999
Q ss_pred c
Q 010619 355 Y 355 (506)
Q Consensus 355 Y 355 (506)
-
T Consensus 181 ~ 181 (298)
T 3mpr_A 181 V 181 (298)
T ss_dssp S
T ss_pred C
Confidence 4
No 13
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=98.41 E-value=1.1e-06 Score=85.62 Aligned_cols=70 Identities=19% Similarity=0.237 Sum_probs=49.1
Q ss_pred cCCceEEEEEEEEeceEEEEEeecCCCCCCC----ccHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcccccccEEEec
Q 010619 276 LGNKGCTSISMSVYNTSFCFVCCHLASGEKE----GDELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHDRVIWLG 351 (506)
Q Consensus 276 ~GNKGaVavr~~l~~ts~cFVn~HLaAg~~~----~~~~rRN~D~~~Il~~~~F~~~~~~~~~~~~~~~i~dhD~vfw~G 351 (506)
..++|++.+.+.+.+..|.++|+||.++... .....|...+..|.+.+.=. .+.....+|++|
T Consensus 128 ~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~-------------~~~~~~pvIl~G 194 (301)
T 1zwx_A 128 LSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKK-------------NIPKDEIIFIGG 194 (301)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHH-------------TCCTTSEEEEEE
T ss_pred ccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHh-------------CCCCCCeEEEEe
Confidence 4589999999999999999999999987432 12345777777776543200 011235799999
Q ss_pred cccceee
Q 010619 352 DLNYRVA 358 (506)
Q Consensus 352 DLNYRI~ 358 (506)
|||-.-.
T Consensus 195 DfN~~~~ 201 (301)
T 1zwx_A 195 DLNVNYG 201 (301)
T ss_dssp ECCCCTT
T ss_pred eCCCCCC
Confidence 9997543
No 14
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=98.28 E-value=1.8e-06 Score=86.40 Aligned_cols=69 Identities=22% Similarity=0.202 Sum_probs=50.0
Q ss_pred cCCceEEEEEEEEeceEEEEEeecCCCCCCC----ccHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcccccccEEEec
Q 010619 276 LGNKGCTSISMSVYNTSFCFVCCHLASGEKE----GDELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHDRVIWLG 351 (506)
Q Consensus 276 ~GNKGaVavr~~l~~ts~cFVn~HLaAg~~~----~~~~rRN~D~~~Il~~~~F~~~~~~~~~~~~~~~i~dhD~vfw~G 351 (506)
..+||.+.+.+.+.+..|.++|+||.+.... .....|...+..|.+.+.-. .+.....||++|
T Consensus 147 ~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~-------------~~~~~~pvIl~G 213 (317)
T 3i41_A 147 DSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKK-------------NIPKDETVYIGG 213 (317)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHH-------------TCCTTSCEEEEE
T ss_pred ccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHh-------------ccCCCCeEEEEe
Confidence 5789999999999999999999999986421 12467888888776644200 011235799999
Q ss_pred ccccee
Q 010619 352 DLNYRV 357 (506)
Q Consensus 352 DLNYRI 357 (506)
|||-.-
T Consensus 214 DfN~~~ 219 (317)
T 3i41_A 214 DLNVNK 219 (317)
T ss_dssp ECCCCT
T ss_pred ECCCCC
Confidence 999654
No 15
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=98.27 E-value=9.1e-06 Score=77.24 Aligned_cols=61 Identities=21% Similarity=0.148 Sum_probs=44.2
Q ss_pred cCCceEEEEEEEEe--ceEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcccccccEEEeccc
Q 010619 276 LGNKGCTSISMSVY--NTSFCFVCCHLASGEKEGDELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHDRVIWLGDL 353 (506)
Q Consensus 276 ~GNKGaVavr~~l~--~ts~cFVn~HLaAg~~~~~~~rRN~D~~~Il~~~~F~~~~~~~~~~~~~~~i~dhD~vfw~GDL 353 (506)
...++++.+.+... +..|.++|+||.+.. ...|...+..|++.+.- .+.. +.+|++|||
T Consensus 107 ~~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~r~~q~~~l~~~i~~--------------~~~~-~pvil~GDf 167 (257)
T 3l1w_A 107 GCPRIALWGLFKETTQNTPFLVINVHLDHIS----AHARLAGMTVILEELHD--------------KIAQ-YPTLLMGDF 167 (257)
T ss_dssp SSCCEEEEEEEEETTCSSCEEEEEEECCSSC----HHHHHHHHHHHHHHTHH--------------HHHH-SCEEEEEEC
T ss_pred cccceeEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHHHHH--------------HcCC-CCEEEEeeC
Confidence 45788899999874 689999999998863 34677778877765420 0111 279999999
Q ss_pred cc
Q 010619 354 NY 355 (506)
Q Consensus 354 NY 355 (506)
|-
T Consensus 168 N~ 169 (257)
T 3l1w_A 168 NA 169 (257)
T ss_dssp CC
T ss_pred CC
Confidence 95
No 16
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=98.22 E-value=5.4e-06 Score=78.68 Aligned_cols=67 Identities=9% Similarity=0.098 Sum_probs=44.9
Q ss_pred CCceEEEEEEEEeceEEEEEeecCCCCCCCc---cHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcccccccEEEeccc
Q 010619 277 GNKGCTSISMSVYNTSFCFVCCHLASGEKEG---DELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHDRVIWLGDL 353 (506)
Q Consensus 277 GNKGaVavr~~l~~ts~cFVn~HLaAg~~~~---~~~rRN~D~~~Il~~~~F~~~~~~~~~~~~~~~i~dhD~vfw~GDL 353 (506)
.+++++.+++.+.+..|+++|+||.++.... ....|.+.+..|.+.+.- . ......+|++|||
T Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~--~------------~~~~~~~Il~GDF 152 (268)
T 1ako_A 87 AQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLET--E------------LKRDNPVLIMGDM 152 (268)
T ss_dssp HHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHH--H------------CCTTSCEEEEEEC
T ss_pred cCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHHH--h------------hhCCCCEEEEeEC
Confidence 4678999999998889999999999875321 123455555555543320 0 0123579999999
Q ss_pred ccee
Q 010619 354 NYRV 357 (506)
Q Consensus 354 NYRI 357 (506)
|-..
