Query 010621
Match_columns 506
No_of_seqs 175 out of 322
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 02:39:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010621.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010621hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03110 SBP: SBP domain; Int 100.0 3.8E-38 8.3E-43 262.1 -1.2 78 179-256 1-78 (79)
2 PRK00241 nudC NADH pyrophospha 37.4 15 0.00032 36.9 0.8 36 192-228 92-127 (256)
3 PF14901 Jiv90: Cleavage induc 37.2 14 0.00031 32.8 0.7 18 217-234 26-43 (94)
4 PF09297 zf-NADH-PPase: NADH p 32.4 17 0.00036 25.6 0.2 31 197-228 1-31 (32)
5 COG2816 NPY1 NTP pyrophosphohy 25.5 28 0.00061 36.2 0.6 36 192-228 104-139 (279)
6 TIGR03831 YgiT_finger YgiT-typ 20.5 49 0.0011 23.8 0.9 20 207-226 21-40 (46)
7 PF14776 UNC-79: Cation-channe 20.1 66 0.0014 36.3 2.1 28 199-226 262-298 (525)
8 PRK06424 transcription factor; 19.1 65 0.0014 30.3 1.6 25 209-233 14-39 (144)
9 PF06487 SAP18: Sin3 associate 18.8 31 0.00068 31.6 -0.6 25 198-234 6-30 (120)
10 PF14803 Nudix_N_2: Nudix N-te 17.1 56 0.0012 24.1 0.5 27 202-228 3-32 (34)
No 1
>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain []. Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.
Probab=100.00 E-value=3.8e-38 Score=262.14 Aligned_cols=78 Identities=64% Similarity=1.145 Sum_probs=63.2
Q ss_pred ccccCCCcccccCCcchhccccccccccCCCeEEECCeeehhhhhhcccccccccccchhHHHHHHhhhhhhhcCCCC
Q 010621 179 LCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRSCRRRLAGHNERRRKPQF 256 (506)
Q Consensus 179 ~CQV~GC~~dLs~~k~YhrRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFDg~kRSCR~rL~~hn~RRRk~q~ 256 (506)
+||||||++||+.+|.||+||||||.|++||+|+++|.++||||||+|||+|+||||+|||||++|++||+||||+++
T Consensus 1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~ 78 (79)
T PF03110_consen 1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ 78 (79)
T ss_dssp C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence 599999999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=37.41 E-value=15 Score=36.95 Aligned_cols=36 Identities=11% Similarity=0.328 Sum_probs=28.1
Q ss_pred CcchhccccccccccCCCeEEECCeeehhhhhhcccc
Q 010621 192 SKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFH 228 (506)
Q Consensus 192 ~k~YhrRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH 228 (506)
+-.+|++||-|..+-....+ ..+...|.|..|++.|
T Consensus 92 l~~w~~~~~fC~~CG~~~~~-~~~~~~~~C~~c~~~~ 127 (256)
T PRK00241 92 LAEFYRSHRFCGYCGHPMHP-SKTEWAMLCPHCRERY 127 (256)
T ss_pred HHHHhhcCccccccCCCCee-cCCceeEECCCCCCEE
Confidence 34799999999998876554 4566678999999655
No 3
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=37.16 E-value=14 Score=32.82 Aligned_cols=18 Identities=39% Similarity=0.665 Sum_probs=14.3
Q ss_pred eehhhhhhcccccccccc
Q 010621 217 EQRFCQQCSRFHLLAEFD 234 (506)
Q Consensus 217 ~qRFCQQCsrFH~L~eFD 234 (506)
.-|+||+|..+|+..+=|
T Consensus 26 ~AR~C~~C~~~H~Ak~gD 43 (94)
T PF14901_consen 26 AARYCQDCKIRHPAKEGD 43 (94)
T ss_pred hhHhHHHhhhhcccccCC
Confidence 469999999999865544
No 4
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=32.39 E-value=17 Score=25.62 Aligned_cols=31 Identities=26% Similarity=0.563 Sum_probs=18.3
Q ss_pred ccccccccccCCCeEEECCeeehhhhhhcccc
Q 010621 197 KRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFH 228 (506)
Q Consensus 197 rRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH 228 (506)
++||-|... -+|++.+.+...|-|+.|+..|
T Consensus 1 ~~~rfC~~C-G~~t~~~~~g~~r~C~~Cg~~~ 31 (32)
T PF09297_consen 1 RNHRFCGRC-GAPTKPAPGGWARRCPSCGHEH 31 (32)
T ss_dssp HTTSB-TTT---BEEE-SSSS-EEESSSS-EE
T ss_pred CCCcccCcC-CccccCCCCcCEeECCCCcCEe
Confidence 356777654 5677777788888899888644
No 5
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=25.50 E-value=28 Score=36.20 Aligned_cols=36 Identities=22% Similarity=0.471 Sum_probs=29.5
Q ss_pred CcchhccccccccccCCCeEEECCeeehhhhhhcccc
Q 010621 192 SKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFH 228 (506)
Q Consensus 192 ~k~YhrRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH 228 (506)
+-.+|++||.|..+ -+++...+|...|-|++|+.-|
T Consensus 104 l~~w~~~~RFCg~C-G~~~~~~~~g~~~~C~~cg~~~ 139 (279)
T COG2816 104 LLEWYRSHRFCGRC-GTKTYPREGGWARVCPKCGHEH 139 (279)
T ss_pred HHHHHhhCcCCCCC-CCcCccccCceeeeCCCCCCcc
Confidence 44689999999864 6778888999999999998544
No 6
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=20.48 E-value=49 Score=23.80 Aligned_cols=20 Identities=15% Similarity=0.453 Sum_probs=17.3
Q ss_pred CCCeEEECCeeehhhhhhcc
Q 010621 207 KTPKVIVNGNEQRFCQQCSR 226 (506)
Q Consensus 207 kA~~V~v~G~~qRFCQQCsr 226 (506)
+.-.+++.+.+.++|.+|+.
