Query 010621
Match_columns 506
No_of_seqs 175 out of 322
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 10:43:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010621.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010621hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ul4_A SPL4, squamosa promoter 100.0 1.9E-41 6.4E-46 288.5 -0.4 88 173-260 4-91 (94)
2 1ul5_A SPL7, squamosa promoter 100.0 3.3E-40 1.1E-44 278.1 -1.2 83 176-258 2-84 (88)
3 1wj0_A Squamosa promoter-bindi 100.0 4.4E-31 1.5E-35 209.1 2.1 59 176-234 2-60 (60)
4 2d8r_A THAP domain-containing 35.2 18 0.00061 29.9 2.1 15 175-189 7-21 (99)
5 1vk6_A NADH pyrophosphatase; 1 24.6 19 0.00063 34.7 0.5 36 192-228 100-135 (269)
6 2lau_A THAP domain-containing 19.1 53 0.0018 25.7 2.0 10 178-187 5-14 (81)
7 2jm3_A Hypothetical protein; z 13.5 1.1E+02 0.0039 25.1 2.8 9 178-186 5-13 (91)
8 4a6q_A Histone deacetylase com 12.7 39 0.0013 30.9 -0.3 28 196-234 20-47 (143)
9 1gh9_A 8.3 kDa protein (gene M 12.5 75 0.0026 25.7 1.3 27 201-230 6-32 (71)
10 3dzy_D Peroxisome proliferator 11.3 49 0.0017 33.6 -0.2 24 176-199 49-80 (419)
No 1
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=1.9e-41 Score=288.53 Aligned_cols=88 Identities=59% Similarity=1.006 Sum_probs=80.4
Q ss_pred CCCCCCccccCCCcccccCCcchhccccccccccCCCeEEECCeeehhhhhhcccccccccccchhHHHHHHhhhhhhhc
Q 010621 173 SCSQTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRSCRRRLAGHNERRR 252 (506)
Q Consensus 173 ~~~~~~~CQV~GC~~dLs~~k~YhrRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFDg~kRSCR~rL~~hn~RRR 252 (506)
.+++.++|||+||++||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||++|||||+||++||+|||
T Consensus 4 ~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RRR 83 (94)
T 1ul4_A 4 GSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRR 83 (94)
T ss_dssp ----CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCC
T ss_pred CCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHhc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 010621 253 KPQFNIHS 260 (506)
Q Consensus 253 k~q~~~~~ 260 (506)
|++++.+.
T Consensus 84 k~~~~~~~ 91 (94)
T 1ul4_A 84 KSSGESGP 91 (94)
T ss_dssp SCCCC---
T ss_pred cCCCCcCC
Confidence 99998753
No 2
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=3.3e-40 Score=278.08 Aligned_cols=83 Identities=46% Similarity=0.943 Sum_probs=78.9
Q ss_pred CCCccccCCCcccccCCcchhccccccccccCCCeEEECCeeehhhhhhcccccccccccchhHHHHHHhhhhhhhcCCC
Q 010621 176 QTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRSCRRRLAGHNERRRKPQ 255 (506)
Q Consensus 176 ~~~~CQV~GC~~dLs~~k~YhrRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFDg~kRSCR~rL~~hn~RRRk~q 255 (506)
..++|||+||++||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||++|||||+||++||+||||++
T Consensus 2 ~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~ 81 (88)
T 1ul5_A 2 SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKP 81 (88)
T ss_dssp -CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCS
T ss_pred CCCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred CCC
Q 010621 256 FNI 258 (506)
Q Consensus 256 ~~~ 258 (506)
.+.
T Consensus 82 ~~~ 84 (88)
T 1ul5_A 82 VDK 84 (88)
T ss_dssp CSS
T ss_pred ccC
Confidence 664
No 3
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=99.96 E-value=4.4e-31 Score=209.11 Aligned_cols=59 Identities=61% Similarity=1.111 Sum_probs=57.2
Q ss_pred CCCccccCCCcccccCCcchhccccccccccCCCeEEECCeeehhhhhhcccccccccc
Q 010621 176 QTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFD 234 (506)
Q Consensus 176 ~~~~CQV~GC~~dLs~~k~YhrRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFD 234 (506)
+.++|||+||++||+.+|+|||||||||.|+|||+|+|+|+++||||||+|||+|+|||
T Consensus 2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60 (60)
T ss_dssp -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence 46899999999999999999999999999999999999999999999999999999998
No 4
>2d8r_A THAP domain-containing protein 2; NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.16
Probab=35.18 E-value=18 Score=29.91 Aligned_cols=15 Identities=20% Similarity=0.527 Sum_probs=10.8
Q ss_pred CCCCccccCCCcccc
Q 010621 175 SQTPLCQVYGCNKDL 189 (506)
Q Consensus 175 ~~~~~CQV~GC~~dL 189 (506)
.....|-|.||...-
T Consensus 7 ~M~~~C~v~gC~n~~ 21 (99)
T 2d8r_A 7 GMPTNCAAAGCATTY 21 (99)
T ss_dssp CCCCCCCSSSCCCSC
T ss_pred CCCCeeEeCCCCCCC
Confidence 345579999998653
No 5
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=24.57 E-value=19 Score=34.74 Aligned_cols=36 Identities=14% Similarity=0.298 Sum_probs=28.2
Q ss_pred CcchhccccccccccCCCeEEECCeeehhhhhhcccc
Q 010621 192 SKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFH 228 (506)
Q Consensus 192 ~k~YhrRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH 228 (506)
+..++++++-|..+- ++.+..++...+.|..|+..|
T Consensus 100 l~~w~~~~~fC~~CG-~~~~~~~~~~~~~C~~C~~~~ 135 (269)
T 1vk6_A 100 LAEFYRSHKYCGYCG-HEMYPSKTEWAMLCSHCRERY 135 (269)
T ss_dssp HHHHHHTTSBCTTTC-CBEEECSSSSCEEESSSSCEE
T ss_pred HHhhhhcCCccccCC-CcCccCCCceeeeCCCCCCEe
Confidence 346889999998875 455667888899999998654
No 6
>2lau_A THAP domain-containing protein 11; zinc finger, protein-DNA complex, DNA binding domain, transc factor, CCCH, transcription-DNA complex; NMR {Homo sapiens}
Probab=19.10 E-value=53 Score=25.73 Aligned_cols=10 Identities=40% Similarity=0.727 Sum_probs=6.9
Q ss_pred CccccCCCcc
Q 010621 178 PLCQVYGCNK 187 (506)
Q Consensus 178 ~~CQV~GC~~ 187 (506)
..|-|.||..