T Consensus 153 N~~~ 156 (268)
T 1ako_A 153 NISP 156 (268)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9654
No 17
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=98.16 E-value=1.2e-05 Score=78.18 Aligned_cols=69 Identities=20% Similarity=0.240 Sum_probs=47.5
Q ss_pred cCCceEEEEEEEEeceEEEEEeecCCCCCCC----ccHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcccccccEEEec
Q 010619 276 LGNKGCTSISMSVYNTSFCFVCCHLASGEKE----GDELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHDRVIWLG 351 (506)
Q Consensus 276 ~GNKGaVavr~~l~~ts~cFVn~HLaAg~~~----~~~~rRN~D~~~Il~~~~F~~~~~~~~~~~~~~~i~dhD~vfw~G 351 (506)
..++|++.+.+.+.+..|.++|+||.+.... .....|...+..|.+.+.-. .+.....+|++|
T Consensus 128 ~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~-------------~~~~~~pvil~G 194 (306)
T 2ddr_A 128 LSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNK-------------NIPNNEYVLIGG 194 (306)
T ss_dssp CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHH-------------TCCTTSCEEEEE
T ss_pred hcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh-------------cCCCCCEEEEEe
Confidence 3578999999999999999999999987421 12456777777776543200 001134799999
Q ss_pred ccccee
Q 010619 352 DLNYRV 357 (506)
Q Consensus 352 DLNYRI 357 (506)
|||-.-
T Consensus 195 DfN~~~ 200 (306)
T 2ddr_A 195 DMNVNK 200 (306)
T ss_dssp ECCCCC
T ss_pred eCCCCc
Confidence 999755
No 18
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=97.40 E-value=0.0016 Score=60.25 Aligned_cols=54 Identities=11% Similarity=0.181 Sum_probs=35.6
Q ss_pred EEEEEEEEeceEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcccccccEEEecccccee
Q 010619 281 CTSISMSVYNTSFCFVCCHLASGEKEGDELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHDRVIWLGDLNYRV 357 (506)
Q Consensus 281 aVavr~~l~~ts~cFVn~HLaAg~~~~~~~rRN~D~~~Il~~~~F~~~~~~~~~~~~~~~i~dhD~vfw~GDLNYRI 357 (506)
.+.+.+.+.+..+.++|+|++++.. .+. +.++++.+. . . ....+|++||||-..
T Consensus 97 ~i~~~~~~~~~~~~v~~~y~p~~~~----~~~---~~~l~~~l~--~---------~-----~~~~~Il~GDFN~~~ 150 (238)
T 1vyb_A 97 YIMVKGSIQQEELTILNIYAPNTGA----PRF---IKQVLSDLQ--R---------D-----LDSHTLIMGDFNTPL 150 (238)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSSH----HHH---HHHHHHHTT--T---------T-----CCTTEEEEEECSSCS
T ss_pred EEEEEEEeCCCcEEEEEEecCCCCc----HHH---HHHHHHHHH--h---------c-----cCCCEEEEccCCCCC
Confidence 5677777888999999999988642 121 333444432 0 0 125699999999743
No 19
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=97.23 E-value=0.00096 Score=62.55 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=30.4
Q ss_pred EEEEEeecCCCCCCCcc--HHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcccccccEEEeccccceee
Q 010619 292 SFCFVCCHLASGEKEGD--ELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHDRVIWLGDLNYRVA 358 (506)
Q Consensus 292 s~cFVn~HLaAg~~~~~--~~rRN~D~~~Il~~~~F~~~~~~~~~~~~~~~i~dhD~vfw~GDLNYRI~ 358 (506)
.|.++|+|++++..... ...|.+.+..|.+.+. . .+.....+|++||||-...
T Consensus 98 ~~~v~~~h~~~~~~~~~~~~~~r~~~~~~l~~~~~--~------------~~~~~~~~il~GDFN~~~~ 152 (256)
T 2jc4_A 98 GVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVR--D------------EMTRHGKLVLLGDFNIAPA 152 (256)
T ss_dssp TEEEEEEECCCCCSTTSHHHHHHHHHHHHHHHHHH--H------------HHTTCSSEEEEEECCCCCS
T ss_pred CEEEEEEEecCCCCCCcHhHHHHHHHHHHHHHHHH--H------------HhcCCCCEEEEeECCCCCc
Confidence 69999999998754221 2234444444433221 0 0012356999999997543
No 20
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=97.04 E-value=0.0038 Score=58.99 Aligned_cols=58 Identities=10% Similarity=0.147 Sum_probs=40.7
Q ss_pred CCceEEEEEEEEeceEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcccccccEEEeccccce
Q 010619 277 GNKGCTSISMSVYNTSFCFVCCHLASGEKEGDELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHDRVIWLGDLNYR 356 (506)
Q Consensus 277 GNKGaVavr~~l~~ts~cFVn~HLaAg~~~~~~~rRN~D~~~Il~~~~F~~~~~~~~~~~~~~~i~dhD~vfw~GDLNYR 356 (506)
-..|.+.+.+.+.+..|.++|+|++.+.. ...+.+.+.++++.+ ....+|++||||=.
