Query 010623
Match_columns 506
No_of_seqs 419 out of 3126
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 02:41:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010623.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010623hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1298 Squalene monooxygenase 100.0 1.9E-70 4.2E-75 509.2 44.4 450 55-504 40-493 (509)
2 PLN02985 squalene monooxygenas 100.0 9.7E-66 2.1E-70 531.3 54.1 483 4-501 2-490 (514)
3 PTZ00367 squalene epoxidase; P 100.0 6.4E-59 1.4E-63 482.1 49.0 432 60-505 33-531 (567)
4 PRK06126 hypothetical protein; 100.0 8.5E-49 1.8E-53 413.5 34.2 407 59-480 6-479 (545)
5 COG0654 UbiH 2-polyprenyl-6-me 100.0 2.2E-47 4.8E-52 385.5 32.4 364 60-438 2-372 (387)
6 PRK08013 oxidoreductase; Provi 100.0 4.2E-47 9.1E-52 385.6 32.4 377 60-450 3-391 (400)
7 PRK08850 2-octaprenyl-6-methox 100.0 4.8E-47 1E-51 386.2 31.8 379 59-451 3-392 (405)
8 PRK08132 FAD-dependent oxidore 100.0 5.7E-47 1.2E-51 399.2 32.8 402 59-478 22-461 (547)
9 PRK06183 mhpA 3-(3-hydroxyphen 100.0 1.1E-46 2.3E-51 396.1 32.5 404 58-477 8-445 (538)
10 PRK08244 hypothetical protein; 100.0 2.9E-46 6.3E-51 389.5 32.1 395 60-478 2-427 (493)
11 TIGR01989 COQ6 Ubiquinone bios 100.0 1.5E-45 3.3E-50 377.8 33.8 371 61-436 1-428 (437)
12 PRK06184 hypothetical protein; 100.0 8.3E-46 1.8E-50 386.7 30.5 395 60-477 3-421 (502)
13 PRK05714 2-octaprenyl-3-methyl 100.0 2E-45 4.3E-50 374.7 31.8 377 60-451 2-395 (405)
14 PRK06617 2-octaprenyl-6-methox 100.0 1.3E-44 2.7E-49 364.2 34.6 351 61-440 2-362 (374)
15 PRK08849 2-octaprenyl-3-methyl 100.0 2.3E-44 4.9E-49 363.8 35.6 362 60-442 3-375 (384)
16 PRK07364 2-octaprenyl-6-methox 100.0 3.3E-44 7.2E-49 367.2 36.0 384 56-451 14-404 (415)
17 PRK08773 2-octaprenyl-3-methyl 100.0 8.3E-45 1.8E-49 368.5 31.0 366 58-438 4-379 (392)
18 PRK06185 hypothetical protein; 100.0 6.7E-44 1.4E-48 363.9 36.1 379 59-445 5-388 (407)
19 PRK08294 phenol 2-monooxygenas 100.0 9.9E-44 2.2E-48 376.4 38.1 350 57-418 29-415 (634)
20 PRK06834 hypothetical protein; 100.0 8.9E-44 1.9E-48 367.2 35.5 390 60-478 3-416 (488)
21 PRK07045 putative monooxygenas 100.0 2.3E-43 4.9E-48 357.5 37.4 359 59-430 4-372 (388)
22 PRK09126 hypothetical protein; 100.0 6.2E-44 1.3E-48 362.5 28.5 366 59-438 2-377 (392)
23 PRK07494 2-octaprenyl-6-methox 100.0 1.9E-43 4.1E-48 358.3 30.6 361 60-439 7-375 (388)
24 PRK07190 hypothetical protein; 100.0 4.7E-43 1E-47 361.4 33.1 335 60-415 5-347 (487)
25 TIGR01988 Ubi-OHases Ubiquinon 100.0 7.4E-43 1.6E-47 354.0 32.7 360 62-435 1-370 (385)
26 PRK08020 ubiF 2-octaprenyl-3-m 100.0 1.4E-42 3E-47 352.4 33.8 364 60-439 5-379 (391)
27 PRK07333 2-octaprenyl-6-methox 100.0 6.1E-43 1.3E-47 356.6 30.8 375 61-451 2-390 (403)
28 TIGR01984 UbiH 2-polyprenyl-6- 100.0 1.1E-42 2.5E-47 352.0 30.2 358 62-437 1-369 (382)
29 PRK08243 4-hydroxybenzoate 3-m 100.0 1.5E-41 3.2E-46 344.2 36.2 358 60-435 2-372 (392)
30 PRK06996 hypothetical protein; 100.0 9E-42 1.9E-46 346.3 33.4 356 59-438 10-382 (398)
31 PRK06753 hypothetical protein; 100.0 4E-41 8.6E-46 339.6 36.9 352 61-434 1-356 (373)
32 PRK07588 hypothetical protein; 100.0 3.1E-41 6.6E-46 342.3 35.1 357 61-435 1-368 (391)
33 PRK07608 ubiquinone biosynthes 100.0 3.8E-41 8.2E-46 341.7 34.7 362 59-436 4-374 (388)
34 PRK06847 hypothetical protein; 100.0 1.1E-40 2.4E-45 336.7 37.5 358 60-434 4-372 (375)
35 PRK05732 2-octaprenyl-6-methox 100.0 3.4E-41 7.3E-46 342.9 31.6 363 59-436 2-377 (395)
36 PF08491 SE: Squalene epoxidas 100.0 5.3E-41 1.1E-45 308.8 29.0 271 212-483 2-275 (276)
37 PRK06475 salicylate hydroxylas 100.0 3.1E-40 6.7E-45 335.5 36.7 354 61-432 3-375 (400)
38 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 5E-40 1.1E-44 332.0 36.4 356 60-432 2-369 (390)
39 PF01494 FAD_binding_3: FAD bi 100.0 2E-41 4.3E-46 339.5 25.7 337 60-407 1-355 (356)
40 PRK08163 salicylate hydroxylas 100.0 5.5E-39 1.2E-43 326.6 35.3 355 58-432 2-371 (396)
41 PRK05868 hypothetical protein; 100.0 5.1E-39 1.1E-43 322.4 33.6 352 61-430 2-366 (372)
42 PRK07538 hypothetical protein; 100.0 6.5E-39 1.4E-43 327.2 34.6 337 61-410 1-361 (413)
43 TIGR03219 salicylate_mono sali 100.0 3.4E-38 7.3E-43 322.1 31.5 344 61-422 1-379 (414)
44 PRK07236 hypothetical protein; 100.0 2.8E-37 6E-42 312.5 34.2 334 59-418 5-378 (386)
45 PLN02927 antheraxanthin epoxid 100.0 2.8E-36 6E-41 314.3 37.0 347 57-414 78-445 (668)
46 KOG2614 Kynurenine 3-monooxyge 100.0 5.7E-34 1.2E-38 271.5 22.4 305 60-378 2-326 (420)
47 PLN00093 geranylgeranyl diphos 100.0 4.2E-32 9.2E-37 276.7 34.9 345 58-430 37-398 (450)
48 TIGR02023 BchP-ChlP geranylger 100.0 3.8E-31 8.2E-36 267.6 36.4 324 61-418 1-338 (388)
49 TIGR02028 ChlP geranylgeranyl 100.0 8.5E-31 1.9E-35 264.9 34.0 346 61-430 1-359 (398)
50 TIGR02032 GG-red-SF geranylger 100.0 7.6E-30 1.7E-34 248.9 28.7 285 61-374 1-295 (295)
51 PRK08255 salicylyl-CoA 5-hydro 100.0 3.4E-30 7.3E-35 279.6 24.9 323 61-417 1-341 (765)
52 KOG3855 Monooxygenase involved 100.0 1.9E-30 4.1E-35 245.2 18.9 371 58-432 34-461 (481)
53 COG0644 FixC Dehydrogenases (f 100.0 6.8E-28 1.5E-32 244.0 33.5 323 59-409 2-333 (396)
54 PRK11445 putative oxidoreducta 100.0 1E-28 2.2E-33 246.2 26.5 306 61-403 2-319 (351)
55 TIGR01790 carotene-cycl lycope 99.9 1.3E-24 2.9E-29 220.4 33.5 306 62-403 1-321 (388)
56 PRK10015 oxidoreductase; Provi 99.9 1.3E-24 2.8E-29 221.6 32.4 341 60-417 5-373 (429)
57 PRK10157 putative oxidoreducta 99.9 1.6E-23 3.5E-28 213.8 30.5 324 60-401 5-356 (428)
58 PLN02697 lycopene epsilon cycl 99.9 8.9E-23 1.9E-27 210.2 34.9 323 58-416 106-455 (529)
59 PF04820 Trp_halogenase: Trypt 99.9 7E-24 1.5E-28 216.7 25.8 336 62-427 1-397 (454)
60 PLN02463 lycopene beta cyclase 99.9 1.6E-21 3.4E-26 198.2 31.7 288 58-378 26-332 (447)
61 TIGR01789 lycopene_cycl lycope 99.9 5.5E-21 1.2E-25 191.0 27.9 297 62-407 1-313 (370)
62 PF05834 Lycopene_cycl: Lycope 99.8 3.9E-19 8.3E-24 178.5 26.5 278 62-376 1-290 (374)
63 PRK04176 ribulose-1,5-biphosph 99.6 1.3E-14 2.9E-19 137.1 14.5 141 60-231 25-181 (257)
64 TIGR00292 thiazole biosynthesi 99.6 6.1E-14 1.3E-18 132.2 14.8 140 60-230 21-177 (254)
65 PF01946 Thi4: Thi4 family; PD 99.5 1E-13 2.2E-18 122.7 12.2 137 60-227 17-169 (230)
66 COG0578 GlpA Glycerol-3-phosph 99.5 1.5E-12 3.2E-17 132.0 21.3 216 59-275 11-282 (532)
67 COG1635 THI4 Ribulose 1,5-bisp 99.5 3.8E-13 8.2E-18 118.1 13.5 139 60-229 30-184 (262)
68 KOG2415 Electron transfer flav 99.5 6.1E-12 1.3E-16 120.1 20.6 302 58-377 74-421 (621)
69 KOG0042 Glycerol-3-phosphate d 99.5 1.1E-12 2.3E-17 129.2 15.2 173 58-231 65-296 (680)
70 PRK01747 mnmC bifunctional tRN 99.4 4.7E-12 1E-16 136.8 20.3 212 1-224 192-464 (662)
71 PRK12266 glpD glycerol-3-phosp 99.4 4.9E-11 1.1E-15 124.6 26.2 169 57-227 3-221 (508)
72 PRK13369 glycerol-3-phosphate 99.4 2.3E-11 5E-16 127.1 23.8 169 57-227 3-220 (502)
73 PRK06481 fumarate reductase fl 99.4 5.7E-12 1.2E-16 131.6 17.7 166 57-229 58-257 (506)
74 COG2081 Predicted flavoprotein 99.4 2.1E-12 4.5E-17 124.3 11.6 145 59-224 2-168 (408)
75 PRK05192 tRNA uridine 5-carbox 99.4 1.4E-11 3E-16 127.6 16.8 149 59-224 3-158 (618)
76 PLN02464 glycerol-3-phosphate 99.4 3E-10 6.4E-15 121.1 26.2 73 158-231 228-305 (627)
77 PF01134 GIDA: Glucose inhibit 99.3 2E-11 4.4E-16 120.0 15.1 147 62-223 1-152 (392)
78 TIGR01377 soxA_mon sarcosine o 99.3 3.8E-10 8.3E-15 114.2 24.6 167 61-234 1-212 (380)
79 PF01266 DAO: FAD dependent ox 99.3 2.4E-11 5.2E-16 121.6 15.5 70 156-231 141-212 (358)
80 PRK07121 hypothetical protein; 99.3 1.1E-10 2.3E-15 122.0 18.3 66 162-229 177-245 (492)
81 PRK11101 glpA sn-glycerol-3-ph 99.3 9.3E-11 2E-15 123.5 17.7 74 157-231 144-220 (546)
82 PLN02661 Putative thiazole syn 99.3 8.5E-11 1.8E-15 113.8 15.3 136 59-224 91-245 (357)
83 PF12831 FAD_oxidored: FAD dep 99.3 2.1E-12 4.5E-17 132.1 4.0 153 62-231 1-157 (428)
84 TIGR01813 flavo_cyto_c flavocy 99.3 7.8E-11 1.7E-15 121.5 14.9 166 62-229 1-198 (439)
85 PF03486 HI0933_like: HI0933-l 99.3 1.1E-10 2.4E-15 117.3 15.2 144 61-224 1-167 (409)
86 PRK08274 tricarballylate dehyd 99.3 7.2E-11 1.6E-15 122.7 14.3 67 162-229 131-198 (466)
87 PRK11259 solA N-methyltryptoph 99.3 1.4E-09 3.1E-14 109.9 23.4 60 158-224 145-205 (376)
88 PF00890 FAD_binding_2: FAD bi 99.2 7.9E-11 1.7E-15 120.7 14.2 63 161-224 140-204 (417)
89 PRK00711 D-amino acid dehydrog 99.2 1.1E-09 2.5E-14 112.2 22.1 61 158-224 197-258 (416)
90 TIGR01373 soxB sarcosine oxida 99.2 1.8E-09 3.9E-14 110.3 23.4 110 158-276 179-291 (407)
91 PRK12409 D-amino acid dehydrog 99.2 2.5E-09 5.3E-14 109.4 23.8 70 159-230 194-266 (410)
92 PRK11728 hydroxyglutarate oxid 99.2 7E-10 1.5E-14 112.7 18.6 69 157-232 144-214 (393)
93 TIGR01320 mal_quin_oxido malat 99.2 3.5E-10 7.6E-15 117.0 15.7 77 156-233 172-251 (483)
94 PRK05257 malate:quinone oxidor 99.2 4.6E-10 1E-14 116.2 15.8 77 156-232 177-256 (494)
95 TIGR01812 sdhA_frdA_Gneg succi 99.2 5.3E-10 1.2E-14 118.8 16.7 64 163-227 130-195 (566)
96 PRK12834 putative FAD-binding 99.2 1.9E-10 4E-15 121.6 12.9 67 163-229 149-233 (549)
97 PRK06854 adenylylsulfate reduc 99.2 5.9E-10 1.3E-14 118.7 16.6 157 59-224 10-196 (608)
98 TIGR01176 fum_red_Fp fumarate 99.2 6E-10 1.3E-14 117.8 16.3 64 162-225 132-197 (580)
99 TIGR00551 nadB L-aspartate oxi 99.2 7.1E-10 1.5E-14 115.5 16.7 65 162-227 128-193 (488)
100 PRK06175 L-aspartate oxidase; 99.2 5.3E-10 1.1E-14 114.5 15.3 161 59-225 3-191 (433)
101 PRK09231 fumarate reductase fl 99.2 6.5E-10 1.4E-14 117.9 16.2 64 163-226 134-199 (582)
102 PRK06452 sdhA succinate dehydr 99.2 5.3E-10 1.1E-14 118.2 14.9 62 163-225 137-200 (566)
103 TIGR00136 gidA glucose-inhibit 99.1 1.3E-09 2.8E-14 112.9 16.2 154 61-230 1-161 (617)
104 COG0579 Predicted dehydrogenas 99.1 7.2E-10 1.6E-14 110.4 13.8 171 59-233 2-222 (429)
105 PRK07843 3-ketosteroid-delta-1 99.1 1.3E-09 2.7E-14 115.3 16.4 64 164-229 210-275 (557)
106 PRK07573 sdhA succinate dehydr 99.1 1.4E-09 3.1E-14 116.2 16.8 59 166-225 174-234 (640)
107 PRK06069 sdhA succinate dehydr 99.1 1.3E-09 2.9E-14 115.8 16.4 169 59-227 4-204 (577)
108 PLN02172 flavin-containing mon 99.1 1.1E-09 2.3E-14 112.6 15.1 158 59-223 9-173 (461)
109 KOG2820 FAD-dependent oxidored 99.1 2.7E-09 5.8E-14 100.0 16.1 175 57-234 4-225 (399)
110 PRK07804 L-aspartate oxidase; 99.1 1.8E-09 3.9E-14 113.7 17.0 163 58-227 14-214 (541)
111 PRK12837 3-ketosteroid-delta-1 99.1 9.4E-10 2E-14 115.2 14.7 66 163-229 174-241 (513)
112 PRK05945 sdhA succinate dehydr 99.1 1.2E-09 2.6E-14 115.9 15.6 63 162-225 135-199 (575)
113 PRK13339 malate:quinone oxidor 99.1 1.5E-09 3.3E-14 111.5 15.7 77 156-233 178-258 (497)
114 PRK12845 3-ketosteroid-delta-1 99.1 3.4E-09 7.3E-14 111.7 18.6 65 163-229 218-284 (564)
115 PRK06263 sdhA succinate dehydr 99.1 1.5E-09 3.2E-14 114.6 16.0 62 162-224 134-198 (543)
116 PRK09078 sdhA succinate dehydr 99.1 2.5E-09 5.5E-14 113.7 17.6 62 163-225 150-214 (598)
117 PTZ00139 Succinate dehydrogena 99.1 2.3E-09 4.9E-14 114.3 16.9 166 59-225 28-231 (617)
118 PRK09077 L-aspartate oxidase; 99.1 3.1E-09 6.8E-14 111.8 17.1 65 163-227 139-211 (536)
119 PRK08641 sdhA succinate dehydr 99.1 2.8E-09 6E-14 113.2 16.6 63 163-225 134-202 (589)
120 PRK12844 3-ketosteroid-delta-1 99.1 5.6E-09 1.2E-13 110.3 18.6 65 163-229 209-275 (557)
121 COG0665 DadA Glycine/D-amino a 99.1 2.2E-08 4.7E-13 101.6 22.3 63 157-225 151-214 (387)
122 PLN00128 Succinate dehydrogena 99.1 2.5E-09 5.5E-14 114.0 15.9 63 162-225 187-252 (635)
123 PRK08958 sdhA succinate dehydr 99.1 2.6E-09 5.6E-14 113.4 15.6 62 163-225 144-208 (588)
124 PRK08275 putative oxidoreducta 99.1 3.5E-09 7.7E-14 112.0 16.2 62 163-225 138-202 (554)
125 PRK07803 sdhA succinate dehydr 99.0 4.6E-09 1E-13 112.3 16.8 167 59-225 7-215 (626)
126 PRK12835 3-ketosteroid-delta-1 99.0 5.5E-09 1.2E-13 110.8 17.1 64 164-229 215-281 (584)
127 PRK08071 L-aspartate oxidase; 99.0 3.9E-09 8.4E-14 110.4 15.7 61 163-225 131-192 (510)
128 PLN02815 L-aspartate oxidase 99.0 4.6E-09 1E-13 111.0 16.2 165 57-225 26-224 (594)
129 PRK12839 hypothetical protein; 99.0 6.6E-09 1.4E-13 109.8 17.4 64 161-225 213-278 (572)
130 PTZ00306 NADH-dependent fumara 99.0 2.2E-09 4.7E-14 122.3 14.5 166 58-226 407-623 (1167)
131 PRK07057 sdhA succinate dehydr 99.0 6.4E-09 1.4E-13 110.5 17.1 62 163-225 149-213 (591)
132 PRK12842 putative succinate de 99.0 8E-09 1.7E-13 109.8 17.6 64 163-228 215-280 (574)
133 PTZ00383 malate:quinone oxidor 99.0 3.3E-09 7.1E-14 109.5 13.9 69 158-231 207-282 (497)
134 PRK06134 putative FAD-binding 99.0 1.7E-09 3.6E-14 114.9 11.8 63 163-227 218-282 (581)
135 KOG2853 Possible oxidoreductas 99.0 2.6E-08 5.6E-13 93.4 17.9 75 158-233 239-331 (509)
136 PRK08626 fumarate reductase fl 99.0 1.7E-09 3.8E-14 115.8 11.9 62 163-225 159-222 (657)
137 PRK12843 putative FAD-binding 99.0 1.6E-08 3.5E-13 107.4 18.6 65 163-229 222-288 (578)
138 TIGR03329 Phn_aa_oxid putative 99.0 2.7E-09 5.9E-14 110.5 12.4 60 157-224 178-238 (460)
139 PF13738 Pyr_redox_3: Pyridine 99.0 1.4E-09 3E-14 99.8 9.2 136 64-224 1-139 (203)
140 PRK07395 L-aspartate oxidase; 99.0 6.9E-09 1.5E-13 109.2 14.7 61 163-224 135-198 (553)
141 PRK08401 L-aspartate oxidase; 99.0 8.6E-09 1.9E-13 106.7 15.2 60 162-227 120-179 (466)
142 PRK08205 sdhA succinate dehydr 99.0 1E-08 2.2E-13 109.0 15.6 63 162-225 140-208 (583)
143 TIGR01811 sdhA_Bsu succinate d 99.0 1.3E-08 2.9E-13 108.2 16.0 63 163-225 130-198 (603)
144 PRK07512 L-aspartate oxidase; 98.9 1.1E-08 2.3E-13 107.2 14.3 62 163-225 137-199 (513)
145 TIGR01292 TRX_reduct thioredox 98.9 1.3E-08 2.7E-13 99.4 14.0 113 61-224 1-113 (300)
146 TIGR02061 aprA adenosine phosp 98.9 7.4E-09 1.6E-13 109.5 12.6 61 163-224 127-192 (614)
147 TIGR03364 HpnW_proposed FAD de 98.9 7.8E-09 1.7E-13 104.0 12.1 33 61-93 1-33 (365)
148 PLN02612 phytoene desaturase 98.9 4.2E-07 9.1E-12 96.3 25.3 63 59-121 92-170 (567)
149 KOG2852 Possible oxidoreductas 98.9 1.4E-07 3E-12 86.7 18.3 166 59-224 9-209 (380)
150 COG0492 TrxB Thioredoxin reduc 98.9 2.3E-08 4.9E-13 96.6 13.8 114 59-224 2-116 (305)
151 PRK05335 tRNA (uracil-5-)-meth 98.9 9.3E-09 2E-13 102.3 11.3 114 61-189 3-126 (436)
152 PRK13800 putative oxidoreducta 98.9 3.3E-08 7.2E-13 110.2 16.7 164 59-225 12-207 (897)
153 TIGR03143 AhpF_homolog putativ 98.9 2E-08 4.4E-13 106.2 13.7 114 59-225 3-116 (555)
154 COG2072 TrkA Predicted flavopr 98.9 2.4E-08 5.3E-13 102.2 13.6 38 58-95 6-44 (443)
155 PRK05976 dihydrolipoamide dehy 98.9 1.2E-08 2.7E-13 106.0 11.7 35 58-92 2-36 (472)
156 KOG1399 Flavin-containing mono 98.9 1.9E-08 4.2E-13 101.6 12.5 142 58-223 4-153 (448)
157 PRK06467 dihydrolipoamide dehy 98.9 2.7E-08 5.8E-13 103.3 14.0 36 58-93 2-37 (471)
158 TIGR02734 crtI_fam phytoene de 98.8 7.2E-07 1.6E-11 93.7 23.5 62 163-229 220-282 (502)
159 TIGR00562 proto_IX_ox protopor 98.8 1.7E-06 3.8E-11 89.9 26.1 61 61-121 3-82 (462)
160 PRK06416 dihydrolipoamide dehy 98.8 4.9E-08 1.1E-12 101.4 14.5 34 60-93 4-37 (462)
161 TIGR00275 flavoprotein, HI0933 98.8 6.2E-08 1.3E-12 98.3 14.6 138 64-223 1-160 (400)
162 PRK15317 alkyl hydroperoxide r 98.8 3.4E-08 7.3E-13 103.8 13.1 113 58-223 209-322 (517)
163 PRK07233 hypothetical protein; 98.8 1.6E-06 3.6E-11 89.3 24.8 36 62-97 1-36 (434)
164 TIGR02731 phytoene_desat phyto 98.8 8.4E-07 1.8E-11 92.0 22.4 59 62-120 1-75 (453)
165 PRK05249 soluble pyridine nucl 98.8 3.5E-08 7.5E-13 102.5 11.8 35 60-94 5-39 (461)
166 COG0029 NadB Aspartate oxidase 98.8 6E-08 1.3E-12 96.1 12.2 67 162-228 133-201 (518)
167 PLN02487 zeta-carotene desatur 98.8 3.2E-06 7E-11 88.8 25.9 62 60-121 75-152 (569)
168 PRK14694 putative mercuric red 98.8 1.4E-07 3E-12 98.1 15.6 35 59-93 5-39 (468)
169 PRK08010 pyridine nucleotide-d 98.8 1E-07 2.3E-12 98.3 14.0 34 60-93 3-36 (441)
170 COG1053 SdhA Succinate dehydro 98.8 6.4E-08 1.4E-12 101.1 12.2 170 58-227 4-206 (562)
171 PRK12416 protoporphyrinogen ox 98.7 7.3E-06 1.6E-10 85.3 27.3 60 62-121 3-83 (463)
172 TIGR02732 zeta_caro_desat caro 98.7 3.5E-06 7.6E-11 87.5 24.7 60 62-121 1-76 (474)
173 TIGR03140 AhpF alkyl hydropero 98.7 9.1E-08 2E-12 100.5 12.7 113 58-223 210-323 (515)
174 PRK06327 dihydrolipoamide dehy 98.7 1.3E-07 2.8E-12 98.5 13.4 33 59-91 3-35 (475)
175 PLN02507 glutathione reductase 98.7 1.9E-07 4.1E-12 97.5 14.6 34 59-92 24-57 (499)
176 PRK06115 dihydrolipoamide dehy 98.7 1.5E-07 3.3E-12 97.6 13.8 34 60-93 3-36 (466)
177 TIGR02485 CobZ_N-term precorri 98.7 1.6E-07 3.4E-12 96.7 13.6 63 163-229 124-189 (432)
178 TIGR01424 gluta_reduc_2 glutat 98.7 1.7E-07 3.8E-12 96.7 13.9 33 60-92 2-34 (446)
179 TIGR00137 gid_trmFO tRNA:m(5)U 98.7 1.6E-07 3.4E-12 94.3 12.9 115 61-189 1-124 (433)
180 PRK10262 thioredoxin reductase 98.7 2.5E-07 5.5E-12 91.3 14.1 113 59-223 5-117 (321)
181 PF00743 FMO-like: Flavin-bind 98.7 9.2E-08 2E-12 99.8 10.7 140 62-224 3-151 (531)
182 PRK07251 pyridine nucleotide-d 98.7 2.3E-07 5.1E-12 95.6 13.6 34 60-93 3-36 (438)
183 PRK06116 glutathione reductase 98.7 2.1E-07 4.5E-12 96.4 13.1 34 59-92 3-36 (450)
184 KOG2404 Fumarate reductase, fl 98.7 1.3E-07 2.8E-12 88.1 10.1 161 62-225 11-208 (477)
185 PRK07208 hypothetical protein; 98.7 4.6E-07 9.9E-12 94.7 15.5 40 58-97 2-41 (479)
186 PRK13977 myosin-cross-reactive 98.7 9.1E-07 2E-11 91.3 16.9 61 163-224 227-294 (576)
187 PRK13748 putative mercuric red 98.6 5.6E-07 1.2E-11 95.9 15.5 34 59-92 97-130 (561)
188 PRK07818 dihydrolipoamide dehy 98.6 5.9E-07 1.3E-11 93.3 15.0 34 59-92 3-36 (466)
189 COG1231 Monoamine oxidase [Ami 98.6 9.9E-06 2.1E-10 80.1 22.4 41 58-98 5-45 (450)
190 PF06039 Mqo: Malate:quinone o 98.6 4.9E-07 1.1E-11 89.5 13.3 78 155-232 174-254 (488)
191 TIGR01350 lipoamide_DH dihydro 98.6 2.8E-07 6.1E-12 95.8 11.0 32 61-92 2-33 (461)
192 COG3380 Predicted NAD/FAD-depe 98.6 3.2E-07 7E-12 83.8 9.8 36 61-96 2-37 (331)
193 TIGR01421 gluta_reduc_1 glutat 98.6 4.1E-07 8.9E-12 93.9 11.9 33 60-92 2-34 (450)
194 PTZ00058 glutathione reductase 98.6 4E-07 8.7E-12 95.7 11.8 38 55-92 43-80 (561)
195 PRK14727 putative mercuric red 98.6 1.3E-06 2.9E-11 90.9 15.5 36 58-93 14-49 (479)
196 PRK06370 mercuric reductase; V 98.6 5.8E-07 1.3E-11 93.4 12.7 37 57-93 2-38 (463)
197 COG0445 GidA Flavin-dependent 98.5 1.6E-07 3.5E-12 93.9 7.5 146 59-224 3-159 (621)
198 PF07992 Pyr_redox_2: Pyridine 98.5 1.5E-07 3.4E-12 86.0 6.8 32 62-93 1-32 (201)
199 KOG2844 Dimethylglycine dehydr 98.5 1.1E-06 2.4E-11 89.6 12.9 65 154-224 179-244 (856)
200 PLN02546 glutathione reductase 98.5 5.6E-07 1.2E-11 94.6 11.4 33 59-91 78-110 (558)
201 PTZ00363 rab-GDP dissociation 98.5 3.9E-05 8.4E-10 78.4 24.2 41 57-97 1-41 (443)
202 PF13450 NAD_binding_8: NAD(P) 98.5 1.3E-07 2.9E-12 69.6 4.7 32 65-96 1-32 (68)
203 PRK07845 flavoprotein disulfid 98.5 1.4E-06 2.9E-11 90.5 14.0 145 62-224 3-152 (466)
204 PF00732 GMC_oxred_N: GMC oxid 98.5 1.1E-06 2.4E-11 85.6 12.5 61 164-224 194-259 (296)
205 TIGR01372 soxA sarcosine oxida 98.5 1.8E-06 3.9E-11 97.3 15.6 36 59-94 162-197 (985)
206 PF13454 NAD_binding_9: FAD-NA 98.5 7.4E-07 1.6E-11 77.9 9.0 30 64-93 1-35 (156)
207 PRK06912 acoL dihydrolipoamide 98.5 1.4E-06 3E-11 90.4 12.5 32 62-93 2-33 (458)
208 TIGR01438 TGR thioredoxin and 98.5 2.6E-06 5.6E-11 88.7 14.1 33 60-92 2-34 (484)
209 TIGR02053 MerA mercuric reduct 98.4 1.5E-05 3.2E-10 82.9 19.5 33 61-93 1-33 (463)
210 PRK05329 anaerobic glycerol-3- 98.4 3.6E-06 7.8E-11 85.2 14.0 57 163-222 260-317 (422)
211 PTZ00052 thioredoxin reductase 98.4 3.9E-06 8.5E-11 87.7 14.6 33 60-92 5-37 (499)
212 TIGR02462 pyranose_ox pyranose 98.4 4.4E-06 9.5E-11 86.9 14.7 57 174-230 225-286 (544)
213 PF00070 Pyr_redox: Pyridine n 98.4 4.5E-06 9.7E-11 63.9 11.0 76 62-200 1-77 (80)
214 TIGR03378 glycerol3P_GlpB glyc 98.4 6.8E-06 1.5E-10 82.3 15.2 59 163-224 264-324 (419)
215 PRK06292 dihydrolipoamide dehy 98.4 3.6E-06 7.9E-11 87.4 13.5 34 59-92 2-35 (460)
216 COG1249 Lpd Pyruvate/2-oxoglut 98.4 3.4E-06 7.4E-11 85.8 12.3 36 58-93 2-37 (454)
217 TIGR01423 trypano_reduc trypan 98.3 4.3E-06 9.4E-11 86.8 12.4 34 59-92 2-36 (486)
218 PRK09897 hypothetical protein; 98.3 1.6E-05 3.4E-10 82.9 15.7 34 61-94 2-37 (534)
219 COG3573 Predicted oxidoreducta 98.3 1.4E-05 3.1E-10 75.1 13.6 37 59-95 4-40 (552)
220 COG3075 GlpB Anaerobic glycero 98.3 2E-05 4.4E-10 74.1 13.4 58 163-222 259-316 (421)
221 PRK09564 coenzyme A disulfide 98.3 6.4E-06 1.4E-10 85.2 11.4 33 62-94 2-36 (444)
222 PTZ00153 lipoamide dehydrogena 98.2 1.7E-05 3.6E-10 84.8 14.2 34 59-92 115-148 (659)
223 COG1233 Phytoene dehydrogenase 98.2 1.3E-06 2.7E-11 91.1 5.5 54 163-221 225-279 (487)
224 COG3634 AhpF Alkyl hydroperoxi 98.2 1.4E-06 3.1E-11 82.1 5.1 115 58-222 209-324 (520)
225 PRK13512 coenzyme A disulfide 98.2 8.8E-06 1.9E-10 83.8 11.4 33 62-94 3-37 (438)
226 PRK12810 gltD glutamate syntha 98.2 2.5E-05 5.4E-10 81.2 14.7 37 59-95 142-178 (471)
227 PRK02106 choline dehydrogenase 98.2 3.2E-05 7E-10 82.3 15.7 59 167-225 205-264 (560)
228 PRK11749 dihydropyrimidine deh 98.2 2.7E-05 5.9E-10 80.7 14.8 37 59-95 139-175 (457)
229 KOG1335 Dihydrolipoamide dehyd 98.2 4.6E-06 9.9E-11 79.9 7.9 38 59-96 38-75 (506)
230 TIGR01810 betA choline dehydro 98.2 2.7E-05 5.8E-10 82.4 14.6 59 165-223 196-256 (532)
231 PF13434 K_oxygenase: L-lysine 98.2 1.5E-05 3.2E-10 78.8 11.7 153 60-229 2-165 (341)
232 PRK12779 putative bifunctional 98.2 5.5E-06 1.2E-10 92.2 9.6 34 60-93 306-339 (944)
233 KOG3923 D-aspartate oxidase [A 98.2 0.00011 2.4E-09 68.3 15.9 217 60-302 3-266 (342)
234 PTZ00318 NADH dehydrogenase-li 98.1 1.8E-05 3.9E-10 81.2 11.9 109 60-224 10-126 (424)
235 KOG2311 NAD/FAD-utilizing prot 98.1 9.6E-06 2.1E-10 79.7 8.9 145 58-222 26-185 (679)
236 KOG2665 Predicted FAD-dependen 98.1 5E-06 1.1E-10 77.6 6.6 165 57-224 45-258 (453)
237 TIGR01350 lipoamide_DH dihydro 98.1 4E-05 8.7E-10 79.7 13.8 102 60-226 170-272 (461)
238 COG1249 Lpd Pyruvate/2-oxoglut 98.1 5.8E-05 1.3E-09 76.9 13.8 102 59-225 172-274 (454)
239 COG1232 HemY Protoporphyrinoge 98.1 1.1E-05 2.4E-10 81.4 8.0 61 62-122 2-79 (444)
240 PRK07818 dihydrolipoamide dehy 98.0 7.5E-05 1.6E-09 77.7 14.3 103 61-226 173-276 (466)
241 KOG0029 Amine oxidase [Seconda 98.0 5.7E-06 1.2E-10 85.4 5.8 39 59-97 14-52 (501)
242 PRK09754 phenylpropionate diox 98.0 3E-05 6.5E-10 78.9 11.0 35 60-94 3-39 (396)
243 PRK12771 putative glutamate sy 98.0 7.7E-05 1.7E-09 79.4 14.5 36 60-95 137-172 (564)
244 TIGR03169 Nterm_to_SelD pyridi 98.0 1.8E-05 3.9E-10 79.6 9.1 105 62-224 1-108 (364)
245 KOG0404 Thioredoxin reductase 98.0 3E-05 6.6E-10 68.9 9.0 119 58-223 6-124 (322)
246 PRK04965 NADH:flavorubredoxin 98.0 7E-05 1.5E-09 75.7 13.0 98 61-224 142-240 (377)
247 PRK12814 putative NADPH-depend 98.0 0.00012 2.6E-09 79.1 15.0 36 60-95 193-228 (652)
248 PRK06416 dihydrolipoamide dehy 98.0 0.00025 5.5E-09 73.7 16.7 101 61-226 173-275 (462)
249 PLN02576 protoporphyrinogen ox 98.0 1E-05 2.2E-10 85.0 6.2 40 58-97 10-50 (496)
250 COG3349 Uncharacterized conser 98.0 7.9E-06 1.7E-10 82.3 5.1 38 61-98 1-38 (485)
251 PRK06327 dihydrolipoamide dehy 98.0 0.00012 2.6E-09 76.3 14.1 103 61-226 184-287 (475)
252 PRK07846 mycothione reductase; 98.0 3.3E-05 7.2E-10 79.8 9.8 32 60-93 1-32 (451)
253 PRK06912 acoL dihydrolipoamide 98.0 0.00013 2.8E-09 75.7 14.0 100 61-226 171-271 (458)
254 PRK05976 dihydrolipoamide dehy 97.9 0.00012 2.6E-09 76.2 13.5 102 60-225 180-283 (472)
255 TIGR02730 carot_isom carotene 97.9 1E-05 2.3E-10 84.7 5.6 63 163-230 230-293 (493)
256 TIGR02733 desat_CrtD C-3',4' d 97.9 1.2E-05 2.5E-10 84.4 5.7 36 61-96 2-37 (492)
257 PRK11883 protoporphyrinogen ox 97.9 1E-05 2.2E-10 83.9 5.1 58 62-119 2-76 (451)
258 PRK05249 soluble pyridine nucl 97.9 0.00014 3E-09 75.7 13.5 100 60-226 175-275 (461)
259 PRK09754 phenylpropionate diox 97.9 0.00013 2.7E-09 74.3 12.7 98 61-225 145-243 (396)
260 COG1252 Ndh NADH dehydrogenase 97.9 7.1E-05 1.5E-09 74.5 10.5 109 60-225 3-113 (405)
261 PRK06370 mercuric reductase; V 97.9 0.00035 7.6E-09 72.7 16.2 103 60-226 171-274 (463)
262 PRK06115 dihydrolipoamide dehy 97.9 0.00021 4.5E-09 74.3 14.3 103 60-225 174-278 (466)
263 COG2509 Uncharacterized FAD-de 97.9 6.9E-05 1.5E-09 73.9 9.5 56 163-223 174-230 (486)
264 COG1148 HdrA Heterodisulfide r 97.9 1.3E-05 2.9E-10 79.1 4.5 40 58-97 122-161 (622)
265 PLN02268 probable polyamine ox 97.9 1.6E-05 3.5E-10 82.0 5.5 37 61-97 1-37 (435)
266 KOG2960 Protein involved in th 97.9 3.9E-05 8.5E-10 67.6 6.7 36 60-95 76-113 (328)
267 PRK06467 dihydrolipoamide dehy 97.8 0.00027 5.9E-09 73.5 14.0 102 61-226 175-277 (471)
268 TIGR00031 UDP-GALP_mutase UDP- 97.8 2.4E-05 5.2E-10 78.0 5.5 35 61-95 2-36 (377)
269 TIGR02352 thiamin_ThiO glycine 97.8 0.001 2.2E-08 65.9 17.3 64 156-225 131-195 (337)
270 PRK07251 pyridine nucleotide-d 97.8 0.0005 1.1E-08 71.0 15.1 98 60-225 157-255 (438)
271 TIGR03315 Se_ygfK putative sel 97.8 2.6E-05 5.6E-10 86.4 5.7 35 60-94 537-571 (1012)
272 COG2907 Predicted NAD/FAD-bind 97.8 0.00016 3.5E-09 68.8 10.0 60 59-119 7-86 (447)
273 TIGR03377 glycerol3P_GlpA glyc 97.8 0.00037 8E-09 73.5 13.9 74 157-231 123-199 (516)
274 TIGR03197 MnmC_Cterm tRNA U-34 97.8 0.0022 4.8E-08 64.9 19.0 61 157-224 130-191 (381)
275 PRK15317 alkyl hydroperoxide r 97.8 0.00029 6.3E-09 74.2 12.8 96 61-223 352-449 (517)
276 PF01593 Amino_oxidase: Flavin 97.8 0.00068 1.5E-08 69.4 15.4 44 178-226 224-268 (450)
277 PRK12831 putative oxidoreducta 97.8 4.1E-05 8.9E-10 79.3 6.2 36 59-94 139-174 (464)
278 PRK06116 glutathione reductase 97.7 0.00034 7.4E-09 72.5 12.9 101 60-226 167-268 (450)
279 TIGR03140 AhpF alkyl hydropero 97.7 0.0004 8.7E-09 73.1 13.3 96 61-223 353-450 (515)
280 PLN02852 ferredoxin-NADP+ redu 97.7 5E-05 1.1E-09 78.3 6.0 37 60-96 26-64 (491)
281 PRK10262 thioredoxin reductase 97.7 0.00053 1.2E-08 67.6 13.1 99 61-223 147-248 (321)
282 TIGR01424 gluta_reduc_2 glutat 97.7 0.00097 2.1E-08 68.9 15.6 98 61-225 167-265 (446)
283 TIGR03452 mycothione_red mycot 97.7 0.00024 5.3E-09 73.4 11.1 32 60-93 2-33 (452)
284 PLN02568 polyamine oxidase 97.7 4.9E-05 1.1E-09 79.9 5.9 39 59-97 4-47 (539)
285 KOG1276 Protoporphyrinogen oxi 97.7 0.0001 2.3E-09 71.9 7.5 67 59-125 10-97 (491)
286 PLN02507 glutathione reductase 97.7 0.00055 1.2E-08 71.7 13.5 98 61-225 204-302 (499)
287 PRK07845 flavoprotein disulfid 97.7 0.00056 1.2E-08 71.1 13.4 99 61-226 178-277 (466)
288 KOG4716 Thioredoxin reductase 97.7 0.00032 7E-09 66.4 10.2 144 59-224 18-174 (503)
289 TIGR01421 gluta_reduc_1 glutat 97.7 0.00059 1.3E-08 70.6 13.3 101 61-226 167-268 (450)
290 PRK08010 pyridine nucleotide-d 97.7 0.00061 1.3E-08 70.4 13.4 97 61-225 159-256 (441)
291 PRK04965 NADH:flavorubredoxin 97.7 0.00027 5.8E-09 71.4 10.3 34 61-94 3-38 (377)
292 PRK06292 dihydrolipoamide dehy 97.7 0.0006 1.3E-08 70.9 13.2 102 60-226 169-271 (460)
293 COG0562 Glf UDP-galactopyranos 97.7 7.3E-05 1.6E-09 70.4 5.5 36 61-96 2-37 (374)
294 PRK07846 mycothione reductase; 97.7 0.00076 1.7E-08 69.7 13.8 98 60-225 166-264 (451)
295 TIGR01292 TRX_reduct thioredox 97.6 0.00084 1.8E-08 65.3 13.5 96 60-223 141-238 (300)
296 COG1206 Gid NAD(FAD)-utilizing 97.6 0.00021 4.7E-09 67.4 8.4 115 60-190 3-128 (439)
297 PLN02676 polyamine oxidase 97.6 8.4E-05 1.8E-09 77.4 5.8 37 60-96 26-63 (487)
298 PRK14989 nitrite reductase sub 97.6 0.00038 8.3E-09 77.0 11.2 35 61-95 4-42 (847)
299 PRK06567 putative bifunctional 97.6 7.2E-05 1.6E-09 81.7 5.3 35 59-93 382-416 (1028)
300 PRK09853 putative selenate red 97.6 8.6E-05 1.9E-09 82.0 5.8 35 60-94 539-573 (1019)
301 TIGR01316 gltA glutamate synth 97.6 9.5E-05 2.1E-09 76.4 5.9 36 59-94 132-167 (449)
302 TIGR02374 nitri_red_nirB nitri 97.6 0.00033 7.1E-09 77.4 10.3 33 63-95 1-36 (785)
303 PRK14694 putative mercuric red 97.6 0.00092 2E-08 69.6 13.0 97 61-226 179-276 (468)
304 PLN02328 lysine-specific histo 97.5 0.0001 2.2E-09 80.0 5.6 38 59-96 237-274 (808)
305 PRK12769 putative oxidoreducta 97.5 0.0001 2.2E-09 79.9 5.7 37 59-95 326-362 (654)
306 COG4529 Uncharacterized protei 97.5 0.00038 8.3E-09 69.7 9.1 34 61-94 2-38 (474)
307 TIGR02374 nitri_red_nirB nitri 97.5 0.0008 1.7E-08 74.3 12.5 98 61-224 141-239 (785)
308 PRK14989 nitrite reductase sub 97.5 0.0008 1.7E-08 74.5 12.3 100 61-225 146-247 (847)
309 PRK14727 putative mercuric red 97.5 0.0011 2.4E-08 69.2 12.8 97 61-226 189-286 (479)
310 PLN02529 lysine-specific histo 97.5 0.00014 3E-09 78.4 6.1 36 59-94 159-194 (738)
311 PTZ00188 adrenodoxin reductase 97.5 0.00014 3E-09 74.0 5.7 37 60-96 39-76 (506)
312 PRK12775 putative trifunctiona 97.5 0.00011 2.4E-09 82.8 5.5 36 60-95 430-465 (1006)
313 TIGR01438 TGR thioredoxin and 97.5 0.0013 2.9E-08 68.5 13.2 99 61-225 181-281 (484)
314 PRK05675 sdhA succinate dehydr 97.5 0.0014 3E-08 69.8 13.5 63 162-225 126-191 (570)
315 PRK12778 putative bifunctional 97.5 0.00013 2.9E-09 80.3 5.9 36 59-94 430-465 (752)
316 TIGR03385 CoA_CoA_reduc CoA-di 97.5 0.0011 2.4E-08 68.1 12.4 97 61-225 138-235 (427)
317 PRK09564 coenzyme A disulfide 97.5 0.0011 2.4E-08 68.6 12.4 97 61-224 150-247 (444)
318 TIGR01318 gltD_gamma_fam gluta 97.5 0.0002 4.4E-09 74.3 6.6 37 59-95 140-176 (467)
319 PTZ00052 thioredoxin reductase 97.5 0.0015 3.2E-08 68.4 13.0 98 61-226 183-281 (499)
320 PTZ00058 glutathione reductase 97.5 0.0016 3.6E-08 68.7 13.3 101 60-225 237-338 (561)
321 TIGR03452 mycothione_red mycot 97.4 0.0019 4E-08 66.9 13.4 98 60-225 169-267 (452)
322 PRK13748 putative mercuric red 97.4 0.0025 5.3E-08 68.1 14.5 96 61-225 271-367 (561)
323 TIGR01423 trypano_reduc trypan 97.4 0.0022 4.9E-08 66.8 12.9 100 61-226 188-291 (486)
324 PF13434 K_oxygenase: L-lysine 97.4 0.001 2.2E-08 65.9 9.8 139 58-221 188-339 (341)
325 PRK12770 putative glutamate sy 97.4 0.0003 6.5E-09 70.3 6.1 35 60-94 18-52 (352)
326 COG0446 HcaD Uncharacterized N 97.4 0.002 4.3E-08 65.8 12.3 102 60-224 136-238 (415)
327 TIGR01317 GOGAT_sm_gam glutama 97.3 0.00034 7.4E-09 72.9 6.5 36 60-95 143-178 (485)
328 PRK13512 coenzyme A disulfide 97.3 0.0019 4.1E-08 66.6 11.7 94 61-225 149-243 (438)
329 TIGR01316 gltA glutamate synth 97.3 0.0029 6.3E-08 65.4 13.0 33 61-93 273-305 (449)
330 PRK12809 putative oxidoreducta 97.3 0.00042 9.1E-09 74.8 6.2 36 60-95 310-345 (639)
331 PLN02546 glutathione reductase 97.2 0.0029 6.3E-08 66.9 11.9 101 60-226 252-353 (558)
332 PLN02785 Protein HOTHEAD 97.2 0.00053 1.1E-08 72.9 6.3 36 58-94 53-88 (587)
333 PRK12770 putative glutamate sy 97.2 0.0034 7.3E-08 62.8 11.8 33 61-93 173-206 (352)
334 KOG0405 Pyridine nucleotide-di 97.2 0.0043 9.2E-08 59.3 11.5 35 59-93 19-53 (478)
335 PRK12831 putative oxidoreducta 97.2 0.004 8.6E-08 64.6 12.3 34 60-93 281-314 (464)
336 COG2303 BetA Choline dehydroge 97.2 0.00036 7.8E-09 73.6 4.5 59 166-224 206-267 (542)
337 COG0493 GltD NADPH-dependent g 97.2 0.00037 7.9E-09 71.2 4.3 37 60-96 123-159 (457)
338 KOG0685 Flavin-containing amin 97.1 0.00064 1.4E-08 67.7 5.6 40 60-99 21-61 (498)
339 PLN03000 amine oxidase 97.1 0.00068 1.5E-08 73.8 6.0 37 60-96 184-220 (881)
340 COG1252 Ndh NADH dehydrogenase 97.1 0.0019 4.2E-08 64.5 8.1 94 60-223 155-262 (405)
341 PTZ00153 lipoamide dehydrogena 97.0 0.0079 1.7E-07 64.7 12.7 33 61-93 313-345 (659)
342 PTZ00318 NADH dehydrogenase-li 97.0 0.0054 1.2E-07 63.0 10.8 91 62-223 175-280 (424)
343 PLN02976 amine oxidase 97.0 0.0011 2.3E-08 75.0 5.9 38 59-96 692-729 (1713)
344 PRK13984 putative oxidoreducta 96.9 0.0013 2.8E-08 70.8 5.8 37 59-95 282-318 (604)
345 KOG1336 Monodehydroascorbate/f 96.8 0.011 2.3E-07 59.2 11.0 101 60-225 213-315 (478)
346 KOG1335 Dihydrolipoamide dehyd 96.8 0.018 3.8E-07 56.0 11.9 111 59-232 210-322 (506)
347 TIGR03143 AhpF_homolog putativ 96.8 0.012 2.6E-07 62.6 11.9 34 60-93 143-176 (555)
348 KOG1800 Ferredoxin/adrenodoxin 96.7 0.002 4.3E-08 62.3 4.8 37 60-96 20-58 (468)
349 PRK12778 putative bifunctional 96.7 0.02 4.4E-07 63.2 13.2 33 61-93 571-604 (752)
350 TIGR01372 soxA sarcosine oxida 96.6 0.02 4.4E-07 65.0 12.9 95 60-225 317-413 (985)
351 KOG4254 Phytoene desaturase [C 96.5 0.0025 5.4E-08 63.0 4.1 63 163-229 265-327 (561)
352 PRK12769 putative oxidoreducta 96.4 0.04 8.7E-07 59.9 12.8 33 61-93 469-502 (654)
353 KOG0399 Glutamate synthase [Am 96.3 0.0054 1.2E-07 66.8 5.2 36 60-95 1785-1820(2142)
354 PRK12779 putative bifunctional 96.3 0.047 1E-06 61.4 12.9 33 61-93 448-480 (944)
355 PF06100 Strep_67kDa_ant: Stre 96.3 0.049 1.1E-06 55.4 11.5 35 61-95 3-41 (500)
356 TIGR01318 gltD_gamma_fam gluta 96.2 0.06 1.3E-06 56.0 12.5 33 61-93 283-316 (467)
357 KOG3851 Sulfide:quinone oxidor 96.2 0.0037 8.1E-08 59.0 3.1 36 58-93 37-74 (446)
358 KOG1238 Glucose dehydrogenase/ 96.1 0.024 5.1E-07 59.1 8.8 39 57-95 54-93 (623)
359 KOG2495 NADH-dehydrogenase (ub 96.1 0.025 5.4E-07 55.8 8.2 42 177-223 287-329 (491)
360 TIGR03169 Nterm_to_SelD pyridi 96.0 0.067 1.4E-06 53.7 11.5 29 61-89 146-180 (364)
361 PLN02852 ferredoxin-NADP+ redu 95.9 0.18 4E-06 52.3 14.2 22 61-82 167-188 (491)
362 PF01210 NAD_Gly3P_dh_N: NAD-d 95.7 0.012 2.6E-07 51.3 4.0 32 62-93 1-32 (157)
363 COG1251 NirB NAD(P)H-nitrite r 95.7 0.036 7.7E-07 58.5 7.9 97 62-224 147-244 (793)
364 COG0492 TrxB Thioredoxin reduc 95.7 0.15 3.3E-06 49.5 12.0 94 60-222 143-237 (305)
365 COG3486 IucD Lysine/ornithine 95.7 0.075 1.6E-06 52.3 9.7 148 58-225 3-159 (436)
366 PF00996 GDI: GDP dissociation 95.6 0.014 2.9E-07 59.3 4.6 38 57-94 1-38 (438)
367 TIGR01317 GOGAT_sm_gam glutama 95.6 0.19 4.1E-06 52.6 13.3 34 61-94 284-318 (485)
368 PRK12775 putative trifunctiona 95.6 0.13 2.7E-06 58.6 12.6 33 60-92 571-604 (1006)
369 TIGR03862 flavo_PP4765 unchara 95.5 0.22 4.8E-06 49.8 12.7 55 162-223 86-141 (376)
370 PF02737 3HCDH_N: 3-hydroxyacy 95.5 0.015 3.2E-07 52.0 3.9 32 62-93 1-32 (180)
371 PRK13984 putative oxidoreducta 95.5 0.17 3.8E-06 54.5 12.8 30 61-90 419-454 (604)
372 TIGR01816 sdhA_forward succina 95.5 0.063 1.4E-06 57.2 9.2 62 163-225 120-183 (565)
373 COG3634 AhpF Alkyl hydroperoxi 95.3 0.23 5E-06 47.8 11.3 85 58-209 352-438 (520)
374 COG0569 TrkA K+ transport syst 95.3 0.022 4.8E-07 52.8 4.4 57 62-118 2-65 (225)
375 PRK02705 murD UDP-N-acetylmura 95.2 0.022 4.8E-07 59.2 4.7 33 62-94 2-34 (459)
376 PRK01438 murD UDP-N-acetylmura 95.1 0.037 8E-07 57.9 6.1 33 61-93 17-49 (480)
377 KOG1336 Monodehydroascorbate/f 95.1 0.11 2.3E-06 52.3 8.8 33 60-92 74-108 (478)
378 PF03721 UDPG_MGDP_dh_N: UDP-g 95.1 0.023 4.9E-07 51.0 3.7 33 61-93 1-33 (185)
379 TIGR02053 MerA mercuric reduct 95.0 0.04 8.7E-07 57.3 5.8 34 61-94 167-200 (463)
380 PRK12809 putative oxidoreducta 94.9 0.31 6.7E-06 52.9 12.6 33 61-93 452-485 (639)
381 TIGR03315 Se_ygfK putative sel 94.8 0.39 8.5E-06 54.1 13.1 34 60-93 666-701 (1012)
382 PF02558 ApbA: Ketopantoate re 94.7 0.048 1E-06 47.0 4.8 31 63-93 1-31 (151)
383 PRK06129 3-hydroxyacyl-CoA deh 94.4 0.044 9.4E-07 53.6 4.3 32 62-93 4-35 (308)
384 TIGR01470 cysG_Nterm siroheme 94.1 0.078 1.7E-06 48.3 4.9 32 61-92 10-41 (205)
385 PRK05708 2-dehydropantoate 2-r 94.1 0.074 1.6E-06 51.9 5.0 34 60-93 2-35 (305)
386 PF01262 AlaDh_PNT_C: Alanine 94.1 0.081 1.8E-06 46.6 4.8 34 60-93 20-53 (168)
387 PRK06249 2-dehydropantoate 2-r 94.0 0.085 1.9E-06 51.7 5.3 34 60-93 5-38 (313)
388 PRK10669 putative cation:proto 93.9 0.23 4.9E-06 53.0 8.7 35 60-94 417-451 (558)
389 PRK09853 putative selenate red 93.9 0.73 1.6E-05 51.8 12.7 34 60-93 668-703 (1019)
390 PRK06719 precorrin-2 dehydroge 93.8 0.091 2E-06 45.7 4.5 31 61-91 14-44 (157)
391 PRK08293 3-hydroxybutyryl-CoA 93.8 0.074 1.6E-06 51.4 4.4 33 61-93 4-36 (287)
392 PRK07530 3-hydroxybutyryl-CoA 93.8 0.088 1.9E-06 51.1 4.8 33 61-93 5-37 (292)
393 TIGR02354 thiF_fam2 thiamine b 93.8 0.1 2.2E-06 47.5 4.9 33 60-92 21-54 (200)
394 TIGR03467 HpnE squalene-associ 93.7 2.7 5.8E-05 42.8 16.1 53 166-223 201-254 (419)
395 PF13478 XdhC_C: XdhC Rossmann 93.6 0.08 1.7E-06 44.7 3.7 32 63-94 1-32 (136)
396 PRK07819 3-hydroxybutyryl-CoA 93.6 0.077 1.7E-06 51.2 4.2 33 62-94 7-39 (286)
397 PRK14106 murD UDP-N-acetylmura 93.6 0.085 1.8E-06 54.7 4.7 33 61-93 6-38 (450)
398 PRK09260 3-hydroxybutyryl-CoA 93.6 0.08 1.7E-06 51.2 4.2 32 62-93 3-34 (288)
399 COG1004 Ugd Predicted UDP-gluc 93.6 0.086 1.9E-06 51.9 4.3 33 61-93 1-33 (414)
400 PRK15116 sulfur acceptor prote 93.5 0.12 2.6E-06 49.0 5.1 34 60-93 30-64 (268)
401 PRK07066 3-hydroxybutyryl-CoA 93.5 0.091 2E-06 51.4 4.4 32 62-93 9-40 (321)
402 PF13241 NAD_binding_7: Putati 93.5 0.063 1.4E-06 43.0 2.7 33 60-92 7-39 (103)
403 PF02254 TrkA_N: TrkA-N domain 93.4 0.11 2.4E-06 42.5 4.2 31 63-93 1-31 (116)
404 PRK06522 2-dehydropantoate 2-r 93.4 0.095 2.1E-06 51.1 4.5 32 62-93 2-33 (304)
405 PRK12921 2-dehydropantoate 2-r 93.4 0.1 2.2E-06 50.9 4.7 30 62-91 2-31 (305)
406 KOG0404 Thioredoxin reductase 93.3 0.9 2E-05 41.1 9.8 102 60-229 157-260 (322)
407 TIGR00518 alaDH alanine dehydr 93.3 0.11 2.4E-06 52.1 4.8 34 60-93 167-200 (370)
408 PRK09424 pntA NAD(P) transhydr 93.3 0.092 2E-06 54.5 4.2 34 60-93 165-198 (509)
409 PRK06035 3-hydroxyacyl-CoA deh 93.3 0.096 2.1E-06 50.8 4.2 32 62-93 5-36 (291)
410 cd00401 AdoHcyase S-adenosyl-L 93.2 0.11 2.4E-06 52.5 4.6 34 60-93 202-235 (413)
411 PF00899 ThiF: ThiF family; I 93.2 0.13 2.7E-06 43.5 4.4 34 60-93 2-36 (135)
412 PF13738 Pyr_redox_3: Pyridine 93.2 0.097 2.1E-06 47.5 3.9 34 60-93 167-200 (203)
413 PF01488 Shikimate_DH: Shikima 93.1 0.18 3.9E-06 42.6 5.2 33 60-92 12-45 (135)
414 PF00743 FMO-like: Flavin-bind 93.0 0.34 7.3E-06 51.1 8.0 34 60-93 183-216 (531)
415 PRK06718 precorrin-2 dehydroge 92.9 0.17 3.7E-06 46.0 5.0 32 61-92 11-42 (202)
416 PRK05808 3-hydroxybutyryl-CoA 92.8 0.12 2.6E-06 49.8 4.2 33 62-94 5-37 (282)
417 PRK06567 putative bifunctional 92.7 0.59 1.3E-05 52.1 9.5 32 61-92 551-585 (1028)
418 cd05292 LDH_2 A subgroup of L- 92.5 0.17 3.7E-06 49.4 4.8 33 62-94 2-36 (308)
419 PRK12475 thiamine/molybdopteri 92.5 0.19 4E-06 49.7 4.9 34 60-93 24-58 (338)
420 PRK08229 2-dehydropantoate 2-r 92.4 0.18 3.9E-06 50.1 4.9 32 61-92 3-34 (341)
421 PRK04148 hypothetical protein; 92.4 0.14 2.9E-06 42.9 3.3 32 61-93 18-49 (134)
422 KOG2495 NADH-dehydrogenase (ub 92.1 1.9 4.2E-05 43.0 11.2 116 59-225 54-172 (491)
423 TIGR02355 moeB molybdopterin s 92.1 0.24 5.2E-06 46.4 5.0 34 60-93 24-58 (240)
424 TIGR02356 adenyl_thiF thiazole 92.1 0.25 5.5E-06 44.9 5.0 34 60-93 21-55 (202)
425 PRK07688 thiamine/molybdopteri 92.0 0.23 5.1E-06 49.0 5.1 34 60-93 24-58 (339)
426 TIGR01763 MalateDH_bact malate 91.9 0.25 5.4E-06 48.1 5.1 33 61-93 2-35 (305)
427 PRK06130 3-hydroxybutyryl-CoA 91.9 0.23 5.1E-06 48.6 5.0 33 61-93 5-37 (311)
428 cd01080 NAD_bind_m-THF_DH_Cycl 91.7 0.3 6.4E-06 43.0 4.9 33 60-92 44-77 (168)
429 PRK10537 voltage-gated potassi 91.7 0.98 2.1E-05 45.6 9.2 33 60-92 240-272 (393)
430 PRK14618 NAD(P)H-dependent gly 91.7 0.28 6E-06 48.5 5.2 33 61-93 5-37 (328)
431 PRK11064 wecC UDP-N-acetyl-D-m 91.7 0.22 4.7E-06 50.9 4.6 34 61-94 4-37 (415)
432 PRK14620 NAD(P)H-dependent gly 91.6 0.24 5.2E-06 48.9 4.7 32 62-93 2-33 (326)
433 TIGR02964 xanthine_xdhC xanthi 91.6 0.29 6.3E-06 46.0 5.0 36 59-94 99-134 (246)
434 PF00056 Ldh_1_N: lactate/mala 91.6 0.34 7.4E-06 41.3 5.0 33 61-93 1-36 (141)
435 cd01487 E1_ThiF_like E1_ThiF_l 91.6 0.31 6.7E-06 43.2 4.9 32 62-93 1-33 (174)
436 COG5044 MRS6 RAB proteins gera 91.4 0.34 7.5E-06 47.1 5.2 36 60-95 6-41 (434)
437 PLN02545 3-hydroxybutyryl-CoA 91.4 0.28 6E-06 47.6 4.8 32 62-93 6-37 (295)
438 PRK05690 molybdopterin biosynt 91.3 0.31 6.7E-06 45.9 4.9 34 60-93 32-66 (245)
439 PRK08644 thiamine biosynthesis 91.3 0.35 7.5E-06 44.4 5.1 34 60-93 28-62 (212)
440 TIGR03026 NDP-sugDHase nucleot 91.3 0.22 4.8E-06 50.9 4.2 33 62-94 2-34 (411)
441 PRK08328 hypothetical protein; 91.3 0.32 6.9E-06 45.3 4.9 34 60-93 27-61 (231)
442 COG1063 Tdh Threonine dehydrog 91.2 0.25 5.4E-06 49.3 4.3 32 62-93 171-203 (350)
443 TIGR00936 ahcY adenosylhomocys 91.1 0.28 6E-06 49.5 4.6 35 60-94 195-229 (406)
444 PRK14619 NAD(P)H-dependent gly 91.0 0.35 7.5E-06 47.3 5.1 33 61-93 5-37 (308)
445 cd00757 ThiF_MoeB_HesA_family 91.0 0.35 7.7E-06 45.0 4.9 34 60-93 21-55 (228)
446 cd01483 E1_enzyme_family Super 90.9 0.39 8.5E-06 40.9 4.8 32 62-93 1-33 (143)
447 PRK03659 glutathione-regulated 90.8 0.97 2.1E-05 48.6 8.6 34 60-93 400-433 (601)
448 PTZ00082 L-lactate dehydrogena 90.7 0.45 9.7E-06 46.7 5.6 35 60-94 6-41 (321)
449 COG0446 HcaD Uncharacterized N 90.7 1.1 2.4E-05 45.4 8.7 33 63-95 1-35 (415)
450 PRK12549 shikimate 5-dehydroge 90.6 0.34 7.4E-06 46.7 4.5 32 61-92 128-160 (284)
451 PRK08223 hypothetical protein; 90.5 0.41 8.9E-06 45.7 4.8 34 60-93 27-61 (287)
452 PRK11749 dihydropyrimidine deh 90.5 0.35 7.5E-06 50.2 4.8 34 60-93 273-307 (457)
453 cd00755 YgdL_like Family of ac 90.5 0.43 9.4E-06 44.3 4.9 34 60-93 11-45 (231)
454 PRK07531 bifunctional 3-hydrox 90.4 0.36 7.9E-06 50.5 4.9 33 61-93 5-37 (495)
455 TIGR00561 pntA NAD(P) transhyd 90.4 0.4 8.6E-06 49.8 5.0 34 60-93 164-197 (511)
456 KOG2304 3-hydroxyacyl-CoA dehy 90.4 0.34 7.3E-06 43.8 3.8 34 60-93 11-44 (298)
457 cd01485 E1-1_like Ubiquitin ac 90.4 0.44 9.6E-06 43.2 4.8 34 60-93 19-53 (198)
458 PRK00094 gpsA NAD(P)H-dependen 90.3 0.4 8.6E-06 47.2 4.8 32 62-93 3-34 (325)
459 PRK03369 murD UDP-N-acetylmura 90.3 0.33 7.1E-06 50.8 4.4 32 61-92 13-44 (488)
460 COG0686 Ald Alanine dehydrogen 90.2 0.29 6.3E-06 46.5 3.5 34 60-93 168-201 (371)
461 PRK07417 arogenate dehydrogena 90.2 0.37 7.9E-06 46.4 4.4 32 62-93 2-33 (279)
462 TIGR03736 PRTRC_ThiF PRTRC sys 90.1 0.45 9.7E-06 44.4 4.6 35 59-93 10-55 (244)
463 PRK08306 dipicolinate synthase 90.0 0.44 9.6E-06 46.2 4.8 34 60-93 152-185 (296)
464 TIGR02279 PaaC-3OHAcCoADH 3-hy 90.0 0.34 7.4E-06 50.6 4.2 34 61-94 6-39 (503)
465 PRK06223 malate dehydrogenase; 90.0 0.47 1E-05 46.4 5.0 34 61-94 3-37 (307)
466 PF00670 AdoHcyase_NAD: S-aden 90.0 0.38 8.2E-06 41.6 3.7 33 61-93 24-56 (162)
467 TIGR02730 carot_isom carotene 89.9 0.91 2E-05 47.6 7.4 36 61-96 1-36 (493)
468 cd05311 NAD_bind_2_malic_enz N 89.9 0.48 1E-05 43.9 4.8 33 61-93 26-61 (226)
469 cd01492 Aos1_SUMO Ubiquitin ac 89.9 0.5 1.1E-05 42.8 4.7 34 60-93 21-55 (197)
470 PRK05476 S-adenosyl-L-homocyst 89.8 0.42 9.1E-06 48.5 4.6 35 60-94 212-246 (425)
471 PRK15057 UDP-glucose 6-dehydro 89.7 0.43 9.2E-06 48.2 4.5 32 62-94 2-33 (388)
472 PRK02472 murD UDP-N-acetylmura 89.7 0.41 8.8E-06 49.6 4.5 32 62-93 7-38 (447)
473 PLN02353 probable UDP-glucose 89.6 0.43 9.4E-06 49.4 4.5 33 61-93 2-36 (473)
474 cd05293 LDH_1 A subgroup of L- 89.5 0.61 1.3E-05 45.6 5.3 34 60-93 3-38 (312)
475 cd05291 HicDH_like L-2-hydroxy 89.5 0.5 1.1E-05 46.1 4.7 33 62-94 2-36 (306)
476 PRK04308 murD UDP-N-acetylmura 89.4 0.51 1.1E-05 48.8 4.9 34 61-94 6-39 (445)
477 PRK01710 murD UDP-N-acetylmura 89.4 0.45 9.7E-06 49.4 4.5 33 61-93 15-47 (458)
478 KOG1346 Programmed cell death 89.3 0.85 1.9E-05 45.1 5.9 42 176-222 406-448 (659)
479 PRK00066 ldh L-lactate dehydro 89.3 0.67 1.5E-05 45.4 5.4 34 60-93 6-41 (315)
480 cd01339 LDH-like_MDH L-lactate 89.3 0.48 1E-05 46.1 4.4 31 63-93 1-32 (300)
481 KOG4716 Thioredoxin reductase 89.2 0.7 1.5E-05 44.5 5.2 105 60-227 198-304 (503)
482 COG1179 Dinucleotide-utilizing 89.1 0.52 1.1E-05 43.3 4.1 34 60-93 30-64 (263)
483 PRK08268 3-hydroxy-acyl-CoA de 89.0 0.45 9.7E-06 49.9 4.2 34 61-94 8-41 (507)
484 PRK09496 trkA potassium transp 89.0 0.46 1E-05 49.2 4.4 33 62-94 2-34 (453)
485 COG1748 LYS9 Saccharopine dehy 89.0 0.55 1.2E-05 46.9 4.6 34 61-94 2-36 (389)
486 TIGR01915 npdG NADPH-dependent 88.8 0.61 1.3E-05 43.0 4.6 32 62-93 2-34 (219)
487 KOG1346 Programmed cell death 88.8 2.2 4.8E-05 42.3 8.3 134 57-224 175-312 (659)
488 PRK05600 thiamine biosynthesis 88.8 0.67 1.4E-05 46.4 5.1 34 60-93 41-75 (370)
489 cd01078 NAD_bind_H4MPT_DH NADP 88.7 0.72 1.6E-05 41.6 4.9 32 61-92 29-61 (194)
490 PRK11730 fadB multifunctional 88.7 0.5 1.1E-05 51.8 4.5 34 61-94 314-347 (715)
491 cd01075 NAD_bind_Leu_Phe_Val_D 88.5 0.94 2E-05 41.1 5.5 32 61-92 29-60 (200)
492 COG0771 MurD UDP-N-acetylmuram 88.5 0.5 1.1E-05 48.1 4.0 36 60-95 7-42 (448)
493 TIGR02853 spore_dpaA dipicolin 88.5 0.57 1.2E-05 45.2 4.3 34 60-93 151-184 (287)
494 PLN02494 adenosylhomocysteinas 88.5 0.64 1.4E-05 47.5 4.7 35 60-94 254-288 (477)
495 TIGR02437 FadB fatty oxidation 88.4 0.54 1.2E-05 51.5 4.5 34 61-94 314-347 (714)
496 PF03446 NAD_binding_2: NAD bi 88.4 0.75 1.6E-05 40.2 4.7 33 61-93 2-34 (163)
497 PRK05597 molybdopterin biosynt 88.4 0.68 1.5E-05 46.2 4.9 34 60-93 28-62 (355)
498 PRK12548 shikimate 5-dehydroge 88.3 0.72 1.6E-05 44.6 4.9 33 61-93 127-160 (289)
499 COG1893 ApbA Ketopantoate redu 88.2 0.59 1.3E-05 45.5 4.2 32 62-93 2-33 (307)
500 cd01484 E1-2_like Ubiquitin ac 88.1 0.8 1.7E-05 42.6 4.8 32 62-93 1-33 (234)
No 1
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=100.00 E-value=1.9e-70 Score=509.21 Aligned_cols=450 Identities=70% Similarity=1.149 Sum_probs=431.5
Q ss_pred CCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEE
Q 010623 55 GECPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYAL 134 (506)
Q Consensus 55 ~~~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 134 (506)
...+..+||+|||||.+|.++|+.|+|.|.+|.|+||+-..+++..|+.++|+|...|+++|+.|++..++.+...++.+
T Consensus 40 ~~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~i 119 (509)
T KOG1298|consen 40 ARNDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAI 119 (509)
T ss_pred hccCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEE
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCe
Q 010623 135 FKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPL 214 (506)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~ 214 (506)
+.+|+...+.||..+++..+.++.+++++|.+.|++.+...+++++.+++|.++.++++.+.||+++++.|++.+..|.+
T Consensus 120 fk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~k~gee~~~~ApL 199 (509)
T KOG1298|consen 120 FKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEEGVVKGVTYKNKEGEEVEAFAPL 199 (509)
T ss_pred EeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeeeHHHHHhccCeEEeEEEecCCCceEEEecce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999989888899999
Q ss_pred EEeecCCcccchhhccCCCC-CCccceeeEEEeccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCCCCCCCch
Q 010623 215 TIVCDGCFSNLRRSLCNPKV-DVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNG 293 (506)
Q Consensus 215 vV~AdG~~S~vR~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 293 (506)
.|.|||.+|++|+.+..+.. ...++++|++..+++.+.+++++++++++.++.+||++..++++.+.++++..|.....
T Consensus 200 TvVCDGcfSnlRrsL~~~~v~~V~S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~~v~g~~~Psi~~g 279 (509)
T KOG1298|consen 200 TVVCDGCFSNLRRSLCDPKVEEVPSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLVDVPGQKLPSIANG 279 (509)
T ss_pred EEEecchhHHHHHHhcCCcccccchheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEEecCcccCCcccch
Confidence 99999999999999987554 37789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHH
Q 010623 294 EMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNL 373 (506)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~ 373 (506)
++..++.+.+.|++|+.+++.|.++++.+.++..|...+++......+++|+|||..+-||.+|.||..++.|...|.+.
T Consensus 280 em~~~mk~~v~PqiP~~lR~~F~~av~~g~irsmpn~~mpa~~~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~l 359 (509)
T KOG1298|consen 280 EMATYMKESVAPQIPEKLRESFLEAVDEGNIRSMPNSSMPATLNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRL 359 (509)
T ss_pred hHHHHHHHhhCcCCCHHHHHHHHHHhhccchhcCccccCCCCcCCCCceEEEcccccccCCccCCceEeehhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCchhHHHhhcCCCC
Q 010623 374 LRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNP 453 (506)
Q Consensus 374 L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~ 453 (506)
|....+..+...+.+.+++|...|+|....++.++.+++++|....+....++|+.||+|+.+|+.+.++++.+++|+.|
T Consensus 360 l~pl~dL~d~ekv~~~i~sFy~~RKp~s~tINtLa~Aly~vf~as~dea~~~mr~gCfdYl~~GG~c~sGpv~lLsGlnP 439 (509)
T KOG1298|consen 360 LKPLPDLSDAEKVSDYIKSFYWIRKPYSATINTLANALYQVFVASTDEARKAMRKGCFDYLKRGGFCVSGPVALLSGLNP 439 (509)
T ss_pred hccccccccHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCccccchHHHhcCCCC
Confidence 99988888999999999999999999999999999999999999779999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHH---HHHHHHHhhhhh
Q 010623 454 RPLILVFHFFAVAIYGVGRILLPFPSPYRFWIGARIITV---CILPAMLDNQIF 504 (506)
Q Consensus 454 ~p~~~~~h~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 504 (506)
+|.++..||+++.+|+++..+.++|.|.+.|++..++.. +++|+++.|...
T Consensus 440 ~Pl~Lv~HffAValy~i~~ll~p~PsP~riw~s~~i~~~A~~vi~P~i~aEgv~ 493 (509)
T KOG1298|consen 440 RPLSLVLHFFAVALYGIYRLLSPFPSPRRIWESLRILSLASSVIFPIIKAEGVS 493 (509)
T ss_pred CchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 999999999999999999999999999999999999998 999999998653
No 2
>PLN02985 squalene monooxygenase
Probab=100.00 E-value=9.7e-66 Score=531.33 Aligned_cols=483 Identities=49% Similarity=0.840 Sum_probs=395.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCCCcccCCCCCCCCcEEEECCCHHHHHHHHHHHHCC
Q 010623 4 QYTWGLILGAVLGLVAVYNLGLLALYNLVMRSKSEDNGADSLRKTPTTALNGECPFDADVIVVGAGVAGAALANTLAKDG 83 (506)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~~A~~La~~G 83 (506)
.+.|++++..|++++.++. +.|. +|+ . .... +....+.....+||+|||||++|+++|+.|+++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~-----~~~~----~~~-~--~~~~---~~~~~~~~~~~~DViIVGAG~aGlalA~aLa~~G 66 (514)
T PLN02985 2 THVCLWTLLAFVLTWTVFY-----VTNR----KKK-A--TELA---DAVAEERKDGATDVIIVGAGVGGSALAYALAKDG 66 (514)
T ss_pred cchHHHHHHHHHHHHHHHH-----Hhhh----hhh-h--cchh---hhhcccCcCCCceEEEECCCHHHHHHHHHHHHcC
Confidence 4678899999999998865 2222 111 1 1100 0011112234689999999999999999999999
Q ss_pred CcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCceeeeecCCcC--CCCCcccccccc
Q 010623 84 RRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEK--FHSDVAGRGFHN 161 (506)
Q Consensus 84 ~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~ 161 (506)
++|+|+||.+....+..|..+++++.+.|+++|+++.+......+..++.++.+++.....++... ......++.++|
T Consensus 67 ~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~i~r 146 (514)
T PLN02985 67 RRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDGKEAVAPFPVDNNNFPYEPSARSFHN 146 (514)
T ss_pred CeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECCEEEEEeCCCCCcCCCcccceeeeec
Confidence 999999998766667788999999999999999999988765567777888777765555555322 122345678999
Q ss_pred hHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccchhhccCCCCCCcccee
Q 010623 162 GRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFV 241 (506)
Q Consensus 162 ~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l~~~~~~~~~~~~ 241 (506)
.+|.+.|++.+.+.+++++..++++++.++++.+.+|++.+.+|++.+++||+||+|||.+|.+|++++.+.........
T Consensus 147 ~~l~~~L~~~a~~~~~V~i~~gtvv~li~~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l~~~~~~~~s~~~ 226 (514)
T PLN02985 147 GRFVQRLRQKASSLPNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQV 226 (514)
T ss_pred HHHHHHHHHHHHhCCCeEEEeeeEEEEEEcCCEEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHhccCCCcceeEeE
Confidence 99999999999988899999889988888777777888877788877788999999999999999999875543333444
Q ss_pred eEEEeccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCCCCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcC
Q 010623 242 GLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDG 321 (506)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (506)
++...+...+.++..++++++++++.+||+++++.++++..+.+..++.+..+..+++.+...+.+++.+.+.+...++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~ypi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~ 306 (514)
T PLN02985 227 GYISKNCRLEEPEKLHLIMSKPSFTMLYQISSTDVRCVFEVLPDNIPSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDE 306 (514)
T ss_pred EEEEccccCCCCCcceEEcCCCceEEEEEeCCCeEEEEEEEeCCCCCCcChhhHHHHHHhccccccCHHHHHHHHhhccc
Confidence 55444445556667788888888999999999998888888776666666677788887766677888888777655544
Q ss_pred C-CeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcch
Q 010623 322 G-NIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPV 400 (506)
Q Consensus 322 ~-~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~ 400 (506)
. .+..++....+...+..+|++|+|||||+++|++|||||+|++||..|++.|....+..+..+..++|++|+++|+++
T Consensus 307 ~~~~~~~p~~~l~~~~~~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~r 386 (514)
T PLN02985 307 GAHIKVVPTKRMSATLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPM 386 (514)
T ss_pred ccceeecCcccccccccCCCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhcc
Confidence 3 466777766666777789999999999999999999999999999999999987544445567889999999999999
Q ss_pred hHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCchhHHHhhcCCCCCchhhHHHHHHHHHHHHHHhhccCCCh
Q 010623 401 ASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFPSP 480 (506)
Q Consensus 401 ~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~h~~~~~l~~~~~~l~~~~~~ 480 (506)
+..++.+|+.++++|...+++..+.+|+.||+|+.+|+.+.++|+.+++|+.|+|..++.|||.|.+|+++..+...+.|
T Consensus 387 ~~~i~~la~al~~~f~a~~~~~~~~l~~~~f~y~~~g~~~~~~~~~ll~~~~~~p~~l~~h~~~v~~~~~~~~~~~~~~~ 466 (514)
T PLN02985 387 SATVNTLGNAFSQVLVASTDEAKEAMRQGCYDYLCSGGFRTSGMMALLGGMNPRPLSLIYHLCAITLSSIGHLLSPFPSP 466 (514)
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCccccccHHHHcCCCCCcHHHHHHHHHHHHHHHHHHhcccCCh
Confidence 99999999999999975458889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH---HHHHHHHhh
Q 010623 481 YRFWIGARIITV---CILPAMLDN 501 (506)
Q Consensus 481 ~~~~~~~~~~~~---~~~~~~~~~ 501 (506)
.+.|+++.++|+ +|+|+++.|
T Consensus 467 ~~~~~~~~~~~~a~~~~~p~~~~e 490 (514)
T PLN02985 467 LRIWHSLRLFGLALKMLVPHLKAE 490 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 999999999999 999999999
No 3
>PTZ00367 squalene epoxidase; Provisional
Probab=100.00 E-value=6.4e-59 Score=482.10 Aligned_cols=432 Identities=43% Similarity=0.701 Sum_probs=349.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-CCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC-
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL-SEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD- 137 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~-~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~- 137 (506)
++||+||||||+|+++|+.|+++|++|+|+||++ ....+..|..+++++.++|+++|+++.+..... +..++.+++.