T Consensus 5 ~~C~v~gC~n 14 (81)
T 2lau_A 5 FTCCVPGCYN 14 (81)
T ss_dssp CSCCCSSSSS
T ss_pred CEEEeCCCcC
Confidence 4677888864
No 7
>2jm3_A Hypothetical protein; zinc finger, domain, metal binding protein; NMR {Caenorhabditis elegans}
Probab=13.46 E-value=1.1e+02 Score=25.15 Aligned_cols=9 Identities=22% Similarity=0.704 Sum_probs=6.0
Q ss_pred CccccCCCc
Q 010621 178 PLCQVYGCN 186 (506)
Q Consensus 178 ~~CQV~GC~ 186 (506)
..|-|.||.
T Consensus 5 ~~C~V~gC~ 13 (91)
T 2jm3_A 5 TTCGFPNCK 13 (91)
T ss_dssp CCCCCTTCC
T ss_pred CeEEeCCCc
Confidence 367777774
No 8
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=12.72 E-value=39 Score=30.88 Aligned_cols=28 Identities=29% Similarity=0.521 Sum_probs=22.9
Q ss_pred hccccccccccCCCeEEECCeeehhhhhhcccccccccc
Q 010621 196 HKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFD 234 (506)
Q Consensus 196 hrRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFD 234 (506)
--|.++|+.+.+ -||.+=++||.++||.
T Consensus 20 idRektcPfLLR-----------vF~~~ng~hh~~~eF~ 47 (143)
T 4a6q_A 20 IDREKTCPLLLR-----------VFTTNNGRHHRMDEFS 47 (143)
T ss_dssp CCGGGSCCEEEE-----------EEEESSSSCCCGGGGC
T ss_pred ccccCCCCeEEE-----------EEecCCCCCCCHHHcc
Confidence 458999999754 4887767999999997
No 9
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=12.48 E-value=75 Score=25.69 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=20.6
Q ss_pred ccccccCCCeEEECCeeehhhhhhcccccc
Q 010621 201 VCDVHSKTPKVIVNGNEQRFCQQCSRFHLL 230 (506)
Q Consensus 201 VCe~H~kA~~V~v~G~~qRFCQQCsrFH~L 230 (506)
.|+ ..+..++-+|....-|+ ||+-|.+
T Consensus 6 ~C~--C~~~~~~~~~~kT~~C~-CG~~~~~ 32 (71)
T 1gh9_A 6 RCD--CGRALYSREGAKTRKCV-CGRTVNV 32 (71)
T ss_dssp EET--TSCCEEEETTCSEEEET-TTEEEEC
T ss_pred ECC--CCCEEEEcCCCcEEECC-CCCeeee
Confidence 477 55567888899999998 9965544
No 10
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=11.27 E-value=49 Score=33.64 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=13.0
Q ss_pred CCCccccCCCcc--------cccCCcchhccc
Q 010621 176 QTPLCQVYGCNK--------DLSSSKDYHKRH 199 (506)
Q Consensus 176 ~~~~CQV~GC~~--------dLs~~k~YhrRh 199 (506)
....|.|.|=.+ .+.++|.||||.
T Consensus 49 ~~~~C~vC~~~~~g~hygv~~C~~C~~FFrR~ 80 (419)
T 3dzy_D 49 MAIECRVCGDKASGFHYGVHACEGCKGFFRRT 80 (419)
T ss_dssp -CCCCSSSCSCCCSBCSSSBCCHHHHHHHHHH
T ss_pred CCCcCeECCCcCCCCccCcccchhhhHHHccc
Confidence 345699854221 133467778774
Done!