T Consensus 101 ~~~~~~~~~i~~~~~~~~v~~vy~p~~~~---~~~~~~~l~~~~~~~-------------------~~~~~Ii~GDfN~~ 158 (245)
T 1wdu_A 101 TTNNIVVVGIRTRAWEITLVSYYFEPDKP---IESYLEQIKRVERKM-------------------GPKRLIFGGDANAK 158 (245)
T ss_dssp CCSSEEEEEEECSSCEEEEEEEECCTTSC---SHHHHHHHHHHHHTT-------------------CSSSEEEEEECCCC
T ss_pred ccCCEEEEEEEcCCCcEEEEEEEeCCCCC---HHHHHHHHHHHHHHh-------------------CCCcEEEEeccccC
Confidence 35677888888888899999999998753 223444555555422 12468999999954
No 21
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=96.86 E-value=0.0028 Score=60.94 Aligned_cols=35 Identities=20% Similarity=0.158 Sum_probs=22.4
Q ss_pred cCcceeecCCCce-eeeec-cCCCccCCCcccccEEE
Q 010619 431 WCDRILWRGNGIE-QLSYI-RGESRFSDHRPVCAVFS 465 (506)
Q Consensus 431 WcDRIL~~~~~i~-~l~Y~-~~e~~~SDHrPV~a~F~ 465 (506)
--|+||....-.. ...+. ..+...|||.||.+.|.
T Consensus 248 rID~i~~s~~~~~~v~~~~v~~~~~~SDH~pv~~~l~ 284 (285)
T 2o3h_A 248 RLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLA 284 (285)
T ss_dssp CCEEEEECGGGGGGEEEEEECTTCCSSSBCCEEEEEC
T ss_pred EEEEEEECHHHHhhhhheEeeccCCCCCeecEEEEec
Confidence 3799998754211 22222 12456899999999875
No 22
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.50 E-value=0.00065 Score=75.75 Aligned_cols=63 Identities=19% Similarity=0.135 Sum_probs=0.0
Q ss_pred eceEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcccccccEEEeccccce
Q 010619 289 YNTSFCFVCCHLASGEKEGDELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHDRVIWLGDLNYR 356 (506)
Q Consensus 289 ~~ts~cFVn~HLaAg~~~~~~~rRN~D~~~Il~~~~F~~~~~~~~~~~~~~~i~dhD~vfw~GDLNYR 356 (506)
.+..|+++|+||.++.... ..|......|++.+. ...+. ........-.....||++||||--
T Consensus 545 ~g~~l~V~ntHL~~~p~~~--~~R~~Qa~~l~~~l~--~~~~~-~~~~~~~~~~~~~pvIl~GDFNs~ 607 (727)
T 4b8c_D 545 SGDTIWAVTTHLHWDPKFN--DVKTFQVGVLLDHLE--TLLKE-ETSHNFRQDIKKFPVLICGDFNSY 607 (727)
T ss_dssp --------------------------------------------------------------------
T ss_pred CCceEEEEEeccccCCCCC--chHHHHHHHHHHHHH--HHHHH-hcccccccccCCCceEEecccCCC
Confidence 3678999999998864321 235444444444331 00000 000000000113469999999954
No 23
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=96.49 E-value=0.0023 Score=60.08 Aligned_cols=38 Identities=18% Similarity=0.206 Sum_probs=24.2
Q ss_pred ccCcceeecCCCc-eeeeecc-CCCccCCCcccccEEEEE
Q 010619 430 AWCDRILWRGNGI-EQLSYIR-GESRFSDHRPVCAVFSVE 467 (506)
Q Consensus 430 SWcDRIL~~~~~i-~~l~Y~~-~e~~~SDHrPV~a~F~v~ 467 (506)
.--|+||....-. ....+.- .+...|||.||.+.|.+.
T Consensus 218 ~rID~i~~s~~~~~~~~~~~v~~~~~~SDH~pv~~~l~~~ 257 (259)
T 2jc5_A 218 WRIDYQMVTPELAAKAVSAHVYKDEKFSDHAPLVVEYDYA 257 (259)
T ss_dssp ECCEEEEECHHHHTTEEEEEECCSSCCSSBCCEEEEESCC
T ss_pred eEEEEEEECHHHHhHHhheeecCCCCCCCcccEEEEEecc
Confidence 4579999875311 1222221 256789999999998653
No 24
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=96.20 E-value=0.0099 Score=58.83 Aligned_cols=37 Identities=27% Similarity=0.357 Sum_probs=23.6
Q ss_pred EEEEEEeeCCCCCCCCCCCcccccCCCCCCcEEEEeeEEE
Q 010619 42 RIYAATWNVGGKTPSNSLNLEDFLEVECSADIYVCGFQEI 81 (506)
Q Consensus 42 rifvgTWNV~g~~p~~~ldl~~wl~~~~~~DiyviGfQEi 81 (506)
.+-|.||||.|......-.|.+||. +..||| |+|||+
T Consensus 61 ~lrv~t~Nv~g~~~~~~~~i~~~i~-~~~~DI--i~LQE~ 97 (318)
T 1hd7_A 61 TLKICSWNVDGLRAWIKKKGLDWVK-EEAPDI--LCLQET 97 (318)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHH-HHCCSE--EEEECC
T ss_pred ceEEEEEecCcchhhhhhhHHHHHH-hhCCCE--EEEEEc
Confidence 4678999999864221112455653 346886 689995
No 25
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=95.97 E-value=0.011 Score=56.41 Aligned_cols=38 Identities=16% Similarity=0.006 Sum_probs=23.8
Q ss_pred CcceeecCCCce-eeee-ccCCCccCCCcccccEEEEEec
Q 010619 432 CDRILWRGNGIE-QLSY-IRGESRFSDHRPVCAVFSVEVE 469 (506)
Q Consensus 432 cDRIL~~~~~i~-~l~Y-~~~e~~~SDHrPV~a~F~v~v~ 469 (506)
-|+||....-.. .... ...+...|||.||.+.+.....