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l~~i~~-~~~~~~v~~~~ 111 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECAEGIGM-PCFGYVVFDHK 111 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhHhhcCc-ceeeeEEEECC
Confidence 5899999999999999999999999999999986 233456788899999999999999998876554 3667777664
Q ss_pred CceeeeecCCcCCCCCcccccccchHHHHHHHHHH--HcCCCEEEEeceEEEEEeeCC----eEEEEEEEeCCc------
Q 010623 138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKA--ASLPNVRLEQGTVTSLLEEKG----TIKGVQYKTKAG------ 205 (506)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~--~~~~~v~i~~~~v~~~~~~~~----~v~~v~v~~~~G------ 205 (506)
+......++ ....+..++++++.+.|++.+ ...+++++..++|+++.++++ ++.+|++...++
T Consensus 112 G~~~~i~~~-----~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~ 186 (567)
T PTZ00367 112 GKQVKLPYG-----AGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLEGTVNSLLEEGPGFSERAYGVEYTEAEKYDVPEN 186 (567)
T ss_pred CCEEEecCC-----CCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEEeEEEEeccccCccCCeeEEEEEecCCccccccc
Confidence 443333322 223355678899999999888 445688888778988876554 367787765542
Q ss_pred ---------------cEEEEEcCeEEeecCCcccchhhccCCCC--CCccceeeEEEeccCCCCCCeeEEEecCCCcEEE
Q 010623 206 ---------------EELTAYAPLTIVCDGCFSNLRRSLCNPKV--DVPSCFVGLVLENCNLPFENHGHVVLADPSPILF 268 (506)
Q Consensus 206 ---------------~~~~i~a~~vV~AdG~~S~vR~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (506)
+..+++||+||+|||.+|.+|++++.... .....+.+....+...+.++...+++++++++++
T Consensus 187 ~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~~~~~~v~~g~~gpi~~ 266 (567)
T PTZ00367 187 PFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKEQHGTVFLGKTGPILS 266 (567)
T ss_pred ccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCCCCeeEEEEcCCceEEE
Confidence 12457899999999999999999976432 2345566666656667777778888999999999
Q ss_pred EecCCCeEEEEEEecCCCCCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcC-CCeEEecCCccCCCCCCCCcEEEEcc
Q 010623 269 YPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDG-GNIKTMPNRSMPAAPYPTPGALLMGD 347 (506)
Q Consensus 269 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~rv~LvGD 347 (506)
||+++++.++++.++....++ .++..+++.+...+.+++++.+.+...+.. +.+..++....++.+|..+|++|+||
T Consensus 267 yPl~~~~~r~lv~~~~~~~p~--~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l~~~p~~~~p~~~~~~~gvvLIGD 344 (567)
T PTZ00367 267 YRLDDNELRVLVDYNKPTLPS--LEEQSEWLIEDVAPHLPENMRESFIRASKDTKRIRSMPNARYPPAFPSIKGYVGIGD 344 (567)
T ss_pred EEcCCCeEEEEEEecCCcCCC--hHHHHHHHHHhhcccCcHHHHHHHHHhhcccCCeEEeeHhhCCCccCCCCCEEEEEc
Confidence 999999888888776443222 234566676666677888888777665532 45777788877777888899999999
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHhhhcC-----CCCChHHHHHHHH----HHHHHhcchhHHHHHHHHHHHHHHcCC
Q 010623 348 AFNMRHPLTGGGMTVALSDIVILRNLLRHLS-----NLNDAPALCNYLE----SFYTLRKPVASTINTLAGALYQVFSAS 418 (506)
Q Consensus 348 AAh~~~P~~GqG~n~ai~Da~~La~~L~~~~-----~~~~~~~~~~~L~----~Y~~~R~~~~~~~~~~s~~~~~~~~~~ 418 (506)
|||+++|++|||||+||+||..|++.|.... +.++..+++++|+ .|+++|++++..++.+++.++++|+.
T Consensus 345 AAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~d~~~v~~aL~~~~~~Y~~~Rk~~a~~i~~ls~aL~~lf~~- 423 (567)
T PTZ00367 345 HANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQNEMAEIEDAIQAAILSYARNRKTHASTINILSWALYSVFSS- 423 (567)
T ss_pred ccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHhCh-
Confidence 9999999999999999999999999998542 2223335677787 99999999999999999999999976
Q ss_pred CchhHHHHHHHHHHHHhcCCCCchhHHHhhcCCCCCchhhHHHHHHHHHHHHHHhhcc----------------------
Q 010623 419 PDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLP---------------------- 476 (506)
Q Consensus 419 ~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~h~~~~~l~~~~~~l~~---------------------- 476 (506)
..+|+.||+|+..|+.+.++|+.+++|+.++|..++.|||.|.+|+++.++.+
T Consensus 424 -----~~lr~~~~~y~~~gg~~~~~p~~ll~g~~~~p~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (567)
T PTZ00367 424 -----PALRDACLDYFSLGGECVTGPMSLLSGLDPSPGGLLFHYFSVALYGVLNLIMETGAYSIFGKQLSSFEKLTNVAS 498 (567)
T ss_pred -----HHHHHHHHHHHhcCCccccccHHHHcCCCCCcHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 47999999999999999999999999999999999999999999999998887
Q ss_pred -CCChHHHHHHHHHHHH---HHHHHHHhhhhhc
Q 010623 477 -FPSPYRFWIGARIITV---CILPAMLDNQIFL 505 (506)
Q Consensus 477 -~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 505 (506)
++.|.+.|+++.++|. +++|+++.|+.+|
T Consensus 499 ~~~~~~~~~~~~~~~~~a~~~~~p~~~~e~~~~ 531 (567)
T PTZ00367 499 FFVDPERIKHALYLLGAATTIAAPLAKSEFVSL 531 (567)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999 9999999998765
No 4
>PRK06126 hypothetical protein; Provisional
Probab=100.00 E-value=8.5e-49 Score=413.48 Aligned_cols=407 Identities=22% Similarity=0.255 Sum_probs=284.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccce--ecceEEE-
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQR--VFGYALF- 135 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~--~~~~~~~- 135 (506)
.++||+||||||+||++|+.|+++|++|+|+||.+.....+++..++++++++|+++|+++.+.+..... ......+
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~ 85 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFT 85 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEe
Confidence 4689999999999999999999999999999999877777888889999999999999999887754221 0111111
Q ss_pred -ECCcee-eeecCCcC------------CCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEE
Q 010623 136 -KDGNRT-QISYPLEK------------FHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQY 200 (506)
Q Consensus 136 -~~~~~~-~~~~~~~~------------~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v 200 (506)
..+... ...++... +......+.++|..+++.|.+.+.+.+++++++++ |+++.++++++. +++
T Consensus 86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~-v~~ 164 (545)
T PRK06126 86 RLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVT-ATV 164 (545)
T ss_pred cCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEE-EEE
Confidence 122211 11111100 01112245688999999999999887789999885 999998887665 555
Q ss_pred Ee-CCccEEEEEcCeEEeecCCcccchhhccCCCCCCcc--ceeeEEEeccCC----CCC-CeeEEEecCCCcEEEEecC
Q 010623 201 KT-KAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPS--CFVGLVLENCNL----PFE-NHGHVVLADPSPILFYPIS 272 (506)
Q Consensus 201 ~~-~~G~~~~i~a~~vV~AdG~~S~vR~~l~~~~~~~~~--~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~p~~ 272 (506)
.+ .+|++.++++|+||+|||++|.+|+++++...+... ....+.+...++ +.. ...++++.++....+++..
T Consensus 165 ~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~ 244 (545)
T PRK06126 165 EDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFNPDRRGVLVAID 244 (545)
T ss_pred EECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhcCCCceEEEEECCCccEEEEEEC
Confidence 54 567767889999999999999999999987654432 122222221111 111 1233445555566677776
Q ss_pred CCeEEEEEE-ecCC-CCCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCC
Q 010623 273 SNEVRCLVD-IPGQ-KVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFN 350 (506)
Q Consensus 273 ~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh 350 (506)
++. .|.+. .+.. .....+.+++.+.+++.+.+.++.++ .....|......+++|..|||+|+|||||
T Consensus 245 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----------~~~~~w~~~~~~a~~~~~gRv~L~GDAAH 313 (545)
T PRK06126 245 GRD-EWLFHQLRGGEDEFTIDDVDARAFVRRGVGEDIDYEV----------LSVVPWTGRRLVADSYRRGRVFLAGDAAH 313 (545)
T ss_pred CCC-eEEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCeEE----------EeecccchhheehhhhccCCEEEechhhc
Confidence 554 45444 3322 22234556677777765543222111 12234556667789999999999999999
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCC--------Cchh
Q 010623 351 MRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSAS--------PDEA 422 (506)
Q Consensus 351 ~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~--------~~~~ 422 (506)
.++|++|||+|+||+||.+|+|+|+.+.+ +.+.+++|++|+++|+|++..++..+..+...+... +++.
T Consensus 314 ~~~P~~GqG~N~gieDa~~La~~La~~~~---~~~~~~lL~~Y~~eR~p~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 390 (545)
T PRK06126 314 LFTPTGGYGMNTGIGDAVNLAWKLAAVLN---GWAGPALLDSYEAERRPIAARNTDYARRNADALGSFPVPPEIEDDGPA 390 (545)
T ss_pred cCCCCcCcccchhHHHHHHHHHHHHHHHc---CCCcHHHHhhhHHHhhHHHHHHHHHHHHHHHHhcccccchhhccCChh
Confidence 99999999999999999999999997642 233468999999999999999999888776655321 1233
Q ss_pred HHHHHHHHHHHH-------------hcCCCCchhHHHhhc------------CCCCCchhhHHHHHH------HHHHHHH
Q 010623 423 RKEMRQACFDYL-------------SLGGIFSSGPVSLLS------------GLNPRPLILVFHFFA------VAIYGVG 471 (506)
Q Consensus 423 ~~~~r~~~~~~~-------------~~g~~~~~~~~~~~~------------~~~~~p~~~~~h~~~------~~l~~~~ 471 (506)
...+|+.+.+++ ..|++|.++++...+ ...++||.|+||.|+ +||+|.+
T Consensus 391 ~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~pG~r~ph~~l~~~~s~~dl~g~~ 470 (545)
T PRK06126 391 GDAARRKVGDALSEHARQEFNSPGITLGYRYDGSPIIVPDGTPPPPDDPGVYVPSACPGGRAPHAWLSDGRSLYDLFGPG 470 (545)
T ss_pred HHHHHHHHHHHHhhccccccccceeeecceecCCceecCCCCCCCCCcccccccCCCCCcCCCCeeecCCcchHHhcCCc
Confidence 344555554433 267888887765422 124789999999997 9999999
Q ss_pred HhhccCCCh
Q 010623 472 RILLPFPSP 480 (506)
Q Consensus 472 ~~l~~~~~~ 480 (506)
|+|+++...
T Consensus 471 f~Ll~~~~~ 479 (545)
T PRK06126 471 FTLLRFGDA 479 (545)
T ss_pred eEEEecCCC
Confidence 999997653
No 5
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=2.2e-47 Score=385.49 Aligned_cols=364 Identities=25% Similarity=0.315 Sum_probs=281.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD-LSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG 138 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~-~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 138 (506)
.+||+||||||+||++|+.|++.|++|+|+||. .......++..++++++++|+++|+.+.+......+.....++.++
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 589999999999999999999999999999998 3444566888999999999999999766666555455555555544
Q ss_pred ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623 139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV 217 (506)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~ 217 (506)
. ....++.........++.++|..+.+.|.+.+.+.++++++.++ |+.+.++++.+. +++.. ||+ +++||+||+
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~-v~l~~-dG~--~~~a~llVg 156 (387)
T COG0654 82 R-RLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVT-VTLSF-DGE--TLDADLLVG 156 (387)
T ss_pred c-eeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceE-EEEcC-CCc--EEecCEEEE
Confidence 4 33444444444466778999999999999999999889999985 999999988665 66554 887 577999999
Q ss_pred ecCCcccchhhccCCC-CCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCC---CCCCCc
Q 010623 218 CDGCFSNLRRSLCNPK-VDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK---VPSISN 292 (506)
Q Consensus 218 AdG~~S~vR~~l~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~~~~ 292 (506)
|||.+|.+|+++++.. ....+...++... ..+.+.......++.+.+++.++|++++.....|..+... ...++.
T Consensus 157 ADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (387)
T COG0654 157 ADGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEPHEGRAGERFTHAGPFALLPLPDNRSSVVWSLPPGPAEDLQGLSD 236 (387)
T ss_pred CCCCchHHHHhcCCCCccCCCCCceEEEEEeecCCCCCCeEEEEecCCCceEEEecCCCceeEEEECChhhHHHHhcCCH
Confidence 9999999999999433 3334445554443 3334666777788899999999999977667777666432 233444
Q ss_pred hHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHH
Q 010623 293 GEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRN 372 (506)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~ 372 (506)
+.....+.+.+....+ +...........+|+....+.+|..+||+|+|||||.++|++|||+|+||+||.+|++
T Consensus 237 ~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~ 310 (387)
T COG0654 237 EEFLRELQRRLGERDP------LGRVTLVSSRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAE 310 (387)
T ss_pred HHHHHHHHHhcCcccc------cceEEEccccccccccchhhhheecCcEEEEeeccccCCCccccchhhhhhhHHHHHH
Confidence 4444444443322111 1122233456678888888999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCC
Q 010623 373 LLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGG 438 (506)
Q Consensus 373 ~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ 438 (506)
+|.+....+. + +.+|+.|+++|++++..++..++.+.+.|... .+....+|+..+.++...+
T Consensus 311 ~L~~~~~~~~--~-~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~-~~~~~~~r~~~l~~~~~~~ 372 (387)
T COG0654 311 ALAAAPRPGA--D-AAALAAYEARRRPRAEAIQKLSRALGRLFSAD-GPFARFLRNLGLRLLDRLP 372 (387)
T ss_pred HHHHHhhcCc--c-HHHHHHHHHhhhhHHHHHHHHHHHHhhhhccC-CcHHHHHHHHHHHhhccCc
Confidence 9998643111 1 78999999999999999999999999999987 8899999999988875444
No 6
>PRK08013 oxidoreductase; Provisional
Probab=100.00 E-value=4.2e-47 Score=385.58 Aligned_cols=377 Identities=19% Similarity=0.213 Sum_probs=263.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCc------ccccccccchHHHHHHhCchhHHhhcccceecceE
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDR------IVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYA 133 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~------~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 133 (506)
++||+||||||+|+++|+.|+++|++|+|+||.+.+... .++..++++++++|+++|+++.+......+..+..
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 589999999999999999999999999999998764321 24456899999999999999988764444556666
Q ss_pred EEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEc
Q 010623 134 LFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYA 212 (506)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a 212 (506)
+++........+..........++.++|..|++.|.+.+.+.+++++++++ |++++++++. ++++..+|+ +++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~---v~v~~~~g~--~i~a 157 (400)
T PRK08013 83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE---AFLTLKDGS--MLTA 157 (400)
T ss_pred EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe---EEEEEcCCC--EEEe
Confidence 665432222233222222233457899999999999999988789998885 9999887764 455566776 4779
Q ss_pred CeEEeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCe-EEEEEEecCCCCC--
Q 010623 213 PLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNE-VRCLVDIPGQKVP-- 288 (506)
Q Consensus 213 ~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~-- 288 (506)
|+||+|||.+|.+|++++++.....+...++... ..+.+.......++..++++.++|..++. .++++..+.+..+
T Consensus 158 ~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~ 237 (400)
T PRK08013 158 RLVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHDAVARQVFHGDGILAFLPLSDPHLCSIVWSLSPEEAQRM 237 (400)
T ss_pred eEEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccCCCCCEEEEEEcCCCCEEEEECCCCCeEEEEEEcCHHHHHHH
Confidence 9999999999999999998765554444433322 22233333445566677788999998754 4666665532111
Q ss_pred -CCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHH
Q 010623 289 -SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDI 367 (506)
Q Consensus 289 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da 367 (506)
....+++.+.+...+ ++.+. ...-......++.....+++|..|||+|+|||||.++|++|||+|+||+||
T Consensus 238 ~~~~~~~~~~~l~~~~----~~~l~----~~~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gi~Da 309 (400)
T PRK08013 238 QQAPEEEFNRALAIAF----DNRLG----LCELESERQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDA 309 (400)
T ss_pred HcCCHHHHHHHHHHHH----hHhhC----ceEecCCccEEecceeecccccCCcEEEEechhhcCCccccCchhhhHHHH
Confidence 112222333222211 11110 000011223566666678999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCchhHHHh
Q 010623 368 VILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSL 447 (506)
Q Consensus 368 ~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~ 447 (506)
.+|+++|......+.......+|++|+++|++++..++..++.+.++|..+ ++....+|+..+..+...+......+..
T Consensus 310 ~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~l~~~~-~~~~~~~R~~~l~~~~~~~~~~~~~~~~ 388 (400)
T PRK08013 310 AELIAELRRLHRQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFRDLFAGN-NPAKKLLRDIGLKLADTLPGVKPQLIRQ 388 (400)
T ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 999999986432111111235899999999999999999999999999876 8888899999888775544333333333
Q ss_pred hcC
Q 010623 448 LSG 450 (506)
Q Consensus 448 ~~~ 450 (506)
+.|
T Consensus 389 ~~g 391 (400)
T PRK08013 389 AMG 391 (400)
T ss_pred Hcc
Confidence 344
No 7
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=100.00 E-value=4.8e-47 Score=386.20 Aligned_cols=379 Identities=21% Similarity=0.224 Sum_probs=272.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCC----CcccccccccchHHHHHHhCchhHHhhcccceecceE
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD-LSEP----DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYA 133 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~-~~~~----~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 133 (506)
..+||+||||||+|+++|+.|+++|++|+|+|+. +... ...++..++++++++|+++|+++.+.+....+...+.
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~ 82 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAME 82 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEE
Confidence 3689999999999999999999999999999996 3211 2346678999999999999999998765445566677
Q ss_pred EEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEc
Q 010623 134 LFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYA 212 (506)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a 212 (506)
+|+........++.........++.+++..+.+.|.+.+.+.++++++.+ +|+++.++++. +.+..++|+ +++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~---~~v~~~~g~--~~~a 157 (405)
T PRK08850 83 VWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE---AWLTLDNGQ--ALTA 157 (405)
T ss_pred EEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe---EEEEECCCC--EEEe
Confidence 77654333333433322233456778899999999999988778999888 59999887764 445567776 4679
Q ss_pred CeEEeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCC-eEEEEEEecCCCC---
Q 010623 213 PLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSN-EVRCLVDIPGQKV--- 287 (506)
Q Consensus 213 ~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~--- 287 (506)
|+||+|||.+|.+|+.++++.....+...++... ..+.+.....+.++++++++.++|+.++ ..++.|..+.+..
T Consensus 158 ~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lp~~~~~~~~~~w~~~~~~~~~~ 237 (405)
T PRK08850 158 KLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVDPHNSVARQIFTPQGPLAFLPMSEPNMSSIVWSTEPLRAEAL 237 (405)
T ss_pred CEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccCCCCCEEEEEEcCCCceEEEECCCCCeEEEEEECCHHHHHHH
Confidence 9999999999999999998765444433333322 2233344445667888889999999864 4566676653211
Q ss_pred CCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHH
Q 010623 288 PSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDI 367 (506)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da 367 (506)
...+.+++.+.+.+.+.+.+. ..........+|.....+.+|.++||+|+|||||.++|+.|||+|+||+||
T Consensus 238 ~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~pl~~~~~~~~~~~rv~LiGDAAH~~~P~~GQG~n~ai~Da 309 (405)
T PRK08850 238 LAMSDEQFNKALTAEFDNRLG--------LCEVVGERQAFPLKMRYARDFVRERVALVGDAAHTIHPLAGQGVNLGLLDA 309 (405)
T ss_pred HcCCHHHHHHHHHHHHhhhhC--------cEEEcccccEEecceeeccccccCcEEEEEhhhhcCCccccccHHHHHHHH
Confidence 122233344333332211110 000011234566666678899999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCchhHHHh
Q 010623 368 VILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSL 447 (506)
Q Consensus 368 ~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~ 447 (506)
.+|+|+|......+.+...+.+|++|+++|++++..++..++.+.++|... ++....+|+..+..+..-+......+..
T Consensus 310 ~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~-~~~~~~~R~~~l~~~~~~~~~k~~~~~~ 388 (405)
T PRK08850 310 ASLAQEILALWQQGRDIGLKRNLRGYERWRKAEAAKMIAAMQGFRDLFSGS-NPAKKLVRGIGMSLAGQLPGAKDEIMKR 388 (405)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 999999986532222223468999999999999999999999999999876 7888999999988777655444444444
Q ss_pred hcCC
Q 010623 448 LSGL 451 (506)
Q Consensus 448 ~~~~ 451 (506)
..|+
T Consensus 389 ~~g~ 392 (405)
T PRK08850 389 ALGL 392 (405)
T ss_pred HhCC
Confidence 4444
No 8
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=100.00 E-value=5.7e-47 Score=399.23 Aligned_cols=402 Identities=18% Similarity=0.159 Sum_probs=275.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG 138 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 138 (506)
.++||+||||||+||++|+.|+++|++|+|+||.+.....+++..++++++++|+++|+.+.+.+.... ......+..+
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~-~~~~~~~~~~ 100 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVS-WNVGKVFLRD 100 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCce-eeceeEEeCC
Confidence 568999999999999999999999999999999987766677888999999999999999888664322 2222233222
Q ss_pred ceeeeecCCcC-C-CCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeE
Q 010623 139 NRTQISYPLEK-F-HSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLT 215 (506)
Q Consensus 139 ~~~~~~~~~~~-~-~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~v 215 (506)
.. ...++... . ...+....++|..+++.|.+.+.+.+++++++++ ++++.++++.+. +++.+.+|+ .+++||+|
T Consensus 101 ~~-~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~-v~~~~~~g~-~~i~ad~v 177 (547)
T PRK08132 101 EE-VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVT-LTVETPDGP-YTLEADWV 177 (547)
T ss_pred Ce-EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEE-EEEECCCCc-EEEEeCEE
Confidence 21 12222111 1 1112234578889999999999988788998885 999988877554 555555554 45789999
Q ss_pred EeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEec----CCCcEEEEecCCCeEEEEEEecCCCC--C
Q 010623 216 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLA----DPSPILFYPISSNEVRCLVDIPGQKV--P 288 (506)
Q Consensus 216 V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~--~ 288 (506)
|+|||.+|.+|+.++++..+.......++.. ..+.+.+.....++. ++..+++.|..++.+++.+....... .
T Consensus 178 VgADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (547)
T PRK08132 178 IACDGARSPLREMLGLEFEGRTFEDRFLIADVKMKADFPTERWFWFDPPFHPGQSVLLHRQPDNVWRIDFQLGWDADPEA 257 (547)
T ss_pred EECCCCCcHHHHHcCCCCCCccccceEEEEEEEecCCCCCeeeEEEeccCCCCcEEEEEeCCCCeEEEEEecCCCCCchh
Confidence 9999999999999998766544333222221 111122223334443 23345556666665444443332211 1
Q ss_pred CCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHH
Q 010623 289 SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 368 (506)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~ 368 (506)
..+.+++.+.+++.+.+..+ ........|+.....+++|++|||+|+|||||.++|++|||+|+||+||.
T Consensus 258 ~~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~DA~ 327 (547)
T PRK08132 258 EKKPENVIPRVRALLGEDVP----------FELEWVSVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARGANSGIQDAD 327 (547)
T ss_pred hcCHHHHHHHHHHHcCCCCC----------eeEEEEEeeeeeeeeecccccccEEEEecccccCCCcccccccchHHHHH
Confidence 12334444445443321100 01112234556667789999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHH--------------
Q 010623 369 ILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYL-------------- 434 (506)
Q Consensus 369 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~-------------- 434 (506)
+|+|+|+.+.. +.+.+++|++|++||+|+++.++..+..+..++... ++....+|+..+..+
T Consensus 328 ~LawkLa~vl~---g~~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 403 (547)
T PRK08132 328 NLAWKLALVLR---GRAPDSLLDSYASEREFAADENIRNSTRSTDFITPK-SPVSRLFRDAVLRLARDHPFARRLVNSGR 403 (547)
T ss_pred HHHHHHHHHHc---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-CHHHHHHHHHHHhhhcccHHHHHHHhccc
Confidence 99999998653 234578999999999999999999888888877654 566666676554321
Q ss_pred -hcCCCCchhHHHhhc----CCCCCchhhHHHHHH---------HHHHHHHHhhccCC
Q 010623 435 -SLGGIFSSGPVSLLS----GLNPRPLILVFHFFA---------VAIYGVGRILLPFP 478 (506)
Q Consensus 435 -~~g~~~~~~~~~~~~----~~~~~p~~~~~h~~~---------~~l~~~~~~l~~~~ 478 (506)
..+..|..+++...+ ...++||.|+||.|+ .|++|.+|+|+.+.
T Consensus 404 ~~~~~~y~~~~~~~~~~~~~~~~~~pG~r~p~~~~~~~~~~~~l~dl~g~~f~ll~~~ 461 (547)
T PRK08132 404 LSVPAVYADSPLNTPDGDAFAGGPVPGAPAPDAPVRADGEPGWLLDLLGGGFTLLLFG 461 (547)
T ss_pred cccCcccCCCCCCCCcccccCCCCCCCCCCCCCcccCCCCceEHHHhcCCCEEEEEec
Confidence 234567666653211 124679999999985 88999999999754
No 9
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=100.00 E-value=1.1e-46 Score=396.06 Aligned_cols=404 Identities=22% Similarity=0.201 Sum_probs=284.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD 137 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 137 (506)
..++||+||||||+||++|+.|+++|++|+|+||.+.....+++..++++++++|+++|+.+.+.+.. .+..++.+++.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~-~~~~~~~~~~~ 86 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHT-TPNHGMRFLDA 86 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhc-ccCCceEEEcC
Confidence 34689999999999999999999999999999999877777788889999999999999998887643 23345555543
Q ss_pred CceeeeecCCcCC--CCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCe
Q 010623 138 GNRTQISYPLEKF--HSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPL 214 (506)
Q Consensus 138 ~~~~~~~~~~~~~--~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~ 214 (506)
.......++.... ...+....++|..+++.|.+.+.+.++++++++ +|+++++++++++ +++++.+|++.+++||+
T Consensus 87 ~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~-v~~~~~~G~~~~i~ad~ 165 (538)
T PRK06183 87 KGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVT-VTLTDADGQRETVRARY 165 (538)
T ss_pred CCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEE-EEEEcCCCCEEEEEEEE
Confidence 2222222321110 011223567899999999999988778999988 4999998888654 55555578666789999
Q ss_pred EEeecCCcccchhhccCCCCCCccceeeEEEe--cc-CCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCC-CCCC
Q 010623 215 TIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE--NC-NLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK-VPSI 290 (506)
Q Consensus 215 vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~ 290 (506)
||+|||.+|.+|+++++...+..+....+.+. .. ..........++.+++++.++|.+++..+|.+...+.. ....
T Consensus 166 vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~ 245 (538)
T PRK06183 166 VVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYCDPARPYTSVRLPHGRRRWEFMLLPGETEEQL 245 (538)
T ss_pred EEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEEEECCCCCEEEEEcCCCeEEEEEEeCCCCChhhc
Confidence 99999999999999988655444333222221 11 11122234566778888999999988877877654322 1122
Q ss_pred -CchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHH
Q 010623 291 -SNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVI 369 (506)
Q Consensus 291 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~ 369 (506)
+.+.+.+.+..+. ..+... +......+......+.+|++|||+|+|||||.++|++|||+|+||+||.+
T Consensus 246 ~~~~~~~~~l~~~~---~~~~~~-------~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~ 315 (538)
T PRK06183 246 ASPENVWRLLAPWG---PTPDDA-------ELIRHAVYTFHARVADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDAAN 315 (538)
T ss_pred CCHHHHHHHHHhhC---CCCcce-------EEEEEEeeeEccEEhhhhccCCEEEEechhhcCCCccccchhhhHHHHHH
Confidence 2334444443321 000000 00122334445556789999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcC------------
Q 010623 370 LRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLG------------ 437 (506)
Q Consensus 370 La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g------------ 437 (506)
|+|+|+.+.. +.+.+++|++|+++|+|++..++..+..+.+++... ++....+|+..+..+...
T Consensus 316 La~kLa~~~~---g~~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~~~~~~-~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~ 391 (538)
T PRK06183 316 LAWKLAAVLR---GRAGDALLDTYEQERRPHARAMIDLAVRLGRVICPT-DRLAAALRDAVLRALNYLPPLKRYVLEMRF 391 (538)
T ss_pred HHHHHHHHHc---CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHhhhcCcchhhhhhhccC
Confidence 9999987642 233568999999999999999999999999998876 888889999877654322
Q ss_pred ---CCCchhHHHhh-cCCCCCchhhHHHHHH----------HHHHHHHHhhccC
Q 010623 438 ---GIFSSGPVSLL-SGLNPRPLILVFHFFA----------VAIYGVGRILLPF 477 (506)
Q Consensus 438 ---~~~~~~~~~~~-~~~~~~p~~~~~h~~~----------~~l~~~~~~l~~~ 477 (506)
..|..+++... ....+.+|.++|+.++ -++.|.+|+|+..
T Consensus 392 ~~~~~y~~~~~~~~~~~~~~~~G~~~p~~~~~~~~~~~~~~d~~~~~~~~ll~~ 445 (538)
T PRK06183 392 KPMPRLTGGAVVREGEAKHSPVGTLFPQPRVELGGGDRGLLDDVLGPGFAVLGW 445 (538)
T ss_pred CCCCcccccccccCcccCCCCcccCcCCCeeEcCCCCcccchhccCCceEEEEe
Confidence 22322221100 1123568888888754 3477888999864
No 10
>PRK08244 hypothetical protein; Provisional
Probab=100.00 E-value=2.9e-46 Score=389.48 Aligned_cols=395 Identities=19% Similarity=0.183 Sum_probs=275.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 139 (506)
++||+||||||+||++|+.|+++|++|+|+||.+.+...+++..++++++++|+++|+++.+.+.. .+.....++....
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~-~~~~~~~~~~~~~ 80 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKG-RKLPSGHFAGLDT 80 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhc-ccccceEEecccc
Confidence 589999999999999999999999999999999887777788899999999999999998887643 2222333322111
Q ss_pred eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623 140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC 218 (506)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A 218 (506)
...+.... ...+..+.++|..+++.|.+.+.+. +++++++ +++++.++++++. +++.+.+|+ .+++||+||+|
T Consensus 81 --~~~~~~~~-~~~~~~~~i~q~~le~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~v~-v~~~~~~g~-~~i~a~~vVgA 154 (493)
T PRK08244 81 --RLDFSALD-TSSNYTLFLPQAETEKVLEEHARSL-GVEIFRGAEVLAVRQDGDGVE-VVVRGPDGL-RTLTSSYVVGA 154 (493)
T ss_pred --cCCcccCC-CCCCcEEEecHHHHHHHHHHHHHHc-CCeEEeCCEEEEEEEcCCeEE-EEEEeCCcc-EEEEeCEEEEC
Confidence 11111001 1123345789999999999999887 6888888 5999988877654 555555663 46889999999
Q ss_pred cCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCC----CCCCCch
Q 010623 219 DGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK----VPSISNG 293 (506)
Q Consensus 219 dG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~----~~~~~~~ 293 (506)
||.+|.+|++++++..+....+.++... ....+.+.....++.++++++++|++++..++.+..+... ....+.+
T Consensus 155 DG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (493)
T PRK08244 155 DGAGSIVRKQAGIAFPGTDATFTAMLGDVVLKDPPPSSVLSLCTREGGVMIVPLSGGIYRVLIIDPERPQVPKDEPVTLE 234 (493)
T ss_pred CCCChHHHHhcCCCccCCCcceEEEEEEEEecCCCCcceeEEEeCCceEEEEECCCCeEEEEEEcCCcccccCCCCCCHH
Confidence 9999999999998766555444444322 1122222234455677889999999988877766544221 1123445
Q ss_pred HHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHH
Q 010623 294 EMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNL 373 (506)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~ 373 (506)
++.+.+.+.....+. .........++.....+++|.+|||+|+|||||.++|++|||+|+||+||.+|+|+
T Consensus 235 ~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~ 305 (493)
T PRK08244 235 ELKTSLIRICGTDFG---------LNDPVWMSRFGNATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWK 305 (493)
T ss_pred HHHHHHHHhhCCCCC---------cCCeeEEEecccceeeHhhhccCcEEEeecceeccCCccccccccchhhHHHHHHH
Confidence 555555544322111 00112334566666778899999999999999999999999999999999999999
Q ss_pred hhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHh--------------cCCC
Q 010623 374 LRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLS--------------LGGI 439 (506)
Q Consensus 374 L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~--------------~g~~ 439 (506)
|+.+.+ +...+.+|++|+++|+|++..++..+..+.+++.. ++....+|+....++. .+..
T Consensus 306 La~~l~---g~~~~~lL~~Ye~eR~~~~~~~~~~~~~~~~~~~~--~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (493)
T PRK08244 306 LAAAIK---GWAPDWLLDSYHAERHPVGTALLRNTEVQTKLFDF--TRPGLALRSMLSDLLGFPEVNRYLAGQISALDVH 380 (493)
T ss_pred HHHHHc---CCCCchhhhhhHHHHHHHHHHHHHHhHHHHHHhcC--CchhHHHHHHHHHHhcchHHHHHHHHHHhcCCcc
Confidence 997652 23346799999999999999999888888888754 3455566665433322 2223
Q ss_pred CchhHHHhhcCCCCCchhhHHHHHH----------HHHHHHH-HhhccCC
Q 010623 440 FSSGPVSLLSGLNPRPLILVFHFFA----------VAIYGVG-RILLPFP 478 (506)
Q Consensus 440 ~~~~~~~~~~~~~~~p~~~~~h~~~----------~~l~~~~-~~l~~~~ 478 (506)
|..++. ....+.||.++||.|+ .|+++.+ |+|+.+.
T Consensus 381 Y~~~~~---~~~~~~~G~r~p~~~~~~~~~~~~~l~~~~~~~~~~ll~~~ 427 (493)
T PRK08244 381 YEPDAE---MPPHPLNGKRLPDLELTLSDGESERLYSLLHKGTFLLLSFG 427 (493)
T ss_pred cCCCCc---cCCCCCCCCCCCCcceecCCCCceeHHHhhcCCeEEEEEec
Confidence 321110 0123578999999875 6777654 8888643
No 11
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=100.00 E-value=1.5e-45 Score=377.83 Aligned_cols=371 Identities=16% Similarity=0.190 Sum_probs=268.7
Q ss_pred CcEEEECCCHHHHHHHHHHHH----CCCcEEEEecCCCCCC------------cccccccccchHHHHHHhCchhHHhhc
Q 010623 61 ADVIVVGAGVAGAALANTLAK----DGRRVHVIERDLSEPD------------RIVGELLQPGGYLKLIELGLEDCVEQI 124 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~----~G~~v~vvE~~~~~~~------------~~~g~~l~~~~~~~l~~~g~~~~~~~~ 124 (506)
+||+||||||+|+++|+.|++ +|++|+|+||++.+.. ..++..++++++++|+++|+++.+.+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 699999999999999999999 8999999999643321 245778999999999999999988765
Q ss_pred ccceecceEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCC--CEEEEece-EEEEEee----CCeEEE
Q 010623 125 DAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLP--NVRLEQGT-VTSLLEE----KGTIKG 197 (506)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~--~v~i~~~~-v~~~~~~----~~~v~~ 197 (506)
...+...+.+++........++... ...+.++.++|..+.+.|.+.+.+.+ ++++++++ |++++.+ ++...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~ 159 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDN-GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNW 159 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCC-CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCc
Confidence 4445555666654332233333222 23345678999999999999998886 68998885 9998742 111124
Q ss_pred EEEEeCCccEEEEEcCeEEeecCCcccchhhccCCCCCCccceeeEEEe-ccC-CCCCCeeEEEecCCCcEEEEecCCCe
Q 010623 198 VQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCN-LPFENHGHVVLADPSPILFYPISSNE 275 (506)
Q Consensus 198 v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~ 275 (506)
+++...+|+ +++||+||+|||.+|.+|+.+++...+..+...+++.. ..+ .+..+..+.++.+++++.++|+.++.
T Consensus 160 v~v~~~~g~--~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~~~g~~~~lPl~~~~ 237 (437)
T TIGR01989 160 VHITLSDGQ--VLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLPTGPIALLPLPDNN 237 (437)
T ss_pred eEEEEcCCC--EEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEEEEECCCCCEEEeECCCCC
Confidence 666677886 47799999999999999999999877665555444432 222 23344556667788899999999888
Q ss_pred EEEEEEecCCCC---CCCCchHHHHHHHHhcC---CCCCh---------hh-----------------hHHHHhhhcCCC
Q 010623 276 VRCLVDIPGQKV---PSISNGEMANYLKTVVA---PQIPR---------EI-----------------FHSFVAAVDGGN 323 (506)
Q Consensus 276 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~---------~~-----------------~~~~~~~~~~~~ 323 (506)
.+++|..+.... ...+.+++.+.+.+.+. ...+. .+ ...+ ..+....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 316 (437)
T TIGR01989 238 STLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSKSCFQVPPRV-IGVVDKS 316 (437)
T ss_pred EEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccCchh-heeeccc
Confidence 888887763321 12344555555543330 00000 00 0000 0111112
Q ss_pred eEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHH
Q 010623 324 IKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVAST 403 (506)
Q Consensus 324 ~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~ 403 (506)
...+|+....+++|..+||+|+|||||.++|++|||+|+||+||.+|+|+|.+....+.....+++|++|+++|++++..
T Consensus 317 ~~~~~~~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~ 396 (437)
T TIGR01989 317 RAAFPLGLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADIGSISSLKPYERERYAKNVV 396 (437)
T ss_pred ceeEEecccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH
Confidence 35677777788999999999999999999999999999999999999999987643222222357999999999999999
Q ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhc
Q 010623 404 INTLAGALYQVFSASPDEARKEMRQACFDYLSL 436 (506)
Q Consensus 404 ~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 436 (506)
++..++.+.++|..+ ++....+|+..+..+..
T Consensus 397 v~~~t~~l~~l~~~~-~~~~~~~R~~~l~~~~~ 428 (437)
T TIGR01989 397 LLGLVDKLHKLYATD-FPPVVALRTFGLNLTNY 428 (437)
T ss_pred HHHHHHHHHHHHcCC-ccHHHHHHHHHHHHhhh
Confidence 999999999999986 78888999998877654
No 12
>PRK06184 hypothetical protein; Provisional
Probab=100.00 E-value=8.3e-46 Score=386.66 Aligned_cols=395 Identities=20% Similarity=0.178 Sum_probs=270.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 139 (506)
++||+||||||+||++|+.|+++|++|+|+||.+.+...+++..++++++++|+++|+.+.+.+... .......+..+.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~-~~~~~~~~~~~~ 81 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGG-LYPPMRIYRDDG 81 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCc-cccceeEEeCCc
Confidence 5899999999999999999999999999999998877778888999999999999999988876432 233344454332
Q ss_pred ee-eeecCC--cC--CCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcC
Q 010623 140 RT-QISYPL--EK--FHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAP 213 (506)
Q Consensus 140 ~~-~~~~~~--~~--~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~ 213 (506)
.. ...+.. .. ....+....++|..+++.|.+.+.+. +++++++ ++++++++++.++ +++...++. .+++||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~-gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~~-~~i~a~ 158 (502)
T PRK06184 82 SVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAEL-GHRVEFGCELVGFEQDADGVT-ARVAGPAGE-ETVRAR 158 (502)
T ss_pred eEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHC-CCEEEeCcEEEEEEEcCCcEE-EEEEeCCCe-EEEEeC
Confidence 21 111110 00 01112345788999999999999887 6888888 5999998877654 444332332 368899
Q ss_pred eEEeecCCcccchhhccCCCCCCccce-eeEEEe-ccCCCCCCeeEEEecCC-CcEEEEecCCCe-EEEEEEecCCCCCC
Q 010623 214 LTIVCDGCFSNLRRSLCNPKVDVPSCF-VGLVLE-NCNLPFENHGHVVLADP-SPILFYPISSNE-VRCLVDIPGQKVPS 289 (506)
Q Consensus 214 ~vV~AdG~~S~vR~~l~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~-~~~~~~~~~~~~~~ 289 (506)
+||+|||++|.+|+++++...+..... ..++.. ............+..+. +.+.++|+.++. +++.+..+.+..+.
T Consensus 159 ~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 238 (502)
T PRK06184 159 YLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGLDRDAWHQWPDGDMGMIALCPLPGTDLFQIQAPLPPGGEPD 238 (502)
T ss_pred EEEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecCCCcceEEccCCCCcEEEEEEccCCCeEEEEEEcCCCccCC
Confidence 999999999999999998776554332 233221 11111122233344444 677888987654 33444444333334
Q ss_pred CCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHH
Q 010623 290 ISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVI 369 (506)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~ 369 (506)
.+.+++.+.++...... .+. .........|+.....+++|..|||+|+|||||.++|++|||||+||+||.+
T Consensus 239 ~~~~~~~~~l~~~~~~~---~~~-----~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~ 310 (502)
T PRK06184 239 LSADGLTALLAERTGRT---DIR-----LHSVTWASAFRMNARLADRYRVGRVFLAGDAAHVHPPAGGQGLNTSVQDAYN 310 (502)
T ss_pred CCHHHHHHHHHHhcCCC---Ccc-----eeeeeeeeccccceeEhhhhcCCcEEEeccccccCCCcccccccchHHHHHH
Confidence 45666666666643311 110 0011223455666666789999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCchhHHHhhc
Q 010623 370 LRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLS 449 (506)
Q Consensus 370 La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~ 449 (506)
|+|+|+.+.+. +.+++|++|+++|+|++..++..+..+.+.+... +. .+.. .....+..|..+++....
T Consensus 311 LawkLa~vl~g----~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~~~-~~----~~~~--~~~~~~~~y~~~~~~~~~ 379 (502)
T PRK06184 311 LGWKLAAVLAG----APEALLDTYEEERRPVAAAVLGLSTELLDAIKRG-DM----RRGR--DVQQLDLGYRGSSLAVDG 379 (502)
T ss_pred HHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-Hh----hccc--chhcceeecCCCcccCCC
Confidence 99999976532 3468999999999999999999988877775432 11 1111 122345556666554221
Q ss_pred ---CCCCCchhhHHHHHH----------HHHHH-HHHhhccC
Q 010623 450 ---GLNPRPLILVFHFFA----------VAIYG-VGRILLPF 477 (506)
Q Consensus 450 ---~~~~~p~~~~~h~~~----------~~l~~-~~~~l~~~ 477 (506)
...++||.|+||.|+ .|+++ .+|+|+..
T Consensus 380 ~~~~~~~~~G~r~p~~~~~~~~~~~~~l~d~~~~~~~~ll~~ 421 (502)
T PRK06184 380 PERTGGLRAGDRAPDAPLLGAAGQPTRLFDLFRGPHWTLLAF 421 (502)
T ss_pred cccCCCCCCcCCCCCchhccCCCceeeHHHhhCCCcEEEEEe
Confidence 124679999999986 57775 57988863
No 13
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=2e-45 Score=374.67 Aligned_cols=377 Identities=20% Similarity=0.267 Sum_probs=264.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC--------CCcccccccccchHHHHHHhCchhHHhhcccceecc
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE--------PDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFG 131 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~--------~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ 131 (506)
++||+||||||+|+++|+.|+++|++|+|+|+.+.. ....++..++++++++|+++|+++.+.+....+...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 489999999999999999999999999999998621 123456679999999999999998886543344455
Q ss_pred eEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEE
Q 010623 132 YALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTA 210 (506)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i 210 (506)
+.+++........+..........++.+++..+.+.|.+.+.+. +++++.+ +++++++++++ +++...+|+ ++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~---v~v~~~~g~--~~ 155 (405)
T PRK05714 82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDS-DIGLLANARLEQMRRSGDD---WLLTLADGR--QL 155 (405)
T ss_pred EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcC-CCEEEcCCEEEEEEEcCCe---EEEEECCCC--EE
Confidence 56665443333333322222233467788999999999998887 7888877 59999887774 445566775 46
Q ss_pred EcCeEEeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCe----EEEEEEecCC
Q 010623 211 YAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNE----VRCLVDIPGQ 285 (506)
Q Consensus 211 ~a~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~~~~~~~~~~ 285 (506)
+||+||+|||.+|.+|+++++......+...+++.. ....+.....+.++.+.+++.++|++++. ..+.|..+.+
T Consensus 156 ~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~ 235 (405)
T PRK05714 156 RAPLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSEPHRATAWQRFTDDGPLAFLPLERDGDEHWCSIVWSTTPE 235 (405)
T ss_pred EeCEEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcCCCCCCEEEEEcCCCCCeEEeeCCCCCCCCeEEEEEECCHH
Confidence 799999999999999999988655444444444332 12223333345556778899999997432 2233444322
Q ss_pred CC---CCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHH
Q 010623 286 KV---PSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTV 362 (506)
Q Consensus 286 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ 362 (506)
.. ...+.+++.+.+.+.+.+ .+ ...........|++....+.+|..+||+|+|||||.++|++|||+|+
T Consensus 236 ~~~~~~~~~~~~~~~~l~~~~~~----~~----~~~~~~~~~~~~~l~~~~~~~~~~~rv~LlGDAAH~~~P~~GQG~n~ 307 (405)
T PRK05714 236 EAERLMALDDDAFCAALERAFEG----RL----GEVLSADPRLCVPLRQRHAKRYVEPGLALIGDAAHTIHPLAGQGVNL 307 (405)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH----Hh----CCceecCCccEEecceeehhhhccCCEEEEEeccccCCCcccccccH
Confidence 11 112223333333322211 11 11112234456777777789999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCch
Q 010623 363 ALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSS 442 (506)
Q Consensus 363 ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~ 442 (506)
||+||.+|+++|......+.....+.+|+.|+++|++++..++..++.+.++|+.+ ++....+|+..+..+..-+...+
T Consensus 308 al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~~~l~~~~~~~~~k~ 386 (405)
T PRK05714 308 GFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPHNLALMAAMEGFERLFQAD-PLPLRWLRNTGLKLVDQMPEAKA 386 (405)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHHhhCHHHHH
Confidence 99999999999986432111122358999999999999999999999999999886 77888999999887766555544
Q ss_pred hHHHhhcCC
Q 010623 443 GPVSLLSGL 451 (506)
Q Consensus 443 ~~~~~~~~~ 451 (506)
-.+....|.
T Consensus 387 ~~~~~~~g~ 395 (405)
T PRK05714 387 LFVRQALGL 395 (405)
T ss_pred HHHHHHhcC
Confidence 444444443
No 14
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=1.3e-44 Score=364.15 Aligned_cols=351 Identities=17% Similarity=0.260 Sum_probs=256.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC----CcccccccccchHHHHHHhCchhHHhhcccceecceEEEE
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP----DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFK 136 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~----~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 136 (506)
+||+||||||+|+++|+.|++.|++|+|+|+.+... ...++..++++++++|+++|+++.+... ..+...+.+++
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~-~~~~~~~~~~~ 80 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKF-VAEMQDIYVVD 80 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhh-cCCCcEEEEEE
Confidence 699999999999999999999999999999974322 2357788999999999999999888654 23455566665
Q ss_pred CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeE
Q 010623 137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLT 215 (506)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~v 215 (506)
........++.. .....++.++|.+|.+.|.+.+.+.++++++.+ +++++.+++++ +++...++ +++||+|
T Consensus 81 ~~g~~~~~~~~~--~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~v~~~~~---~~~adlv 152 (374)
T PRK06617 81 NKASEILDLRND--ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY---SIIKFDDK---QIKCNLL 152 (374)
T ss_pred CCCceEEEecCC--CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe---EEEEEcCC---EEeeCEE
Confidence 433323333321 223457889999999999999999877888877 49999888774 34445554 4779999
Q ss_pred EeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCe-EEEEEEecCCCC---CCC
Q 010623 216 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNE-VRCLVDIPGQKV---PSI 290 (506)
Q Consensus 216 V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~---~~~ 290 (506)
|+|||.+|.+|+.++++.....+ ..++.+. ..+.++.+....++...++++++|+.++. ..++|..+.+.. ...
T Consensus 153 IgADG~~S~vR~~l~~~~~~~~y-~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lPl~~~~~~~~vw~~~~~~~~~~~~~ 231 (374)
T PRK06617 153 IICDGANSKVRSHYFANEIEKPY-QTALTFNIKHEKPHENCAMEHFLPLGPFALLPLKDQYASSVIWSTSSDQAALIVNL 231 (374)
T ss_pred EEeCCCCchhHHhcCCCcccccC-CeEEEEEEeccCCCCCEEEEEecCCCCEEEeECCCCCeEEEEEeCCHHHHHHHHcC
Confidence 99999999999999876543333 3333332 22334444445566777889999998875 456666542211 111
Q ss_pred CchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHH
Q 010623 291 SNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVIL 370 (506)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~L 370 (506)
+.+.+.+.+.....+ .+. ..........+|+....+.+|..|||+|+|||||.++|++|||+|+||+||.+|
T Consensus 232 ~~~~~~~~~~~~~~~----~~~----~i~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~L 303 (374)
T PRK06617 232 PVEEVRFLTQRNAGN----SLG----KITIDSEISSFPLKARIANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDIEIL 303 (374)
T ss_pred CHHHHHHHHHHhhch----hcC----ceeeccceeEEEeeeeeccceecCCEEEEEcccccCCCCccccHHHHHHHHHHH
Confidence 222333333322111 111 111122466788877788999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCC
Q 010623 371 RNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIF 440 (506)
Q Consensus 371 a~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~ 440 (506)
++.|.. ..+|+.|+++|+++...++..++.+.++|... .+....+|+..+..+..-+..
T Consensus 304 a~~L~~----------~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f~~~-~~~~~~~R~~~l~~~~~~~~~ 362 (374)
T PRK06617 304 SMIVSN----------NGTLQEYQKLRQEDNFIMYKLTDELNNIFSNY-SKNLRCLRQIGFKVINNFKPI 362 (374)
T ss_pred HHHHcC----------cchHHHHHHHHhHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhcCHHH
Confidence 999842 15899999999999999999999999999976 778889999988877654433
No 15
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=2.3e-44 Score=363.79 Aligned_cols=362 Identities=19% Similarity=0.198 Sum_probs=258.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC------cccccccccchHHHHHHhCchhHHhhcccceecceE
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD------RIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYA 133 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~------~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 133 (506)
.+||+||||||+|+++|+.|++.|++|+|+|+.+.... ..+...++++++++|+++|+++.+.+....+...+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~ 82 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE 82 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence 48999999999999999999999999999998752211 113347899999999999999888654333444444
Q ss_pred EEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEc
Q 010623 134 LFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYA 212 (506)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a 212 (506)
.+..... ...++.........++.+.+..+...|.+.+.+.++++++.++ ++++++++++ ++++.++|+ +++|
T Consensus 83 ~~~~~~~-~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~---~~v~~~~g~--~~~~ 156 (384)
T PRK08849 83 TWEHPEC-RTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG---NRVTLESGA--EIEA 156 (384)
T ss_pred EEeCCCc-eEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe---EEEEECCCC--EEEe
Confidence 5543221 1223322222233457778888999999998888789999885 9999887774 445567776 4679
Q ss_pred CeEEeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCC---CC
Q 010623 213 PLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK---VP 288 (506)
Q Consensus 213 ~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~ 288 (506)
|+||+|||.+|.+|+++++......+...++++. ..+.+..+..+.++.+.++..++|+.++..+++|..++.. ..
T Consensus 157 ~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~pl~~~~~~~~~~~~~~~~~~~~ 236 (384)
T PRK08849 157 KWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETEQPQQDITWQQFTPSGPRSFLPLCGNQGSLVWYDSPKRIKQLS 236 (384)
T ss_pred eEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcCCCCCCEEEEEeCCCCCEEEeEcCCCceEEEEECCHHHHHHHH
Confidence 9999999999999999988655444433333332 2333444455556666677777899877655555443211 11
Q ss_pred CCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHH
Q 010623 289 SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 368 (506)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~ 368 (506)
..+.++..+.+.+.+.+.+. . +.......|++....+.+|..|||+|+|||||.|+|++|||+|+||+||.
T Consensus 237 ~~~~~~~~~~l~~~~~~~~~-~--------~~~~~~~~~~l~~~~~~~~~~grv~LlGDAAH~~~P~~GQG~n~al~Da~ 307 (384)
T PRK08849 237 AMNPEQLRSEILRHFPAELG-E--------IKVLQHGSFPLTRRHAQQYVKNNCVLLGDAAHTINPLAGQGVNLGFKDVD 307 (384)
T ss_pred cCCHHHHHHHHHHHhhhhhC-c--------EEeccceEeeccccccchhccCCEEEEEcccccCCCCccchHhHHHHHHH
Confidence 22344445544443221111 0 11223456777777789999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCch
Q 010623 369 ILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSS 442 (506)
Q Consensus 369 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~ 442 (506)
+|++.|... +...+++|+.|+++|+++...++..++.+.++|+.. ++....+|+..+..+...+....
T Consensus 308 ~L~~~l~~~-----~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~~~l~~~~~~~~~k~ 375 (384)
T PRK08849 308 VLLAETEKQ-----GVLNDASFARYERRRRPDNLLMQTGMDLFYKTFSNS-LTPLKFVRNAALKLAENSGPLKT 375 (384)
T ss_pred HHHHHHHhc-----CCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHhccHHHHH
Confidence 999998742 123468999999999999999999999999999886 67788899998887765554443
No 16
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=3.3e-44 Score=367.24 Aligned_cols=384 Identities=18% Similarity=0.193 Sum_probs=260.5
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC--cccccccccchHHHHHHhCchhHHhhcccceecceE
Q 010623 56 ECPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD--RIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYA 133 (506)
Q Consensus 56 ~~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~--~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 133 (506)
.++.++||+||||||+|+++|+.|+++|++|+|+||.+.... .+.+..++++++++|+++|+++.+.... .+.....
T Consensus 14 ~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~-~~~~~~~ 92 (415)
T PRK07364 14 TRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQI-GKFRQIR 92 (415)
T ss_pred CCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhc-CCccEEE
Confidence 344569999999999999999999999999999999976543 3456679999999999999998876532 2333444
Q ss_pred EEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEc
Q 010623 134 LFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYA 212 (506)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a 212 (506)
+++........+..........++...+..+.+.|.+.+.+.++++++++ ++++++++++.+. |++.+ +++..+++|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~-v~~~~-~~~~~~i~a 170 (415)
T PRK07364 93 LSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAAT-VTLEI-EGKQQTLQS 170 (415)
T ss_pred EEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeE-EEEcc-CCcceEEee
Confidence 44433222223332222222234445556788999999988778999877 5999988777543 44433 333346889
Q ss_pred CeEEeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCC---CC
Q 010623 213 PLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK---VP 288 (506)
Q Consensus 213 ~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~ 288 (506)
|+||+|||.+|.+|+.+++...+......++.+. ..+.+........+.+.++++++|++++..++++..+.+. ..
T Consensus 171 dlvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~ 250 (415)
T PRK07364 171 KLVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAPHNDIAYERFWPSGPFAILPLPGNRCQIVWTAPHAQAKALL 250 (415)
T ss_pred eEEEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccCCCCCEEEEEecCCCCeEEeECCCCCEEEEEECCHHHHHHHH
Confidence 9999999999999999987654433222222211 1222222323333445678899999988877777654321 11
Q ss_pred CCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHH
Q 010623 289 SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 368 (506)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~ 368 (506)
..+.++..+.+.+.+.+... .+. .......++.....+.+|..+|++|+|||||.++|++|||+|+||+||.
T Consensus 251 ~~~~~~~~~~l~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~DA~ 322 (415)
T PRK07364 251 ALPEAEFLAELQQRYGDQLG-KLE-------LLGDRFLFPVQLMQSDRYVQHRLALVGDAAHCCHPVGGQGLNLGIRDAA 322 (415)
T ss_pred CCCHHHHHHHHHHHhhhhhc-Cce-------ecCCCceecchhhhhhhhcCCcEEEEecccccCCCcccccHhHHHHHHH
Confidence 22334444444443322111 110 0123345666666678999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCchhHHHhh
Q 010623 369 ILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLL 448 (506)
Q Consensus 369 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~ 448 (506)
.|+++|......+......++|+.|+++|++++..++..++.+.+++..+ ++....+|+..+..+..-+......+..+
T Consensus 323 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 401 (415)
T PRK07364 323 ALAQVLQTAHQRGEDIGSLAVLKRYERWRKRENWLILGFTDLLDRLFSNQ-WWPLVVVRRLGLWLLRHVPPLKRLALRLM 401 (415)
T ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 99999986431111111247999999999999999999999999999876 77888899988877654433333333334
Q ss_pred cCC
Q 010623 449 SGL 451 (506)
Q Consensus 449 ~~~ 451 (506)
.|+
T Consensus 402 ~g~ 404 (415)
T PRK07364 402 TGL 404 (415)
T ss_pred cCC
Confidence 443
No 17
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=100.00 E-value=8.3e-45 Score=368.51 Aligned_cols=366 Identities=20% Similarity=0.262 Sum_probs=263.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCc-----ccccccccchHHHHHHhCchhHHhhcccceecce
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDR-----IVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGY 132 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~-----~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 132 (506)
...+||+||||||+|+++|+.|+++|++|+|+||.+.+... .+...++++++++|+++|+++.+.+....+....
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRM 83 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEE
Confidence 34689999999999999999999999999999998654322 2334688999999999999998876433444555
Q ss_pred EEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEE
Q 010623 133 ALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAY 211 (506)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~ 211 (506)
.++..+......++.........++.+++..+.+.|.+.+.+. +++++.+ +|+++..++++ ++++.++|+ +++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~-gv~i~~~~~v~~i~~~~~~---v~v~~~~g~--~~~ 157 (392)
T PRK08773 84 RVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAA-GVQLHCPARVVALEQDADR---VRLRLDDGR--RLE 157 (392)
T ss_pred EEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhC-CCEEEcCCeEEEEEecCCe---EEEEECCCC--EEE
Confidence 5665433222334333333344567899999999999999887 7888877 59999887774 445566776 467
Q ss_pred cCeEEeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCCCC--
Q 010623 212 APLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVP-- 288 (506)
Q Consensus 212 a~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-- 288 (506)
||+||+|||.+|.+|+.++++.....+...+++.. ..+.+.....+..+.+++++.++|.+++..+++|.++.+..+
T Consensus 158 a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lP~~~~~~~~~w~~~~~~~~~~ 237 (392)
T PRK08773 158 AALAIAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTEHPHQATAWQRFLPTGPLALLPFADGRSSIVWTLPDAEAERV 237 (392)
T ss_pred eCEEEEecCCCchHHHhhcCCceEEEeccEEEEEEEEccCCCCCEEEEEeCCCCcEEEEECCCCceEEEEECCHHHHHHH
Confidence 99999999999999999987665444444454432 233344444555677788899999998888888877643211
Q ss_pred -CCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHH
Q 010623 289 -SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDI 367 (506)
Q Consensus 289 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da 367 (506)
..+.++..+.+.+.+.+.+. .+. .......+++....+.+|..+||+|+|||||.++|++|||+|+||+||
T Consensus 238 ~~~~~~~~~~~l~~~~~~~~~-~~~-------~~~~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da 309 (392)
T PRK08773 238 LALDEAAFSRELTQAFAARLG-EVR-------VASPRTAFPLRRQLVQQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRDV 309 (392)
T ss_pred HcCCHHHHHHHHHHHHhhhhc-CeE-------ecCCccEeechhhhhhhhcCCcEEEEechhhcCCCchhchhhhhHHHH
Confidence 12223333333332221111 000 011223566666678999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCC
Q 010623 368 VILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGG 438 (506)
Q Consensus 368 ~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ 438 (506)
.+|+++|.+....+.+.....+|++|+++|+++...+....+.+.++|... .+....+|+..+..+..-+
T Consensus 310 ~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~~~~~~~~~~~l~~~f~~~-~~~~~~~r~~~l~~~~~~~ 379 (392)
T PRK08773 310 AALQQLVRQAHARRADWAAPHRLQRWARTRRSDNTVAAYGFDAINRVFSND-EMHLTLLRGSVLGLAGKLP 379 (392)
T ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHhhCH
Confidence 999999987532222233457999999999999888887888999999987 8888999999887766543
No 18
>PRK06185 hypothetical protein; Provisional
Probab=100.00 E-value=6.7e-44 Score=363.95 Aligned_cols=379 Identities=20% Similarity=0.196 Sum_probs=272.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG 138 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 138 (506)
.++||+||||||+|+++|+.|+++|++|+|+|+++......++..+++.+.++|+++|+++.+.+....+...+.++..+
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~ 84 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGG 84 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECC
Confidence 46999999999999999999999999999999987554455678899999999999999988876444455566666555
Q ss_pred cee-eeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623 139 NRT-QISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI 216 (506)
Q Consensus 139 ~~~-~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV 216 (506)
... ...+..... ..+.++.+++..+.+.|.+.+.+.++++++.+ +++++..+++++.+|.+...+|+ .+++||+||
T Consensus 85 ~~~~~~~~~~~~~-~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~-~~i~a~~vI 162 (407)
T PRK06185 85 RTVTLADFSRLPT-PYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGP-GEIRADLVV 162 (407)
T ss_pred eEEEecchhhcCC-CCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCc-EEEEeCEEE
Confidence 322 222221111 12345678899999999999988778999887 59999988888777777666664 457899999
Q ss_pred eecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCCCCCCCchHH
Q 010623 217 VCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEM 295 (506)
Q Consensus 217 ~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (506)
+|||.+|.+|+.++++.....+......+. ....+.++....++.++++++++|.. +..++.+..+.+..........
T Consensus 163 ~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~llP~~-~~~~i~~~~~~~~~~~~~~~~~ 241 (407)
T PRK06185 163 GADGRHSRVRALAGLEVREFGAPMDVLWFRLPREPDDPESLMGRFGPGQGLIMIDRG-DYWQCGYVIPKGGYAALRAAGL 241 (407)
T ss_pred ECCCCchHHHHHcCCCccccCCCceeEEEecCCCCCCCcccceEecCCcEEEEEcCC-CeEEEEEEecCCCchhhhhhhH
Confidence 999999999999988665444332222222 11111222344567788899999997 6677777776544332222222
Q ss_pred HHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHhh
Q 010623 296 ANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLR 375 (506)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~ 375 (506)
.++.+. +...++ .+.+.+...........+++....+.+|..+|++|+|||||.++|++|||+|+||+||..|++.|.
T Consensus 242 ~~~~~~-~~~~~p-~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~ 319 (407)
T PRK06185 242 EAFRER-VAELAP-ELADRVAELKSWDDVKLLDVRVDRLRRWHRPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILA 319 (407)
T ss_pred HHHHHH-HHHhCc-cHHHHHhhcCCccccEEEEEeccccccccCCCeEEEeccccccCcccccchhHHHHHHHHHHHHHH
Confidence 222222 111111 222222222223445667777777889999999999999999999999999999999999999998
Q ss_pred hcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCc--hhHHHHHHHHHHHHhcCCCCchhHH
Q 010623 376 HLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPD--EARKEMRQACFDYLSLGGIFSSGPV 445 (506)
Q Consensus 376 ~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~r~~~~~~~~~g~~~~~~~~ 445 (506)
.....++ ..++.|+.|+++|++....++..++.+.++|..+ . +....+|+..+..+..-+...+..+
T Consensus 320 ~~~~~~~--~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~R~~~l~~~~~~~~~k~~~~ 388 (407)
T PRK06185 320 EPLRRGR--VSDRDLAAVQRRREFPTRVTQALQRRIQRRLLAP-ALAGRGPLGPPLLLRLLNRLPWLRRLPA 388 (407)
T ss_pred HHhccCC--ccHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccc-cccCccccCCchHHHHHHhChhHHHhhH
Confidence 7643221 2348999999999999999999999999999876 5 7788889988887776654443333
No 19
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=100.00 E-value=9.9e-44 Score=376.42 Aligned_cols=350 Identities=18% Similarity=0.203 Sum_probs=245.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEE
Q 010623 57 CPFDADVIVVGAGVAGAALANTLAKD-GRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALF 135 (506)
Q Consensus 57 ~~~~~dVvIVGgG~aGl~~A~~La~~-G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 135 (506)
++.++||+||||||+||++|+.|+++ |++|+|+||.+.....+++.+++++++++|+++|+++.+.+.. .......+|
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g-~~~~~~~~~ 107 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEA-YWINETAFW 107 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhc-ccccceEEE
Confidence 45679999999999999999999995 9999999999877777788889999999999999999887643 344455556
Q ss_pred ECCce--eee----ecC-CcCCCCCcccccccchHHHHHHHHHHHcCCC-EEEEece-EEEEEeeCCe--EEEEEEEeC-
Q 010623 136 KDGNR--TQI----SYP-LEKFHSDVAGRGFHNGRFVQRLREKAASLPN-VRLEQGT-VTSLLEEKGT--IKGVQYKTK- 203 (506)
Q Consensus 136 ~~~~~--~~~----~~~-~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~-v~i~~~~-v~~~~~~~~~--v~~v~v~~~- 203 (506)
..+.. ..+ ... ............++|..+++.|.+.+.+.++ +.+++++ +++++++++. .+.|++.+.
T Consensus 108 ~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~ 187 (634)
T PRK08294 108 KPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTD 187 (634)
T ss_pred cCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECC
Confidence 53221 000 000 0000011112568899999999999988753 6777774 9999876422 123555543
Q ss_pred ---CccEEEEEcCeEEeecCCcccchhhccCCCCCCccceeeEEEe---ccCCCCCCeeE-EEecCCCcEEEEecCCCe-
Q 010623 204 ---AGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE---NCNLPFENHGH-VVLADPSPILFYPISSNE- 275 (506)
Q Consensus 204 ---~G~~~~i~a~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~- 275 (506)
+|++.+++|||||+|||++|.||++++++..+........+.. ..+.|...... +...+++.+.++|..++.
T Consensus 188 ~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~~~~p~~~~~~~~~~~~~g~~~~~P~~~g~~ 267 (634)
T PRK08294 188 GEHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAVTDFPDIRLKCAIQSASEGSILLIPREGGYL 267 (634)
T ss_pred CCCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEccCCCCcceEEEEecCCCceEEEEECCCCeE
Confidence 4655679999999999999999999998776554333222211 23444422222 233567889999998884
Q ss_pred EEEEEEecC---CC---CCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCC----------CC
Q 010623 276 VRCLVDIPG---QK---VPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPY----------PT 339 (506)
Q Consensus 276 ~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 339 (506)
+++++.... .. ....+.+++.+.+++.+.+.... +. ....+..++...+.+++| +.
T Consensus 268 ~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~-~~-------~v~w~s~y~i~~r~a~~f~~~~~~~~~~r~ 339 (634)
T PRK08294 268 VRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLD-VK-------EVAWWSVYEVGQRLTDRFDDVPAEEAGTRL 339 (634)
T ss_pred EEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCc-ee-------EEeEEecccccceehhhccccccccccccc
Confidence 555554321 11 12345566666666644432111 10 112333455555556665 46
Q ss_pred CcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCC
Q 010623 340 PGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSAS 418 (506)
Q Consensus 340 ~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~ 418 (506)
|||+|+|||||.++|.+|||||+||+||.+|+|+|+.+.. +.+.+++|++|+.||+|+++.++..++.+.++|...
T Consensus 340 gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~---g~a~~~lL~tYe~ERrp~a~~li~~~~~~~~l~~~~ 415 (634)
T PRK08294 340 PRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLS---GRSPPELLHTYSAERQAIAQELIDFDREWSTMMAAP 415 (634)
T ss_pred CCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999998753 334578999999999999999999999999999765
No 20
>PRK06834 hypothetical protein; Provisional
Probab=100.00 E-value=8.9e-44 Score=367.22 Aligned_cols=390 Identities=19% Similarity=0.207 Sum_probs=268.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC-CcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP-DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG 138 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~-~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 138 (506)
++||+||||||+|+++|+.|+++|++|+|+||.+.+. ...++..++++++++|+++|+++.+.+.... ..... +.
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~-~~~~~-~~-- 78 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQV-AQVTG-FA-- 78 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCc-cccce-ee--
Confidence 5899999999999999999999999999999987644 3445667999999999999999888653211 11000 10
Q ss_pred ceeeeecCCcCCC-CCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623 139 NRTQISYPLEKFH-SDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI 216 (506)
Q Consensus 139 ~~~~~~~~~~~~~-~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV 216 (506)
...+...... ..+.++.+.+..+++.|.+.+++. +++++++ +++++++++++ +.++..+|+ +++||+||
T Consensus 79 ---~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~-gv~i~~~~~v~~v~~~~~~---v~v~~~~g~--~i~a~~vV 149 (488)
T PRK06834 79 ---ATRLDISDFPTRHNYGLALWQNHIERILAEWVGEL-GVPIYRGREVTGFAQDDTG---VDVELSDGR--TLRAQYLV 149 (488)
T ss_pred ---eEecccccCCCCCCccccccHHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEcCCe---EEEEECCCC--EEEeCEEE
Confidence 0111111111 123456788999999999999887 7888888 49999988774 445556665 57799999
Q ss_pred eecCCcccchhhccCCCCCCccceeeEEEeccCCCCCCeeEEEecCCCcEEEEecC-CCeEEEEEEecCCC-CCCCCchH
Q 010623 217 VCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPIS-SNEVRCLVDIPGQK-VPSISNGE 294 (506)
Q Consensus 217 ~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~-~~~~~~~~ 294 (506)
+|||.+|.+|+++++..++..+....++.. ...+.+........+.+...+.|.. ++..++.+..+... ....+.++
T Consensus 150 gADG~~S~vR~~lgi~~~g~~~~~~~~~~d-v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (488)
T PRK06834 150 GCDGGRSLVRKAAGIDFPGWDPTTSYLIAE-VEMTEEPEWGVHRDALGIHAFGRLEDEGPVRVMVTEKQVGATGEPTLDD 228 (488)
T ss_pred EecCCCCCcHhhcCCCCCCCCcceEEEEEE-EEecCCCCcceeeCCCceEEEeccCCCCeEEEEEecCCCCCCCCCCHHH
Confidence 999999999999998877666544444332 2222211112233445666677776 55555655544221 11334455
Q ss_pred HHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHh
Q 010623 295 MANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLL 374 (506)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L 374 (506)
..+.+.+.+...+.. .....+..++.....+++|+.|||+|+|||||.++|++|||||+||+||.||+|+|
T Consensus 229 ~~~~l~~~~g~~~~~---------~~~~~~~~~~~~~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkL 299 (488)
T PRK06834 229 LREALIAVYGTDYGI---------HSPTWISRFTDMARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKL 299 (488)
T ss_pred HHHHHHHhhCCCCcc---------ccceeEEeccccceecccccCCcEEEEeeccccCCccccccccccHHHHHHHHHHH
Confidence 555555544322211 01123456777777899999999999999999999999999999999999999999
Q ss_pred hhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCchhHHHhhcCC---
Q 010623 375 RHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGL--- 451 (506)
Q Consensus 375 ~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~--- 451 (506)
+.+.. +.+.+.+|++|++||+|++..++..+..+..++. . ++....+|+.+++++...+. .+.....++|+
T Consensus 300 a~vl~---g~~~~~lLd~Ye~eRrp~~~~~~~~t~~~~~~~~-~-~~~~~~lR~~~~~~~~~~~~-~~~~~~~~~g~~~~ 373 (488)
T PRK06834 300 AQVVK---GTSPESLLDTYHAERHPVAARVLRNTMAQVALLR-P-DDRTEALRDIVAELLGMDEP-RKRIAAMMSGLDIH 373 (488)
T ss_pred HHHHc---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C-ChHHHHHHHHHHHHhcCcHH-HHHHHHHHhcCCcc
Confidence 98753 2345789999999999999999998888877775 3 77788899988776554322 22222222222
Q ss_pred ------CCCchhhHHHHHH---------HHHH-HHHHhhccCC
Q 010623 452 ------NPRPLILVFHFFA---------VAIY-GVGRILLPFP 478 (506)
Q Consensus 452 ------~~~p~~~~~h~~~---------~~l~-~~~~~l~~~~ 478 (506)
.+.+|.++|+.++ .++. +.+|+|+...
T Consensus 374 y~~~~~~~~~G~~~p~~~~~~~~~~~~l~~~~~~~~~~ll~~~ 416 (488)
T PRK06834 374 YDLGEGHPLLGRRMPDLDLVTADGPRRVFTLLHNARPVLLNLG 416 (488)
T ss_pred cCCCCCCCCCcCCCCCcccccCCCceeHHHHhcCCeeEEEecC
Confidence 3456778887654 3444 3447777543
No 21
>PRK07045 putative monooxygenase; Reviewed
Probab=100.00 E-value=2.3e-43 Score=357.47 Aligned_cols=359 Identities=24% Similarity=0.312 Sum_probs=248.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG 138 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 138 (506)
.++||+||||||+||++|+.|+++|++|+|+||.+.......+..++++++++|+++|+++.+.+........+.++.++
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g 83 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDK 83 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCC
Confidence 35899999999999999999999999999999998776555566799999999999999998876543333444455444
Q ss_pred ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623 139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV 217 (506)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~ 217 (506)
+.. ..++............++|..+.+.|.+.+.+.+++++++++ +++++++++++. +.++.++|+ ++++|+||+
T Consensus 84 ~~~-~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-~~v~~~~g~--~~~~~~vIg 159 (388)
T PRK07045 84 ELI-ASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTV-TSVTLSDGE--RVAPTVLVG 159 (388)
T ss_pred cEE-EEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcE-EEEEeCCCC--EEECCEEEE
Confidence 432 222221111111123578899999999999877789999885 999988765432 345566776 467999999
Q ss_pred ecCCcccchhhc-cCCCCCCc---cceeeEEEeccCCCCCCeeEEEecC-CCcEEEEecCCCeEEEEEEecCCCCCC---
Q 010623 218 CDGCFSNLRRSL-CNPKVDVP---SCFVGLVLENCNLPFENHGHVVLAD-PSPILFYPISSNEVRCLVDIPGQKVPS--- 289 (506)
Q Consensus 218 AdG~~S~vR~~l-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~--- 289 (506)
|||.+|.+|+++ +.+..... ....+.+...... ++....++.+ .+..+++|.+++..++++.++.+...+
T Consensus 160 ADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 237 (388)
T PRK07045 160 ADGARSMIRDDVLRMPAERVPYATPMAFGTIALTDSV--RECNRLYVDSNQGLAYFYPIGDQATRLVVSFPADEMQGYLA 237 (388)
T ss_pred CCCCChHHHHHhhCCCcccCCCCcceeEEEEeccCCc--cccceEEEcCCCceEEEEEcCCCcEEEEEEeccccchhccC
Confidence 999999999974 44322211 1222332221111 2223344544 456778999888778888776543222
Q ss_pred -CCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHH
Q 010623 290 -ISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 368 (506)
Q Consensus 290 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~ 368 (506)
.+.+++.+.+.+.+.+. +.+.+........+..+++....+++|..|||+|+|||||.++|++|||+|+||+||.
T Consensus 238 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~ 313 (388)
T PRK07045 238 DTTRTKLLARLNEFVGDE----SADAMAAIGAGTAFPLIPLGRMNLDRYHKRNVVLLGDAAHSIHPITGQGMNLAIEDAG 313 (388)
T ss_pred CCCHHHHHHHHhhhcCcc----chHHHhccCcccccceeecCccccccccCCCEEEEEccccccCCCccccHHHHHHHHH
Confidence 22334444444433222 2211111111122333455666678999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 010623 369 ILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQAC 430 (506)
Q Consensus 369 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~ 430 (506)
+|+++|..+.. +....+++|+.|+++|++++..++..++.+.+.++.. .+.....|..+
T Consensus 314 ~La~~L~~~~~--~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 372 (388)
T PRK07045 314 ELGACLDLHLS--GQIALADALERFERIRRPVNEAVISYGHALATTYHDR-AALVANFRSQL 372 (388)
T ss_pred HHHHHHHhhcC--CchhHHHHHHHHHHHhhhHHHHHHhhhHHHhhhcccc-hhHHHHHHhhh
Confidence 99999987532 2245788999999999999999999999999998875 66666666655
No 22
>PRK09126 hypothetical protein; Provisional
Probab=100.00 E-value=6.2e-44 Score=362.47 Aligned_cols=366 Identities=18% Similarity=0.195 Sum_probs=257.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC-----CcccccccccchHHHHHHhCchhHHhhcccceecceE
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP-----DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYA 133 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~-----~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 133 (506)
+++||+||||||+|+++|+.|+++|++|+|+||.+.+. ..+.+..+++++++.|+++|+++.+......+..+..
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~ 81 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAK 81 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEE
Confidence 36899999999999999999999999999999987532 1233456889999999999999887654433444555
Q ss_pred EEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEc
Q 010623 134 LFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYA 212 (506)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a 212 (506)
+++........++.........++.+++..+.+.|.+.+.+..++++++++ |++++++++. +.+..++|+ +++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~---~~v~~~~g~--~~~a 156 (392)
T PRK09126 82 VLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG---AQVTLANGR--RLTA 156 (392)
T ss_pred EEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe---EEEEEcCCC--EEEe
Confidence 554332222333322222234566788999999999988776689999885 9999877664 345556775 4679
Q ss_pred CeEEeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCCCC---
Q 010623 213 PLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVP--- 288 (506)
Q Consensus 213 ~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--- 288 (506)
|+||+|||.+|.+|+.++++..........+... ....+.......+++.++.++++|..++..++++..+.+..+
T Consensus 157 ~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~ 236 (392)
T PRK09126 157 RLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHELPHHHTAWEWFGYGQTLALLPLNGHLSSLVLTLPPDQIEALL 236 (392)
T ss_pred CEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEeccCCCCCEEEEEecCCCCeEEeECCCCCEEEEEECCHHHHHHHH
Confidence 9999999999999999987543222222112111 122233334456677777899999998887887766543211
Q ss_pred CCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHH
Q 010623 289 SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 368 (506)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~ 368 (506)
..+.+++.+.+.+.+.+.+. ..........++.....+++|..+||+|+|||||.++|++|||+|+||+||.