T Consensus 21 ~~~~~~i~~vp~~~C~~CGE 40 (46)
T TIGR03831 21 GGELIVIENVPALVCPQCGE 40 (46)
T ss_pred CCEEEEEeCCCccccccCCC
Confidence 55678899999999999984
No 7
>PF14776 UNC-79: Cation-channel complex subunit UNC-79
Probab=20.10 E-value=66 Score=36.27 Aligned_cols=28 Identities=32% Similarity=0.622 Sum_probs=20.8
Q ss_pred ccccccccCCCeEEE---------CCeeehhhhhhcc
Q 010621 199 HKVCDVHSKTPKVIV---------NGNEQRFCQQCSR 226 (506)
Q Consensus 199 hrVCe~H~kA~~V~v---------~G~~qRFCQQCsr 226 (506)
.|-|..+.|..+|+- ++++.|+||||..
T Consensus 262 nK~C~S~~k~AvvtCFS~eCt~~~gn~PiRlC~~Ch~ 298 (525)
T PF14776_consen 262 NKNCRSSDKSAVVTCFSTECTSYNGNRPIRLCQQCHS 298 (525)
T ss_pred CCCCcCCCCCeEEEEechhhccccCCCcchhHHHHhh
Confidence 456666777776653 7888999999963
No 8
>PRK06424 transcription factor; Provisional
Probab=19.07 E-value=65 Score=30.26 Aligned_cols=25 Identities=28% Similarity=0.711 Sum_probs=20.3
Q ss_pred CeEEECCeeehhhhhhcccc-ccccc
Q 010621 209 PKVIVNGNEQRFCQQCSRFH-LLAEF 233 (506)
Q Consensus 209 ~~V~v~G~~qRFCQQCsrFH-~L~eF 233 (506)
-.|+|+|.+.+-|..|.+|= ++..+
T Consensus 14 ~~v~ieg~~l~vC~~Ca~~G~~v~~~ 39 (144)
T PRK06424 14 TKVMIDGAILNVCDDCAKFGTPVIEH 39 (144)
T ss_pred eEEEEcCeeeehhHHHHHcCCccccc
Confidence 47899999999999999994 34444
No 9
>PF06487 SAP18: Sin3 associated polypeptide p18 (SAP18); InterPro: IPR010516 This family consists of several eukaryotic Sin3 associated polypeptide p18 (SAP18) sequences. SAP18 is known to be a component of the Sin3-containing complex, which is responsible for the repression of transcription via the modification of histone polypeptides []. SAP18 is also present in the ASAP complex which is thought to be involved in the regulation of splicing during the execution of programmed cell death [].; PDB: 2HDE_A 4A90_A 4A6Q_A 4A8X_C.
Probab=18.76 E-value=31 Score=31.60 Aligned_cols=25 Identities=32% Similarity=0.631 Sum_probs=15.2
Q ss_pred cccccccccCCCeEEECCeeehhhhhhcccccccccc
Q 010621 198 RHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFD 234 (506)
Q Consensus 198 RhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFD 234 (506)
|.++|+.+.+ -||.+ ++||.++||.
T Consensus 6 RektcPfLLR-----------vF~~~-g~~h~~~dF~ 30 (120)
T PF06487_consen 6 REKTCPFLLR-----------VFYRN-GRHHRLDDFS 30 (120)
T ss_dssp CCCS--EEEE-----------EEESS-SS---GGGCG
T ss_pred cCCCCCeEEE-----------EEEec-CCCCCHHHcc
Confidence 7788887543 47666 8999999998
No 10
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=17.06 E-value=56 Score=24.06 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=13.0
Q ss_pred cccccCCCeEE-E--CCeeehhhhhhcccc
Q 010621 202 CDVHSKTPKVI-V--NGNEQRFCQQCSRFH 228 (506)
Q Consensus 202 Ce~H~kA~~V~-v--~G~~qRFCQQCsrFH 228 (506)
|+.+-...... . ++++..+|..|+..|
T Consensus 3 C~~CG~~l~~~ip~gd~r~R~vC~~Cg~Ih 32 (34)
T PF14803_consen 3 CPQCGGPLERRIPEGDDRERLVCPACGFIH 32 (34)
T ss_dssp -TTT--B-EEE--TT-SS-EEEETTTTEEE
T ss_pred cccccChhhhhcCCCCCccceECCCCCCEE
Confidence 44444444333 3 667777888888766
Done!