T Consensus 221 ID~il~s~~~~~~~~~~~i~~~~~~SDH~Pv~~~~~~~~~ 260 (265)
T 3g91_A 221 LDYFFVNEEFKGKVKRSWILSDVMGSDHCPIGLEIELLEH 260 (265)
T ss_dssp CEEEEEEGGGGGGEEEEEECTTCCSSSBCCEEEEEECCCC
T ss_pred EEEEEECHHHHhhhcEEEEeCCCCCCCcceEEEEhhhhhh
Confidence 799997754321 1111 1234578999999999865543
No 26
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=95.84 E-value=0.017 Score=61.50 Aligned_cols=35 Identities=14% Similarity=-0.067 Sum_probs=22.4
Q ss_pred CcceeecCCCc-eeeee-ccCCCccCCCcccccEEEE
Q 010619 432 CDRILWRGNGI-EQLSY-IRGESRFSDHRPVCAVFSV 466 (506)
Q Consensus 432 cDRIL~~~~~i-~~l~Y-~~~e~~~SDHrPV~a~F~v 466 (506)
-|+||....-. ....+ ...+...|||.||.+.|.+
T Consensus 430 IDyIlvS~~l~~~v~~~~I~~~~~~SDH~PV~~~l~~ 466 (467)
T 2j63_A 430 LDYFVVSSRLASYVVDCFPMPTVMGSDHCPFQMWMRH 466 (467)
T ss_dssp CEEEEEEGGGGGGEEEEEECTTCCSSSBCCEEEEEEC
T ss_pred eEEEEEcHHHHcceeEEEECCCCCCCCcccEEEEEEc
Confidence 68999765322 12222 2234678999999998864
No 27
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=94.69 E-value=0.12 Score=49.40 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=24.2
Q ss_pred EEEEEeeCCCCCCCCCCCcccccCCCCCCcEEEEeeEEE
Q 010619 43 IYAATWNVGGKTPSNSLNLEDFLEVECSADIYVCGFQEI 81 (506)
Q Consensus 43 ifvgTWNV~g~~p~~~ldl~~wl~~~~~~DiyviGfQEi 81 (506)
+-|.||||||..-.... |.+||. +..||| |++||.
T Consensus 8 mki~s~Nvn~~r~~~~~-l~~~l~-~~~~DI--l~LQEt 42 (240)
T 2ei9_A 8 LRIGQINLGGAEDATRE-LPSIAR-DLGLDI--VLVQEQ 42 (240)
T ss_dssp EEEEEEECTTCHHHHHT-HHHHHH-HHTCSE--EEEESC
T ss_pred ceEEEEecCccHHHHHH-HHHHHH-HcCCCE--EEeecc
Confidence 56899999987433222 677885 356786 568996
No 28
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=92.86 E-value=0.14 Score=48.83 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=20.1
Q ss_pred ceEEEEEEEEe---ceEEEEEeecCCCCC
Q 010619 279 KGCTSISMSVY---NTSFCFVCCHLASGE 304 (506)
Q Consensus 279 KGaVavr~~l~---~ts~cFVn~HLaAg~ 304 (506)
.+...+.|... +..|.+||+||.+..
T Consensus 111 R~p~~~~~~~~~~~g~~~~vi~~Hl~~~~ 139 (260)
T 2a40_B 111 REPAVVKFSSHSTKVKEFAIVALHSAPSD 139 (260)
T ss_dssp SCCEEEEEECTTSSSSEEEEEECCCCGGG
T ss_pred eCCEEEEEEeCCCCCceEEEEEecCCCCC
Confidence 56667777765 579999999999753
No 29
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=84.09 E-value=1.3 Score=46.18 Aligned_cols=75 Identities=8% Similarity=0.014 Sum_probs=39.9
Q ss_pred ceEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcC-CCcccCCCCCCCCCCcccccccEEEeccccceeecCHHHHHHHH
Q 010619 290 NTSFCFVCCHLASGEKEGDELKRNADVAEILKSTQ-FPKICKGPNPRTAPERIIDHDRVIWLGDLNYRVALSYEKTRLLL 368 (506)
Q Consensus 290 ~ts~cFVn~HLaAg~~~~~~~rRN~D~~~Il~~~~-F~~~~~~~~~~~~~~~i~dhD~vfw~GDLNYRI~l~~~ev~~li 368 (506)
+..|+++|+||..+... ...|..+...|++.+. |........+ . ...-...-.+|++||||-- +...+-+++
T Consensus 194 ~~~l~V~nTHL~~~p~~--~~vRl~Q~~~Ll~~l~~~~~~~~~~~~-~-~~~~~~~~PvIl~GDFNs~---P~s~vy~~L 266 (398)
T 3ngq_A 194 KQLLIVANAHMHWDPEY--SDVKLIQTMMFVSEVKNILEKASSRPG-S-PTADPNSIPLVLCADLNSL---PDSGVVEYL 266 (398)
T ss_dssp CCEEEEEEEECCCCTTC--HHHHHHHHHHHHHHHHHHHCC---------------CCCEEEEEECSCC---TTSHHHHHH
T ss_pred CcEEEEEEeCcCCCCCC--HHHHHHHHHHHHHHHHHHHHHhhcccc-c-ccccCCCCceEEEeeCCCC---CCCHHHHHH
Confidence 45699999999987543 2347777776766542 1110000000 0 0000112369999999953 445566666
Q ss_pred hcC
Q 010619 369 EDN 371 (506)
Q Consensus 369 ~~~ 371 (506)
..|
T Consensus 267 ~~G 269 (398)
T 3ngq_A 267 SNG 269 (398)
T ss_dssp HHT
T ss_pred hcC
Confidence 544
No 30
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=79.80 E-value=1.6 Score=40.46 Aligned_cols=35 Identities=29% Similarity=0.289 Sum_probs=21.2
Q ss_pred EEEEEeeCCCCCCCCCCCcccccCCCCCCcEEEEeeEEE
Q 010619 43 IYAATWNVGGKTPSNSLNLEDFLEVECSADIYVCGFQEI 81 (506)
Q Consensus 43 ifvgTWNV~g~~p~~~ldl~~wl~~~~~~DiyviGfQEi 81 (506)
+-|.||||+|...... .|.+++. +..||| |+|||+
T Consensus 2 lrv~t~Nv~g~~~~~~-~i~~~i~-~~~~Di--i~lQE~ 36 (257)
T 2voa_A 2 LKIATFNVNSIRSRLH-IVIPWLK-ENKPDI--LCMQET 36 (257)
T ss_dssp EEEEEEECSCGGGTHH-HHHHHHH-HHCCSE--EEEECC
T ss_pred eEEEEEecCChHHHHH-HHHHHHh-hcCCCE--EEEEEe
Confidence 4589999998642211 1233442 346885 678995
No 31