T Consensus 237 ~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~ai~da~ 308 (392)
T PRK09126 237 ALDPEAFAAEVTARFKGRLG--------AMRLVSSRHAYPLVAVYAHRFVAKRFALIGDAAVGMHPVTAHGFNLGLKGQD 308 (392)
T ss_pred cCCHHHHHHHHHHHHhhhcc--------CeEEcCCCcEeechHHHHHHHhhcceEEEehhhhcCCCcccchhhhhHHHHH
Confidence 12233333333222111110 0001123445666656678899999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCC
Q 010623 369 ILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGG 438 (506)
Q Consensus 369 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ 438 (506)
.|+++|..+...+.+...+++|+.|+++|++++..++..++.+.+++..+ ++....+|+.++..+..-+
T Consensus 309 ~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~ 377 (392)
T PRK09126 309 ILARLILAAARRGQDIGAASLLERYERKHRLATRPLYHATNAIAALYTDD-RPPARLLRRAVLRAANRFP 377 (392)
T ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHHhhCh
Confidence 99999987642112223468999999999999999999999999999876 7788899999988765443
No 23
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=1.9e-43 Score=358.33 Aligned_cols=361 Identities=18% Similarity=0.210 Sum_probs=261.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 139 (506)
.+||+||||||+|+++|+.|+++|++|+|+||.+.... .++..+.+++.++|+++|+++.+... ..+.....+++.+.
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~-~r~~~l~~~s~~~l~~lgl~~~~~~~-~~~~~~~~~~~~~g 84 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYAD-LRTTALLGPSIRFLERLGLWARLAPH-AAPLQSMRIVDATG 84 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCC-cchhhCcHHHHHHHHHhCchhhhHhh-cceeeEEEEEeCCC
Confidence 58999999999999999999999999999999875432 45566888899999999999888653 33455566665432
Q ss_pred eee----eecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeE
Q 010623 140 RTQ----ISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLT 215 (506)
Q Consensus 140 ~~~----~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~v 215 (506)
... ..+........+.++.+++..+.+.|.+.+.+.+++.....+|+++++++++ ++++.++|+ +++||+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~---~~v~~~~g~--~~~a~~v 159 (388)
T PRK07494 85 RLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPREDE---VTVTLADGT--TLSARLV 159 (388)
T ss_pred CCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCe---EEEEECCCC--EEEEeEE
Confidence 111 1222222223445678999999999999999887777443469999887774 445566775 4679999
Q ss_pred EeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCC---CCCCC
Q 010623 216 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK---VPSIS 291 (506)
Q Consensus 216 V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~~~ 291 (506)
|+|||.+|.+|+.++++.....+...++... ..+.+.......++.+.+++.++|++++..+++|..+.+. ....+
T Consensus 160 I~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~~Pl~~~~~~~v~~~~~~~~~~~~~~~ 239 (388)
T PRK07494 160 VGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHSRPHQNVSTEFHTEGGPFTQVPLPGRRSSLVWVVRPAEAERLLALS 239 (388)
T ss_pred EEecCCCchhHHhcCCCceecCCCCEEEEEEEeccCCCCCEEEEEeCCCCcEEEEECCCCcEEEEEECCHHHHHHHHcCC
Confidence 9999999999999988754444333444332 2334444444556677888999999887777777654321 11223
Q ss_pred chHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHH
Q 010623 292 NGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILR 371 (506)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La 371 (506)
.+++.+.+.+.+.+.+ ...........||+....+.+|..+||+|+|||||.++|++|||+|+||+||.+|+
T Consensus 240 ~~~~~~~~~~~~~~~l--------~~~~~~~~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La 311 (388)
T PRK07494 240 DAALSAAIEERMQSML--------GKLTLEPGRQAWPLSGQVAHRFAAGRTALVGEAAHVFPPIGAQGLNLGLRDVATLV 311 (388)
T ss_pred HHHHHHHHHHHHhhhc--------CCeEEccCCcEeechHHHHHhhccCceEEEEhhhhcCCchhhcccchhHHHHHHHH
Confidence 3344444433221111 00111123456788777788999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCC
Q 010623 372 NLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGI 439 (506)
Q Consensus 372 ~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~ 439 (506)
++|.... .+....++|+.|+++|+++...+...++.+.++|... .+....+|+..+..+..-+.
T Consensus 312 ~~L~~~~---~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~~~l~~~~~~~~ 375 (388)
T PRK07494 312 EIVEDRP---EDPGSAAVLAAYDRARRPDILSRTASVDLLNRSLLSD-FLPVQDLRAAGLHLLYSFGP 375 (388)
T ss_pred HHHHhcC---CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhhCHH
Confidence 9998742 2234568999999999999999988999999999887 88889999998877665443
No 24
>PRK07190 hypothetical protein; Provisional
Probab=100.00 E-value=4.7e-43 Score=361.39 Aligned_cols=335 Identities=16% Similarity=0.145 Sum_probs=242.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 139 (506)
.+||+||||||+||++|+.|+++|++|+|+||.+.+...+++..++++++++|+.+|+++.+.... .+.....+|.++.
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~-~~~~~~~~~~~g~ 83 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLG-KPCNTSSVWANGK 83 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhC-ccceeEEEecCCc
Confidence 489999999999999999999999999999999877667777889999999999999998876533 2333334455443
Q ss_pred eeeeecC-CcCC--CCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeE
Q 010623 140 RTQISYP-LEKF--HSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLT 215 (506)
Q Consensus 140 ~~~~~~~-~~~~--~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~v 215 (506)
....... .... ...+....+++..+++.|.+.+.+. +++++++ +|+++.++++++ ++...+|+ +++|++|
T Consensus 84 ~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~-Gv~v~~~~~v~~l~~~~~~v---~v~~~~g~--~v~a~~v 157 (487)
T PRK07190 84 FISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEA-GAAVKRNTSVVNIELNQAGC---LTTLSNGE--RIQSRYV 157 (487)
T ss_pred eEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHC-CCEEEeCCEEEEEEEcCCee---EEEECCCc--EEEeCEE
Confidence 3211110 0111 1112234678889999999999888 7888888 499999887754 34445665 5789999
Q ss_pred EeecCCcccchhhccCCCCCCccceeeEEE---eccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCCCCCCCc
Q 010623 216 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVL---ENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISN 292 (506)
Q Consensus 216 V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 292 (506)
|+|||.+|.+|++++++..+........+. ...+.+.......+..+.+.+.++|..++..++++..+ .+..+.
T Consensus 158 VgADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~r~~~~~~---~~~~t~ 234 (487)
T PRK07190 158 IGADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPKVPEIIVFQAETSDVAWIPREGEIDRFYVRMD---TKDFTL 234 (487)
T ss_pred EECCCCCHHHHHHcCCCccccccceeEEEEEEEEccCCCCCcceEEEEcCCCCEEEEECCCCEEEEEEEcC---CCCCCH
Confidence 999999999999999987654433222222 12333331222334456778888999877655544322 234556
Q ss_pred hHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCC-CCcEEEEccCCCCCCCCcchhhHHHHHHHHHHH
Q 010623 293 GEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYP-TPGALLMGDAFNMRHPLTGGGMTVALSDIVILR 371 (506)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La 371 (506)
++..+.+.+.+.+. .+. ..+......|++..+.+++|+ .|||+|+|||||.++|.+|||||+||+||.||+
T Consensus 235 ~~~~~~l~~~~~~~---~~~-----~~~~~w~s~~~~~~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~ 306 (487)
T PRK07190 235 EQAIAKINHAMQPH---RLG-----FKEIVWFSQFSVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLADAFNLI 306 (487)
T ss_pred HHHHHHHHHhcCCC---CCc-----eEEEEEEEEeeeCcEehhhcCcCCcEEEEecccccCCCccccchhhhHHHHHHHH
Confidence 66666666544322 110 011234567888888999997 799999999999999999999999999999999
Q ss_pred HHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 010623 372 NLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVF 415 (506)
Q Consensus 372 ~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~ 415 (506)
|+|+.+.+ +.+.+.+|++|++||+|++..+...++.+.++.
T Consensus 307 wkLa~v~~---g~a~~~lLdtY~~eR~p~a~~vl~~t~~~~~~~ 347 (487)
T PRK07190 307 WKLNMVIH---HGASPELLQSYEAERKPVAQGVIETSGELVRST 347 (487)
T ss_pred HHHHHHHc---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99997653 233478999999999999999999888777665
No 25
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=100.00 E-value=7.4e-43 Score=354.00 Aligned_cols=360 Identities=22% Similarity=0.298 Sum_probs=260.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCc-----ccccccccchHHHHHHhCchhHHhhcccceecceEEEE
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDR-----IVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFK 136 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~-----~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 136 (506)
||+||||||+|+++|+.|+++|++|+|+||++.+... .++..+++++.+.|+++|+++.+.+....+..+..++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 7999999999999999999999999999999865433 35678999999999999999888763334555566666
Q ss_pred CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeE
Q 010623 137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLT 215 (506)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~v 215 (506)
.+......++.........++.++|..+.+.|.+.+.+.++++++++ +|+++..++++ +.+..++|++ +++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~---~~v~~~~g~~--~~~~~v 155 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDH---VELTLDDGQQ--LRARLL 155 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCe---eEEEECCCCE--EEeeEE
Confidence 54332233332222223345789999999999999998866888888 49999887764 4455677864 679999
Q ss_pred EeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCC---CCCCC
Q 010623 216 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK---VPSIS 291 (506)
Q Consensus 216 V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~~~ 291 (506)
|+|||.+|.+|++++++.....+...++... ....+.+.....++.+++.++++|++++..++.+..+.+. ....+
T Consensus 156 i~adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 235 (385)
T TIGR01988 156 VGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHERPHQGTAWERFTPTGPLALLPLPDNRSSLVWTLPPEEAERLLALS 235 (385)
T ss_pred EEeCCCCCHHHHHcCCCccccccCCeEEEEEEEecCCCCCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHHcCC
Confidence 9999999999999987544332222222211 2222223333445667788999999999878877765321 11234
Q ss_pred chHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHH
Q 010623 292 NGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILR 371 (506)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La 371 (506)
.+++.+.+.+.+.+.+. .+ ........+++....+.+|..+||+|+|||||.++|++|||+|+||+||.+|+
T Consensus 236 ~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La 307 (385)
T TIGR01988 236 DEEFLAELQRAFGSRLG-AI-------TLVGERHAFPLSLTHAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRDVAALA 307 (385)
T ss_pred HHHHHHHHHHHHhhhcC-ce-------EeccCcceeechhhhhhheecCceEEEecccccCCccccchhhhhHHHHHHHH
Confidence 44555555443322211 00 11123455666666678899999999999999999999999999999999999
Q ss_pred HHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHh
Q 010623 372 NLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLS 435 (506)
Q Consensus 372 ~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~ 435 (506)
+.|......+.....+++|+.|+++|++++..++..++.+.+++..+ ++....+|+..++.+.
T Consensus 308 ~~L~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~ 370 (385)
T TIGR01988 308 EVLEDARRRGEDIGSPRVLQRYERRRRFDNAAMLGATDGLNRLFSND-FPPLRLLRNLGLRLLN 370 (385)
T ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHh
Confidence 99986532111112468999999999999999999999999999876 7778888888877654
No 26
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=100.00 E-value=1.4e-42 Score=352.39 Aligned_cols=364 Identities=20% Similarity=0.232 Sum_probs=253.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC------cccccccccchHHHHHHhCchhHHhhcccceecceE
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD------RIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYA 133 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~------~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 133 (506)
++||+||||||+|+++|+.|+++|++|+|+|+.+.... ..+...+++++.++|+++|+++.+......+.....
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE 84 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence 58999999999999999999999999999999853221 123456889999999999999888654333333333
Q ss_pred EEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEc
Q 010623 134 LFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYA 212 (506)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a 212 (506)
.+..... ...+..........++.++|..+.+.|.+.+.+.++++++.+ +++++.+++++ +.+..++|+ +++|
T Consensus 85 ~~~~~~~-~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~---~~v~~~~g~--~~~a 158 (391)
T PRK08020 85 TWEWETA-HVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG---WELTLADGE--EIQA 158 (391)
T ss_pred EEeCCCC-eEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe---EEEEECCCC--EEEe
Confidence 3322111 122222222223345788999999999999988778888877 59998877664 445566775 4679
Q ss_pred CeEEeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCC---CC
Q 010623 213 PLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK---VP 288 (506)
Q Consensus 213 ~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~ 288 (506)
|+||+|||.+|.+|+.++++.....+...++.+. ..+.+..+..+..+..+++..++|+.++...+++..+... ..
T Consensus 159 ~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~v~~~~~~~~~~~~ 238 (391)
T PRK08020 159 KLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENPPGDSTWQQFTPSGPRAFLPLFDNWASLVWYDSPARIRQLQ 238 (391)
T ss_pred CEEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecCCCCCEEEEEEcCCCCEEEeECCCCcEEEEEECCHHHHHHHH
Confidence 9999999999999999987654433333333322 2223333444555666777888999877666655433211 01
Q ss_pred CCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHH
Q 010623 289 SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 368 (506)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~ 368 (506)
..+.+++.+.+.+.+.+.+. . ........||+....+.+|..+|++|+|||||.++|++|||+|+||+||.
T Consensus 239 ~~~~~~~~~~l~~~~~~~~~--------~-~~~~~~~~~pl~~~~~~~~~~~rv~LvGDAAH~~~P~~GqG~n~al~Da~ 309 (391)
T PRK08020 239 AMSMAQLQQEIAAHFPARLG--------A-VTPVAAGAFPLTRRHALQYVQPGLALVGDAAHTINPLAGQGVNLGYRDVD 309 (391)
T ss_pred CCCHHHHHHHHHHHhhhhcc--------c-eEeccccEeecceeehhhhccCcEEEEechhhccCCcccchhHHHHHHHH
Confidence 11223333333322211111 0 11113345777666788999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCC
Q 010623 369 ILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGI 439 (506)
Q Consensus 369 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~ 439 (506)
+|+++|.+....+.+...+.+|+.|+++|+++...++..++.+.++|+.+ .+....+|+..+..+..-+.
T Consensus 310 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~-~~~~~~~R~~~l~~~~~~~~ 379 (391)
T PRK08020 310 ALLDVLVNARSYGEAWASEAVLKRYQRRRMADNLLMQSGMDLFYAGFSNN-LPPLRFARNLGLMAAQRAGV 379 (391)
T ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhcCHH
Confidence 99999986532222233568999999999999999888999999999987 78889999999887765443
No 27
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=6.1e-43 Score=356.57 Aligned_cols=375 Identities=18% Similarity=0.227 Sum_probs=260.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCC--CcccccccccchHHHHHHhCchhHHhhcccceecceEEEE
Q 010623 61 ADVIVVGAGVAGAALANTLAKDG--RRVHVIERDLSEP--DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFK 136 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G--~~v~vvE~~~~~~--~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 136 (506)
+||+||||||+||++|+.|+++| ++|+|+||.+... ...++..++++++++|+++|+++.+.... .+...+.+++
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~-~~~~~~~~~~ 80 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEA-QPITDMVITD 80 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhc-CcccEEEEEe
Confidence 79999999999999999999996 9999999987543 24578889999999999999998887643 3344455544
Q ss_pred CCce-----eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEE
Q 010623 137 DGNR-----TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTA 210 (506)
Q Consensus 137 ~~~~-----~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i 210 (506)
.... ....+........+.++.++|..+.+.|.+.+.+. +++++++ +|++++++++. +.+..++|+ ++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~---v~v~~~~g~--~~ 154 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEAL-GIDLREATSVTDFETRDEG---VTVTLSDGS--VL 154 (403)
T ss_pred CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEcCCE---EEEEECCCC--EE
Confidence 2111 11121111111233456789999999999999887 7888877 59999887774 445566776 46
Q ss_pred EcCeEEeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCCCC-
Q 010623 211 YAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVP- 288 (506)
Q Consensus 211 ~a~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~- 288 (506)
+||+||+|||.+|.+|+.+++......+...+++.. ....+..+....++.++++++++|+++++.++.+..+.+..+
T Consensus 155 ~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~ 234 (403)
T PRK07333 155 EARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHERPHGGRAEEHFLPAGPFAILPLKGNRSSLVWTERTADAER 234 (403)
T ss_pred EeCEEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCCCCCCEEEEEeCCCCceEEeECCCCCeEEEEECCHHHHHH
Confidence 799999999999999999988654444334444332 222233344555667788899999999887776654321110
Q ss_pred --CCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHH
Q 010623 289 --SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSD 366 (506)
Q Consensus 289 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~D 366 (506)
....+...+.+.+.+...+.+ + ........++.....+.+|..|||+|+|||||.++|++|||+|+||+|
T Consensus 235 ~~~~~~~~~~~~l~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~D 306 (403)
T PRK07333 235 LVALDDLVFEAELEQRFGHRLGE-L-------KVLGKRRAFPLGLTLARSFVAPRFALVGDAAHGIHPIAGQGLNLGLKD 306 (403)
T ss_pred HHCCCHHHHHHHHHHHhhhhcCc-e-------EeccCccEeechhhhhhhccCCCEEEEechhhcCCCccccchhhhHHH
Confidence 011112222222222111110 0 001122346666567789999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCchhHHH
Q 010623 367 IVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVS 446 (506)
Q Consensus 367 a~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~ 446 (506)
|.+|+++|......+.+...+++|++|+++|+++...++..++.+.+++..+ ++....+|+..+..+..-+...+..+.
T Consensus 307 a~~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~ 385 (403)
T PRK07333 307 VAALAEVVVEAARLGLDIGSLDVLERYQRWRRFDTVRMGVTTDVLNRLFSND-STLLRSVRDIGLGLVDRLPKLKSFFIR 385 (403)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999987642222223578999999999999999999999999999876 778889999888877654444443344
Q ss_pred hhcCC
Q 010623 447 LLSGL 451 (506)
Q Consensus 447 ~~~~~ 451 (506)
.+.|+
T Consensus 386 ~~~g~ 390 (403)
T PRK07333 386 QAAGL 390 (403)
T ss_pred HHhCc
Confidence 44444
No 28
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=100.00 E-value=1.1e-42 Score=352.04 Aligned_cols=358 Identities=20% Similarity=0.256 Sum_probs=253.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CcEEEEecCCCCCCc----ccccccccchHHHHHHhCchhHHhhcccceecceEEEE
Q 010623 62 DVIVVGAGVAGAALANTLAKDG-RRVHVIERDLSEPDR----IVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFK 136 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G-~~v~vvE~~~~~~~~----~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 136 (506)
||+||||||+|+++|+.|+++| ++|+|+||.+.+... .++..++++++++|+++|+++.+.... .......+..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~-~~~~~~~~~~ 79 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFA-TPILDIHVSD 79 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhc-CccceEEEEc
Confidence 7999999999999999999999 999999998765543 356789999999999999998886543 2333444443
Q ss_pred CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeE
Q 010623 137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLT 215 (506)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~v 215 (506)
.+......+....+.....++.++|..|.+.|.+.+.+.++++++++ +|+++.+++++ +++..++|+ +++||+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~---~~v~~~~g~--~~~ad~v 154 (382)
T TIGR01984 80 QGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY---VRVTLDNGQ--QLRAKLL 154 (382)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe---EEEEECCCC--EEEeeEE
Confidence 32211222222222223345778999999999999988658888876 59999877774 445566776 4679999
Q ss_pred EeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCC-eEEEEEEecCCC---CCCC
Q 010623 216 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSN-EVRCLVDIPGQK---VPSI 290 (506)
Q Consensus 216 V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~---~~~~ 290 (506)
|+|||.+|.+|+.++++.....+....+... ..+.+.......++..++.+.++|.+++ ..++++..+.+. ....
T Consensus 155 V~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 234 (382)
T TIGR01984 155 IAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQPHQGCAFERFTPHGPLALLPLKDNYRSSLVWCLPSKQADTIANL 234 (382)
T ss_pred EEecCCChHHHHHcCCCCcccccCCEEEEEEEEecCCCCCEEEEeeCCCCCeEECcCCCCCCEEEEEECCHHHHHHHHcC
Confidence 9999999999999987654333322222221 2222333333445666778889999888 666666554321 1122
Q ss_pred CchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHH
Q 010623 291 SNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVIL 370 (506)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~L 370 (506)
+.++..+.+.+.+.+ .+. ..........++......++|..+||+|+|||||.++|++|||+|+||+||.+|
T Consensus 235 ~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~L 306 (382)
T TIGR01984 235 PDAEFLAELQQAFGW----RLG----KITQVGERKTYPLKLRIAETHVHPRVVLIGNAAQTLHPIAGQGFNLGLRDVETL 306 (382)
T ss_pred CHHHHHHHHHHHHhh----hcc----CeEEcCCccEeecchhhhhheecCCEEEEeecccccCCccccchhhhHHHHHHH
Confidence 333333333332211 111 111123445667666678889999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcC
Q 010623 371 RNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLG 437 (506)
Q Consensus 371 a~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g 437 (506)
+++|.... .+...+++|+.|+++|++++..++..+..+.+++..+ ++....+|+..++.+..-
T Consensus 307 a~~L~~~~---~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~ 369 (382)
T TIGR01984 307 AEVLIDAR---IDLGTYALLQEYLRRRQFDQFITIGLTDGLNRLFSNH-IPLLRALRNLGLLALENF 369 (382)
T ss_pred HHHHHHhc---cCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhcC
Confidence 99998653 1123468999999999999999999999999999876 777788999888776543
No 29
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=100.00 E-value=1.5e-41 Score=344.23 Aligned_cols=358 Identities=21% Similarity=0.242 Sum_probs=240.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC--CCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE--PDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD 137 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~--~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 137 (506)
++||+||||||+||++|+.|+++|++|+|+||.+.. ....++..++++++++|+++|+++.+.... ....++.++.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~-~~~~~~~~~~~ 80 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREG-LVHDGIELRFD 80 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcC-CccCcEEEEEC
Confidence 589999999999999999999999999999999753 223455679999999999999999887643 34566666666
Q ss_pred CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEe-eCCeEEEEEEEeCCccEEEEEcCeE
Q 010623 138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLE-EKGTIKGVQYKTKAGEELTAYAPLT 215 (506)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~-~~~~v~~v~v~~~~G~~~~i~a~~v 215 (506)
+......++ ..........++|..+.+.|.+.+.+. ++++++++ ++++++ +++. ..|++. .+|++.+++||+|
T Consensus 81 g~~~~~~~~--~~~~~~~~~~~~~~~l~~~Ll~~a~~~-gv~v~~~~~v~~i~~~~~~~-~~V~~~-~~G~~~~i~ad~v 155 (392)
T PRK08243 81 GRRHRIDLT--ELTGGRAVTVYGQTEVTRDLMAARLAA-GGPIRFEASDVALHDFDSDR-PYVTYE-KDGEEHRLDCDFI 155 (392)
T ss_pred CEEEEeccc--cccCCceEEEeCcHHHHHHHHHHHHhC-CCeEEEeeeEEEEEecCCCc-eEEEEE-cCCeEEEEEeCEE
Confidence 654333332 211122233567888888898888776 67787774 888876 4443 235542 4677667899999
Q ss_pred EeecCCcccchhhccCCCCC---C--ccceeeEEEeccCCCCCCeeEEEecC-CCcEEEEecCCCeEEEEEEecCC-CCC
Q 010623 216 IVCDGCFSNLRRSLCNPKVD---V--PSCFVGLVLENCNLPFENHGHVVLAD-PSPILFYPISSNEVRCLVDIPGQ-KVP 288 (506)
Q Consensus 216 V~AdG~~S~vR~~l~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~-~~~ 288 (506)
|+|||.+|.+|++++..... . +..+.++. .+.+.......+... .+..++++.+++..++++.++.. ..+
T Consensus 156 VgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (392)
T PRK08243 156 AGCDGFHGVSRASIPAGALRTFERVYPFGWLGIL---AEAPPVSDELIYANHERGFALCSMRSPTRSRYYLQCPLDDKVE 232 (392)
T ss_pred EECCCCCCchhhhcCcchhhceecccCceEEEEe---CCCCCCCCceEEeeCCCceEEEecCCCCcEEEEEEecCCCCcc
Confidence 99999999999999764321 1 11222222 122221112223333 34444455555555666655432 233
Q ss_pred CCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHH
Q 010623 289 SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 368 (506)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~ 368 (506)
.++.++..+.+.+.+.+.....+. . .+......++.....+.+|..|||+|+|||||.++|++|||+|+||+||.
T Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai~Da~ 307 (392)
T PRK08243 233 DWSDERFWDELRRRLPPEDAERLV----T-GPSIEKSIAPLRSFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVR 307 (392)
T ss_pred cCChhHHHHHHHHhcCcccccccc----c-CccccccceeeeeceeccceeCCEEEEecccccCCCCcCcchhHHHHHHH
Confidence 344555555555543322111110 0 00011123455556678899999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCC--chhHHHHHHHHHHHHh
Q 010623 369 ILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASP--DEARKEMRQACFDYLS 435 (506)
Q Consensus 369 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~--~~~~~~~r~~~~~~~~ 435 (506)
+|+|+|....+. ..+++|++|+++|++++..++..+..+.++++..+ ++....+|+..++.+.
T Consensus 308 ~La~~L~~~~~~----~~~~~L~~Ye~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (392)
T PRK08243 308 YLARALVEFYRE----GDTALLDAYSATALRRVWKAERFSWWMTSMLHRFPDDDPFDQRIQLAELDYLT 372 (392)
T ss_pred HHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHh
Confidence 999999876421 13689999999999999999999998888877642 3455667777766544
No 30
>PRK06996 hypothetical protein; Provisional
Probab=100.00 E-value=9e-42 Score=346.33 Aligned_cols=356 Identities=17% Similarity=0.175 Sum_probs=252.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC----CcEEEEecCCCCC--CcccccccccchHHHHHHhCchhHHhhcccceecce
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDG----RRVHVIERDLSEP--DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGY 132 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G----~~v~vvE~~~~~~--~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 132 (506)
..+||+||||||+|+++|+.|+++| ++|+|+|+.+... ..+++..++++++++|+++|+++... .+....
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~----~~~~~~ 85 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADA----TPIEHI 85 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcC----CcccEE
Confidence 4589999999999999999999997 4799999985432 23467889999999999999997521 233344
Q ss_pred EEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCC--ccEEE
Q 010623 133 ALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKA--GEELT 209 (506)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~--G~~~~ 209 (506)
.++..+......+...+......++.++|..+++.|.+.+.+. ++++..+ +++++++++++ |+++..+ |+ .+
T Consensus 86 ~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~-g~~~~~~~~v~~~~~~~~~---v~v~~~~~~g~-~~ 160 (398)
T PRK06996 86 HVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGT-PVRWLTSTTAHAPAQDADG---VTLALGTPQGA-RT 160 (398)
T ss_pred EEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhC-CCEEEcCCeeeeeeecCCe---EEEEECCCCcc-eE
Confidence 4444333222233333333344578899999999999999998 5778777 48888877764 4444443 32 36
Q ss_pred EEcCeEEeecCC-cccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCe---EEEEEEecC
Q 010623 210 AYAPLTIVCDGC-FSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNE---VRCLVDIPG 284 (506)
Q Consensus 210 i~a~~vV~AdG~-~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~~~ 284 (506)
++||+||+|||. +|.+|+.+++......+...++... ..+.+.+...+..+...+++.++|+.++. .++++..++
T Consensus 161 i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~~~lp~~~~~~~~~~~v~~~~~ 240 (398)
T PRK06996 161 LRARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAPRPGWAWERFTHEGPLALLPLGGPRQADYALVWCCAP 240 (398)
T ss_pred EeeeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccCCCCCEEEEEecCCCCeEEeECCCCCCCcEEEEEECCH
Confidence 889999999997 5788998887655544444444332 22333444445556777889999998654 455555543
Q ss_pred CCC---CCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhH
Q 010623 285 QKV---PSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMT 361 (506)
Q Consensus 285 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n 361 (506)
+.. ..++.++..+.+.+.+.+.+.. +. .......++.....+.+|..|||+|+|||||.++|++|||+|
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~-------~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n 312 (398)
T PRK06996 241 DEAARRAALPDDAFLAELGAAFGTRMGR-FT-------RIAGRHAFPLGLNAARTLVNGRIAAVGNAAQTLHPVAGQGLN 312 (398)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccccCc-eE-------EecceEEEeeecccccceecCCEEEEEhhhccCCcccchhHH
Confidence 211 1233344444444433322211 10 112233567777778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCC
Q 010623 362 VALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGG 438 (506)
Q Consensus 362 ~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ 438 (506)
+||+||.+|+++|... + ..+++|++|+++|+++...++..++.+.++|... ++....+|+..+..+..-+
T Consensus 313 ~ai~Da~~La~~L~~~---~---~~~~~L~~Y~~~R~~~~~~~~~~s~~l~~~~~~~-~~~~~~~R~~~l~~~~~~~ 382 (398)
T PRK06996 313 LGLRDAHTLADALSDH---G---ATPLALATFAARRALDRRVTIGATDLLPRLFTVD-SRPLAHLRGAALTALEFVP 382 (398)
T ss_pred HHHHHHHHHHHHHHhc---C---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHhHHHHHHhhCH
Confidence 9999999999999752 1 1346799999999999999999999999999886 7788899998877665443
No 31
>PRK06753 hypothetical protein; Provisional
Probab=100.00 E-value=4e-41 Score=339.59 Aligned_cols=352 Identities=17% Similarity=0.201 Sum_probs=246.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
.+|+||||||+||++|+.|+++|++|+|+||++.......+..+++++++.|+++|+.+.+.... .....+.+++....
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~-~~~~~~~~~~~~g~ 79 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAG-QILSTMNLLDDKGT 79 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcC-CcccceeEEcCCCC
Confidence 38999999999999999999999999999999887777788889999999999999998876532 34455566554222
Q ss_pred eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (506)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad 219 (506)
.....+. .....++.++|..|.+.|.+.+.. .+++++ +|+++++++++ +++++++|++ +++|+||+||
T Consensus 80 ~~~~~~~---~~~~~~~~i~R~~l~~~L~~~~~~---~~i~~~~~v~~i~~~~~~---v~v~~~~g~~--~~~~~vigad 148 (373)
T PRK06753 80 LLNKVKL---KSNTLNVTLHRQTLIDIIKSYVKE---DAIFTGKEVTKIENETDK---VTIHFADGES--EAFDLCIGAD 148 (373)
T ss_pred EEeeccc---ccCCccccccHHHHHHHHHHhCCC---ceEEECCEEEEEEecCCc---EEEEECCCCE--EecCEEEECC
Confidence 2111221 122345678999999999988753 467777 59999877664 5566777864 5799999999
Q ss_pred CCcccchhhccCCCCCCccceeeEE--EeccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCCCCCCCchHHHH
Q 010623 220 GCFSNLRRSLCNPKVDVPSCFVGLV--LENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMAN 297 (506)
Q Consensus 220 G~~S~vR~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (506)
|.+|.+|+.++.........+..+. ......+.++....+++.+++++++|..+++.+|.+.+..+...........+
T Consensus 149 G~~S~vR~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (373)
T PRK06753 149 GIHSKVRQSVNADSKVRYQGYTCFRGLIDDIDLKLPDCAKEYWGTKGRFGIVPLLNNQAYWFITINAKERDPKYSSFGKP 228 (373)
T ss_pred CcchHHHHHhCCCCCceEcceEEEEEEeccccccCccceEEEEcCCCEEEEEEcCCCeEEEEEEeccccCCcccccccHH
Confidence 9999999999764322111122111 11122223333445667777889999999887787766432111111111122
Q ss_pred HHHHhcCCCCChhhhHHHHhhhcCCCeEEecCC-ccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHhhh
Q 010623 298 YLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNR-SMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRH 376 (506)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~ 376 (506)
.+.+.+. .+++.+.+.+.. .....+..++.. ..+..+|..+||+|+|||||.|+|+.|||+|+||+||..|++.|..
T Consensus 229 ~l~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~ 306 (373)
T PRK06753 229 HLQAYFN-HYPNEVREILDK-QSETGILHHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLNA 306 (373)
T ss_pred HHHHHHh-cCChHHHHHHHh-CCcccceeeccccccccccccCCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhhh
Confidence 2333332 234444433322 222222333322 2345788999999999999999999999999999999999999963
Q ss_pred cCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHH
Q 010623 377 LSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYL 434 (506)
Q Consensus 377 ~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~ 434 (506)
.+.+++|+.|+++|++++..++..++.+.++++.+ .+....+|+..++..
T Consensus 307 -------~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~-~~~~~~~r~~~l~~~ 356 (373)
T PRK06753 307 -------YDFEKALQRYDKIRVKHTAKVIKRSRKIGKIAQIE-SKLLVALRNRVMKRM 356 (373)
T ss_pred -------ccHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHhcC-CchHHHHHHHHHHhC
Confidence 24578999999999999999999999999998876 677788888887654
No 32
>PRK07588 hypothetical protein; Provisional
Probab=100.00 E-value=3.1e-41 Score=342.25 Aligned_cols=357 Identities=16% Similarity=0.178 Sum_probs=247.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
.||+||||||+||++|+.|+++|++|+|+||.+.......+..++++++++|+++|+++.+.+.. .+...+.++.....
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~-~~~~~~~~~~~~g~ 79 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAG-YQIEHVRSVDPTGR 79 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhcc-CCccceEEEcCCCC
Confidence 38999999999999999999999999999999766555556678899999999999998887643 34455555543222
Q ss_pred eeeecCCcCCCC--CcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623 141 TQISYPLEKFHS--DVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV 217 (506)
Q Consensus 141 ~~~~~~~~~~~~--~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~ 217 (506)
....++...... ....+.++|..|.+.|.+.+.. ++++++++ |+++++++++ |++.+++|++ +++|+||+
T Consensus 80 ~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~--~v~i~~~~~v~~i~~~~~~---v~v~~~~g~~--~~~d~vIg 152 (391)
T PRK07588 80 RKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG--QVETIFDDSIATIDEHRDG---VRVTFERGTP--RDFDLVIG 152 (391)
T ss_pred EEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc--CeEEEeCCEEeEEEECCCe---EEEEECCCCE--EEeCEEEE
Confidence 222232222111 1122468899999999886643 68888885 9999887774 5566778874 56999999
Q ss_pred ecCCcccchhhccCCCCCCccceeeEEEec----cCCCCCCe-eEEEecCCCcEEEEecCCCeEEEEEEecCC-CCCCCC
Q 010623 218 CDGCFSNLRRSLCNPKVDVPSCFVGLVLEN----CNLPFENH-GHVVLADPSPILFYPISSNEVRCLVDIPGQ-KVPSIS 291 (506)
Q Consensus 218 AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~ 291 (506)
|||.+|.+|+.+...... ...+.+..... ...+.+.. ...+.+++.++..+|+++++..+.+....+ ..+.++
T Consensus 153 ADG~~S~vR~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 231 (391)
T PRK07588 153 ADGLHSHVRRLVFGPERD-FEHYLGCKVAACVVDGYRPRDERTYVLYNEVGRQVARVALRGDRTLFLFIFRAEHDNPPLT 231 (391)
T ss_pred CCCCCccchhhccCCccc-eEEEcCcEEEEEEcCCCCCCCCceEEEEeCCCCEEEEEecCCCCeEEEEEEEcCCccccCC
Confidence 999999999986433221 11222222211 11222222 233445566889999988876666654422 223345
Q ss_pred chHHHHHHHHhcCCCCC--hhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHH
Q 010623 292 NGEMANYLKTVVAPQIP--REIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVI 369 (506)
Q Consensus 292 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~ 369 (506)
.++..+.+.+.+....+ +.+.+.+. ....+...+.......+|..|||+|+|||||.|+|+.|||+|+||+||..
T Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~ 308 (391)
T PRK07588 232 PAEEKQLLRDQFGDVGWETPDILAALD---DVEDLYFDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGSGLAITEAYV 308 (391)
T ss_pred HHHHHHHHHHHhccCCccHHHHHHhhh---cccchheeeeeeeccCccccCCEEEEEccccCCCCccCCcHHHHHHHHHH
Confidence 55666666665442211 12222211 11112222223345678999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHh
Q 010623 370 LRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLS 435 (506)
Q Consensus 370 La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~ 435 (506)
|+++|.... .+.+.+|+.|+++|++++..++..++.+.+++..+ ++....+|+..+..+.
T Consensus 309 La~~L~~~~-----~~~~~al~~Y~~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~~~~~~~~ 368 (391)
T PRK07588 309 LAGELARAG-----GDHRRAFDAYEKRLRPFIAGKQAAAAKFLSVFAPK-TRFGLYVRNIAMKIMN 368 (391)
T ss_pred HHHHHHhcc-----CCHHHHHHHHHHHHHHHHHHHHhhcccccccccCC-CHHHHHHHHHHHHHhc
Confidence 999998532 13568999999999999999999999999988876 7888889999887765
No 33
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=100.00 E-value=3.8e-41 Score=341.66 Aligned_cols=362 Identities=18% Similarity=0.236 Sum_probs=253.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCc-----ccccccccchHHHHHHhCchhHHhhcccceecceE
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDR-----IVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYA 133 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~-----~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 133 (506)
+++||+||||||+|+++|+.|++.|++|+|+||.+..... .++..++++++++|+++|+++.+......+.....
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 83 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMR 83 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEE
Confidence 4689999999999999999999999999999998765432 23366899999999999999887543333444444
Q ss_pred EEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcC
Q 010623 134 LFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAP 213 (506)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~ 213 (506)
++.+... ...+...........+.+++..+.+.|.+.+++.++++++..+++++.++++. +.+++.+|+ +++||
T Consensus 84 ~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~~~~v~~i~~~~~~---~~v~~~~g~--~~~a~ 157 (388)
T PRK07608 84 VFGDAHA-RLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWFPARAQGLEVDPDA---ATLTLADGQ--VLRAD 157 (388)
T ss_pred EEECCCc-eeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEEcceeEEEEecCCe---EEEEECCCC--EEEee
Confidence 4433211 12211111111223467889999999999999886688884469998877664 445566775 46799
Q ss_pred eEEeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCC---CCC
Q 010623 214 LTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK---VPS 289 (506)
Q Consensus 214 ~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~ 289 (506)
+||+|||.+|.+|+.++.......+...++... ..+.+..+....++.+++.++++|++++...+.+..+... ...
T Consensus 158 ~vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 237 (388)
T PRK07608 158 LVVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAERPHRGTAYQWFRDDGILALLPLPDGHVSMVWSARTAHADELLA 237 (388)
T ss_pred EEEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecCCCCCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHHC
Confidence 999999999999999987654433333343332 2233333345566778889999999999776666543211 111
Q ss_pred CCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHH
Q 010623 290 ISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVI 369 (506)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~ 369 (506)
.+++++.+.+.+...+.+ ..+ ........++......+.|..+||+|+|||||.++|++|||+|+||+||.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~da~~ 309 (388)
T PRK07608 238 LSPEALAARVERASGGRL-GRL-------ECVTPAAGFPLRLQRVDRLVAPRVALVGDAAHLIHPLAGQGMNLGLRDVAA 309 (388)
T ss_pred CCHHHHHHHHHHHHHHhc-CCc-------eecCCcceeecchhhhhhhhcCceEEEeccccccCCccccccchhHHHHHH
Confidence 233444444444321100 000 001122345666566788999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhc
Q 010623 370 LRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSL 436 (506)
Q Consensus 370 La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 436 (506)
|+++|....... +....++|++|+++|+++...++..++.+.+++..+ ++....+|+..+..+..
T Consensus 310 La~~L~~~~~~~-~~~~~~~l~~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~ 374 (388)
T PRK07608 310 LADVLAGREPFR-DLGDLRLLRRYERARREDILALQVATDGLQRLFALP-GPLARWLRNAGMALVGA 374 (388)
T ss_pred HHHHHHHhhccC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhh
Confidence 999998653111 122347999999999999999999999999999876 77788899998876653
No 34
>PRK06847 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=336.69 Aligned_cols=358 Identities=19% Similarity=0.245 Sum_probs=245.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 139 (506)
..||+||||||+||++|+.|++.|++|+|+||++.......+..+++++++.|+++|+.+.+.+.. .+.....+++...
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~-~~~~~~~~~~~~g 82 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAG-FGFDGVDLFDPDG 82 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhC-CCccceEEECCCC
Confidence 579999999999999999999999999999999877667778889999999999999998876643 2344455554322
Q ss_pred eeeeecCCcCCC--CCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623 140 RTQISYPLEKFH--SDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI 216 (506)
Q Consensus 140 ~~~~~~~~~~~~--~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV 216 (506)
.....++..... ..+....++|..+.+.|.+.+.+. +++++++ +|+++..++++ +.+...+|++ +++|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~---~~v~~~~g~~--~~ad~vI 156 (375)
T PRK06847 83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAA-GADVRLGTTVTAIEQDDDG---VTVTFSDGTT--GRYDLVV 156 (375)
T ss_pred CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHh-CCEEEeCCEEEEEEEcCCE---EEEEEcCCCE--EEcCEEE
Confidence 222222211111 112235678999999999999876 6788887 59999877664 4455667764 6699999
Q ss_pred eecCCcccchhhccCCCCCCccceeeEEEec--cCC-CCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCCCCCCCch
Q 010623 217 VCDGCFSNLRRSLCNPKVDVPSCFVGLVLEN--CNL-PFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNG 293 (506)
Q Consensus 217 ~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 293 (506)
+|||.+|.+|+.+...... ..+.+..... ... +.......+.++++.+.++|.+++...+++..+.......+.+
T Consensus 157 ~AdG~~s~~r~~l~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 234 (375)
T PRK06847 157 GADGLYSKVRSLVFPDEPE--PEYTGQGVWRAVLPRPAEVDRSLMYLGPTTKAGVVPLSEDLMYLFVTEPRPDNPRIEPD 234 (375)
T ss_pred ECcCCCcchhhHhcCCCCC--ceeccceEEEEEecCCCCccceEEEeCCCcEEEEEcCCCCeEEEEEeccCcccccCChH
Confidence 9999999999988432111 1122211111 111 1112235666777788899998876655554443332333444
Q ss_pred HHHHHHHHhcCCCCChhhhHHHHhhhc-CCCeEEecCCcc-CCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHH
Q 010623 294 EMANYLKTVVAPQIPREIFHSFVAAVD-GGNIKTMPNRSM-PAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILR 371 (506)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La 371 (506)
+..+.+++.+....++.+ ..+.+.+. ...+..+++... ...+|..|||+|+|||||.++|++|||+|+||+||.+|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La 313 (375)
T PRK06847 235 TLAALLRELLAPFGGPVL-QELREQITDDAQVVYRPLETLLVPAPWHRGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLA 313 (375)
T ss_pred HHHHHHHHHHhhcCchHH-HHHHHhcCCccceeeccHhhccCCCCccCCeEEEEechhccCCCCccccHHHHHHHHHHHH
Confidence 555556554433222122 22222222 223344454432 346799999999999999999999999999999999999
Q ss_pred HHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCch---hHHHHHHHHHHHH
Q 010623 372 NLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDE---ARKEMRQACFDYL 434 (506)
Q Consensus 372 ~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~---~~~~~r~~~~~~~ 434 (506)
++|... ..++++|+.|+++|+|++..++..++.+.+.+... .+ ....+|+.++.++
T Consensus 314 ~~L~~~------~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 372 (375)
T PRK06847 314 EELARH------DSLEAALQAYYARRWERCRMVVEASARIGRIEIEG-GDKAEHAGLMRESMELLA 372 (375)
T ss_pred HHHhhC------CcHHHHHHHHHHHHHHHHHHHHHHHHHhhheecCC-CCccchHHHHHHHHHHhc
Confidence 999752 34678999999999999999999999888886544 23 4456677766543
No 35
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=3.4e-41 Score=342.92 Aligned_cols=363 Identities=21% Similarity=0.236 Sum_probs=248.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC---CCcEEEEecCCCC-----CCcccccccccchHHHHHHhCchhHHhhcccceec
Q 010623 59 FDADVIVVGAGVAGAALANTLAKD---GRRVHVIERDLSE-----PDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVF 130 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~---G~~v~vvE~~~~~-----~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~ 130 (506)
+.+||+||||||+|+++|+.|+++ |++|+|+||.... ....++..+++++++.|+++|+++.+.+.. .+..
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~-~~~~ 80 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCA-TPIT 80 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhc-CCcc
Confidence 358999999999999999999998 9999999995321 122457789999999999999998887643 2333
Q ss_pred ceEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEE
Q 010623 131 GYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELT 209 (506)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~ 209 (506)
...+...+......+...+......++.++|..+.+.|.+.+.+.++++++++ +++++.+++++ +.++.++|. +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~---~~v~~~~g~--~ 155 (395)
T PRK05732 81 HIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGS---VRVTLDDGE--T 155 (395)
T ss_pred EEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe---EEEEECCCC--E
Confidence 33333332221111111122222334678899999999999888778888877 59999877664 445566675 3
Q ss_pred EEcCeEEeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCC--
Q 010623 210 AYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK-- 286 (506)
Q Consensus 210 i~a~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-- 286 (506)
+++|+||+|||.+|.+|+.+++...........+... ....+........+.+++.++++|.++++..+++.++.+.
T Consensus 156 ~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~g~~~~~~~~~~~~~~ 235 (395)
T PRK05732 156 LTGRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEAHQGRAFERFTEHGPLALLPMSDGRCSLVWCHPLEDAE 235 (395)
T ss_pred EEeCEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCCCCCEEEEeecCCCCEEEeECCCCCeEEEEECCHHHHH
Confidence 6799999999999999999987644333222222211 1111122222334556678889999999877777665321
Q ss_pred -CCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHH
Q 010623 287 -VPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALS 365 (506)
Q Consensus 287 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~ 365 (506)
...++.++..+.+.+.+. ..+ ...........+++....+.+|..|||+|+|||||.++|++|||+|+||+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~l~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~al~ 307 (395)
T PRK05732 236 EVLSWSDAQFLAELQQAFG----WRL----GRITHAGKRSAYPLALVTAAQQISHRLALVGNAAQTLHPIAGQGFNLGLR 307 (395)
T ss_pred HHHcCCHHHHHHHHHHHHH----hhh----cceeecCCcceecccccchhhhccCcEEEEeecccccCCccccccchHHH
Confidence 112233333333333211 000 01111223345666666678899999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhc
Q 010623 366 DIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSL 436 (506)
Q Consensus 366 Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 436 (506)
||.+|+++|..+.....+...+++|+.|+++|++++...+..++.+.+++..+ .+....+|+..+..+..
T Consensus 308 Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~ 377 (395)
T PRK05732 308 DVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQDREATIGFTDGLVRLFANR-WAPLVVGRNLGLMAMDL 377 (395)
T ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHcc
Confidence 99999999976532111112357999999999999999999999999999875 67788889988777654
No 36
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=100.00 E-value=5.3e-41 Score=308.76 Aligned_cols=271 Identities=56% Similarity=0.965 Sum_probs=255.8
Q ss_pred cCeEEeecCCcccchhhccCCCCCCccceeeEEEeccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCCCCCCC
Q 010623 212 APLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSIS 291 (506)
Q Consensus 212 a~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 291 (506)
|+++|+|||.+|++|+.+....+...+++.|+...++++|.++++++++++++++.+|+++.+++|+.+.++.++.|+.+
T Consensus 2 A~LtivaDG~~S~fRk~l~~~~~~v~S~fvGl~l~~~~lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp~~k~P~~~ 81 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELSDNKPQVRSYFVGLILKDAPLPKPNHGHVILGKPGPILLYQISSNETRVLVDVPGPKLPSVS 81 (276)
T ss_pred CCEEEEecCCchHHHHhhcCCCCceeeeEEEEEEcCCCCCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeCCCccCCcc
Confidence 78999999999999999997777788899999999999999999999999999999999999999999999988888888
Q ss_pred chHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHH
Q 010623 292 NGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILR 371 (506)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La 371 (506)
.+++++++++.+.|.+|+++++.+.++++.++++.+|....++......+++++|||+++.||++|+||+.|+.|+..|+
T Consensus 82 ~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~rirsMPn~~lp~~~~~~~G~vllGDA~nmrHPLTGgGMTVAl~Dv~lL~ 161 (276)
T PF08491_consen 82 NGELKEYLREVVAPQLPEELRPSFEKALEDGRIRSMPNSFLPASPNWKPGVVLLGDAANMRHPLTGGGMTVALNDVVLLR 161 (276)
T ss_pred chHHHHHHHHHHHhhchHHHHHHHHHHhccCCcceecccccCCCCCCCCCEEEEehhhcCcCCccccchhhHHHHHHHHH
Confidence 88999999999999999999999999999999999999999988888899999999999999999999999999999999
Q ss_pred HHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCchhHHHhhcCC
Q 010623 372 NLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGL 451 (506)
Q Consensus 372 ~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~ 451 (506)
+.|....+..+...+.+++++|+.+|++....++.++.+++.+|..+ ++....+|+.||+|++.|+.+.++|+.+++|+
T Consensus 162 ~lL~~~~dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF~a~-~~~l~~Lr~gcf~Yf~~GG~~~~gpv~LLsgl 240 (276)
T PF08491_consen 162 DLLSPIPDLSDTKAVLEALKKFHWKRKPLSSVINILAQALYSLFAAD-DDYLKALRQGCFKYFQLGGECVSGPVALLSGL 240 (276)
T ss_pred HHHhhhcCcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCCCCcchHHHhccC
Confidence 99998877778888999999999999999999999999999999998 77788999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHhhccCC---ChHHH
Q 010623 452 NPRPLILVFHFFAVAIYGVGRILLPFP---SPYRF 483 (506)
Q Consensus 452 ~~~p~~~~~h~~~~~l~~~~~~l~~~~---~~~~~ 483 (506)
.++|..++.||+.|.+|+++..+.+.+ .|.+.
T Consensus 241 ~p~P~~L~~Hff~Va~~~i~~~~~~~p~~~~P~~~ 275 (276)
T PF08491_consen 241 NPRPLVLFYHFFAVAFYAIYLNLKPRPWYGFPLAL 275 (276)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHcccCCcccCChhh
Confidence 999999999999999999999998876 55544
No 37
>PRK06475 salicylate hydroxylase; Provisional
Probab=100.00 E-value=3.1e-40 Score=335.47 Aligned_cols=354 Identities=20% Similarity=0.246 Sum_probs=238.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
-+|+||||||+||++|+.|+++|++|+|+||.+.....+.+..++++++++|+++|+++.+....... ..+.+. ++..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~-~~~~~~-~g~~ 80 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTP-KALYLM-DGRK 80 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCc-ceEEEe-cCCC
Confidence 58999999999999999999999999999999877777788889999999999999998887644322 222222 2221
Q ss_pred ee--eecCCcCCC---CCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCe
Q 010623 141 TQ--ISYPLEKFH---SDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPL 214 (506)
Q Consensus 141 ~~--~~~~~~~~~---~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~ 214 (506)
.. ......... .......++|..|.+.|.+.+.+.+++++++++ |+++.++++++. +++.+.+++ .+++||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~-v~~~~~~~~-~~~~adl 158 (400)
T PRK06475 81 ARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSIT-ATIIRTNSV-ETVSAAY 158 (400)
T ss_pred cceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceE-EEEEeCCCC-cEEecCE
Confidence 11 111111100 111223679999999999999877688898885 999988776543 444333333 2467999
Q ss_pred EEeecCCcccchhhccCCCCCCc--cceeeEEEeccCC--------CCCCeeEEEecCCCcEEEEecCCCeEEEEEEecC
Q 010623 215 TIVCDGCFSNLRRSLCNPKVDVP--SCFVGLVLENCNL--------PFENHGHVVLADPSPILFYPISSNEVRCLVDIPG 284 (506)
Q Consensus 215 vV~AdG~~S~vR~~l~~~~~~~~--~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 284 (506)
||+|||.+|.+|++++.+...+. ..+.+.+.. ..+ +..+....++++++.+..||+++++..+++....
T Consensus 159 vIgADG~~S~vR~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~ 237 (400)
T PRK06475 159 LIACDGVWSMLRAKAGFSKARFSGHIAWRTTLAA-DALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNFVAITG 237 (400)
T ss_pred EEECCCccHhHHhhcCCCCCCcCCceEEEEEeeh-hhcchhhhhhcccCCceEEEEcCCCEEEEEEccCCcEEEEEEEEc
Confidence 99999999999999865332221 122222211 111 1222345667888899999999876554443322
Q ss_pred C--CCCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCC-CCCcEEEEccCCCCCCCCcchhhH
Q 010623 285 Q--KVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPY-PTPGALLMGDAFNMRHPLTGGGMT 361 (506)
Q Consensus 285 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~rv~LvGDAAh~~~P~~GqG~n 361 (506)
. ....+......+.+.+.+ ..+++.+...+... .....||+......+| ..|||+|+|||||+++|+.|||+|
T Consensus 238 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~i~~~---~~~~~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n 313 (400)
T PRK06475 238 GENPGEVWSKTGDKAHLKSIY-ADWNKPVLQILAAI---DEWTYWPLFEMADAQFVGPDRTIFLGDASHAVTPFAAQGAA 313 (400)
T ss_pred CCCCcccCCCCCCHHHHHHHh-cCCChHHHHHHhcC---CceeECcCcccCCCcceecCCEEEEecccccCCchhhhhHH
Confidence 1 111222222233444433 34555555443222 2345677766655565 569999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 010623 362 VALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFD 432 (506)
Q Consensus 362 ~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~ 432 (506)
+||+||..|+++|... ++..+|+.|+++|+|++..++..++.. +.+... .+.....|+..+.
T Consensus 314 ~aieDa~~La~~L~~~-------~~~~aL~~Ye~~R~~r~~~~~~~s~~~-~~~~~~-~~~~~~~r~~~~~ 375 (400)
T PRK06475 314 MAIEDAAALAEALDSD-------DQSAGLKRFDSVRKERIAAVAKRGQLN-RFAYHA-TGIFALGRNMLFA 375 (400)
T ss_pred HHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCC-CCHHHHHHHHHHh
Confidence 9999999999999631 246899999999999999999888744 444333 3445556776654
No 38
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=100.00 E-value=5e-40 Score=332.00 Aligned_cols=356 Identities=19% Similarity=0.234 Sum_probs=232.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC--CcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP--DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD 137 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~--~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 137 (506)
++||+||||||+|+++|+.|+++|++|+|+||.+... ...++..++++++++|+++|+++.+.... ....+..++.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~-~~~~~~~~~~~ 80 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREG-LVHEGTEIAFD 80 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcC-ceecceEEeeC
Confidence 5899999999999999999999999999999997532 23345568999999999999999887743 34455666555
Q ss_pred CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623 138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI 216 (506)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV 216 (506)
+......++ ..........+.+..+...|.+.+.+. ++.++++ +++.+.+.++....|++. .+|+..+++||+||
T Consensus 81 ~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~~~~~~~v~~~~~~~~~~~V~~~-~~g~~~~i~adlvI 156 (390)
T TIGR02360 81 GQRFRIDLK--ALTGGKTVMVYGQTEVTRDLMEAREAA-GLTTVYDADDVRLHDLAGDRPYVTFE-RDGERHRLDCDFIA 156 (390)
T ss_pred CEEEEEecc--ccCCCceEEEeCHHHHHHHHHHHHHhc-CCeEEEeeeeEEEEecCCCccEEEEE-ECCeEEEEEeCEEE
Confidence 543333333 111111112234668888999988877 4556566 577776533222235543 36765678899999
Q ss_pred eecCCcccchhhccCCCCCC-----ccceeeEEEeccCCCCCCeeEEEecCCCcEEEEecCCC-eEEEEEEecCCC-CCC
Q 010623 217 VCDGCFSNLRRSLCNPKVDV-----PSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSN-EVRCLVDIPGQK-VPS 289 (506)
Q Consensus 217 ~AdG~~S~vR~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~-~~~ 289 (506)
+|||.+|.+|++++...... ...+.++.. ..+.......+.+.+..+.++|+.++ ..+|++..+... .+.
T Consensus 157 GADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (390)
T TIGR02360 157 GCDGFHGVSRASIPAEVLKEFERVYPFGWLGILS---ETPPVSHELIYSNHERGFALCSMRSATRSRYYVQVPLTDKVED 233 (390)
T ss_pred ECCCCchhhHHhcCcccceeeeccCCcceEEEec---CCCCCCCceEEEeCCCceEEEeccCCCcceEEEEcCCCCChhh
Confidence 99999999999986533211 112223222 11112222344555666667777543 334666554322 333
Q ss_pred CCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHH
Q 010623 290 ISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVI 369 (506)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~ 369 (506)
+..+...+.+.+.+. +.+.+.+... ........++......+|..|||+|+|||||.|+|+.|||+|+||+||.+
T Consensus 234 ~~~~~~~~~l~~~~~----~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~grvvLvGDAAH~~~P~~GQG~n~aieDA~~ 308 (390)
T TIGR02360 234 WSDDRFWAELKRRLP----SEAAERLVTG-PSIEKSIAPLRSFVCEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVHY 308 (390)
T ss_pred CChhHHHHHHHHhcC----chhhhhhccC-CccceeeeeHHhhccccCccCCEEEEEccccCCCCCcCCchhHHHHHHHH
Confidence 444444555544332 2222221111 11112334555566788999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCc--hhHHHHHHHHHH
Q 010623 370 LRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPD--EARKEMRQACFD 432 (506)
Q Consensus 370 La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~r~~~~~ 432 (506)
|+++|..... .+.+++|+.|+++|++++..++..|+.+.++++..++ +....++.++++
T Consensus 309 La~~L~~~~~----~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (390)
T TIGR02360 309 LYEALLEHYQ----EGSSAGIEGYSARALARVWKAERFSWWMTSLLHRFPDTDAFDQRIQQAELE 369 (390)
T ss_pred HHHHHHHHhc----cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Confidence 9999986421 2356899999999999999999999999888775533 333344444443
No 39
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=100.00 E-value=2e-41 Score=339.50 Aligned_cols=337 Identities=24% Similarity=0.299 Sum_probs=223.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhccccee-cceEEEEC-
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRV-FGYALFKD- 137 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~~~~- 137 (506)
++||+||||||+|+++|+.|+++|++|+|+||++......++..++++++++|+++|+++.+.+...... ....++..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~ 80 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGI 80 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEET
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeeccc
Confidence 3799999999999999999999999999999999888888899999999999999999998877543221 22223322
Q ss_pred -Cce-----eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEE
Q 010623 138 -GNR-----TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELT 209 (506)
Q Consensus 138 -~~~-----~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~ 209 (506)
+.. .............+....++|..|++.|.+.+.+. ++++.+++ ++++.++++++. +.+.+ .+|+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-gv~i~~~~~v~~~~~d~~~~~-~~~~~~~~g~~~~ 158 (356)
T PF01494_consen 81 SDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEER-GVDIRFGTRVVSIEQDDDGVT-VVVRDGEDGEEET 158 (356)
T ss_dssp TTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHH-TEEEEESEEEEEEEEETTEEE-EEEEETCTCEEEE
T ss_pred CCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhh-hhhheeeeecccccccccccc-cccccccCCceeE
Confidence 110 00001111112233446788999999999999988 49999885 999999988766 44444 4787778
Q ss_pred EEcCeEEeecCCcccchhhccCCCCCCcc----ceeeEEEeccCCCC--CCeeEEEecCCCcEEEEecCC-CeEEEEEEe
Q 010623 210 AYAPLTIVCDGCFSNLRRSLCNPKVDVPS----CFVGLVLENCNLPF--ENHGHVVLADPSPILFYPISS-NEVRCLVDI 282 (506)
Q Consensus 210 i~a~~vV~AdG~~S~vR~~l~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~ 282 (506)
++||+||+|||.+|.+|+.++...+.... ....+... ..++. .+...+...+.+.++++|..+ +...+.+..
T Consensus 159 i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 237 (356)
T PF01494_consen 159 IEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFD-SDLSDPWEDHCFIYSPPSGGFAIIPLENGDRSRFVWFL 237 (356)
T ss_dssp EEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEE-CHSHTTTSCEEEEEEETTEEEEEEEETTTTEEEEEEEE
T ss_pred EEEeeeecccCcccchhhhccccccCccccccccccccccc-cccccccccccccccccccceeEeeccCCccceEEEee
Confidence 99999999999999999999875332221 12222222 22331 122223333444567899988 434455544
Q ss_pred cCCC-CCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhH
Q 010623 283 PGQK-VPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMT 361 (506)
Q Consensus 283 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n 361 (506)
+... ......+...+.+.+.+.+ ......... .......++.......+|.+|||+|+|||||.|+|++|||+|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~GqG~n 312 (356)
T PF01494_consen 238 PFDESKEERPEEFSPEELFANLPE----IFGPDLLET-EIDEISAWPIPQRVADRWVKGRVLLIGDAAHAMDPFSGQGIN 312 (356)
T ss_dssp ETTTTTCCSTHCHHHHHHHHHHHH----HHHTCHHHH-EEEEEEEEEEEEEEESSSEETTEEE-GGGTEEE-CCTSHHHH
T ss_pred eccccccccccccccccccccccc----ccccccccc-ccccccccccccccccccccceeEEeccceeeecccccCCCC
Confidence 4222 1111222222222221111 111111111 223455666666678899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHH
Q 010623 362 VALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTL 407 (506)
Q Consensus 362 ~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~ 407 (506)
+||+||..|++.|..+.+ +...+++|+.|+++|++++..++..
T Consensus 313 ~Ai~da~~La~~L~~~~~---g~~~~~~l~~Y~~~r~~~~~~~~~~ 355 (356)
T PF01494_consen 313 MAIEDAAALAELLAAALK---GEASEEALKAYEQERRPRARKAVQF 355 (356)
T ss_dssp HHHHHHHHHHHHHHHHHT---TSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999997643 2344689999999999999988764
No 40
>PRK08163 salicylate hydroxylase; Provisional
Probab=100.00 E-value=5.5e-39 Score=326.62 Aligned_cols=355 Identities=19% Similarity=0.240 Sum_probs=239.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD 137 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 137 (506)
.++.||+||||||+||++|+.|+++|++|+|+||.+.....+.+..++++++++|+++|+++.+.... .....+.+++.
T Consensus 2 ~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~-~~~~~~~~~~~ 80 (396)
T PRK08163 2 TKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRA-VFTDHLTMMDA 80 (396)
T ss_pred CCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhc-cCCcceEEEeC
Confidence 34689999999999999999999999999999999877777778889999999999999998876533 23334444432
Q ss_pred --CceeeeecCCcC-C--CCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEE
Q 010623 138 --GNRTQISYPLEK-F--HSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAY 211 (506)
Q Consensus 138 --~~~~~~~~~~~~-~--~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~ 211 (506)
+.. ....+... . ........++|..+.+.|.+.+.+.++++++++ +++++.+++++ +++.+.+|+ +++
T Consensus 81 ~~~~~-~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~v~~~~g~--~~~ 154 (396)
T PRK08163 81 VDAEE-VVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG---VTVFDQQGN--RWT 154 (396)
T ss_pred CCCCE-EEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc---eEEEEcCCC--EEe
Confidence 222 11122111 0 011122468999999999999988877888888 49999877663 455567776 367
Q ss_pred cCeEEeecCCcccchhhccCCCCCC--ccceeeEEEeccCCCC---CCeeEEEecCCCcEEEEecCCCe-EEEEEEecCC
Q 010623 212 APLTIVCDGCFSNLRRSLCNPKVDV--PSCFVGLVLENCNLPF---ENHGHVVLADPSPILFYPISSNE-VRCLVDIPGQ 285 (506)
Q Consensus 212 a~~vV~AdG~~S~vR~~l~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~ 285 (506)
||+||+|||.+|.+|+.+....... ...+.+.+ ...+.+. .+....+.++++.++.+|+.++. .++++..+..
T Consensus 155 ad~vV~AdG~~S~~r~~~~g~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~ 233 (396)
T PRK08163 155 GDALIGCDGVKSVVRQSLVGDAPRVTGHVVYRAVI-DVDDMPEDLRINAPVLWAGPHCHLVHYPLRGGEQYNLVVTFHSR 233 (396)
T ss_pred cCEEEECCCcChHHHhhccCCCCCccccEEEEEEE-eHHHCcchhccCccEEEEcCCceEEEEEecCCeEEEEEEEECCC
Confidence 9999999999999999884321111 11122222 1111211 12234556677788899998775 3444444332
Q ss_pred CCCCC--CchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecC-CccCCCCCCCCcEEEEccCCCCCCCCcchhhHH
Q 010623 286 KVPSI--SNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPN-RSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTV 362 (506)
Q Consensus 286 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ 362 (506)
....+ .... .+.+.+.+.. +.+.+...+... ..+..+.. ...+..+|..|||+|+|||||.|+|++|||+|+
T Consensus 234 ~~~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ 308 (396)
T PRK08163 234 EQEEWGVKDGS-KEEVLSYFEG-IHPRPRQMLDKP---TSWKRWATADREPVAKWSTGRVTLLGDAAHPMTQYMAQGACM 308 (396)
T ss_pred CCcccccCCCC-HHHHHHHHcC-CChHHHHHHhcC---CceeEccccCCCcccccccCcEEEEecccccCCcchhccHHH
Confidence 21111 1112 2223333332 333333332211 12222222 223457889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 010623 363 ALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFD 432 (506)
Q Consensus 363 ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~ 432 (506)
||+||.+|++.|... ..+++++|+.|+++|++++..++..++.+.++++.. .....+|+....
T Consensus 309 ai~Da~~La~~L~~~-----~~~~~~al~~y~~~R~~r~~~~~~~s~~~~~~~~~~--~~~~~~r~~~~~ 371 (396)
T PRK08163 309 ALEDAVTLGKALEGC-----DGDAEAAFALYESVRIPRTARVVLSAREMGRIYHAK--GVERQVRNLLWK 371 (396)
T ss_pred HHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhCCC--CHHHHHHHHHhh
Confidence 999999999999753 234678999999999999999999999999888754 345566775543
No 41
>PRK05868 hypothetical protein; Validated
Probab=100.00 E-value=5.1e-39 Score=322.42 Aligned_cols=352 Identities=17% Similarity=0.133 Sum_probs=231.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC-Cc
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD-GN 139 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~-~~ 139 (506)
.||+||||||+|+++|+.|+++|++|+|+||.+.....+.+..+.++++++|+++|+++.+.+.. ....+..+++. +.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~-~~~~~~~~~~~~g~ 80 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHK-TRIRGASFVDRDGN 80 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhc-cCccceEEEeCCCC
Confidence 38999999999999999999999999999999877666666678899999999999998886643 33445555443 32
Q ss_pred eeeeecCCcCCC--CCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623 140 RTQISYPLEKFH--SDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI 216 (506)
Q Consensus 140 ~~~~~~~~~~~~--~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV 216 (506)
............ .....+.+.|..|.+.|.+.+. .++++++++ |++++++++ +|+++.++|++ ++||+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~--~~v~i~~~~~v~~i~~~~~---~v~v~~~dg~~--~~adlvI 153 (372)
T PRK05868 81 ELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQ--PSVEYLFDDSISTLQDDGD---SVRVTFERAAA--REFDLVI 153 (372)
T ss_pred EEeecccccccCCCCCCceEEEEHHHHHHHHHHhcc--CCcEEEeCCEEEEEEecCC---eEEEEECCCCe--EEeCEEE
Confidence 221111101111 1112346778889888876543 378898885 999987766 35566778874 5699999
Q ss_pred eecCCcccchhhccCCCCCCc--cceeeEEEe-ccCCCCCCeeEEEecCCCcEEEEecCCCe-EEEEEEecCCC--CCCC
Q 010623 217 VCDGCFSNLRRSLCNPKVDVP--SCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNE-VRCLVDIPGQK--VPSI 290 (506)
Q Consensus 217 ~AdG~~S~vR~~l~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~--~~~~ 290 (506)
+|||.+|.+|+++..+..... .......+. ....+......++++++..+.++|..++. ...++.+.... .+..
T Consensus 154 gADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (372)
T PRK05868 154 GADGLHSNVRRLVFGPEEQFVKRLGTHAAIFTVPNFLELDYWQTWHYGDSTMAGVYSARNNTEARAALAFMDTELRIDYR 233 (372)
T ss_pred ECCCCCchHHHHhcCCcccceeecceEEEEEEcCCCCCCCcceEEEecCCcEEEEEecCCCCceEEEEEEecCCcccccC
Confidence 999999999999865432211 111111211 11122222223345677778889988753 34344433221 1111
Q ss_pred CchHHHHHHHHhcCC-CCC-hhhhHHHHhhhcCCCeEEec-CCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHH
Q 010623 291 SNGEMANYLKTVVAP-QIP-REIFHSFVAAVDGGNIKTMP-NRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDI 367 (506)
Q Consensus 291 ~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da 367 (506)
..+...+.+.+.+.. .+. +.+.+. +.......++ +.....++|.+|||+|+|||||+++|+.|||+|+||+||
T Consensus 234 ~~~~~~~~l~~~f~~~~w~~~~l~~~----~~~~~~~~~~~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqGa~~AleDa 309 (372)
T PRK05868 234 DTEAQFAELQRRMAEDGWVRAQLLHY----MRSAPDFYFDEMSQILMDRWSRGRVALVGDAGYCCSPLSGQGTSVALLGA 309 (372)
T ss_pred ChHHHHHHHHHHHhhCCCchHHHHhh----cccCCceeeccceEEecCCCCCCCeeeeecccccCCCccCccHHHHHHHH
Confidence 223334445444431 122 333322 2211112233 444456899999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 010623 368 VILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQAC 430 (506)
Q Consensus 368 ~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~ 430 (506)
+.|++.|... ..+++++|+.||+..||+..+.+.........|... ++...++|+..
T Consensus 310 ~~La~~L~~~-----~~~~~~al~~ye~~~~~~~~~~q~~~~~~~~~~~p~-~~~~~~~~~~~ 366 (372)
T PRK05868 310 YILAGELKAA-----GDDYQLGFANYHAEFHGFVERNQWLVSDNIPGGAPI-PQEEFERIVHS 366 (372)
T ss_pred HHHHHHHHhc-----CCCHHHHHHHHHHHHhHHHHHhhhhhhccCCcccCC-CHHHHHHhhcc
Confidence 9999999763 134789999999999999998888777666666654 56655666543
No 42
>PRK07538 hypothetical protein; Provisional
Probab=100.00 E-value=6.5e-39 Score=327.17 Aligned_cols=337 Identities=20% Similarity=0.216 Sum_probs=224.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
+||+||||||+||++|+.|+++|++|+|+||.+...+...+..+.+++++.|+++|+++.+.... .+...+.+++....
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~-~~~~~~~~~~~~g~ 79 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIG-IRTRELAYFNRHGQ 79 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhC-CCCcceEEEcCCCC
Confidence 48999999999999999999999999999999877666778889999999999999998876633 23344555543222
Q ss_pred eeeecCCcC-CCCCcccccccchHHHHHHHHHHHc-CCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEE
Q 010623 141 TQISYPLEK-FHSDVAGRGFHNGRFVQRLREKAAS-LPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTI 216 (506)
Q Consensus 141 ~~~~~~~~~-~~~~~~~~~i~~~~l~~~L~~~~~~-~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV 216 (506)
.....+... .......+.++|..|.+.|.+.+.+ .+.+.+++++ |+++.++++++. +.+.+ .+|+..+++||+||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~-~~~~~~~~g~~~~~~adlvI 158 (413)
T PRK07538 80 RIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV-VFLGDRAGGDLVSVRGDVLI 158 (413)
T ss_pred EEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE-EEEeccCCCccceEEeeEEE
Confidence 111111110 0111123468999999999999866 3556688774 999988766533 33333 34545578899999
Q ss_pred eecCCcccchhhccCCCCCCccceeeEEEecc--CCCC--CCeeEEEec-CCCcEEEEecCCC-------eEEEEEEecC
Q 010623 217 VCDGCFSNLRRSLCNPKVDVPSCFVGLVLENC--NLPF--ENHGHVVLA-DPSPILFYPISSN-------EVRCLVDIPG 284 (506)
Q Consensus 217 ~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~-~~~~~~~~p~~~~-------~~~~~~~~~~ 284 (506)
+|||.+|.+|++++..... ..+.+...+.. ..+. ......+++ +++.+.+||+.++ ..+|.+..+.
T Consensus 159 gADG~~S~vR~~l~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~ 236 (413)
T PRK07538 159 GADGIHSAVRAQLYPDEGP--PRWNGVMMWRGVTEAPPFLTGRSMVMAGHLDGKLVVYPISEPVDADGRQLINWVAEVRV 236 (413)
T ss_pred ECCCCCHHHhhhhcCCCCC--CcccceEEEEEeecCccccCCCcEEEEcCCCCEEEEEECCCCcccCCceEEEEEEEEcC
Confidence 9999999999999754321 22333332211 1111 111223343 3567888998753 4566665543
Q ss_pred CC-----CCCCCchHHHHHHHHhcCCCCCh--hhhHHHHhhhcCCCeEEecCCcc-CCCCCCCCcEEEEccCCCCCCCCc
Q 010623 285 QK-----VPSISNGEMANYLKTVVAPQIPR--EIFHSFVAAVDGGNIKTMPNRSM-PAAPYPTPGALLMGDAFNMRHPLT 356 (506)
Q Consensus 285 ~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~rv~LvGDAAh~~~P~~ 356 (506)
.. ...+..+...+.+.+.+..+..+ .+.+.+.. ...+..+|+... +.++|..|||+|+|||||.|+|++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~p~~~~~~~~~w~~grv~LvGDAAH~~~P~~ 313 (413)
T PRK07538 237 DDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRA---AEAIYEYPMVDRDPLPRWTRGRVTLLGDAAHPMYPVG 313 (413)
T ss_pred CccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhc---CcceeeccccccCCCCcccCCcEEEEeeccCcCCCCC
Confidence 21 11222222222222222221111 12222211 234455666543 467899999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHH
Q 010623 357 GGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGA 410 (506)
Q Consensus 357 GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~ 410 (506)
|||+|+||+||..|++.|... .+.+++|+.|+++|++++..++..++.
T Consensus 314 GqG~~~Ai~Da~~La~~L~~~------~~~~~aL~~Ye~~R~~~~~~~~~~s~~ 361 (413)
T PRK07538 314 SNGASQAILDARALADALAAH------GDPEAALAAYEAERRPATAQIVLANRL 361 (413)
T ss_pred cccHHHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHhhHHHHHHHHHhhh
Confidence 999999999999999999863 126789999999999999998877765
No 43
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=100.00 E-value=3.4e-38 Score=322.14 Aligned_cols=344 Identities=20% Similarity=0.218 Sum_probs=226.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC-CcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccce---ecceE-EE
Q 010623 61 ADVIVVGAGVAGAALANTLAKDG-RRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQR---VFGYA-LF 135 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G-~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~---~~~~~-~~ 135 (506)
.+|+||||||+||++|+.|+++| ++|+|+||.+.....+.+..+.++++++|+++|+.+.+.+..... ..... .+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 80 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEW 80 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEE
Confidence 37999999999999999999998 699999999877666677789999999999999988776643211 11111 11
Q ss_pred ECCceee-eecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcC
Q 010623 136 KDGNRTQ-ISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAP 213 (506)
Q Consensus 136 ~~~~~~~-~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~ 213 (506)
.++.... .... .........++|..|.+.|.+.+.. ..++++ +|+++.+++++ +++..++|++ ++||
T Consensus 81 ~~~~~~~~~~~~---~~~~~~~~~i~R~~l~~~L~~~~~~---~~v~~~~~v~~i~~~~~~---~~v~~~~g~~--~~ad 149 (414)
T TIGR03219 81 RNGSDASYLGAT---IAPGVGQSSVHRADFLDALLKHLPE---GIASFGKRATQIEEQAEE---VQVLFTDGTE--YRCD 149 (414)
T ss_pred EecCccceeeee---ccccCCcccCCHHHHHHHHHHhCCC---ceEEcCCEEEEEEecCCc---EEEEEcCCCE--EEee
Confidence 2221111 1100 0011112357899999999987743 345566 59999887764 5566677864 6699
Q ss_pred eEEeecCCcccchhhccCC--CCCCccc------eeeEEEecc--------CCCC--CCeeEEEecCCCcEEEEecCCCe
Q 010623 214 LTIVCDGCFSNLRRSLCNP--KVDVPSC------FVGLVLENC--------NLPF--ENHGHVVLADPSPILFYPISSNE 275 (506)
Q Consensus 214 ~vV~AdG~~S~vR~~l~~~--~~~~~~~------~~~~~~~~~--------~~~~--~~~~~~~~~~~~~~~~~p~~~~~ 275 (506)
+||+|||.+|.+|+.+... ....... +.+++.... ..+. .+...+++++++.++.||+.+++
T Consensus 150 ~vVgADG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~ 229 (414)
T TIGR03219 150 LLIGADGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPVRQGR 229 (414)
T ss_pred EEEECCCccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccccccccccccceEEEcCCCeEEEEECCCCc
Confidence 9999999999999988531 1111112 222221100 0000 11234667788888899998887
Q ss_pred EEE-EEEecCC--CC------CCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCc-cCCCCCCCCcEEEE
Q 010623 276 VRC-LVDIPGQ--KV------PSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRS-MPAAPYPTPGALLM 345 (506)
Q Consensus 276 ~~~-~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~rv~Lv 345 (506)
..+ .+..... .. ..+..+...+.+.+.+ ..+++.+.+.+... ... ..+++.. ...++|.+|||+|+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~~~~~~~-~~~--~~~~~~~~~~~~~w~~grv~Li 305 (414)
T TIGR03219 230 LINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAF-AGWGDAARALLECI-PAP--TLWALHDLAELPGYVHGRVALI 305 (414)
T ss_pred EEEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHh-cCCCHHHHHHHHhC-CCC--CceeeeecccccceeeCcEEEE
Confidence 433 3332211 00 1121222233333333 34555555443322 221 1233222 24578999999999
Q ss_pred ccCCCCCCCCcchhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchh
Q 010623 346 GDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEA 422 (506)
Q Consensus 346 GDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~ 422 (506)
|||||.|+|+.|||+|+||+||..|++.|.... ..+.+++++|+.|+++|+|++..++..|+.+.+++... ++.
T Consensus 306 GDAAH~m~P~~GqGa~~AieDA~~La~~L~~~~--~~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~-~~~ 379 (414)
T TIGR03219 306 GDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTE--LEAGDLPALLEAYDDVRRPRACRVQRTSREAGELYELR-DPA 379 (414)
T ss_pred EcccCCCCCCcCcchHhHHHHHHHHHHHHHhhc--cCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC-Chh
Confidence 999999999999999999999999999998642 12356789999999999999999999999998888765 443
No 44
>PRK07236 hypothetical protein; Provisional
Probab=100.00 E-value=2.8e-37 Score=312.50 Aligned_cols=334 Identities=20% Similarity=0.182 Sum_probs=216.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC-CcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP-DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD 137 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~-~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 137 (506)
+..+|+||||||+||++|+.|+++|++|+|+||.+... ....|..+++++++.|+++|+.+.. ... .......++..
