Query 010619
Match_columns 506
No_of_seqs 278 out of 1066
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 10:41:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010619.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010619hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1i9za_ d.151.1.2 (A:) Synapto 100.0 1.4E-82 1E-86 651.4 28.9 321 28-485 12-334 (345)
2 d2imqx1 d.151.1.2 (X:3-282) Sa 100.0 1.2E-44 8.5E-49 348.5 27.7 207 234-468 70-280 (280)
3 d2ddra1 d.151.1.3 (A:7-305) Sp 99.2 9E-12 6.5E-16 116.7 9.1 71 275-358 121-195 (299)
4 d1zwxa1 d.151.1.3 (A:41-333) S 99.1 1.1E-10 8.2E-15 108.7 11.1 71 273-356 119-193 (293)
5 d1wdua_ d.151.1.1 (A:) Endonuc 98.2 1.7E-06 1.2E-10 77.6 8.0 139 279-466 86-226 (228)
6 d1sr4b_ d.151.1.1 (B:) Cytolet 98.0 3.7E-05 2.7E-09 68.9 13.6 36 45-82 7-46 (261)
7 d2f1na1 d.151.1.1 (A:1-250) Cy 97.5 0.00033 2.4E-08 63.3 11.7 60 277-355 118-177 (250)
8 d1vyba_ d.151.1.1 (A:) Endonuc 97.2 0.0014 9.8E-08 58.4 12.3 24 281-304 95-118 (236)
9 d2a40b1 d.151.1.1 (B:1-260) De 95.7 0.0035 2.5E-07 53.6 4.0 48 291-357 126-173 (260)
10 d1akoa_ d.151.1.1 (A:) DNA-rep 91.9 0.0082 5.9E-07 52.0 -1.6 34 432-465 228-267 (268)
11 d1hd7a_ d.151.1.1 (A:) DNA rep 90.1 0.018 1.3E-06 51.7 -1.1 39 39-81 15-54 (275)
12 d1hd7a_ d.151.1.1 (A:) DNA rep 88.1 0.095 6.9E-06 46.7 2.3 33 432-465 239-274 (275)
13 d1vyba_ d.151.1.1 (A:) Endonuc 87.0 0.022 1.6E-06 50.0 -2.7 36 43-81 6-42 (236)
14 d2a40b1 d.151.1.1 (B:1-260) De 84.5 0.028 2E-06 47.6 -3.3 36 44-81 2-40 (260)
15 d1akoa_ d.151.1.1 (A:) DNA-rep 79.2 0.31 2.2E-05 41.5 1.5 33 45-81 3-35 (268)
16 d2fvta1 c.103.1.1 (A:1-127) Hy 24.9 24 0.0017 28.6 3.3 30 46-78 43-75 (127)
17 d1hnra_ a.155.1.1 (A:) H1 prot 23.7 15 0.0011 25.4 1.4 24 403-433 4-30 (47)
18 d1wi1a_ b.55.1.1 (A:) Calcium- 21.1 67 0.0049 24.2 5.4 23 89-111 89-111 (126)
19 d1s0yb_ d.80.1.1 (B:) Trans-3- 20.6 37 0.0027 23.4 3.0 25 295-322 2-26 (55)
No 1
>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=100.00 E-value=1.4e-82 Score=651.43 Aligned_cols=321 Identities=32% Similarity=0.560 Sum_probs=279.4
Q ss_pred CCCCcCCCccceeEEEEEEEeeCCCCCCCCCCCcccccCC--CCCCcEEEEeeEEEEecCCCceeeecCcchHHHHHHHH
Q 010619 28 FEPSMTSVTEIQRLRIYAATWNVGGKTPSNSLNLEDFLEV--ECSADIYVCGFQEIVKLSAGNVLVIEDNEPAAKWLALI 105 (506)
Q Consensus 28 ~~~~~~~~~~~~~~rifvgTWNV~g~~p~~~ldl~~wl~~--~~~~DiyviGfQEiV~Lna~~vl~~ED~~p~~kW~~lI 105 (506)
|......|+..+++|||||||||||+.|+. +|.+||.. .+.||||||||||||+|++++++. +++.....|+.++
T Consensus 12 l~~r~~~~~~~~~l~I~v~TWNv~~~~~~~--~l~~~l~~~~~~~~DI~viglQEi~~~~~~~~~~-~~~~~~~~w~~~~ 88 (345)
T d1i9za_ 12 LRKRENEFSEHKNVKIFVASYNLNGCSATT--KLENWLFPENTPLADIYVVGFQEIVQLTPQQVIS-ADPAKRREWESCV 88 (345)
T ss_dssp HHHTGGGTEEEEEEEEEEEEEECTTCCCCS--CCHHHHSCSSSCCCSEEEEEEECSSCCC-----C-CCHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCceEEEEEEEcCCCccCCc--chHHhhccCCCCCCCEEEEEcccCCccchhhhcc-cCchhhHHHHHHH
Confidence 445566799999999999999999999976 46899975 457999999999999999999997 6899999999999
Q ss_pred HHHhCCCCCCCcccCCCCCCCCccCCCCCCCCCCCCCCCCCCcccccCchhhHhhhccccchhhhhccCCCCCCCchhhh
Q 010619 106 HQALNRPKNDSIYSTSESNSHTKQTNSNNNNNNSKDAKSPSSLNLFQKPSLKVLSRNLRADSTLLKACNCPIESPGRERR 185 (506)
Q Consensus 106 ~~aLN~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~r~~~~~~~~~~~~~~~~~~~~~ 185 (506)
..+|+...