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=79.52 E-value=0.34 Score=45.27 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=21.0
Q ss_pred EEEEeeCCCCCCCCCCCcccccCCCCCCcEEEEeeEEE
Q 010619 44 YAATWNVGGKTPSNSLNLEDFLEVECSADIYVCGFQEI 81 (506)
Q Consensus 44 fvgTWNV~g~~p~~~ldl~~wl~~~~~~DiyviGfQEi 81 (506)
-|+||||+|..... -.|.++|. +..||| |||||+
T Consensus 2 rv~t~Nv~~~~~~~-~~i~~~i~-~~~~Di--i~LQE~ 35 (268)
T 1ako_A 2 KFVSFNINGLRARP-HQLEAIVE-KHQPDV--IGLQET 35 (268)
T ss_dssp EEEEEECSCGGGCH-HHHHHHHH-HHCCSE--EEEECC
T ss_pred EEEEEehhHHHHHH-HHHHHHHH-HcCCCE--EEEEec
Confidence 47999999863211 01334443 356885 789995
No 32
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=77.54 E-value=3.6 Score=40.62 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=36.2
Q ss_pred CCceEEEEEEEEeceEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcccccccEEEecccc
Q 010619 277 GNKGCTSISMSVYNTSFCFVCCHLASGEKEGDELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHDRVIWLGDLN 354 (506)
Q Consensus 277 GNKGaVavr~~l~~ts~cFVn~HLaAg~~~~~~~rRN~D~~~Il~~~~F~~~~~~~~~~~~~~~i~dhD~vfw~GDLN 354 (506)
-..|++.|+ +.+ +.|++.||.+.... .|.+-+..|.+.+.=. . ..+. ..+...+.+||||
T Consensus 120 ~~R~~l~i~--i~g--~~f~s~Hl~~~~~~----ea~~~v~~I~~~~~~~-~-------~~~~--~~~~~~ii~GDFN 179 (261)
T 1sr4_B 120 QSRPAVGIR--IGT--DVFFTVHALATGGS----DAVSLIRNIFTTFNSS-S-------SPPE--RRVYSWMVVGDFN 179 (261)
T ss_dssp CCCCEEEEE--ETT--EEEEEEECCTTTTT----THHHHHHHHHHHHHC-----------CGG--GGGCEEEEEEECS
T ss_pred cCcceEEEE--ECC--eEEEEeCCCCCCCc----hHHHHHHHHHHHHHhc-c-------cCCc--ccCCcEEEEeeCC
Confidence 367888884 677 99999999997521 2444455555432100 0 0000 1235799999999
No 33
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=74.30 E-value=0.38 Score=44.67 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=23.0
Q ss_pred EEEEEeeCCCCCCCCCCCcccccCCCCCCcEEEEeeEEE
Q 010619 43 IYAATWNVGGKTPSNSLNLEDFLEVECSADIYVCGFQEI 81 (506)
Q Consensus 43 ifvgTWNV~g~~p~~~ldl~~wl~~~~~~DiyviGfQEi 81 (506)
+-|.||||+|......-.|.+++. +..||| |+|||+
T Consensus 2 l~v~t~Ni~~~~~~~~~~i~~~i~-~~~~DI--i~LQE~ 37 (259)
T 2jc5_A 2 LKIISANVNGIRSAYKKGFYEYIA-ASGADI--VCVQEL 37 (259)
T ss_dssp EEEEEEECSSHHHHHHTTHHHHHH-HTTCSE--EEEECC
T ss_pred cEEEEEeeccHHHHHHhHHHHHHH-hcCCCE--EEEEEe
Confidence 458999999853221113556664 457896 678996
No 34
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=72.70 E-value=0.33 Score=46.25 Aligned_cols=37 Identities=27% Similarity=0.366 Sum_probs=23.2
Q ss_pred EEEEEEeeCCCCCCCCCCCcccccCCCCCCcEEEEeeEEE
Q 010619 42 RIYAATWNVGGKTPSNSLNLEDFLEVECSADIYVCGFQEI 81 (506)
Q Consensus 42 rifvgTWNV~g~~p~~~ldl~~wl~~~~~~DiyviGfQEi 81 (506)
.+-|.||||.|......-.|.++|. +..|| ||+|||+
T Consensus 28 ~l~v~t~Ni~~~~~~~~~~i~~~i~-~~~~D--Ii~LQE~ 64 (285)
T 2o3h_A 28 TLKIASWNVDGLRAWIKKKGLDWVK-EEAPD--ILCLQET 64 (285)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHH-HHCCS--EEEEECC
T ss_pred ceEEEEEecccChhhhhhhHHHHHH-hcCCC--EEEEEEe
Confidence 4668999999853221112455553 34688 5789995
No 35
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=71.72 E-value=0.33 Score=45.90 Aligned_cols=36 Identities=28% Similarity=0.437 Sum_probs=23.1
Q ss_pred EEEEEeeCCCCCCCCCCCcccccCCCCCCcEEEEeeEEE
Q 010619 43 IYAATWNVGGKTPSNSLNLEDFLEVECSADIYVCGFQEI 81 (506)
Q Consensus 43 ifvgTWNV~g~~p~~~ldl~~wl~~~~~~DiyviGfQEi 81 (506)
+-|.||||+|........+.+||. +..||| |+|||+
T Consensus 4 l~i~s~Nv~g~~~~~~~~l~~~i~-~~~~DI--v~LQEt 39 (265)
T 3g91_A 4 LKIISWNVNGLRAVHRKGFLKWFM-EEKPDI--LCLQEI 39 (265)
T ss_dssp EEEEEEECSCHHHHHHHTHHHHHH-HHCCSE--EEEECC
T ss_pred cEEEEEEcCCchhhhhhhHHHHHH-hcCCCE--EEEEec
Confidence 457899999964322113566764 346886 568995
No 36
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=70.75 E-value=0.47 Score=43.31 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=22.9
Q ss_pred EEEEEEeeCCCCCCCCCC-CcccccCCCCCCcEEEEeeEEE
Q 010619 42 RIYAATWNVGGKTPSNSL-NLEDFLEVECSADIYVCGFQEI 81 (506)
Q Consensus 42 rifvgTWNV~g~~p~~~l-dl~~wl~~~~~~DiyviGfQEi 81 (506)
.+-|.||||+|....... .|.+++. +..||| |+|||+
T Consensus 7 ~lri~t~Nv~g~~~~~~~~~~~~~i~-~~~~DI--v~LQE~ 44 (238)
T 1vyb_A 7 HITILTLNINGLNSAIKRHRLASWIK-SQDPSV--CCIQET 44 (238)