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~-~~~-~~~~~~~~~~~ 82 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPA-DIG-VPSRERIYLDR 82 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccc-ccc-cCccceEEEeC
Confidence 35899999999999999999999999999999987532 3445567899999999999998654 222 22223333332
Q ss_pred CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623 138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI 216 (506)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV 216 (506)
........+.. ...+.+..+.+.|.+.+ +++++++++ |+++++++++ |++..++|+ +++||+||
T Consensus 83 ~g~~~~~~~~~-------~~~~~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~---v~v~~~~g~--~~~ad~vI 147 (386)
T PRK07236 83 DGRVVQRRPMP-------QTQTSWNVLYRALRAAF---PAERYHLGETLVGFEQDGDR---VTARFADGR--RETADLLV 147 (386)
T ss_pred CCCEeeccCCC-------ccccCHHHHHHHHHHhC---CCcEEEcCCEEEEEEecCCe---EEEEECCCC--EEEeCEEE
Confidence 22111111110 11245667777777654 456788885 9999887764 556667786 46799999
Q ss_pred eecCCcccchhhccCCCCCCccc---eeeEEEeccCCCC------CCeeEEEecCCCcEEEEecCCC---------eEEE
Q 010623 217 VCDGCFSNLRRSLCNPKVDVPSC---FVGLVLENCNLPF------ENHGHVVLADPSPILFYPISSN---------EVRC 278 (506)
Q Consensus 217 ~AdG~~S~vR~~l~~~~~~~~~~---~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~p~~~~---------~~~~ 278 (506)
+|||.+|.+|+++.......... +.+++. ...++. ......+.++++.++.||+.+. ..+|
T Consensus 148 gADG~~S~vR~~l~~~~~~~~~g~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (386)
T PRK07236 148 GADGGRSTVRAQLLPDVRPTYAGYVAWRGLVD-EAALPPEARAALRDRFTFQLGPGSHILGYPVPGEDGSTEPGKRRYNW 226 (386)
T ss_pred ECCCCCchHHHHhCCCCCCCcCCeEEEEEecc-hHHcCchhhhhcccceEEEEcCCceEEEEECCCCCCCcCCCCcEEEE
Confidence 99999999999984322111111 122221 111221 1122344566677888887642 2446
Q ss_pred EEEecCCCC---C-----------------CCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCC
Q 010623 279 LVDIPGQKV---P-----------------SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYP 338 (506)
Q Consensus 279 ~~~~~~~~~---~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (506)
.+..+.+.. . ....++..+.+.+.....+++.+.+.+.... ....+++.....++|.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 303 (386)
T PRK07236 227 VWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPVFAELVEATA---QPFVQAIFDLEVPRMA 303 (386)
T ss_pred EEEecCCCccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHHHHHHHhhCc---CchhhhhhcccCcccc
Confidence 655442210 0 0012223334433322334444444332221 1222344444567899
Q ss_pred CCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCC
Q 010623 339 TPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSAS 418 (506)
Q Consensus 339 ~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~ 418 (506)
.|||+|+|||||.|+|+.|||+|+||+||..|++.|.... .+++++|+.|+++|++++..++..++.+...+...
T Consensus 304 ~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~-----~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~ 378 (386)
T PRK07236 304 FGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAA-----GDIDAALAAWEAERLAVGAAIVARGRRLGARLQAQ 378 (386)
T ss_pred cCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcc-----cchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998642 23678999999999999999999998877766543
No 45
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=100.00 E-value=2.8e-36 Score=314.27 Aligned_cols=347 Identities=16% Similarity=0.132 Sum_probs=221.3
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC-CCcc---cccccccchHHHHHHhCch--hHHhhcccceec
Q 010623 57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE-PDRI---VGELLQPGGYLKLIELGLE--DCVEQIDAQRVF 130 (506)
Q Consensus 57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~-~~~~---~g~~l~~~~~~~l~~~g~~--~~~~~~~~~~~~ 130 (506)
+.+..+|+||||||+||++|+.|+++|++|+|+||++.. .... .+..++++++++|+++|++ +.+.+.......
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~ 157 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGD 157 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccc
Confidence 456799999999999999999999999999999998632 1111 3467999999999999863 444443322111
Q ss_pred ceE-EEE--CCceeeeecCCcC---CCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeC
Q 010623 131 GYA-LFK--DGNRTQISYPLEK---FHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTK 203 (506)
Q Consensus 131 ~~~-~~~--~~~~~~~~~~~~~---~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~ 203 (506)
... ..+ .+.. ...++... ....+..+.++|..|.+.|.+.+.. ..++++ +|+++++++++ |++.+.
T Consensus 158 ~i~~~~d~~~G~~-~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~---~~i~~g~~V~~I~~~~d~---VtV~~~ 230 (668)
T PLN02927 158 RINGLVDGISGSW-YVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGE---DVIRNESNVVDFEDSGDK---VTVVLE 230 (668)
T ss_pred eeeeeeecCCCce-EeeccccccccccCCCeEEEEeHHHHHHHHHhhCCC---CEEEcCCEEEEEEEeCCE---EEEEEC
Confidence 111 111 1211 11221100 0111334678999999999876532 235666 59999888774 456667
Q ss_pred CccEEEEEcCeEEeecCCcccchhhccCCCCCCccceeeEEEeccCCCC---CCeeEEEecCCCcEEEEecCCCeEEEEE
Q 010623 204 AGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPF---ENHGHVVLADPSPILFYPISSNEVRCLV 280 (506)
Q Consensus 204 ~G~~~~i~a~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 280 (506)
+|++ +++|+||+|||++|.+|+.+..........+.++.......+. ......+.+...++..++..+++.+|+.
T Consensus 231 dG~t--i~aDlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~~~~~~~~~~G~~~~~v~~~v~~g~~~~~~ 308 (668)
T PLN02927 231 NGQR--YEGDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYA 308 (668)
T ss_pred CCCE--EEcCEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCcccccccceEEEEcCCeEEEEEcCCCCeEEEEE
Confidence 7764 5699999999999999999854332221122222111111111 1112344566667777788777666655
Q ss_pred EecCCCCCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCcc-CCCCCCCCcEEEEccCCCCCCCCcchh
Q 010623 281 DIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSM-PAAPYPTPGALLMGDAFNMRHPLTGGG 359 (506)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~rv~LvGDAAh~~~P~~GqG 359 (506)
..+.........+...+.+.+.+. .+.+.+.+.+. ..+...+..+++... +..+|..|||+|+|||||.|+|+.|||
T Consensus 309 f~~~p~~~~~~~~~~~e~L~~~f~-~w~~~v~elI~-~t~~~~i~~~~iyd~~p~~~W~~grVvLiGDAAH~~~P~~GqG 386 (668)
T PLN02927 309 FHEEPAGGADAPNGMKKRLFEIFD-GWCDNVLDLLH-ATEEDAILRRDIYDRSPGFTWGKGRVTLLGDSIHAMQPNMGQG 386 (668)
T ss_pred EEECCccccccchhHHHHHHHHhc-cCCHHHHHHHH-hCccccceeeeEEeccCCCccccCcEEEEcCccCCCCCccccc
Confidence 433211111123345555555443 45556555443 223333444444433 335799999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhcCC----CCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 010623 360 MTVALSDIVILRNLLRHLSN----LNDAPALCNYLESFYTLRKPVASTINTLAGALYQV 414 (506)
Q Consensus 360 ~n~ai~Da~~La~~L~~~~~----~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~ 414 (506)
+|+||+||..|++.|..... .+.+..++++|+.|+++|++++..++..++.....
T Consensus 387 ~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~rv~~i~~~ar~a~~~ 445 (668)
T PLN02927 387 GCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRLRVAIIHAMARMAAIM 445 (668)
T ss_pred hHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999986521 11234578999999999999999998876654333
No 46
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=100.00 E-value=5.7e-34 Score=271.55 Aligned_cols=305 Identities=19% Similarity=0.243 Sum_probs=176.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecce-EEEE-C
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGY-ALFK-D 137 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~~~~-~ 137 (506)
+.+|+|||||++||++|++|+|.|++|+|+|++..+...+.+..+.-+++++|+.+|+.+.+.+... +..+. .... .
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e~i~~~gi-p~~~~v~~~~~s 80 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKEQIREQGI-PLGGRVLIHGDS 80 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHcccHHHHHHhcC-cccceeeeecCC
Confidence 3689999999999999999999999999999987776666666777779999999999988887543 33333 2222 2
Q ss_pred Cc-eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-----eEEEEEeeCCeEEEEEEEeCCccEEEEE
Q 010623 138 GN-RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-----TVTSLLEEKGTIKGVQYKTKAGEELTAY 211 (506)
Q Consensus 138 ~~-~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-----~v~~~~~~~~~v~~v~v~~~~G~~~~i~ 211 (506)
|+ .....++.. ...-..|.|..+.+.+...+...+.+.+... ....++.... ...+...+|. +++
T Consensus 81 g~~~~~~~~~~~----~~~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~~~---~~~v~l~~g~--~~~ 151 (420)
T KOG2614|consen 81 GKEVSRILYGEP----DEYILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETLGK---KLVVHLSDGT--TVK 151 (420)
T ss_pred CCeeEecccCCc----hHHHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeeccc---ccceecCCCc--EEE
Confidence 33 222223211 1112234555555555545544555555532 1222222211 2345567776 467
Q ss_pred cCeEEeecCCcccchhhccCCCC--CCccceeeEEEeccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecC----C
Q 010623 212 APLTIVCDGCFSNLRRSLCNPKV--DVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPG----Q 285 (506)
Q Consensus 212 a~~vV~AdG~~S~vR~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----~ 285 (506)
+|++|+|||++|.||+.++...+ ...+.++|+.+.....+.. ..++...+..+..-|.+.....+++.... .
T Consensus 152 ~dlligCDGa~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~~--~~vf~~~~~~~~~~~~~~~~~~~y~~~~k~~t~t 229 (420)
T KOG2614|consen 152 GDLLIGCDGAYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPFG--KKVFAIYGNGLHSWPRPGFHLIAYWFLDKSLTST 229 (420)
T ss_pred eeEEEEcCchHHHHHHHhcccCCcceeEEEEeeeeeccCCCCcc--cceecccCCeEEEcccCCceEEEEEeecCCcccc
Confidence 99999999999999999987533 2334556665443333331 22233333333333333333233332210 0
Q ss_pred CCCCC-CchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCcc-----CCCCCCCCcEEEEccCCCCCCCCcchh
Q 010623 286 KVPSI-SNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSM-----PAAPYPTPGALLMGDAFNMRHPLTGGG 359 (506)
Q Consensus 286 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~rv~LvGDAAh~~~P~~GqG 359 (506)
..+.. .++.......+. ...+++.+.+.+ +.++...+...++..+ ...+...++|+|+|||||+|.|+.|||
T Consensus 230 ~~~~~~e~~~l~~~~~~v-~~~~~en~~d~i-~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaHaM~Pf~GQG 307 (420)
T KOG2614|consen 230 DFAPFDEPEKLKKTSLEV-VDFFPENFPDII-ELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAMTPFLGQG 307 (420)
T ss_pred cccCcCCHHHHhhhHHHH-HHHhHHhHHHHH-HhcChHHhhhchhhhcCCcCeeeeccCCCeEEEecccccccCCccccc
Confidence 01111 122222221111 112333333222 2222222332222222 223345568999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhcC
Q 010623 360 MTVALSDIVILRNLLRHLS 378 (506)
Q Consensus 360 ~n~ai~Da~~La~~L~~~~ 378 (506)
+|+|++|+..|+++|+++.
T Consensus 308 ~n~a~ED~~VLa~~L~~~~ 326 (420)
T KOG2614|consen 308 GNCAFEDCVVLAECLDEAI 326 (420)
T ss_pred ccchHHHHHHHHHHHHHhc
Confidence 9999999999999999864
No 47
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=100.00 E-value=4.2e-32 Score=276.74 Aligned_cols=345 Identities=18% Similarity=0.154 Sum_probs=217.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD 137 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 137 (506)
.+++||+||||||+|+++|+.|+++|++|+|+||.+. ....+|..++. +.++++|+.+.+.. ....++.++..
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~-~~k~cgg~i~~---~~l~~lgl~~~~~~---~~i~~~~~~~p 109 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD-NAKPCGGAIPL---CMVGEFDLPLDIID---RKVTKMKMISP 109 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC-CCCCccccccH---hHHhhhcCcHHHHH---HHhhhheEecC
Confidence 3579999999999999999999999999999999853 44567877753 56777888765543 23334444432
Q ss_pred CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeC--CeEEEEEEEeC-----CccEEEE
Q 010623 138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEK--GTIKGVQYKTK-----AGEELTA 210 (506)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~--~~v~~v~v~~~-----~G~~~~i 210 (506)
... ...++. ..........++|..|++.|.+.+.+. |++++.++++++..++ +....|++... +|+..++
T Consensus 110 ~~~-~v~~~~-~~~~~~~~~~v~R~~~d~~L~~~A~~~-Ga~~~~~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v 186 (450)
T PLN00093 110 SNV-AVDIGK-TLKPHEYIGMVRREVLDSFLRERAQSN-GATLINGLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTL 186 (450)
T ss_pred Cce-EEEecc-cCCCCCeEEEecHHHHHHHHHHHHHHC-CCEEEeceEEEEEeccCCCCcEEEEEEeccccccCCCccEE
Confidence 221 222221 011112223589999999999999987 7888877887776422 22223444332 1544568
Q ss_pred EcCeEEeecCCcccchhhccCCCCCCccceeeEEEeccCCC------CCCeeEEEec----CCCcEEEEecCCCeEEEEE
Q 010623 211 YAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLP------FENHGHVVLA----DPSPILFYPISSNEVRCLV 280 (506)
Q Consensus 211 ~a~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~ 280 (506)
+||+||+|||.+|.+|+.++.+... ...++... ...+ .++...++++ ++++.|+||..+. .++.+
T Consensus 187 ~a~~VIgADG~~S~vrr~lg~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~WifP~g~~-~~VG~ 261 (450)
T PLN00093 187 EVDAVIGADGANSRVAKDIDAGDYD---YAIAFQER-IKIPDDKMEYYEDLAEMYVGDDVSPDFYGWVFPKCDH-VAVGT 261 (450)
T ss_pred EeCEEEEcCCcchHHHHHhCCCCcc---eeEEEEEE-EeCChhhccccCCeEEEEeCCCCCCCceEEEEECCCc-EEEEE
Confidence 8999999999999999999875321 11222111 1111 1233455655 3467899999853 45444
Q ss_pred EecCCCCCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhh
Q 010623 281 DIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGM 360 (506)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~ 360 (506)
..... ..+..+..+.+.+.....+. ..+.......++......++..+|++|+|||||.++|++|+|+
T Consensus 262 g~~~~---~~~~~~~~~~l~~~~~~~l~---------~~~~~~~~~~~ip~~~~~~~~~~~vlLvGDAAg~v~P~tGeGI 329 (450)
T PLN00093 262 GTVVN---KPAIKKYQRATRNRAKDKIA---------GGKIIRVEAHPIPEHPRPRRVRGRVALVGDAAGYVTKCSGEGI 329 (450)
T ss_pred EEccC---CCChHHHHHHHHHHhhhhcC---------CCeEEEEEEEEcccccccceeCCCcEEEeccccCCCccccccH
Confidence 32111 11122222233221110000 0000112223333334567788999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 010623 361 TVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQAC 430 (506)
Q Consensus 361 n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~ 430 (506)
+.||.++..+|+.+.+....++.......|+.|++..+.........+..+.++|..+ ++....+.+.+
T Consensus 330 ~~Am~sg~~AAe~i~~~~~~g~~~~s~~~L~~Y~~~~~~~~g~~~~~~~~l~~~~~~~-~~~~~~~~~~~ 398 (450)
T PLN00093 330 YFAAKSGRMCAEAIVEGSENGTRMVDEADLREYLRKWDKKYWPTYKVLDILQKVFYRS-NPAREAFVEMC 398 (450)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHh
Confidence 9999999999999986532211111235689999988887777788888888888764 66555555444
No 48
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=100.00 E-value=3.8e-31 Score=267.64 Aligned_cols=324 Identities=20% Similarity=0.259 Sum_probs=208.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc-
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN- 139 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~- 139 (506)
|||+||||||+|+++|+.|++.|++|+|+|+.. .....++..+++ +.++++++.+.+.. ....+..++....
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~-~~~~~cg~~i~~---~~l~~l~i~~~~~~---~~~~~~~~~~~~~~ 73 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERAL-SNIKPCGGAIPP---CLIEEFDIPDSLID---RRVTQMRMISPSRV 73 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCC-CCcCcCcCCcCH---hhhhhcCCchHHHh---hhcceeEEEcCCCc
Confidence 699999999999999999999999999999983 334567777775 45677888765543 2344555554322
Q ss_pred eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEe----CCccEEEEEcCeE
Q 010623 140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKT----KAGEELTAYAPLT 215 (506)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~----~~G~~~~i~a~~v 215 (506)
......+. .......++|..|++.|.+.+.+. +++++.++|+++..+++.+. +++.+ .+|+..+++||+|
T Consensus 74 ~~~~~~~~----~~~~~~~~~r~~fd~~L~~~a~~~-G~~v~~~~v~~v~~~~~~~~-v~~~~~~~~~~~~~~~i~a~~V 147 (388)
T TIGR02023 74 PIKVTIPS----EDGYVGMVRREVFDSYLRERAQKA-GAELIHGLFLKLERDRDGVT-LTYRTPKKGAGGEKGSVEADVV 147 (388)
T ss_pred eeeeccCC----CCCceEeeeHHHHHHHHHHHHHhC-CCEEEeeEEEEEEEcCCeEE-EEEEeccccCCCcceEEEeCEE
Confidence 21111110 111122589999999999999887 77887778999887776543 55543 2344457889999
Q ss_pred EeecCCcccchhhccCCCCCCccceeeEE--Eecc--CC-CCCCeeEEEec----CCCcEEEEecCCCeEEEEEEecCCC
Q 010623 216 IVCDGCFSNLRRSLCNPKVDVPSCFVGLV--LENC--NL-PFENHGHVVLA----DPSPILFYPISSNEVRCLVDIPGQK 286 (506)
Q Consensus 216 V~AdG~~S~vR~~l~~~~~~~~~~~~~~~--~~~~--~~-~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~ 286 (506)
|+|||.+|.+|+.++.+.... ...++. +... .. ..++...++++ ++++.|++|.++. .++......
T Consensus 148 I~AdG~~S~v~r~lg~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~~-~~vg~~~~~-- 222 (388)
T TIGR02023 148 IGADGANSPVAKELGLPKNLP--RVIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGDH-IAVGTGTGT-- 222 (388)
T ss_pred EECCCCCcHHHHHcCCCCCCc--EEEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCCe-eEEeEEECC--
Confidence 999999999999998753211 111221 1101 01 12233444543 4468899999753 444443211
Q ss_pred CCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHH
Q 010623 287 VPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSD 366 (506)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~D 366 (506)
...+.++..+.+.+... +... +... ......|. ....+|..+|++++|||||.++|++|+|++.||++
T Consensus 223 -~~~~~~~~~~~l~~~~~--~~~~------~~~~-~~~~~ip~--~~~~~~~~~~v~lvGDAAg~v~P~tG~GI~~A~~s 290 (388)
T TIGR02023 223 -HGFDAKQLQANLRRRAG--LDGG------QTIR-REAAPIPM--KPRPRWDFGRAMLVGDAAGLVTPASGEGIYFAMKS 290 (388)
T ss_pred -CCCCHHHHHHHHHHhhC--CCCc------eEee-eeeEeccc--cccccccCCCEEEEeccccCcCCcccccHHHHHHH
Confidence 11122333333333211 1000 0000 01112233 34567888999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCC
Q 010623 367 IVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSAS 418 (506)
Q Consensus 367 a~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~ 418 (506)
|..+++.+.+....++ .+.|+.|+++.+..........+.+..++..+
T Consensus 291 g~~aa~~i~~~l~~~~----~~~L~~Y~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (388)
T TIGR02023 291 GQMAAQAIAEYLQNGD----ATDLRHYERKFMKLYGTTFRVLRVLQMVYYRS 338 (388)
T ss_pred HHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999987643222 46799999999888766666677776776544
No 49
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=100.00 E-value=8.5e-31 Score=264.93 Aligned_cols=346 Identities=17% Similarity=0.170 Sum_probs=211.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
+||+||||||+|+++|+.|+++|++|+|+||.+.. ...|+..+.. +.++++|+.+.+.. ....+..++.....
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~-~~~cg~~i~~---~~l~~~g~~~~~~~---~~i~~~~~~~p~~~ 73 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDN-AKPCGGAIPL---CMVDEFALPRDIID---RRVTKMKMISPSNI 73 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCC-CCCccccccH---hhHhhccCchhHHH---hhhceeEEecCCce
Confidence 58999999999999999999999999999998543 4557776653 56778888755433 12333444433221
Q ss_pred eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEe--eCCeEEEEEEEeCC-----ccEEEEEcC
Q 010623 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLE--EKGTIKGVQYKTKA-----GEELTAYAP 213 (506)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~--~~~~v~~v~v~~~~-----G~~~~i~a~ 213 (506)
...+... .........++|..|++.|.+.+.+. |++++.++++++.. +.+...+|++...+ |+..+++|+
T Consensus 74 -~~~~~~~-~~~~~~~~~v~R~~~d~~L~~~a~~~-G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~ 150 (398)
T TIGR02028 74 -AVDIGRT-LKEHEYIGMLRREVLDSFLRRRAADA-GATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVD 150 (398)
T ss_pred -EEEeccC-CCCCCceeeeeHHHHHHHHHHHHHHC-CcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEeC
Confidence 1222110 01111223589999999999999987 78888888777653 22333345554333 555578999
Q ss_pred eEEeecCCcccchhhccCCCCCCccceeeEEE-eccCCC-CCCeeEEEec----CCCcEEEEecCCCeEEEEEEecCCCC
Q 010623 214 LTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVL-ENCNLP-FENHGHVVLA----DPSPILFYPISSNEVRCLVDIPGQKV 287 (506)
Q Consensus 214 ~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~ 287 (506)
+||+|||.+|.+|+.++.+.......+...+. ...... .++...++++ ++++.|+||.++. .++.+....
T Consensus 151 ~VIgADG~~S~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~~-~~VG~g~~~--- 226 (398)
T TIGR02028 151 AVIGADGANSRVAKEIDAGDYSYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCDH-VAVGTGTVA--- 226 (398)
T ss_pred EEEECCCcchHHHHHhCCCCcceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCCe-EEEEEEeCC---
Confidence 99999999999999998653211111111110 000011 1233455654 4468999999853 444443211
Q ss_pred CCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHH
Q 010623 288 PSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDI 367 (506)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da 367 (506)
.....+++.+.+... ...... . .....+...++.....+++..+|++|+|||||.++|++|+|++.||+++
T Consensus 227 ~~~~~~~~~~~l~~~----~~~~~~----~-~~~~~~~~~~ip~~~~~~~~~~~~llvGDAAg~v~P~tGeGI~~A~~sg 297 (398)
T TIGR02028 227 AKPEIKRLQSGIRAR----AAGKVA----G-GRIIRVEAHPIPEHPRPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSG 297 (398)
T ss_pred CCccHHHHHHhhhhh----hhhccC----C-CcEEEEEEEeccccccccEECCCEEEEEcCCCCCCcccccchHHHHHHH
Confidence 111112222222111 000000 0 0001122222222234567789999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 010623 368 VILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQAC 430 (506)
Q Consensus 368 ~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~ 430 (506)
..+|+.+.+....++.......|+.|++..+.........+..+.+++..+ +.....+.+.+
T Consensus 298 ~~aa~~i~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 359 (398)
T TIGR02028 298 RMCAEAIVEESRLGGAVTEEGDLAGYLRRWDKEYRPTYRVLDLLQRVFYRS-NAGREAFVEMC 359 (398)
T ss_pred HHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHh
Confidence 999999986532222112246799999988877777777888888888763 55544444443
No 50
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.97 E-value=7.6e-30 Score=248.92 Aligned_cols=285 Identities=25% Similarity=0.252 Sum_probs=180.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC-Cc
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD-GN 139 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~-~~ 139 (506)
+||+||||||+|+++|+.|+++|++|+|+||.+......++..+.+++.+.+...+.. .. .......++.. +.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-----~~~~~~~~~~~~~~ 74 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLEL-IV-----NLVRGARFFSPNGD 74 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchh-hh-----hheeeEEEEcCCCc
Confidence 6999999999999999999999999999999987666667777888877776554431 11 11122222222 22
Q ss_pred eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623 140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC 218 (506)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A 218 (506)
.. ..+. .....+.++|..+.+.|.+.+.+. +++++.+ +++++..+++++. +.+ .++. .+++||+||+|
T Consensus 75 ~~--~~~~----~~~~~~~i~r~~l~~~l~~~~~~~-gv~~~~~~~v~~~~~~~~~~~-~~~--~~~~-~~~~a~~vv~a 143 (295)
T TIGR02032 75 SV--EIPI----ETELAYVIDRDAFDEQLAERAQEA-GAELRLGTTVLDVEIHDDRVV-VIV--RGGE-GTVTAKIVIGA 143 (295)
T ss_pred EE--Eecc----CCCcEEEEEHHHHHHHHHHHHHHc-CCEEEeCcEEeeEEEeCCEEE-EEE--cCcc-EEEEeCEEEEC
Confidence 21 1111 123446789999999999999887 7888777 5999888777543 333 3332 35789999999
Q ss_pred cCCcccchhhccCCCCCCccceeeEEEe-ccCC--CCCCeeEEEec----CCCcEEEEecCCCeEEEEEEecCCCCCCCC
Q 010623 219 DGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNL--PFENHGHVVLA----DPSPILFYPISSNEVRCLVDIPGQKVPSIS 291 (506)
Q Consensus 219 dG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 291 (506)
||.+|.+|+.++........ ..++... ..+. ..++...+++. ++++.|++|+++++..+.+...... .
T Consensus 144 ~G~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~----~ 218 (295)
T TIGR02032 144 DGSRSIVAKKLGLRKEPREL-GVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSAE----E 218 (295)
T ss_pred CCcchHHHHhcCCCCCCcce-eeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccCC----C
Confidence 99999999988765422221 1222111 1111 12233334433 3578899999998766666544332 1
Q ss_pred chHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCC-ccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHH
Q 010623 292 NGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNR-SMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVIL 370 (506)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~L 370 (506)
..+..+.+.+++. ..+. +. . ........++.. .....++..+||+++|||||.++|++|||+|+||+||..+
T Consensus 219 ~~~~~~~~~~~~~-~~~~-l~----~-~~~~~~~~~~~~~~~~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~a 291 (295)
T TIGR02032 219 GEDLKKYLKDFLA-RRPE-LK----D-AETVEVIGAPIPIGRPDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVA 291 (295)
T ss_pred CCCHHHHHHHHHH-hCcc-cc----c-CcEEeeeceeeccCCCCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHH
Confidence 2233334443321 1111 10 0 000111111111 1245677889999999999999999999999999999999
Q ss_pred HHHh
Q 010623 371 RNLL 374 (506)
Q Consensus 371 a~~L 374 (506)
|+.|
T Consensus 292 a~~~ 295 (295)
T TIGR02032 292 AEVI 295 (295)
T ss_pred HhhC
Confidence 9864
No 51
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.97 E-value=3.4e-30 Score=279.57 Aligned_cols=323 Identities=18% Similarity=0.164 Sum_probs=203.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCCCcccccccccchHHHHHHhC--chhHHhhcccceecceEEEE
Q 010623 61 ADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLSEPDRIVGELLQPGGYLKLIELG--LEDCVEQIDAQRVFGYALFK 136 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g--~~~~~~~~~~~~~~~~~~~~ 136 (506)
.+|+||||||+||++|+.|+++ |++|+|+||++.....+.|..+++++++.|+.++ +.+.+... ........++.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~-~~~~~~~~~~~ 79 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDA-FNHWDDIDVHF 79 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHh-cccCCceEEEE
Confidence 3799999999999999999998 8999999999866656677788999988888776 22222221 11112223333
Q ss_pred CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeE
Q 010623 137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLT 215 (506)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~v 215 (506)
.+... .. .......++|.+|.+.|.+.+.+. ++++++++ ++++.+ ...++|+|
T Consensus 80 ~g~~~-~~-------~g~~~~~i~R~~L~~~L~e~a~~~-GV~i~~g~~v~~i~~-----------------~~~~~D~V 133 (765)
T PRK08255 80 KGRRI-RS-------GGHGFAGIGRKRLLNILQARCEEL-GVKLVFETEVPDDQA-----------------LAADADLV 133 (765)
T ss_pred CCEEE-EE-------CCeeEecCCHHHHHHHHHHHHHHc-CCEEEeCCccCchhh-----------------hhcCCCEE
Confidence 33211 10 011123578999999999999988 78888875 554321 11359999
Q ss_pred EeecCCcccchhhccCCCCCC-ccceeeEEEeccCCCCCCeeEE-EecCCCc--EEEEecCCCeEEEEEEecCC-----C
Q 010623 216 IVCDGCFSNLRRSLCNPKVDV-PSCFVGLVLENCNLPFENHGHV-VLADPSP--ILFYPISSNEVRCLVDIPGQ-----K 286 (506)
Q Consensus 216 V~AdG~~S~vR~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~p~~~~~~~~~~~~~~~-----~ 286 (506)
|+|||.+|.+|+++....... ......+............... .....++ ...||++++...+++..+.+ .
T Consensus 134 VgADG~~S~vR~~~~~~~~~~~~~~~~~~~w~g~~~~~~~~~~~~~~~~~g~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 213 (765)
T PRK08255 134 IASDGLNSRIRTRYADTFQPDIDTRRCRFVWLGTHKVFDAFTFAFEETEHGWFQAHAYRFDDDTSTFIVETPEEVWRAAG 213 (765)
T ss_pred EEcCCCCHHHHHHHHhhcCCceecCCCceEEecCCCcccceeEEEEecCCceEEEEEeeeCCCCcEEEEEcCHHHHHhcC
Confidence 999999999999875321110 1111111111111111111111 1112232 34578887776777766432 1
Q ss_pred CCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCc----EEEEccCCCCCCCCcchhhHH
Q 010623 287 VPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPG----ALLMGDAFNMRHPLTGGGMTV 362 (506)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r----v~LvGDAAh~~~P~~GqG~n~ 362 (506)
.+..+.++..+.+.+.+.+..+.. ..+....................+|..+| |+|+|||||.++|+.|||+|+
T Consensus 214 ~~~~~~~~~~~~l~~~f~~~~~~~--~li~~~~~~~~~~w~~~~~~~~~~w~~gr~~~~v~liGDAAH~~~P~~GqG~~~ 291 (765)
T PRK08255 214 LDEMSQEESIAFCEKLFADYLDGH--PLMSNASHLRGSAWINFPRVVCERWVHWNRRVPVVLMGDAAHTAHFSIGSGTKL 291 (765)
T ss_pred CccCCHHHHHHHHHHHhHHhcCCC--cccccccccccceeeecceeccCCCccCCCcccEEEEEcCcccCCCCcchhHHH
Confidence 223345555555555444332211 11111100001111222334567899999 999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcC
Q 010623 363 ALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSA 417 (506)
Q Consensus 363 ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~ 417 (506)
||+||..|++.|.... .+++++|+.|+++|++++..++..|+....+|..
T Consensus 292 aieDa~~La~~L~~~~-----~~~~~al~~ye~~R~~r~~~~~~~s~~~~~~~~~ 341 (765)
T PRK08255 292 ALEDAIELARCLHEHP-----GDLPAALAAYEEERRVEVLRIQNAARNSTEWFEN 341 (765)
T ss_pred HHHHHHHHHHHHHHcc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHhCceeee
Confidence 9999999999998642 2578999999999999999999999876666544
No 52
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.97 E-value=1.9e-30 Score=245.21 Aligned_cols=371 Identities=18% Similarity=0.161 Sum_probs=265.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCCC--C-------cccccccccchHHHHHHhCchhHHhhc
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKD----GRRVHVIERDLSEP--D-------RIVGELLQPGGYLKLIELGLEDCVEQI 124 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~----G~~v~vvE~~~~~~--~-------~~~g~~l~~~~~~~l~~~g~~~~~~~~ 124 (506)
+..+||+||||||+|+++|..|... -.+|.|+|....+. . ..+-..++++++..++.+|.|+.+...
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~ 113 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHD 113 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhh
Confidence 3479999999999999999999864 36999999874321 1 112345789999999999999999887
Q ss_pred ccceecceEEEECCceeeeecCCcCCCCCcccccccchHHHHHHH--HHHHcCCCEEEEece-EEEEEee-----CCeEE
Q 010623 125 DAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLR--EKAASLPNVRLEQGT-VTSLLEE-----KGTIK 196 (506)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~--~~~~~~~~v~i~~~~-v~~~~~~-----~~~v~ 196 (506)
...+..++..|+.-....+.+..+... ...++.+....+...|+ +...+..++++.+.+ +.++... ++...
T Consensus 114 R~~~~~~~~v~Ds~s~a~I~~~~d~~~-~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~ 192 (481)
T KOG3855|consen 114 RYQKFSRMLVWDSCSAALILFDHDNVG-IDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGM 192 (481)
T ss_pred ccccccceeeecccchhhhhhcccccc-ccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcc
Confidence 777777777777655555555533332 23456777777887887 455556688888874 7766542 12222
Q ss_pred EEEEEeCCccEEEEEcCeEEeecCCcccchhhccCCCCCCccceeeEEEe---ccCCCCCCeeEEEecCCCcEEEEecCC
Q 010623 197 GVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE---NCNLPFENHGHVVLADPSPILFYPISS 273 (506)
Q Consensus 197 ~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~ 273 (506)
...+...||.. +.+|++|+|||.+|.+|+..+++..++.+...+++.. .++......++..|.+.|++.+.|+++
T Consensus 193 ~~~i~l~dg~~--~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP~GpiAllpl~d 270 (481)
T KOG3855|consen 193 WFHITLTDGIN--FATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGPIALLPLSD 270 (481)
T ss_pred eEEEEeccCce--eeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCCCCceeeccccc
Confidence 35666788874 5699999999999999999999988887777776654 334555667788889999999999999
Q ss_pred CeEEEEEEecCCC---CCCCCchHHHHHHHHhcCCCCCh-----hhh----------HHHHhhhc---------------
Q 010623 274 NEVRCLVDIPGQK---VPSISNGEMANYLKTVVAPQIPR-----EIF----------HSFVAAVD--------------- 320 (506)
Q Consensus 274 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~----------~~~~~~~~--------------- 320 (506)
+-....|...++. .....++...+.+...+.-+-+. +.. ..+.....
T Consensus 271 ~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~~~q~pp~V~~v~ 350 (481)
T KOG3855|consen 271 TLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLANQQYPPSVFEVG 350 (481)
T ss_pred ccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCcccccccCCeEEEec
Confidence 8878888665332 22344555555555443211110 000 01111100
Q ss_pred CCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcch
Q 010623 321 GGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPV 400 (506)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~ 400 (506)
...-..+|+...+++.|...|+.|+|||||.+||..|||.|++..|+..|...|..+...+-+-...+.|+-|+++|.+.
T Consensus 351 dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS~~~L~~y~~~~~~~ 430 (481)
T KOG3855|consen 351 DKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGSVEHLEPYERERLQH 430 (481)
T ss_pred ccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccccchhhhhHHHHHHhhh
Confidence 01234678888889999999999999999999999999999999999999999987633223333457899999999999
Q ss_pred hHHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 010623 401 ASTINTLAGALYQVFSASPDEARKEMRQACFD 432 (506)
Q Consensus 401 ~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~ 432 (506)
...+....+.+.++|+.+ .+....+|...+.
T Consensus 431 N~~ll~~vdkl~klY~t~-~p~vV~~rt~GL~ 461 (481)
T KOG3855|consen 431 NYVLLGAVDKLHKLYATS-APPVVLLRTFGLQ 461 (481)
T ss_pred cchHHHHHHHHHHHHhcc-CCcEEEEeccchh
Confidence 988888889999999887 5555555554433
No 53
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.97 E-value=6.8e-28 Score=243.99 Aligned_cols=323 Identities=23% Similarity=0.278 Sum_probs=206.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccc-cccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVG-ELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD 137 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g-~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 137 (506)
+++||+||||||||++||+.|++.|++|+|+||...+..+.++ ..+.+..++.+......+ + ...+.+..++..
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~-i----~~~v~~~~~~~~ 76 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE-I----ERKVTGARIYFP 76 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchh-h----heeeeeeEEEec
Confidence 4699999999999999999999999999999999888877665 667766655443222211 1 123344444444
Q ss_pred CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623 138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI 216 (506)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV 216 (506)
+.......+. ..++.++|..|++.|.+.+++. |++++.++ +.++..+++++..++ . .+. .+++|++||
T Consensus 77 ~~~~~~~~~~------~~~y~v~R~~fd~~La~~A~~a-Gae~~~~~~~~~~~~~~~~~~~~~-~--~~~-~e~~a~~vI 145 (396)
T COG0644 77 GEKVAIEVPV------GEGYIVDRAKFDKWLAERAEEA-GAELYPGTRVTGVIREDDGVVVGV-R--AGD-DEVRAKVVI 145 (396)
T ss_pred CCceEEecCC------CceEEEEhHHhhHHHHHHHHHc-CCEEEeceEEEEEEEeCCcEEEEE-E--cCC-EEEEcCEEE
Confidence 3333332221 4578999999999999999998 77888775 999998887554222 2 222 568899999
Q ss_pred eecCCcccchhhccCCCCCCccceeeEEEeccCCCC-CCeeEEE-e----cCCCcEEEEecCCCeEEEEEEecCCCCCCC
Q 010623 217 VCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPF-ENHGHVV-L----ADPSPILFYPISSNEVRCLVDIPGQKVPSI 290 (506)
Q Consensus 217 ~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 290 (506)
+|||.+|.+++.++.. ...+.............|. .....+. + .+.++.|+||..++..++.+...... +..
T Consensus 146 ~AdG~~s~l~~~lg~~-~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~~~~-~~~ 223 (396)
T COG0644 146 DADGVNSALARKLGLK-DRKPEDYAIGVKEVIEVPDDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLDD-PSL 223 (396)
T ss_pred ECCCcchHHHHHhCCC-CCChhheeEEeEEEEecCCCCceEEEEecCCccCCCceEEEEECCCceEEEEEEEecCC-cCC
Confidence 9999999999999987 2222222222222222332 2222222 2 24678999999999888888765443 222
Q ss_pred CchHHHHHHHHhcC-CCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHH
Q 010623 291 SNGEMANYLKTVVA-PQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVI 369 (506)
Q Consensus 291 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~ 369 (506)
... . +.++++.. +.....+.. ....+ ......|.......++..++++++||||..++|++|.|+..||..|..
T Consensus 224 ~~~-~-~~l~~f~~~~~~~~~~~~--~~~~~-~~~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~ 298 (396)
T COG0644 224 SPF-L-ELLERFKEHPAIRKLLLG--GKILE-YAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKL 298 (396)
T ss_pred Cch-H-HHHHHHHhCcccchhccC--CceEE-EeeeecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHHHHHH
Confidence 221 1 33333221 111111100 00000 011233333322223678899999999999999999999999999999
Q ss_pred HHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHHHH
Q 010623 370 LRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAG 409 (506)
Q Consensus 370 La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~ 409 (506)
+|+.+.+....+ .+.|..|++..+...........
T Consensus 299 Aa~~i~~~~~~~-----~~~l~~Y~~~~~~~~~~~~~~~~ 333 (396)
T COG0644 299 AAEAIAEALEGG-----EEALAEYERLLRKSLAREDLKSL 333 (396)
T ss_pred HHHHHHHHHHcC-----hhHHHHHHHHHHHHHHHHHHHHh
Confidence 999998753211 46777788888766554444333
No 54
>PRK11445 putative oxidoreductase; Provisional
Probab=99.97 E-value=1e-28 Score=246.19 Aligned_cols=306 Identities=17% Similarity=0.152 Sum_probs=181.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC----CcccccccccchHHHHHHhCchhHHhhcccceecceEEEE
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP----DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFK 136 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~----~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 136 (506)
+||+||||||+|+++|+.|+++ ++|+|+||.+... ...+|..+++++.+.|+++|++...............
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~--- 77 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVK--- 77 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceee---
Confidence 7999999999999999999999 9999999987542 3458889999999999999986321111100000000
Q ss_pred CCceeeeecCCcC-CCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCe
Q 010623 137 DGNRTQISYPLEK-FHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPL 214 (506)
Q Consensus 137 ~~~~~~~~~~~~~-~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~ 214 (506)
...+.... .......+.++|..|.+.|.+.+ +. ++++++++ ++++.++++++. +++ .++|+..+++||+
T Consensus 78 -----~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~-gv~v~~~~~v~~i~~~~~~~~-v~~-~~~g~~~~i~a~~ 148 (351)
T PRK11445 78 -----TIDLANSLTRNYQRSYINIDRHKFDLWLKSLI-PA-SVEVYHNSLCRKIWREDDGYH-VIF-RADGWEQHITARY 148 (351)
T ss_pred -----EecccccchhhcCCCcccccHHHHHHHHHHHH-hc-CCEEEcCCEEEEEEEcCCEEE-EEE-ecCCcEEEEEeCE
Confidence 01111000 00111234689999999998854 33 68888875 888887776433 433 2466655688999
Q ss_pred EEeecCCcccchhhccCCCCCCccceeeEEEe-ccCCCCCCeeEEEec---CCCcEEEEecCCCeEEEEEEecCCCCCCC
Q 010623 215 TIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLA---DPSPILFYPISSNEVRCLVDIPGQKVPSI 290 (506)
Q Consensus 215 vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 290 (506)
||+|||.+|.+|++++..... ..+.++..+ ....+.+. ...+++ .+++.|.+|..+.. ......+......
T Consensus 149 vV~AdG~~S~vr~~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~W~~p~~~~~-~~g~~~~~~~~~~- 223 (351)
T PRK11445 149 LVGADGANSMVRRHLYPDHQI--RKYVAIQQWFAEKHPVPF-YSCIFDNEITDCYSWSISKDGYF-IFGGAYPMKDGRE- 223 (351)
T ss_pred EEECCCCCcHHhHHhcCCCch--hhEEEEEEEecCCCCCCC-cceEEeccCCCceEEEeCCCCcE-EecccccccchHH-
Confidence 999999999999998754221 123333222 11111111 112222 23567778875532 2211112110000
Q ss_pred CchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCC--CCCCCcEEEEccCCCCCCCCcchhhHHHHHHHH
Q 010623 291 SNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAA--PYPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 368 (506)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~ 368 (506)
..+.+.+.+.+ ....+.+.+. .. ...+....... .+.++|++|||||||.++|++|||+|.|++||.
T Consensus 224 ~~~~l~~~l~~-~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~ 292 (351)
T PRK11445 224 RFETLKEKLSA-FGFQFGKPVK--------TE--ACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYALDSAR 292 (351)
T ss_pred HHHHHHHHHHh-cccccccccc--------cc--cccccCcccccccccCCCCEEEEEcccCccCCccCccHHHHHHhHH
Confidence 00111112211 1111111110 00 00111111112 234589999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHH
Q 010623 369 ILRNLLRHLSNLNDAPALCNYLESFYTLRKPVAST 403 (506)
Q Consensus 369 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~ 403 (506)
.|++.|.+.. ...++.|++..+...-.
T Consensus 293 ~la~~l~~~~--------~~~~~~y~~~~~~~~~~ 319 (351)
T PRK11445 293 ILSEVLNKQP--------EKLNTAYWRKTRKLRLK 319 (351)
T ss_pred HHHHHHHhcc--------cchHHHHHHHHHHHHHH
Confidence 9999997532 35788999888776533
No 55
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.95 E-value=1.3e-24 Score=220.35 Aligned_cols=306 Identities=20% Similarity=0.171 Sum_probs=180.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecc-eEEEECCce
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFG-YALFKDGNR 140 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~~~~~~~ 140 (506)
||+||||||+|+++|+.|++.|++|+|+|+.+.... .....++.. .++++++.+.+.. ...+ ..+...+..
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 72 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG-NHTYGVWDD---DLSDLGLADCVEH----VWPDVYEYRFPKQP 72 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC-CccccccHh---hhhhhchhhHHhh----cCCCceEEecCCcc
Confidence 899999999999999999999999999999864321 111222222 2444554332221 1112 111111111
Q ss_pred eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecC
Q 010623 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDG 220 (506)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG 220 (506)
.. .......+++..|.+.|.+.+.+. +++++.++|+++..+++.. +.+...+|+ +++|++||+|||
T Consensus 73 ~~---------~~~~~~~i~~~~l~~~l~~~~~~~-gv~~~~~~v~~i~~~~~~~--~~v~~~~g~--~~~a~~VI~A~G 138 (388)
T TIGR01790 73 RK---------LGTAYGSVDSTRLHEELLQKCPEG-GVLWLERKAIHAEADGVAL--STVYCAGGQ--RIQARLVIDARG 138 (388)
T ss_pred hh---------cCCceeEEcHHHHHHHHHHHHHhc-CcEEEccEEEEEEecCCce--eEEEeCCCC--EEEeCEEEECCC
Confidence 00 011223588999999999999887 6788777888887763432 344456675 467999999999
Q ss_pred CcccchhhccCCCCCCccceeeEEEeccCCCCCCeeEEEec----C--------CC--cEEEEecCCCeEEEEEEecCCC
Q 010623 221 CFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLA----D--------PS--PILFYPISSNEVRCLVDIPGQK 286 (506)
Q Consensus 221 ~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--------~~--~~~~~p~~~~~~~~~~~~~~~~ 286 (506)
.+|.+++........ .....|+...-...+.+....++++ + .+ ++|++|.++++..+...... .
T Consensus 139 ~~s~~~~~~~~~~~~-~q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~~~~-~ 216 (388)
T TIGR01790 139 FGPLVQYVRFPLNVG-FQVAYGVEARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEETSLA-D 216 (388)
T ss_pred CchhcccccCCCCce-EEEEEEEEEEEcCCCCCCCceEEEeccccccccccccCCCCceEEEeecCCCeEEEEecccc-C
Confidence 999775433221111 1234454443211111111111111 1 12 67889998876543321111 1
Q ss_pred CCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHH
Q 010623 287 VPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSD 366 (506)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~D 366 (506)
.+..+.++.++.+.+.+... ..... .+.......+|+.... ++..+|++++|||||.++|.+|+|++.++++
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~-g~~~~-----~i~~~~~~~iP~~~~~--~~~~~rv~liGdAAg~~~P~tG~Gi~~al~~ 288 (388)
T TIGR01790 217 RPALPRDRLRQRILARLNAQ-GWQIK-----TIEEEEWGALPVGLPG--PFLPQRVAAFGAAAGMVHPTTGYSVARALSD 288 (388)
T ss_pred CCCCCHHHHHHHHHHHHHHc-CCeee-----EEEeeeeEEEecccCC--CccCCCeeeeechhcCcCCcccccHHHHHHH
Confidence 12334556666665543211 10000 0111123344554332 2367899999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHH
Q 010623 367 IVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVAST 403 (506)
Q Consensus 367 a~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~ 403 (506)
|..+++.|.+....+ ...+++.|++..+++..+
T Consensus 289 a~~la~~l~~~~~~~----~~~~~~~~~~~~~~~~~~ 321 (388)
T TIGR01790 289 APGLAAAIAQALCQS----SELATAAWDGLWPTERRR 321 (388)
T ss_pred HHHHHHHHHHHhccC----HHHHHHHHHHhchHHHHH
Confidence 999999998654222 357888888766665554
No 56
>PRK10015 oxidoreductase; Provisional
Probab=99.94 E-value=1.3e-24 Score=221.58 Aligned_cols=341 Identities=19% Similarity=0.188 Sum_probs=190.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc-cccccccchHHHHHHhCchh--HHhhcccceecceEEEE
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI-VGELLQPGGYLKLIELGLED--CVEQIDAQRVFGYALFK 136 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~-~g~~l~~~~~~~l~~~g~~~--~~~~~~~~~~~~~~~~~ 136 (506)
++||+||||||+|+++|+.|+++|++|+|+||.+.+..+. +|..+.....+.+.. ++.. .+.. ......+.+..
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~-~~~~~~~i~~--~~~~~~~~~~~ 81 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIP-GFAASAPVER--KVTREKISFLT 81 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcc-cccccCCccc--cccceeEEEEe
Confidence 5999999999999999999999999999999987665443 344444444333210 2211 0111 00111122223
Q ss_pred CCceeeeecCCcCCCC-CcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCe
Q 010623 137 DGNRTQISYPLEKFHS-DVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPL 214 (506)
Q Consensus 137 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~ 214 (506)
.+......+....... ...++.+.|..|++.|.+.+++. +++++.+ +|+++..+++++.++. . ++. +++|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~-Gv~i~~~~~V~~i~~~~~~v~~v~--~-~~~--~i~A~~ 155 (429)
T PRK10015 82 EESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQA-GAQFIPGVRVDALVREGNKVTGVQ--A-GDD--ILEANV 155 (429)
T ss_pred CCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHc-CCEEECCcEEEEEEEeCCEEEEEE--e-CCe--EEECCE
Confidence 3323333333222111 12367889999999999999887 7888877 5999887777655443 2 232 478999
Q ss_pred EEeecCCcccchhhccCCCCCCcc-ceeeEEEeccCCC------------CCCeeEEEecC--CC---cEEEEecCCCeE
Q 010623 215 TIVCDGCFSNLRRSLCNPKVDVPS-CFVGLVLENCNLP------------FENHGHVVLAD--PS---PILFYPISSNEV 276 (506)
Q Consensus 215 vV~AdG~~S~vR~~l~~~~~~~~~-~~~~~~~~~~~~~------------~~~~~~~~~~~--~~---~~~~~p~~~~~~ 276 (506)
||+|||.+|.+++.++........ ...++... ...+ .....+++++. ++ ..|+|+-. +..
T Consensus 156 VI~AdG~~s~v~~~lg~~~~~~~~~~~~gvk~~-~~~~~~~i~~~~~~~~~~g~~w~~~g~~~~g~~g~G~~~~~~-d~v 233 (429)
T PRK10015 156 VILADGVNSMLGRSLGMVPASDPHHYAVGVKEV-IGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNK-DSI 233 (429)
T ss_pred EEEccCcchhhhcccCCCcCCCcCeEEEEEEEE-EeCCHHHhhHhhcCCCCCCeEEEecCccCCCCCCceEEEEcC-CcE
Confidence 999999999999998764322221 12222211 1111 11122333321 12 34566643 445
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHhcCCCCChhhhHHHHhhh-cCCCeEEecCCcc-CCCCCCCCcEEEEccCCCCCCC
Q 010623 277 RCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAV-DGGNIKTMPNRSM-PAAPYPTPGALLMGDAFNMRHP 354 (506)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~rv~LvGDAAh~~~P 354 (506)
++.+...-..... ......+++.++.. .+.+.+.+.... ........|.... ..++...+|++++||||+.++|
T Consensus 234 ~vGv~~~~~~~~~-~~~~~~~~l~~~~~---~p~~~~~~~~~~~~e~~~~~ip~gg~~~~~~~~~~g~llvGDAAg~v~p 309 (429)
T PRK10015 234 SLGLVCGLGDIAH-AQKSVPQMLEDFKQ---HPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLN 309 (429)
T ss_pred EEEEEEehhhhcc-CCCCHHHHHHHHhh---ChHHHHHhcCCEEEEEeeEEcccCCcccCCccccCCeEEEecccccccc
Confidence 5554332111111 11223333333211 122222211110 0001122232211 2346678999999999999985
Q ss_pred --CcchhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHcC
Q 010623 355 --LTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPV-ASTINTLAGALYQVFSA 417 (506)
Q Consensus 355 --~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~s~~~~~~~~~ 417 (506)
++|+|++.||.++...|+.+.+....++ -....|..|++..+.. ...-....+.+..++..
T Consensus 310 ~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d--~s~~~l~~Y~~~~~~~~~~~~l~~~~~~~~~~~~ 373 (429)
T PRK10015 310 LGFTVRGMDLAIASAQAAATTVIAAKERAD--FSASSLAQYKRELEQSCVMRDMQHFRKIPALMEN 373 (429)
T ss_pred cCccccchhHHHHHHHHHHHHHHHHHhcCC--CccccHHHHHHHHHHCHHHHHHHHHhChHhhhcC
Confidence 6999999999999999998876543211 2245679999877755 33334444445555543
No 57
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.93 E-value=1.6e-23 Score=213.76 Aligned_cols=324 Identities=20% Similarity=0.194 Sum_probs=179.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc-cccccccchHHHH-HHhCchhHHhhcccceecceEEEEC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI-VGELLQPGGYLKL-IELGLEDCVEQIDAQRVFGYALFKD 137 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~-~g~~l~~~~~~~l-~~~g~~~~~~~~~~~~~~~~~~~~~ 137 (506)
++||+||||||+|+++|+.|+++|++|+|+||.+.+..+. +|..+.....+.+ ..+.....+... .......+...
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~--~~~~~~~~~~~ 82 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERL--ITHEKLAFMTE 82 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccce--eeeeeEEEEcC
Confidence 5999999999999999999999999999999987665443 3434443333221 100000000000 00111222222
Q ss_pred CceeeeecCCcC-CCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeE
Q 010623 138 GNRTQISYPLEK-FHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLT 215 (506)
Q Consensus 138 ~~~~~~~~~~~~-~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~v 215 (506)
.......+.... .......+.+.|..|++.|.+.+.+. |++++.+ +|+++..+++++.+++ .+|+ +++|++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~-Gv~i~~~~~V~~i~~~~g~v~~v~---~~g~--~i~A~~V 156 (428)
T PRK10157 83 KSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEA-GAQLITGIRVDNLVQRDGKVVGVE---ADGD--VIEAKTV 156 (428)
T ss_pred CCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHC-CCEEECCCEEEEEEEeCCEEEEEE---cCCc--EEECCEE
Confidence 222222222111 11223457789999999999999887 7888877 5999988777654332 3454 4679999
Q ss_pred EeecCCcccchhhccCCCCCCccceeeEEEe-ccCCC-----------C-CCeeEEEecC--CC---cEEEEecCCCeEE
Q 010623 216 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLP-----------F-ENHGHVVLAD--PS---PILFYPISSNEVR 277 (506)
Q Consensus 216 V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~-----------~-~~~~~~~~~~--~~---~~~~~p~~~~~~~ 277 (506)
|+|||.+|.+++.++....... ...++... ....+ . +...+++.+. ++ ..|+|+- .+...
T Consensus 157 I~A~G~~s~l~~~lgl~~~~~~-~~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~g~~ggG~~~~~-~~~~s 234 (428)
T PRK10157 157 ILADGVNSILAEKLGMAKRVKP-TDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTN-ENTLS 234 (428)
T ss_pred EEEeCCCHHHHHHcCCCCCCCC-cEEEEEEEEEEEcCHHHHHHhhccCCCCCeEEEEEECCCCCCcCceeEEEc-CCeEE
Confidence 9999999999999887532222 22222111 00111 1 1122333321 11 2355653 33444
Q ss_pred EEEEecCCCCC--CCCchHHHHHHHHhcCCCCChhhhHHHHhhh-cCCCeEEecCCc-cCCCCCCCCcEEEEccCCCCCC
Q 010623 278 CLVDIPGQKVP--SISNGEMANYLKTVVAPQIPREIFHSFVAAV-DGGNIKTMPNRS-MPAAPYPTPGALLMGDAFNMRH 353 (506)
Q Consensus 278 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~rv~LvGDAAh~~~ 353 (506)
+.+....+... ..+..++.+.+.+ .+. +...+.... ..-.....|... ...++...++++++||||..++
T Consensus 235 vG~~~~~~~~~~~~~~~~~~l~~~~~--~p~----v~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~g~llvGDAAg~v~ 308 (428)
T PRK10157 235 LGLVCGLHHLHDAKKSVPQMLEDFKQ--HPA----VAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCM 308 (428)
T ss_pred EEEEEehHHhcccCCCHHHHHHHHHh--Cch----HHHHhCCCeEHHHHhhHhhcCCcccCCceecCCeEEEeccccccc
Confidence 44433222111 1222333333322 111 111110000 000001112111 1234556789999999999999
Q ss_pred C--CcchhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchh
Q 010623 354 P--LTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVA 401 (506)
Q Consensus 354 P--~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~ 401 (506)
| ++|+|++.||..+..+|+.+.+....+ +...+.|..|++.-+...
T Consensus 309 p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~--~~s~~~l~~Y~~~l~~~~ 356 (428)
T PRK10157 309 NLGFTIRGMDLAIAAGEAAAKTVLSAMKSD--DFSKQKLAEYRQHLESGP 356 (428)
T ss_pred ccCceeeeHHHHHHHHHHHHHHHHHHHhcC--CcchhhHHHHHHHHHHhH
Confidence 8 599999999999999999887654322 223467889997665554
No 58
>PLN02697 lycopene epsilon cyclase
Probab=99.93 E-value=8.9e-23 Score=210.16 Aligned_cols=323 Identities=19% Similarity=0.174 Sum_probs=193.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD 137 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 137 (506)
...+||+||||||+|+++|+.|++.|++|+|+|+...... ..+++ ...++.+|+.+.+.. ...+..++.+
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~---n~GvW---~~~l~~lgl~~~i~~----~w~~~~v~~~ 175 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN---NYGVW---EDEFKDLGLEDCIEH----VWRDTIVYLD 175 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCC---ccccc---hhHHHhcCcHHHHHh----hcCCcEEEec
Confidence 3459999999999999999999999999999998632211 12233 245677887765543 1222233322
Q ss_pred -CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623 138 -GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI 216 (506)
Q Consensus 138 -~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV 216 (506)
+..... ......++|..|.+.|.+.+.+. ++++..++|+++.++++.+. +. ...+|. +++|++||
T Consensus 176 ~~~~~~~---------~~~Yg~V~R~~L~~~Ll~~a~~~-GV~~~~~~V~~I~~~~~~~~-vv-~~~dG~--~i~A~lVI 241 (529)
T PLN02697 176 DDKPIMI---------GRAYGRVSRTLLHEELLRRCVES-GVSYLSSKVDRITEASDGLR-LV-ACEDGR--VIPCRLAT 241 (529)
T ss_pred CCceeec---------cCcccEEcHHHHHHHHHHHHHhc-CCEEEeeEEEEEEEcCCcEE-EE-EEcCCc--EEECCEEE
Confidence 221110 11112588999999999999886 67776668999987766543 22 245565 46799999
Q ss_pred eecCCcccchhhccCCC--C-CCccceeeEEEeccCCCCCCeeEEEec---------------CCCcEEEEecCCCeEEE
Q 010623 217 VCDGCFSNLRRSLCNPK--V-DVPSCFVGLVLENCNLPFENHGHVVLA---------------DPSPILFYPISSNEVRC 278 (506)
Q Consensus 217 ~AdG~~S~vR~~l~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~p~~~~~~~~ 278 (506)
+|||.+|. +.+..+. + ...+...|+...-...+.+....++++ .+.++|++|.++++..+
T Consensus 242 ~AdG~~S~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~~~~d~~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~V 319 (529)
T PLN02697 242 VASGAASG--RLLQYEVGGPRVCVQTAYGVEVEVENNPYDPSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFF 319 (529)
T ss_pred ECCCcChh--hhhccccCCCCcccEEEEEEEEEecCCCCCcchheeeccccccccccccccCCCceEEEEeecCCCeEEE
Confidence 99999993 2222211 1 112344555543222222111122222 12467889999986555
Q ss_pred EE-EecCCCCCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcc
Q 010623 279 LV-DIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTG 357 (506)
Q Consensus 279 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G 357 (506)
-- .+.. .+..+.+.+++.+.+.+... . +. . ..+...+....|+.. ..+.. .++++++||||+.++|.+|
T Consensus 320 E~T~l~~--~~~l~~~~l~~~L~~~l~~~-G--i~--~-~~i~~~E~g~iPm~g-~~~~~-~~~vl~vG~AAG~vhPsTG 389 (529)
T PLN02697 320 EETCLAS--KDAMPFDLLKKRLMSRLETM-G--IR--I-LKTYEEEWSYIPVGG-SLPNT-EQKNLAFGAAASMVHPATG 389 (529)
T ss_pred EEeeecc--CCCCCHHHHHHHHHHHHHhC-C--CC--c-ceEEEEEeeeecCCC-CCccc-CCCeeEeehhhcCCCCchh
Confidence 22 2211 12334556666666544311 0 10 0 011111223445533 22222 6789999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhhhcCCCCC-------hHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHc
Q 010623 358 GGMTVALSDIVILRNLLRHLSNLND-------APALCNYLESFYTLRKPVASTINTLAGALYQVFS 416 (506)
Q Consensus 358 qG~n~ai~Da~~La~~L~~~~~~~~-------~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~ 416 (506)
.|+..++.+|..+|+.+++..+.++ .......++.|++.......+....-.....++.
T Consensus 390 y~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~~r~~~~~~~g~~~l~ 455 (529)
T PLN02697 390 YSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQERKRQRAFFLFGLALIL 455 (529)
T ss_pred hhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998754332 1245678999988877665554444433334443
No 59
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.93 E-value=7e-24 Score=216.71 Aligned_cols=336 Identities=22% Similarity=0.207 Sum_probs=203.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCC---CcEEEEecCCCCCCcccccccccchHHHHHHhCchhH--HhhcccceecceEEE-
Q 010623 62 DVIVVGAGVAGAALANTLAKDG---RRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDC--VEQIDAQRVFGYALF- 135 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G---~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~--~~~~~~~~~~~~~~~- 135 (506)
||+|||||+||.++|..|++.+ ++|+|||+.. .+....|++..|.....++.+|+.+. +.+.......+..+.
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~-~~~~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~f~~ 79 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD-IPRIGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIRFVN 79 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS-S---SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC-CCCCCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEEeee
Confidence 7999999999999999999998 9999999975 34556788888888889999999976 555554444444442
Q ss_pred -EC-CceeeeecCC---------------------------------------------cC-CCCCcccccccchHHHHH
Q 010623 136 -KD-GNRTQISYPL---------------------------------------------EK-FHSDVAGRGFHNGRFVQR 167 (506)
Q Consensus 136 -~~-~~~~~~~~~~---------------------------------------------~~-~~~~~~~~~i~~~~l~~~ 167 (506)
.. +......|.. .. ......++.++|..+.+.
T Consensus 80 w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~~ 159 (454)
T PF04820_consen 80 WGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQF 159 (454)
T ss_dssp SSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHHH
T ss_pred cCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHHH
Confidence 11 1111111100 00 011234678999999999
Q ss_pred HHHHHHcCCCEEEEeceEEEEEeeCC-eEEEEEEEeCCccEEEEEcCeEEeecCCcccchhhc-cCCCCCC---ccceee
Q 010623 168 LREKAASLPNVRLEQGTVTSLLEEKG-TIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSL-CNPKVDV---PSCFVG 242 (506)
Q Consensus 168 L~~~~~~~~~v~i~~~~v~~~~~~~~-~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l-~~~~~~~---~~~~~~ 242 (506)
|++.+.+. |++++.++|+++..+++ .+. .+..++|+ +++||++|+|+|..|.+.+.. ..+.... -.+..+
T Consensus 160 L~~~A~~~-Gv~~~~g~V~~v~~~~~g~i~--~v~~~~g~--~i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~~d~a 234 (454)
T PF04820_consen 160 LRRHAEER-GVEVIEGTVVDVELDEDGRIT--AVRLDDGR--TIEADFFIDASGRRSLLARKALKVGFRDWSDWLPNDRA 234 (454)
T ss_dssp HHHHHHHT-T-EEEET-EEEEEE-TTSEEE--EEEETTSE--EEEESEEEE-SGGG-CCCCCCT-EEEEEETTTCEEEEE
T ss_pred HHHHHhcC-CCEEEeCEEEEEEEcCCCCEE--EEEECCCC--EEEEeEEEECCCccchhhHhhhcCCCccccccccccEE
Confidence 99999998 89999999888876644 444 34466775 477999999999999887763 3222111 112233
Q ss_pred EEEe--ccCCCCCCeeEEEecCCCcEEEEecCCCeEEEEEEecCCCCCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhc
Q 010623 243 LVLE--NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVD 320 (506)
Q Consensus 243 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (506)
+... ..+ +..........+.|++|.+|+.++... .+.+..+. .++++..+.+.+.+... ..
T Consensus 235 v~~~~~~~~-~~~~~T~~~a~~~GW~W~IPL~~~~~~-G~V~s~~~---~s~~~A~~~l~~~l~~~------------~~ 297 (454)
T PF04820_consen 235 VAVQVPNED-PPEPYTRSTAFEAGWIWYIPLQNRRGS-GYVYSSDF---ISDDEAEAELLAYLGGS------------PE 297 (454)
T ss_dssp EEEEEE-SS-CTTSSEEEEEESSEEEEEEEESSEEEE-EEEEETTT---SHHHHHHHHHHHHHTCH------------CT
T ss_pred EEEecCcCC-CCCCceeEEecCCceEEEccCCCcceE-EEEecccc---CCHHHHHHHHHHhcchh------------hh
Confidence 3322 122 223334455667899999999998665 33333332 12333333333322210 00
Q ss_pred CCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcch
Q 010623 321 GGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPV 400 (506)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~ 400 (506)
... ...+.......+...+|+++|||||+.++|+.++|+.+++..+..|+..|.... .+ +.+++.|++..+..
T Consensus 298 ~~~-~~i~~~~g~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~~~~--~~----~~~~~~Yn~~~~~~ 370 (454)
T PF04820_consen 298 AEP-RHIRFRSGRRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALPDDD--FS----PAALDRYNRRMRRE 370 (454)
T ss_dssp TSC-EEEE-S-EEESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHHCTT--CC----HHHHHHHHHHHHHH
T ss_pred cch-hhhcccccchhhcccCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcccCC--CC----HHHHHHHHHHHHHH
Confidence 011 222233333566677889999999999999999999999999998888887531 11 56889999999888
Q ss_pred hHHHHHHHHHHHHHHcCCCchhHHHHH
Q 010623 401 ASTINTLAGALYQVFSASPDEARKEMR 427 (506)
Q Consensus 401 ~~~~~~~s~~~~~~~~~~~~~~~~~~r 427 (506)
...+...-...+..-.....+.++..|
T Consensus 371 ~~~~~~fi~~hY~~~~r~ds~FW~~~~ 397 (454)
T PF04820_consen 371 YERIRDFISLHYQLSRRRDSPFWRARR 397 (454)
T ss_dssp HHHHHHHHHHHHHTHHS-SSHHHHHHC
T ss_pred HHHHHHHHHHHHccccCCCCHHHHhcc
Confidence 888877777777664444346655544
No 60
>PLN02463 lycopene beta cyclase
Probab=99.91 E-value=1.6e-21 Score=198.16 Aligned_cols=288 Identities=19% Similarity=0.220 Sum_probs=173.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEE-E
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALF-K 136 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~-~ 136 (506)
...+||+||||||+|+++|..|++.|++|+|+|+.+.... +....+ ..+.++++|+.+.+... .....++ .
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~-p~~~g~---w~~~l~~lgl~~~l~~~----w~~~~v~~~ 97 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIW-PNNYGV---WVDEFEALGLLDCLDTT----WPGAVVYID 97 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchh-ccccch---HHHHHHHCCcHHHHHhh----CCCcEEEEe
Confidence 3458999999999999999999999999999999753211 111111 13467788887766441 1122222 2
Q ss_pred CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623 137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI 216 (506)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV 216 (506)
++.... .......++|.+|.+.|.+.+.+. ++++..++|+++++++++ +.+.+++|+ +++||+||
T Consensus 98 ~~~~~~---------~~~~y~~V~R~~L~~~Ll~~~~~~-GV~~~~~~V~~I~~~~~~---~~V~~~dG~--~i~A~lVI 162 (447)
T PLN02463 98 DGKKKD---------LDRPYGRVNRKKLKSKMLERCIAN-GVQFHQAKVKKVVHEESK---SLVVCDDGV--KIQASLVL 162 (447)
T ss_pred CCCCcc---------ccCcceeEEHHHHHHHHHHHHhhc-CCEEEeeEEEEEEEcCCe---EEEEECCCC--EEEcCEEE
Confidence 221111 011123578999999999999876 788877789999887764 445567775 46799999
Q ss_pred eecCCcccchhhccCCCCCCccceeeEEEeccCCCCCCeeEEE-------ec--------C---CCcEEEEecCCCeEEE
Q 010623 217 VCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVV-------LA--------D---PSPILFYPISSNEVRC 278 (506)
Q Consensus 217 ~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--------~---~~~~~~~p~~~~~~~~ 278 (506)
+|||.+|.+++.-. +.....+...++...-...+.+....++ .+ + +.++|++|.++++..+
T Consensus 163 ~AdG~~s~l~~~~~-~~~~g~Q~a~Gi~~ev~~~p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~v 241 (447)
T PLN02463 163 DATGFSRCLVQYDK-PFNPGYQVAYGILAEVDSHPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFL 241 (447)
T ss_pred ECcCCCcCccCCCC-CCCccceeeeeEEeecCCCCcccccchhhhcChhhccccchhhhccCCCCceEEEEecCCCeEEE
Confidence 99999998765321 1111112334444431111111111111 01 1 3477899999986332
Q ss_pred EEEecCCCCCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcch
Q 010623 279 LVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGG 358 (506)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~Gq 358 (506)
..+.-. ..+..+.+++++.+.+.+. ...-.+. .+...+....|+... .+...+|++++||||..++|.+|.
T Consensus 242 EeT~l~-s~~~~~~~~lk~~L~~~l~-~~Gi~~~-----~i~~~E~~~IPmg~~--~~~~~~~~~~~G~aag~v~p~tG~ 312 (447)
T PLN02463 242 EETSLV-ARPGLPMDDIQERMVARLR-HLGIKVK-----SVEEDEKCVIPMGGP--LPVIPQRVLGIGGTAGMVHPSTGY 312 (447)
T ss_pred Eeeeee-cCCCCCHHHHHHHHHHHHH-HCCCCcc-----eeeeeeeeEeeCCCC--CCCCCCCEEEecchhcCcCCCccc
Confidence 222100 1122344566666555432 1110000 111112233455332 223467999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhcC
Q 010623 359 GMTVALSDIVILRNLLRHLS 378 (506)
Q Consensus 359 G~n~ai~Da~~La~~L~~~~ 378 (506)
|+..++..|..+|+.+.+..
T Consensus 313 ~i~~~~~~~~~~a~~~~~~~ 332 (447)
T PLN02463 313 MVARTLAAAPIVADAIVEYL 332 (447)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998764
No 61
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.89 E-value=5.5e-21 Score=190.97 Aligned_cols=297 Identities=18% Similarity=0.192 Sum_probs=168.2
Q ss_pred cEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHH----hhcccceecceEEE
Q 010623 62 DVIVVGAGVAGAALANTLAKD--GRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCV----EQIDAQRVFGYALF 135 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~----~~~~~~~~~~~~~~ 135 (506)
||+|||||++|+++|+.|++. |++|+|+|+.+..... ..+ .+...++.+.. ..........+.++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~----~tw-----~~~~~~~~~~~~~~~~~~v~~~W~~~~v~ 71 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN----HTW-----SFFDSDLSDAQHAWLADLVQTDWPGYEVR 71 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc----ccc-----eecccccchhhhhhhhhhheEeCCCCEEE
Confidence 899999999999999999987 9999999998632211 011 11112222111 11111122223333
Q ss_pred ECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeE
Q 010623 136 KDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLT 215 (506)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~v 215 (506)
.++..... ......+++.+|.+.|.+.+.. ++ ...++|+++ +++ +|++ .+|++ ++|++|
T Consensus 72 ~~~~~~~l---------~~~Y~~I~r~~f~~~l~~~l~~--~i-~~~~~V~~v--~~~---~v~l--~dg~~--~~A~~V 130 (370)
T TIGR01789 72 FPKYRRKL---------KTAYRSMTSTRFHEGLLQAFPE--GV-ILGRKAVGL--DAD---GVDL--APGTR--INARSV 130 (370)
T ss_pred Ccchhhhc---------CCCceEEEHHHHHHHHHHhhcc--cE-EecCEEEEE--eCC---EEEE--CCCCE--EEeeEE
Confidence 22111111 1123478889999999877643 32 223468877 333 3554 56764 669999
Q ss_pred EeecCCcccchhhccCCCCCCccceeeEEEeccCCCCC-CeeEE---Eec-CC--CcEEEEecCCCeEEEEEEecCCCCC
Q 010623 216 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFE-NHGHV---VLA-DP--SPILFYPISSNEVRCLVDIPGQKVP 288 (506)
Q Consensus 216 V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~-~~--~~~~~~p~~~~~~~~~~~~~~~~~~ 288 (506)
|+|||.+|.-... ...+++.|+.... ..|.. +.... .+. .+ .+++++|.++++..+-.+.... .+
T Consensus 131 I~A~G~~s~~~~~------~~~Q~f~G~~~r~-~~p~~~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s~-~~ 202 (370)
T TIGR01789 131 IDCRGFKPSAHLK------GGFQVFLGREMRL-QEPHGLENPIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTYYAD-DP 202 (370)
T ss_pred EECCCCCCCcccc------ceeeEEEEEEEEE-cCCCCCCccEEEeeeccCCCCceEEEECcCCCCeEEEEEEeccC-CC
Confidence 9999999752211 1235666776542 23322 21111 121 12 2556689999865543322211 23
Q ss_pred CCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCcc---CCCCCCCCcEEEEccCCCCCCCCcchhhHHHHH
Q 010623 289 SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSM---PAAPYPTPGALLMGDAFNMRHPLTGGGMTVALS 365 (506)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~ 365 (506)
..+.+..++.+.+++... ..... +.... +....|+... .+.....++|+++|||||.++|.+|||++.+++
T Consensus 203 ~l~~~~l~~~l~~~~~~~-g~~~~----~i~~~-e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~ 276 (370)
T TIGR01789 203 LLDRNALSQRIDQYARAN-GWQNG----TPVRH-EQGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVE 276 (370)
T ss_pred CCCHHHHHHHHHHHHHHh-CCCce----EEEEe-eeeEEeeecCCCcccccccCCceeeeecccccccccccccHHHHHH
Confidence 455666666666543211 00000 00111 1234554321 111122456999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhcchhHHHHHH
Q 010623 366 DIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTL 407 (506)
Q Consensus 366 Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~ 407 (506)
||..|++.+... +....+++..|..+|+++.......
T Consensus 277 ~a~~la~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (370)
T TIGR01789 277 NADALAAQPDLS-----SEQLAAFIDSRARRHWSKTGYYRLL 313 (370)
T ss_pred HHHHHHhccCcC-----ccchhhhhhHHHHHHHHHhHHHHHH
Confidence 999999988511 1133456788998888777655433
No 62
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.85 E-value=3.9e-19 Score=178.51 Aligned_cols=278 Identities=22% Similarity=0.226 Sum_probs=171.3
Q ss_pred cEEEECCCHHHHHHHHHH--HHCCCcEEEEecCCCCC-CcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623 62 DVIVVGAGVAGAALANTL--AKDGRRVHVIERDLSEP-DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG 138 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~L--a~~G~~v~vvE~~~~~~-~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 138 (506)
||+||||||||+++|+.| ++.|.+|+|+|+.+... ...+....+.. .++..+.+. .....+..++.++
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~------~~~~~~~~v---~~~w~~~~v~~~~ 71 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEK------DLGPLDSLV---SHRWSGWRVYFPD 71 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccc------cccchHHHH---heecCceEEEeCC
Confidence 899999999999999999 88899999999986541 11111111111 111111111 1233344444433
Q ss_pred ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623 139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC 218 (506)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A 218 (506)
...... ......+++.+|.+.|.+.+. .+++.+..++|++++..++ ++.+...+|+ +++|++||+|
T Consensus 72 ~~~~~~--------~~~Y~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~---~~~v~~~~g~--~i~a~~VvDa 137 (374)
T PF05834_consen 72 GSRILI--------DYPYCMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGD---GVLVVLADGR--TIRARVVVDA 137 (374)
T ss_pred CceEEc--------ccceEEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCc---eEEEEECCCC--EEEeeEEEEC
Confidence 321111 112347899999999999999 5577777778999988877 3455677887 4679999999
Q ss_pred cCCcccchhhccCCCCCCccceeeEEEeccCCC--CCCeeE---EEec----CCCcEEEEecCCCeEEEEEEecCCCCCC
Q 010623 219 DGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLP--FENHGH---VVLA----DPSPILFYPISSNEVRCLVDIPGQKVPS 289 (506)
Q Consensus 219 dG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 289 (506)
+|..+.... ....+++.|+... .+.+ +++... +... ...+++++|.++++..+-.+.-... +.
T Consensus 138 ~g~~~~~~~------~~~~Q~f~G~~v~-~~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~~-~~ 209 (374)
T PF05834_consen 138 RGPSSPKAR------PLGLQHFYGWEVE-TDEPVFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFSPR-PA 209 (374)
T ss_pred CCccccccc------ccccceeEEEEEe-ccCCCCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEcCC-CC
Confidence 997766211 1122466777654 2222 222111 1122 2347788999998755544333221 22
Q ss_pred CCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEecCCccCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHH
Q 010623 290 ISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVI 369 (506)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~ 369 (506)
.+.+++++.+.+.+.. ..-... .+...+....|+......+...++++.+|+|++.++|.+|.++..+.+.|..
T Consensus 210 ~~~~~~~~~l~~~l~~-~g~~~~-----~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ 283 (374)
T PF05834_consen 210 LPEEELKARLRRYLER-LGIDDY-----EILEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQADA 283 (374)
T ss_pred CCHHHHHHHHHHHHHH-cCCCce-----eEEEeecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHHHHHHHH
Confidence 4455666666654432 110100 0111123345664334455556779999999999999999999999999999
Q ss_pred HHHHhhh
Q 010623 370 LRNLLRH 376 (506)
Q Consensus 370 La~~L~~ 376 (506)
+|..|.+
T Consensus 284 ia~~l~~ 290 (374)
T PF05834_consen 284 IADALAK 290 (374)
T ss_pred HHHHHhh
Confidence 9998885
No 63
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.60 E-value=1.3e-14 Score=137.10 Aligned_cols=141 Identities=26% Similarity=0.271 Sum_probs=97.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccc-------cccchHHHHHHhCchhHHhhcccceecce
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGEL-------LQPGGYLKLIELGLEDCVEQIDAQRVFGY 132 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~-------l~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 132 (506)
++||+||||||+|+++|+.|++.|++|+|+||.+.......+.. +.....+.|+++|+.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~-------------- 90 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIR-------------- 90 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCC--------------
Confidence 58999999999999999999999999999999875433221111 111122333333322
Q ss_pred EEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCC-eEEEEEEEeC----Cc-
Q 010623 133 ALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKG-TIKGVQYKTK----AG- 205 (506)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~-~v~~v~v~~~----~G- 205 (506)
+... ....+.+++..+...|.+.+.+. +++++++ +|+++..+++ ++.++.+... +|
T Consensus 91 -~~~~---------------~~g~~~vd~~~l~~~L~~~A~~~-Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~ 153 (257)
T PRK04176 91 -YKEV---------------EDGLYVADSVEAAAKLAAAAIDA-GAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGL 153 (257)
T ss_pred -ceee---------------cCcceeccHHHHHHHHHHHHHHc-CCEEEcCceeceeeEeCCCcEEEEEEccccccccCC
Confidence 0000 00123467788999999999887 7888877 4999987655 7877776421 12
Q ss_pred --cEEEEEcCeEEeecCCcccchhhccC
Q 010623 206 --EELTAYAPLTIVCDGCFSNLRRSLCN 231 (506)
Q Consensus 206 --~~~~i~a~~vV~AdG~~S~vR~~l~~ 231 (506)
+..+++|++||+|+|.+|.+.+.+..