T Consensus 89 ~~~~~~~~------------------------------------------------------------------------ 96 (345)
T d1i9za_ 89 KRLLNGKC------------------------------------------------------------------------ 96 (345)
T ss_dssp HHHHHHTC------------------------------------------------------------------------
T ss_pred HHhccccc------------------------------------------------------------------------
Confidence 99997310
Q ss_pred hhhhccccccccccCccCCCccccccchhhhccCCCCCCCCcCCCCCCCeEEEEeeeeeceEEEEEEeCCCCCCcCceeE
Q 010619 186 RIRKLSDRTSKLECNHESLLPQRDISSVVVELFSIPEIPASSCSHGQRSYRLIASKQMVGIFLSVWVRNDLVPHIGHLRF 265 (506)
Q Consensus 186 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~s~qmvGi~L~Vfvr~~l~~~I~~v~~ 265 (506)
..+..|++|.+.+|+|+.|+||+|+++.++|++|.+
T Consensus 97 --------------------------------------------~~~~~Y~~v~~~~~~g~~l~vf~r~~~~~~i~~v~~ 132 (345)
T d1i9za_ 97 --------------------------------------------TSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEG 132 (345)
T ss_dssp --------------------------------------------CSSCCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEE
T ss_pred --------------------------------------------cCCCCeEEEEEecccCcEEEEEEcchhcccccccee
Confidence 123579999999999999999999999999999999
Q ss_pred eeEeeccceecCCceEEEEEEEEeceEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcccccc
Q 010619 266 SSVGRGIMGCLGNKGCTSISMSVYNTSFCFVCCHLASGEKEGDELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHD 345 (506)
Q Consensus 266 ~~v~tGi~G~~GNKGaVavr~~l~~ts~cFVn~HLaAg~~~~~~~rRN~D~~~Il~~~~F~~~~~~~~~~~~~~~i~dhD 345 (506)
+++++|++|.+||||||+|+|.+++++||||||||+||+++ ..+||+|+..|++++.|... +.+.++|
T Consensus 133 ~~~~~g~~g~~gnKGaV~vr~~i~~t~l~fvn~HL~ag~~~--~~~R~~~~~~i~~~l~~~~~----------~~~~~~d 200 (345)
T d1i9za_ 133 TVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTN--YDERDHDYRTIASGLRFRRG----------RSIFNHD 200 (345)
T ss_dssp EEEECCCC----CCEEEEEEEEETTEEEEEEEEECCCCSSC--HHHHHHHHHHHHHHCCCGGG----------CCTTSSS
T ss_pred EEEecCcCCcccCCceEEEEEEECCEEEEEEEecccCcccc--hHHHHHHHHHHHHhhccccc----------cccccCc
Confidence 99999999999999999999999999999999999999864 67899999999999988642 3567899
Q ss_pred cEEEeccccceeecCHHHHHHHHhcCChHHHHhhhhhHHHHhcCcccCCccccccccCCcccccCCCCCCCCccccCCCC
Q 010619 346 RVIWLGDLNYRVALSYEKTRLLLEDNDWDSLLEKDQLNIERESGRAFNGFNEGRIFFAPTYKYSHNSDCYAGETVKSKKK 425 (506)
Q Consensus 346 ~vfw~GDLNYRI~l~~~ev~~li~~~~~~~LL~~DQL~~e~~~g~~F~gf~Eg~I~F~PTYKy~~gsd~Yd~~~~~ss~K 425 (506)
+|||+||||||++++.+++.+++..++|..|+++|||..++..+.+|.||.|++|+|+|||||+.+++.|++ +.|
T Consensus 201 ~v~~~GDlN~R~~~~~~~~~~~i~~~~~~~l~~~dql~~~~~~~~~~~~~~E~~I~F~PTyk~~~~~~~yd~-----~~k 275 (345)
T d1i9za_ 201 YVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDT-----SDK 275 (345)
T ss_dssp EEEEEEECCCCBSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTSSCBCC-----STT
T ss_pred eeEEeccccccccCchhhhHhhhhccchhHHHHHHHHHhhhhccCcccCcccCCCCCCCCCeEECCCCccCC-----CCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999985 678
Q ss_pred ccCcccCcceeecCCCceeeeeccCCCccCCCcccccEEEEEechhhhccchhhhhhhcc
Q 010619 426 RRTPAWCDRILWRGNGIEQLSYIRGESRFSDHRPVCAVFSVEVERDVRIKSSNRLRKGFC 485 (506)
Q Consensus 426 ~R~PSWcDRIL~~~~~i~~l~Y~~~e~~~SDHrPV~a~F~v~v~~~v~~~~~~~~~~~~~ 485 (506)
+|+|||||||||++. +.++.|.+.++.+||||||+|.|.++|+.+..+++.+.+++...