T ss_dssp CEEEEEEECSCCCSHHHHHHHHHHHH-HHCCSE--EEEECC
T ss_pred cceEEEEecccCCchhhHHHHHHHHH-HcCCCE--EEEecc
Confidence 356899999986532111 2344553 346885 679996
No 37
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=64.49 E-value=0.8 Score=43.71 Aligned_cols=57 Identities=14% Similarity=0.102 Sum_probs=35.0
Q ss_pred CCceEEEEEEEEeceEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcccccccEEEeccccce
Q 010619 277 GNKGCTSISMSVYNTSFCFVCCHLASGEKEGDELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHDRVIWLGDLNYR 356 (506)
Q Consensus 277 GNKGaVavr~~l~~ts~cFVn~HLaAg~~~~~~~rRN~D~~~Il~~~~F~~~~~~~~~~~~~~~i~dhD~vfw~GDLNYR 356 (506)
...|++.|.+.+ ..+.++|+|++.+... ....+.+.++++.+. ...+|++||||=-
T Consensus 76 ~~~~~~~i~i~~--~~i~i~svY~P~~~~~---~~~~~~l~~l~~~~~-------------------~~~~Ii~GDfN~~ 131 (240)
T 2ei9_A 76 SSTHITVVHIGG--WDLYMVSAYFQYSDPI---DPYLHRLGNILDRLR-------------------GARVVICADTNAH 131 (240)
T ss_dssp CCSSEEEEEETT--TTEEEEEEECCTTSCS---HHHHHHHHHHHHHTT-------------------TSCEEEEEECCCC
T ss_pred CCCCEEEEEEee--ccEEEEEEEcCCCCch---hHHHHHHHHHHHhcC-------------------CCcEEEEEecccc
Confidence 356777766643 5688999999998642 223333444432210 1368999999954
Q ss_pred e
Q 010619 357 V 357 (506)
Q Consensus 357 I 357 (506)
-
T Consensus 132 ~ 132 (240)
T 2ei9_A 132 S 132 (240)
T ss_dssp C
T ss_pred c
Confidence 3
No 38
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=64.10 E-value=1.8 Score=42.77 Aligned_cols=60 Identities=18% Similarity=0.191 Sum_probs=37.6
Q ss_pred CceEEEEEEEEeceEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcccccccEEEeccccce
Q 010619 278 NKGCTSISMSVYNTSFCFVCCHLASGEKEGDELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHDRVIWLGDLNYR 356 (506)
Q Consensus 278 NKGaVavr~~l~~ts~cFVn~HLaAg~~~~~~~rRN~D~~~Il~~~~F~~~~~~~~~~~~~~~i~dhD~vfw~GDLNYR 356 (506)
..+.++|++ + .+.|.+.|+.+...+ + |.+.+..|.+.+.= + +..+-..--.+++||||=.
T Consensus 130 ~Rp~lgiri---~-~~~ff~tHa~a~~g~-d---a~a~v~~I~~~~~~---~--------~~~~~~~~pwii~GDFNr~ 189 (262)
T 2f1n_A 130 GRPLLGIRI---G-NDAFFTAHAIAMRNN-D---APALVEEVYNFFRD---S--------RDPVHQALNWMILGDFNRE 189 (262)
T ss_dssp CCCEEEEEE---T-TEEEEEEECCSSSSC-S---HHHHHHHHHHHHHT---C--------SSHHHHTCEEEEEEECSSC
T ss_pred CCceEEEEE---C-CEEEEEEEecCCCCc-c---HHHHHHHHHHHHhc---C--------cccccCCCcEEEEecCCCC
Confidence 677888887 2 488999999997432 2 67777777654320 0 0000001368999999953
No 39
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=63.59 E-value=5.5 Score=37.88 Aligned_cols=15 Identities=47% Similarity=0.711 Sum_probs=13.0
Q ss_pred CccCCCcccccEEEE
Q 010619 452 SRFSDHRPVCAVFSV 466 (506)
Q Consensus 452 ~~~SDHrPV~a~F~v 466 (506)
...|||.||.|.|.+
T Consensus 291 ~~~SDH~pv~a~l~~ 305 (306)
T 2ddr_A 291 NDYSDHYPVEATISM 305 (306)
T ss_dssp CCSCSSCCEEEEEEC
T ss_pred cCCCCCcceeEEEEe
Confidence 468999999999875
No 40
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=63.03 E-value=0.67 Score=49.24 Aligned_cols=39 Identities=33% Similarity=0.403 Sum_probs=23.9
Q ss_pred EEEEEEeeCCCCCCCC--C-CCcccccCCCCCCcEEEEeeEEEEec
Q 010619 42 RIYAATWNVGGKTPSN--S-LNLEDFLEVECSADIYVCGFQEIVKL 84 (506)
Q Consensus 42 rifvgTWNV~g~~p~~--~-ldl~~wl~~~~~~DiyviGfQEiV~L 84 (506)
.+-|.||||+|..... . -.|.+||. +..||| |+|||+ .+
T Consensus 149 ~LKI~TwNVnGl~~~~kr~~~~i~~~I~-~~~pDI--VcLQEt-k~ 190 (467)
T 2j63_A 149 MYKFITWNVAGLRGLLKKNASALRAFME-AEKPDV--LCLQET-KL 190 (467)
T ss_dssp EEEEEEEECSCHHHHHHHCTTHHHHHHH-HHCCSE--EEEECC-CC
T ss_pred CeEEEEEEcCCCcccccccHHHHHHHHH-HcCCCE--EEEEec-cc
Confidence 4678999999852111 0 12456664 345885 678995 44
No 41
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=62.85 E-value=0.73 Score=45.25 Aligned_cols=52 Identities=17% Similarity=0.134 Sum_probs=30.6
Q ss_pred eEEEEEeecCCCCCCCc-cHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcccccccEEEecccccee
Q 010619 291 TSFCFVCCHLASGEKEG-DELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHDRVIWLGDLNYRV 357 (506)
Q Consensus 291 ts~cFVn~HLaAg~~~~-~~~rRN~D~~~Il~~~~F~~~~~~~~~~~~~~~i~dhD~vfw~GDLNYRI 357 (506)
..|.++|+|++++.... ....|.+.+..|.+.+. .+.....+|++||||-..