T Consensus 154 ~~~~~~i~Ak~VI~ATG~~a~v~~~l~~ 181 (257)
T PRK04176 154 HVDPLTIEAKAVVDATGHDAEVVSVLAR 181 (257)
T ss_pred CCCcEEEEcCEEEEEeCCCcHHHHHHHH
Confidence 34578999999999999999887743
No 64
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.56 E-value=6.1e-14 Score=132.17 Aligned_cols=140 Identities=27% Similarity=0.344 Sum_probs=95.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccc-------cccchHHHHHHhCchhHHhhcccceecce
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGEL-------LQPGGYLKLIELGLEDCVEQIDAQRVFGY 132 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~-------l~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 132 (506)
++||+||||||+||++|+.|+++|++|+|+||++.......+.. +.....+.++++|+.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~-------------- 86 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIR-------------- 86 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCC--------------
Confidence 58999999999999999999999999999999976433221111 111112233322221
Q ss_pred EEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCC--eEEEEEEEeC----Cc
Q 010623 133 ALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKG--TIKGVQYKTK----AG 205 (506)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~--~v~~v~v~~~----~G 205 (506)
+...+ ...+..++..+.+.|.+.+.+. ++++++++ ++++..+++ ++.+|.+... +|
T Consensus 87 -~~~~~---------------~g~~~~~~~el~~~L~~~a~e~-GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g 149 (254)
T TIGR00292 87 -YEDEG---------------DGYVVADSAEFISTLASKALQA-GAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAG 149 (254)
T ss_pred -eeecc---------------CceEEeeHHHHHHHHHHHHHHc-CCEEECCcEEEEEEEeCCCCceEEEEeCCccccccC
Confidence 00000 0012346678899999999888 68888775 999987766 5778776321 12
Q ss_pred ---cEEEEEcCeEEeecCCcccchhhcc
Q 010623 206 ---EELTAYAPLTIVCDGCFSNLRRSLC 230 (506)
Q Consensus 206 ---~~~~i~a~~vV~AdG~~S~vR~~l~ 230 (506)
+..+++|++||.|||..|.+.+.+.
T Consensus 150 ~~~d~~~i~Ak~VVdATG~~a~v~~~l~ 177 (254)
T TIGR00292 150 LHVDPLTQRSRVVVDATGHDAEIVAVCA 177 (254)
T ss_pred CCCCCEEEEcCEEEEeecCCchHHHHHH
Confidence 3467899999999999998877663
No 65
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.53 E-value=1e-13 Score=122.66 Aligned_cols=137 Identities=31% Similarity=0.332 Sum_probs=90.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCccccc-------ccccchHHHHHHhCchhHHhhcccceecce
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGE-------LLQPGGYLKLIELGLEDCVEQIDAQRVFGY 132 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~-------~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 132 (506)
++||+||||||+||++|+.|++.|++|+|+|++..+.....+. .++..+..+|+++|+.- .+
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y--~~--------- 85 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPY--EE--------- 85 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT-----EE---------
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCcee--EE---------
Confidence 5899999999999999999999999999999987655433322 23445667777777641 00
Q ss_pred EEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeC-CeEEEEEEEe----CCc-
Q 010623 133 ALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEK-GTIKGVQYKT----KAG- 205 (506)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~-~~v~~v~v~~----~~G- 205 (506)
.....+..+...+...|...+.+. |+++++.. |+++...+ ++|.|+.+.- ..|
T Consensus 86 -------------------~~~g~~v~d~~~~~s~L~s~a~~a-Gakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~gl 145 (230)
T PF01946_consen 86 -------------------YGDGYYVADSVEFTSTLASKAIDA-GAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGL 145 (230)
T ss_dssp --------------------SSEEEES-HHHHHHHHHHHHHTT-TEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--
T ss_pred -------------------eCCeEEEEcHHHHHHHHHHHHhcC-CCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhc
Confidence 001112345567888888888874 89999885 99998766 8999888752 122
Q ss_pred --cEEEEEcCeEEeecCCcccchh
Q 010623 206 --EELTAYAPLTIVCDGCFSNLRR 227 (506)
Q Consensus 206 --~~~~i~a~~vV~AdG~~S~vR~ 227 (506)
...+++|++||.|||.-+.+-+
T Consensus 146 HvDPl~i~ak~ViDaTGHda~v~~ 169 (230)
T PF01946_consen 146 HVDPLTIRAKVVIDATGHDAEVVR 169 (230)
T ss_dssp T-B-EEEEESEEEE---SSSSSTS
T ss_pred CCCcceEEEeEEEeCCCCchHHHH
Confidence 3468999999999999886543
No 66
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.52 E-value=1.5e-12 Score=131.97 Aligned_cols=216 Identities=19% Similarity=0.169 Sum_probs=131.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC-cccccccccchHHHHHHhCch---hHHhhc------ccc-
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD-RIVGELLQPGGYLKLIELGLE---DCVEQI------DAQ- 127 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~-~~~g~~l~~~~~~~l~~~g~~---~~~~~~------~~~- 127 (506)
.++||+|||||+.|+.+|+.++.+|++|+|+|+++..+. .++...+-++|.+.|++..+. +.+.+- ...
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH~ 90 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPHL 90 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCccc
Confidence 579999999999999999999999999999999875443 344556888888888764332 333221 100
Q ss_pred --eecceEEEEC-------------------Cce----eeeecCCc-------CC-------CCCcccccccchHHHHHH
Q 010623 128 --RVFGYALFKD-------------------GNR----TQISYPLE-------KF-------HSDVAGRGFHNGRFVQRL 168 (506)
Q Consensus 128 --~~~~~~~~~~-------------------~~~----~~~~~~~~-------~~-------~~~~~~~~i~~~~l~~~L 168 (506)
+........+ +.. ........ .. ......+.++..+|....
T Consensus 91 v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~~ 170 (532)
T COG0578 91 VEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAAN 170 (532)
T ss_pred cccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHHH
Confidence 1111111111 100 00000000 00 001122356667788888
Q ss_pred HHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCcc-cchhhccCCCCCC--ccceeeEE
Q 010623 169 REKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFS-NLRRSLCNPKVDV--PSCFVGLV 244 (506)
Q Consensus 169 ~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S-~vR~~l~~~~~~~--~~~~~~~~ 244 (506)
...+.+.|...+.+.+|+++..+++ +++|++.+ .+|++++++|+.||+|+|+|+ .+++..+...... -....|..
T Consensus 171 a~~A~~~Ga~il~~~~v~~~~re~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~~~~~~~vr~skGsH 249 (532)
T COG0578 171 ARDAAEHGAEILTYTRVESLRREGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLEQSPHIGVRPSKGSH 249 (532)
T ss_pred HHHHHhcccchhhcceeeeeeecCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhcccCCCCccceeccceE
Confidence 8888888555555557999999988 99999988 468899999999999999999 4677665432211 11112222
Q ss_pred Ee-ccCCCCCCeeEEEec-CCCcEEEEecCCCe
Q 010623 245 LE-NCNLPFENHGHVVLA-DPSPILFYPISSNE 275 (506)
Q Consensus 245 ~~-~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~ 275 (506)
+. +...+.+....+... ++...+++|..+..
T Consensus 250 lVv~~~~~~~~a~~~~~~~d~r~~f~iP~~~~~ 282 (532)
T COG0578 250 LVVDKKFPINQAVINRCRKDGRIVFAIPYEGKT 282 (532)
T ss_pred EEecccCCCCceEEeecCCCCceEEEecCCCCE
Confidence 22 222333332223333 45577888888763
No 67
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.50 E-value=3.8e-13 Score=118.11 Aligned_cols=139 Identities=27% Similarity=0.319 Sum_probs=97.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccc-------cccchHHHHHHhCchhHHhhcccceecce
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGEL-------LQPGGYLKLIELGLEDCVEQIDAQRVFGY 132 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~-------l~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 132 (506)
+.||+||||||+||+||+.|++.|++|+|+||+-.+.....+.+ +...+.++|+++|+.-+-.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~---------- 99 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEE---------- 99 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceec----------
Confidence 47999999999999999999999999999999865544333221 2334446666666541000
Q ss_pred EEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCC-eEEEEEEEe----CCc-
Q 010623 133 ALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKG-TIKGVQYKT----KAG- 205 (506)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~-~v~~v~v~~----~~G- 205 (506)
....+..+-..+...|...+.+. ++.++++. |+++...++ +|.||.+.= ..+
T Consensus 100 --------------------e~g~~v~ds~e~~skl~~~a~~a-Gaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~l 158 (262)
T COG1635 100 --------------------EDGYYVADSAEFASKLAARALDA-GAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGL 158 (262)
T ss_pred --------------------CCceEEecHHHHHHHHHHHHHhc-CceeeecceEEEEEEecCCceEEEEEecchhhhccc
Confidence 00112345556788888888887 58888885 999987766 788887631 112
Q ss_pred --cEEEEEcCeEEeecCCcccchhhc
Q 010623 206 --EELTAYAPLTIVCDGCFSNLRRSL 229 (506)
Q Consensus 206 --~~~~i~a~~vV~AdG~~S~vR~~l 229 (506)
...+++|++||.|||.-..+-+.+
T Consensus 159 hvDPl~i~a~~VvDaTGHda~v~~~~ 184 (262)
T COG1635 159 HVDPLTIRAKAVVDATGHDAEVVSFL 184 (262)
T ss_pred ccCcceeeEEEEEeCCCCchHHHHHH
Confidence 235789999999999887665444
No 68
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.47 E-value=6.1e-12 Score=120.12 Aligned_cols=302 Identities=23% Similarity=0.284 Sum_probs=164.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCCccc-ccccccchHHHHHHhCchhHHhhccccee-
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKD------GRRVHVIERDLSEPDRIV-GELLQPGGYLKLIELGLEDCVEQIDAQRV- 129 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~------G~~v~vvE~~~~~~~~~~-g~~l~~~~~~~l~~~g~~~~~~~~~~~~~- 129 (506)
...+||+|||||||||++|+.|.+. .++|+|+||......+.. |..+.|.++..| +--|.+...-...+.
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL--~P~wke~~apl~t~vT 151 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDEL--LPDWKEDGAPLNTPVT 151 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhh--CcchhhcCCccccccc
Confidence 3579999999999999999998763 579999999987765543 445666654433 111111100001111
Q ss_pred -cceEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEe-eCCeEEEEEEEe----
Q 010623 130 -FGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLE-EKGTIKGVQYKT---- 202 (506)
Q Consensus 130 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~-~~~~v~~v~v~~---- 202 (506)
..+.+..... .+..|..........|+++-.++.+.|-+.+++. |+++.-+- +.++.. +++.|.|+...+
T Consensus 152 ~d~~~fLt~~~--~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~-GvEiyPg~aaSevly~edgsVkGiaT~D~GI~ 228 (621)
T KOG2415|consen 152 SDKFKFLTGKG--RISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEEL-GVEIYPGFAASEVLYDEDGSVKGIATNDVGIS 228 (621)
T ss_pred ccceeeeccCc--eeecCCCcccccCCcEEEEHHHHHHHHHHHHHhh-CceeccccchhheeEcCCCcEeeEeecccccc
Confidence 1122222111 2223322122233457888899999999999999 88888774 666664 466677766432
Q ss_pred CCccE-------EEEEcCeEEeecCCcccchhhccCCC----CCCccceeeEEE---eccCCCCCCeeEE-----Ee-cC
Q 010623 203 KAGEE-------LTAYAPLTIVCDGCFSNLRRSLCNPK----VDVPSCFVGLVL---ENCNLPFENHGHV-----VL-AD 262 (506)
Q Consensus 203 ~~G~~-------~~i~a~~vV~AdG~~S~vR~~l~~~~----~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~-~~ 262 (506)
++|.. .++.|+..|-|.|.+..+-+++-... -..++. .|+-+ +..+....+.+.+ |- .+
T Consensus 229 k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qt-YglGlKEvWei~~~~~~pG~v~HT~GwPl~~ 307 (621)
T KOG2415|consen 229 KDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQT-YGLGLKEVWEIDPENHNPGEVAHTLGWPLDN 307 (621)
T ss_pred CCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcce-eccccceeEecChhhcCCcceeeeccCcccC
Confidence 23321 25779999999999998877663211 111111 12211 1111111111111 11 11
Q ss_pred C--CcEEEEecCCCeEEEEEEec-CCCCCCCCchHHHHHHHHhcCCCCChhhhHHHHhhhcCCCeEEec--------CCc
Q 010623 263 P--SPILFYPISSNEVRCLVDIP-GQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMP--------NRS 331 (506)
Q Consensus 263 ~--~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 331 (506)
. +-.++|.+.++.+.+.+.+. .-..|.+++-..-+.++. .+.+.+.+ +-+....+. ...
T Consensus 308 ~tYGGsFlYh~~d~~VavGlVVgLdY~NP~lsP~~EFQk~K~------hP~i~~vl----eGgk~i~YgARaLNEGGfQs 377 (621)
T KOG2415|consen 308 DTYGGSFLYHFNDPLVAVGLVVGLDYKNPYLSPYKEFQKMKH------HPSISKVL----EGGKRIAYGARALNEGGFQS 377 (621)
T ss_pred CccCceeEEEcCCCeEEEEEEEEecCCCCCCCHHHHHHHhhc------Ccchhhhh----cCcceeeehhhhhccCCccc
Confidence 1 23456777776555544332 222344443222222221 12233322 212111111 111
Q ss_pred cCCCCCCCCcEEEEccCCCCCCCCcchhhHHHHHHHHHHHHHhhhc
Q 010623 332 MPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHL 377 (506)
Q Consensus 332 ~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~ 377 (506)
.+-..| ++=+|||-+|+.++----.|..+||.++...|+.+-..
T Consensus 378 iPkl~F--PGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~a 421 (621)
T KOG2415|consen 378 IPKLVF--PGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEA 421 (621)
T ss_pred Cccccc--CCceEeecccccccccccccchhhhhcchhHHHHHHHH
Confidence 122223 33378999999999888899999999999999887654
No 69
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.46 E-value=1.1e-12 Score=129.19 Aligned_cols=173 Identities=21% Similarity=0.319 Sum_probs=108.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC-cccccccccchHHHHHHh----Cc------hhHHhh---
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD-RIVGELLQPGGYLKLIEL----GL------EDCVEQ--- 123 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~-~~~g~~l~~~~~~~l~~~----g~------~~~~~~--- 123 (506)
..++||+|||||.+|..+|+..+-+|++|.++|+++..+. .+...-+-++|++.|++. .. .+.+.+
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLekAi~~lD~~qyrlV~eaL~ER~~ 144 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEKAISNLDYEQYRLVKEALNERAN 144 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999999976544 334455778888887652 11 111211
Q ss_pred ---cccc---------ee----------cceEEEE--CCce-e-----------eeecCCcCCCC--C---cccccccch
Q 010623 124 ---IDAQ---------RV----------FGYALFK--DGNR-T-----------QISYPLEKFHS--D---VAGRGFHNG 162 (506)
Q Consensus 124 ---~~~~---------~~----------~~~~~~~--~~~~-~-----------~~~~~~~~~~~--~---~~~~~i~~~ 162 (506)
.... ++ .+..+++ .|.. . ...+|+..... . ......+..
T Consensus 145 lle~APhLs~~lPImlPvy~wwQvpYyw~G~K~YD~vAG~k~Lk~S~~lSk~~alE~fPmL~~~~L~Ga~VYyDGQ~nDa 224 (680)
T KOG0042|consen 145 LLEIAPHLSQPLPIMLPVYKWWQVPYYWVGLKIYDLVAGSKNLKSSYFLSKKEALEIFPMLRKDNLKGAMVYYDGQHNDA 224 (680)
T ss_pred HhhcCccccCCcceeeehhhhhhhhheeecceeeeeeccccccccceeecHHHHHHhCccccccCceeEEEEecCCCchH
Confidence 0000 00 1111111 1111 0 11122111000 0 111234556
Q ss_pred HHHHHHHHHHHcCCCEEEEec-eEEEEEeeC-CeEEEEEEEe-CCccEEEEEcCeEEeecCCcc-cchhhccC
Q 010623 163 RFVQRLREKAASLPNVRLEQG-TVTSLLEEK-GTIKGVQYKT-KAGEELTAYAPLTIVCDGCFS-NLRRSLCN 231 (506)
Q Consensus 163 ~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~-~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S-~vR~~l~~ 231 (506)
++.-.+.-.+.++ |.++.+. +|.++..++ +++.|+.+.+ .+|++++|+|+.||+|+|.+| .+|++-..
T Consensus 225 Rmnl~vAlTA~r~-GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~Mdd~ 296 (680)
T KOG0042|consen 225 RMNLAVALTAARN-GATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKMDDE 296 (680)
T ss_pred HHHHHHHHHHHhc-chhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhhccc
Confidence 7777777777777 4455444 688888664 4577898887 489999999999999999999 56766544
No 70
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.45 E-value=4.7e-12 Score=136.77 Aligned_cols=212 Identities=20% Similarity=0.196 Sum_probs=117.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCC--CCCCC-----CCC-----CCcccC-CCCCCCCcEEEEC
Q 010623 1 MADQYTWGLILGAVLGLVAVYNLGLLALYNLVMRSKSEDN--GADSL-----RKT-----PTTALN-GECPFDADVIVVG 67 (506)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~-----~~~~~~-~~~~~~~dVvIVG 67 (506)
|++++..+++++|++.+..+++ ++....|+..+.+. ++..+ +.. ..+... ...+.++||+|||
T Consensus 192 l~~~~~~~~~~~t~t~a~~vr~----~l~~~GF~v~~~~~~g~kr~~~~~~~~~~~~~~~~~~w~~~~~~~~~~dVvIIG 267 (662)
T PRK01747 192 LARLARPGATLATFTSAGFVRR----GLQEAGFTVRKVKGFGRKREMLVGELEQTLPAPLAAPWFARPGSPKARDAAIIG 267 (662)
T ss_pred HHHHhCCCCEEEEeehHHHHHH----HHHHcCCeeeecCCCchhhhhhhehhccccCCCCCCCcccCCCcCCCCCEEEEC
Confidence 4677888889999999999987 68888887654422 11111 000 001000 1111247999999
Q ss_pred CCHHHHHHHHHHHHCCCcEEEEecCCCCCC----cccccccccc----h---HHHH-----HHhCchhHHhhccc---ce
Q 010623 68 AGVAGAALANTLAKDGRRVHVIERDLSEPD----RIVGELLQPG----G---YLKL-----IELGLEDCVEQIDA---QR 128 (506)
Q Consensus 68 gG~aGl~~A~~La~~G~~v~vvE~~~~~~~----~~~g~~l~~~----~---~~~l-----~~~g~~~~~~~~~~---~~ 128 (506)
||++|+++|+.|+++|++|+|+||...+.. +..| .+.+. . .+.. ....++..+.+... ..
T Consensus 268 aGIaG~s~A~~La~~G~~V~VlE~~~~~~~gaSg~~~G-~l~~~~~~~~~~~~~l~~~a~~~a~~~~~~l~~~~~~~~~~ 346 (662)
T PRK01747 268 GGIAGAALALALARRGWQVTLYEADEAPAQGASGNRQG-ALYPLLSKDDNALSRFFRAAFLFARRFYDALPAAGVAFDHD 346 (662)
T ss_pred ccHHHHHHHHHHHHCCCeEEEEecCCCccccCCcCccc-ccccccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 999999999999999999999999853221 1111 12111 0 1111 11122222221000 01
Q ss_pred ecceE-EEECCcee-------ee-----------------ecCCcCCC---CCcccccccchHHHHHHHHHHHcCCCEEE
Q 010623 129 VFGYA-LFKDGNRT-------QI-----------------SYPLEKFH---SDVAGRGFHNGRFVQRLREKAASLPNVRL 180 (506)
Q Consensus 129 ~~~~~-~~~~~~~~-------~~-----------------~~~~~~~~---~~~~~~~i~~~~l~~~L~~~~~~~~~v~i 180 (506)
..+.. +..+.... .. ..+..... ..+.+..++...+...|.+.+.+ ++++
T Consensus 347 ~~G~l~~a~~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~g~~~p~~G~v~p~~l~~aL~~~a~~--Gv~i 424 (662)
T PRK01747 347 WCGVLQLAWDEKSAEKIAKMLALGLPAELARALDAEEAEELAGLPVPCGGIFYPQGGWLCPAELCRALLALAGQ--QLTI 424 (662)
T ss_pred CCceEEeecCchHHHHHHHHHhccCchHhhhhCCHHHHHHHhCCCCCCCcEEeCCCCeeCHHHHHHHHHHhccc--CcEE
Confidence 11111 11110000 00 00000000 01122345677899999998877 6777
Q ss_pred Eec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCccc
Q 010623 181 EQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN 224 (506)
Q Consensus 181 ~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~ 224 (506)
+.+ +|+++..++++ +++.+.+|.. ++||.||.|+|.+|.
T Consensus 425 ~~~~~V~~i~~~~~~---~~v~t~~g~~--~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 425 HFGHEVARLEREDDG---WQLDFAGGTL--ASAPVVVLANGHDAA 464 (662)
T ss_pred EeCCEeeEEEEeCCE---EEEEECCCcE--EECCEEEECCCCCcc
Confidence 766 59999877764 4455666653 569999999999985
No 71
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.43 E-value=4.9e-11 Score=124.59 Aligned_cols=169 Identities=17% Similarity=0.214 Sum_probs=95.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC-cccccccccchHHHHHHhCc--h-hHH------hhccc
Q 010623 57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD-RIVGELLQPGGYLKLIELGL--E-DCV------EQIDA 126 (506)
Q Consensus 57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~-~~~g~~l~~~~~~~l~~~g~--~-~~~------~~~~~ 126 (506)
|+.++||+|||||++|+++|+.|+++|++|+|+||++.... .+++..+-+.+.+.+....+ . +.+ .+...
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~~ss~lihgG~ryl~~~~~~l~~e~l~er~~l~~~~p 82 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSSASTKLIHGGLRYLEHYEFRLVREALAEREVLLRMAP 82 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccccccchHHHhhhccHHHHHHHHHHHHHHHHhCC
Confidence 34569999999999999999999999999999999854322 22333344455554433111 0 101 01000
Q ss_pred ceecceEE---EEC-------------------Cce-----eeeecC---C-cCCCCC------cccccccchHHHHHHH
Q 010623 127 QRVFGYAL---FKD-------------------GNR-----TQISYP---L-EKFHSD------VAGRGFHNGRFVQRLR 169 (506)
Q Consensus 127 ~~~~~~~~---~~~-------------------~~~-----~~~~~~---~-~~~~~~------~~~~~i~~~~l~~~L~ 169 (506)
.......+ ... +.. ...... . ...... +....++...+...+.
T Consensus 83 ~~~~~l~~~~~~~~~~~~~~~~~~gl~lyd~~~~~~~l~~~~~~~~~~~~~~~~L~~~l~g~~~~~dg~vd~~rl~~~l~ 162 (508)
T PRK12266 83 HIIWPMRFVLPHRPHLRPAWMIRAGLFLYDHLGKRKSLPGSRGLDLGRDPAGSPLKPEITRGFEYSDCWVDDARLVVLNA 162 (508)
T ss_pred CcccccceEEEecccccchHHHHHHHHHHHhhcCCCCCChhhhhchhhcccCCCcchhhcEEEEEcCcccCHHHHHHHHH
Confidence 00000000 000 000 000000 0 000000 1112356667777888
Q ss_pred HHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCccc-chh
Q 010623 170 EKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSN-LRR 227 (506)
Q Consensus 170 ~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~-vR~ 227 (506)
+.+.+. |+++.++ +|+++..+++.+ ++++.+ .+|+..+++|+.||+|+|.|+. +++
T Consensus 163 ~~A~~~-Ga~i~~~~~V~~i~~~~~~~-~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~ 221 (508)
T PRK12266 163 RDAAER-GAEILTRTRVVSARRENGLW-HVTLEDTATGKRYTVRARALVNAAGPWVKQFLD 221 (508)
T ss_pred HHHHHc-CCEEEcCcEEEEEEEeCCEE-EEEEEEcCCCCEEEEEcCEEEECCCccHHHHHh
Confidence 888887 6677766 699998776643 466554 3566667899999999999984 444
No 72
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.43 E-value=2.3e-11 Score=127.10 Aligned_cols=169 Identities=20% Similarity=0.234 Sum_probs=97.0
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC-cccccccccchHHHHHHhCch---hHH------hhccc
Q 010623 57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD-RIVGELLQPGGYLKLIELGLE---DCV------EQIDA 126 (506)
Q Consensus 57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~-~~~g~~l~~~~~~~l~~~g~~---~~~------~~~~~ 126 (506)
|+.++||+|||||++|+++|+.|+++|++|+|+||.+.... .++...+-+.+.+.+....+. +.+ .+...
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~ap 82 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAAAP 82 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHhCC
Confidence 34569999999999999999999999999999999864322 122223334444444332211 111 11000
Q ss_pred ceec--ceEEE-ECCce------------------------eeee-------cCCcC-C--CCCcccccccchHHHHHHH
Q 010623 127 QRVF--GYALF-KDGNR------------------------TQIS-------YPLEK-F--HSDVAGRGFHNGRFVQRLR 169 (506)
Q Consensus 127 ~~~~--~~~~~-~~~~~------------------------~~~~-------~~~~~-~--~~~~~~~~i~~~~l~~~L~ 169 (506)
.... .+.+- ..... ..+. .+... . ...+....++...+...+.
T Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl~~~l~ 162 (502)
T PRK13369 83 HIIWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARLVVLNA 162 (502)
T ss_pred ccccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEEEEcCeeecHHHHHHHHH
Confidence 0000 00000 00000 0000 00000 0 0001112356677888888
Q ss_pred HHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCccc-chh
Q 010623 170 EKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN-LRR 227 (506)
Q Consensus 170 ~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~-vR~ 227 (506)
..+.+. |+++.+. +|+++..+++. .+|++.+..|++.+++|+.||+|+|.||. +.+
T Consensus 163 ~~a~~~-Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~ 220 (502)
T PRK13369 163 LDAAER-GATILTRTRCVSARREGGL-WRVETRDADGETRTVRARALVNAAGPWVTDVIH 220 (502)
T ss_pred HHHHHC-CCEEecCcEEEEEEEcCCE-EEEEEEeCCCCEEEEEecEEEECCCccHHHHHh
Confidence 888888 5666666 59999877654 34666555577778999999999999984 544
No 73
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.41 E-value=5.7e-12 Score=131.59 Aligned_cols=166 Identities=18% Similarity=0.179 Sum_probs=97.8
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc--cccccccchHHHHHHhCchhHHhhcc---------
Q 010623 57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI--VGELLQPGGYLKLIELGLEDCVEQID--------- 125 (506)
Q Consensus 57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~--~g~~l~~~~~~~l~~~g~~~~~~~~~--------- 125 (506)
.+.++||||||||.+|+++|+.+++.|.+|+|+||.+...... .+..++....+..+..|+.+....+.
T Consensus 58 ~~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~ 137 (506)
T PRK06481 58 LKDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGG 137 (506)
T ss_pred ccccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCC
Confidence 3457999999999999999999999999999999987543221 11122221222222223221100000
Q ss_pred -----------c--------ceecceEEEECCceeeeecCC-cCCC--CCcccccccchHHHHHHHHHHHcCCCEEEEec
Q 010623 126 -----------A--------QRVFGYALFKDGNRTQISYPL-EKFH--SDVAGRGFHNGRFVQRLREKAASLPNVRLEQG 183 (506)
Q Consensus 126 -----------~--------~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~ 183 (506)
. ....++.+... ..+. .... ..+......-..+...|.+.+.+. +++++.+
T Consensus 138 ~~d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~------~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~-gv~i~~~ 210 (506)
T PRK06481 138 TNDKALLRYFVDNSASAIDWLDSMGIKLDNL------TITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQER-KIPLFVN 210 (506)
T ss_pred CCCHHHHHHHHhccHHHHHHHHHcCceEeec------ccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHc-CCeEEeC
Confidence 0 00011111000 0000 0000 000000111234777888888877 6788777
Q ss_pred e-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccchhhc
Q 010623 184 T-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSL 229 (506)
Q Consensus 184 ~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l 229 (506)
+ ++++..+++++.+|.+...+|+..+++|+.||.|+|.++...+++
T Consensus 211 t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~ 257 (506)
T PRK06481 211 ADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMI 257 (506)
T ss_pred CeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHH
Confidence 5 999988888898998877776666799999999999998765444
No 74
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.39 E-value=2.1e-12 Score=124.27 Aligned_cols=145 Identities=26% Similarity=0.306 Sum_probs=91.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc---ccccc---cc-hHHHHHHh--------------Cc
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV---GELLQ---PG-GYLKLIEL--------------GL 117 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~---g~~l~---~~-~~~~l~~~--------------g~ 117 (506)
+.+||+|||||||||.||..++++|.+|+|+|+.+....+.. |...+ .. --+++.+. .-
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 358999999999999999999999999999999987654321 11111 00 11122221 11
Q ss_pred hhHHhhcccceecceEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEE
Q 010623 118 EDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIK 196 (506)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~ 196 (506)
+|.+.-+ ...++..+..... .-||. .-.-..+.++|..++++. +|+++..+ |.++..++.
T Consensus 82 ~d~i~~~---e~~Gi~~~e~~~G--r~Fp~----------sdkA~~Iv~~ll~~~~~~-gV~i~~~~~v~~v~~~~~--- 142 (408)
T COG2081 82 EDFIDWV---EGLGIALKEEDLG--RMFPD----------SDKASPIVDALLKELEAL-GVTIRTRSRVSSVEKDDS--- 142 (408)
T ss_pred HHHHHHH---HhcCCeeEEccCc--eecCC----------ccchHHHHHHHHHHHHHc-CcEEEecceEEeEEecCc---
Confidence 2211111 1122222211110 01111 012246889999999998 88888875 999998874
Q ss_pred EEEEEeCCccEEEEEcCeEEeecCCccc
Q 010623 197 GVQYKTKAGEELTAYAPLTIVCDGCFSN 224 (506)
Q Consensus 197 ~v~v~~~~G~~~~i~a~~vV~AdG~~S~ 224 (506)
+..+.+.+|+ +++||.+|.|+|+.|.
T Consensus 143 ~f~l~t~~g~--~i~~d~lilAtGG~S~ 168 (408)
T COG2081 143 GFRLDTSSGE--TVKCDSLILATGGKSW 168 (408)
T ss_pred eEEEEcCCCC--EEEccEEEEecCCcCC
Confidence 4667788886 4779999999998883
No 75
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.37 E-value=1.4e-11 Score=127.58 Aligned_cols=149 Identities=21% Similarity=0.277 Sum_probs=93.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC-CCCccccccccc----chHHHHHHhCc-h-hHHhhcccceecc
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS-EPDRIVGELLQP----GGYLKLIELGL-E-DCVEQIDAQRVFG 131 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~-~~~~~~g~~l~~----~~~~~l~~~g~-~-~~~~~~~~~~~~~ 131 (506)
.++||+|||||+||+.||+.+++.|.+|+|+|++.. ....++...+.. ...+.++.+|- . ...... ...
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~----giq 78 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKT----GIQ 78 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhc----cCc
Confidence 369999999999999999999999999999999742 111111111111 11122233331 1 111110 001
Q ss_pred eEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEE
Q 010623 132 YALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAY 211 (506)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~ 211 (506)
+...+..+... .......+++..+...|.+.+.+.+++++..++|+++..+++++.+|.. .+|. .++
T Consensus 79 ~r~ln~skGpA---------V~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t--~dG~--~I~ 145 (618)
T PRK05192 79 FRMLNTSKGPA---------VRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVT--QDGL--EFR 145 (618)
T ss_pred eeecccCCCCc---------eeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEE--CCCC--EEE
Confidence 11111100000 0001125788888999999998888899988889999888888777764 5675 477
Q ss_pred cCeEEeecCCccc
Q 010623 212 APLTIVCDGCFSN 224 (506)
Q Consensus 212 a~~vV~AdG~~S~ 224 (506)
|+.||+|||.++.
T Consensus 146 Ak~VIlATGTFL~ 158 (618)
T PRK05192 146 AKAVVLTTGTFLR 158 (618)
T ss_pred CCEEEEeeCcchh
Confidence 9999999998874
No 76
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.35 E-value=3e-10 Score=121.13 Aligned_cols=73 Identities=23% Similarity=0.381 Sum_probs=57.1
Q ss_pred cccchHHHHHHHHHHHcCCCEEEEec-eEEEEEee--CCeEEEEEEEeC-CccEEEEEcCeEEeecCCccc-chhhccC
Q 010623 158 GFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEE--KGTIKGVQYKTK-AGEELTAYAPLTIVCDGCFSN-LRRSLCN 231 (506)
Q Consensus 158 ~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~--~~~v~~v~v~~~-~G~~~~i~a~~vV~AdG~~S~-vR~~l~~ 231 (506)
.++...+...|.+.+.+. |+++++. +|+++..+ ++++.+|++.+. +|+.++++||.||+|+|+||. +++.++.
T Consensus 228 ~vdp~rl~~al~~~A~~~-Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g~ 305 (627)
T PLN02464 228 QMNDSRLNVALACTAALA-GAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMADG 305 (627)
T ss_pred EEcHHHHHHHHHHHHHhC-CcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhccC
Confidence 467778999999999988 6777766 69998876 467777887653 565567899999999999984 7776653
No 77
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.34 E-value=2e-11 Score=119.98 Aligned_cols=147 Identities=27% Similarity=0.349 Sum_probs=90.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEE-ecCCCCCCcccccccccch----HHHHHHhCchhHHhhcccceecceEEEE
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVI-ERDLSEPDRIVGELLQPGG----YLKLIELGLEDCVEQIDAQRVFGYALFK 136 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vv-E~~~~~~~~~~g~~l~~~~----~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 136 (506)
||+|||||.||+.||+.+|+.|.+|+|+ ++.+.....++...+...+ .+.++.+|-. +..........+.+.+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~--m~~~aD~~~i~~~~lN 78 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGL--MGRAADETGIHFRMLN 78 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-S--HHHHHHHHEEEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhH--HHHHHhHhhhhhhccc
Confidence 8999999999999999999999999999 3333333333333332222 2333444411 1111000111111111
Q ss_pred CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623 137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI 216 (506)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV 216 (506)
..+. .........++|..+.+.+.+.+.+.+++++..++|+++..+++++.+|. +.+|+ ++.||.||
T Consensus 79 ~skG---------pav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~--~~~g~--~~~a~~vV 145 (392)
T PF01134_consen 79 RSKG---------PAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVV--TKDGE--EIEADAVV 145 (392)
T ss_dssp TTS----------GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEE--ETTSE--EEEECEEE
T ss_pred ccCC---------CCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEE--eCCCC--EEecCEEE
Confidence 1100 00111223689999999999999999999999989999999999998876 56786 46799999
Q ss_pred eecCCcc
Q 010623 217 VCDGCFS 223 (506)
Q Consensus 217 ~AdG~~S 223 (506)
.|+|.+.
T Consensus 146 laTGtfl 152 (392)
T PF01134_consen 146 LATGTFL 152 (392)
T ss_dssp E-TTTGB
T ss_pred Eeccccc
Confidence 9999954
No 78
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.33 E-value=3.8e-10 Score=114.20 Aligned_cols=167 Identities=24% Similarity=0.273 Sum_probs=93.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC--cc--ccccccc----chH--HHHHHhCchhHHhhcc---cc
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD--RI--VGELLQP----GGY--LKLIELGLEDCVEQID---AQ 127 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~--~~--~g~~l~~----~~~--~~l~~~g~~~~~~~~~---~~ 127 (506)
+||+|||||++|+++|+.|+++|.+|+|+|+...... .+ .+..+.. ... ...+.+.++..+.+.. ..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~ 80 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPMMLECYQLWAQLEKEAGTKLH 80 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCCCCCCCCeeeeeccCchhHhHHHHHHHHHHHHHHHHhCCeeE
Confidence 6999999999999999999999999999999753211 11 1111110 001 1112223333332110 00
Q ss_pred eecceEEEE-CCc-----------------------eeeeecCCcCCCC------CcccccccchHHHHHHHHHHHcCCC
Q 010623 128 RVFGYALFK-DGN-----------------------RTQISYPLEKFHS------DVAGRGFHNGRFVQRLREKAASLPN 177 (506)
Q Consensus 128 ~~~~~~~~~-~~~-----------------------~~~~~~~~~~~~~------~~~~~~i~~~~l~~~L~~~~~~~~~ 177 (506)
...+..... ... .....+|.-.... .+.+..++...+.+.|.+.+.+. +
T Consensus 81 ~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~~~~-g 159 (380)
T TIGR01377 81 RQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQELAEAH-G 159 (380)
T ss_pred eecCeEEEcCCCcHHHHHHHHHHHHcCCCeEEcCHHHHHHhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHHHHHHc-C
Confidence 111111111 000 0000011000000 12234567778889999888887 6
Q ss_pred EEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCc-ccchhhccCCCC
Q 010623 178 VRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCF-SNLRRSLCNPKV 234 (506)
Q Consensus 178 v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~-S~vR~~l~~~~~ 234 (506)
++++.+ +|+++..+++.+ .+.+.+| +++||.||.|+|.+ +.+++.++...+
T Consensus 160 ~~~~~~~~V~~i~~~~~~~---~v~~~~~---~i~a~~vV~aaG~~~~~l~~~~g~~~~ 212 (380)
T TIGR01377 160 ATVRDGTKVVEIEPTELLV---TVKTTKG---SYQANKLVVTAGAWTSKLLSPLGIEIP 212 (380)
T ss_pred CEEECCCeEEEEEecCCeE---EEEeCCC---EEEeCEEEEecCcchHHHhhhcccCCC
Confidence 777777 599998776643 3445555 36799999999987 567877765433
No 79
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.33 E-value=2.4e-11 Score=121.61 Aligned_cols=70 Identities=29% Similarity=0.379 Sum_probs=52.5
Q ss_pred cccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccc-hhhccC
Q 010623 156 GRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNL-RRSLCN 231 (506)
Q Consensus 156 ~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~v-R~~l~~ 231 (506)
+..++...+.+.|.+.+++. |++++.+ +|+++..+++++.+|. +++|+ ++||.||.|+|.+|.. .+.++.
T Consensus 141 ~g~i~~~~l~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~v~gv~--~~~g~---i~ad~vV~a~G~~s~~l~~~~~~ 212 (358)
T PF01266_consen 141 GGVIDPRRLIQALAAEAQRA-GVEIRTGTEVTSIDVDGGRVTGVR--TSDGE---IRADRVVLAAGAWSPQLLPLLGL 212 (358)
T ss_dssp EEEEEHHHHHHHHHHHHHHT-T-EEEESEEEEEEEEETTEEEEEE--ETTEE---EEECEEEE--GGGHHHHHHTTTT
T ss_pred cccccccchhhhhHHHHHHh-hhhccccccccchhhccccccccc--ccccc---cccceeEecccccceeeeecccc
Confidence 44567789999999999998 7899888 6999999999755454 67774 6799999999999854 444443
No 80
>PRK07121 hypothetical protein; Validated
Probab=99.29 E-value=1.1e-10 Score=121.99 Aligned_cols=66 Identities=26% Similarity=0.418 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHcCCCEEEEece-EEEEEee-CCeEEEEEEEeCCccEEEEEc-CeEEeecCCcccchhhc
Q 010623 162 GRFVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYKTKAGEELTAYA-PLTIVCDGCFSNLRRSL 229 (506)
Q Consensus 162 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~~v~v~~~~G~~~~i~a-~~vV~AdG~~S~vR~~l 229 (506)
..+...|.+.+++. +++++.++ ++++..+ ++++.+|.+.. +++..+++| +.||.|+|.++.-++++
T Consensus 177 ~~~~~~L~~~~~~~-gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-~~~~~~i~a~k~VVlAtGg~~~N~em~ 245 (492)
T PRK07121 177 AMLMDPLAKRAAAL-GVQIRYDTRATRLIVDDDGRVVGVEARR-YGETVAIRARKGVVLAAGGFAMNREMV 245 (492)
T ss_pred HHHHHHHHHHHHhC-CCEEEeCCEEEEEEECCCCCEEEEEEEe-CCcEEEEEeCCEEEECCCCcCcCHHHH
Confidence 35778888888887 67877774 9999876 46888888754 555567889 99999999999755444
No 81
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.29 E-value=9.3e-11 Score=123.50 Aligned_cols=74 Identities=19% Similarity=0.190 Sum_probs=57.4
Q ss_pred ccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCccc-chhhccC
Q 010623 157 RGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSN-LRRSLCN 231 (506)
Q Consensus 157 ~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~-vR~~l~~ 231 (506)
..++...+...+...+.++ |+++.++ +|+++..+++++++|++.+ .+|+..+++|+.||.|+|.||. +.++.+.
T Consensus 144 g~vdp~rl~~al~~~A~~~-Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~ 220 (546)
T PRK11101 144 GTVDPFRLTAANMLDAKEH-GAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADL 220 (546)
T ss_pred cEECHHHHHHHHHHHHHhC-CCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcCC
Confidence 3567778888888888888 6677666 5999998888888888765 3555567899999999999984 5555554
No 82
>PLN02661 Putative thiazole synthesis
Probab=99.28 E-value=8.5e-11 Score=113.82 Aligned_cols=136 Identities=26% Similarity=0.324 Sum_probs=88.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCCccc--ccccc-----cchHHHHHHhCchhHHhhcccceec
Q 010623 59 FDADVIVVGAGVAGAALANTLAKD-GRRVHVIERDLSEPDRIV--GELLQ-----PGGYLKLIELGLEDCVEQIDAQRVF 130 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~-G~~v~vvE~~~~~~~~~~--g~~l~-----~~~~~~l~~~g~~~~~~~~~~~~~~ 130 (506)
.++||+|||||++|+++|+.|++. |++|+|+||......... +..++ ....+.|+++|+.- .. ..
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~f--d~-----~d 163 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPY--DE-----QE 163 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCc--cc-----CC
Confidence 468999999999999999999986 899999999865432111 11111 11233444444320 00 00
Q ss_pred ceEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEE------eC
Q 010623 131 GYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYK------TK 203 (506)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~------~~ 203 (506)
++ ....+...+...|.+.+.+.++++++++. ++++..+++++.||.+. ..
T Consensus 164 gy-----------------------~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~ 220 (357)
T PLN02661 164 NY-----------------------VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNH 220 (357)
T ss_pred Ce-----------------------eEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhcc
Confidence 00 00112235567888877776789999885 99999888888888752 11
Q ss_pred -Cc---cEEEEEcCeEEeecCCccc
Q 010623 204 -AG---EELTAYAPLTIVCDGCFSN 224 (506)
Q Consensus 204 -~G---~~~~i~a~~vV~AdG~~S~ 224 (506)
++ +...++|+.||.|+|..++
T Consensus 221 ~~~s~~dp~~I~AkaVVlATGh~g~ 245 (357)
T PLN02661 221 DTQSCMDPNVMEAKVVVSSCGHDGP 245 (357)
T ss_pred CCCCccceeEEECCEEEEcCCCCCc
Confidence 11 3346899999999996654
No 83
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.27 E-value=2.1e-12 Score=132.12 Aligned_cols=153 Identities=26% Similarity=0.228 Sum_probs=36.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccc---cccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGEL---LQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG 138 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~---l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 138 (506)
|||||||||+|++||+.+++.|.+|+|+||.+.......... +..........-|+..++.+.... ..... ....
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~-~~~~~-~~~~ 78 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRA-RGGYP-QEDR 78 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhh-hcccc-cccc
Confidence 899999999999999999999999999999976543322211 111111111122344333331111 00000 0000
Q ss_pred ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623 139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV 217 (506)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~ 217 (506)
. .......+++..+...|.+.+.+. +++++.++ |+++..+++++.+|++.+.+| ..+++|+++|+
T Consensus 79 ----~--------~~~~~~~~~~~~~~~~l~~~l~e~-gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g-~~~i~A~~~ID 144 (428)
T PF12831_consen 79 ----Y--------GWVSNVPFDPEVFKAVLDEMLAEA-GVEVLLGTRVVDVIRDGGRITGVIVETKSG-RKEIRAKVFID 144 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----c--------cccccccccccccccccccccccc-cccccccccccccccccccccccccccccc-ccccccccccc
Confidence 0 000012355566677777777664 89998886 999999998999999987777 56899999999
Q ss_pred ecCCcccchhhccC
Q 010623 218 CDGCFSNLRRSLCN 231 (506)
Q Consensus 218 AdG~~S~vR~~l~~ 231 (506)
|+|- +.+-...|.
T Consensus 145 aTG~-g~l~~~aG~ 157 (428)
T PF12831_consen 145 ATGD-GDLAALAGA 157 (428)
T ss_dssp --------------
T ss_pred cccc-ccccccccc
Confidence 9994 445444444
No 84
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.26 E-value=7.8e-11 Score=121.47 Aligned_cols=166 Identities=22% Similarity=0.280 Sum_probs=94.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CcEEEEecCCCCCCcc--cccccccchHHHHHHhCchhHHhhc--------------
Q 010623 62 DVIVVGAGVAGAALANTLAKDG-RRVHVIERDLSEPDRI--VGELLQPGGYLKLIELGLEDCVEQI-------------- 124 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G-~~v~vvE~~~~~~~~~--~g~~l~~~~~~~l~~~g~~~~~~~~-------------- 124 (506)
||||||||++|+++|+.++++| .+|+|+||.+.....+ .+..+........+..|+.+....+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 8999999999999999999999 9999999987543221 1222222222222222322111100
Q ss_pred ------ccceecceEEEEC-Cceeeeec---C-CcCCCC--CcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEe
Q 010623 125 ------DAQRVFGYALFKD-GNRTQISY---P-LEKFHS--DVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLE 190 (506)
Q Consensus 125 ------~~~~~~~~~~~~~-~~~~~~~~---~-~~~~~~--~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~ 190 (506)
.......+. |.. +-...... . ...... .+.........+...|.+.+++. +++++.++ ++++..
T Consensus 81 ~l~~~~~~~~~~~i~-wl~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~-gv~i~~~~~v~~l~~ 158 (439)
T TIGR01813 81 ELVRILAEESADAVD-WLQDGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKE-GIDTRLNSKVEDLIQ 158 (439)
T ss_pred HHHHHHHhccHHHHH-HHHhCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHc-CCEEEeCCEeeEeEE
Confidence 000000000 000 00000000 0 000000 00001122346888899988887 67888774 999987
Q ss_pred e-CCeEEEEEEEeCCccEEEEEcCeEEeecCCcccchhhc
Q 010623 191 E-KGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSL 229 (506)
Q Consensus 191 ~-~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l 229 (506)
+ ++++++|++.+.+++...+.++.||.|+|.++...+++
T Consensus 159 ~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~ 198 (439)
T TIGR01813 159 DDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMI 198 (439)
T ss_pred CCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHH
Confidence 5 56788888877777656678999999999999754443
No 85
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.25 E-value=1.1e-10 Score=117.29 Aligned_cols=144 Identities=29% Similarity=0.346 Sum_probs=76.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc----c------------cccc------cchHHHHHHhCch
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV----G------------ELLQ------PGGYLKLIELGLE 118 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~----g------------~~l~------~~~~~~l~~~g~~ 118 (506)
|||+|||||||||+||+.|++.|.+|+|+||++....+.. | .... .-....|++++..
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 7999999999999999999999999999999976543110 0 0000 0112344455444
Q ss_pred hHHhhcccceecceEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEE
Q 010623 119 DCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKG 197 (506)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~ 197 (506)
+.+.-+. ..++........ ..||. .-.-..+.++|++.+.+. +++++.++ |.++..+++++..
T Consensus 81 d~~~ff~---~~Gv~~~~~~~g--r~fP~----------s~~a~~Vv~~L~~~l~~~-gv~i~~~~~V~~i~~~~~~~f~ 144 (409)
T PF03486_consen 81 DLIAFFE---ELGVPTKIEEDG--RVFPK----------SDKASSVVDALLEELKRL-GVEIHFNTRVKSIEKKEDGVFG 144 (409)
T ss_dssp HHHHHHH---HTT--EEE-STT--EEEET----------T--HHHHHHHHHHHHHHH-T-EEE-S--EEEEEEETTEEEE
T ss_pred HHHHHHH---hcCCeEEEcCCC--EECCC----------CCcHHHHHHHHHHHHHHc-CCEEEeCCEeeeeeecCCceeE
Confidence 3332211 122222111000 01111 112246788999999887 88998885 9999988886444
Q ss_pred EEEEeCCccEEEEEcCeEEeecCCccc
Q 010623 198 VQYKTKAGEELTAYAPLTIVCDGCFSN 224 (506)
Q Consensus 198 v~v~~~~G~~~~i~a~~vV~AdG~~S~ 224 (506)
|. .++++ ++.||.||.|+|+.|.
T Consensus 145 v~--~~~~~--~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 145 VK--TKNGG--EYEADAVILATGGKSY 167 (409)
T ss_dssp EE--ETTTE--EEEESEEEE----SSS
T ss_pred ee--ccCcc--cccCCEEEEecCCCCc
Confidence 44 44444 4679999999998873
No 86
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.25 E-value=7.2e-11 Score=122.68 Aligned_cols=67 Identities=25% Similarity=0.313 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccchhhc
Q 010623 162 GRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSL 229 (506)
Q Consensus 162 ~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l 229 (506)
..+...|.+.+++. +++++.+ +|+++..+++++++|.+...+|+..+++|+.||.|+|.++..++++
T Consensus 131 ~~l~~~l~~~~~~~-gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~ 198 (466)
T PRK08274 131 KALVNALYRSAERL-GVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNREWL 198 (466)
T ss_pred HHHHHHHHHHHHHC-CCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCCCCHHHH
Confidence 35778888888887 6788777 5999988888888888765667666789999999999988765544
No 87
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.25 E-value=1.4e-09 Score=109.87 Aligned_cols=60 Identities=18% Similarity=0.121 Sum_probs=45.1
Q ss_pred cccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCccc
Q 010623 158 GFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN 224 (506)
Q Consensus 158 ~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~ 224 (506)
.++...+...+.+.+.+. +++++.+ +|+++..+++. +.+.+++| +++||.||.|+|.++.
T Consensus 145 ~v~p~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~---~~v~~~~g---~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 145 FLRPELAIKAHLRLAREA-GAELLFNEPVTAIEADGDG---VTVTTADG---TYEAKKLVVSAGAWVK 205 (376)
T ss_pred EEcHHHHHHHHHHHHHHC-CCEEECCCEEEEEEeeCCe---EEEEeCCC---EEEeeEEEEecCcchh
Confidence 456667777788777776 7788766 59999887663 44556666 3679999999999874
No 88
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.25 E-value=7.9e-11 Score=120.73 Aligned_cols=63 Identities=27% Similarity=0.403 Sum_probs=51.8
Q ss_pred chHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCccc
Q 010623 161 NGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSN 224 (506)
Q Consensus 161 ~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~ 224 (506)
-..+...|.+.+++. +++++.++ ++++..++++|+||.+.+ .+|+.++++|+.||.|+|.++.
T Consensus 140 g~~~~~~l~~~~~~~-gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 140 GKALIEALAKAAEEA-GVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHT-TEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHHhhc-CeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 456888999999998 59999886 999999999999999984 6788888999999999999996
No 89
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.24 E-value=1.1e-09 Score=112.16 Aligned_cols=61 Identities=36% Similarity=0.419 Sum_probs=45.3
Q ss_pred cccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCccc
Q 010623 158 GFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN 224 (506)
Q Consensus 158 ~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~ 224 (506)
.++...+...|.+.+.+. |++++.+ +|++++.+++++.+|+ ++++ +++||.||.|+|.+|.
T Consensus 197 ~~~p~~~~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~v~--t~~~---~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 197 TGDCQLFTQRLAAMAEQL-GVKFRFNTPVDGLLVEGGRITGVQ--TGGG---VITADAYVVALGSYST 258 (416)
T ss_pred cCCHHHHHHHHHHHHHHC-CCEEEcCCEEEEEEecCCEEEEEE--eCCc---EEeCCEEEECCCcchH
Confidence 345557888888888887 6777776 5999988777654343 4444 3679999999999984
No 90
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.24 E-value=1.8e-09 Score=110.30 Aligned_cols=110 Identities=16% Similarity=0.051 Sum_probs=61.6
Q ss_pred cccchHHHHHHHHHHHcCCCEEEEec-eEEEEEee-CCeEEEEEEEeCCccEEEEEcCeEEeecCCcc-cchhhccCCCC
Q 010623 158 GFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEE-KGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS-NLRRSLCNPKV 234 (506)
Q Consensus 158 ~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~-~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S-~vR~~l~~~~~ 234 (506)
.++...+...|.+.+.+. |+++..+ +|+++..+ ++++.+ +.+.+|+ ++|+.||.|.|+++ .+++.++...+
T Consensus 179 ~v~p~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~~~--v~t~~g~---i~a~~vVvaagg~~~~l~~~~g~~~~ 252 (407)
T TIGR01373 179 TARHDAVAWGYARGADRR-GVDIIQNCEVTGFIRRDGGRVIG--VETTRGF---IGAKKVGVAVAGHSSVVAAMAGFRLP 252 (407)
T ss_pred cCCHHHHHHHHHHHHHHC-CCEEEeCCEEEEEEEcCCCcEEE--EEeCCce---EECCEEEECCChhhHHHHHHcCCCCC
Confidence 445566777888888887 6777776 69999754 454433 3455663 67987766666565 67777665433
Q ss_pred CCccceeeEEEeccCCCCCCeeEEEecCCCcEEEEecCCCeE
Q 010623 235 DVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEV 276 (506)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 276 (506)
........++ .. ..+.. ...++..+...+++.|..+++.
T Consensus 253 ~~~~~~~~~~-~~-~~~~~-~~~~~~~~~~~~y~~p~~~g~~ 291 (407)
T TIGR01373 253 IESHPLQALV-SE-PLKPI-IDTVVMSNAVHFYVSQSDKGEL 291 (407)
T ss_pred cCcccceEEE-ec-CCCCC-cCCeEEeCCCceEEEEcCCceE
Confidence 2222222122 21 11111 1112333445567778776643
No 91
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.23 E-value=2.5e-09 Score=109.43 Aligned_cols=70 Identities=26% Similarity=0.276 Sum_probs=47.2
Q ss_pred ccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCcc-EEEEEcCeEEeecCCccc-chhhcc
Q 010623 159 FHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGE-ELTAYAPLTIVCDGCFSN-LRRSLC 230 (506)
Q Consensus 159 i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~-~~~i~a~~vV~AdG~~S~-vR~~l~ 230 (506)
++...+...|.+.+.+. |++++++ +|+++..+++.+. +.+.+.++. ..+++||.||.|+|.+|. +.+.++
T Consensus 194 ~~~~~~~~~l~~~a~~~-G~~i~~~~~V~~i~~~~~~~~-v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~ 266 (410)
T PRK12409 194 GDIHKFTTGLAAACARL-GVQFRYGQEVTSIKTDGGGVV-LTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLG 266 (410)
T ss_pred cCHHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEeCCEEE-EEEEcCCCCccceEecCEEEECCCcChHHHHHHhC
Confidence 34456778888888888 6788776 5999987776543 433332210 124779999999999984 444444
No 92
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.21 E-value=7e-10 Score=112.67 Aligned_cols=69 Identities=22% Similarity=0.181 Sum_probs=52.0
Q ss_pred ccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcc-cchhhccCC
Q 010623 157 RGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS-NLRRSLCNP 232 (506)
Q Consensus 157 ~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S-~vR~~l~~~ 232 (506)
..++...+.+.|.+.+.+. |++++.+ +|+++..++++ +.+.+.+| +++||.||.|+|.+| .+.+.++.+
T Consensus 144 g~vd~~~l~~aL~~~~~~~-Gv~i~~~~~V~~i~~~~~~---~~V~~~~g---~i~ad~vV~A~G~~s~~l~~~~g~~ 214 (393)
T PRK11728 144 GIVDYRAVAEAMAELIQAR-GGEIRLGAEVTALDEHANG---VVVRTTQG---EYEARTLINCAGLMSDRLAKMAGLE 214 (393)
T ss_pred eEECHHHHHHHHHHHHHhC-CCEEEcCCEEEEEEecCCe---EEEEECCC---EEEeCEEEECCCcchHHHHHHhCCC
Confidence 4567788999999999887 6777777 59998877664 34445555 367999999999999 466666654
No 93
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.19 E-value=3.5e-10 Score=116.96 Aligned_cols=77 Identities=19% Similarity=0.187 Sum_probs=56.1
Q ss_pred cccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEE-eCCccEEEEEcCeEEeecCCcc-cchhhccCC
Q 010623 156 GRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYK-TKAGEELTAYAPLTIVCDGCFS-NLRRSLCNP 232 (506)
Q Consensus 156 ~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~-~~~G~~~~i~a~~vV~AdG~~S-~vR~~l~~~ 232 (506)
...++...+...|.+.+.+. |++++++ +|+++.+++++.+.+++. ..+|+..+++||+||.|.|.+| .+++.++++
T Consensus 172 ~g~Vdp~~l~~aL~~~a~~~-Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~ 250 (483)
T TIGR01320 172 GTDVDFGALTKQLLGYLVQN-GTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIP 250 (483)
T ss_pred CEEECHHHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCC
Confidence 34577888999999999887 7788877 599998765432224433 2445444688999999999988 678888776
Q ss_pred C
Q 010623 233 K 233 (506)
Q Consensus 233 ~ 233 (506)
.
T Consensus 251 ~ 251 (483)
T TIGR01320 251 E 251 (483)
T ss_pred c
Confidence 3
No 94
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.18 E-value=4.6e-10 Score=116.15 Aligned_cols=77 Identities=22% Similarity=0.223 Sum_probs=56.3
Q ss_pred cccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEE-eCCccEEEEEcCeEEeecCCcc-cchhhccCC
Q 010623 156 GRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYK-TKAGEELTAYAPLTIVCDGCFS-NLRRSLCNP 232 (506)
Q Consensus 156 ~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~-~~~G~~~~i~a~~vV~AdG~~S-~vR~~l~~~ 232 (506)
+..++...+.+.|.+.+++.++++++.++ |+++..++++.+.+++. ..+|+..+++|++||.|.|++| .+++.++++
T Consensus 177 ~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~ 256 (494)
T PRK05257 177 GTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIP 256 (494)
T ss_pred ceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence 34677889999999999988668888874 99998755532224443 2445434578999999999987 577777765
No 95
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.18 E-value=5.3e-10 Score=118.81 Aligned_cols=64 Identities=20% Similarity=0.353 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccchh
Q 010623 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNLRR 227 (506)
Q Consensus 163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~vR~ 227 (506)
.+...|.+.+.+. +++++.++ ++++..+++++.||.+.+ .+|+...++|+.||.|+|++|.+..
T Consensus 130 ~i~~~L~~~~~~~-gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~~ 195 (566)
T TIGR01812 130 ALLHTLYEQCLKL-GVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIYK 195 (566)
T ss_pred HHHHHHHHHHHHc-CCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcccCCCC
Confidence 4677888888877 78888775 999998888898888754 5677667899999999999997654
No 96
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.17 E-value=1.9e-10 Score=121.59 Aligned_cols=67 Identities=19% Similarity=0.228 Sum_probs=49.4
Q ss_pred HHHHHHHHHHH---cCCCEEEEece-EEEEEeeCCeEEEEEEEe--C------------CccEEEEEcCeEEeecCCccc
Q 010623 163 RFVQRLREKAA---SLPNVRLEQGT-VTSLLEEKGTIKGVQYKT--K------------AGEELTAYAPLTIVCDGCFSN 224 (506)
Q Consensus 163 ~l~~~L~~~~~---~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~--~------------~G~~~~i~a~~vV~AdG~~S~ 224 (506)
.+...|.+.++ +.++++++.++ ++++..++++|+||.+.+ . +++.+++.|+.||.|+|.++.
T Consensus 149 ~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~ 228 (549)
T PRK12834 149 GVVEPFERRVREAAARGLVRFRFRHRVDELVVTDGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIGG 228 (549)
T ss_pred HHHHHHHHHHHHHHHhCCceEEecCEeeEEEEeCCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCccc
Confidence 35566666554 34568988885 999998888999998642 1 123457899999999999998
Q ss_pred chhhc
Q 010623 225 LRRSL 229 (506)
Q Consensus 225 vR~~l 229 (506)
.++++
T Consensus 229 n~em~ 233 (549)
T PRK12834 229 NHELV 233 (549)
T ss_pred CHHHH
Confidence 76654
No 97
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.17 E-value=5.9e-10 Score=118.67 Aligned_cols=157 Identities=18% Similarity=0.213 Sum_probs=92.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCCCccccc---ccc----cc-hHH-HHH---Hh--Cchh--H
Q 010623 59 FDADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLSEPDRIVGE---LLQ----PG-GYL-KLI---EL--GLED--C 120 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~~~~~~~g~---~l~----~~-~~~-~l~---~~--g~~~--~ 120 (506)
.++||+|||||+|||+||+.+++. |.+|+|+||.+.......+. .++ .. ..+ .++ +. ++.+ .
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~l 89 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDL 89 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHH
Confidence 358999999999999999999998 99999999986432211111 111 10 111 111 01 1100 0
Q ss_pred Hhhc--------ccceecceEEEEC--CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEE
Q 010623 121 VEQI--------DAQRVFGYALFKD--GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLL 189 (506)
Q Consensus 121 ~~~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~ 189 (506)
+..+ ......++.+... +.. +. .......+....+...|.+.+.+.++++++.++ ++++.
T Consensus 90 v~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~----~~-----~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li 160 (608)
T PRK06854 90 VYDIARHVDSVVHLFEEWGLPIWKDENGKY----VR-----RGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLL 160 (608)
T ss_pred HHHHHHhHHHHHHHHHHcCCeeeecCCCCc----cc-----cCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEE
Confidence 0000 0001122222211 110 00 000000123345778888888887668888885 99998
Q ss_pred eeCCeEEEEEEE-eCCccEEEEEcCeEEeecCCccc
Q 010623 190 EEKGTIKGVQYK-TKAGEELTAYAPLTIVCDGCFSN 224 (506)
Q Consensus 190 ~~~~~v~~v~v~-~~~G~~~~i~a~~vV~AdG~~S~ 224 (506)
.+++++.||.+. ..+|+..+++|+.||.|+|+++.
T Consensus 161 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 161 VDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred EeCCEEEEEEEEEccCCcEEEEECCEEEECCCchhh
Confidence 777888888753 35676667899999999999885
No 98
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.17 E-value=6e-10 Score=117.85 Aligned_cols=64 Identities=19% Similarity=0.252 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623 162 GRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL 225 (506)
Q Consensus 162 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v 225 (506)
..+...|.+.+.+.++++++.++ ++++..+++++.||.+.+ .+|+...++|+.||.|||++|.+
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 35788888888776688888775 999998888999988654 57877789999999999999965
No 99
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.17 E-value=7.1e-10 Score=115.55 Aligned_cols=65 Identities=26% Similarity=0.344 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccchh
Q 010623 162 GRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRR 227 (506)
Q Consensus 162 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~ 227 (506)
..+...|.+.+.+.++++++.++ ++++..+++++.++.+.+. ++...++|+.||.|+|++|.+..
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~-~~~~~i~A~~VVlAtGG~~~~~~ 193 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNR-ETVETCHADAVVLATGGAGKLYQ 193 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEEC-CcEEEEEcCEEEECCCcccCCCC
Confidence 46888899988875689998885 9999887788888877655 44456889999999999998654
No 100
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.17 E-value=5.3e-10 Score=114.48 Aligned_cols=161 Identities=19% Similarity=0.264 Sum_probs=89.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc--cccccc-----chHHHHHHh---Cc---h-hHHhhc
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV--GELLQP-----GGYLKLIEL---GL---E-DCVEQI 124 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~--g~~l~~-----~~~~~l~~~---g~---~-~~~~~~ 124 (506)
.++||||||+|.|||+||+.++ .|.+|+|+||.+.....+. +..+.. .....++.+ +- . +.+..+
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~~lv~~~ 81 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNLEAVKIL 81 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 4689999999999999999985 7999999999865433211 111110 001111110 10 0 000000
Q ss_pred --------ccceecceEEEECCceeeeecCCcCCCCCcccccc-----cchHHHHHHHHHHHcCCCEEEEece-EEEEEe
Q 010623 125 --------DAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGF-----HNGRFVQRLREKAASLPNVRLEQGT-VTSLLE 190 (506)
Q Consensus 125 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~ 190 (506)
......++.+...... ..+... ......+.+ .-..+...|.+.+.+..+++++.++ ++++..
T Consensus 82 ~~~s~e~i~wL~~~Gv~f~~~~~~--~~~~~~--g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~ 157 (433)
T PRK06175 82 ANESIENINKLIDMGLNFDKDEKE--LSYTKE--GAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIE 157 (433)
T ss_pred HHHHHHHHHHHHHcCCccccCCCc--eeeecc--CccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEe
Confidence 0000112222111100 001000 000000111 1235778888888765588998885 999988
Q ss_pred eCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccc
Q 010623 191 EKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNL 225 (506)
Q Consensus 191 ~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~v 225 (506)
+++++.+|.+.. +|+.++++|+.||.|+|+.+.+
T Consensus 158 ~~~~v~Gv~~~~-~g~~~~i~Ak~VILAtGG~~~l 191 (433)
T PRK06175 158 NDNTCIGAICLK-DNKQINIYSKVTILATGGIGGL 191 (433)
T ss_pred cCCEEEEEEEEE-CCcEEEEEcCeEEEccCccccc
Confidence 788888877654 4555578899999999998753
No 101
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.16 E-value=6.5e-10 Score=117.86 Aligned_cols=64 Identities=14% Similarity=0.266 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccch
Q 010623 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNLR 226 (506)
Q Consensus 163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~vR 226 (506)
.+...|.+.+.+.++++++..+ ++++..+++++.||.+.+ .+|+...++|+.||.|||++|.+-
T Consensus 134 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~ 199 (582)
T PRK09231 134 HMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVY 199 (582)
T ss_pred HHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCC
Confidence 5778888888776688888775 999998888898887643 677767899999999999999764
No 102
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.15 E-value=5.3e-10 Score=118.24 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeC-CccEEEEEcCeEEeecCCcccc
Q 010623 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTK-AGEELTAYAPLTIVCDGCFSNL 225 (506)
Q Consensus 163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~-~G~~~~i~a~~vV~AdG~~S~v 225 (506)
.+...|.+.+.+. ++++..++ ++++..++++|.||.+.+. +|+...++|+.||.|+|+++.+
T Consensus 137 ~i~~~L~~~~~~~-gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l 200 (566)
T PRK06452 137 ALLHTLFERTSGL-NVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGML 200 (566)
T ss_pred HHHHHHHHHHHhC-CCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccccc
Confidence 4677888888776 78888875 9999988899999988764 6666788999999999999854
No 103
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.13 E-value=1.3e-09 Score=112.94 Aligned_cols=154 Identities=21% Similarity=0.245 Sum_probs=94.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC-Cccccc---ccccc-hHHHHHHhCc-hhHHhhcccceecceEE
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP-DRIVGE---LLQPG-GYLKLIELGL-EDCVEQIDAQRVFGYAL 134 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~-~~~~g~---~l~~~-~~~~l~~~g~-~~~~~~~~~~~~~~~~~ 134 (506)
+||+|||||++|+.+|..+++.|.+|+|+|++.... ...+.. ++... ..+.++.+|- ...+... ....+..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~---~~i~~r~ 77 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADK---AGLQFRV 77 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHh---hceehee
Confidence 699999999999999999999999999999974321 111110 11111 1223333331 1111110 0011111
Q ss_pred EECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEee-CCeEEEEEEEeCCccEEEEEcC
Q 010623 135 FKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEE-KGTIKGVQYKTKAGEELTAYAP 213 (506)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~-~~~v~~v~v~~~~G~~~~i~a~ 213 (506)
.+..+. . ........+++..+...|.+.+.+.+++++..++|+++..+ ++++.+|.. .+|. .++|+
T Consensus 78 ln~skg--------p-AV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t--~~G~--~I~Ad 144 (617)
T TIGR00136 78 LNSSKG--------P-AVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVT--QDGL--KFRAK 144 (617)
T ss_pred cccCCC--------C-cccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEE--CCCC--EEECC
Confidence 111000 0 00111236788889999999999998999998888888765 666766664 5665 47799
Q ss_pred eEEeecCCcccchhhcc
Q 010623 214 LTIVCDGCFSNLRRSLC 230 (506)
Q Consensus 214 ~vV~AdG~~S~vR~~l~ 230 (506)
.||.|+|.++.-+-.+|
T Consensus 145 ~VILATGtfL~g~ihig 161 (617)
T TIGR00136 145 AVIITTGTFLRGKIHIG 161 (617)
T ss_pred EEEEccCcccCCCEEec
Confidence 99999999975444443
No 104
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.13 E-value=7.2e-10 Score=110.41 Aligned_cols=171 Identities=23% Similarity=0.278 Sum_probs=101.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCCccc---------ccccccchHH-HHHHhCch---hHHhh
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDG--RRVHVIERDLSEPDRIV---------GELLQPGGYL-KLIELGLE---DCVEQ 123 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G--~~v~vvE~~~~~~~~~~---------g~~l~~~~~~-~l~~~g~~---~~~~~ 123 (506)
.++||+|||||+.|+++|+.|++++ ++|+|+||......... |....++... -+...|-. +...+
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999999 99999999875443211 1112233111 11111110 00000
Q ss_pred cc--cceecceEE-EE-------------------------CCceeeeecCCcC-----CCCCcccccccchHHHHHHHH
Q 010623 124 ID--AQRVFGYAL-FK-------------------------DGNRTQISYPLEK-----FHSDVAGRGFHNGRFVQRLRE 170 (506)
Q Consensus 124 ~~--~~~~~~~~~-~~-------------------------~~~~~~~~~~~~~-----~~~~~~~~~i~~~~l~~~L~~ 170 (506)
.. ......+.+ +. +.......-|.-. ....+.+..++...+...|.+
T Consensus 82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e 161 (429)
T COG0579 82 LGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAE 161 (429)
T ss_pred hCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHH
Confidence 00 001111111 10 1000000001000 001234457788899999999
Q ss_pred HHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcc-cchhhccCCC
Q 010623 171 KAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS-NLRRSLCNPK 233 (506)
Q Consensus 171 ~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S-~vR~~l~~~~ 233 (506)
.+.++ |+.++++ +|+++++.++++ ..+.+.+|++. ++|+.||.|.|..| ++.+..+++.
T Consensus 162 ~a~~~-g~~i~ln~eV~~i~~~~dg~--~~~~~~~g~~~-~~ak~Vin~AGl~Ad~la~~~g~~~ 222 (429)
T COG0579 162 EAQAN-GVELRLNTEVTGIEKQSDGV--FVLNTSNGEET-LEAKFVINAAGLYADPLAQMAGIPE 222 (429)
T ss_pred HHHHc-CCEEEecCeeeEEEEeCCce--EEEEecCCcEE-EEeeEEEECCchhHHHHHHHhCCCc
Confidence 99998 6777777 599999987753 23445677654 78999999999999 6777777654
No 105
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.13 E-value=1.3e-09 Score=115.26 Aligned_cols=64 Identities=25% Similarity=0.277 Sum_probs=49.7
Q ss_pred HHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcC-eEEeecCCcccchhhc
Q 010623 164 FVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAP-LTIVCDGCFSNLRRSL 229 (506)
Q Consensus 164 l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~-~vV~AdG~~S~vR~~l 229 (506)
+...|.+.+++. ++++..++ ++++..++++|++|.+.. +|+..+++|+ .||.|+|+++.-++++
T Consensus 210 ~~~~L~~~~~~~-gv~v~~~t~v~~l~~~~g~v~Gv~~~~-~g~~~~i~A~~~VIlAtGG~~~n~~m~ 275 (557)
T PRK07843 210 LAAGLRIGLQRA-GVPVLLNTPLTDLYVEDGRVTGVHAAE-SGEPQLIRARRGVILASGGFEHNEQMR 275 (557)
T ss_pred HHHHHHHHHHcC-CCEEEeCCEEEEEEEeCCEEEEEEEEe-CCcEEEEEeceeEEEccCCcCcCHHHH
Confidence 556677777776 78888885 999998888999988764 5666778896 6999999998865543
No 106
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.12 E-value=1.4e-09 Score=116.24 Aligned_cols=59 Identities=22% Similarity=0.324 Sum_probs=48.0
Q ss_pred HHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeC-CccEEEEEcCeEEeecCCcccc
Q 010623 166 QRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTK-AGEELTAYAPLTIVCDGCFSNL 225 (506)
Q Consensus 166 ~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~-~G~~~~i~a~~vV~AdG~~S~v 225 (506)
+.|.+.+.+. ++++++++ ++++..++++|.||.+.+. +|+...+.|+.||.|+|+++.+
T Consensus 174 ~~L~~~~~~~-gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 174 QALSRQIAAG-TVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGNV 234 (640)
T ss_pred HHHHHHHHhc-CCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcccC
Confidence 5566667665 78888885 9999988889999988764 6776778999999999999875
No 107
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.12 E-value=1.3e-09 Score=115.79 Aligned_cols=169 Identities=25% Similarity=0.264 Sum_probs=94.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC---CcEEEEecCCCCCCccc--ccc----ccc---chHHH-----HHH-hCch--
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDG---RRVHVIERDLSEPDRIV--GEL----LQP---GGYLK-----LIE-LGLE-- 118 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G---~~v~vvE~~~~~~~~~~--g~~----l~~---~~~~~-----l~~-~g~~-- 118 (506)
.++||+|||||+|||+||+.+++.| .+|+|+||.+....... +.. +++ ...+. ++. -++.
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~d~ 83 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLADQ 83 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccCCH
Confidence 4689999999999999999999998 89999999864332211 111 111 11111 100 0110
Q ss_pred hHHhh--------cccceecceEEEE--CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEE
Q 010623 119 DCVEQ--------IDAQRVFGYALFK--DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTS 187 (506)
Q Consensus 119 ~~~~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~ 187 (506)
+.+.. +......++.+.. ++......+.............-.-..+...|.+.+.+..+++++.++ +++
T Consensus 84 ~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~~~~~v~~ 163 (577)
T PRK06069 84 DAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFVTS 163 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEEECCEEEE
Confidence 00000 0000112222221 111100111000000000000001134777888888765578888875 999
Q ss_pred EEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccchh
Q 010623 188 LLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNLRR 227 (506)
Q Consensus 188 ~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~vR~ 227 (506)
+..+++++.||.+.+ .+|+...++|+.||.|+|+.+.+..
T Consensus 164 Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~~ 204 (577)
T PRK06069 164 LIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRLYG 204 (577)
T ss_pred EEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhcccCC
Confidence 988888888887654 5776667899999999999987543
No 108
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.12 E-value=1.1e-09 Score=112.56 Aligned_cols=158 Identities=20% Similarity=0.243 Sum_probs=83.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG 138 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 138 (506)
...+|+||||||+||++|..|.+.|++|+|+||++.....- ...+.... ..+++.....................
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W---~~~~~~~~--d~~~~~~~~~~~~s~~Y~~L~tn~p~ 83 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLW---VYTPKSES--DPLSLDPTRSIVHSSVYESLRTNLPR 83 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCccee---ecCCCcCC--CccccCCCCcccchhhhhhhhccCCH
Confidence 45799999999999999999999999999999986532110 01111100 00111100000000000000000000
Q ss_pred ce-eeeecCCcC-C-CC-CcccccccchHHHHHHHHHHHcCCCEE--EEec-eEEEEEeeCCeEEEEEEEeCCccEEEEE
Q 010623 139 NR-TQISYPLEK-F-HS-DVAGRGFHNGRFVQRLREKAASLPNVR--LEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAY 211 (506)
Q Consensus 139 ~~-~~~~~~~~~-~-~~-~~~~~~i~~~~l~~~L~~~~~~~~~v~--i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~ 211 (506)
.. ....+|... . .. .......++.++.+.|.+.+.+. ++. ++++ +|+++...+++.. |+..+.++...+..
T Consensus 84 ~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~f-gl~~~I~~~t~V~~V~~~~~~w~-V~~~~~~~~~~~~~ 161 (461)
T PLN02172 84 ECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREF-KIEEMVRFETEVVRVEPVDGKWR-VQSKNSGGFSKDEI 161 (461)
T ss_pred hhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHc-CCcceEEecCEEEEEeecCCeEE-EEEEcCCCceEEEE
Confidence 00 000122111 0 00 00011235677889999999887 444 6666 5999987766432 44443333333457
Q ss_pred cCeEEeecCCcc
Q 010623 212 APLTIVCDGCFS 223 (506)
Q Consensus 212 a~~vV~AdG~~S 223 (506)
+|.||.|+|..+
T Consensus 162 ~d~VIvAtG~~~ 173 (461)
T PLN02172 162 FDAVVVCNGHYT 173 (461)
T ss_pred cCEEEEeccCCC
Confidence 999999999875
No 109
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.12 E-value=2.7e-09 Score=99.97 Aligned_cols=175 Identities=22% Similarity=0.186 Sum_probs=101.9
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHH----------HHHHhCchhHHhhccc
Q 010623 57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYL----------KLIELGLEDCVEQIDA 126 (506)
Q Consensus 57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~----------~l~~~g~~~~~~~~~~ 126 (506)
+.+..||+|||||+-|+++|+.|+++|.+++++|+-+.+..++.+...+.-... .++.+..|..+.....
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g 83 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESG 83 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhc
Confidence 455799999999999999999999999999999999876655544332211110 1111111211111100
Q ss_pred ce-ecce-EEEE-CC------------------------ceeeeecCC-cCCC------CCcccccccchHHHHHHHHHH
Q 010623 127 QR-VFGY-ALFK-DG------------------------NRTQISYPL-EKFH------SDVAGRGFHNGRFVQRLREKA 172 (506)
Q Consensus 127 ~~-~~~~-~~~~-~~------------------------~~~~~~~~~-~~~~------~~~~~~~i~~~~l~~~L~~~~ 172 (506)
.. ..+. .++. +. +.....||. ..++ ....+..++-.+-...+.+.+
T Consensus 84 ~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~ 163 (399)
T KOG2820|consen 84 VKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKA 163 (399)
T ss_pred eeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHH
Confidence 00 0000 0111 11 111222331 1111 123445667777888999999
Q ss_pred HcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCccc--chhhccCCCC
Q 010623 173 ASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN--LRRSLCNPKV 234 (506)
Q Consensus 173 ~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~--vR~~l~~~~~ 234 (506)
++. |+.++.++ |......+.....|.|.+.+|..+ .|+-+|.+.|+|-. ++..+++..+
T Consensus 164 ~~~-G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y--~akkiI~t~GaWi~klL~~~~~~~~P 225 (399)
T KOG2820|consen 164 REL-GVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIY--HAKKIIFTVGAWINKLLPTSLAIGFP 225 (399)
T ss_pred HHc-CeEEecCcceeeEeeccCCCceeEEEeccCCee--ecceEEEEecHHHHhhcCcccccCCc
Confidence 998 77788885 666554333333577778899854 59999999999853 4444555443
No 110
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.12 E-value=1.8e-09 Score=113.66 Aligned_cols=163 Identities=21% Similarity=0.282 Sum_probs=91.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc--cccccc-----chH-HHHHHh-----Cch--hHHh
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV--GELLQP-----GGY-LKLIEL-----GLE--DCVE 122 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~--g~~l~~-----~~~-~~l~~~-----g~~--~~~~ 122 (506)
+.++||+|||||.|||++|+.+++.|.+|+|+||.+.....+. +..++. .+. ..++.+ ++. +.+.