T Consensus 276 ~RiPsWcDRIL~~~~-~~~~~Y~s~~~~~SDH~PV~a~f~v~v~~~~~~~~~~~~~~~~~ 334 (345)
T d1i9za_ 276 HRVPAWTDRILYRGE-LVPHSYQSVPLYYSDHRPIYATYEANIVKVDREKKKILFEELYN 334 (345)
T ss_dssp CCCCBCCEEEEEESS-CEEEEEEECCCCSSSBCCEEEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred eeCccccceEEeeCc-eeeeeeeccCCCCCCcccEEEEEEEEEEEECHHHHHHHHHHHHH
Confidence 999999999999975 67889999999999999999999999996655554444444433
No 2
>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]}
Probab=100.00 E-value=1.2e-44 Score=348.47 Aligned_cols=207 Identities=25% Similarity=0.421 Sum_probs=171.5
Q ss_pred CeEEEEeeeeeceEEEEEEeCCCCCCcCceeEeeEeeccceecCCceEEEEEEEEeceEEEEEeecCCCCCCCccHHHHH
Q 010619 234 SYRLIASKQMVGIFLSVWVRNDLVPHIGHLRFSSVGRGIMGCLGNKGCTSISMSVYNTSFCFVCCHLASGEKEGDELKRN 313 (506)
Q Consensus 234 ~Y~~v~s~qmvGi~L~Vfvr~~l~~~I~~v~~~~v~tGi~G~~GNKGaVavr~~l~~ts~cFVn~HLaAg~~~~~~~rRN 313 (506)
.|..+...+++|+.++||+|..+..+.. ....+++|+++.+||||+|.+++.+.++.|+|+|+||.++..+. .+|.
T Consensus 70 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~i~~~~~~~in~hl~~~~~~~--~~~~ 145 (280)
T d2imqx1 70 GYTKLKNTITETMGLTVYCLEKHLDQNT--LKNETIIVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTS--TNTK 145 (280)
T ss_dssp TEEEEEEEECSSEEEEEEEEGGGCCTTT--CCCEEEEEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCCT--TSSS
T ss_pred CeeEEEeeeeeceEEEEEEcccccccce--ecceeEeccCCcccCCcEEEEEEEECCEEEEeecccCCccchhH--HHHH
Confidence 5888999999999999999999977654 44667788888999999999999999999999999999987542 1221
Q ss_pred HHHHHHHHhcCCCcccCCCCCCCCCCcccccccEEEeccccceeecCHHHHHHHHhcCChHHHHhhhhhHHHHhcCcccC
Q 010619 314 ADVAEILKSTQFPKICKGPNPRTAPERIIDHDRVIWLGDLNYRVALSYEKTRLLLEDNDWDSLLEKDQLNIERESGRAFN 393 (506)
Q Consensus 314 ~D~~~Il~~~~F~~~~~~~~~~~~~~~i~dhD~vfw~GDLNYRI~l~~~ev~~li~~~~~~~LL~~DQL~~e~~~g~~F~ 393 (506)
.+. ... .........++++||+||||+|...........+....++.++..||+.... .+.+|.