T Consensus 163 ~~~~v~~vh~p~~~~~~~~~~~r~~~~~~l~~~l~---------------~~~~~~pvIl~GDFN~~~ 215 (318)
T 1hd7_A 163 DSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLK---------------GLASRKPLVLCGDLNVAH 215 (318)
T ss_dssp SSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHH---------------HHHHHSCEEEEEECSCCC
T ss_pred CCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHH---------------hcccCCCEEEEeeCCCCC
Confidence 47999999998765321 12335555555543321 011125699999999643
No 42
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=59.38 E-value=2.1 Score=39.63 Aligned_cols=35 Identities=29% Similarity=0.228 Sum_probs=20.9
Q ss_pred cCcceeecCCCc-eeeeec-cC----CCccCCCcccccEEE
Q 010619 431 WCDRILWRGNGI-EQLSYI-RG----ESRFSDHRPVCAVFS 465 (506)
Q Consensus 431 WcDRIL~~~~~i-~~l~Y~-~~----e~~~SDHrPV~a~F~ 465 (506)
--|+||....-. ....+. .. ....|||.||.+.|.
T Consensus 216 rID~i~~s~~~~~~~~~~~v~~~~~~~~~~SDH~pv~~~l~ 256 (257)
T 2voa_A 216 RGDAILATPPLAERCVDCYADIKPRLAEKPSDHLPLVAVFD 256 (257)
T ss_dssp CCEEEEECHHHHTTEEEEEECCHHHHSSSCCSBCCEEEEEC
T ss_pred EEEEEEECHHHHhhhheeEeehhhccCCCCCCccCEEEEEe
Confidence 379999864311 012221 11 136899999999875
No 43
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=54.34 E-value=2.6 Score=39.19 Aligned_cols=35 Identities=26% Similarity=0.061 Sum_probs=24.1
Q ss_pred cCcceeecCCCceeeeeccC-----CCccCCCcccccEEEEE
Q 010619 431 WCDRILWRGNGIEQLSYIRG-----ESRFSDHRPVCAVFSVE 467 (506)
Q Consensus 431 WcDRIL~~~~~i~~l~Y~~~-----e~~~SDHrPV~a~F~v~ 467 (506)
--|+||. .+++...+... ....|||.||.+.|.+.
T Consensus 213 riD~i~~--~~~~~~~~~v~~~~~~~~~~SDH~pv~~~l~~~ 252 (257)
T 3l1w_A 213 EIDYIYV--KGWQVQQTASLTDSIDGRFPSDHFPLEAEVAGE 252 (257)
T ss_dssp CCEEEEE--ESEEEEEEEECCCCBTTBCSSSBCCEEEEEEEC
T ss_pred ceeEEEE--CCcEEEEEEEeccCcCCcccCCcceEEEEEEEE
Confidence 3699999 44555544321 23579999999998764
No 44
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=52.78 E-value=16 Score=36.13 Aligned_cols=36 Identities=31% Similarity=0.565 Sum_probs=24.5
Q ss_pred EEEEeeCCCCCCC-C---CCCcccccCCCCCCcEEEEeeEEE
Q 010619 44 YAATWNVGGKTPS-N---SLNLEDFLEVECSADIYVCGFQEI 81 (506)
Q Consensus 44 fvgTWNV~g~~p~-~---~ldl~~wl~~~~~~DiyviGfQEi 81 (506)
-|+|||.-|..+. + ..+|...+...++||| |++||.