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~ 93 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVR 93 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 4579999999999999999999999999999999864322111 111110 001 111110 110 0000
Q ss_pred hc--------ccceecceEEEE--CCceeeeecCCcCCCCCcccccc------cchHHHHHHHHHHHcCCCEEEEece-E
Q 010623 123 QI--------DAQRVFGYALFK--DGNRTQISYPLEKFHSDVAGRGF------HNGRFVQRLREKAASLPNVRLEQGT-V 185 (506)
Q Consensus 123 ~~--------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i------~~~~l~~~L~~~~~~~~~v~i~~~~-v 185 (506)
.+ ......++.+.. +|........ .......+ .-..+...|.+.+++. +++++.++ +
T Consensus 94 ~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~-----g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~-gV~i~~~~~v 167 (541)
T PRK07804 94 SLVAEGPRAVRELVALGARFDESPDGRWALTREG-----GHSRRRIVHAGGDATGAEVQRALDAAVRAD-PLDIREHALA 167 (541)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCCcEeeeccC-----CeecCeeEecCCCCCHHHHHHHHHHHHHhC-CCEEEECeEe
Confidence 00 000011222211 1111000000 00000111 1235778899988887 58888775 9
Q ss_pred EEEEeeC-CeEEEEEEEe-----CCccEEEEEcCeEEeecCCcccchh
Q 010623 186 TSLLEEK-GTIKGVQYKT-----KAGEELTAYAPLTIVCDGCFSNLRR 227 (506)
Q Consensus 186 ~~~~~~~-~~v~~v~v~~-----~~G~~~~i~a~~vV~AdG~~S~vR~ 227 (506)
+++..++ +++.+|.+.+ .++ ...+.|+.||.|||++|.++.
T Consensus 168 ~~Li~~~~g~v~Gv~~~~~~~~~~~g-~~~i~Ak~VIlATGG~~~~~~ 214 (541)
T PRK07804 168 LDLLTDGTGAVAGVTLHVLGEGSPDG-VGAVHAPAVVLATGGLGQLYA 214 (541)
T ss_pred eeeEEcCCCeEEEEEEEeccCCCCCc-EEEEEcCeEEECCCCCCCCCC
Confidence 9998765 5888888762 333 356889999999999997653
No 111
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.11 E-value=9.4e-10 Score=115.21 Aligned_cols=66 Identities=24% Similarity=0.353 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcC-eEEeecCCcccchhhc
Q 010623 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAP-LTIVCDGCFSNLRRSL 229 (506)
Q Consensus 163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~-~vV~AdG~~S~vR~~l 229 (506)
.+...|.+.+.+.++++++.++ ++++..++++|++|.+.. +|++.+++|+ .||.|+|+++...+++
T Consensus 174 ~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~~-~g~~~~i~A~k~VIlAtGG~~~n~~m~ 241 (513)
T PRK12837 174 ALIGRFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVER-GGERRRVRARRGVLLAAGGFEQNDDMR 241 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEEE-CCcEEEEEeCceEEEeCCCccCCHHHH
Confidence 3566666666665688888885 999998888999998754 5767788996 7999999988664443
No 112
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.11 E-value=1.2e-09 Score=115.94 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEE-eCCccEEEEEcCeEEeecCCcccc
Q 010623 162 GRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYK-TKAGEELTAYAPLTIVCDGCFSNL 225 (506)
Q Consensus 162 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~-~~~G~~~~i~a~~vV~AdG~~S~v 225 (506)
..+...|.+.+.+. +++++..+ ++++..+++++.|+.+. ..+|+...++|+.||.|+|+++.+
T Consensus 135 ~~i~~~L~~~~~~~-gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 135 HAILHELVNNLRRY-GVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred HHHHHHHHHHHhhC-CCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence 35778888888776 78888875 99998888888888754 357776678999999999999875
No 113
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.11 E-value=1.5e-09 Score=111.53 Aligned_cols=77 Identities=22% Similarity=0.290 Sum_probs=55.6
Q ss_pred cccccchHHHHHHHHHHHcCCCEEEEece-EEEEEee-CCeEEEEEEE-eCCccEEEEEcCeEEeecCCcc-cchhhccC
Q 010623 156 GRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYK-TKAGEELTAYAPLTIVCDGCFS-NLRRSLCN 231 (506)
Q Consensus 156 ~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~~v~v~-~~~G~~~~i~a~~vV~AdG~~S-~vR~~l~~ 231 (506)
+..++...+.+.|.+.+.+.++++++.++ |+++..+ ++.+. +++. ..+|+..+++||+||.|.|++| .+.+.+++
T Consensus 178 ~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~-v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi 256 (497)
T PRK13339 178 GTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWE-VTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGI 256 (497)
T ss_pred ceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEE-EEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCC
Confidence 34678888999999998765578888875 9999876 55433 4433 3345333578999999999999 57777776
Q ss_pred CC
Q 010623 232 PK 233 (506)
Q Consensus 232 ~~ 233 (506)
+.
T Consensus 257 ~~ 258 (497)
T PRK13339 257 PE 258 (497)
T ss_pred Cc
Confidence 53
No 114
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.11 E-value=3.4e-09 Score=111.70 Aligned_cols=65 Identities=17% Similarity=0.217 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEc-CeEEeecCCcccchhhc
Q 010623 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYA-PLTIVCDGCFSNLRRSL 229 (506)
Q Consensus 163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a-~~vV~AdG~~S~vR~~l 229 (506)
.+...|.+.+++. +++++.++ ++++..++++|+||.+.. +|+++.+.+ +.||.|+|+++...+++
T Consensus 218 ~l~~~L~~~~~~~-Gv~i~~~t~v~~Li~~~g~V~GV~~~~-~g~~~~i~a~kaVILAtGGf~~n~em~ 284 (564)
T PRK12845 218 ALAAGLFAGVLRA-GIPIWTETSLVRLTDDGGRVTGAVVDH-RGREVTVTARRGVVLAAGGFDHDMEMR 284 (564)
T ss_pred HHHHHHHHHHHHC-CCEEEecCEeeEEEecCCEEEEEEEEE-CCcEEEEEcCCEEEEecCCccccHHHH
Confidence 3556777778776 78888875 999988778899998765 455566777 68999999999875443
No 115
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.11 E-value=1.5e-09 Score=114.63 Aligned_cols=62 Identities=18% Similarity=0.300 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCe-EEEEEEEe-CCccEEEEEcCeEEeecCCccc
Q 010623 162 GRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGT-IKGVQYKT-KAGEELTAYAPLTIVCDGCFSN 224 (506)
Q Consensus 162 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~-v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~ 224 (506)
..+...|.+.+.+. +++++.++ ++++..++++ +.||.+.+ .+|+...++|+.||.|+|+++.
T Consensus 134 ~~i~~~L~~~~~~~-gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 134 HEMMMGLMEYLIKE-RIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred HHHHHHHHHHHhcC-CCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 35777888888775 78888885 9999877665 88888766 6787778999999999999985
No 116
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.10 E-value=2.5e-09 Score=113.73 Aligned_cols=62 Identities=15% Similarity=0.215 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHcCCCEEEEece-EEEEEeeC-CeEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEK-GTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL 225 (506)
Q Consensus 163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~-~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v 225 (506)
.+...|.+.+.+. +++++.++ ++++..++ ++|.||.+.+ .+|+.+.+.|+.||.|+|+++..
T Consensus 150 ~i~~~L~~~~~~~-gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 214 (598)
T PRK09078 150 AILHTLYQQSLKH-NAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRA 214 (598)
T ss_pred HHHHHHHHHHhhc-CCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCccc
Confidence 5778888888776 78888775 99998765 6899998754 57877789999999999999863
No 117
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.10 E-value=2.3e-09 Score=114.32 Aligned_cols=166 Identities=17% Similarity=0.194 Sum_probs=94.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc--cccccc-------chHHH-HHH-----hCch-hH-H
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV--GELLQP-------GGYLK-LIE-----LGLE-DC-V 121 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~--g~~l~~-------~~~~~-l~~-----~g~~-~~-~ 121 (506)
.++||||||||.|||++|+.+++.|.+|+|+||.+....... ...+.. ...+. +.. -++. +. +
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv 107 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAI 107 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 468999999999999999999999999999999864332111 111111 11111 111 0110 00 0
Q ss_pred hh--------cccceecceEEEEC--CceeeeecCCcCC--C-CCcccccc---c--chHHHHHHHHHHHcCCCEEEEec
Q 010623 122 EQ--------IDAQRVFGYALFKD--GNRTQISYPLEKF--H-SDVAGRGF---H--NGRFVQRLREKAASLPNVRLEQG 183 (506)
Q Consensus 122 ~~--------~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~-~~~~~~~i---~--~~~l~~~L~~~~~~~~~v~i~~~ 183 (506)
.. +......++.+... +......+..... . .....+.+ + -..+...|.+.+.+. +++++.+
T Consensus 108 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~-gv~i~~~ 186 (617)
T PTZ00139 108 QYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKY-DCNFFIE 186 (617)
T ss_pred HHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhC-CCEEEec
Confidence 00 00001123333221 1110000000000 0 00000111 1 136788899888886 7888887
Q ss_pred e-EEEEEe-eCCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623 184 T-VTSLLE-EKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL 225 (506)
Q Consensus 184 ~-v~~~~~-~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v 225 (506)
+ ++++.. +++++.||.+.+ .+|+.+.++|+.||.|+|+++..
T Consensus 187 ~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 231 (617)
T PTZ00139 187 YFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRA 231 (617)
T ss_pred eEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCccc
Confidence 5 999887 678899988744 67887789999999999998753
No 118
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.08 E-value=3.1e-09 Score=111.83 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHcCCCEEEEece-EEEEEeeC------CeEEEEEEEe-CCccEEEEEcCeEEeecCCcccchh
Q 010623 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEK------GTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNLRR 227 (506)
Q Consensus 163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~------~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~vR~ 227 (506)
.+...|.+.+.+.++++++.++ ++++..++ +++.||.+.+ .+|+...+.|+.||.|+|+++.+..
T Consensus 139 ~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~ 211 (536)
T PRK09077 139 AVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKVYL 211 (536)
T ss_pred HHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCCCC
Confidence 5778888888877789988885 88888653 7899998865 4677778999999999999997654
No 119
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.08 E-value=2.8e-09 Score=113.23 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHcCC---CEEEEece-EEEEEee-CCeEEEEEEEeC-CccEEEEEcCeEEeecCCcccc
Q 010623 163 RFVQRLREKAASLP---NVRLEQGT-VTSLLEE-KGTIKGVQYKTK-AGEELTAYAPLTIVCDGCFSNL 225 (506)
Q Consensus 163 ~l~~~L~~~~~~~~---~v~i~~~~-v~~~~~~-~~~v~~v~v~~~-~G~~~~i~a~~vV~AdG~~S~v 225 (506)
.+...|.+.+.+.+ ++.+..++ ++++..+ +++|.||.+.+. +|+.+.+.|+.||.|+|+++.+
T Consensus 134 ~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 202 (589)
T PRK08641 134 QLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGII 202 (589)
T ss_pred HHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcCC
Confidence 47777877776542 37777664 8888874 678999988764 5666678999999999999864
No 120
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.07 E-value=5.6e-09 Score=110.29 Aligned_cols=65 Identities=25% Similarity=0.311 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEc-CeEEeecCCcccchhhc
Q 010623 163 RFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYA-PLTIVCDGCFSNLRRSL 229 (506)
Q Consensus 163 ~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a-~~vV~AdG~~S~vR~~l 229 (506)
.+...|.+.+++. +++++.+ +++++..++++|++|.+.. +|+.+++.| +.||.|+|+++.-.+++
T Consensus 209 ~l~~~l~~~~~~~-gv~i~~~~~v~~Li~~~g~v~Gv~~~~-~g~~~~i~A~~aVIlAtGG~~~N~em~ 275 (557)
T PRK12844 209 ALIGRMLEAALAA-GVPLWTNTPLTELIVEDGRVVGVVVVR-DGREVLIRARRGVLLASGGFGHNAEMR 275 (557)
T ss_pred HHHHHHHHHHHhC-CCEEEeCCEEEEEEEeCCEEEEEEEEE-CCeEEEEEecceEEEecCCccCCHHHH
Confidence 4666777888877 7888887 4999998889999998864 566677889 47999999999865544
No 121
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.07 E-value=2.2e-08 Score=101.61 Aligned_cols=63 Identities=25% Similarity=0.271 Sum_probs=47.1
Q ss_pred ccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccc
Q 010623 157 RGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNL 225 (506)
Q Consensus 157 ~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~v 225 (506)
..++...+...|.+.+.+.|...+...+ +..+..+. + .+.+.+.+|+ ++|+.||.|+|.++..
T Consensus 151 ~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~-~--~~~v~t~~g~---i~a~~vv~a~G~~~~~ 214 (387)
T COG0665 151 GHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDG-R--VVGVETDGGT---IEADKVVLAAGAWAGE 214 (387)
T ss_pred CcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecC-c--EEEEEeCCcc---EEeCEEEEcCchHHHH
Confidence 4566778899999999998656666554 77777652 2 3455577775 6799999999999864
No 122
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.07 E-value=2.5e-09 Score=113.97 Aligned_cols=63 Identities=19% Similarity=0.209 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHcCCCEEEEece-EEEEEee-CCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623 162 GRFVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL 225 (506)
Q Consensus 162 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v 225 (506)
..+...|.+.+.+. +++++.++ ++++..+ ++++.||.+.+ .+|+...+.|+.||.|+|+++..
T Consensus 187 ~~i~~~L~~~a~~~-gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 187 HAMLHTLYGQAMKH-NTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRA 252 (635)
T ss_pred HHHHHHHHHHHHhC-CCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence 35778888888876 78888775 9998876 67899988755 57887789999999999999864
No 123
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.06 E-value=2.6e-09 Score=113.37 Aligned_cols=62 Identities=15% Similarity=0.210 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHcCCCEEEEece-EEEEEee-CCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL 225 (506)
Q Consensus 163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v 225 (506)
.+...|.+.+.+. ++.++.++ ++++..+ ++++.||.+.+ .+|+...+.|+.||.|+|+++.+
T Consensus 144 ~i~~~L~~~~~~~-gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 144 ALLHTLYQQNLKN-HTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRI 208 (588)
T ss_pred HHHHHHHHHhhhc-CCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence 5778888887765 78887775 9999875 67899998754 57877789999999999999864
No 124
>PRK08275 putative oxidoreductase; Provisional
Probab=99.06 E-value=3.5e-09 Score=111.96 Aligned_cols=62 Identities=24% Similarity=0.316 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHcCCCEEEEece-EEEEEee-CCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL 225 (506)
Q Consensus 163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v 225 (506)
.+.+.|.+.+.+. ++++.+.+ ++++..+ ++++.||.+.+ .+|+...++|+.||.|+|+.+.+
T Consensus 138 ~i~~~L~~~~~~~-gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 138 DIKKVLYRQLKRA-RVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRL 202 (554)
T ss_pred HHHHHHHHHHHHC-CCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcccc
Confidence 5778888888776 78888875 9999876 67788887654 57776678999999999998864
No 125
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.05 E-value=4.6e-09 Score=112.28 Aligned_cols=167 Identities=21% Similarity=0.243 Sum_probs=91.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc---ccc---cccc----chHH-HH----HH-hCchh--H
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI---VGE---LLQP----GGYL-KL----IE-LGLED--C 120 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~---~g~---~l~~----~~~~-~l----~~-~g~~~--~ 120 (506)
.++||+|||||.|||+||+.+++.|.+|+|+||.+.....+ .|. .+.. ...+ .+ +. -++.+ .
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~l~d~~~ 86 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKFLNNWRM 86 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhccCCcHHH
Confidence 46899999999999999999999999999999986432111 111 0110 0111 11 00 01111 0
Q ss_pred Hhhc--------ccceecceEEEE--CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcC--------C----CE
Q 010623 121 VEQI--------DAQRVFGYALFK--DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASL--------P----NV 178 (506)
Q Consensus 121 ~~~~--------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~--------~----~v 178 (506)
+..+ ......++.+.. ++......+....+........-.-..+...|.+.+.+. + ++
T Consensus 87 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~~G~~~~~v 166 (626)
T PRK07803 87 AELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAELGDYEARI 166 (626)
T ss_pred HHHHHHHhHHHHHHHHHCCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhccccccccCCcCce
Confidence 0000 000112222221 111100011000000000000001135677788777665 2 38
Q ss_pred EEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623 179 RLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL 225 (506)
Q Consensus 179 ~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v 225 (506)
.++.++ ++++..+++++.|+.+.+ .+|+...+.|+.||.|+|+.+..
T Consensus 167 ~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~ 215 (626)
T PRK07803 167 KVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIGKS 215 (626)
T ss_pred EEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCcccCC
Confidence 888885 999988888888887654 57776778999999999997754
No 126
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.05 E-value=5.5e-09 Score=110.79 Aligned_cols=64 Identities=25% Similarity=0.287 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcCCCEEEEece-EEEEEee-CCeEEEEEEEeCCccEEEEEcC-eEEeecCCcccchhhc
Q 010623 164 FVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYKTKAGEELTAYAP-LTIVCDGCFSNLRRSL 229 (506)
Q Consensus 164 l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~~v~v~~~~G~~~~i~a~-~vV~AdG~~S~vR~~l 229 (506)
+...|.+.+++. +++++.++ ++++..+ +++|+||.+.. +|+.++++|+ .||.|+|+++.-.+++
T Consensus 215 ~~~~l~~~~~~~-gv~i~~~~~~~~Li~d~~g~V~Gv~~~~-~~~~~~i~a~~aVilAtGGf~~N~em~ 281 (584)
T PRK12835 215 LVARLRLALKDA-GVPLWLDSPMTELITDPDGAVVGAVVER-EGRTLRIGARRGVILATGGFDHDMDWR 281 (584)
T ss_pred HHHHHHHHHHhC-CceEEeCCEEEEEEECCCCcEEEEEEEe-CCcEEEEEeceeEEEecCcccCCHHHH
Confidence 444566666665 88888885 9999986 57899998854 6666778997 6999999999755444
No 127
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.04 E-value=3.9e-09 Score=110.35 Aligned_cols=61 Identities=23% Similarity=0.340 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccc
Q 010623 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNL 225 (506)
Q Consensus 163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~v 225 (506)
.+.+.|.+.+. . +++++.++ ++++..+++++.+|.+.+.+|+...++|+.||.|+|+++.+
T Consensus 131 ~i~~~L~~~~~-~-gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~~ 192 (510)
T PRK08071 131 NLLEHLLQELV-P-HVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCGGL 192 (510)
T ss_pred HHHHHHHHHHh-c-CCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCccc
Confidence 47778887775 3 78888875 99998778888888887777777778999999999999863
No 128
>PLN02815 L-aspartate oxidase
Probab=99.04 E-value=4.6e-09 Score=111.03 Aligned_cols=165 Identities=17% Similarity=0.241 Sum_probs=92.3
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc--cccccc-----chH-HHHHHh---C--ch-hHH-
Q 010623 57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV--GELLQP-----GGY-LKLIEL---G--LE-DCV- 121 (506)
Q Consensus 57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~--g~~l~~-----~~~-~~l~~~---g--~~-~~~- 121 (506)
.+.++||||||+|.|||++|+.+++.| +|+|+||.+.....+. +..++. ... ..++.+ | +. +.+
T Consensus 26 ~~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv 104 (594)
T PLN02815 26 STKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETV 104 (594)
T ss_pred cccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHH
Confidence 345689999999999999999999999 9999999864332111 111110 011 111111 1 10 110
Q ss_pred hhc--------ccceecceEEEECCceeeeecCCcCCCCCcccccc-----cchHHHHHHHHHHHcCCCEEEEece-EEE
Q 010623 122 EQI--------DAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGF-----HNGRFVQRLREKAASLPNVRLEQGT-VTS 187 (506)
Q Consensus 122 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~l~~~L~~~~~~~~~v~i~~~~-v~~ 187 (506)
..+ ......++.+...... ..... ..........+ .-..+...|.+.+.+.++++++.++ +++
T Consensus 105 ~~~~~~s~e~i~~L~~~Gv~F~~~~~g-~~~~~--~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~ 181 (594)
T PLN02815 105 RVVCTEGPERVKELIAMGASFDHGEDG-NLHLA--REGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAID 181 (594)
T ss_pred HHHHHHHHHHHHHHHHhCCeeeecCCC-Ccccc--CCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhhe
Confidence 000 0001122222211100 00000 00000000111 1235778888888776688888875 899
Q ss_pred EEeeC-C---eEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623 188 LLEEK-G---TIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL 225 (506)
Q Consensus 188 ~~~~~-~---~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v 225 (506)
+..++ + ++.|+.+.+ .+|+...+.|+.||.|+|+++.+
T Consensus 182 Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 224 (594)
T PLN02815 182 LLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGHI 224 (594)
T ss_pred eeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcceee
Confidence 88753 3 278888754 57877788999999999999864
No 129
>PRK12839 hypothetical protein; Provisional
Probab=99.04 E-value=6.6e-09 Score=109.83 Aligned_cols=64 Identities=27% Similarity=0.349 Sum_probs=49.2
Q ss_pred chHHHHHHHHHHHcCCCEEEEece-EEEEEee-CCeEEEEEEEeCCccEEEEEcCeEEeecCCcccc
Q 010623 161 NGRFVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNL 225 (506)
Q Consensus 161 ~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~v 225 (506)
...+...|.+.+.+. +++++.++ ++++..+ +++|++|.+...+|+...+.++.||.|+|+++.-
T Consensus 213 g~~l~~~L~~~a~~~-Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n 278 (572)
T PRK12839 213 GTALTGRLLRSADDL-GVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPND 278 (572)
T ss_pred HHHHHHHHHHHHHHC-CCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccC
Confidence 345677788888887 78888775 9999764 6789999987777764434458999999999973
No 130
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.04 E-value=2.2e-09 Score=122.26 Aligned_cols=166 Identities=24% Similarity=0.276 Sum_probs=93.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc--cccccccchHHHHHHhCchhHHhhc-----------
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI--VGELLQPGGYLKLIELGLEDCVEQI----------- 124 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~--~g~~l~~~~~~~l~~~g~~~~~~~~----------- 124 (506)
+.++||||||||.||++||+.+++.|.+|+|+||.+...... .+..++..+.+..++.|+.+....+
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~~~~~~~~ 486 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDTHLSGKGG 486 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchhhcccccccCCchhhhhhcccccHHHHHHHHHHhccCC
Confidence 457999999999999999999999999999999986543322 1122222222222222322111000
Q ss_pred ----------cc--------ceecceEEEE----CCceeeeecCCcCCCCCccccccc-chHHHHHHHHHHHcC--CCEE
Q 010623 125 ----------DA--------QRVFGYALFK----DGNRTQISYPLEKFHSDVAGRGFH-NGRFVQRLREKAASL--PNVR 179 (506)
Q Consensus 125 ----------~~--------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~-~~~l~~~L~~~~~~~--~~v~ 179 (506)
.. ....++.+.. .+....... .......+.... -..+...|.+.+++. .+++
T Consensus 487 ~~d~~lv~~~~~~s~e~idwL~~~Gv~f~~~~~~gg~~~~r~~---~~~~~~~g~~~~~G~~i~~~l~~~~~~~~~~gv~ 563 (1167)
T PTZ00306 487 HCDPGLVKTLSVKSADAISWLSSLGVPLTVLSQLGGASRKRCH---RAPDKKDGTPVPIGFTIMRTLEDHIRTKLSGRVT 563 (1167)
T ss_pred CCCHHHHHHHHHhhHHHHHHHHHcCCCceeeeccCCCCCCcee---ecCcccCCCcCCcHHHHHHHHHHHHHhhccCCcE
Confidence 00 0001111100 000000000 000000000001 123555666666542 4788
Q ss_pred EEece-EEEEEeeC---------CeEEEEEEEeC---CccEEEEEcCeEEeecCCcccch
Q 010623 180 LEQGT-VTSLLEEK---------GTIKGVQYKTK---AGEELTAYAPLTIVCDGCFSNLR 226 (506)
Q Consensus 180 i~~~~-v~~~~~~~---------~~v~~v~v~~~---~G~~~~i~a~~vV~AdG~~S~vR 226 (506)
+++++ ++++..++ ++|+||.+.+. +|+.+.++|+.||.|+|+++...
T Consensus 564 i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~N~ 623 (1167)
T PTZ00306 564 IMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSNDH 623 (1167)
T ss_pred EEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcccCc
Confidence 88885 99999763 27999998876 88878899999999999999754
No 131
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.03 E-value=6.4e-09 Score=110.52 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHcCCCEEEEece-EEEEEee-CCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL 225 (506)
Q Consensus 163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v 225 (506)
.+...|.+.+.+. +++++.++ ++++..+ ++++.||.+.+ .+|+...+.|+.||.|+|+.+.+
T Consensus 149 ~l~~~L~~~~~~~-gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 149 ALLHTLYQQNVAA-KTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI 213 (591)
T ss_pred HHHHHHHHHHHhc-CCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence 5778888888776 77887775 8998865 57888998754 56776778999999999999865
No 132
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.03 E-value=8e-09 Score=109.78 Aligned_cols=64 Identities=27% Similarity=0.334 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcC-eEEeecCCcccchhh
Q 010623 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAP-LTIVCDGCFSNLRRS 228 (506)
Q Consensus 163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~-~vV~AdG~~S~vR~~ 228 (506)
.+...|.+.+.+. +++++.++ |+++..+++++++|.+.+.+++ .++.++ .||.|+|.++.-.++
T Consensus 215 ~l~~~L~~~~~~~-Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~-~~i~a~k~VVlAtGg~~~n~~~ 280 (574)
T PRK12842 215 ALAARLAKSALDL-GIPILTGTPARELLTEGGRVVGARVIDAGGE-RRITARRGVVLACGGFSHDLAR 280 (574)
T ss_pred HHHHHHHHHHHhC-CCEEEeCCEEEEEEeeCCEEEEEEEEcCCce-EEEEeCCEEEEcCCCccchHHH
Confidence 3566677778776 78888775 9999988888999988765554 457785 899999999954433
No 133
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.02 E-value=3.3e-09 Score=109.47 Aligned_cols=69 Identities=12% Similarity=0.188 Sum_probs=51.7
Q ss_pred cccchHHHHHHHHHHHc----CCC-EEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcc-cchhhcc
Q 010623 158 GFHNGRFVQRLREKAAS----LPN-VRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS-NLRRSLC 230 (506)
Q Consensus 158 ~i~~~~l~~~L~~~~~~----~~~-v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S-~vR~~l~ 230 (506)
.++...+...|.+.+++ .|+ +.++.++ |+++..+++++ +.+.+.+| +++||.||.|.|++| .+.+.++
T Consensus 207 ~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~--~~V~T~~G---~i~A~~VVvaAG~~S~~La~~~G 281 (497)
T PTZ00383 207 TVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSL--YKIHTNRG---EIRARFVVVSACGYSLLFAQKMG 281 (497)
T ss_pred EECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCe--EEEEECCC---EEEeCEEEECcChhHHHHHHHhC
Confidence 56777899999999988 643 7777774 99998875543 34456666 377999999999999 4666666
Q ss_pred C
Q 010623 231 N 231 (506)
Q Consensus 231 ~ 231 (506)
+
T Consensus 282 i 282 (497)
T PTZ00383 282 Y 282 (497)
T ss_pred C
Confidence 5
No 134
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.02 E-value=1.7e-09 Score=114.94 Aligned_cols=63 Identities=27% Similarity=0.362 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEc-CeEEeecCCcccchh
Q 010623 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYA-PLTIVCDGCFSNLRR 227 (506)
Q Consensus 163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a-~~vV~AdG~~S~vR~ 227 (506)
.+...|.+.+++. +++++.++ |+++..+++++++|.+...++ ..+++| +.||.|+|+++.-.+
T Consensus 218 ~l~~~L~~~a~~~-Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~-~~~i~a~k~VVlAtGg~~~n~~ 282 (581)
T PRK06134 218 ALVARLLKSAEDL-GVRIWESAPARELLREDGRVAGAVVETPGG-LQEIRARKGVVLAAGGFPHDPA 282 (581)
T ss_pred HHHHHHHHHHHhC-CCEEEcCCEEEEEEEeCCEEEEEEEEECCc-EEEEEeCCEEEEcCCCcccCHH
Confidence 4667888888887 78888774 999988788898888866544 456889 999999999996433
No 135
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=99.01 E-value=2.6e-08 Score=93.37 Aligned_cols=75 Identities=24% Similarity=0.292 Sum_probs=59.1
Q ss_pred cccchHHHHHHHHHHHcCCCEEEEeceEEEEEee----------CC-------eEEEEEEEeCCccEEEEEcCeEEeecC
Q 010623 158 GFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEE----------KG-------TIKGVQYKTKAGEELTAYAPLTIVCDG 220 (506)
Q Consensus 158 ~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~----------~~-------~v~~v~v~~~~G~~~~i~a~~vV~AdG 220 (506)
.++...|...+++.+... |+.+..++|++++.+ ++ ++.+|.++-.|+...+++++++|.|.|
T Consensus 239 wfdpw~LLs~~rrk~~~l-Gv~f~~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAG 317 (509)
T KOG2853|consen 239 WFDPWALLSGIRRKAITL-GVQFVKGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAG 317 (509)
T ss_pred ccCHHHHHHHHHHHhhhh-cceEecceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccC
Confidence 456778889999999988 788888888887744 23 455677777777777899999999999
Q ss_pred Ccc-cchhhccCCC
Q 010623 221 CFS-NLRRSLCNPK 233 (506)
Q Consensus 221 ~~S-~vR~~l~~~~ 233 (506)
++| .+.+..++..
T Consensus 318 a~s~QvArlAgIG~ 331 (509)
T KOG2853|consen 318 AWSGQVARLAGIGK 331 (509)
T ss_pred ccHHHHHHHhccCC
Confidence 999 6777777753
No 136
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.01 E-value=1.7e-09 Score=115.79 Aligned_cols=62 Identities=16% Similarity=0.272 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL 225 (506)
Q Consensus 163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v 225 (506)
.+...|.+.+.+. ++.++.++ ++++..+++++.|+.+.+ .+|+...+.|+.||.|+|+++.+
T Consensus 159 ~l~~~L~~~~~~~-gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~ 222 (657)
T PRK08626 159 TMLYAVDNEAIKL-GVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGRI 222 (657)
T ss_pred HHHHHHHHHHHhC-CCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCC
Confidence 4566788878776 78888775 999998888999998876 68887788999999999999865
No 137
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.00 E-value=1.6e-08 Score=107.39 Aligned_cols=65 Identities=22% Similarity=0.234 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEc-CeEEeecCCcccchhhc
Q 010623 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYA-PLTIVCDGCFSNLRRSL 229 (506)
Q Consensus 163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a-~~vV~AdG~~S~vR~~l 229 (506)
.+...|.+.+++. +++++.++ ++++..++++|.+|.+.. +|+..++.| +.||.|+|+++...+++
T Consensus 222 ~l~~aL~~~~~~~-Gv~i~~~t~v~~Li~~~g~V~GV~~~~-~g~~~~i~A~~~VVlAtGg~~~n~em~ 288 (578)
T PRK12843 222 ALIGRLLYSLRAR-GVRILTQTDVESLETDHGRVIGATVVQ-GGVRRRIRARGGVVLATGGFNRHPQLR 288 (578)
T ss_pred HHHHHHHHHHHhC-CCEEEeCCEEEEEEeeCCEEEEEEEec-CCeEEEEEccceEEECCCCcccCHHHH
Confidence 4677788888877 68888774 999987788899988754 566667886 78999999999865554
No 138
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.00 E-value=2.7e-09 Score=110.52 Aligned_cols=60 Identities=23% Similarity=0.305 Sum_probs=45.3
Q ss_pred ccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCccc
Q 010623 157 RGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN 224 (506)
Q Consensus 157 ~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~ 224 (506)
..++...+...|.+.+.+. |++++.++ |++++. ++. +.+.+++|+ ++||.||.|+|++|.
T Consensus 178 g~i~P~~l~~~L~~~a~~~-Gv~i~~~t~V~~i~~-~~~---~~v~t~~g~---v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 178 ASVQPGLLVRGLRRVALEL-GVEIHENTPMTGLEE-GQP---AVVRTPDGQ---VTADKVVLALNAWMA 238 (460)
T ss_pred eEECHHHHHHHHHHHHHHc-CCEEECCCeEEEEee-CCc---eEEEeCCcE---EECCEEEEccccccc
Confidence 4567778999999999888 67787775 988875 332 345566663 679999999999974
No 139
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.00 E-value=1.4e-09 Score=99.79 Aligned_cols=136 Identities=23% Similarity=0.269 Sum_probs=72.0
Q ss_pred EEECCCHHHHHHHHHHHHCCCc-EEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCceee
Q 010623 64 IVVGAGVAGAALANTLAKDGRR-VHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQ 142 (506)
Q Consensus 64 vIVGgG~aGl~~A~~La~~G~~-v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (506)
+||||||+||++|..|.++|++ ++|+||++.+...-. .......+..-.... .. .+.. +-
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~----~~~~~~~~~~~~~~~--~~------~~~~---~~---- 61 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWR----RYYSYTRLHSPSFFS--SD------FGLP---DF---- 61 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHH----CH-TTTT-BSSSCCT--GG------SS-----CC----
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeE----EeCCCCccccCcccc--cc------ccCC---cc----
Confidence 6999999999999999999999 999999865322111 000000000000000 00 0000 00
Q ss_pred eecCCcCCCC-CcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecC
Q 010623 143 ISYPLEKFHS-DVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDG 220 (506)
Q Consensus 143 ~~~~~~~~~~-~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG 220 (506)
..+....... ..........++.+.|.+.+++. +..+++++ |+++..++++ ++++..+++ +++||.||.|+|
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~i~~~~~V~~v~~~~~~---w~v~~~~~~--~~~a~~VVlAtG 135 (203)
T PF13738_consen 62 ESFSFDDSPEWRWPHDFPSGEEVLDYLQEYAERF-GLEIRFNTRVESVRRDGDG---WTVTTRDGR--TIRADRVVLATG 135 (203)
T ss_dssp CHSCHHHHHHHHHSBSSEBHHHHHHHHHHHHHHT-TGGEETS--EEEEEEETTT---EEEEETTS---EEEEEEEEE---
T ss_pred cccccccCCCCCCCcccCCHHHHHHHHHHHHhhc-CcccccCCEEEEEEEeccE---EEEEEEecc--eeeeeeEEEeee
Confidence 0000000000 00112356677888888888887 56677764 9999999885 556677774 467999999999
Q ss_pred Cccc
Q 010623 221 CFSN 224 (506)
Q Consensus 221 ~~S~ 224 (506)
..|.
T Consensus 136 ~~~~ 139 (203)
T PF13738_consen 136 HYSH 139 (203)
T ss_dssp SSCS
T ss_pred ccCC
Confidence 8764
No 140
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.98 E-value=6.9e-09 Score=109.23 Aligned_cols=61 Identities=23% Similarity=0.250 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHcCCCEEEEece-EEEEEeeC--CeEEEEEEEeCCccEEEEEcCeEEeecCCccc
Q 010623 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEK--GTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN 224 (506)
Q Consensus 163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~--~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~ 224 (506)
.+...|.+.+.+.++++++.++ ++++..++ +++.||.+.. +|....+.|+.||.|+|+++.
T Consensus 135 ~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~-~g~~~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 135 AIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLY-QGQITWLRAGAVILATGGGGQ 198 (553)
T ss_pred HHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEE-CCeEEEEEcCEEEEcCCCCcc
Confidence 5778888888766689998885 99998763 7888887754 676667899999999999865
No 141
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.98 E-value=8.6e-09 Score=106.74 Aligned_cols=60 Identities=27% Similarity=0.354 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccchh
Q 010623 162 GRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRR 227 (506)
Q Consensus 162 ~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~ 227 (506)
..+.+.|.+.+++. ++++..++++++..+++++.++.+ +|+ .++++.||.|+|++|....
T Consensus 120 ~~i~~~L~~~~~~~-gv~i~~~~v~~l~~~~g~v~Gv~~---~g~--~i~a~~VVLATGG~~~~~~ 179 (466)
T PRK08401 120 KHIIKILYKHAREL-GVNFIRGFAEELAIKNGKAYGVFL---DGE--LLKFDATVIATGGFSGLFK 179 (466)
T ss_pred HHHHHHHHHHHHhc-CCEEEEeEeEEEEeeCCEEEEEEE---CCE--EEEeCeEEECCCcCcCCCC
Confidence 35788898888876 677777778888877777777764 343 4779999999999998654
No 142
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.97 E-value=1e-08 Score=109.01 Aligned_cols=63 Identities=19% Similarity=0.139 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHcCCCEEEEece-EEEEEeeC----CeEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623 162 GRFVQRLREKAASLPNVRLEQGT-VTSLLEEK----GTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL 225 (506)
Q Consensus 162 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~----~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v 225 (506)
..+...|.+.+.+. ++++..++ ++++..++ +++.||.+.+ .+|+...++|+.||.|+|+.+.+
T Consensus 140 ~~i~~~L~~~~~~~-gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 140 HMILQTLYQNCVKH-GVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRV 208 (583)
T ss_pred HHHHHHHHHHHHhc-CCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence 35778888888876 78888775 99988665 7888888743 56776678999999999999865
No 143
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.96 E-value=1.3e-08 Score=108.19 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHc---CCCEEEEece-EEEEEee-CCeEEEEEEEeC-CccEEEEEcCeEEeecCCcccc
Q 010623 163 RFVQRLREKAAS---LPNVRLEQGT-VTSLLEE-KGTIKGVQYKTK-AGEELTAYAPLTIVCDGCFSNL 225 (506)
Q Consensus 163 ~l~~~L~~~~~~---~~~v~i~~~~-v~~~~~~-~~~v~~v~v~~~-~G~~~~i~a~~vV~AdG~~S~v 225 (506)
.+...|.+.+.+ .++++++.++ ++++..+ ++++.||.+.+. +|+...+.|+.||.|+|+++.+
T Consensus 130 ~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 198 (603)
T TIGR01811 130 QLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYGNV 198 (603)
T ss_pred HHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcCc
Confidence 344555544432 3578888885 9999875 458999988763 6776778999999999998764
No 144
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.95 E-value=1.1e-08 Score=107.19 Aligned_cols=62 Identities=21% Similarity=0.369 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccc
Q 010623 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNL 225 (506)
Q Consensus 163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~v 225 (506)
.+...|.+.+.+.++++++.++ ++++..+++++.+|.+.+. ++..+++|+.||.|+|+.+..
T Consensus 137 ~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~-~~~~~i~Ak~VVLATGG~~~~ 199 (513)
T PRK07512 137 AIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATA-GGPVVLPARAVVLATGGIGGL 199 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeC-CeEEEEECCEEEEcCCCCcCC
Confidence 5788888888776688998885 9998877788888887654 334568899999999998753
No 145
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.94 E-value=1.3e-08 Score=99.43 Aligned_cols=113 Identities=25% Similarity=0.337 Sum_probs=75.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
+||+|||||++|+++|..|++.|++|+|+|+.+. .| .+... ..+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~-----gg-~~~~~-----------~~~------------------- 44 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP-----GG-QLTTT-----------TEV------------------- 44 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC-----Cc-ceeec-----------ccc-------------------
Confidence 6999999999999999999999999999998751 11 01000 000
Q ss_pred eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecC
Q 010623 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDG 220 (506)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG 220 (506)
..++ .+. ..+....+...+.+.+.+. +++++.++|+++..+++. +.+...+|. ++++|+||.|+|
T Consensus 45 --~~~~--~~~-----~~~~~~~~~~~l~~~~~~~-gv~~~~~~v~~v~~~~~~---~~v~~~~~~--~~~~d~liiAtG 109 (300)
T TIGR01292 45 --ENYP--GFP-----EGISGPELMEKMKEQAVKF-GAEIIYEEVIKVDLSDRP---FKVKTGDGK--EYTAKAVIIATG 109 (300)
T ss_pred --cccC--CCC-----CCCChHHHHHHHHHHHHHc-CCeEEEEEEEEEEecCCe---eEEEeCCCC--EEEeCEEEECCC
Confidence 0000 000 0122335667778888777 677777779888876653 344455665 467999999999
Q ss_pred Cccc
Q 010623 221 CFSN 224 (506)
Q Consensus 221 ~~S~ 224 (506)
....
T Consensus 110 ~~~~ 113 (300)
T TIGR01292 110 ASAR 113 (300)
T ss_pred CCcc
Confidence 8653
No 146
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.93 E-value=7.4e-09 Score=109.54 Aligned_cols=61 Identities=23% Similarity=0.156 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHcCCCEEEEec-eEEEEEeeC---CeEEEEEEEe-CCccEEEEEcCeEEeecCCccc
Q 010623 163 RFVQRLREKAASLPNVRLEQG-TVTSLLEEK---GTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSN 224 (506)
Q Consensus 163 ~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~---~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~ 224 (506)
.+...+...+.+. +++++.. .++++..++ +++.||.+.+ .+|+...+.|+.||.|+|+++.
T Consensus 127 ~~~r~l~~~l~~~-~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 192 (614)
T TIGR02061 127 SYKPIVAEAAKNA-LGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVN 192 (614)
T ss_pred hHHHHHHHHHHhC-CCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcccc
Confidence 3445555555554 4677776 499998764 6899998754 5777778999999999999974
No 147
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.93 E-value=7.8e-09 Score=104.00 Aligned_cols=33 Identities=48% Similarity=0.655 Sum_probs=31.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
+||+|||||++|+++|+.|+++|.+|+|+|+..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 599999999999999999999999999999975
No 148
>PLN02612 phytoene desaturase
Probab=98.92 E-value=4.2e-07 Score=96.27 Aligned_cols=63 Identities=27% Similarity=0.328 Sum_probs=47.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc------c------c----ccccchHHHHHHhCchhHH
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV------G------E----LLQPGGYLKLIELGLEDCV 121 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~------g------~----~l~~~~~~~l~~~g~~~~~ 121 (506)
...+|+|||||++||++|+.|+++|++|+|+|+++....... | . ...++..++++++|+.+.+
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~~ 170 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRL 170 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCcccc
Confidence 458999999999999999999999999999999864332111 1 0 1235667889999986543
No 149
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.91 E-value=1.4e-07 Score=86.70 Aligned_cols=166 Identities=18% Similarity=0.265 Sum_probs=96.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC------CcEEEEecCCCCCCcc--cccc----cccchHHHHHH--hCchhHHh-h
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDG------RRVHVIERDLSEPDRI--VGEL----LQPGGYLKLIE--LGLEDCVE-Q 123 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G------~~v~vvE~~~~~~~~~--~g~~----l~~~~~~~l~~--~g~~~~~~-~ 123 (506)
...+|+|||||+.|.++|++|++++ +.++|+|+..-....+ .+.. ..+.-+.-|.. +.+.+.+. +
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsde 88 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDE 88 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHh
Confidence 3479999999999999999999998 8999999875322111 1111 11111111111 11222221 1
Q ss_pred cccceecceEE---E------ECCceee----eecC----Cc---CCCCCcccccccchHHHHHHHHHHHcCCCEEEEec
Q 010623 124 IDAQRVFGYAL---F------KDGNRTQ----ISYP----LE---KFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG 183 (506)
Q Consensus 124 ~~~~~~~~~~~---~------~~~~~~~----~~~~----~~---~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~ 183 (506)
++.....+++. | .+-+... +++- .. ..+.......++...|.+.++..+.+.++|++..+
T Consensus 89 ydGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~G 168 (380)
T KOG2852|consen 89 YDGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVFG 168 (380)
T ss_pred hcCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEEEEe
Confidence 12122222221 1 1111000 0000 00 01112223467888999999999999999999999
Q ss_pred eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCccc
Q 010623 184 TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN 224 (506)
Q Consensus 184 ~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~ 224 (506)
+|.++..+..++.++....+.+.......+.+|.+.|.|+.
T Consensus 169 kv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 169 KVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred eeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCch
Confidence 99999766666665544333343445678999999999984
No 150
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.3e-08 Score=96.57 Aligned_cols=114 Identities=27% Similarity=0.360 Sum_probs=76.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRR-VHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD 137 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~-v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 137 (506)
..+||+||||||+||+||+.+++.|++ ++|+|+... . | .+. ....+.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~-g----g-~~~-----------~~~~ve--------------- 49 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEP-G----G-QLT-----------KTTDVE--------------- 49 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCc-C----C-ccc-----------cceeec---------------
Confidence 358999999999999999999999999 777776531 1 0 000 000000
Q ss_pred CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623 138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV 217 (506)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~ 217 (506)
.|| ..+ ..+.-..|.+.+.+.+... ++++...+|.++...++ ..++.+.+|+ ++|+.||.
T Consensus 50 ------nyp-----g~~--~~~~g~~L~~~~~~~a~~~-~~~~~~~~v~~v~~~~~---~F~v~t~~~~---~~ak~vIi 109 (305)
T COG0492 50 ------NYP-----GFP--GGILGPELMEQMKEQAEKF-GVEIVEDEVEKVELEGG---PFKVKTDKGT---YEAKAVII 109 (305)
T ss_pred ------CCC-----CCc--cCCchHHHHHHHHHHHhhc-CeEEEEEEEEEEeecCc---eEEEEECCCe---EEEeEEEE
Confidence 011 000 0123446788888888866 78887777888877765 3566677776 56999999
Q ss_pred ecCCccc
Q 010623 218 CDGCFSN 224 (506)
Q Consensus 218 AdG~~S~ 224 (506)
|+|....
T Consensus 110 AtG~~~~ 116 (305)
T COG0492 110 ATGAGAR 116 (305)
T ss_pred CcCCccc
Confidence 9998764
No 151
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.90 E-value=9.3e-09 Score=102.28 Aligned_cols=114 Identities=19% Similarity=0.193 Sum_probs=75.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc--------cccccccchHHHHHHhCchh-HHhhcccceecc
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI--------VGELLQPGGYLKLIELGLED-CVEQIDAQRVFG 131 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~--------~g~~l~~~~~~~l~~~g~~~-~~~~~~~~~~~~ 131 (506)
.||+|||||++|+.+|+.|+++|++|+|+|+.+...... ..-....++...+...|++. .+...+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~em~~lgs----- 77 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKEEMRRLGS----- 77 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHHHHHHhcc-----
Confidence 599999999999999999999999999999876542210 11123344556677788775 3333221
Q ss_pred eEEEECCceeeeecCCcCCCCCccc-ccccchHHHHHHHHHHHcCCCEEEEeceEEEEE
Q 010623 132 YALFKDGNRTQISYPLEKFHSDVAG-RGFHNGRFVQRLREKAASLPNVRLEQGTVTSLL 189 (506)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~ 189 (506)
.. ...... ......+ ..++|..+.+.|.+.+.+.++++++.++|+++.
T Consensus 78 l~-~~aad~---------~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~~~eV~~l~ 126 (436)
T PRK05335 78 LI-MEAADA---------HRVPAGGALAVDREGFSEYVTEALENHPLITVIREEVTEIP 126 (436)
T ss_pred hh-eecccc---------cCCCCccceecCHHHHHHHHHHHHHcCCCcEEEccchhccc
Confidence 00 111000 0011122 357888899999999999999998866677764
No 152
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.89 E-value=3.3e-08 Score=110.17 Aligned_cols=164 Identities=24% Similarity=0.282 Sum_probs=88.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC-ccc-c-cccc----c--chHH-HHHHh-----Cch--hHH
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD-RIV-G-ELLQ----P--GGYL-KLIEL-----GLE--DCV 121 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~-~~~-g-~~l~----~--~~~~-~l~~~-----g~~--~~~ 121 (506)
.++||+|||||.+||++|+.+++.|.+|+|+||.+.... ... + .++. + .+.+ .+... |+. +.+
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~~~sg~~~~g~~gi~~~~~~~~ds~e~~~~Dt~~~g~gl~d~~~v 91 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVRHSGALAMGMDGVNNAVIPGKAEPEDYVAEITRANDGIVNQRTV 91 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccccCCCcccCCchhhhcccCCCccCHHHHHHHHHhhcCCCCCHHHH
Confidence 469999999999999999999999999999999864211 100 0 0111 0 0111 11110 110 001
Q ss_pred hhc--------ccceecceEEEE--CCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcC---CCEEEEece-EEE
Q 010623 122 EQI--------DAQRVFGYALFK--DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASL---PNVRLEQGT-VTS 187 (506)
Q Consensus 122 ~~~--------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~---~~v~i~~~~-v~~ 187 (506)
..+ ......|+.+.. +|......+. ....... ..-.-..+...|.+.+.+. .++.+.... +++
T Consensus 92 ~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~~--~~~~~~~-~~~tG~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~ 168 (897)
T PRK13800 92 YQTATRGFAMVQRLERYGVKFEKDEHGEYAVRRVH--RSGSYVL-PMPEGKDVKKALYRVLRQRSMRERIRIENRLMPVR 168 (897)
T ss_pred HHHHHhHHHHHHHHHHcCCceeeCCCCCEeeeeec--cCCCccc-cCCCchhHHHHHHHHHHHhhhcCCcEEEeceeeEE
Confidence 100 000112222221 1111000000 0000000 0001123445555555443 256776664 788
Q ss_pred EEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623 188 LLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL 225 (506)
Q Consensus 188 ~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v 225 (506)
+..+++++.||.+.+ .+|+.+.+.|+.||.|+|+++.+
T Consensus 169 Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 207 (897)
T PRK13800 169 VLTEGGRAVGAAALNTRTGEFVTVGAKAVILATGPCGRL 207 (897)
T ss_pred EEeeCCEEEEEEEEecCCCcEEEEECCEEEECCCccccC
Confidence 887788899988754 57887889999999999999865
No 153
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.88 E-value=2e-08 Score=106.17 Aligned_cols=114 Identities=20% Similarity=0.225 Sum_probs=74.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG 138 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 138 (506)
..+||+|||||||||++|..|+++|++|+|+|+... |..+... ..+.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~------GG~~~~~-----------~~i~---------------- 49 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDF------GGQITIT-----------SEVV---------------- 49 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC------CceEEec-----------cccc----------------
Confidence 359999999999999999999999999999998631 1111000 0000
Q ss_pred ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623 139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC 218 (506)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A 218 (506)
.++. ...+....+.+.+.+.+.+. ++++..++|+++..+++. ..+...+|+ +.++.||.|
T Consensus 50 -----~~pg--------~~~~~~~~l~~~l~~~~~~~-gv~~~~~~V~~i~~~~~~---~~V~~~~g~---~~a~~lVlA 109 (555)
T TIGR03143 50 -----NYPG--------ILNTTGPELMQEMRQQAQDF-GVKFLQAEVLDVDFDGDI---KTIKTARGD---YKTLAVLIA 109 (555)
T ss_pred -----cCCC--------CcCCCHHHHHHHHHHHHHHc-CCEEeccEEEEEEecCCE---EEEEecCCE---EEEeEEEEC
Confidence 0000 00112335667777777776 677777778888765442 234444553 568999999
Q ss_pred cCCcccc
Q 010623 219 DGCFSNL 225 (506)
Q Consensus 219 dG~~S~v 225 (506)
+|++...
T Consensus 110 TGa~p~~ 116 (555)
T TIGR03143 110 TGASPRK 116 (555)
T ss_pred CCCccCC
Confidence 9997643
No 154
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.87 E-value=2.4e-08 Score=102.19 Aligned_cols=38 Identities=29% Similarity=0.416 Sum_probs=34.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEecCCCC
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKDGRR-VHVIERDLSE 95 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~-v~vvE~~~~~ 95 (506)
...+||+|||||++|+++|+.|.+.|++ ++|+||+...
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~ 44 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDV 44 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCc
Confidence 3468999999999999999999999998 9999999643
No 155
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.87 E-value=1.2e-08 Score=106.01 Aligned_cols=35 Identities=20% Similarity=0.409 Sum_probs=32.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~ 92 (506)
...|||+||||||+|+++|..|+++|.+|+|+|+.
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 36 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 34699999999999999999999999999999986
No 156
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.87 E-value=1.9e-08 Score=101.60 Aligned_cols=142 Identities=20% Similarity=0.171 Sum_probs=84.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchH----HHHHHhCchhHHhhcccceecceE
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGY----LKLIELGLEDCVEQIDAQRVFGYA 133 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~----~~l~~~g~~~~~~~~~~~~~~~~~ 133 (506)
...-+|+|||||||||++|..|.++|++|+++||.+.....- ...+..- .+.+.+-
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW---~y~~~~~~~~ss~Y~~l~----------------- 63 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLW---KYTENVEVVHSSVYKSLR----------------- 63 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceE---eecCcccccccchhhhhh-----------------
Confidence 346799999999999999999999999999999996532210 0111100 0011000
Q ss_pred EEECCce-eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCC-EEEEece-EEEEEeeC-CeEEEEEEEeCCccEEE
Q 010623 134 LFKDGNR-TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPN-VRLEQGT-VTSLLEEK-GTIKGVQYKTKAGEELT 209 (506)
Q Consensus 134 ~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~-v~i~~~~-v~~~~~~~-~~v~~v~v~~~~G~~~~ 209 (506)
.....+. ...++|+.+ ....+.-++.++.+.|.+.|++.+- ..+++++ |..+...+ ++. .|...+..+...+
T Consensus 64 tn~pKe~~~~~dfpf~~---~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW-~V~~~~~~~~~~~ 139 (448)
T KOG1399|consen 64 TNLPKEMMGYSDFPFPE---RDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKW-RVTTKDNGTQIEE 139 (448)
T ss_pred ccCChhhhcCCCCCCcc---cCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCce-eEEEecCCcceeE
Confidence 0000000 001122111 1112234566899999999998731 2466664 88888777 443 3555544432233
Q ss_pred EEcCeEEeecCCcc
Q 010623 210 AYAPLTIVCDGCFS 223 (506)
Q Consensus 210 i~a~~vV~AdG~~S 223 (506)
.-+|.||.|+|.+.
T Consensus 140 ~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 140 EIFDAVVVCTGHYV 153 (448)
T ss_pred EEeeEEEEcccCcC
Confidence 45999999999983
No 157
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.87 E-value=2.7e-08 Score=103.28 Aligned_cols=36 Identities=33% Similarity=0.379 Sum_probs=33.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
+.+|||+||||||+|+.+|..|++.|.+|+|+|+.+
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 37 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS 37 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 346999999999999999999999999999999874
No 158
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.83 E-value=7.2e-07 Score=93.74 Aligned_cols=62 Identities=23% Similarity=0.237 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccchhhc
Q 010623 163 RFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSL 229 (506)
Q Consensus 163 ~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l 229 (506)
.+.+.|.+.+++. +++++.+ .|+++..+++++++|+ ..+|++ ++||.||.|.+......+.+
T Consensus 220 ~l~~al~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~V~--~~~g~~--~~ad~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 220 ALVAAMAKLAEDL-GGELRLNAEVIRIETEGGRATAVH--LADGER--LDADAVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHHHHHHHHC-CCEEEECCeEEEEEeeCCEEEEEE--ECCCCE--EECCEEEECCcHHHHHHHhc
Confidence 5677888888887 6677777 5999988877765554 566764 56999999998876665554
No 159
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.83 E-value=1.7e-06 Score=89.92 Aligned_cols=61 Identities=23% Similarity=0.401 Sum_probs=45.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCCCCccc-----c-------ccc---ccchHHHHHHhCchhHH
Q 010623 61 ADVIVVGAGVAGAALANTLAKD----GRRVHVIERDLSEPDRIV-----G-------ELL---QPGGYLKLIELGLEDCV 121 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~----G~~v~vvE~~~~~~~~~~-----g-------~~l---~~~~~~~l~~~g~~~~~ 121 (506)
.||+|||||++||++|+.|+++ |++|+|+|+++....+.. | ..+ .++..+.++++|+.+.+
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~~~ 82 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLEHVL 82 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCCCccc
Confidence 6999999999999999999999 999999999876543211 1 111 23356778888886543
No 160
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.83 E-value=4.9e-08 Score=101.38 Aligned_cols=34 Identities=38% Similarity=0.565 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
+|||+||||||+|+++|..|+++|.+|+|+||..
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 5999999999999999999999999999999874
No 161
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.83 E-value=6.2e-08 Score=98.33 Aligned_cols=138 Identities=20% Similarity=0.254 Sum_probs=77.2
Q ss_pred EEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc--cccc----cccchH-HHHHHh--------------CchhHHh
Q 010623 64 IVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI--VGEL----LQPGGY-LKLIEL--------------GLEDCVE 122 (506)
Q Consensus 64 vIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~--~g~~----l~~~~~-~~l~~~--------------g~~~~~~ 122 (506)
+|||||++|+++|+.|+++|++|+|+||++...... .|.+ .+.... +..... +..+.+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 699999999999999999999999999987644321 1100 111111 111111 1111111
Q ss_pred hcccceecceEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEE
Q 010623 123 QIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYK 201 (506)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~ 201 (506)
-+ ...+..+...... ..+| ..-....+.+.|.+.+++. +++++.+ +|+++..+++. +.+.
T Consensus 81 ~~---~~~Gv~~~~~~~g--~~~p----------~~~~a~~v~~~L~~~l~~~-gv~i~~~~~V~~i~~~~~~---~~v~ 141 (400)
T TIGR00275 81 FF---ESLGLELKVEEDG--RVFP----------CSDSAADVLDALLNELKEL-GVEILTNSKVKSIKKDDNG---FGVE 141 (400)
T ss_pred HH---HHcCCeeEEecCC--EeEC----------CCCCHHHHHHHHHHHHHHC-CCEEEeCCEEEEEEecCCe---EEEE
Confidence 00 0011111100000 0011 0012346778888888877 6778777 48998776553 3333
Q ss_pred eCCccEEEEEcCeEEeecCCcc
Q 010623 202 TKAGEELTAYAPLTIVCDGCFS 223 (506)
Q Consensus 202 ~~~G~~~~i~a~~vV~AdG~~S 223 (506)
. +++ ++.+|.||.|+|.+|
T Consensus 142 ~-~~~--~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 142 T-SGG--EYEADKVILATGGLS 160 (400)
T ss_pred E-CCc--EEEcCEEEECCCCcc
Confidence 4 343 367999999999987
No 162
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.83 E-value=3.4e-08 Score=103.81 Aligned_cols=113 Identities=27% Similarity=0.361 Sum_probs=76.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD 137 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 137 (506)
...+||+||||||+|+++|..|+++|++|+|+|+.. |..+.. ..++. . +
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~-------GG~~~~-------~~~~~----~-----------~-- 257 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERF-------GGQVLD-------TMGIE----N-----------F-- 257 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-------CCeeec-------cCccc----c-----------c--
Confidence 346999999999999999999999999999997641 111100 00000 0 0
Q ss_pred CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623 138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI 216 (506)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV 216 (506)
..++ .....++.+.|.+.+++. +++++.+ +|+++..+++. +.+...+|++ +++|.||
T Consensus 258 -----~~~~-----------~~~~~~l~~~l~~~~~~~-gv~i~~~~~V~~I~~~~~~---~~V~~~~g~~--i~a~~vV 315 (517)
T PRK15317 258 -----ISVP-----------ETEGPKLAAALEEHVKEY-DVDIMNLQRASKLEPAAGL---IEVELANGAV--LKAKTVI 315 (517)
T ss_pred -----CCCC-----------CCCHHHHHHHHHHHHHHC-CCEEEcCCEEEEEEecCCe---EEEEECCCCE--EEcCEEE
Confidence 0000 123346778888888887 6888876 59998876553 3444566753 6799999
Q ss_pred eecCCcc
Q 010623 217 VCDGCFS 223 (506)
Q Consensus 217 ~AdG~~S 223 (506)
.|+|..+
T Consensus 316 iAtG~~~ 322 (517)
T PRK15317 316 LATGARW 322 (517)
T ss_pred ECCCCCc
Confidence 9999976
No 163
>PRK07233 hypothetical protein; Provisional
Probab=98.81 E-value=1.6e-06 Score=89.28 Aligned_cols=36 Identities=42% Similarity=0.555 Sum_probs=33.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD 97 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~ 97 (506)
+|+|||||++||++|+.|+++|++|+|+|+++....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG 36 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG 36 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Confidence 699999999999999999999999999999986544
No 164
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.80 E-value=8.4e-07 Score=92.00 Aligned_cols=59 Identities=32% Similarity=0.356 Sum_probs=45.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc------------ccc----ccccchHHHHHHhCchhH
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI------------VGE----LLQPGGYLKLIELGLEDC 120 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~------------~g~----~l~~~~~~~l~~~g~~~~ 120 (506)
+|+|||||++||++|+.|+++|++|+|+|+++....+. .|. ...++..+.++++|+.+.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 75 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDR 75 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccc
Confidence 58999999999999999999999999999987544321 110 123667788899998654
No 165
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.79 E-value=3.5e-08 Score=102.51 Aligned_cols=35 Identities=49% Similarity=0.650 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~ 94 (506)
.+||+||||||+|+++|+.|+++|.+|+|+||.+.
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~ 39 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRN 39 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCEEEEEecccc
Confidence 59999999999999999999999999999999643
No 166
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.78 E-value=6e-08 Score=96.10 Aligned_cols=67 Identities=24% Similarity=0.331 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHcCCCEEEEece-EEEEEeeCC-eEEEEEEEeCCccEEEEEcCeEEeecCCcccchhh
Q 010623 162 GRFVQRLREKAASLPNVRLEQGT-VTSLLEEKG-TIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRS 228 (506)
Q Consensus 162 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~-~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~ 228 (506)
..+...|.+.+++.+++++..+. +.++..+++ .+.|+.+...+++..+++++.||.|+|+-+.+=..
T Consensus 133 ~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~~ 201 (518)
T COG0029 133 KEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLYAY 201 (518)
T ss_pred HHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCcccccc
Confidence 46889999999999999999995 899988887 55588887665566789999999999998866443
No 167
>PLN02487 zeta-carotene desaturase
Probab=98.78 E-value=3.2e-06 Score=88.79 Aligned_cols=62 Identities=21% Similarity=0.323 Sum_probs=48.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc------ccc----------ccccchHHHHHHhCchhHH
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI------VGE----------LLQPGGYLKLIELGLEDCV 121 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~------~g~----------~l~~~~~~~l~~~g~~~~~ 121 (506)
..+|+|||||++||++|+.|+++|++|+|+|+.+...... .|. ...++..++++++|+.+.+
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~ 152 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENL 152 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCcccc
Confidence 4699999999999999999999999999999987654211 111 1235577889999987654
No 168
>PRK14694 putative mercuric reductase; Provisional
Probab=98.78 E-value=1.4e-07 Score=98.11 Aligned_cols=35 Identities=31% Similarity=0.446 Sum_probs=32.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
.++||+||||||+|+++|..|++.|.+|+|+|+..
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~ 39 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERGT 39 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence 36999999999999999999999999999999863
No 169
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.76 E-value=1e-07 Score=98.31 Aligned_cols=34 Identities=44% Similarity=0.625 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
+|||+||||||+|+++|+.|+++|++|+|+|+.+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~ 36 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN 36 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence 5999999999999999999999999999999974
No 170
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.76 E-value=6.4e-08 Score=101.05 Aligned_cols=170 Identities=21% Similarity=0.261 Sum_probs=93.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccc--cccc-----cc-----hHHHHH-Hh-----Cc--
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVG--ELLQ-----PG-----GYLKLI-EL-----GL-- 117 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g--~~l~-----~~-----~~~~l~-~~-----g~-- 117 (506)
..++||||||||.|||.+|+.+++.|.+|+|+||.+........ .+++ .. +.+.+. .. ++
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~d 83 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLGD 83 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcCC
Confidence 34699999999999999999999999999999998654432210 0111 00 111110 00 01
Q ss_pred hhHHhhcccc--------eecceEE--EECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EE
Q 010623 118 EDCVEQIDAQ--------RVFGYAL--FKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VT 186 (506)
Q Consensus 118 ~~~~~~~~~~--------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~ 186 (506)
.+.+..+... ...+..+ +.+|......+.............-.-..+...|.+.+.+..++.+.... ++
T Consensus 84 qd~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~ 163 (562)
T COG1053 84 QDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVL 163 (562)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhh
Confidence 1111111000 0011111 11121111111100000011111111235778888888886566666664 89
Q ss_pred EEEeeCCe-EEEEEEEe-CCccEEEEEcCeEEeecCCcccchh
Q 010623 187 SLLEEKGT-IKGVQYKT-KAGEELTAYAPLTIVCDGCFSNLRR 227 (506)
Q Consensus 187 ~~~~~~~~-v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~vR~ 227 (506)
++..++++ +.|+...+ .+|+.+.++++.||.|+|+...+..
T Consensus 164 ~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g~~~~ 206 (562)
T COG1053 164 DLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAGRLYP 206 (562)
T ss_pred hheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCceEEEe
Confidence 98866554 77776655 6788888889999999999984433
No 171
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.74 E-value=7.3e-06 Score=85.27 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=44.1
Q ss_pred cEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCCcccc------------ccc---ccchHHHHHHhCchhH
Q 010623 62 DVIVVGAGVAGAALANTLAKD------GRRVHVIERDLSEPDRIVG------------ELL---QPGGYLKLIELGLEDC 120 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~------G~~v~vvE~~~~~~~~~~g------------~~l---~~~~~~~l~~~g~~~~ 120 (506)
+|+|||||++||++|+.|++. |++|+|+|+++....+... ..+ +++..+.++++|+.+.
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~~~ 82 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLEEE 82 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHcCCccc
Confidence 699999999999999999986 4899999999765543211 112 2334577888888654
Q ss_pred H
Q 010623 121 V 121 (506)
Q Consensus 121 ~ 121 (506)
+
T Consensus 83 ~ 83 (463)
T PRK12416 83 M 83 (463)
T ss_pred e
Confidence 3
No 172
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.74 E-value=3.5e-06 Score=87.47 Aligned_cols=60 Identities=27% Similarity=0.355 Sum_probs=45.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc------cc----------ccccchHHHHHHhCchhHH
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV------GE----------LLQPGGYLKLIELGLEDCV 121 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~------g~----------~l~~~~~~~l~~~g~~~~~ 121 (506)
+|+|||||++||++|+.|++.|++|+|+|+++....+.. |. ...++..+.++++|+.+.+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~ 76 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNL 76 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccc
Confidence 589999999999999999999999999999876543211 11 0124456778888887554
No 173
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.73 E-value=9.1e-08 Score=100.46 Aligned_cols=113 Identities=27% Similarity=0.373 Sum_probs=75.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD 137 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 137 (506)
...+||+||||||+|+++|..|++.|++|+|+|... |..+.. ..++. +.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~-------GG~~~~-------~~~~~----~~------------- 258 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERI-------GGQVKD-------TVGIE----NL------------- 258 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-------CCcccc-------CcCcc----cc-------------
Confidence 346999999999999999999999999999997531 111100 00000 00
Q ss_pred CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623 138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI 216 (506)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV 216 (506)
...+ .....++...+.+.+++. ++.++.+ +|+++..+++. +.+..++|+ ++++|.+|
T Consensus 259 -----~~~~-----------~~~~~~l~~~l~~~l~~~-gv~i~~~~~V~~I~~~~~~---~~v~~~~g~--~i~~d~lI 316 (515)
T TIGR03140 259 -----ISVP-----------YTTGSQLAANLEEHIKQY-PIDLMENQRAKKIETEDGL---IVVTLESGE--VLKAKSVI 316 (515)
T ss_pred -----cccC-----------CCCHHHHHHHHHHHHHHh-CCeEEcCCEEEEEEecCCe---EEEEECCCC--EEEeCEEE
Confidence 0000 012345677788888777 7888776 58888766553 344456675 46799999
Q ss_pred eecCCcc
Q 010623 217 VCDGCFS 223 (506)
Q Consensus 217 ~AdG~~S 223 (506)
.|+|...
T Consensus 317 lAtGa~~ 323 (515)
T TIGR03140 317 VATGARW 323 (515)
T ss_pred ECCCCCc
Confidence 9999864
No 174
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.72 E-value=1.3e-07 Score=98.48 Aligned_cols=33 Identities=39% Similarity=0.460 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEec
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIER 91 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~ 91 (506)
.+|||+||||||+|+++|+.|++.|.+|+|+|+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 369999999999999999999999999999998
No 175
>PLN02507 glutathione reductase
Probab=98.72 E-value=1.9e-07 Score=97.50 Aligned_cols=34 Identities=35% Similarity=0.511 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~ 92 (506)
.+|||+||||||+|+.+|..|+++|.+|+|+|+.
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~ 57 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSANFGAKVGICELP 57 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 3699999999999999999999999999999973
No 176
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.72 E-value=1.5e-07 Score=97.61 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
+|||+||||||+|+++|..++++|.+|+|+|++.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~ 36 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRS 36 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 5999999999999999999999999999999753
No 177
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.71 E-value=1.6e-07 Score=96.67 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHcCCCEEEEece-EEEEEee--CCeEEEEEEEeCCccEEEEEcCeEEeecCCcccchhhc
Q 010623 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEE--KGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSL 229 (506)
Q Consensus 163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~--~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l 229 (506)
.+.+.|.+.+++. +++++.++ |+++..+ ++.+++|... .++ .+++|+.||.|+|.++..++++
T Consensus 124 ~l~~~L~~~a~~~-Gv~i~~~~~v~~l~~~~~~g~v~gv~~~-~~~--~~i~ak~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 124 ALTNALYSSAERL-GVEIRYGIAVDRIPPEAFDGAHDGPLTT-VGT--HRITTQALVLAAGGLGANRDWL 189 (432)
T ss_pred HHHHHHHHHHHHc-CCEEEeCCEEEEEEecCCCCeEEEEEEc-CCc--EEEEcCEEEEcCCCcccCHHHH
Confidence 5778888888887 67887774 9999876 4667766642 222 3578999999999999877655
No 178
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.71 E-value=1.7e-07 Score=96.70 Aligned_cols=33 Identities=36% Similarity=0.578 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~ 92 (506)
+|||+||||||+|+++|+.++++|++|+|+|+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 589999999999999999999999999999985
No 179
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.71 E-value=1.6e-07 Score=94.29 Aligned_cols=115 Identities=27% Similarity=0.315 Sum_probs=71.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc-----ccc---ccccchHHHHHHhCchh-HHhhcccceecc
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI-----VGE---LLQPGGYLKLIELGLED-CVEQIDAQRVFG 131 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~-----~g~---~l~~~~~~~l~~~g~~~-~~~~~~~~~~~~ 131 (506)
+||+|||||++|+.+|+.|+++|++|+|+|+++...... .+. ....++...+...|++. .+...+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~~~~~~~~elvcs~Slgg~~l~~a~Gil~~ei~~lg~----- 75 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPAHHTEDLAELVCSNSLGAKALDRAAGLLKTEMRQLSS----- 75 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCchhhhhhhhhhcccccccchhHHhccCcHHHHHhhcCe-----
Confidence 489999999999999999999999999999876532210 000 12233455666677663 2222111
Q ss_pred eEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEE
Q 010623 132 YALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLL 189 (506)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~ 189 (506)
. ......... .+ ......++|..+.+.+.+.+.+.+++++....++++.
T Consensus 76 l-~~~~ad~~~--Ip------agg~~~vDR~lF~~~L~~qLe~~pnItviq~eV~dL~ 124 (433)
T TIGR00137 76 L-IITAADRHA--VP------AGGALAVDRGIFSRSLTEQVASHPNVTLIREEVTEIP 124 (433)
T ss_pred e-eeehhhhhC--CC------CCceEEehHHHHHHHHHHHHHhCCCcEEEeeeeEEEc
Confidence 1 111000000 00 1112356888899999999998888887766666554
No 180
>PRK10262 thioredoxin reductase; Provisional
Probab=98.70 E-value=2.5e-07 Score=91.28 Aligned_cols=113 Identities=14% Similarity=0.224 Sum_probs=70.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG 138 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 138 (506)
...||+||||||+||++|..|+++|++++++|+.. .. | .+... .. .
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~-~g----g-~~~~~-------------------~~-----~---- 50 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KG----G-QLTTT-------------------TE-----V---- 50 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeec-CC----C-ceecC-------------------ce-----E----
Confidence 35899999999999999999999999999999652 11 1 11000 00 0
Q ss_pred ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623 139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC 218 (506)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A 218 (506)
..++.. ...++...+.+.+.+.+... +..++.++|+++...++. +++..+++ ++++|.||.|
T Consensus 51 ----~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~~~~~---~~v~~~~~---~~~~d~vilA 112 (321)
T PRK10262 51 ----ENWPGD-------PNDLTGPLLMERMHEHATKF-ETEIIFDHINKVDLQNRP---FRLTGDSG---EYTCDALIIA 112 (321)
T ss_pred ----CCCCCC-------CCCCCHHHHHHHHHHHHHHC-CCEEEeeEEEEEEecCCe---EEEEecCC---EEEECEEEEC
Confidence 000000 00122334566677777766 456666677777766553 34443333 3679999999
Q ss_pred cCCcc
Q 010623 219 DGCFS 223 (506)
Q Consensus 219 dG~~S 223 (506)
+|.+.
T Consensus 113 tG~~~ 117 (321)
T PRK10262 113 TGASA 117 (321)
T ss_pred CCCCC
Confidence 99875
No 181
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.68 E-value=9.2e-08 Score=99.77 Aligned_cols=140 Identities=21% Similarity=0.225 Sum_probs=77.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHH-HhCchhHHhhcccceecceEEEECCce
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLI-ELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~-~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
+|+|||||++||++|..|.+.|++++++||++... | ++...-..-. ...+.+.+.. +-..
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iG----G--~W~~~~~~~~g~~~~y~sl~~-------------n~sk 63 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIG----G--LWRYTENPEDGRSSVYDSLHT-------------NTSK 63 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSS----G--GGCHSTTCCCSEGGGSTT-B--------------SS-G
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCC----c--cCeeCCcCCCCccccccceEE-------------eeCc
Confidence 79999999999999999999999999999996432 1 1110000000 0001111100 0000
Q ss_pred eee---ecCCcCCCCCcccccccchHHHHHHHHHHHcCCC-EEEEece-EEEEEeeCCe--EEEEEEEe-CCccEEEEEc
Q 010623 141 TQI---SYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPN-VRLEQGT-VTSLLEEKGT--IKGVQYKT-KAGEELTAYA 212 (506)
Q Consensus 141 ~~~---~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~-v~i~~~~-v~~~~~~~~~--v~~v~v~~-~~G~~~~i~a 212 (506)
... ++|+.+ . .....++.++.+.|.+.++..+- ..+++++ |+++...++. ...+++++ .+|+..+-.+
T Consensus 64 ~~~~fsdfp~p~---~-~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~f 139 (531)
T PF00743_consen 64 EMMAFSDFPFPE---D-YPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEF 139 (531)
T ss_dssp GGSCCTTS-HCC---C-CSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEE
T ss_pred hHhcCCCcCCCC---C-CCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEe
Confidence 001 111111 1 11245788999999999998732 2466664 9999876431 11234444 4565555568
Q ss_pred CeEEeecCCccc
Q 010623 213 PLTIVCDGCFSN 224 (506)
Q Consensus 213 ~~vV~AdG~~S~ 224 (506)
|.||.|+|.++.
T Consensus 140 D~VvvatG~~~~ 151 (531)
T PF00743_consen 140 DAVVVATGHFSK 151 (531)
T ss_dssp CEEEEEE-SSSC
T ss_pred CeEEEcCCCcCC
Confidence 999999999883
No 182
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.68 E-value=2.3e-07 Score=95.63 Aligned_cols=34 Identities=41% Similarity=0.662 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
+|||+||||||+|+++|..|++.|.+|+|+||.+
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 5999999999999999999999999999999975
No 183
>PRK06116 glutathione reductase; Validated
Probab=98.67 E-value=2.1e-07 Score=96.38 Aligned_cols=34 Identities=44% Similarity=0.580 Sum_probs=32.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~ 92 (506)
.+|||+||||||+|+++|+.|+++|++|+|+|+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 4699999999999999999999999999999986
No 184
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.67 E-value=1.3e-07 Score=88.07 Aligned_cols=161 Identities=22% Similarity=0.317 Sum_probs=96.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc--cccccccchHHHHHHhCchhHHhhccccee-----cc---
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI--VGELLQPGGYLKLIELGLEDCVEQIDAQRV-----FG--- 131 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~--~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~-----~~--- 131 (506)
.|+|||+|.|||+++..+-..|-.|+++|+.......+ ...+|+....+..+.+++.|...-+..... .+
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e 90 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE 90 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHH
Confidence 79999999999999999988877799999987655433 234566666676667766544322111100 00
Q ss_pred -----------eEEEECCceeeeecCCcC--------CCCCc--ccccccchHHHHHHH----HHHHcCCC-EEEEec-e
Q 010623 132 -----------YALFKDGNRTQISYPLEK--------FHSDV--AGRGFHNGRFVQRLR----EKAASLPN-VRLEQG-T 184 (506)
Q Consensus 132 -----------~~~~~~~~~~~~~~~~~~--------~~~~~--~~~~i~~~~l~~~L~----~~~~~~~~-v~i~~~-~ 184 (506)
..-|..++ +...++. .+... .+...+--.+..+|. +.+.+.|. +.+... +
T Consensus 91 Lm~~La~~S~~AvewL~~e---f~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nsk 167 (477)
T KOG2404|consen 91 LMEKLAANSASAVEWLRGE---FDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSK 167 (477)
T ss_pred HHHHHHhcCHHHHHHHhhh---cccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcce
Confidence 00010000 0000000 00000 000011113444444 44444432 344444 6
Q ss_pred EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccc
Q 010623 185 VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNL 225 (506)
Q Consensus 185 v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~v 225 (506)
|+++..++++|.+|++.+.+|+...+.++.||.|+|+++--
T Consensus 168 vv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~ys 208 (477)
T KOG2404|consen 168 VVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGYS 208 (477)
T ss_pred eeeeecCCCeEEEEEEEcCCCCccceecCceEEecCCcCcC
Confidence 99999999999999999999988778899999999999854
No 185
>PRK07208 hypothetical protein; Provisional
Probab=98.66 E-value=4.6e-07 Score=94.70 Aligned_cols=40 Identities=35% Similarity=0.435 Sum_probs=35.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD 97 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~ 97 (506)
+...||+|||||++||++|+.|+++|++|+|+|+++....
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG 41 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG 41 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 4568999999999999999999999999999999875443
No 186
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.66 E-value=9.1e-07 Score=91.35 Aligned_cols=61 Identities=18% Similarity=0.183 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCCCEEEEece-EEEEEee--C--CeEEEEEEEeCC--ccEEEEEcCeEEeecCCccc
Q 010623 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEE--K--GTIKGVQYKTKA--GEELTAYAPLTIVCDGCFSN 224 (506)
Q Consensus 163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~--~--~~v~~v~v~~~~--G~~~~i~a~~vV~AdG~~S~ 224 (506)
.+..-|.+.++++ |++++.++ |+++..+ + +.|+++.+..++ ++......|+||.+.|....