T Consensus 146 ~~~---------~~~------~~~~~~~~~~~~vi~~GD~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 209 (280)
T d2imqx1 146 YAY---------DTR------LDYSKKDDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAK-EQKLFD 209 (280)
T ss_dssp SSC---------CGG------GCTTSSSSCCSEEEEEEECSCCBCSCHHHHHHHHHTTCHHHHHTTBTHHHHH-HTTSST
T ss_pred HHH---------HHh------hhhhhhccCCCeeEEecccccccccccHHHHhhhhcccchhhHHHHHHHHhh-hcchhh
Confidence 110 000 0111234567899999999999999999999999999999999999998765 467999
Q ss_pred CccccccccCCcccccCCCCCCCCccccCCCCccCcccCcceeecCC---Cceeeeecc-CCCccCCCcccccEEEEEe
Q 010619 394 GFNEGRIFFAPTYKYSHNSDCYAGETVKSKKKRRTPAWCDRILWRGN---GIEQLSYIR-GESRFSDHRPVCAVFSVEV 468 (506)
Q Consensus 394 gf~Eg~I~F~PTYKy~~gsd~Yd~~~~~ss~K~R~PSWcDRIL~~~~---~i~~l~Y~~-~e~~~SDHrPV~a~F~v~v 468 (506)
+|.|+++.|.|||++..+.+.|++ .|+||||||||++.. .++..+|.+ .++..|||+||+|.|.|.|
T Consensus 210 ~~~~~~~~ft~~~~~~~~~~~~~~--------~Rip~~iD~Il~~~~~~~~v~~~~y~~~~~~~~SDH~PV~a~F~l~~ 280 (280)
T d2imqx1 210 GWTEPQVTFKPTYKFKPNTDEYDL--------SATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVTL 280 (280)
T ss_dssp TCBCCCCCSCCCBCBCTTSSCBCT--------TSCCBCCEEEEEECSSSCCEEEEEEEECTTCCSSSSCCEEEEEEEEC
T ss_pred ccccCCCCCCCcccccCccccCCC--------cccCccCCEEEEECccCCceEEEEEEECCCCCCCCChheEEEEEEEC
Confidence 999999999999999999998874 699999999999854 467788865 5788999999999999875
No 3
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]}
Probab=99.22 E-value=9e-12 Score=116.67 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=47.3
Q ss_pred ecCCceEEEEEEEEeceEEEEEeecCCCCCCCc----cHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcccccccEEEe
Q 010619 275 CLGNKGCTSISMSVYNTSFCFVCCHLASGEKEG----DELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHDRVIWL 350 (506)
Q Consensus 275 ~~GNKGaVavr~~l~~ts~cFVn~HLaAg~~~~----~~~rRN~D~~~Il~~~~F~~~~~~~~~~~~~~~i~dhD~vfw~ 350 (506)
..+++|++.+.+.+.+..|+++++||.++.... +...|...+.+++..+. . ..+...+.||++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~~r~~q~~~~~~~~~--~-----------~~~~~~~~vi~~ 187 (299)
T d2ddra1 121 NLSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIK--N-----------KNIPNNEYVLIG 187 (299)
T ss_dssp -CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHH--H-----------HTCCTTSCEEEE
T ss_pred cccceeEEEEEEecCCeEEEEEEccccCCCCccchhhhHHHHHHHHHHHhhhhh--h-----------hcccccceEEEE
Confidence 467899999999999999999999999875321 12235555666654331 0 011234679999
Q ss_pred ccccceee
Q 010619 351 GDLNYRVA 358 (506)
Q Consensus 351 GDLNYRI~ 358 (506)
||||.+-.
T Consensus 188 GDfN~~~~ 195 (299)
T d2ddra1 188 GDMNVNKI 195 (299)
T ss_dssp EECCCCCT
T ss_pred ecCCCCcc
Confidence 99998754
No 4
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]}
Probab=99.12 E-value=1.1e-10 Score=108.69 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=47.4
Q ss_pred ceecCCceEEEEEEEEeceEEEEEeecCCCCCCCcc----HHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcccccccEE
Q 010619 273 MGCLGNKGCTSISMSVYNTSFCFVCCHLASGEKEGD----ELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHDRVI 348 (506)
Q Consensus 273 ~G~~GNKGaVavr~~l~~ts~cFVn~HLaAg~~~~~----~~rRN~D~~~Il~~~~F~~~~~~~~~~~~~~~i~dhD~vf 348 (506)
.....+||++.+.+.+.+..++|+++||.++..... ...|...+.+++..+.-. .....+.||
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-------------~~~~~~~vi 185 (293)
T d1zwxa1 119 ADRLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKK-------------NIPKDEIIF 185 (293)
T ss_dssp GGGGBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHH-------------TCCTTSEEE
T ss_pred ccccccceEEEEEEecCCceEEEEEeeeeccCCccchhHHHHHHHHHHHHhhhhhhhh-------------ccCCCCcEE
Confidence 345678999999999999999999999998754321 123455555544332100 011245799
Q ss_pred Eeccccce
Q 010619 349 WLGDLNYR 356 (506)
Q Consensus 349 w~GDLNYR 356 (506)
++||||-.