T Consensus 17 kV~TwNiqgs~~~teskw~~~v~~lI~~~~~~DI--vaLQEa 56 (262)
T 2f1n_A 17 RVATWNLQGASATTESKWNINVRQLISGENAVDI--LAVQEA 56 (262)
T ss_dssp CEEEEEEEECTTSCHHHHHTHHHHHHSSTTCCSE--EEEEEE
T ss_pred EEEEEEcCCCCCCCcccccccHHHHHccCCCCCE--EEEeec
Confidence 4799999987553 2 2455665544567997 578995
No 45
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=47.17 E-value=3.4 Score=40.61 Aligned_cols=38 Identities=16% Similarity=-0.028 Sum_probs=21.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCcccc------cC---CCCCCcEEEEeeEEE
Q 010619 41 LRIYAATWNVGGKTPSNSLNLEDF------LE---VECSADIYVCGFQEI 81 (506)
Q Consensus 41 ~rifvgTWNV~g~~p~~~ldl~~w------l~---~~~~~DiyviGfQEi 81 (506)
-.|-|.||||.+..+..+-+ ..| +. ....||| |||||+
T Consensus 28 ~~lrV~T~Ni~~~~~~~~~~-~~~~~R~~~i~~~~~~~~pDI--v~LQEv 74 (317)
T 3i41_A 28 TDLKLVSHNVYMLSTVLYPN-WGQYKRADLIGQSSYIKNNDV--VIFNEA 74 (317)
T ss_dssp CCCCEEEEEEEECCTTTSTT-SCHHHHHHHHHHCSTTSSCSE--EEEEEE
T ss_pred CceEEEEEecccCccccCCC-ccHHHHHHHHHHHhhccCCCE--EEEEee
Confidence 35667899999863321111 012 11 1357885 689996
No 46
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=42.46 E-value=8.2 Score=38.04 Aligned_cols=37 Identities=38% Similarity=0.536 Sum_probs=25.1
Q ss_pred EEEeeCCCCCCCC--C--CCcccccCCCCCCcEEEEeeEEEEe
Q 010619 45 AATWNVGGKTPSN--S--LNLEDFLEVECSADIYVCGFQEIVK 83 (506)
Q Consensus 45 vgTWNV~g~~p~~--~--ldl~~wl~~~~~~DiyviGfQEiV~ 83 (506)
|+|||+-|..+.. . ..+..||..+..|||+ .+||+--
T Consensus 7 v~TwNi~g~~~~~~~k~~~~i~~~i~~~~~~DIl--aLQEa~~ 47 (261)
T 1sr4_B 7 VATWNLQGSSAVNESKWNINVRQLLSGEQGADIL--MVQEAGS 47 (261)
T ss_dssp EEEEECCCCSSSSHHHHHHHHHHHHCSTTCCSEE--EEESCCS
T ss_pred EEEEEcCCCCCCChhhhhhHHHHHHcCCCCCCEE--EEecCCC
Confidence 8999999964433 1 1246677655789975 5799633
No 47
>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase, F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces cerevisiae}
Probab=27.75 E-value=12 Score=39.82 Aligned_cols=17 Identities=47% Similarity=0.784 Sum_probs=14.4
Q ss_pred ccccccEEEecccccee
Q 010619 341 IIDHDRVIWLGDLNYRV 357 (506)
Q Consensus 341 i~dhD~vfw~GDLNYRI 357 (506)
+.+.+.||+=||||||=
T Consensus 374 L~~S~LVIFKGDLNYRK 390 (471)
T 3pt1_A 374 LQKSNLVIFKGDLNYRK 390 (471)
T ss_dssp HTTCSEEEEEHHHHHHH
T ss_pred HhhCcEEEEecchhhhh
Confidence 45678999999999984
No 48
>2yka_B ORF57 protein, 52 kDa immediate-early phosphoprotein; RNA binding protein-transcription complex, RNA binding prote; NMR {Saimiriine herpesvirus 2}
Probab=29.00 E-value=17 Score=23.12 Aligned_cols=9 Identities=33% Similarity=0.973 Sum_probs=7.5
Q ss_pred CcccCccee
Q 010619 428 TPAWCDRIL 436 (506)
Q Consensus 428 ~PSWcDRIL 436 (506)
.|+|.|||=
T Consensus 8 r~nWs~RV~ 16 (26)
T 2yka_B 8 KTSWADRVR 16 (26)
Confidence 589999984
No 49
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=23.16 E-value=20 Score=33.53 Aligned_cols=12 Identities=42% Similarity=0.600 Sum_probs=10.4
Q ss_pred ccCCCcccccEE
Q 010619 453 RFSDHRPVCAVF 464 (506)
Q Consensus 453 ~~SDHrPV~a~F 464 (506)
..|||.||.+.|
T Consensus 248 ~~SDH~PV~~~l 259 (260)
T 2a40_B 248 AISDHYPVEVTL 259 (260)
T ss_dssp HHCSBCCEEEEB
T ss_pred hcCCCCeEEEEe
Confidence 479999999876
No 50
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=21.24 E-value=65 Score=28.38 Aligned_cols=30 Identities=13% Similarity=0.338 Sum_probs=20.2
Q ss_pred EEeeCCCCCCCCCCCc---ccccCCCCCCcEEEEee
Q 010619 46 ATWNVGGKTPSNSLNL---EDFLEVECSADIYVCGF 78 (506)
Q Consensus 46 gTWNV~g~~p~~~ldl---~~wl~~~~~~DiyviGf 78 (506)
-.||+..- ++|+. ..++...+.|||++||-
T Consensus 43 ~~W~~~~~---~~l~~e~l~~l~~~~p~pevliiGT 75 (135)
T 2fvt_A 43 WGWDVTKP---EQIDRYSLQRVFDNANAIDTLIVGT 75 (135)
T ss_dssp EEESCCST---TCCCTTTTHHHHHTTTSCSEEEEEC
T ss_pred cccCCCCc---ccCCHHHHHHHHhcCCCCCEEEEcC
Confidence 67998643 33444 44555567899999995
No 51
>1hnr_A H-NS; histone-like protein H1, DNA-binding protein; NMR {Escherichia coli} SCOP: a.155.1.1 PDB: 1hns_A
Probab=20.55 E-value=40 Score=24.72 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=16.5
Q ss_pred CCcccc-cCCCC--CCCCccccCCCCccCcccCcc
Q 010619 403 APTYKY-SHNSD--CYAGETVKSKKKRRTPAWCDR 434 (506)
Q Consensus 403 ~PTYKy-~~gsd--~Yd~~~~~ss~K~R~PSWcDR 434 (506)
+|-|+| +++.. .+. ..-|.|.|--.
T Consensus 4 ~~KYry~dp~G~~~TWt-------GrGr~P~wi~~ 31 (47)
T 1hnr_A 4 PAKYSYVDENGETKTWT-------GQGRTPAVIKK 31 (47)
T ss_dssp SCCBEECCSSCCCEECC-------TTSSCCSHHHH
T ss_pred CCceeecCCCCCccccc-------CCCCCCHHHHH
Confidence 688998 45543 454 35799999633
Done!