T Consensus 227 SLV~PL~~~Le~~-GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 227 SLVLPLIKYLEDH-GVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred HHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcc
Confidence 4667788899988 78888885 9999874 3 457888876422 22223458999999998764
No 187
>PRK13748 putative mercuric reductase; Provisional
Probab=98.64 E-value=5.6e-07 Score=95.91 Aligned_cols=34 Identities=38% Similarity=0.465 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~ 92 (506)
.++||+||||||+|+++|..|+++|.+|+|+|++
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 3699999999999999999999999999999986
No 188
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.63 E-value=5.9e-07 Score=93.34 Aligned_cols=34 Identities=35% Similarity=0.469 Sum_probs=32.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~ 92 (506)
.++||+||||||+|+++|..|+++|.+|+|+|++
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 3599999999999999999999999999999986
No 189
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.63 E-value=9.9e-06 Score=80.10 Aligned_cols=41 Identities=44% Similarity=0.605 Sum_probs=36.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDR 98 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~ 98 (506)
....||+|||||.+||++|+.|.+.|++|+|+|.++....+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR 45 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGR 45 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCce
Confidence 34689999999999999999999999999999998765543
No 190
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.63 E-value=4.9e-07 Score=89.48 Aligned_cols=78 Identities=22% Similarity=0.202 Sum_probs=61.7
Q ss_pred ccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCcc-cchhhccC
Q 010623 155 AGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFS-NLRRSLCN 231 (506)
Q Consensus 155 ~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S-~vR~~l~~ 231 (506)
.+.-++-+.|.+.|.+.+.+.+++++++++ |+++.+.+++-+.|.+.+ .+|+..+++|++|+...|+.| ++-+..++
T Consensus 174 ~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi 253 (488)
T PF06039_consen 174 EGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGI 253 (488)
T ss_pred CCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCC
Confidence 345677889999999999998889999885 999999877645566654 467778899999999999998 55555665
Q ss_pred C
Q 010623 232 P 232 (506)
Q Consensus 232 ~ 232 (506)
+
T Consensus 254 ~ 254 (488)
T PF06039_consen 254 P 254 (488)
T ss_pred h
Confidence 3
No 191
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.58 E-value=2.8e-07 Score=95.75 Aligned_cols=32 Identities=34% Similarity=0.552 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~ 92 (506)
|||+||||||+|+++|..|+++|.+|+|+|+.
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~ 33 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEKE 33 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 89999999999999999999999999999993
No 192
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.58 E-value=3.2e-07 Score=83.75 Aligned_cols=36 Identities=39% Similarity=0.589 Sum_probs=32.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP 96 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~ 96 (506)
.+|+|||+||+|++||+.|+..|++|+|+||.....
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvG 37 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVG 37 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcc
Confidence 369999999999999999999999999999986543
No 193
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.57 E-value=4.1e-07 Score=93.93 Aligned_cols=33 Identities=30% Similarity=0.516 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~ 92 (506)
+|||+||||||+|+++|+.|++.|.+|+|+||.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~ 34 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK 34 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc
Confidence 599999999999999999999999999999986
No 194
>PTZ00058 glutathione reductase; Provisional
Probab=98.57 E-value=4e-07 Score=95.66 Aligned_cols=38 Identities=32% Similarity=0.510 Sum_probs=34.4
Q ss_pred CCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623 55 GECPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (506)
Q Consensus 55 ~~~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~ 92 (506)
+....+|||+||||||+|.++|..+++.|.+|+|+||+
T Consensus 43 ~~~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~ 80 (561)
T PTZ00058 43 KKPRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD 80 (561)
T ss_pred cCCCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence 33446799999999999999999999999999999986
No 195
>PRK14727 putative mercuric reductase; Provisional
Probab=98.57 E-value=1.3e-06 Score=90.94 Aligned_cols=36 Identities=33% Similarity=0.437 Sum_probs=33.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
+.++||+||||||+|+++|..|+++|.+|+|+|+..
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~ 49 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGAD 49 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 346999999999999999999999999999999874
No 196
>PRK06370 mercuric reductase; Validated
Probab=98.56 E-value=5.8e-07 Score=93.36 Aligned_cols=37 Identities=46% Similarity=0.555 Sum_probs=33.8
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
|+.++||+||||||+|+++|+.|++.|++|+|+|+..
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 38 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL 38 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 3456999999999999999999999999999999863
No 197
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.54 E-value=1.6e-07 Score=93.92 Aligned_cols=146 Identities=23% Similarity=0.287 Sum_probs=90.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC-Cccccccccc----chHHHHHHhCc-hhHHhhcccceecce
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP-DRIVGELLQP----GGYLKLIELGL-EDCVEQIDAQRVFGY 132 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~-~~~~g~~l~~----~~~~~l~~~g~-~~~~~~~~~~~~~~~ 132 (506)
..|||+|||||-||+-||++.||.|.++.++--+...- .-+|.-.+.. .-++..+.||= ....... .+
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~-----~~- 76 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADK-----AG- 76 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhh-----cC-
Confidence 35999999999999999999999999999998875321 1111111110 01112222221 1111000 00
Q ss_pred EEEECCceeeeecCCcCCCCCccc----ccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCC-eEEEEEEEeCCccE
Q 010623 133 ALFKDGNRTQISYPLEKFHSDVAG----RGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKG-TIKGVQYKTKAGEE 207 (506)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~-~v~~v~v~~~~G~~ 207 (506)
+.+.+.+....|.. ..+++......+.+.+...++..++.+.|+++..+++ +|.||. +.+|..
T Consensus 77 ----------IQ~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~--t~~G~~ 144 (621)
T COG0445 77 ----------IQFRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVV--TADGPE 144 (621)
T ss_pred ----------CchhhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEE--eCCCCe
Confidence 11111111111111 2356666777888888888999999999999988666 477666 677874
Q ss_pred EEEEcCeEEeecCCccc
Q 010623 208 LTAYAPLTIVCDGCFSN 224 (506)
Q Consensus 208 ~~i~a~~vV~AdG~~S~ 224 (506)
+.|+.||.++|-+-.
T Consensus 145 --~~a~aVVlTTGTFL~ 159 (621)
T COG0445 145 --FHAKAVVLTTGTFLR 159 (621)
T ss_pred --eecCEEEEeeccccc
Confidence 669999999997743
No 198
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.54 E-value=1.5e-07 Score=85.95 Aligned_cols=32 Identities=41% Similarity=0.693 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999999999998874
No 199
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.53 E-value=1.1e-06 Score=89.57 Aligned_cols=65 Identities=20% Similarity=0.250 Sum_probs=50.8
Q ss_pred cccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCccc
Q 010623 154 VAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN 224 (506)
Q Consensus 154 ~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~ 224 (506)
|....++...+.++|...|.+. |+.+.++ .|+++.-..++..+|+ +.-|. |++..+|+|+|.|..
T Consensus 179 P~DG~~DP~~lC~ala~~A~~~-GA~viE~cpV~~i~~~~~~~~gVe--T~~G~---iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 179 PGDGVMDPAGLCQALARAASAL-GALVIENCPVTGLHVETDKFGGVE--TPHGS---IETECVVNAAGVWAR 244 (856)
T ss_pred CCCcccCHHHHHHHHHHHHHhc-CcEEEecCCcceEEeecCCcccee--ccCcc---eecceEEechhHHHH
Confidence 3445678889999999999999 5666666 5999987766655555 66675 779999999999983
No 200
>PLN02546 glutathione reductase
Probab=98.52 E-value=5.6e-07 Score=94.60 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=31.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEec
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIER 91 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~ 91 (506)
.+|||+||||||+|..+|..|+++|.+|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 359999999999999999999999999999996
No 201
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.52 E-value=3.9e-05 Score=78.37 Aligned_cols=41 Identities=27% Similarity=0.383 Sum_probs=36.7
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 010623 57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD 97 (506)
Q Consensus 57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~ 97 (506)
|+.++||+|||+|.+|+.+|..|++.|.+|+++|+++....
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG 41 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGG 41 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCc
Confidence 34579999999999999999999999999999999976443
No 202
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.52 E-value=1.3e-07 Score=69.57 Aligned_cols=32 Identities=44% Similarity=0.604 Sum_probs=28.8
Q ss_pred EECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623 65 VVGAGVAGAALANTLAKDGRRVHVIERDLSEP 96 (506)
Q Consensus 65 IVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~ 96 (506)
|||||++||++|+.|++.|++|+|+|+++...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 89999999999999999999999999997543
No 203
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.52 E-value=1.4e-06 Score=90.53 Aligned_cols=145 Identities=19% Similarity=0.227 Sum_probs=76.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchH---HHHHHhCchhHHhhcccceecceEEEECC
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGY---LKLIELGLEDCVEQIDAQRVFGYALFKDG 138 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~---~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 138 (506)
||+||||||+|+.+|..|+++|.+|+|+||... .|..++.+.+ ..+....+.+...+. ...++.. ...
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~-----gG~c~~~gciPsK~l~~~a~~~~~~~~~---~~~g~~~-~~~ 73 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDGL-----GGAAVLTDCVPSKTLIATAEVRTELRRA---AELGIRF-IDD 73 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccCC-----CCcccccCCcchHHHHHHHHHHHHHHHH---HhCCccc-ccC
Confidence 899999999999999999999999999998742 1222222111 122221222222111 0011110 000
Q ss_pred ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEE--eeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623 139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLL--EEKGTIKGVQYKTKAGEELTAYAPLTI 216 (506)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~--~~~~~v~~v~v~~~~G~~~~i~a~~vV 216 (506)
......++ ... .... .+ ...+...+.+.+.+. +++++.++++.+. .+++ .+++.+.+|+..++++|.||
T Consensus 74 ~~~~~~~~--~~~-~~~~-~~-~~~~~~~~~~~l~~~-gV~~~~g~~~~~~~~~~~~---~v~V~~~~g~~~~~~~d~lV 144 (466)
T PRK07845 74 GEARVDLP--AVN-ARVK-AL-AAAQSADIRARLERE-GVRVIAGRGRLIDPGLGPH---RVKVTTADGGEETLDADVVL 144 (466)
T ss_pred cccccCHH--HHH-HHHH-HH-HHHHHHHHHHHHHHC-CCEEEEEEEEEeecccCCC---EEEEEeCCCceEEEecCEEE
Confidence 00000000 000 0000 00 011223444555555 7999999876644 3334 35566667764568899999
Q ss_pred eecCCccc
Q 010623 217 VCDGCFSN 224 (506)
Q Consensus 217 ~AdG~~S~ 224 (506)
.|+|....
T Consensus 145 iATGs~p~ 152 (466)
T PRK07845 145 IATGASPR 152 (466)
T ss_pred EcCCCCCC
Confidence 99998764
No 204
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.51 E-value=1.1e-06 Score=85.60 Aligned_cols=61 Identities=23% Similarity=0.312 Sum_probs=45.8
Q ss_pred HHHHHHHHHHcCCCEEEEece-EEEEEee--CCeEEEEEEEeCCcc--EEEEEcCeEEeecCCccc
Q 010623 164 FVQRLREKAASLPNVRLEQGT-VTSLLEE--KGTIKGVQYKTKAGE--ELTAYAPLTIVCDGCFSN 224 (506)
Q Consensus 164 l~~~L~~~~~~~~~v~i~~~~-v~~~~~~--~~~v~~v~v~~~~G~--~~~i~a~~vV~AdG~~S~ 224 (506)
........+.+.++.+++.++ |+++..+ ++++++|++.+.++. ...+.++.||.|.|+-..
T Consensus 194 ~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~T 259 (296)
T PF00732_consen 194 AATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGT 259 (296)
T ss_dssp HHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHH
T ss_pred hhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCC
Confidence 344444455566789999885 9999654 788999999988776 556789999999998554
No 205
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.51 E-value=1.8e-06 Score=97.26 Aligned_cols=36 Identities=42% Similarity=0.569 Sum_probs=33.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~ 94 (506)
..+||+|||||||||++|+.|++.|++|+|+|+.+.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~ 197 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPE 197 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 468999999999999999999999999999999864
No 206
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.47 E-value=7.4e-07 Score=77.86 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=27.0
Q ss_pred EEECCCHHHHHHHHHHHHC-----CCcEEEEecCC
Q 010623 64 IVVGAGVAGAALANTLAKD-----GRRVHVIERDL 93 (506)
Q Consensus 64 vIVGgG~aGl~~A~~La~~-----G~~v~vvE~~~ 93 (506)
+|||||++|++++..|.++ ..+|+|+|+.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 5999999999999999887 57999999964
No 207
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.47 E-value=1.4e-06 Score=90.40 Aligned_cols=32 Identities=34% Similarity=0.561 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
+|+||||||+|+++|..|++.|.+|+|+||++
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 79999999999999999999999999999974
No 208
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.46 E-value=2.6e-06 Score=88.65 Aligned_cols=33 Identities=36% Similarity=0.539 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~ 92 (506)
+|||+||||||+|+.+|+.+++.|.+|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 489999999999999999999999999999985
No 209
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.44 E-value=1.5e-05 Score=82.89 Aligned_cols=33 Identities=33% Similarity=0.477 Sum_probs=31.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
|||+||||||+|+++|..|+++|.+|+|+||.+
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 699999999999999999999999999999864
No 210
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.43 E-value=3.6e-06 Score=85.22 Aligned_cols=57 Identities=25% Similarity=0.318 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCc
Q 010623 163 RFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCF 222 (506)
Q Consensus 163 ~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~ 222 (506)
++.+.|.+.+++. +++++.+ +|++++.+++++..+. ..+|+..+++||.||.|+|.+
T Consensus 260 rL~~aL~~~l~~~-Gv~I~~g~~V~~v~~~~~~V~~v~--~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 260 RLQNALRRAFERL-GGRIMPGDEVLGAEFEGGRVTAVW--TRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHhC-CCEEEeCCEEEEEEEeCCEEEEEE--eeCCceEEEECCEEEEeCCCc
Confidence 4667788888777 6777777 5999988777655433 445665678899999999975
No 211
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.42 E-value=3.9e-06 Score=87.71 Aligned_cols=33 Identities=30% Similarity=0.515 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~ 92 (506)
.|||+||||||+|+++|..|+++|.+|+|+|+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 589999999999999999999999999999974
No 212
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.42 E-value=4.4e-06 Score=86.89 Aligned_cols=57 Identities=14% Similarity=0.195 Sum_probs=45.0
Q ss_pred cCCCEEEEece-EEEEEeeC---CeEEEEEEEeC-CccEEEEEcCeEEeecCCcccchhhcc
Q 010623 174 SLPNVRLEQGT-VTSLLEEK---GTIKGVQYKTK-AGEELTAYAPLTIVCDGCFSNLRRSLC 230 (506)
Q Consensus 174 ~~~~v~i~~~~-v~~~~~~~---~~v~~v~v~~~-~G~~~~i~a~~vV~AdG~~S~vR~~l~ 230 (506)
+.++++++.+. |++++.++ +++++|++.+. +|+..+++|+.||.|.|+--+.|-.+.
T Consensus 225 ~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~ 286 (544)
T TIGR02462 225 PSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVN 286 (544)
T ss_pred cCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHh
Confidence 45678888875 89988653 36888988775 688888999999999998877766654
No 213
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.41 E-value=4.5e-06 Score=63.87 Aligned_cols=76 Identities=26% Similarity=0.357 Sum_probs=57.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCcee
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRT 141 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (506)
.|+|||||+.|+-+|..|++.|.+|+|+|+.+.....
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~------------------------------------------- 37 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPG------------------------------------------- 37 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTT-------------------------------------------
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhh-------------------------------------------
Confidence 4899999999999999999999999999998642200
Q ss_pred eeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEE
Q 010623 142 QISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQY 200 (506)
Q Consensus 142 ~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v 200 (506)
....+...+.+.+++. ++++++++ +.++..+++++. |++
T Consensus 38 ------------------~~~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~~~~-V~~ 77 (80)
T PF00070_consen 38 ------------------FDPDAAKILEEYLRKR-GVEVHTNTKVKEIEKDGDGVE-VTL 77 (80)
T ss_dssp ------------------SSHHHHHHHHHHHHHT-TEEEEESEEEEEEEEETTSEE-EEE
T ss_pred ------------------cCHHHHHHHHHHHHHC-CCEEEeCCEEEEEEEeCCEEE-EEE
Confidence 0112444556666666 89999996 999998887644 443
No 214
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.41 E-value=6.8e-06 Score=82.28 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCc-cc
Q 010623 163 RFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCF-SN 224 (506)
Q Consensus 163 ~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~-S~ 224 (506)
++.+.|.+.+++. |+++..+ +|+++..+++++++|.. .++...+++||.+|.|+|+| |.
T Consensus 264 RL~~aL~~~~~~~-Gg~il~g~~V~~i~~~~~~v~~V~t--~~g~~~~l~AD~vVLAaGaw~S~ 324 (419)
T TIGR03378 264 RLEEALKHRFEQL-GGVMLPGDRVLRAEFEGNRVTRIHT--RNHRDIPLRADHFVLASGSFFSN 324 (419)
T ss_pred HHHHHHHHHHHHC-CCEEEECcEEEEEEeeCCeEEEEEe--cCCccceEECCEEEEccCCCcCH
Confidence 6777799999988 5566666 69999988887765543 34422357899999999999 74
No 215
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.39 E-value=3.6e-06 Score=87.43 Aligned_cols=34 Identities=47% Similarity=0.610 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~ 92 (506)
.+|||+||||||+|+++|..|++.|.+|+|+|++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3599999999999999999999999999999984
No 216
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.37 E-value=3.4e-06 Score=85.81 Aligned_cols=36 Identities=36% Similarity=0.448 Sum_probs=33.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
+.+||++||||||+|..+|..+++.|.+|.++|+.+
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 357999999999999999999999999999999985
No 217
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.34 E-value=4.3e-06 Score=86.85 Aligned_cols=34 Identities=32% Similarity=0.414 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEecC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKD-GRRVHVIERD 92 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~-G~~v~vvE~~ 92 (506)
.+|||+||||||+|..+|..+++. |.+|+|+|+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 369999999999999999999996 9999999984
No 218
>PRK09897 hypothetical protein; Provisional
Probab=98.31 E-value=1.6e-05 Score=82.92 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDG--RRVHVIERDLS 94 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G--~~v~vvE~~~~ 94 (506)
.+|+||||||+|+++|..|.+++ ++|+|+|++..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~ 37 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADE 37 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCC
Confidence 47999999999999999998865 58999999754
No 219
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.31 E-value=1.4e-05 Score=75.11 Aligned_cols=37 Identities=46% Similarity=0.737 Sum_probs=34.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE 95 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~ 95 (506)
.++||+|||+|.+||.+|..|+..|.+|+|+|+..+.
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeq 40 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQ 40 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccc
Confidence 3689999999999999999999999999999998653
No 220
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.25 E-value=2e-05 Score=74.11 Aligned_cols=58 Identities=14% Similarity=0.277 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCc
Q 010623 163 RFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCF 222 (506)
Q Consensus 163 ~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~ 222 (506)
++.+.|....++.|++.+...+|.+.+..+++|+.+.. .++..+.++||..|.|+|.+
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~t--rn~~diP~~a~~~VLAsGsf 316 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYT--RNHADIPLRADFYVLASGSF 316 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEe--cccccCCCChhHeeeecccc
Confidence 45566777778876655544479999999998876654 45555678899999999964
No 221
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.25 E-value=6.4e-06 Score=85.18 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCC
Q 010623 62 DVIVVGAGVAGAALANTLAKDG--RRVHVIERDLS 94 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G--~~v~vvE~~~~ 94 (506)
+|+|||||++|+++|..|++.| .+|+|+|+++.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~ 36 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDI 36 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCc
Confidence 6999999999999999999975 58999999864
No 222
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.23 E-value=1.7e-05 Score=84.83 Aligned_cols=34 Identities=32% Similarity=0.453 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~ 92 (506)
.+|||+||||||+|..+|..++++|.+|+|+|++
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 3799999999999999999999999999999975
No 223
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.23 E-value=1.3e-06 Score=91.06 Aligned_cols=54 Identities=26% Similarity=0.296 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCC
Q 010623 163 RFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGC 221 (506)
Q Consensus 163 ~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~ 221 (506)
.+.+.|.+.+++. |++++.+ +|+++..++++ ++++.+.+| ..+++|.||.+-..
T Consensus 225 al~~aL~~~~~~~-Gg~I~~~~~V~~I~v~~g~--g~~~~~~~g--~~~~ad~vv~~~~~ 279 (487)
T COG1233 225 ALVDALAELAREH-GGEIRTGAEVSQILVEGGK--GVGVRTSDG--ENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHc-CCEEECCCceEEEEEeCCc--ceEEecccc--ceeccceeEecCch
Confidence 5778899999998 6778877 59999998887 456666777 34679999887766
No 224
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=1.4e-06 Score=82.12 Aligned_cols=115 Identities=23% Similarity=0.252 Sum_probs=77.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD 137 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 137 (506)
+..|||+||||||+|.++|++.+|.|++.-|+-.+ ..| +.|+.++++..+.-
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aer------fGG--------QvldT~~IENfIsv-------------- 260 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER------FGG--------QVLDTMGIENFISV-------------- 260 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhh------hCC--------eeccccchhheecc--------------
Confidence 35699999999999999999999999987665332 111 12333444321100
Q ss_pred CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623 138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI 216 (506)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV 216 (506)
+ ...-.+|...|.+++++. .+++.+. +.++++..+....-.+++.++|.. ..++-+|
T Consensus 261 --------~-----------~teGpkl~~ale~Hv~~Y-~vDimn~qra~~l~~a~~~~~l~ev~l~nGav--LkaktvI 318 (520)
T COG3634 261 --------P-----------ETEGPKLAAALEAHVKQY-DVDVMNLQRASKLEPAAVEGGLIEVELANGAV--LKARTVI 318 (520)
T ss_pred --------c-----------cccchHHHHHHHHHHhhc-CchhhhhhhhhcceecCCCCccEEEEecCCce--eccceEE
Confidence 0 012336888899999988 6777766 477777642211136677888975 5599999
Q ss_pred eecCCc
Q 010623 217 VCDGCF 222 (506)
Q Consensus 217 ~AdG~~ 222 (506)
.++|++
T Consensus 319 lstGAr 324 (520)
T COG3634 319 LATGAR 324 (520)
T ss_pred EecCcc
Confidence 999985
No 225
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.22 E-value=8.8e-06 Score=83.84 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCC
Q 010623 62 DVIVVGAGVAGAALANTLAKD--GRRVHVIERDLS 94 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~ 94 (506)
+|+|||||++|+.+|..|++. +.+|+|+|+++.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~ 37 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 799999999999999999987 689999999864
No 226
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.21 E-value=2.5e-05 Score=81.23 Aligned_cols=37 Identities=43% Similarity=0.548 Sum_probs=33.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE 95 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~ 95 (506)
...+|+||||||+|+++|..|++.|++|+|+|+.+..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~ 178 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI 178 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 3579999999999999999999999999999998654
No 227
>PRK02106 choline dehydrogenase; Validated
Probab=98.21 E-value=3.2e-05 Score=82.28 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=44.8
Q ss_pred HHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccc
Q 010623 167 RLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNL 225 (506)
Q Consensus 167 ~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~v 225 (506)
.....+.+.++.++..+. |+++..+++++++|++.+.++....+.++.||.|.|+...-
T Consensus 205 ~~l~~a~~~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP 264 (560)
T PRK02106 205 AYLDPALKRPNLTIVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGAINSP 264 (560)
T ss_pred HhhccccCCCCcEEEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCH
Confidence 333445556788888885 99999888888999987766655557899999999987643
No 228
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.21 E-value=2.7e-05 Score=80.70 Aligned_cols=37 Identities=35% Similarity=0.466 Sum_probs=33.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE 95 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~ 95 (506)
...+|+||||||+|+++|..|++.|++|+|+|+.+..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 3579999999999999999999999999999998653
No 229
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.19 E-value=4.6e-06 Score=79.88 Aligned_cols=38 Identities=29% Similarity=0.346 Sum_probs=34.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP 96 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~ 96 (506)
.++||+|||+||.|-.+|+..++.|++.+.+|++....
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LG 75 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLG 75 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccC
Confidence 36999999999999999999999999999999986543
No 230
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.19 E-value=2.7e-05 Score=82.36 Aligned_cols=59 Identities=24% Similarity=0.276 Sum_probs=43.4
Q ss_pred HHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCC-cc
Q 010623 165 VQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGC-FS 223 (506)
Q Consensus 165 ~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~-~S 223 (506)
...+...+.+.++.+++.+. |+++..+++++++|++...++....+.++.||.|.|+ +|
T Consensus 196 ~~~~l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~S 256 (532)
T TIGR01810 196 ARAYLHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINS 256 (532)
T ss_pred HHHHhhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCC
Confidence 33444555556789999885 9999988888999988765433334579999999999 44
No 231
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.18 E-value=1.5e-05 Score=78.81 Aligned_cols=153 Identities=22% Similarity=0.192 Sum_probs=72.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEecCCCCCCcccccccccchH--HHHHHhCchhHHhhcccceecceEEE-
Q 010623 60 DADVIVVGAGVAGAALANTLAKDG-RRVHVIERDLSEPDRIVGELLQPGGY--LKLIELGLEDCVEQIDAQRVFGYALF- 135 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G-~~v~vvE~~~~~~~~~~g~~l~~~~~--~~l~~~g~~~~~~~~~~~~~~~~~~~- 135 (506)
.+|+++||.||++|++|+.|...+ .++..+||.+...-++ |..+....+ ..|+.+ +.-. .+...+.+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~-gmll~~~~~q~~fl~Dl-----vt~~--~P~s~~sfln 73 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHP-GMLLPGARMQVSFLKDL-----VTLR--DPTSPFSFLN 73 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTG-GG--SS-B-SS-TTSSS-----STTT---TTSTTSHHH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCC-ccCCCCCcccccccccc-----CcCc--CCCCcccHHH
Confidence 389999999999999999999887 8999999987543332 111110000 011100 0000 000000000
Q ss_pred ---ECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCC---eEEEEEEEeCCccEE
Q 010623 136 ---KDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKG---TIKGVQYKTKAGEEL 208 (506)
Q Consensus 136 ---~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~---~v~~v~v~~~~G~~~ 208 (506)
..+.. ..|- ........|.++.+.|.-.+.+.+. .+.++ +|+++...++ ....|+..+.+|+..
T Consensus 74 YL~~~~rl--~~f~------~~~~~~p~R~ef~dYl~Wva~~~~~-~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~ 144 (341)
T PF13434_consen 74 YLHEHGRL--YEFY------NRGYFFPSRREFNDYLRWVAEQLDN-QVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGE 144 (341)
T ss_dssp HHHHTT-H--HHHH------HH--SS-BHHHHHHHHHHHHCCGTT-TEEESEEEEEEEEEEETTEEEEEEEEEETTS-EE
T ss_pred HHHHcCCh--hhhh------hcCCCCCCHHHHHHHHHHHHHhCCC-ceEECCEEEEEEEecCCCccEEEEEEeecCCCee
Confidence 00000 0000 0000124677888888887777754 24555 5998886543 233355545677777
Q ss_pred EEEcCeEEeecCCcccchhhc
Q 010623 209 TAYAPLTIVCDGCFSNLRRSL 229 (506)
Q Consensus 209 ~i~a~~vV~AdG~~S~vR~~l 229 (506)
++.|+.||.|+|..-.+.+.+
T Consensus 145 ~~~ar~vVla~G~~P~iP~~~ 165 (341)
T PF13434_consen 145 TYRARNVVLATGGQPRIPEWF 165 (341)
T ss_dssp EEEESEEEE----EE---GGG
T ss_pred EEEeCeEEECcCCCCCCCcch
Confidence 889999999999554444443
No 232
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.18 E-value=5.5e-06 Score=92.21 Aligned_cols=34 Identities=35% Similarity=0.375 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
..+|+|||||||||++|..|++.|++|+|+|+.+
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~ 339 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH 339 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence 5789999999999999999999999999999985
No 233
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=98.16 E-value=0.00011 Score=68.32 Aligned_cols=217 Identities=17% Similarity=0.147 Sum_probs=107.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-------CcEEEEecCCCCCCccc--ccccccc-----hHHHHHHhCc-----hhH
Q 010623 60 DADVIVVGAGVAGAALANTLAKDG-------RRVHVIERDLSEPDRIV--GELLQPG-----GYLKLIELGL-----EDC 120 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G-------~~v~vvE~~~~~~~~~~--g~~l~~~-----~~~~l~~~g~-----~~~ 120 (506)
..+|+|||+|..||++|+.+.+.+ .+|+|++-++.+...+. +....+. +.+.-++++- +..
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AGl~~p~~~~~~~~~~~~~w~k~tf~~l~~ 82 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAGLFRPDLSDGTPQEINRQWGKDTFNYLAH 82 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccccccccceeecccCCCCcHHHHHHHHHHHHHHHHH
Confidence 479999999999999998888854 58999987765443222 1122222 2333333332 122
Q ss_pred Hhhccccee------cceEEEECCcee-------eeecCCc-----------C---CCCCcccccccchHHHHHHHHHHH
Q 010623 121 VEQIDAQRV------FGYALFKDGNRT-------QISYPLE-----------K---FHSDVAGRGFHNGRFVQRLREKAA 173 (506)
Q Consensus 121 ~~~~~~~~~------~~~~~~~~~~~~-------~~~~~~~-----------~---~~~~~~~~~i~~~~l~~~L~~~~~ 173 (506)
+........ .++..+...... .+-+.+. . +......+..+-..+...|.+.+.
T Consensus 83 l~rs~~a~~aGV~l~sg~~ls~~e~~~~~~~~w~diV~~fr~l~e~EL~~f~~~~~~G~~~Tt~~sE~~~ylpyl~k~l~ 162 (342)
T KOG3923|consen 83 LARSEEAGEAGVCLVSGHILSDSESLDDQQRSWGDIVYGFRDLTERELLGFPDYSTYGIHFTTYLSEGPKYLPYLKKRLT 162 (342)
T ss_pred HhccccccccceEEeeeeeeccCCCchhhhhhHHhhhhhhhcCCHHHhcCCCCccccceeEEEeeccchhhhHHHHHHHH
Confidence 222111122 222222210000 0000000 0 011112234556678899999999
Q ss_pred cCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccchhhccCCCCCCccceeeEEEeccCCCCC
Q 010623 174 SLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFE 253 (506)
Q Consensus 174 ~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~ 253 (506)
+. |+++...+|.++.+-. + -.+|+||+|+|-+|.. ..+.+. -+..+|.+.. +..|
T Consensus 163 e~-Gvef~~r~v~~l~E~~-----------~-----~~~DVivNCtGL~a~~--L~gDd~---~yPiRGqVl~---V~Ap 217 (342)
T KOG3923|consen 163 EN-GVEFVQRRVESLEEVA-----------R-----PEYDVIVNCTGLGAGK--LAGDDD---LYPIRGQVLK---VDAP 217 (342)
T ss_pred hc-CcEEEEeeeccHHHhc-----------c-----CCCcEEEECCcccccc--ccCCcc---eeeccceEEE---eeCC
Confidence 98 6666666666653221 1 1289999999998742 222221 2334555543 2333
Q ss_pred CeeEEEecCCCcEEEEecCCCeEEEEEEec-CCCCCCCCchHHHHHHHHh
Q 010623 254 NHGHVVLADPSPILFYPISSNEVRCLVDIP-GQKVPSISNGEMANYLKTV 302 (506)
Q Consensus 254 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 302 (506)
..-++.+.+....+.+|..+.- .+.-... ..-..++..++..+.+.+.
T Consensus 218 Wvkhf~~~D~~~ty~iP~~~~V-~lGg~~Q~g~w~~ei~~~D~~dIl~rc 266 (342)
T KOG3923|consen 218 WVKHFIYRDFSRTYIIPGTESV-TLGGTKQEGNWNLEITDEDRRDILERC 266 (342)
T ss_pred ceeEEEEecCCccEEecCCceE-EEccccccCcccCcCChhhHHHHHHHH
Confidence 3444555444434555554431 1111111 2222344555655555554
No 234
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.15 E-value=1.8e-05 Score=81.19 Aligned_cols=109 Identities=20% Similarity=0.209 Sum_probs=69.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 139 (506)
+.+|||||||.+|+.+|..|.+.+++|+|||+++... +.+ .+..... +
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~-------~~~----~l~~~~~--------------------g- 57 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML-------FTP----LLPQTTT--------------------G- 57 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc-------hhh----hHHHhcc--------------------c-
Confidence 4699999999999999999988789999999875311 111 0100000 0
Q ss_pred eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEe--------CCccEEEEE
Q 010623 140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKT--------KAGEELTAY 211 (506)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~--------~~G~~~~i~ 211 (506)
......+..-+.+.+... ++.+..++|++++.++..+ ++.. .+|. ++.
T Consensus 58 ------------------~~~~~~~~~~~~~~~~~~-~~~~i~~~V~~Id~~~~~v---~~~~~~~~~~~~~~g~--~i~ 113 (424)
T PTZ00318 58 ------------------TLEFRSICEPVRPALAKL-PNRYLRAVVYDVDFEEKRV---KCGVVSKSNNANVNTF--SVP 113 (424)
T ss_pred ------------------CCChHHhHHHHHHHhccC-CeEEEEEEEEEEEcCCCEE---EEecccccccccCCce--Eec
Confidence 001112222344445444 6888888999998777643 3311 2343 477
Q ss_pred cCeEEeecCCccc
Q 010623 212 APLTIVCDGCFSN 224 (506)
Q Consensus 212 a~~vV~AdG~~S~ 224 (506)
+|++|.|+|....
T Consensus 114 yD~LViAtGs~~~ 126 (424)
T PTZ00318 114 YDKLVVAHGARPN 126 (424)
T ss_pred CCEEEECCCcccC
Confidence 9999999998753
No 235
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=9.6e-06 Score=79.73 Aligned_cols=145 Identities=24% Similarity=0.375 Sum_probs=84.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC-CCcccccc---cccc-hHHHHHHh-CchhHHhhcccceecc
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE-PDRIVGEL---LQPG-GYLKLIEL-GLEDCVEQIDAQRVFG 131 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~-~~~~~g~~---l~~~-~~~~l~~~-g~~~~~~~~~~~~~~~ 131 (506)
+..|||+|||||-||+-+|.+.+|.|.+.+++-.+-.. ..-+|.-. +..+ -++..+.+ |+...+-.. . +
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~---s--~ 100 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQ---S--G 100 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhh---h--h
Confidence 45699999999999999999999999999999886421 11111100 1100 01111111 111111110 0 0
Q ss_pred eEEEECCceeeeecCCcCCCCCcc----cccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCe-----EEEEEEEe
Q 010623 132 YALFKDGNRTQISYPLEKFHSDVA----GRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGT-----IKGVQYKT 202 (506)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~-----v~~v~v~~ 202 (506)
+.|.+.+....|. -..++|..+...+.+.+...++..++.+.|.++.-.+++ +.||. .
T Consensus 101 -----------vq~k~LNrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~~V~dliv~~~~~~~~~~~gV~--l 167 (679)
T KOG2311|consen 101 -----------VQYKVLNRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREGAVADLIVEDPDDGHCVVSGVV--L 167 (679)
T ss_pred -----------hhHHHhhccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhhhhhheeeccCCCCceEEEEEE--E
Confidence 0111111111111 124677777777778888778899999998887643322 44554 4
Q ss_pred CCccEEEEEcCeEEeecCCc
Q 010623 203 KAGEELTAYAPLTIVCDGCF 222 (506)
Q Consensus 203 ~~G~~~~i~a~~vV~AdG~~ 222 (506)
.||+ .+.|+-||..+|-+
T Consensus 168 ~dgt--~v~a~~VilTTGTF 185 (679)
T KOG2311|consen 168 VDGT--VVYAESVILTTGTF 185 (679)
T ss_pred ecCc--EeccceEEEeeccc
Confidence 5786 47799999999976
No 236
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.13 E-value=5e-06 Score=77.59 Aligned_cols=165 Identities=19% Similarity=0.209 Sum_probs=89.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCCCcc---------cccccccchHHH---------H----
Q 010623 57 CPFDADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLSEPDRI---------VGELLQPGGYLK---------L---- 112 (506)
Q Consensus 57 ~~~~~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~~~~~~---------~g~~l~~~~~~~---------l---- 112 (506)
...++|.+|||||++|++.|.+|.-+ +.+|.|+|+..+...+. .|..+.|++++. +
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc 124 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYC 124 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHh
Confidence 34579999999999999999998866 89999999986543221 233445555432 1
Q ss_pred HHhCch-------------------hHHhhccc-ceecceEEEECCceeeeecCCc---CCCCCcccccccchHHHHHHH
Q 010623 113 IELGLE-------------------DCVEQIDA-QRVFGYALFKDGNRTQISYPLE---KFHSDVAGRGFHNGRFVQRLR 169 (506)
Q Consensus 113 ~~~g~~-------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~l~~~L~ 169 (506)
++-++. +.+...+. ....+.+....-+..... |.- ..-..|...+++...+...+.
T Consensus 125 ~e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~E-P~crgvkAl~sPhtGIvD~~~v~ls~~ 203 (453)
T KOG2665|consen 125 DEKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEME-PYCRGVKALLSPHTGIVDWGSVTLSFG 203 (453)
T ss_pred hhcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcC-hhhhhhhhhcCCCcceeehHHHHHHHH
Confidence 111110 00000000 011111111111000000 000 000123344567777777788
Q ss_pred HHHHcCCCEEEEeceEEEEEeeCCeE--EEEEEEeCCccEEEEEcCeEEeecCCccc
Q 010623 170 EKAASLPNVRLEQGTVTSLLEEKGTI--KGVQYKTKAGEELTAYAPLTIVCDGCFSN 224 (506)
Q Consensus 170 ~~~~~~~~v~i~~~~v~~~~~~~~~v--~~v~v~~~~G~~~~i~a~~vV~AdG~~S~ 224 (506)
+.....++-...+-++..+.+..+.. .-+++.+..|+ +++++++|.|.|-.|-
T Consensus 204 edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~e--e~r~~~~vtc~gl~sd 258 (453)
T KOG2665|consen 204 EDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGE--EKRTKNVVTCAGLQSD 258 (453)
T ss_pred HHHHHhcccccccceeccchhccCCCCCCceEEecCccc--eeEEeEEEEeccccHh
Confidence 88887755444333688887765421 12444444454 5779999999998874
No 237
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.11 E-value=4e-05 Score=79.68 Aligned_cols=102 Identities=25% Similarity=0.314 Sum_probs=73.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 139 (506)
.-+|+|||||++|+-+|..|++.|.+|+++|+.+...+ . .
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~---------~---------~---------------------- 209 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP---------G---------E---------------------- 209 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC---------C---------C----------------------
Confidence 35899999999999999999999999999999852100 0 0
Q ss_pred eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623 140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC 218 (506)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A 218 (506)
...+...+.+.+++. +++++.++ ++++..++++ +.+...+|+..++.+|.||.|
T Consensus 210 ---------------------~~~~~~~~~~~l~~~-gi~i~~~~~v~~i~~~~~~---v~v~~~~g~~~~i~~D~vi~a 264 (461)
T TIGR01350 210 ---------------------DAEVSKVVAKALKKK-GVKILTNTKVTAVEKNDDQ---VVYENKGGETETLTGEKVLVA 264 (461)
T ss_pred ---------------------CHHHHHHHHHHHHHc-CCEEEeCCEEEEEEEeCCE---EEEEEeCCcEEEEEeCEEEEe
Confidence 012333455566666 78888884 8888776664 334455664445789999999
Q ss_pred cCCcccch
Q 010623 219 DGCFSNLR 226 (506)
Q Consensus 219 dG~~S~vR 226 (506)
.|....+.
T Consensus 265 ~G~~p~~~ 272 (461)
T TIGR01350 265 VGRKPNTE 272 (461)
T ss_pred cCCcccCC
Confidence 99887654
No 238
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.08 E-value=5.8e-05 Score=76.94 Aligned_cols=102 Identities=25% Similarity=0.308 Sum_probs=75.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG 138 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 138 (506)
.+-.++|||||+.|+-.|..+++.|.+|+|+|+.+..-+ +
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp------------------~---------------------- 211 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP------------------G---------------------- 211 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC------------------c----------------------
Confidence 456799999999999999999999999999999863211 0
Q ss_pred ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623 139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV 217 (506)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~ 217 (506)
...++.+.+.+.+++ +++.++.++ ++.++..+++ +.+..++|+..++++|.|+.
T Consensus 212 ---------------------~D~ei~~~~~~~l~~-~gv~i~~~~~v~~~~~~~~~---v~v~~~~g~~~~~~ad~vLv 266 (454)
T COG1249 212 ---------------------EDPEISKELTKQLEK-GGVKILLNTKVTAVEKKDDG---VLVTLEDGEGGTIEADAVLV 266 (454)
T ss_pred ---------------------CCHHHHHHHHHHHHh-CCeEEEccceEEEEEecCCe---EEEEEecCCCCEEEeeEEEE
Confidence 011355566677777 589898886 7777777664 44445555433577999999
Q ss_pred ecCCcccc
Q 010623 218 CDGCFSNL 225 (506)
Q Consensus 218 AdG~~S~v 225 (506)
|.|..-++
T Consensus 267 AiGR~Pn~ 274 (454)
T COG1249 267 AIGRKPNT 274 (454)
T ss_pred ccCCccCC
Confidence 99976554
No 239
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.06 E-value=1.1e-05 Score=81.35 Aligned_cols=61 Identities=30% Similarity=0.370 Sum_probs=47.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCCccc-----c-------cc--cc-cchHHHHHHhCchhHHh
Q 010623 62 DVIVVGAGVAGAALANTLAKDG--RRVHVIERDLSEPDRIV-----G-------EL--LQ-PGGYLKLIELGLEDCVE 122 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G--~~v~vvE~~~~~~~~~~-----g-------~~--l~-~~~~~~l~~~g~~~~~~ 122 (506)
.|+|||||++||++|+.|++++ ++++|+|+++....... | +. .. +..++.++++|+.+.+.
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~ 79 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDKLL 79 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHhhc
Confidence 6899999999999999999999 99999999875443111 0 11 11 44567788999998886
No 240
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.05 E-value=7.5e-05 Score=77.68 Aligned_cols=103 Identities=19% Similarity=0.272 Sum_probs=72.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+...+. .
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~------------------~----------------------- 211 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN------------------E----------------------- 211 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc------------------c-----------------------
Confidence 58999999999999999999999999999986421100 0
Q ss_pred eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (506)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad 219 (506)
..++...+.+.+++. +++++.++ |+++..+++.+. +.+...+|+..++.+|.||.|.
T Consensus 212 --------------------d~~~~~~l~~~l~~~-gV~i~~~~~v~~i~~~~~~~~-v~~~~~~g~~~~i~~D~vi~a~ 269 (466)
T PRK07818 212 --------------------DAEVSKEIAKQYKKL-GVKILTGTKVESIDDNGSKVT-VTVSKKDGKAQELEADKVLQAI 269 (466)
T ss_pred --------------------CHHHHHHHHHHHHHC-CCEEEECCEEEEEEEeCCeEE-EEEEecCCCeEEEEeCEEEECc
Confidence 011333455556666 78888874 889876655332 4443346765568899999999
Q ss_pred CCcccch
Q 010623 220 GCFSNLR 226 (506)
Q Consensus 220 G~~S~vR 226 (506)
|....+.
T Consensus 270 G~~pn~~ 276 (466)
T PRK07818 270 GFAPRVE 276 (466)
T ss_pred CcccCCC
Confidence 9877653
No 241
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.04 E-value=5.7e-06 Score=85.37 Aligned_cols=39 Identities=36% Similarity=0.383 Sum_probs=35.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD 97 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~ 97 (506)
++.+|+|||||+|||+||..|.+.|++|+|+|.++....
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 468999999999999999999999999999999876554
No 242
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.04 E-value=3e-05 Score=78.86 Aligned_cols=35 Identities=29% Similarity=0.529 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEecCCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGR--RVHVIERDLS 94 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~~ 94 (506)
+.+|+|||||++|+++|..|+++|. +|+|+++.+.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~ 39 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERH 39 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 3589999999999999999999986 7999998854
No 243
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.04 E-value=7.7e-05 Score=79.42 Aligned_cols=36 Identities=31% Similarity=0.407 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE 95 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~ 95 (506)
.-+|+||||||+||++|..|++.|++|+|+|+.+..
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~ 172 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL 172 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 468999999999999999999999999999998653
No 244
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.03 E-value=1.8e-05 Score=79.57 Aligned_cols=105 Identities=16% Similarity=0.146 Sum_probs=65.5
Q ss_pred cEEEECCCHHHHHHHHHHHHC---CCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623 62 DVIVVGAGVAGAALANTLAKD---GRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG 138 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~---G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 138 (506)
+|+|||||++|+.+|..|.++ +.+|+|+|+++... +.+..-..+ .|.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~-------~~~~~~~~~--~g~--------------------- 50 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP-------YSGMLPGMI--AGH--------------------- 50 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc-------ccchhhHHH--hee---------------------
Confidence 589999999999999999643 68999999885321 111000000 000
Q ss_pred ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623 139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC 218 (506)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A 218 (506)
+...++...+.+.+.+. ++++..++|+++..+... |. ..+|++ +++|+||.|
T Consensus 51 --------------------~~~~~~~~~~~~~~~~~-gv~~~~~~v~~id~~~~~---V~--~~~g~~--~~yD~LviA 102 (364)
T TIGR03169 51 --------------------YSLDEIRIDLRRLARQA-GARFVIAEATGIDPDRRK---VL--LANRPP--LSYDVLSLD 102 (364)
T ss_pred --------------------CCHHHhcccHHHHHHhc-CCEEEEEEEEEEecccCE---EE--ECCCCc--ccccEEEEc
Confidence 00001111223334444 788888889998876653 33 456753 679999999
Q ss_pred cCCccc
Q 010623 219 DGCFSN 224 (506)
Q Consensus 219 dG~~S~ 224 (506)
+|+...
T Consensus 103 tG~~~~ 108 (364)
T TIGR03169 103 VGSTTP 108 (364)
T ss_pred cCCCCC
Confidence 998764
No 245
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=3e-05 Score=68.90 Aligned_cols=119 Identities=18% Similarity=0.290 Sum_probs=78.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD 137 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 137 (506)
....+|+|||.||++-++|+.+++..++.+|+|-.... .+.|++..
T Consensus 6 ~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~-------~i~pGGQL--------------------------- 51 (322)
T KOG0404|consen 6 THNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMAN-------GIAPGGQL--------------------------- 51 (322)
T ss_pred eeeeeEEEEccCchHHHHHHHHhhcccCceEEeeeecc-------CcCCCcee---------------------------
Confidence 34569999999999999999999999999999976321 12222110
Q ss_pred CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623 138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV 217 (506)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~ 217 (506)
......++++..|. .+.-.+|.+.+++...+. |.++...+|.++.....- .++.++.+ .+.||.||.
T Consensus 52 ----tTTT~veNfPGFPd--gi~G~~l~d~mrkqs~r~-Gt~i~tEtVskv~~sskp---F~l~td~~---~v~~~avI~ 118 (322)
T KOG0404|consen 52 ----TTTTDVENFPGFPD--GITGPELMDKMRKQSERF-GTEIITETVSKVDLSSKP---FKLWTDAR---PVTADAVIL 118 (322)
T ss_pred ----eeeeccccCCCCCc--ccccHHHHHHHHHHHHhh-cceeeeeehhhccccCCC---eEEEecCC---ceeeeeEEE
Confidence 00001111111111 234557899999999998 778888888888766552 33333333 366999999
Q ss_pred ecCCcc
Q 010623 218 CDGCFS 223 (506)
Q Consensus 218 AdG~~S 223 (506)
|+|+..
T Consensus 119 atGAsA 124 (322)
T KOG0404|consen 119 ATGASA 124 (322)
T ss_pred ecccce
Confidence 999743
No 246
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.01 E-value=7e-05 Score=75.67 Aligned_cols=98 Identities=22% Similarity=0.340 Sum_probs=70.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
-+|+|||||++|+-+|..|++.|.+|+++|+.+..... .
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~------------------~----------------------- 180 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS------------------L----------------------- 180 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch------------------h-----------------------
Confidence 47999999999999999999999999999987531100 0
Q ss_pred eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (506)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad 219 (506)
....+...+.+.+++. ++++..+ +++++..+++. +.+...+|+ ++.+|.||.|+
T Consensus 181 -------------------~~~~~~~~l~~~l~~~-gV~i~~~~~v~~i~~~~~~---~~v~~~~g~--~i~~D~vI~a~ 235 (377)
T PRK04965 181 -------------------MPPEVSSRLQHRLTEM-GVHLLLKSQLQGLEKTDSG---IRATLDSGR--SIEVDAVIAAA 235 (377)
T ss_pred -------------------CCHHHHHHHHHHHHhC-CCEEEECCeEEEEEccCCE---EEEEEcCCc--EEECCEEEECc
Confidence 0001233455556665 7888876 58888776553 344566776 46799999999
Q ss_pred CCccc
Q 010623 220 GCFSN 224 (506)
Q Consensus 220 G~~S~ 224 (506)
|..+.
T Consensus 236 G~~p~ 240 (377)
T PRK04965 236 GLRPN 240 (377)
T ss_pred CCCcc
Confidence 98764
No 247
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.99 E-value=0.00012 Score=79.13 Aligned_cols=36 Identities=28% Similarity=0.472 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE 95 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~ 95 (506)
..+|+||||||+|+++|..|++.|++|+|+|+.+..
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~ 228 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA 228 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 469999999999999999999999999999998654
No 248
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.98 E-value=0.00025 Score=73.72 Aligned_cols=101 Identities=18% Similarity=0.232 Sum_probs=71.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
-+|+|||||++|+-+|..|++.|.+|+++|+.+...+. .
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~----------------------- 211 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG------------------E----------------------- 211 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc------------------C-----------------------
Confidence 57999999999999999999999999999997532100 0
Q ss_pred eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCC-ccEEEEEcCeEEee
Q 010623 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKA-GEELTAYAPLTIVC 218 (506)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~-G~~~~i~a~~vV~A 218 (506)
...+...+.+.+++. ++.++.+ +++++..+++. +.+...+ |+..++.+|.||.|
T Consensus 212 --------------------~~~~~~~l~~~l~~~-gV~i~~~~~V~~i~~~~~~---v~v~~~~gg~~~~i~~D~vi~a 267 (462)
T PRK06416 212 --------------------DKEISKLAERALKKR-GIKIKTGAKAKKVEQTDDG---VTVTLEDGGKEETLEADYVLVA 267 (462)
T ss_pred --------------------CHHHHHHHHHHHHHc-CCEEEeCCEEEEEEEeCCE---EEEEEEeCCeeEEEEeCEEEEe
Confidence 001233445555555 7888888 49999877664 3343333 44446889999999
Q ss_pred cCCcccch
Q 010623 219 DGCFSNLR 226 (506)
Q Consensus 219 dG~~S~vR 226 (506)
.|......
T Consensus 268 ~G~~p~~~ 275 (462)
T PRK06416 268 VGRRPNTE 275 (462)
T ss_pred eCCccCCC
Confidence 99876553
No 249
>PLN02576 protoporphyrinogen oxidase
Probab=97.97 E-value=1e-05 Score=85.02 Aligned_cols=40 Identities=43% Similarity=0.429 Sum_probs=35.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCC
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKD-GRRVHVIERDLSEPD 97 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~-G~~v~vvE~~~~~~~ 97 (506)
..++||+|||||++||++|+.|++. |++|+|+|+++....
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG 50 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG 50 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 3457999999999999999999999 999999999976554
No 250
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=7.9e-06 Score=82.26 Aligned_cols=38 Identities=34% Similarity=0.390 Sum_probs=34.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDR 98 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~ 98 (506)
.+|+|+|||+|||+||+.|+++|++|+|+|+++....+
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk 38 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGK 38 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCce
Confidence 37999999999999999999999999999999876543
No 251
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.97 E-value=0.00012 Score=76.26 Aligned_cols=103 Identities=19% Similarity=0.252 Sum_probs=73.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
-+|+|||||..|+-+|..|++.|.+|+|+|+.+.... . .
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~---------~---------~----------------------- 222 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA---------A---------A----------------------- 222 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC---------c---------C-----------------------
Confidence 5899999999999999999999999999998753110 0 0
Q ss_pred eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (506)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad 219 (506)
..++...+.+.+++. ++.++.+ +|+++..+++.+. +.+.+.+|++.++.+|.||.|.
T Consensus 223 --------------------d~~~~~~~~~~l~~~-gi~i~~~~~v~~i~~~~~~v~-v~~~~~~g~~~~i~~D~vl~a~ 280 (475)
T PRK06327 223 --------------------DEQVAKEAAKAFTKQ-GLDIHLGVKIGEIKTGGKGVS-VAYTDADGEAQTLEVDKLIVSI 280 (475)
T ss_pred --------------------CHHHHHHHHHHHHHc-CcEEEeCcEEEEEEEcCCEEE-EEEEeCCCceeEEEcCEEEEcc
Confidence 011333444455555 7888887 5999987666442 4444445655568899999999
Q ss_pred CCcccch
Q 010623 220 GCFSNLR 226 (506)
Q Consensus 220 G~~S~vR 226 (506)
|....+.
T Consensus 281 G~~p~~~ 287 (475)
T PRK06327 281 GRVPNTD 287 (475)
T ss_pred CCccCCC
Confidence 9877653
No 252
>PRK07846 mycothione reductase; Reviewed
Probab=97.97 E-value=3.3e-05 Score=79.81 Aligned_cols=32 Identities=22% Similarity=0.530 Sum_probs=27.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
+|||+||||||+|.++|.. +.|.+|+|+|+..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence 3899999999999988865 4699999999863
No 253
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.95 E-value=0.00013 Score=75.71 Aligned_cols=100 Identities=22% Similarity=0.337 Sum_probs=71.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.... +.
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~------------------~~----------------------- 209 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP------------------GE----------------------- 209 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc------------------cc-----------------------
Confidence 5799999999999999999999999999998753100 00
Q ss_pred eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (506)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad 219 (506)
..++.+.+.+.+++. +++++.++ ++++..++.. +.+.. +|+..++.+|.||.|+
T Consensus 210 --------------------d~e~~~~l~~~L~~~-GI~i~~~~~V~~i~~~~~~---v~~~~-~g~~~~i~~D~vivA~ 264 (458)
T PRK06912 210 --------------------DEDIAHILREKLEND-GVKIFTGAALKGLNSYKKQ---ALFEY-EGSIQEVNAEFVLVSV 264 (458)
T ss_pred --------------------cHHHHHHHHHHHHHC-CCEEEECCEEEEEEEcCCE---EEEEE-CCceEEEEeCEEEEec
Confidence 012334455566665 78888875 8888765542 33433 4544468899999999
Q ss_pred CCcccch
Q 010623 220 GCFSNLR 226 (506)
Q Consensus 220 G~~S~vR 226 (506)
|....+.
T Consensus 265 G~~p~~~ 271 (458)
T PRK06912 265 GRKPRVQ 271 (458)
T ss_pred CCccCCC
Confidence 9887653
No 254
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.94 E-value=0.00012 Score=76.25 Aligned_cols=102 Identities=26% Similarity=0.292 Sum_probs=71.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 139 (506)
.-+|+|||||++|+-+|..|++.|.+|+|+|+.+...+ . .
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~---------~---------~---------------------- 219 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP---------T---------E---------------------- 219 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC---------c---------C----------------------
Confidence 35899999999999999999999999999999853110 0 0
Q ss_pred eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEee-CCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623 140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYKTKAGEELTAYAPLTIV 217 (506)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~~v~v~~~~G~~~~i~a~~vV~ 217 (506)
...+...+.+.+++. +++++.++ ++++..+ ++++. .+...+|+..++.+|.||.
T Consensus 220 ---------------------~~~~~~~l~~~l~~~-gI~i~~~~~v~~i~~~~~~~~~--~~~~~~g~~~~i~~D~vi~ 275 (472)
T PRK05976 220 ---------------------DAELSKEVARLLKKL-GVRVVTGAKVLGLTLKKDGGVL--IVAEHNGEEKTLEADKVLV 275 (472)
T ss_pred ---------------------CHHHHHHHHHHHHhc-CCEEEeCcEEEEEEEecCCCEE--EEEEeCCceEEEEeCEEEE
Confidence 011333445555565 78888885 8888752 34332 2233566655688999999
Q ss_pred ecCCcccc
Q 010623 218 CDGCFSNL 225 (506)
Q Consensus 218 AdG~~S~v 225 (506)
|.|....+
T Consensus 276 a~G~~p~~ 283 (472)
T PRK05976 276 SVGRRPNT 283 (472)
T ss_pred eeCCccCC
Confidence 99987655
No 255
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.94 E-value=1e-05 Score=84.70 Aligned_cols=63 Identities=19% Similarity=0.269 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccchhhcc
Q 010623 163 RFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLC 230 (506)
Q Consensus 163 ~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l~ 230 (506)
.+.+.|.+.+++. |++++.+ +|+++..+++++.+|+ ..+|++ ++||.||.|.|.+..+++.+.
T Consensus 230 ~l~~~L~~~~~~~-G~~i~~~~~V~~I~~~~~~~~gv~--~~~g~~--~~ad~vV~a~~~~~~~~~Ll~ 293 (493)
T TIGR02730 230 QIAESLVKGLEKH-GGQIRYRARVTKIILENGKAVGVK--LADGEK--IYAKRIVSNATRWDTFGKLLK 293 (493)
T ss_pred HHHHHHHHHHHHC-CCEEEeCCeeeEEEecCCcEEEEE--eCCCCE--EEcCEEEECCChHHHHHHhCC
Confidence 5778888889888 6677777 5999987777766665 456763 569999999999988877664
No 256
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.92 E-value=1.2e-05 Score=84.38 Aligned_cols=36 Identities=42% Similarity=0.646 Sum_probs=33.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP 96 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~ 96 (506)
.||+|||||++||++|..|++.|++|+|+||++.+.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~G 37 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPG 37 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 589999999999999999999999999999997653
No 257
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.92 E-value=1e-05 Score=83.86 Aligned_cols=58 Identities=29% Similarity=0.467 Sum_probs=43.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCCcccc-----------c-cc---ccchHHHHHHhCchh
Q 010623 62 DVIVVGAGVAGAALANTLAKDG--RRVHVIERDLSEPDRIVG-----------E-LL---QPGGYLKLIELGLED 119 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G--~~v~vvE~~~~~~~~~~g-----------~-~l---~~~~~~~l~~~g~~~ 119 (506)
+|+|||||++||+||+.|+++| ++|+|+|+++....+... . .+ .++...+++++|+.+
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~ 76 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKELGLED 76 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcHHHHHHHHHcCCcc
Confidence 6999999999999999999988 899999998765442211 1 11 123456778888764
No 258
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.92 E-value=0.00014 Score=75.69 Aligned_cols=100 Identities=21% Similarity=0.230 Sum_probs=72.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 139 (506)
.-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.... .+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------~~---------------------- 214 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS------------------FL---------------------- 214 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC------------------cC----------------------
Confidence 35799999999999999999999999999998752100 00
Q ss_pred eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623 140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC 218 (506)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A 218 (506)
..++...|.+.+++. ++.++.+ +++++..++++ +.+...+|+ ++.+|.||.|
T Consensus 215 ---------------------d~~~~~~l~~~l~~~-gI~v~~~~~v~~i~~~~~~---~~v~~~~g~--~i~~D~vi~a 267 (461)
T PRK05249 215 ---------------------DDEISDALSYHLRDS-GVTIRHNEEVEKVEGGDDG---VIVHLKSGK--KIKADCLLYA 267 (461)
T ss_pred ---------------------CHHHHHHHHHHHHHc-CCEEEECCEEEEEEEeCCe---EEEEECCCC--EEEeCEEEEe
Confidence 012334555556665 7888877 48888766553 344456665 4679999999
Q ss_pred cCCcccch
Q 010623 219 DGCFSNLR 226 (506)
Q Consensus 219 dG~~S~vR 226 (506)
+|......
T Consensus 268 ~G~~p~~~ 275 (461)
T PRK05249 268 NGRTGNTD 275 (461)
T ss_pred ecCCcccc
Confidence 99887654
No 259
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.91 E-value=0.00013 Score=74.29 Aligned_cols=98 Identities=23% Similarity=0.279 Sum_probs=69.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
-+|+|||||..|+-+|..|++.|.+|+|+|+.+....+ .
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------~------------------------- 183 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR----------------N------------------------- 183 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh----------------h-------------------------
Confidence 47999999999999999999999999999987521100 0
Q ss_pred eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (506)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad 219 (506)
....+...+.+.+++. +++++.++ ++++.. ++. +.+...+|++ +.||+||.|.
T Consensus 184 -------------------~~~~~~~~l~~~l~~~-GV~i~~~~~V~~i~~-~~~---~~v~l~~g~~--i~aD~Vv~a~ 237 (396)
T PRK09754 184 -------------------APPPVQRYLLQRHQQA-GVRILLNNAIEHVVD-GEK---VELTLQSGET--LQADVVIYGI 237 (396)
T ss_pred -------------------cCHHHHHHHHHHHHHC-CCEEEeCCeeEEEEc-CCE---EEEEECCCCE--EECCEEEECC
Confidence 0001333455555565 78888774 888865 332 3445667764 6799999999
Q ss_pred CCcccc
Q 010623 220 GCFSNL 225 (506)
Q Consensus 220 G~~S~v 225 (506)
|...+.
T Consensus 238 G~~pn~ 243 (396)
T PRK09754 238 GISAND 243 (396)
T ss_pred CCChhh
Confidence 987653
No 260
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.91 E-value=7.1e-05 Score=74.54 Aligned_cols=109 Identities=18% Similarity=0.258 Sum_probs=72.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDG--RRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD 137 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G--~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 137 (506)
+.+|||||||-+|+.+|..|.++- .++++|||++... +.| .| .+...
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl-------~~p----lL---------~eva~----------- 51 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL-------FTP----LL---------YEVAT----------- 51 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc-------cch----hh---------hhhhc-----------
Confidence 468999999999999999999974 8999999986311 111 11 00000
Q ss_pred CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623 138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV 217 (506)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~ 217 (506)
..++......-+.+.+...+++.+..++|+++..+..+|. .+++. .+.+|++|.
T Consensus 52 -------------------g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V~-----~~~~~--~i~YD~LVv 105 (405)
T COG1252 52 -------------------GTLSESEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKKVT-----LADLG--EISYDYLVV 105 (405)
T ss_pred -------------------CCCChhheeccHHHHhcccCceEEEEEEEEEEcccCCEEE-----eCCCc--cccccEEEE
Confidence 0111222233344555545569999999999998887543 33433 367999999
Q ss_pred ecCCcccc
Q 010623 218 CDGCFSNL 225 (506)
Q Consensus 218 AdG~~S~v 225 (506)
|.|.....
T Consensus 106 alGs~~~~ 113 (405)
T COG1252 106 ALGSETNY 113 (405)
T ss_pred ecCCcCCc
Confidence 99987643
No 261
>PRK06370 mercuric reductase; Validated
Probab=97.91 E-value=0.00035 Score=72.66 Aligned_cols=103 Identities=18% Similarity=0.254 Sum_probs=71.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 139 (506)
.-+|+|||||+.|+-+|..|++.|.+|+++|+.+..... .
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~------------------~---------------------- 210 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR------------------E---------------------- 210 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc------------------c----------------------
Confidence 358999999999999999999999999999987532100 0
Q ss_pred eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623 140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC 218 (506)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A 218 (506)
..++.+.+.+.+++. +++++.+ +++++..+++.+ .+.+...++. .++.+|.||.|
T Consensus 211 ---------------------~~~~~~~l~~~l~~~-GV~i~~~~~V~~i~~~~~~~-~v~~~~~~~~-~~i~~D~Vi~A 266 (463)
T PRK06370 211 ---------------------DEDVAAAVREILERE-GIDVRLNAECIRVERDGDGI-AVGLDCNGGA-PEITGSHILVA 266 (463)
T ss_pred ---------------------CHHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCEE-EEEEEeCCCc-eEEEeCEEEEC
Confidence 001223444555555 7888877 599988765543 2444433332 35789999999
Q ss_pred cCCcccch
Q 010623 219 DGCFSNLR 226 (506)
Q Consensus 219 dG~~S~vR 226 (506)
.|......
T Consensus 267 ~G~~pn~~ 274 (463)
T PRK06370 267 VGRVPNTD 274 (463)
T ss_pred cCCCcCCC
Confidence 99776543
No 262
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.89 E-value=0.00021 Score=74.29 Aligned_cols=103 Identities=20% Similarity=0.260 Sum_probs=72.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 139 (506)
.-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.... +..
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~------------------~~d--------------------- 214 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP------------------GTD--------------------- 214 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC------------------CCC---------------------
Confidence 46799999999999999999999999999998753110 000
Q ss_pred eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEe
Q 010623 140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIV 217 (506)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~ 217 (506)
.++...+.+.+++. ++.++.+ +++++..+++++. +.+.+ .+|+..++.+|.||.
T Consensus 215 ----------------------~~~~~~l~~~l~~~-gV~i~~~~~V~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~ 270 (466)
T PRK06115 215 ----------------------TETAKTLQKALTKQ-GMKFKLGSKVTGATAGADGVS-LTLEPAAGGAAETLQADYVLV 270 (466)
T ss_pred ----------------------HHHHHHHHHHHHhc-CCEEEECcEEEEEEEcCCeEE-EEEEEcCCCceeEEEeCEEEE
Confidence 01233455555555 7888887 4899876655432 44443 234445688999999
Q ss_pred ecCCcccc
Q 010623 218 CDGCFSNL 225 (506)
Q Consensus 218 AdG~~S~v 225 (506)
|.|....+
T Consensus 271 a~G~~pn~ 278 (466)
T PRK06115 271 AIGRRPYT 278 (466)
T ss_pred ccCCcccc
Confidence 99987654
No 263
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.88 E-value=6.9e-05 Score=73.94 Aligned_cols=56 Identities=25% Similarity=0.325 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcc
Q 010623 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS 223 (506)
Q Consensus 163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S 223 (506)
.+.+.+++.+.+. |+++++.+ |++++..++.+.+|. ..+|. ++.+|+||.|-|..+
T Consensus 174 ~vvkni~~~l~~~-G~ei~f~t~VeDi~~~~~~~~~v~--~~~g~--~i~~~~vvlA~Grsg 230 (486)
T COG2509 174 KVVKNIREYLESL-GGEIRFNTEVEDIEIEDNEVLGVK--LTKGE--EIEADYVVLAPGRSG 230 (486)
T ss_pred HHHHHHHHHHHhc-CcEEEeeeEEEEEEecCCceEEEE--ccCCc--EEecCEEEEccCcch
Confidence 5677889999998 57777775 999998887655444 56775 467999999999876
No 264
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.87 E-value=1.3e-05 Score=79.07 Aligned_cols=40 Identities=35% Similarity=0.482 Sum_probs=35.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD 97 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~ 97 (506)
+..-+++|||||++|+++|+.|++.|++|.++||+++...
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGG 161 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGG 161 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccc
Confidence 3456899999999999999999999999999999986543
No 265
>PLN02268 probable polyamine oxidase
Probab=97.87 E-value=1.6e-05 Score=82.01 Aligned_cols=37 Identities=32% Similarity=0.451 Sum_probs=33.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD 97 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~ 97 (506)
.+|+|||||++||++|+.|.+.|++|+|+|+++....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GG 37 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG 37 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCc
Confidence 3799999999999999999999999999999876543
No 266
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.85 E-value=3.9e-05 Score=67.59 Aligned_cols=36 Identities=39% Similarity=0.667 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLSE 95 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~~ 95 (506)
+.||+|||+|.+||++|+..+++ .++|.|+|..-.+
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaP 113 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAP 113 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecC
Confidence 47999999999999999999854 5899999997544
No 267
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.84 E-value=0.00027 Score=73.51 Aligned_cols=102 Identities=17% Similarity=0.199 Sum_probs=68.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+...+. ..
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~------------------~d---------------------- 214 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA------------------AD---------------------- 214 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc------------------CC----------------------
Confidence 57999999999999999999999999999988531100 00
Q ss_pred eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (506)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad 219 (506)
..+...+.+.+++. +.++.+ +++++..+++.+. ++..+.+|+..++.+|.||.|.
T Consensus 215 ---------------------~~~~~~~~~~l~~~--v~i~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~i~~D~vi~a~ 270 (471)
T PRK06467 215 ---------------------KDIVKVFTKRIKKQ--FNIMLETKVTAVEAKEDGIY-VTMEGKKAPAEPQRYDAVLVAV 270 (471)
T ss_pred ---------------------HHHHHHHHHHHhhc--eEEEcCCEEEEEEEcCCEEE-EEEEeCCCcceEEEeCEEEEee
Confidence 01223344444443 566666 4888876655432 4443333434568899999999
Q ss_pred CCcccch
Q 010623 220 GCFSNLR 226 (506)
Q Consensus 220 G~~S~vR 226 (506)
|....+.
T Consensus 271 G~~pn~~ 277 (471)
T PRK06467 271 GRVPNGK 277 (471)
T ss_pred cccccCC
Confidence 9887664
No 268
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.82 E-value=2.4e-05 Score=77.97 Aligned_cols=35 Identities=46% Similarity=0.625 Sum_probs=32.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE 95 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~ 95 (506)
+||+|||||++|+++|..|++.|.+|+|+|+++..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~i 36 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHI 36 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 69999999999999999999999999999997543
No 269
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.82 E-value=0.001 Score=65.93 Aligned_cols=64 Identities=13% Similarity=0.212 Sum_probs=49.7
Q ss_pred cccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccc
Q 010623 156 GRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNL 225 (506)
Q Consensus 156 ~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~v 225 (506)
+..++...+...|.+.+.+. |+.++.+ +|+++..+++++.+|. +.+| +++||.||.|+|+++.-
T Consensus 131 ~g~v~p~~l~~~l~~~~~~~-g~~~~~~~~v~~i~~~~~~~~~v~--~~~g---~~~a~~vV~a~G~~~~~ 195 (337)
T TIGR02352 131 DAHVDPRALLKALEKALEKL-GVEIIEHTEVQHIEIRGEKVTAIV--TPSG---DVQADQVVLAAGAWAGE 195 (337)
T ss_pred CceEChHHHHHHHHHHHHHc-CCEEEccceEEEEEeeCCEEEEEE--cCCC---EEECCEEEEcCChhhhh
Confidence 34567788999999999988 6777776 5999998777655443 4555 36799999999999853
No 270
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.80 E-value=0.0005 Score=70.99 Aligned_cols=98 Identities=16% Similarity=0.141 Sum_probs=68.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 139 (506)
.-+|+|||||++|+.+|..|++.|.+|+|+|+.+...+. .
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------~---------------------- 196 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR------------------E---------------------- 196 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC------------------C----------------------
Confidence 357999999999999999999999999999998532100 0
Q ss_pred eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623 140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC 218 (506)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A 218 (506)
...+...+.+.+++. +++++.+ +++++..+++. +.+.. +|+ ++.+|.||.|
T Consensus 197 ---------------------~~~~~~~~~~~l~~~-GI~i~~~~~V~~i~~~~~~---v~v~~-~g~--~i~~D~viva 248 (438)
T PRK07251 197 ---------------------EPSVAALAKQYMEED-GITFLLNAHTTEVKNDGDQ---VLVVT-EDE--TYRFDALLYA 248 (438)
T ss_pred ---------------------CHHHHHHHHHHHHHc-CCEEEcCCEEEEEEecCCE---EEEEE-CCe--EEEcCEEEEe
Confidence 001223444555555 7888877 48888765553 33333 344 4679999999
Q ss_pred cCCcccc
Q 010623 219 DGCFSNL 225 (506)
Q Consensus 219 dG~~S~v 225 (506)
.|.....
T Consensus 249 ~G~~p~~ 255 (438)
T PRK07251 249 TGRKPNT 255 (438)
T ss_pred eCCCCCc
Confidence 9987654
No 271
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.79 E-value=2.6e-05 Score=86.40 Aligned_cols=35 Identities=37% Similarity=0.511 Sum_probs=33.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~ 94 (506)
..+|+||||||||+++|+.|++.|++|+|+|+.+.
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~ 571 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEK 571 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 47999999999999999999999999999999864
No 272
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.78 E-value=0.00016 Score=68.75 Aligned_cols=60 Identities=22% Similarity=0.303 Sum_probs=44.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc---------c-----------cccccchHHHHHHhCch
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV---------G-----------ELLQPGGYLKLIELGLE 118 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~---------g-----------~~l~~~~~~~l~~~g~~ 118 (506)
...+|.|||+|++||++|+.|+++ ++|+|+|.+.....+.. | +.-.|+-.++++.+|+.
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~ 85 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVD 85 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCC
Confidence 357999999999999999999988 79999999875443211 1 01234556788888877
Q ss_pred h
Q 010623 119 D 119 (506)
Q Consensus 119 ~ 119 (506)
.
T Consensus 86 t 86 (447)
T COG2907 86 T 86 (447)
T ss_pred C
Confidence 3
No 273
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.78 E-value=0.00037 Score=73.48 Aligned_cols=74 Identities=24% Similarity=0.247 Sum_probs=58.2
Q ss_pred ccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCccc-chhhccC
Q 010623 157 RGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSN-LRRSLCN 231 (506)
Q Consensus 157 ~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~-vR~~l~~ 231 (506)
..++...+...+.+.+.++ |+++.+. +|+++..+++++.+|++.+ .+|+..+++|+.||+|+|.||. +.+.++.
T Consensus 123 g~vdp~~l~~al~~~A~~~-Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~ 199 (516)
T TIGR03377 123 GTVDPFRLVAANVLDAQEH-GARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGL 199 (516)
T ss_pred cEECHHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCC
Confidence 3567788889999999888 5666666 6999998888888888764 4566667899999999999984 5555554
No 274
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.77 E-value=0.0022 Score=64.86 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=47.0
Q ss_pred ccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCccc
Q 010623 157 RGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN 224 (506)
Q Consensus 157 ~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~ 224 (506)
..++...+...|.+.+.+ +++++.+ .|++++.++++ +.+.+.+|+. ++||.||.|+|.++.
T Consensus 130 g~idp~~~~~~l~~~~~~--G~~i~~~~~V~~i~~~~~~---~~v~t~~g~~--~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 130 GWLSPPQLCRALLAHAGI--RLTLHFNTEITSLERDGEG---WQLLDANGEV--IAASVVVLANGAQAG 191 (381)
T ss_pred cccChHHHHHHHHhccCC--CcEEEeCCEEEEEEEcCCe---EEEEeCCCCE--EEcCEEEEcCCcccc
Confidence 456778899999988877 5777776 59999877664 4455677753 569999999999984
No 275
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.76 E-value=0.00029 Score=74.22 Aligned_cols=96 Identities=29% Similarity=0.345 Sum_probs=71.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
-+|+|||||.+|+-+|..|+..|.+|+|+++.+.... .
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~--------------------~---------------------- 389 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA--------------------D---------------------- 389 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc--------------------c----------------------
Confidence 4899999999999999999999999999998742100 0
Q ss_pred eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEee
Q 010623 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVC 218 (506)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~A 218 (506)
..+.+.+.+..++.++.++ ++++..+++++.++++.+ .+|++.++.+|.|+.|
T Consensus 390 -------------------------~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~ 444 (517)
T PRK15317 390 -------------------------QVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQ 444 (517)
T ss_pred -------------------------HHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEe
Confidence 0122233333488888885 888887767777777765 3566667899999999
Q ss_pred cCCcc
Q 010623 219 DGCFS 223 (506)
Q Consensus 219 dG~~S 223 (506)
.|...
T Consensus 445 ~G~~p 449 (517)
T PRK15317 445 IGLVP 449 (517)
T ss_pred ECCcc
Confidence 99653
No 276
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=97.75 E-value=0.00068 Score=69.43 Aligned_cols=44 Identities=27% Similarity=0.154 Sum_probs=31.3
Q ss_pred EEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccch
Q 010623 178 VRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLR 226 (506)
Q Consensus 178 v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR 226 (506)
..++.++ |+++..++++ |++...+|+ +++||.||.|.......+
T Consensus 224 ~~i~l~~~V~~I~~~~~~---v~v~~~~g~--~~~ad~VI~a~p~~~l~~ 268 (450)
T PF01593_consen 224 GEIRLNTPVTRIEREDGG---VTVTTEDGE--TIEADAVISAVPPSVLKN 268 (450)
T ss_dssp GGEESSEEEEEEEEESSE---EEEEETTSS--EEEESEEEE-S-HHHHHT
T ss_pred ceeecCCcceeccccccc---cccccccce--EEecceeeecCchhhhhh
Confidence 3677775 9999999874 556678887 466999998887655443
No 277
>PRK12831 putative oxidoreductase; Provisional
Probab=97.75 E-value=4.1e-05 Score=79.27 Aligned_cols=36 Identities=36% Similarity=0.407 Sum_probs=33.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~ 94 (506)
...||+||||||+||++|..|+++|++|+|+|+.+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~ 174 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHE 174 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 457999999999999999999999999999998753
No 278
>PRK06116 glutathione reductase; Validated
Probab=97.75 E-value=0.00034 Score=72.47 Aligned_cols=101 Identities=21% Similarity=0.212 Sum_probs=71.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 139 (506)
.-+|+|||||++|+-+|..|++.|.+|+++++.+..... ..
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~--------------------- 207 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG------------------FD--------------------- 207 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc------------------cC---------------------
Confidence 358999999999999999999999999999987531000 00
Q ss_pred eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623 140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC 218 (506)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A 218 (506)
.++...+.+.+++. +++++.+ +|.++..++++. +.+...+|+ ++.+|.||.|
T Consensus 208 ----------------------~~~~~~l~~~L~~~-GV~i~~~~~V~~i~~~~~g~--~~v~~~~g~--~i~~D~Vv~a 260 (450)
T PRK06116 208 ----------------------PDIRETLVEEMEKK-GIRLHTNAVPKAVEKNADGS--LTLTLEDGE--TLTVDCLIWA 260 (450)
T ss_pred ----------------------HHHHHHHHHHHHHC-CcEEECCCEEEEEEEcCCce--EEEEEcCCc--EEEeCEEEEe
Confidence 01223444555555 7888877 499998665431 344456675 4679999999
Q ss_pred cCCcccch
Q 010623 219 DGCFSNLR 226 (506)
Q Consensus 219 dG~~S~vR 226 (506)
.|....+.
T Consensus 261 ~G~~p~~~ 268 (450)
T PRK06116 261 IGREPNTD 268 (450)
T ss_pred eCCCcCCC
Confidence 99876543
No 279
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.73 E-value=0.0004 Score=73.08 Aligned_cols=96 Identities=29% Similarity=0.367 Sum_probs=69.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+... .
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~---------~---------------------------------- 389 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK---------A---------------------------------- 389 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC---------h----------------------------------
Confidence 489999999999999999999999999999764210 0
Q ss_pred eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeC-CccEEEEEcCeEEee
Q 010623 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTK-AGEELTAYAPLTIVC 218 (506)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~-~G~~~~i~a~~vV~A 218 (506)
...+.+.+.+..++.++.++ ++++..+++++.+|++.+. +|+..++.+|.||.|
T Consensus 390 ------------------------~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a 445 (515)
T TIGR03140 390 ------------------------DKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQ 445 (515)
T ss_pred ------------------------hHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEE
Confidence 00122233333378888875 8888777677766776543 455567889999999
Q ss_pred cCCcc
Q 010623 219 DGCFS 223 (506)
Q Consensus 219 dG~~S 223 (506)
.|...
T Consensus 446 ~G~~P 450 (515)
T TIGR03140 446 IGLVP 450 (515)
T ss_pred eCCcC
Confidence 99643
No 280
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.71 E-value=5e-05 Score=78.27 Aligned_cols=37 Identities=46% Similarity=0.537 Sum_probs=33.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCC
Q 010623 60 DADVIVVGAGVAGAALANTLAK--DGRRVHVIERDLSEP 96 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~--~G~~v~vvE~~~~~~ 96 (506)
..+|+||||||||+++|..|++ .|++|+|+|+.+.+.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 4689999999999999999987 799999999997554
No 281
>PRK10262 thioredoxin reductase; Provisional
Probab=97.71 E-value=0.00053 Score=67.62 Aligned_cols=99 Identities=21% Similarity=0.241 Sum_probs=69.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
-+|+|||+|..|+-+|..|++.|.+|+++++.+... . .