T Consensus 186 l~GDfN~~ 193 (293)
T d1zwxa1 186 IGGDLNVN 193 (293)
T ss_dssp EEEECCCC
T ss_pred EEeecCCC
Confidence 99999954
No 5
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]}
Probab=98.17 E-value=1.7e-06 Score=77.58 Aligned_cols=139 Identities=13% Similarity=0.082 Sum_probs=69.3
Q ss_pred ceEEEEEEEEeceEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcccccccEEEeccccceee
Q 010619 279 KGCTSISMSVYNTSFCFVCCHLASGEKEGDELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHDRVIWLGDLNYRVA 358 (506)
Q Consensus 279 KGaVavr~~l~~ts~cFVn~HLaAg~~~~~~~rRN~D~~~Il~~~~F~~~~~~~~~~~~~~~i~dhD~vfw~GDLNYRI~ 358 (506)
.+.+.+.+...+..++++|+|++++... ...-+.+..+++.. ....++++||||-.-.
T Consensus 86 ~~~~~~~i~~~~~~i~v~~~y~~~~~~~---~~~~~~l~~~~~~~-------------------~~~~vIi~GDfN~~~~ 143 (228)
T d1wdua_ 86 NNIVVVGIRTRAWEITLVSYYFEPDKPI---ESYLEQIKRVERKM-------------------GPKRLIFGGDANAKST 143 (228)
T ss_dssp SSEEEEEEECSSCEEEEEEEECCTTSCS---HHHHHHHHHHHHTT-------------------CSSSEEEEEECCCCCG
T ss_pred CCEEEEEEEcCCccEEEEEEEeCCcccc---hHHHHHHHHHHHhc-------------------CCceEEEecccccCch
Confidence 4567777777888999999999887643 12222233333211 1346899999996422
Q ss_pred cCHHHHHHHHhcCChHHHHhhhhhHHHHhcCcccCCccccccccCCcccccCCCCCCCCccccCCCCccCcccCcceeec
Q 010619 359 LSYEKTRLLLEDNDWDSLLEKDQLNIERESGRAFNGFNEGRIFFAPTYKYSHNSDCYAGETVKSKKKRRTPAWCDRILWR 438 (506)
Q Consensus 359 l~~~ev~~li~~~~~~~LL~~DQL~~e~~~g~~F~gf~Eg~I~F~PTYKy~~gsd~Yd~~~~~ss~K~R~PSWcDRIL~~ 438 (506)
... ...... ....|...+... ++.-..-.+.|||..-. ...+.+++.|+||..
T Consensus 144 ~~~--------~~~~~~--~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~-------------~~~~~~~rID~~~~s 196 (228)
T d1wdua_ 144 WWG--------SKEDDA--RGDQLMGTLGEL----GLHILNEGDVPTFDTIR-------------GGKRYQSRVDVTFCT 196 (228)
T ss_dssp GGT--------CSSCCH--HHHHHHHHHHHH----TCEECCCSCCCSEEC------------------CCEECCEEEEEC
T ss_pred hHh--------cccchh--HHHHHHHHHHhh----CccccccCCcccccccc-------------CCCCCCcceEEEEEC
Confidence 100 000000 001111111111 11111112345543211 234678899999987
Q ss_pred CCCcee-eeec-cCCCccCCCcccccEEEE
Q 010619 439 GNGIEQ-LSYI-RGESRFSDHRPVCAVFSV 466 (506)
Q Consensus 439 ~~~i~~-l~Y~-~~e~~~SDHrPV~a~F~v 466 (506)
...... ..+. ..+...|||+||.+.+.+
T Consensus 197 ~~l~~~v~~~~v~~~~~~SDH~~v~~~l~~ 226 (228)
T d1wdua_ 197 EDMLDLIDGWRVDEDLVSSDHNGMVFNIRL 226 (228)
T ss_dssp GGGBTTEEEEEECTTSSSSSBCCEEEEECC
T ss_pred chHhhhceEEEECCCCCCCCchHeEEEEEE
Confidence 643211 1111 234568999999887654
No 6
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]}
Probab=98.00 E-value=3.7e-05 Score=68.92 Aligned_cols=36 Identities=36% Similarity=0.529 Sum_probs=23.2
Q ss_pred EEEeeCCCCCCCCC----CCcccccCCCCCCcEEEEeeEEEE
Q 010619 45 AATWNVGGKTPSNS----LNLEDFLEVECSADIYVCGFQEIV 82 (506)
Q Consensus 45 vgTWNV~g~~p~~~----ldl~~wl~~~~~~DiyviGfQEiV 82 (506)
|+||||+|.....+ ..+...+.....|| ||+|||+-
T Consensus 7 v~TwNi~~~~~~~~~~~~~~~~~~~~~~~~~D--Ii~LQEv~ 46 (261)
T d1sr4b_ 7 VATWNLQGSSAVNESKWNINVRQLLSGEQGAD--ILMVQEAG 46 (261)
T ss_dssp EEEEECCCCSSSSHHHHHHHHHHHHCSTTCCS--EEEEESCC
T ss_pred EEEEeCCcCCCCccccccHHHHHHHHhcCCCC--EEEEEccC
Confidence 89999998654332 11223344467899 58999974
No 7
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]}
Probab=97.51 E-value=0.00033 Score=63.27 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=35.9
Q ss_pred CCceEEEEEEEEeceEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcccccccEEEeccccc
Q 010619 277 GNKGCTSISMSVYNTSFCFVCCHLASGEKEGDELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHDRVIWLGDLNY 355 (506)
Q Consensus 277 GNKGaVavr~~l~~ts~cFVn~HLaAg~~~~~~~rRN~D~~~Il~~~~F~~~~~~~~~~~~~~~i~dhD~vfw~GDLNY 355 (506)
...+.+.+.+ ..+.++|+||.++... +..++.+.+..+.+.+.- .......++++||||.
T Consensus 118 ~~r~~~~~~~----~~~~v~n~Hl~~~~~~-~~~~~~~~~~~~~~~~~~--------------~~~~~~~~iv~GDfN~ 177 (250)
T d2f1na1 118 GGRPLLGIRI----GNDAFFTAHAIAMRNN-DAPALVEEVYNFFRDSRD--------------PVHQALNWMILGDFNR 177 (250)
T ss_dssp TCCCEEEEEE----TTEEEEEEECCSSSSC-SHHHHHHHHHHHHHTCSS--------------HHHHTCEEEEEEECSS
T ss_pred cccceeeEee----ceEEEEEEEcCCCCch-hHHHHHHHHHHHHHHHHh--------------hhccCCceEEecccCc
Confidence 3455555543 4678999999987543 344454555555443210 1112357999999995
No 8
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.23 E-value=0.0014 Score=58.36 Aligned_cols=24 Identities=4% Similarity=-0.013 Sum_probs=19.8
Q ss_pred EEEEEEEEeceEEEEEeecCCCCC
Q 010619 281 CTSISMSVYNTSFCFVCCHLASGE 304 (506)
Q Consensus 281 aVavr~~l~~ts~cFVn~HLaAg~ 304 (506)
.+.+.+.+.+..++++|+|+..+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~y~~~~~ 118 (236)
T d1vyba_ 95 YIMVKGSIQQEELTILNIYAPNTG 118 (236)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSS
T ss_pred ceeeeeeeccCcceeEEecccccc
Confidence 456777888999999999998764
No 9
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]}
Probab=95.69 E-value=0.0035 Score=53.60 Aligned_cols=48 Identities=19% Similarity=0.312 Sum_probs=28.3
Q ss_pred eEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcccccccEEEecccccee
Q 010619 291 TSFCFVCCHLASGEKEGDELKRNADVAEILKSTQFPKICKGPNPRTAPERIIDHDRVIWLGDLNYRV 357 (506)
Q Consensus 291 ts~cFVn~HLaAg~~~~~~~rRN~D~~~Il~~~~F~~~~~~~~~~~~~~~i~dhD~vfw~GDLNYRI 357 (506)
..|.+++.|+.... ...|.+....+++.+.-. .....+|++||||-..
T Consensus 126 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~---------------~~~~~~iv~GDfN~~~ 173 (260)
T d2a40b1 126 KEFAIVALHSAPSD----AVAEINSLYDVYLDVQQK---------------WHLNDVMLMGDFNADC 173 (260)
T ss_dssp SEEEEEECCCCGGG----HHHHHHHHHHHHHHHHHH---------------HCCCCEEEEEECCCST
T ss_pred eEEEEEeeccccch----hhHHHHHHHHHHHHHHhh---------------ccCCCEEEcccccCCc
Confidence 46778888887643 334555555555443210 0123589999999654
No 10
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]}
Probab=91.87 E-value=0.0082 Score=52.02 Aligned_cols=34 Identities=26% Similarity=0.208 Sum_probs=21.9
Q ss_pred CcceeecCC---Cceeeeecc---CCCccCCCcccccEEE
Q 010619 432 CDRILWRGN---GIEQLSYIR---GESRFSDHRPVCAVFS 465 (506)
Q Consensus 432 cDRIL~~~~---~i~~l~Y~~---~e~~~SDHrPV~a~F~ 465 (506)
.|.||+... .+....+.. .....|||.||.|.|.
T Consensus 228 IDyI~~s~~l~~~~~~~~i~~~~~~~~~~SDH~PV~a~~~ 267 (268)
T d1akoa_ 228 IDLLLASQPLAECCVETGIDYEIRSMEKPSDHAPVWATFR 267 (268)
T ss_dssp CEEEEEEHHHHTTEEEEEECHHHHTSSSCCSBCCEEEEEC
T ss_pred EEEEEeChHHhhhheEEEEeccccCCCCCCCcccEEEEEE
Confidence 799998653 222222221 3455799999999874
No 11
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=90.06 E-value=0.018 Score=51.66 Aligned_cols=39 Identities=23% Similarity=0.310 Sum_probs=23.9
Q ss_pred eeEEEEEEEeeCCCC-CCCCCCCcccccCCCCCCcEEEEeeEEE
Q 010619 39 QRLRIYAATWNVGGK-TPSNSLNLEDFLEVECSADIYVCGFQEI 81 (506)
Q Consensus 39 ~~~rifvgTWNV~g~-~p~~~ldl~~wl~~~~~~DiyviGfQEi 81 (506)
+.-++=|.||||||. ..... .+-+||.. ..||| |||||+
T Consensus 15 ~~~~mki~S~NvnGlr~~~~~-~~~~~i~~-~~pDI--i~LQE~ 54 (275)
T d1hd7a_ 15 KPATLKICSWNVDGLRAWIKK-KGLDWVKE-EAPDI--LCLQET 54 (275)
T ss_dssp CBCCEEEEEEECSSHHHHHHT-THHHHHHH-HCCSE--EEEECC
T ss_pred CCCcEEEEEEEeccHHhhhhc-cHHHHHHh-CCCCE--EEEEcc
Confidence 333466899999983 21111 13467753 35896 678995
No 12
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=88.10 E-value=0.095 Score=46.67 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=20.7
Q ss_pred CcceeecCCC---ceeeeeccCCCccCCCcccccEEE
Q 010619 432 CDRILWRGNG---IEQLSYIRGESRFSDHRPVCAVFS 465 (506)
Q Consensus 432 cDRIL~~~~~---i~~l~Y~~~e~~~SDHrPV~a~F~ 465 (506)
.|.||....- +....+ ..+...|||.||.+.+.
T Consensus 239 IDyi~vs~~l~~~v~~~~i-~~~~~~SDH~PV~v~l~ 274 (275)
T d1hd7a_ 239 LDYFLLSHSLLPALCDSKI-RSKALGSDHCPITLYLA 274 (275)
T ss_dssp CEEEEECGGGGGGEEEEEE-CTTCCSSSBCCEEEEEC
T ss_pred eEEEEeChHHhhheeEEEE-CCCCCCCCcccEEEEEE
Confidence 6888876432 112222 23456799999998865
No 13
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]}
Probab=87.04 E-value=0.022 Score=50.03 Aligned_cols=36 Identities=22% Similarity=0.381 Sum_probs=22.7
Q ss_pred EEEEEeeCCCCC-CCCCCCcccccCCCCCCcEEEEeeEEE
Q 010619 43 IYAATWNVGGKT-PSNSLNLEDFLEVECSADIYVCGFQEI 81 (506)
Q Consensus 43 ifvgTWNV~g~~-p~~~ldl~~wl~~~~~~DiyviGfQEi 81 (506)
+=|+||||+|-. +...-.|.+|+.. ..||| |+|||+
T Consensus 6 ~kv~s~Nv~g~~~~~~~~~i~~~i~~-~~~DI--i~LQE~ 42 (236)
T d1vyba_ 6 ITILTLNINGLNSAIKRHRLASWIKS-QDPSV--CCIQET 42 (236)
T ss_dssp EEEEEEECSCCCSHHHHHHHHHHHHH-HCCSE--EEEECC
T ss_pred eEEEEEEcCCccchhhHHHHHHHHHH-CCCeE--EEEEcc
Confidence 558999998762 1111234666653 35886 678995
No 14
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]}
Probab=84.53 E-value=0.028 Score=47.60 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=19.6
Q ss_pred EEEEeeCCCCCC--CCCCCcccccCC-CCCCcEEEEeeEEE
Q 010619 44 YAATWNVGGKTP--SNSLNLEDFLEV-ECSADIYVCGFQEI 81 (506)
Q Consensus 44 fvgTWNV~g~~p--~~~ldl~~wl~~-~~~~DiyviGfQEi 81 (506)
=|+||||.+-.. ...-+.-++|.. -..|| ||+|||+
T Consensus 2 rI~s~Ni~~~~~~~~~~~~~~~~l~~~i~~~D--Ii~LQEv 40 (260)
T d2a40b1 2 KIAAFNIRTFGETKMSNATLASYIVRIVRRYD--IVLIQEV 40 (260)
T ss_dssp EEEEEEEEEESHHHHHSHHHHHHHHHHHTTCS--EEEEEEE
T ss_pred EEEEEeCCccCCCccccHHHHHHHHHHcCCCC--EEEEEee
Confidence 379999974211 111112334421 13689 6889996
No 15
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]}
Probab=79.19 E-value=0.31 Score=41.46 Aligned_cols=33 Identities=30% Similarity=0.502 Sum_probs=20.9
Q ss_pred EEEeeCCCCCCCCCCCcccccCCCCCCcEEEEeeEEE
Q 010619 45 AATWNVGGKTPSNSLNLEDFLEVECSADIYVCGFQEI 81 (506)
Q Consensus 45 vgTWNV~g~~p~~~ldl~~wl~~~~~~DiyviGfQEi 81 (506)
|.||||+|..-... .|.+||. +..|| ||+|||+
T Consensus 3 i~S~NvnG~r~r~~-~i~~~i~-~~~~D--Ii~LQEv 35 (268)
T d1akoa_ 3 FVSFNINGLRARPH-QLEAIVE-KHQPD--VIGLQET 35 (268)
T ss_dssp EEEEECSCGGGCHH-HHHHHHH-HHCCS--EEEEECC
T ss_pred EEEEEeCCHHHhHH-HHHHHHH-HCCCC--EEEEEee
Confidence 68999998321111 1466764 34589 5789995
No 16
>d2fvta1 c.103.1.1 (A:1-127) Hypothetical protein RPA2829 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=24.92 E-value=24 Score=28.61 Aligned_cols=30 Identities=13% Similarity=0.319 Sum_probs=19.5
Q ss_pred EEeeCCCCCCCCCCCcccc---cCCCCCCcEEEEee
Q 010619 46 ATWNVGGKTPSNSLNLEDF---LEVECSADIYVCGF 78 (506)
Q Consensus 46 gTWNV~g~~p~~~ldl~~w---l~~~~~~DiyviGf 78 (506)
-.||+..- ++++++++ +.....|||++||-
T Consensus 43 ~~w~~~~~---~~l~~~~l~~l~~l~~~peilliGt 75 (127)
T d2fvta1 43 WGWDVTKP---EQIDRYSLQRVFDNANAIDTLIVGT 75 (127)
T ss_dssp EEESCCST---TCCCTTTTHHHHHTTTSCSEEEEEC
T ss_pred ecCCCCCc---ccCCHHHHHHHHhcCCCCCEEEEec
Confidence 35987654 33544444 43467899999995
No 17
>d1hnra_ a.155.1.1 (A:) H1 protein (H-NS) {Escherichia coli [TaxId: 562]}
Probab=23.71 E-value=15 Score=25.39 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=15.4
Q ss_pred CCcccc-cCCC--CCCCCccccCCCCccCcccCc
Q 010619 403 APTYKY-SHNS--DCYAGETVKSKKKRRTPAWCD 433 (506)
Q Consensus 403 ~PTYKy-~~gs--d~Yd~~~~~ss~K~R~PSWcD 433 (506)
||-|+| +++- ..+. ..-|.|.|--
T Consensus 4 p~KY~y~~~~g~~~tWT-------GrGR~P~w~~ 30 (47)
T d1hnra_ 4 PAKYSYVDENGETKTWT-------GQGRTPAVIK 30 (47)
T ss_dssp SCCBEECCSSCCCEECC-------TTSSCCSHHH
T ss_pred CCcccccCCCCCcceee-------cCCcCCHHHH
Confidence 788999 4532 3333 3569998853
No 18
>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.10 E-value=67 Score=24.17 Aligned_cols=23 Identities=13% Similarity=0.416 Sum_probs=19.8
Q ss_pred eeeecCcchHHHHHHHHHHHhCC
Q 010619 89 VLVIEDNEPAAKWLALIHQALNR 111 (506)
Q Consensus 89 vl~~ED~~p~~kW~~lI~~aLN~ 111 (506)
.|.+|+.+-...|...|.+|...
T Consensus 89 ~f~A~s~~e~~~Wv~al~~a~~~ 111 (126)
T d1wi1a_ 89 IFASDDEQDRILWVQAMYRATGQ 111 (126)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTC
T ss_pred EEEECCHHHHHHHHHHHHHHHHh
Confidence 56688888899999999999864
No 19
>d1s0yb_ d.80.1.1 (B:) Trans-3-chloroacrylic acid dehalogenase beta-subunit, CaaD2 {Pseudomonas pavonaceae [TaxId: 47881]}
Probab=20.61 E-value=37 Score=23.37 Aligned_cols=25 Identities=20% Similarity=0.595 Sum_probs=19.8
Q ss_pred EEeecCCCCCCCccHHHHHHHHHHHHHh
Q 010619 295 FVCCHLASGEKEGDELKRNADVAEILKS 322 (506)
Q Consensus 295 FVn~HLaAg~~~~~~~rRN~D~~~Il~~ 322 (506)
||-||.+.|-. ..||.+-..+|+.-
T Consensus 2 fiechi~~gls---~ar~~ql~rdii~v 26 (55)
T d1s0yb_ 2 FIECHIATGLS---VARKQQLIRDVIDV 26 (55)
T ss_dssp EEEEEEETTCC---HHHHHHHHHHHHHH
T ss_pred ceeeeehhhhh---HHHHHHHHHHHHHH
Confidence 89999999975 57787777777654
Done!