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~---------~-----------~---------------------- 184 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---------A-----------E---------------------- 184 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC---------C-----------C----------------------
Confidence 589999999999999999999999999999874210 0 0
Q ss_pred eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeC--CccEEEEEcCeEEe
Q 010623 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTK--AGEELTAYAPLTIV 217 (506)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~--~G~~~~i~a~~vV~ 217 (506)
..+.+.+.+.+++. ++++..+ +++++..+++++.++++.+. +++..++.+|.||.
T Consensus 185 ---------------------~~~~~~~~~~l~~~-gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~ 242 (321)
T PRK10262 185 ---------------------KILIKRLMDKVENG-NIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFV 242 (321)
T ss_pred ---------------------HHHHHHHHhhccCC-CeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEE
Confidence 00122334444444 7888877 48888766655666776543 23445688999999
Q ss_pred ecCCcc
Q 010623 218 CDGCFS 223 (506)
Q Consensus 218 AdG~~S 223 (506)
|.|...
T Consensus 243 a~G~~p 248 (321)
T PRK10262 243 AIGHSP 248 (321)
T ss_pred EeCCcc
Confidence 999643
No 282
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.71 E-value=0.00097 Score=68.94 Aligned_cols=98 Identities=17% Similarity=0.269 Sum_probs=69.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
-+|+|||||++|+-+|..|++.|.+|+++|+.+.... ++.
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~------------------~~d---------------------- 206 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR------------------GFD---------------------- 206 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc------------------ccC----------------------
Confidence 4699999999999999999999999999998743100 000
Q ss_pred eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (506)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad 219 (506)
.++...+.+.+.+. ++.++.+ ++.++..++++ +.+...+|+ ++.+|.||.|.
T Consensus 207 ---------------------~~~~~~l~~~l~~~-gV~i~~~~~v~~i~~~~~~---~~v~~~~g~--~i~~D~viva~ 259 (446)
T TIGR01424 207 ---------------------DDMRALLARNMEGR-GIRIHPQTSLTSITKTDDG---LKVTLSHGE--EIVADVVLFAT 259 (446)
T ss_pred ---------------------HHHHHHHHHHHHHC-CCEEEeCCEEEEEEEcCCe---EEEEEcCCc--EeecCEEEEee
Confidence 01233444555555 7888877 58898766553 334445665 46799999999
Q ss_pred CCcccc
Q 010623 220 GCFSNL 225 (506)
Q Consensus 220 G~~S~v 225 (506)
|.....
T Consensus 260 G~~pn~ 265 (446)
T TIGR01424 260 GRSPNT 265 (446)
T ss_pred CCCcCC
Confidence 987654
No 283
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.70 E-value=0.00024 Score=73.44 Aligned_cols=32 Identities=19% Similarity=0.442 Sum_probs=27.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
+|||+||||||+|..+|. ++.|.+|+|+|++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RFADKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HHCCCeEEEEeCCC
Confidence 599999999999998864 45799999999863
No 284
>PLN02568 polyamine oxidase
Probab=97.70 E-value=4.9e-05 Score=79.86 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=34.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-----CcEEEEecCCCCCC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDG-----RRVHVIERDLSEPD 97 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G-----~~v~vvE~~~~~~~ 97 (506)
+..||+|||||++||++|..|++.| ++|+|+|++.....
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GG 47 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGG 47 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCC
Confidence 3579999999999999999999988 89999999876543
No 285
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.69 E-value=0.0001 Score=71.94 Aligned_cols=67 Identities=33% Similarity=0.400 Sum_probs=47.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcE--EEEecCCCCCCcccc-----c--------ccc---c---chHHHHHHhCc
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRV--HVIERDLSEPDRIVG-----E--------LLQ---P---GGYLKLIELGL 117 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v--~vvE~~~~~~~~~~g-----~--------~l~---~---~~~~~l~~~g~ 117 (506)
+..+|+|||||++||++|+.|++.+-+| +|+|+.+......+. . .+. + +.+..+.++|+
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl 89 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGL 89 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCc
Confidence 4589999999999999999999998765 559998765432221 1 111 1 23466778999
Q ss_pred hhHHhhcc
Q 010623 118 EDCVEQID 125 (506)
Q Consensus 118 ~~~~~~~~ 125 (506)
.+++..++
T Consensus 90 ~~e~~~i~ 97 (491)
T KOG1276|consen 90 EDELQPID 97 (491)
T ss_pred cceeeecC
Confidence 87766554
No 286
>PLN02507 glutathione reductase
Probab=97.69 E-value=0.00055 Score=71.66 Aligned_cols=98 Identities=18% Similarity=0.268 Sum_probs=70.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
-+|+|||||+.|+-+|..|++.|.+|+|+++.+..-. +..
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~------------------~~d---------------------- 243 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR------------------GFD---------------------- 243 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc------------------ccC----------------------
Confidence 4799999999999999999999999999998752100 000
Q ss_pred eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (506)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad 219 (506)
.++...+.+.+++. +++++.+ +|.++..++++ +.+...+|+ ++.+|.|+.|.
T Consensus 244 ---------------------~~~~~~l~~~l~~~-GI~i~~~~~V~~i~~~~~~---~~v~~~~g~--~i~~D~vl~a~ 296 (499)
T PLN02507 244 ---------------------DEMRAVVARNLEGR-GINLHPRTNLTQLTKTEGG---IKVITDHGE--EFVADVVLFAT 296 (499)
T ss_pred ---------------------HHHHHHHHHHHHhC-CCEEEeCCEEEEEEEeCCe---EEEEECCCc--EEEcCEEEEee
Confidence 01233444555555 7888888 48998866553 344456675 36799999999
Q ss_pred CCcccc
Q 010623 220 GCFSNL 225 (506)
Q Consensus 220 G~~S~v 225 (506)
|.....
T Consensus 297 G~~pn~ 302 (499)
T PLN02507 297 GRAPNT 302 (499)
T ss_pred cCCCCC
Confidence 987765
No 287
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.68 E-value=0.00056 Score=71.10 Aligned_cols=99 Identities=20% Similarity=0.229 Sum_probs=70.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
-+|+|||||..|+-+|..|++.|.+|+++|+.+......
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~----------------------------------------- 216 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGE----------------------------------------- 216 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCC-----------------------------------------
Confidence 479999999999999999999999999999875311100
Q ss_pred eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (506)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad 219 (506)
...+...+.+.+++. ++.++.+ +++++..++++ +.+...+|+ ++.+|.||.|.
T Consensus 217 --------------------d~~~~~~l~~~L~~~-gV~i~~~~~v~~v~~~~~~---~~v~~~~g~--~l~~D~vl~a~ 270 (466)
T PRK07845 217 --------------------DADAAEVLEEVFARR-GMTVLKRSRAESVERTGDG---VVVTLTDGR--TVEGSHALMAV 270 (466)
T ss_pred --------------------CHHHHHHHHHHHHHC-CcEEEcCCEEEEEEEeCCE---EEEEECCCc--EEEecEEEEee
Confidence 001223445555555 7888877 48898766654 344455675 46799999999
Q ss_pred CCcccch
Q 010623 220 GCFSNLR 226 (506)
Q Consensus 220 G~~S~vR 226 (506)
|......
T Consensus 271 G~~pn~~ 277 (466)
T PRK07845 271 GSVPNTA 277 (466)
T ss_pred cCCcCCC
Confidence 9877653
No 288
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00032 Score=66.37 Aligned_cols=144 Identities=19% Similarity=0.263 Sum_probs=76.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCCcccccc---cccch--HHHHHHhCch-hHHhhcccceecc
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD-LSEPDRIVGEL---LQPGG--YLKLIELGLE-DCVEQIDAQRVFG 131 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~-~~~~~~~~g~~---l~~~~--~~~l~~~g~~-~~~~~~~~~~~~~ 131 (506)
.+||.+|||||.+||+||-.++..|.+|.++|-- |.+.....|.+ .+-+- -+.+.+.-+. +.+... ...+
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da---~kyG 94 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDA---RKYG 94 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHH---HhhC
Confidence 3699999999999999999999999999999974 33333333321 11111 1222222211 222211 1111
Q ss_pred eEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCC---CEEEEeceEEEEEee---CCeEEEEEEEeCCc
Q 010623 132 YALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLP---NVRLEQGTVTSLLEE---KGTIKGVQYKTKAG 205 (506)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~---~v~i~~~~v~~~~~~---~~~v~~v~v~~~~G 205 (506)
+..-. +... -+...|.+...+++.+.+ .+.++..+|+-+..- -+.. .+..+..+|
T Consensus 95 W~~~e--~~ik----------------hdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h-~I~at~~~g 155 (503)
T KOG4716|consen 95 WNVDE--QKIK----------------HDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPH-KIKATNKKG 155 (503)
T ss_pred CCCcc--cccc----------------ccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccc-eEEEecCCC
Confidence 11100 0000 012345566666666542 133333334333211 1111 255566778
Q ss_pred cEEEEEcCeEEeecCCccc
Q 010623 206 EELTAYAPLTIVCDGCFSN 224 (506)
Q Consensus 206 ~~~~i~a~~vV~AdG~~S~ 224 (506)
++..+.|+.+|.|+|.+-+
T Consensus 156 k~~~~ta~~fvIatG~RPr 174 (503)
T KOG4716|consen 156 KERFLTAENFVIATGLRPR 174 (503)
T ss_pred ceEEeecceEEEEecCCCC
Confidence 7777889999999998653
No 289
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.67 E-value=0.00059 Score=70.56 Aligned_cols=101 Identities=16% Similarity=0.161 Sum_probs=70.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
-+|+|||||..|+-+|..|++.|.+|+|+|+.+..... +.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~------------------~d---------------------- 206 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS------------------FD---------------------- 206 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc------------------cC----------------------
Confidence 58999999999999999999999999999987531100 00
Q ss_pred eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (506)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad 219 (506)
..+.+.+.+.+++. ++.++.+ +++++..++++. +.+...+|+ .++.+|.||.|.
T Consensus 207 ---------------------~~~~~~~~~~l~~~-gI~i~~~~~v~~i~~~~~~~--~~v~~~~g~-~~i~~D~vi~a~ 261 (450)
T TIGR01421 207 ---------------------SMISETITEEYEKE-GINVHKLSKPVKVEKTVEGK--LVIHFEDGK-SIDDVDELIWAI 261 (450)
T ss_pred ---------------------HHHHHHHHHHHHHc-CCEEEcCCEEEEEEEeCCce--EEEEECCCc-EEEEcCEEEEee
Confidence 01333445555555 7888887 488887654432 333445563 357899999999
Q ss_pred CCcccch
Q 010623 220 GCFSNLR 226 (506)
Q Consensus 220 G~~S~vR 226 (506)
|......
T Consensus 262 G~~pn~~ 268 (450)
T TIGR01421 262 GRKPNTK 268 (450)
T ss_pred CCCcCcc
Confidence 9876653
No 290
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.67 E-value=0.00061 Score=70.36 Aligned_cols=97 Identities=14% Similarity=0.201 Sum_probs=69.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+...+. .
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~----------------------- 197 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR------------------E----------------------- 197 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC------------------c-----------------------
Confidence 48999999999999999999999999999987421100 0
Q ss_pred eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (506)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad 219 (506)
...+...+.+.+++. +++++.+ +++++..+++. +.+.+++|+ +.+|.||.|.
T Consensus 198 --------------------~~~~~~~l~~~l~~~-gV~v~~~~~v~~i~~~~~~---v~v~~~~g~---i~~D~vl~a~ 250 (441)
T PRK08010 198 --------------------DRDIADNIATILRDQ-GVDIILNAHVERISHHENQ---VQVHSEHAQ---LAVDALLIAS 250 (441)
T ss_pred --------------------CHHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCE---EEEEEcCCe---EEeCEEEEee
Confidence 001233455556665 7888877 48998876553 444454553 5699999999
Q ss_pred CCcccc
Q 010623 220 GCFSNL 225 (506)
Q Consensus 220 G~~S~v 225 (506)
|.....
T Consensus 251 G~~pn~ 256 (441)
T PRK08010 251 GRQPAT 256 (441)
T ss_pred cCCcCC
Confidence 988765
No 291
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.66 E-value=0.00027 Score=71.45 Aligned_cols=34 Identities=21% Similarity=0.458 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLS 94 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~ 94 (506)
.+|+|||||+||+.+|..|.+. ..+|+|+++++.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence 5899999999999999999885 468999999863
No 292
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.66 E-value=0.0006 Score=70.85 Aligned_cols=102 Identities=24% Similarity=0.276 Sum_probs=69.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 139 (506)
.-+|+|||||+.|+-+|..|++.|.+|+++|+.+...+ . ..
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~---------~---------~d--------------------- 209 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP---------L---------ED--------------------- 209 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc---------c---------hh---------------------
Confidence 35799999999999999999999999999998753110 0 00
Q ss_pred eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623 140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC 218 (506)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A 218 (506)
.++...+.+.+++. +.++.+ +++++..+++ ..+++...+|+..++.+|.||.|
T Consensus 210 ----------------------~~~~~~~~~~l~~~--I~i~~~~~v~~i~~~~~--~~v~~~~~~~~~~~i~~D~vi~a 263 (460)
T PRK06292 210 ----------------------PEVSKQAQKILSKE--FKIKLGAKVTSVEKSGD--EKVEELEKGGKTETIEADYVLVA 263 (460)
T ss_pred ----------------------HHHHHHHHHHHhhc--cEEEcCCEEEEEEEcCC--ceEEEEEcCCceEEEEeCEEEEc
Confidence 01223344444443 677766 5888876544 13444344555456889999999
Q ss_pred cCCcccch
Q 010623 219 DGCFSNLR 226 (506)
Q Consensus 219 dG~~S~vR 226 (506)
.|....+.
T Consensus 264 ~G~~p~~~ 271 (460)
T PRK06292 264 TGRRPNTD 271 (460)
T ss_pred cCCccCCC
Confidence 99876554
No 293
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.65 E-value=7.3e-05 Score=70.38 Aligned_cols=36 Identities=36% Similarity=0.586 Sum_probs=33.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP 96 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~ 96 (506)
+|.+|||+|.+|+.+|..|+++|.+|.|+||++...
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIG 37 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIG 37 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCC
Confidence 799999999999999999999999999999997544
No 294
>PRK07846 mycothione reductase; Reviewed
Probab=97.65 E-value=0.00076 Score=69.73 Aligned_cols=98 Identities=26% Similarity=0.354 Sum_probs=67.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 139 (506)
.-+|+|||||+.|+-+|..|++.|.+|+++|+.+... + ....
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll---------~---------~~d~-------------------- 207 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL---------R---------HLDD-------------------- 207 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc---------c---------ccCH--------------------
Confidence 3589999999999999999999999999999875311 0 0000
Q ss_pred eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623 140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC 218 (506)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A 218 (506)
++.+.+.+.. +. ++.++.+ +++++..++++ +.+...+|+ ++.+|.||.|
T Consensus 208 -----------------------~~~~~l~~l~-~~-~v~i~~~~~v~~i~~~~~~---v~v~~~~g~--~i~~D~vl~a 257 (451)
T PRK07846 208 -----------------------DISERFTELA-SK-RWDVRLGRNVVGVSQDGSG---VTLRLDDGS--TVEADVLLVA 257 (451)
T ss_pred -----------------------HHHHHHHHHH-hc-CeEEEeCCEEEEEEEcCCE---EEEEECCCc--EeecCEEEEE
Confidence 1112222222 33 5888777 48888766553 444455665 4679999999
Q ss_pred cCCcccc
Q 010623 219 DGCFSNL 225 (506)
Q Consensus 219 dG~~S~v 225 (506)
.|.....
T Consensus 258 ~G~~pn~ 264 (451)
T PRK07846 258 TGRVPNG 264 (451)
T ss_pred ECCccCc
Confidence 9987754
No 295
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.65 E-value=0.00084 Score=65.28 Aligned_cols=96 Identities=23% Similarity=0.300 Sum_probs=67.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 139 (506)
.-+|+|||+|++|+-+|..|++.|.+|+++++.+... ..
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~--------------------~~--------------------- 179 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR--------------------AE--------------------- 179 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC--------------------cC---------------------
Confidence 3589999999999999999999999999999864210 00
Q ss_pred eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEe
Q 010623 140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIV 217 (506)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~ 217 (506)
..+.+.+.+..++.++.+ +++++..++ ++..+++.+ .+|+..++.+|.||.
T Consensus 180 --------------------------~~~~~~l~~~~gv~~~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vi~ 232 (300)
T TIGR01292 180 --------------------------KILLDRLRKNPNIEFLWNSTVKEIVGDN-KVEGVKIKNTVTGEEEELKVDGVFI 232 (300)
T ss_pred --------------------------HHHHHHHHhCCCeEEEeccEEEEEEccC-cEEEEEEEecCCCceEEEEccEEEE
Confidence 011223333347888877 488887654 455566544 356656788999999
Q ss_pred ecCCcc
Q 010623 218 CDGCFS 223 (506)
Q Consensus 218 AdG~~S 223 (506)
|+|...
T Consensus 233 a~G~~~ 238 (300)
T TIGR01292 233 AIGHEP 238 (300)
T ss_pred eeCCCC
Confidence 999543
No 296
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.00021 Score=67.35 Aligned_cols=115 Identities=21% Similarity=0.221 Sum_probs=71.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC---c--ccccccccchH---HHHHHhCch-hHHhhcccceec
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD---R--IVGELLQPGGY---LKLIELGLE-DCVEQIDAQRVF 130 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~---~--~~g~~l~~~~~---~~l~~~g~~-~~~~~~~~~~~~ 130 (506)
...|-|||||.||.-+|+.++++|++|.|+|-++.... + ..++.+..++. ..-...|+. ++++..+...+.
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~navGlLk~EMR~lgSlii~ 82 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAVGLLKAEMRLLGSLIIE 82 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCcccccchhhheeccccccchhhhhhHHHHHHHHHhhhHHhh
Confidence 46789999999999999999999999999998864221 1 11122222221 112223333 222221111000
Q ss_pred ceEEEECCceeeeecCCcCCCCCc--ccccccchHHHHHHHHHHHcCCCEEEEeceEEEEEe
Q 010623 131 GYALFKDGNRTQISYPLEKFHSDV--AGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLE 190 (506)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~v~~~~~ 190 (506)
..+...-| ....++|..|-+.+.+.+++++.++++.++|+++-.
T Consensus 83 ----------------~Ad~~~VPAGgALAVDR~~Fs~~vT~~l~~hpli~vireEvt~iP~ 128 (439)
T COG1206 83 ----------------AADKHRVPAGGALAVDRDGFSQAVTEKLENHPLIEVIREEVTEIPP 128 (439)
T ss_pred ----------------hhhhccCCCCceeeecHhHHHHHHHHHHhcCCCEEEEccccccCCC
Confidence 00001112 224689999999999999999999999888888754
No 297
>PLN02676 polyamine oxidase
Probab=97.60 E-value=8.4e-05 Score=77.39 Aligned_cols=37 Identities=32% Similarity=0.509 Sum_probs=33.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDLSEP 96 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~~~~ 96 (506)
.+||+|||||++||++|+.|+++|. +|+|+|++....
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~G 63 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIG 63 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCC
Confidence 4799999999999999999999998 699999987543
No 298
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.60 E-value=0.00038 Score=77.00 Aligned_cols=35 Identities=14% Similarity=0.303 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKD----GRRVHVIERDLSE 95 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~----G~~v~vvE~~~~~ 95 (506)
.+|+|||||++|+.+|..|.++ +++|+|+++.+..
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~ 42 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI 42 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence 4899999999999999999764 5799999998754
No 299
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.59 E-value=7.2e-05 Score=81.66 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=32.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
...+|+||||||||+++|+.|++.|++|+|+|+.+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 45799999999999999999999999999999853
No 300
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.58 E-value=8.6e-05 Score=82.02 Aligned_cols=35 Identities=46% Similarity=0.593 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~ 94 (506)
..+|+||||||||+++|..|++.|++|+|+|+.+.
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~ 573 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREEN 573 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence 46999999999999999999999999999999864
No 301
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.58 E-value=9.5e-05 Score=76.38 Aligned_cols=36 Identities=44% Similarity=0.502 Sum_probs=33.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~ 94 (506)
...+|+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~ 167 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHK 167 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 457999999999999999999999999999999753
No 302
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.57 E-value=0.00033 Score=77.36 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=28.7
Q ss_pred EEEECCCHHHHHHHHHHHHC---CCcEEEEecCCCC
Q 010623 63 VIVVGAGVAGAALANTLAKD---GRRVHVIERDLSE 95 (506)
Q Consensus 63 VvIVGgG~aGl~~A~~La~~---G~~v~vvE~~~~~ 95 (506)
|+|||||++|+.+|..|.+. +++|+|+|+.+..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~ 36 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP 36 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence 68999999999999998775 4799999998753
No 303
>PRK14694 putative mercuric reductase; Provisional
Probab=97.57 E-value=0.00092 Score=69.60 Aligned_cols=97 Identities=22% Similarity=0.252 Sum_probs=67.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
-+|+|||||++|+-+|..|++.|.+|+++++... +. . .
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~---------l~-~---------~----------------------- 216 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRV---------LS-Q---------E----------------------- 216 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCC---------CC-C---------C-----------------------
Confidence 5799999999999999999999999999986421 00 0 0
Q ss_pred eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (506)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad 219 (506)
...+...+.+.+++. +++++.+ ++.++..+++. +.+.+.++ ++.+|.||.|.
T Consensus 217 --------------------~~~~~~~l~~~l~~~-GI~v~~~~~v~~i~~~~~~---~~v~~~~~---~i~~D~vi~a~ 269 (468)
T PRK14694 217 --------------------DPAVGEAIEAAFRRE-GIEVLKQTQASEVDYNGRE---FILETNAG---TLRAEQLLVAT 269 (468)
T ss_pred --------------------CHHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCE---EEEEECCC---EEEeCEEEEcc
Confidence 001233445555555 7888887 58888766553 33444444 37799999999
Q ss_pred CCcccch
Q 010623 220 GCFSNLR 226 (506)
Q Consensus 220 G~~S~vR 226 (506)
|......
T Consensus 270 G~~pn~~ 276 (468)
T PRK14694 270 GRTPNTE 276 (468)
T ss_pred CCCCCcC
Confidence 9887653
No 304
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.55 E-value=0.0001 Score=79.96 Aligned_cols=38 Identities=39% Similarity=0.461 Sum_probs=34.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP 96 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~ 96 (506)
...+|+|||||++||++|+.|++.|++|+|+|++....
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~G 274 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPG 274 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCC
Confidence 35899999999999999999999999999999987553
No 305
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.54 E-value=0.0001 Score=79.91 Aligned_cols=37 Identities=41% Similarity=0.552 Sum_probs=33.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE 95 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~ 95 (506)
...+|+||||||+||++|..|++.|++|+|+|+.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~ 362 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEI 362 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3579999999999999999999999999999998643
No 306
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.53 E-value=0.00038 Score=69.69 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=29.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC---CcEEEEecCCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDG---RRVHVIERDLS 94 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G---~~v~vvE~~~~ 94 (506)
++|+|||||++|+.+|..|.+.- -.+.|+|+.+.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence 68999999999999999998752 13999999875
No 307
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.53 E-value=0.0008 Score=74.34 Aligned_cols=98 Identities=18% Similarity=0.238 Sum_probs=68.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+....+ .+ .
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~---------------~l--d---------------------- 181 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK---------------QL--D---------------------- 181 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh---------------hc--C----------------------
Confidence 47999999999999999999999999999987421000 00 0
Q ss_pred eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (506)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad 219 (506)
......+.+.+++. ++.++.++ ++++..++ .+.+| ...||+ ++.+|.||.|.
T Consensus 182 ---------------------~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~-~~~~v--~~~dG~--~i~~D~Vi~a~ 234 (785)
T TIGR02374 182 ---------------------QTAGRLLQRELEQK-GLTFLLEKDTVEIVGAT-KADRI--RFKDGS--SLEADLIVMAA 234 (785)
T ss_pred ---------------------HHHHHHHHHHHHHc-CCEEEeCCceEEEEcCC-ceEEE--EECCCC--EEEcCEEEECC
Confidence 01223444555555 78888885 88886543 33334 356776 46799999999
Q ss_pred CCccc
Q 010623 220 GCFSN 224 (506)
Q Consensus 220 G~~S~ 224 (506)
|....
T Consensus 235 G~~Pn 239 (785)
T TIGR02374 235 GIRPN 239 (785)
T ss_pred CCCcC
Confidence 98754
No 308
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.52 E-value=0.0008 Score=74.51 Aligned_cols=100 Identities=23% Similarity=0.252 Sum_probs=70.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
-.++|||||+.|+-+|..|++.|.+|+|+|+.+..... . +.
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~---------------~--ld---------------------- 186 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAE---------------Q--LD---------------------- 186 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhh---------------h--cC----------------------
Confidence 46999999999999999999999999999987521000 0 00
Q ss_pred eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeC-CeEEEEEEEeCCccEEEEEcCeEEee
Q 010623 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEK-GTIKGVQYKTKAGEELTAYAPLTIVC 218 (506)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~-~~v~~v~v~~~~G~~~~i~a~~vV~A 218 (506)
......+.+.+++. +++++.++ ++++..++ +.+ ..+...+|++ +.+|+||.|
T Consensus 187 ---------------------~~~~~~l~~~L~~~-GV~v~~~~~v~~I~~~~~~~~--~~v~~~dG~~--i~~D~Vv~A 240 (847)
T PRK14989 187 ---------------------QMGGEQLRRKIESM-GVRVHTSKNTLEIVQEGVEAR--KTMRFADGSE--LEVDFIVFS 240 (847)
T ss_pred ---------------------HHHHHHHHHHHHHC-CCEEEcCCeEEEEEecCCCce--EEEEECCCCE--EEcCEEEEC
Confidence 01223455566666 78888885 88887543 222 3344567874 679999999
Q ss_pred cCCcccc
Q 010623 219 DGCFSNL 225 (506)
Q Consensus 219 dG~~S~v 225 (506)
.|.....
T Consensus 241 ~G~rPn~ 247 (847)
T PRK14989 241 TGIRPQD 247 (847)
T ss_pred CCcccCc
Confidence 9987654
No 309
>PRK14727 putative mercuric reductase; Provisional
Probab=97.52 E-value=0.0011 Score=69.17 Aligned_cols=97 Identities=20% Similarity=0.250 Sum_probs=68.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
-+|+|||||+.|+-+|..|++.|.+|+|+++... +. . ..
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~---------l~-~---------~d---------------------- 227 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTL---------LF-R---------ED---------------------- 227 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC---------CC-c---------ch----------------------
Confidence 4799999999999999999999999999987421 00 0 00
Q ss_pred eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (506)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad 219 (506)
..+...+.+.+++. ++.++.+ +++++..+++. +.+...+++ +.+|.||.|.
T Consensus 228 ---------------------~~~~~~l~~~L~~~-GV~i~~~~~V~~i~~~~~~---~~v~~~~g~---i~aD~VlvA~ 279 (479)
T PRK14727 228 ---------------------PLLGETLTACFEKE-GIEVLNNTQASLVEHDDNG---FVLTTGHGE---LRAEKLLIST 279 (479)
T ss_pred ---------------------HHHHHHHHHHHHhC-CCEEEcCcEEEEEEEeCCE---EEEEEcCCe---EEeCEEEEcc
Confidence 01223444555555 7888877 48888766553 444455553 6799999999
Q ss_pred CCcccch
Q 010623 220 GCFSNLR 226 (506)
Q Consensus 220 G~~S~vR 226 (506)
|....+.
T Consensus 280 G~~pn~~ 286 (479)
T PRK14727 280 GRHANTH 286 (479)
T ss_pred CCCCCcc
Confidence 9988654
No 310
>PLN02529 lysine-specific histone demethylase 1
Probab=97.51 E-value=0.00014 Score=78.44 Aligned_cols=36 Identities=42% Similarity=0.517 Sum_probs=33.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~ 94 (506)
.+.+|+|||||++||++|..|+++|++|+|+|+++.
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~ 194 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNR 194 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 357999999999999999999999999999999864
No 311
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.51 E-value=0.00014 Score=74.05 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHH-HHCCCcEEEEecCCCCC
Q 010623 60 DADVIVVGAGVAGAALANTL-AKDGRRVHVIERDLSEP 96 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~L-a~~G~~v~vvE~~~~~~ 96 (506)
...|+||||||||+.+|..| ++.|++|+|+||.+.+.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 46899999999999999965 57899999999998654
No 312
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.50 E-value=0.00011 Score=82.76 Aligned_cols=36 Identities=36% Similarity=0.326 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE 95 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~ 95 (506)
..+|+|||||||||++|..|++.|++|+|+|+.+..
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~ 465 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVV 465 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 469999999999999999999999999999998644
No 313
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.50 E-value=0.0013 Score=68.53 Aligned_cols=99 Identities=17% Similarity=0.211 Sum_probs=67.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
-+|+|||||+.|+-+|..|++.|.+|+|+++.. .. + ...
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l---------~---------~~d---------------------- 219 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-LL---------R---------GFD---------------------- 219 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEecc-cc---------c---------ccC----------------------
Confidence 479999999999999999999999999998641 10 0 000
Q ss_pred eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCcc-EEEEEcCeEEee
Q 010623 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGE-ELTAYAPLTIVC 218 (506)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~-~~~i~a~~vV~A 218 (506)
.++...+.+.+++. ++.++.+. ++++...++.+. +++ .+|+ ..++.+|.||.|
T Consensus 220 ---------------------~~~~~~l~~~L~~~-gV~i~~~~~v~~v~~~~~~~~-v~~--~~~~~~~~i~~D~vl~a 274 (484)
T TIGR01438 220 ---------------------QDCANKVGEHMEEH-GVKFKRQFVPIKVEQIEAKVK-VTF--TDSTNGIEEEYDTVLLA 274 (484)
T ss_pred ---------------------HHHHHHHHHHHHHc-CCEEEeCceEEEEEEcCCeEE-EEE--ecCCcceEEEeCEEEEE
Confidence 01223444555555 78888875 778876655332 433 3332 235789999999
Q ss_pred cCCcccc
Q 010623 219 DGCFSNL 225 (506)
Q Consensus 219 dG~~S~v 225 (506)
.|....+
T Consensus 275 ~G~~pn~ 281 (484)
T TIGR01438 275 IGRDACT 281 (484)
T ss_pred ecCCcCC
Confidence 9976654
No 314
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.50 E-value=0.0014 Score=69.77 Aligned_cols=63 Identities=14% Similarity=0.212 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHcCCCEEEEece-EEEEEee-CCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623 162 GRFVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL 225 (506)
Q Consensus 162 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~-~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v 225 (506)
..+...|.+.+.+. +++++..+ ++++..+ +++|.||.+.+ .+|+.+.++|+.||.|+|+.+.+
T Consensus 126 ~~i~~~L~~~~~~~-gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 126 HALLHTLYQGNLKN-GTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHhcc-CCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 35788898888876 78888885 9999874 68899998754 68888889999999999999864
No 315
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.50 E-value=0.00013 Score=80.33 Aligned_cols=36 Identities=39% Similarity=0.473 Sum_probs=33.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~ 94 (506)
...+|+|||||||||++|..|++.|++|+|+|+.+.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~ 465 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE 465 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 457999999999999999999999999999999743
No 316
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.49 E-value=0.0011 Score=68.11 Aligned_cols=97 Identities=22% Similarity=0.324 Sum_probs=67.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
-+|+|||||++|+-+|..|++.|.+|+++++.+... .+ .+
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~--------~~-------~~------------------------- 177 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL--------NK-------LF------------------------- 177 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC--------cc-------cc-------------------------
Confidence 489999999999999999999999999999875310 00 00
Q ss_pred eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (506)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad 219 (506)
...+...+.+.+++. +++++.+ ++.++..++. + + ...+|++ +.+|.||.|.
T Consensus 178 --------------------~~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~-~--v--~~~~g~~--i~~D~vi~a~ 229 (427)
T TIGR03385 178 --------------------DEEMNQIVEEELKKH-EINLRLNEEVDSIEGEER-V--K--VFTSGGV--YQADMVILAT 229 (427)
T ss_pred --------------------CHHHHHHHHHHHHHc-CCEEEeCCEEEEEecCCC-E--E--EEcCCCE--EEeCEEEECC
Confidence 011333455555665 7888877 4888865432 2 2 2346653 6799999999
Q ss_pred CCcccc
Q 010623 220 GCFSNL 225 (506)
Q Consensus 220 G~~S~v 225 (506)
|.....
T Consensus 230 G~~p~~ 235 (427)
T TIGR03385 230 GIKPNS 235 (427)
T ss_pred CccCCH
Confidence 987543
No 317
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.49 E-value=0.0011 Score=68.55 Aligned_cols=97 Identities=24% Similarity=0.366 Sum_probs=66.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
-+|+|||||++|+-+|..|++.|.+|+++++.+..... .+
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~---------------~~------------------------- 189 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPD---------------SF------------------------- 189 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCch---------------hc-------------------------
Confidence 57999999999999999999999999999986421000 00
Q ss_pred eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (506)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad 219 (506)
...+.+.+.+.+++. +++++.+ +++++..+ +++..+ ..+++ ++.+|.||.|.
T Consensus 190 --------------------~~~~~~~l~~~l~~~-gI~v~~~~~v~~i~~~-~~~~~v--~~~~~---~i~~d~vi~a~ 242 (444)
T PRK09564 190 --------------------DKEITDVMEEELREN-GVELHLNEFVKSLIGE-DKVEGV--VTDKG---EYEADVVIVAT 242 (444)
T ss_pred --------------------CHHHHHHHHHHHHHC-CCEEEcCCEEEEEecC-CcEEEE--EeCCC---EEEcCEEEECc
Confidence 012334555566666 6888877 48888543 333323 23333 36799999999
Q ss_pred CCccc
Q 010623 220 GCFSN 224 (506)
Q Consensus 220 G~~S~ 224 (506)
|....
T Consensus 243 G~~p~ 247 (444)
T PRK09564 243 GVKPN 247 (444)
T ss_pred CCCcC
Confidence 98654
No 318
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.47 E-value=0.0002 Score=74.29 Aligned_cols=37 Identities=41% Similarity=0.510 Sum_probs=33.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE 95 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~ 95 (506)
...+|+||||||+|+++|..|++.|++|+|+|+.+..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~ 176 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI 176 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 3579999999999999999999999999999998653
No 319
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.46 E-value=0.0015 Score=68.44 Aligned_cols=98 Identities=14% Similarity=0.180 Sum_probs=68.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
-+|+|||||+.|+-+|..|++.|.+|+|+++.. ... .+.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l~-----~~d----------------------------------- 221 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSI-PLR-----GFD----------------------------------- 221 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCc-ccc-----cCC-----------------------------------
Confidence 379999999999999999999999999998641 000 000
Q ss_pred eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (506)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad 219 (506)
..+.+.+.+.+++. ++.++.+. +.++...++. +.+...+|++ +.+|.||.|.
T Consensus 222 ---------------------~~~~~~l~~~l~~~-GV~i~~~~~v~~v~~~~~~---~~v~~~~g~~--i~~D~vl~a~ 274 (499)
T PTZ00052 222 ---------------------RQCSEKVVEYMKEQ-GTLFLEGVVPINIEKMDDK---IKVLFSDGTT--ELFDTVLYAT 274 (499)
T ss_pred ---------------------HHHHHHHHHHHHHc-CCEEEcCCeEEEEEEcCCe---EEEEECCCCE--EEcCEEEEee
Confidence 01223445555555 78888775 7778765543 3344556764 5699999999
Q ss_pred CCcccch
Q 010623 220 GCFSNLR 226 (506)
Q Consensus 220 G~~S~vR 226 (506)
|....+.
T Consensus 275 G~~pn~~ 281 (499)
T PTZ00052 275 GRKPDIK 281 (499)
T ss_pred CCCCCcc
Confidence 9887654
No 320
>PTZ00058 glutathione reductase; Provisional
Probab=97.46 E-value=0.0016 Score=68.71 Aligned_cols=101 Identities=15% Similarity=0.192 Sum_probs=68.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 139 (506)
.-+|+|||||..|+-+|..|++.|.+|+|+|+.+.... .+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~------------------~~d--------------------- 277 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR------------------KFD--------------------- 277 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc------------------cCC---------------------
Confidence 45799999999999999999999999999998742100 000
Q ss_pred eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623 140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC 218 (506)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A 218 (506)
.++.+.+.+.+++. ++.++.+. +.++..++++ ++.+...+++ .++.+|.|+.|
T Consensus 278 ----------------------~~i~~~l~~~L~~~-GV~i~~~~~V~~I~~~~~~--~v~v~~~~~~-~~i~aD~VlvA 331 (561)
T PTZ00058 278 ----------------------ETIINELENDMKKN-NINIITHANVEEIEKVKEK--NLTIYLSDGR-KYEHFDYVIYC 331 (561)
T ss_pred ----------------------HHHHHHHHHHHHHC-CCEEEeCCEEEEEEecCCC--cEEEEECCCC-EEEECCEEEEC
Confidence 01233444555555 78888875 8888765432 2333333333 35789999999
Q ss_pred cCCcccc
Q 010623 219 DGCFSNL 225 (506)
Q Consensus 219 dG~~S~v 225 (506)
.|....+
T Consensus 332 ~Gr~Pn~ 338 (561)
T PTZ00058 332 VGRSPNT 338 (561)
T ss_pred cCCCCCc
Confidence 9976543
No 321
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.45 E-value=0.0019 Score=66.91 Aligned_cols=98 Identities=23% Similarity=0.365 Sum_probs=66.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 139 (506)
.-+|+|||||+.|+-+|..|++.|.+|+++|+.+.... . +.+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~----------------~--~d~-------------------- 210 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR----------------H--LDE-------------------- 210 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc----------------c--cCH--------------------
Confidence 35899999999999999999999999999998742100 0 000
Q ss_pred eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623 140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC 218 (506)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A 218 (506)
++...+.+.. +. ++.++.+ +++++..++++ +.+...+|+ ++.+|.|+.|
T Consensus 211 -----------------------~~~~~l~~~~-~~-gI~i~~~~~V~~i~~~~~~---v~v~~~~g~--~i~~D~vl~a 260 (452)
T TIGR03452 211 -----------------------DISDRFTEIA-KK-KWDIRLGRNVTAVEQDGDG---VTLTLDDGS--TVTADVLLVA 260 (452)
T ss_pred -----------------------HHHHHHHHHH-hc-CCEEEeCCEEEEEEEcCCe---EEEEEcCCC--EEEcCEEEEe
Confidence 1112222222 23 5788776 58888766553 344455665 4779999999
Q ss_pred cCCcccc
Q 010623 219 DGCFSNL 225 (506)
Q Consensus 219 dG~~S~v 225 (506)
.|.....
T Consensus 261 ~G~~pn~ 267 (452)
T TIGR03452 261 TGRVPNG 267 (452)
T ss_pred eccCcCC
Confidence 9977644
No 322
>PRK13748 putative mercuric reductase; Provisional
Probab=97.43 E-value=0.0025 Score=68.11 Aligned_cols=96 Identities=17% Similarity=0.225 Sum_probs=67.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
-+|+|||||+.|+-+|..|++.|.+|+|+++... +. . ..
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~---------l~-~---------~d---------------------- 309 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTL---------FF-R---------ED---------------------- 309 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc---------cc-c---------cC----------------------
Confidence 4799999999999999999999999999997521 00 0 00
Q ss_pred eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (506)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad 219 (506)
.++...+.+.+++. ++.++.+ ++.++..+++. +.+.+.++ ++.+|.||.|.
T Consensus 310 ---------------------~~~~~~l~~~l~~~-gI~i~~~~~v~~i~~~~~~---~~v~~~~~---~i~~D~vi~a~ 361 (561)
T PRK13748 310 ---------------------PAIGEAVTAAFRAE-GIEVLEHTQASQVAHVDGE---FVLTTGHG---ELRADKLLVAT 361 (561)
T ss_pred ---------------------HHHHHHHHHHHHHC-CCEEEcCCEEEEEEecCCE---EEEEecCC---eEEeCEEEEcc
Confidence 01223344455555 7888877 48888766553 33444444 36799999999
Q ss_pred CCcccc
Q 010623 220 GCFSNL 225 (506)
Q Consensus 220 G~~S~v 225 (506)
|.....
T Consensus 362 G~~pn~ 367 (561)
T PRK13748 362 GRAPNT 367 (561)
T ss_pred CCCcCC
Confidence 987665
No 323
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.38 E-value=0.0022 Score=66.75 Aligned_cols=100 Identities=14% Similarity=0.196 Sum_probs=68.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHC---CCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623 61 ADVIVVGAGVAGAALANTLAKD---GRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD 137 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~---G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 137 (506)
-+|+|||||+.|+-+|..++.. |.+|+|+|+.+.... . +
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~----------------~--~-------------------- 229 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR----------------G--F-------------------- 229 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc----------------c--c--------------------
Confidence 5799999999999999776554 999999998753110 0 0
Q ss_pred CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEE
Q 010623 138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI 216 (506)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV 216 (506)
..++.+.+.+.+++. ++.++.++ ++++..++++...+ ...+|+ ++.+|.||
T Consensus 230 -----------------------d~~~~~~l~~~L~~~-GI~i~~~~~v~~i~~~~~~~~~v--~~~~g~--~i~~D~vl 281 (486)
T TIGR01423 230 -----------------------DSTLRKELTKQLRAN-GINIMTNENPAKVTLNADGSKHV--TFESGK--TLDVDVVM 281 (486)
T ss_pred -----------------------CHHHHHHHHHHHHHc-CCEEEcCCEEEEEEEcCCceEEE--EEcCCC--EEEcCEEE
Confidence 012334555556665 78888875 88887654432223 344565 47799999
Q ss_pred eecCCcccch
Q 010623 217 VCDGCFSNLR 226 (506)
Q Consensus 217 ~AdG~~S~vR 226 (506)
.|.|......
T Consensus 282 ~a~G~~Pn~~ 291 (486)
T TIGR01423 282 MAIGRVPRTQ 291 (486)
T ss_pred EeeCCCcCcc
Confidence 9999877654
No 324
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.37 E-value=0.001 Score=65.89 Aligned_cols=139 Identities=24% Similarity=0.266 Sum_probs=73.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEecCCCCCC----cccccccccchHHHHHHhCchhHHhhcccceecc
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKDGR--RVHVIERDLSEPD----RIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFG 131 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~~~~~----~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ 131 (506)
....+|+|||||.++.-.+..|.+.+. +|+++=|++...+ ....+.+.|.-++.+..+.-.....-......
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~-- 265 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRH-- 265 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGG--
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHh--
Confidence 346899999999999999999999875 8999999864322 11224466666666655443321111110000
Q ss_pred eEEEECCceeeeecCCcCCCCCcccccccchH---HHHHHH-HHHHcCCCEEEEece-EEEEEeeCC-eEEEEEEEe-CC
Q 010623 132 YALFKDGNRTQISYPLEKFHSDVAGRGFHNGR---FVQRLR-EKAASLPNVRLEQGT-VTSLLEEKG-TIKGVQYKT-KA 204 (506)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---l~~~L~-~~~~~~~~v~i~~~~-v~~~~~~~~-~v~~v~v~~-~~ 204 (506)
.....|+... +.+.|+ +.+...+.+.++.++ |+++...++ ++. +++.+ .+
T Consensus 266 ----------------------~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~-l~~~~~~~ 322 (341)
T PF13434_consen 266 ----------------------TNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVR-LTLRHRQT 322 (341)
T ss_dssp ----------------------GTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEE-EEEEETTT
T ss_pred ----------------------hcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEE-EEEEECCC
Confidence 0001122221 222232 234444456777665 999988874 443 66655 46
Q ss_pred ccEEEEEcCeEEeecCC
Q 010623 205 GEELTAYAPLTIVCDGC 221 (506)
Q Consensus 205 G~~~~i~a~~vV~AdG~ 221 (506)
|+..++++|+||.|||.
T Consensus 323 ~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 323 GEEETLEVDAVILATGY 339 (341)
T ss_dssp --EEEEEESEEEE---E
T ss_pred CCeEEEecCEEEEcCCc
Confidence 77778899999999995
No 325
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.36 E-value=0.0003 Score=70.35 Aligned_cols=35 Identities=40% Similarity=0.467 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~ 94 (506)
..+|+|||||++|+.+|..|++.|++|+++|+.+.
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~ 52 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPE 52 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 46999999999999999999999999999999864
No 326
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.36 E-value=0.002 Score=65.77 Aligned_cols=102 Identities=29% Similarity=0.326 Sum_probs=72.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 139 (506)
..+|+|||||+.|+.+|..|+++|++|+++|+.+........
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~-------------------------------------- 177 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD-------------------------------------- 177 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh--------------------------------------
Confidence 369999999999999999999999999999998642211000
Q ss_pred eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623 140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC 218 (506)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A 218 (506)
..+...+.+.+++. ++.++.++ +.+++...+......+...++. .+.+|+++.+
T Consensus 178 ----------------------~~~~~~~~~~l~~~-gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~d~~~~~ 232 (415)
T COG0446 178 ----------------------PEVAEELAELLEKY-GVELLLGTKVVGVEGKGNTLVVERVVGIDGE--EIKADLVIIG 232 (415)
T ss_pred ----------------------HHHHHHHHHHHHHC-CcEEEeCCceEEEEcccCcceeeEEEEeCCc--EEEeeEEEEe
Confidence 12444566666666 58887774 8888877654332113344554 4679999999
Q ss_pred cCCccc
Q 010623 219 DGCFSN 224 (506)
Q Consensus 219 dG~~S~ 224 (506)
.|..-+
T Consensus 233 ~g~~p~ 238 (415)
T COG0446 233 PGERPN 238 (415)
T ss_pred eccccc
Confidence 997764
No 327
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.34 E-value=0.00034 Score=72.91 Aligned_cols=36 Identities=42% Similarity=0.557 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE 95 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~ 95 (506)
..+|+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~ 178 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC 178 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 469999999999999999999999999999998643
No 328
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.33 E-value=0.0019 Score=66.61 Aligned_cols=94 Identities=17% Similarity=0.216 Sum_probs=65.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCce
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.... . +.
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~----------------~--~d---------------------- 188 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK----------------L--MD---------------------- 188 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch----------------h--cC----------------------
Confidence 4799999999999999999999999999998752110 0 00
Q ss_pred eeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeec
Q 010623 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (506)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~Ad 219 (506)
.++.+.+.+.+++. ++.++.+ +++++.. . .++ ..+|+ ++.+|.||.|.
T Consensus 189 ---------------------~~~~~~l~~~l~~~-gI~i~~~~~v~~i~~--~---~v~--~~~g~--~~~~D~vl~a~ 237 (438)
T PRK13512 189 ---------------------ADMNQPILDELDKR-EIPYRLNEEIDAING--N---EVT--FKSGK--VEHYDMIIEGV 237 (438)
T ss_pred ---------------------HHHHHHHHHHHHhc-CCEEEECCeEEEEeC--C---EEE--ECCCC--EEEeCEEEECc
Confidence 01233445555555 7888877 4888753 2 233 34565 36699999999
Q ss_pred CCcccc
Q 010623 220 GCFSNL 225 (506)
Q Consensus 220 G~~S~v 225 (506)
|.....
T Consensus 238 G~~pn~ 243 (438)
T PRK13512 238 GTHPNS 243 (438)
T ss_pred CCCcCh
Confidence 987643
No 329
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.32 E-value=0.0029 Score=65.38 Aligned_cols=33 Identities=30% Similarity=0.444 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
-+|+|||||..|+-+|..|++.|.+|+++++.+
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 489999999999999999999999999999874
No 330
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.26 E-value=0.00042 Score=74.83 Aligned_cols=36 Identities=39% Similarity=0.564 Sum_probs=33.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE 95 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~ 95 (506)
..+|+||||||+||++|..|++.|++|+|+|+.+..
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~ 345 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI 345 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 578999999999999999999999999999998753
No 331
>PLN02546 glutathione reductase
Probab=97.22 E-value=0.0029 Score=66.86 Aligned_cols=101 Identities=15% Similarity=0.211 Sum_probs=69.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 139 (506)
.-+|+|||||..|+-+|..|++.|.+|+|+|+.+.... ++.
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~------------------~~d--------------------- 292 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR------------------GFD--------------------- 292 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc------------------ccC---------------------
Confidence 35899999999999999999999999999998742100 000
Q ss_pred eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623 140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC 218 (506)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A 218 (506)
..+...+.+.+++. +++++.++ ++++..++++. +.+...+++ ...+|.||.|
T Consensus 293 ----------------------~~~~~~l~~~L~~~-GV~i~~~~~v~~i~~~~~g~--v~v~~~~g~--~~~~D~Viva 345 (558)
T PLN02546 293 ----------------------EEVRDFVAEQMSLR-GIEFHTEESPQAIIKSADGS--LSLKTNKGT--VEGFSHVMFA 345 (558)
T ss_pred ----------------------HHHHHHHHHHHHHC-CcEEEeCCEEEEEEEcCCCE--EEEEECCeE--EEecCEEEEe
Confidence 01233445555555 78888774 88887644432 334444443 2348999999
Q ss_pred cCCcccch
Q 010623 219 DGCFSNLR 226 (506)
Q Consensus 219 dG~~S~vR 226 (506)
.|......
T Consensus 346 ~G~~Pnt~ 353 (558)
T PLN02546 346 TGRKPNTK 353 (558)
T ss_pred eccccCCC
Confidence 99887654
No 332
>PLN02785 Protein HOTHEAD
Probab=97.22 E-value=0.00053 Score=72.87 Aligned_cols=36 Identities=42% Similarity=0.493 Sum_probs=32.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~ 94 (506)
+..||+||||||.+|+.+|..|++ +.+|+|+|+.+.
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 446999999999999999999999 689999999863
No 333
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.22 E-value=0.0034 Score=62.78 Aligned_cols=33 Identities=30% Similarity=0.321 Sum_probs=30.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCc-EEEEecCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRR-VHVIERDL 93 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~-v~vvE~~~ 93 (506)
-+|+|||+|+.|+-+|..|.+.|.+ |+|+++.+
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 4799999999999999999999997 99999763
No 334
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.22 E-value=0.0043 Score=59.30 Aligned_cols=35 Identities=34% Similarity=0.488 Sum_probs=32.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
.++|.+|||||..|+++|...+.+|.+|.|+|..-
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f 53 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPF 53 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCC
Confidence 37999999999999999999999999999999863
No 335
>PRK12831 putative oxidoreductase; Provisional
Probab=97.19 E-value=0.004 Score=64.62 Aligned_cols=34 Identities=32% Similarity=0.419 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
.-+|+|||||.+|+-+|..|.+.|.+|+++++..
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 3589999999999999999999999999999864
No 336
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.18 E-value=0.00036 Score=73.58 Aligned_cols=59 Identities=24% Similarity=0.312 Sum_probs=45.6
Q ss_pred HHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCc--cEEEEEcCeEEeecCCccc
Q 010623 166 QRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAG--EELTAYAPLTIVCDGCFSN 224 (506)
Q Consensus 166 ~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G--~~~~i~a~~vV~AdG~~S~ 224 (506)
..+...+.+.++.++..+. |+.+..+++++++|++...++ .+..+.++.||.|.|+.-.
T Consensus 206 ~a~l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~S 267 (542)
T COG2303 206 RAYLKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINS 267 (542)
T ss_pred hhcchhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCC
Confidence 3444556777899999875 999999999999999887654 3455678899999997754
No 337
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.16 E-value=0.00037 Score=71.24 Aligned_cols=37 Identities=41% Similarity=0.557 Sum_probs=33.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP 96 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~ 96 (506)
.-+|.||||||+||++|..|++.|++|+++|+.+...
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~G 159 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDG 159 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCc
Confidence 3799999999999999999999999999999987543
No 338
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.15 E-value=0.00064 Score=67.65 Aligned_cols=40 Identities=35% Similarity=0.577 Sum_probs=33.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEecCCCCCCcc
Q 010623 60 DADVIVVGAGVAGAALANTLAKDG-RRVHVIERDLSEPDRI 99 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G-~~v~vvE~~~~~~~~~ 99 (506)
...|+|||||+|||+||..|-+.| .+|+|+|..+....+.
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI 61 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRI 61 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceE
Confidence 468999999999999999998766 5999999987665543
No 339
>PLN03000 amine oxidase
Probab=97.12 E-value=0.00068 Score=73.76 Aligned_cols=37 Identities=35% Similarity=0.521 Sum_probs=34.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP 96 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~ 96 (506)
..+|+|||||++||++|..|++.|++|+|+|+++...
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riG 220 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPG 220 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCC
Confidence 4799999999999999999999999999999987544
No 340
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.06 E-value=0.0019 Score=64.46 Aligned_cols=94 Identities=27% Similarity=0.316 Sum_probs=63.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-------------CcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhccc
Q 010623 60 DADVIVVGAGVAGAALANTLAKDG-------------RRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDA 126 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G-------------~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~ 126 (506)
..+|+|||||++|.-+|..|+..- ++|+|+|+.+..-+.
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~---------------------------- 206 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM---------------------------- 206 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccC----------------------------
Confidence 368999999999999999987531 367777776521100
Q ss_pred ceecceEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCc
Q 010623 127 QRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAG 205 (506)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G 205 (506)
...++.....+.++++ ||++..++ |++++.+ +|++ .+|
T Consensus 207 ---------------------------------~~~~l~~~a~~~L~~~-GV~v~l~~~Vt~v~~~-----~v~~--~~g 245 (405)
T COG1252 207 ---------------------------------FPPKLSKYAERALEKL-GVEVLLGTPVTEVTPD-----GVTL--KDG 245 (405)
T ss_pred ---------------------------------CCHHHHHHHHHHHHHC-CCEEEcCCceEEECCC-----cEEE--ccC
Confidence 0112334445556666 89998886 8888655 3443 445
Q ss_pred cEEEEEcCeEEeecCCcc
Q 010623 206 EELTAYAPLTIVCDGCFS 223 (506)
Q Consensus 206 ~~~~i~a~~vV~AdG~~S 223 (506)
++ +|.++.+|-|.|...
T Consensus 246 ~~-~I~~~tvvWaaGv~a 262 (405)
T COG1252 246 EE-EIPADTVVWAAGVRA 262 (405)
T ss_pred Ce-eEecCEEEEcCCCcC
Confidence 43 588999999999764
No 341
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.01 E-value=0.0079 Score=64.66 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=31.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
-+|+|||||..|+-+|..|++.|.+|+|+|+.+
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~ 345 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSP 345 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence 479999999999999999999999999999975
No 342
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.97 E-value=0.0054 Score=62.98 Aligned_cols=91 Identities=23% Similarity=0.316 Sum_probs=62.0
Q ss_pred cEEEECCCHHHHHHHHHHHH--------------CCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccc
Q 010623 62 DVIVVGAGVAGAALANTLAK--------------DGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQ 127 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~--------------~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~ 127 (506)
.|+|||||++|+-+|..|+. .|.+|+|+|+.+...+. +.
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~------------------~~--------- 227 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS------------------FD--------- 227 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc------------------CC---------
Confidence 79999999999999999985 47889999987421100 00
Q ss_pred eecceEEEECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCcc
Q 010623 128 RVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGE 206 (506)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~ 206 (506)
..+.+.+.+.+++. +++++.+ +++++.. + .|+ .++|+
T Consensus 228 ----------------------------------~~~~~~~~~~L~~~-gV~v~~~~~v~~v~~--~---~v~--~~~g~ 265 (424)
T PTZ00318 228 ----------------------------------QALRKYGQRRLRRL-GVDIRTKTAVKEVLD--K---EVV--LKDGE 265 (424)
T ss_pred ----------------------------------HHHHHHHHHHHHHC-CCEEEeCCeEEEEeC--C---EEE--ECCCC
Confidence 01333445555555 7888877 4887753 2 233 45776
Q ss_pred EEEEEcCeEEeecCCcc
Q 010623 207 ELTAYAPLTIVCDGCFS 223 (506)
Q Consensus 207 ~~~i~a~~vV~AdG~~S 223 (506)
++.+|.+|.|.|...
T Consensus 266 --~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 266 --VIPTGLVVWSTGVGP 280 (424)
T ss_pred --EEEccEEEEccCCCC
Confidence 467999999999643
No 343
>PLN02976 amine oxidase
Probab=96.97 E-value=0.0011 Score=75.00 Aligned_cols=38 Identities=37% Similarity=0.427 Sum_probs=34.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP 96 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~ 96 (506)
...+|+|||||++|+++|+.|++.|++|+|+|+++...
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vG 729 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIG 729 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCC
Confidence 45899999999999999999999999999999976543
No 344
>PRK13984 putative oxidoreductase; Provisional
Probab=96.91 E-value=0.0013 Score=70.78 Aligned_cols=37 Identities=35% Similarity=0.348 Sum_probs=33.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE 95 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~ 95 (506)
...+|+|||+|++|+++|..|+++|++|+|+|+.+..
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~ 318 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP 318 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4578999999999999999999999999999998643
No 345
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.84 E-value=0.011 Score=59.22 Aligned_cols=101 Identities=28% Similarity=0.332 Sum_probs=72.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 139 (506)
.-.|++||||-.|+-+|..|...+.+|+++++.+.+-++-. +
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf---------------~----------------------- 254 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLF---------------G----------------------- 254 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhh---------------h-----------------------
Confidence 46799999999999999999999999999999864222100 0
Q ss_pred eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeC-CeEEEEEEEeCCccEEEEEcCeEEe
Q 010623 140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEK-GTIKGVQYKTKAGEELTAYAPLTIV 217 (506)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~-~~v~~v~v~~~~G~~~~i~a~~vV~ 217 (506)
..+.+...+..++. ++++..++ +.+++.+. +++. .+...||+ ++.||+||.
T Consensus 255 ----------------------~~i~~~~~~y~e~k-gVk~~~~t~~s~l~~~~~Gev~--~V~l~dg~--~l~adlvv~ 307 (478)
T KOG1336|consen 255 ----------------------PSIGQFYEDYYENK-GVKFYLGTVVSSLEGNSDGEVS--EVKLKDGK--TLEADLVVV 307 (478)
T ss_pred ----------------------HHHHHHHHHHHHhc-CeEEEEecceeecccCCCCcEE--EEEeccCC--EeccCeEEE
Confidence 01223334444444 89999887 78887665 5544 45567887 467999999
Q ss_pred ecCCcccc
Q 010623 218 CDGCFSNL 225 (506)
Q Consensus 218 AdG~~S~v 225 (506)
+.|+.+.+
T Consensus 308 GiG~~p~t 315 (478)
T KOG1336|consen 308 GIGIKPNT 315 (478)
T ss_pred eecccccc
Confidence 99987654
No 346
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.82 E-value=0.018 Score=55.98 Aligned_cols=111 Identities=18% Similarity=0.238 Sum_probs=77.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG 138 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 138 (506)
.+-..+|||||..||-.+.--.+.|-+|+++|-.+.... .+ ..
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~-----~m-------------D~------------------- 252 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGG-----VM-------------DG------------------- 252 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcc-----cc-------------CH-------------------
Confidence 346789999999999999999999999999997743111 00 10
Q ss_pred ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEE
Q 010623 139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTI 216 (506)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV 216 (506)
++.....+.+.++ ++.+..++ |+....++++...+++.+ .+|+.++++||.+.
T Consensus 253 ------------------------Eisk~~qr~L~kQ-gikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlL 307 (506)
T KOG1335|consen 253 ------------------------EISKAFQRVLQKQ-GIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLL 307 (506)
T ss_pred ------------------------HHHHHHHHHHHhc-CceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEE
Confidence 1222233333344 78888885 999988877444477766 47778889999999
Q ss_pred eecCCcccchhhccCC
Q 010623 217 VCDGCFSNLRRSLCNP 232 (506)
Q Consensus 217 ~AdG~~S~vR~~l~~~ 232 (506)
.|.|.+- .-+-|+++
T Consensus 308 VsiGRrP-~t~GLgle 322 (506)
T KOG1335|consen 308 VSIGRRP-FTEGLGLE 322 (506)
T ss_pred EEccCcc-cccCCChh
Confidence 9999653 33445443
No 347
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.79 E-value=0.012 Score=62.57 Aligned_cols=34 Identities=38% Similarity=0.496 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
.-+|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 3589999999999999999999999999999874
No 348
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.73 E-value=0.002 Score=62.28 Aligned_cols=37 Identities=30% Similarity=0.322 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCC
Q 010623 60 DADVIVVGAGVAGAALANTLAK--DGRRVHVIERDLSEP 96 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~--~G~~v~vvE~~~~~~ 96 (506)
...|+|||+||||+.+|..|-+ .+++|.|+|+.|.+-
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF 58 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF 58 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence 3599999999999999998877 468999999998654
No 349
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.69 E-value=0.02 Score=63.23 Aligned_cols=33 Identities=30% Similarity=0.371 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCc-EEEEecCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRR-VHVIERDL 93 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~-v~vvE~~~ 93 (506)
-+|+|||||.+|+-+|..+.+.|.+ |+++++++
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 5899999999999999999999997 99999874
No 350
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.62 E-value=0.02 Score=65.01 Aligned_cols=95 Identities=18% Similarity=0.186 Sum_probs=66.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG 138 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 138 (506)
.-+|+|||+|+.|+-+|..|++.|. .|+|+|..+.. . .
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~---------~----~---------------------------- 355 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV---------S----P---------------------------- 355 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch---------h----H----------------------------
Confidence 3589999999999999999999996 57899876321 0 0
Q ss_pred ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEe
Q 010623 139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV 217 (506)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~ 217 (506)
.+.+.+++. ++.++.++ ++++..+ +++.+|++...+|+..++.||.|+.
T Consensus 356 ----------------------------~l~~~L~~~-GV~i~~~~~v~~i~g~-~~v~~V~l~~~~g~~~~i~~D~V~v 405 (985)
T TIGR01372 356 ----------------------------EARAEAREL-GIEVLTGHVVAATEGG-KRVSGVAVARNGGAGQRLEADALAV 405 (985)
T ss_pred ----------------------------HHHHHHHHc-CCEEEcCCeEEEEecC-CcEEEEEEEecCCceEEEECCEEEE
Confidence 012233444 78888775 7777544 4455677764345545688999999
Q ss_pred ecCCcccc
Q 010623 218 CDGCFSNL 225 (506)
Q Consensus 218 AdG~~S~v 225 (506)
+.|....+
T Consensus 406 a~G~~Pnt 413 (985)
T TIGR01372 406 SGGWTPVV 413 (985)
T ss_pred cCCcCchh
Confidence 99987654
No 351
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.53 E-value=0.0025 Score=62.95 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHcCCCEEEEeceEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcccchhhc
Q 010623 163 RFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSL 229 (506)
Q Consensus 163 ~l~~~L~~~~~~~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S~vR~~l 229 (506)
.+..++.+.+++.|+..+...+|.++.-+++++.||.+ +||++ ++++.||-=.+.|-+.-+.+
T Consensus 265 avs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L--~dG~e--v~sk~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 265 AVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRL--ADGTE--VRSKIVVSNATPWDTFEKLL 327 (561)
T ss_pred HHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEe--cCCcE--EEeeeeecCCchHHHHHHhC
Confidence 45667888888885554444579999988888888774 67874 56898887777666554444
No 352
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.37 E-value=0.04 Score=59.90 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=29.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~ 93 (506)
-+|+|||||..|+-+|..+.+.|. +|+++++++
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 479999999999999999999997 699998864
No 353
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.29 E-value=0.0054 Score=66.77 Aligned_cols=36 Identities=39% Similarity=0.523 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE 95 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~ 95 (506)
-..|.|||.||+||++|-.|-+.|+.|+|+||.+..
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRV 1820 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCc
Confidence 478999999999999999999999999999998643
No 354
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.28 E-value=0.047 Score=61.43 Aligned_cols=33 Identities=27% Similarity=0.420 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
-+|+|||||.+|+-+|..+.+.|.+|+++.+++
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 479999999999999999999999999998873
No 355
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.25 E-value=0.049 Score=55.36 Aligned_cols=35 Identities=31% Similarity=0.492 Sum_probs=30.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKD----GRRVHVIERDLSE 95 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~----G~~v~vvE~~~~~ 95 (506)
.++=|||+|+|+|++|.+|-|. |-++.|+|+.+.+
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~ 41 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVP 41 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCC
Confidence 4678999999999999999986 4699999998643
No 356
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.20 E-value=0.06 Score=55.96 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=30.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~ 93 (506)
-.|+|||||.+|+-+|..+.+.|. +|+|+++.+
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 589999999999999999999996 799999874
No 357
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=96.20 E-value=0.0037 Score=58.97 Aligned_cols=36 Identities=28% Similarity=0.454 Sum_probs=30.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC-CC-cEEEEecCC
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKD-GR-RVHVIERDL 93 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~-G~-~v~vvE~~~ 93 (506)
..++.|+|||||-+|++.|.-+.+. |- +|.|+|...
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 4579999999999999999888764 43 899999764
No 358
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.12 E-value=0.024 Score=59.12 Aligned_cols=39 Identities=33% Similarity=0.418 Sum_probs=34.2
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCC
Q 010623 57 CPFDADVIVVGAGVAGAALANTLAKD-GRRVHVIERDLSE 95 (506)
Q Consensus 57 ~~~~~dVvIVGgG~aGl~~A~~La~~-G~~v~vvE~~~~~ 95 (506)
...+||.||||||-||+.+|..|++. ..+|+|+|+...+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 34579999999999999999999986 5799999998654
No 359
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.07 E-value=0.025 Score=55.81 Aligned_cols=42 Identities=29% Similarity=0.304 Sum_probs=31.7
Q ss_pred CEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcc
Q 010623 177 NVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS 223 (506)
Q Consensus 177 ~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S 223 (506)
++.+..++ |.++..+ .+.+.+.||+..+|..-++|.|+|...
T Consensus 287 ~I~~~~~t~Vk~V~~~-----~I~~~~~~g~~~~iPYG~lVWatG~~~ 329 (491)
T KOG2495|consen 287 GIDLDTGTMVKKVTEK-----TIHAKTKDGEIEEIPYGLLVWATGNGP 329 (491)
T ss_pred cceeecccEEEeecCc-----EEEEEcCCCceeeecceEEEecCCCCC
Confidence 78888886 6666433 255666789888899999999999754
No 360
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.00 E-value=0.067 Score=53.70 Aligned_cols=29 Identities=38% Similarity=0.628 Sum_probs=24.3
Q ss_pred CcEEEECCCHHHHHHHHHHHH----CC--CcEEEE
Q 010623 61 ADVIVVGAGVAGAALANTLAK----DG--RRVHVI 89 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~----~G--~~v~vv 89 (506)
-+|+|||||++|+-+|..|++ .| .+|+|+
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li 180 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI 180 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 489999999999999999985 34 367777
No 361
>PLN02852 ferredoxin-NADP+ reductase
Probab=95.90 E-value=0.18 Score=52.30 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=20.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHC
Q 010623 61 ADVIVVGAGVAGAALANTLAKD 82 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~ 82 (506)
-+|+|||+|.+|+-+|..|.+.
T Consensus 167 k~VvVIGgGnvAlD~Ar~L~~~ 188 (491)
T PLN02852 167 DTAVVLGQGNVALDCARILLRP 188 (491)
T ss_pred CEEEEECCCHHHHHHHHHHHhC
Confidence 5899999999999999998876
No 362
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.70 E-value=0.012 Score=51.31 Aligned_cols=32 Identities=44% Similarity=0.616 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
.|.|+|||..|.++|..|+++|++|+++.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999999874
No 363
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.70 E-value=0.036 Score=58.54 Aligned_cols=97 Identities=22% Similarity=0.327 Sum_probs=65.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCcee
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRT 141 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (506)
.-+|||||.-||-+|..|...|.++.|++-.+. .+..++...
T Consensus 147 ~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~---------------------lMerQLD~~----------------- 188 (793)
T COG1251 147 KAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPT---------------------LMERQLDRT----------------- 188 (793)
T ss_pred CcEEEccchhhhHHHHHHHhCCCceEEEeecch---------------------HHHHhhhhH-----------------
Confidence 469999999999999999999999999986641 111111110
Q ss_pred eeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecC
Q 010623 142 QISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDG 220 (506)
Q Consensus 142 ~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG 220 (506)
-...|...+++. +++++.++ .+++.. .+++.+ ++++||+. +.||+||.|+|
T Consensus 189 ----------------------ag~lL~~~le~~-Gi~~~l~~~t~ei~g-~~~~~~--vr~~DG~~--i~ad~VV~a~G 240 (793)
T COG1251 189 ----------------------AGRLLRRKLEDL-GIKVLLEKNTEEIVG-EDKVEG--VRFADGTE--IPADLVVMAVG 240 (793)
T ss_pred ----------------------HHHHHHHHHHhh-cceeecccchhhhhc-Ccceee--EeecCCCc--ccceeEEEecc
Confidence 112455555555 77777775 445444 444444 44778874 56999999999
Q ss_pred Cccc
Q 010623 221 CFSN 224 (506)
Q Consensus 221 ~~S~ 224 (506)
.+-.
T Consensus 241 IrPn 244 (793)
T COG1251 241 IRPN 244 (793)
T ss_pred cccc
Confidence 7653
No 364
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.15 Score=49.46 Aligned_cols=94 Identities=23% Similarity=0.293 Sum_probs=68.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 139 (506)
.-+|+|||||-+.+--|+.|++.+-+|+++=|++....
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra------------------------------------------ 180 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA------------------------------------------ 180 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc------------------------------------------
Confidence 34999999999999999999999999999988853111
Q ss_pred eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEee
Q 010623 140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC 218 (506)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~A 218 (506)
.+.+.+.+.+.+++.+++++ +.++.-++ +.+|++++..|++.++..|.+..+
T Consensus 181 -------------------------~~~~~~~l~~~~~i~~~~~~~i~ei~G~~--v~~v~l~~~~~~~~~~~~~gvf~~ 233 (305)
T COG0492 181 -------------------------EEILVERLKKNVKIEVLTNTVVKEILGDD--VEGVVLKNVKGEEKELPVDGVFIA 233 (305)
T ss_pred -------------------------CHHHHHHHHhcCCeEEEeCCceeEEecCc--cceEEEEecCCceEEEEeceEEEe
Confidence 12344455555578888874 88887665 667887765566566667777777
Q ss_pred cCCc
Q 010623 219 DGCF 222 (506)
Q Consensus 219 dG~~ 222 (506)
-|..
T Consensus 234 iG~~ 237 (305)
T COG0492 234 IGHL 237 (305)
T ss_pred cCCC
Confidence 6653
No 365
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.69 E-value=0.075 Score=52.34 Aligned_cols=148 Identities=18% Similarity=0.144 Sum_probs=81.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEecCCCCCCcccccccccchHH--HHHHhCchhHHhhcccceecceEE
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKDG-RRVHVIERDLSEPDRIVGELLQPGGYL--KLIELGLEDCVEQIDAQRVFGYAL 134 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~G-~~v~vvE~~~~~~~~~~g~~l~~~~~~--~l~~~g~~~~~~~~~~~~~~~~~~ 134 (506)
...+|++.||-||.-|++|+.|..++ .+++.+||.+...-++. ..+....++ .++.| + ... .+...+.+
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpG-mllegstlQv~FlkDL-----V-Tl~-~PTs~ySF 74 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPG-MLLEGSTLQVPFLKDL-----V-TLV-DPTSPYSF 74 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCC-cccCCccccccchhhh-----c-ccc-CCCCchHH
Confidence 45699999999999999999999876 78999999986554432 112111111 11111 1 000 01111111
Q ss_pred E----ECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeC-CeEEEEEEEeCCccEE
Q 010623 135 F----KDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEK-GTIKGVQYKTKAGEEL 208 (506)
Q Consensus 135 ~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~-~~v~~v~v~~~~G~~~ 208 (506)
. ..++. +.+- ......+.|.++.+.+.=.+... -.+++++ |+++...+ +.....-+.+.+++.
T Consensus 75 LNYL~~h~RL----y~Fl----~~e~f~i~R~Ey~dY~~Waa~~l--~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~- 143 (436)
T COG3486 75 LNYLHEHGRL----YEFL----NYETFHIPRREYNDYCQWAASQL--PSLRFGEEVTDISSLDGDAVVRLFVVTANGTV- 143 (436)
T ss_pred HHHHHHcchH----hhhh----hhhcccccHHHHHHHHHHHHhhC--CccccCCeeccccccCCcceeEEEEEcCCCcE-
Confidence 0 00100 0000 00112457778888877666665 3566775 88774332 222222344556654
Q ss_pred EEEcCeEEeecCCcccc
Q 010623 209 TAYAPLTIVCDGCFSNL 225 (506)
Q Consensus 209 ~i~a~~vV~AdG~~S~v 225 (506)
.+|+-||...|..-.+
T Consensus 144 -y~ar~lVlg~G~~P~I 159 (436)
T COG3486 144 -YRARNLVLGVGTQPYI 159 (436)
T ss_pred -EEeeeEEEccCCCcCC
Confidence 5699999999976544
No 366
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.64 E-value=0.014 Score=59.35 Aligned_cols=38 Identities=32% Similarity=0.544 Sum_probs=29.5
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623 57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (506)
Q Consensus 57 ~~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~ 94 (506)
|+.++||+|+|-|..-+.+|.+|++.|.+|+.+|+++.
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~y 38 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDY 38 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCC
Confidence 45689999999999999999999999999999999974
No 367
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.63 E-value=0.19 Score=52.56 Aligned_cols=34 Identities=32% Similarity=0.444 Sum_probs=29.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDLS 94 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~~ 94 (506)
-.|+|||||..|+-+|..+.+.|. +|+++|+.+.
T Consensus 284 k~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 284 KKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 479999999999999888878775 7999998753
No 368
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=95.60 E-value=0.13 Score=58.61 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=28.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCc-EEEEecC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRR-VHVIERD 92 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~-v~vvE~~ 92 (506)
.-+|+|||||.+|+=+|..+.+.|.+ |+++.++
T Consensus 571 Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr 604 (1006)
T PRK12775 571 GKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR 604 (1006)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence 35899999999999999999999985 7777765
No 369
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.54 E-value=0.22 Score=49.76 Aligned_cols=55 Identities=18% Similarity=0.247 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcc
Q 010623 162 GRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS 223 (506)
Q Consensus 162 ~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S 223 (506)
..+..+|...+++. +|+++.++ |+++ ++++ ..+...++. .+++||.||.|+|+.|
T Consensus 86 ~sVv~~L~~~l~~~-gV~i~~~~~V~~i--~~~~---~~v~~~~~~-~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 86 APLLRAWLKRLAEQ-GVQFHTRHRWIGW--QGGT---LRFETPDGQ-STIEADAVVLALGGAS 141 (376)
T ss_pred HHHHHHHHHHHHHC-CCEEEeCCEEEEE--eCCc---EEEEECCCc-eEEecCEEEEcCCCcc
Confidence 46888999999887 88888885 9998 3332 333333332 2477999999999977
No 370
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.52 E-value=0.015 Score=52.00 Aligned_cols=32 Identities=34% Similarity=0.588 Sum_probs=28.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
.|.|||+|..|...|..+++.|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 48999999999999999999999999999975
No 371
>PRK13984 putative oxidoreductase; Provisional
Probab=95.49 E-value=0.17 Score=54.51 Aligned_cols=30 Identities=23% Similarity=0.471 Sum_probs=25.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC------cEEEEe
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGR------RVHVIE 90 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~------~v~vvE 90 (506)
-+|+|||||..|+-+|..|++.|. +|+++.
T Consensus 419 k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 419 RSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 589999999999999999998763 566653
No 372
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=95.46 E-value=0.063 Score=57.21 Aligned_cols=62 Identities=18% Similarity=0.255 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEeecCCcccc
Q 010623 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL 225 (506)
Q Consensus 163 ~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~AdG~~S~v 225 (506)
.+...|.+.+.+. ++++..++ ++++..+++++.||.+.+ .+|+...++|+.||.|+|+++.+
T Consensus 120 ~i~~~L~~~~~~~-gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~~ 183 (565)
T TIGR01816 120 AILHTLYQQNLKA-DTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYGRI 183 (565)
T ss_pred HHHHHHHHHHHhC-CCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCcccc
Confidence 5788898888876 78888775 999998888999998754 57887789999999999999864
No 373
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.23 Score=47.84 Aligned_cols=85 Identities=27% Similarity=0.357 Sum_probs=64.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEEC
Q 010623 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD 137 (506)
Q Consensus 58 ~~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 137 (506)
-..-||.|||||-+|.-+|+.|+--=-.|+|+|=.++.
T Consensus 352 F~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL------------------------------------------ 389 (520)
T COG3634 352 FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL------------------------------------------ 389 (520)
T ss_pred cCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhh------------------------------------------
Confidence 34579999999999999999998655579999866421
Q ss_pred CceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeC-CccEEE
Q 010623 138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTK-AGEELT 209 (506)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~-~G~~~~ 209 (506)
+-.+.|.+.+.+.+++++..+. -+++.-++++|+|..+.+. +|+...
T Consensus 390 -------------------------kAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~ 438 (520)
T COG3634 390 -------------------------KADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHH 438 (520)
T ss_pred -------------------------hhHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeE
Confidence 1234667777888899998884 7888888889999888774 555443
No 374
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.28 E-value=0.022 Score=52.80 Aligned_cols=57 Identities=26% Similarity=0.464 Sum_probs=41.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCc-----cccc--ccccchHHHHHHhCch
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDR-----IVGE--LLQPGGYLKLIELGLE 118 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~-----~~g~--~l~~~~~~~l~~~g~~ 118 (506)
+++|||+|..|.+.|..|++.|++|+++|+++..-.. .... .....-...|+++|+.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~ 65 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGID 65 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCC
Confidence 6899999999999999999999999999998643211 1111 1223335677787775
No 375
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.21 E-value=0.022 Score=59.15 Aligned_cols=33 Identities=36% Similarity=0.409 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~ 94 (506)
.|+|||.|++|+++|..|++.|++|++.|+.+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 589999999999999999999999999998854
No 376
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.13 E-value=0.037 Score=57.87 Aligned_cols=33 Identities=39% Similarity=0.551 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
-+|+|||+|++|+.+|..|+++|++|+++|+.+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 479999999999999999999999999999774
No 377
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=95.13 E-value=0.11 Score=52.29 Aligned_cols=33 Identities=30% Similarity=0.586 Sum_probs=27.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEecC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGR--RVHVIERD 92 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~ 92 (506)
...|+|||||++|..|+..+.+.|. +.+++-+.
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~ 108 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKRE 108 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEecc
Confidence 4689999999999999999999886 56666544
No 378
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.09 E-value=0.023 Score=50.98 Aligned_cols=33 Identities=33% Similarity=0.526 Sum_probs=26.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
+.|.|||.|-.||.+|..||+.|++|+.+|.++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 368999999999999999999999999999885
No 379
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=94.97 E-value=0.04 Score=57.31 Aligned_cols=34 Identities=29% Similarity=0.559 Sum_probs=32.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~ 94 (506)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 200 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDR 200 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence 5899999999999999999999999999999864
No 380
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.92 E-value=0.31 Score=52.89 Aligned_cols=33 Identities=21% Similarity=0.162 Sum_probs=29.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~ 93 (506)
-+|+|||||..|+-+|..+.+.|. +|+++++++
T Consensus 452 k~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~ 485 (639)
T PRK12809 452 KRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD 485 (639)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 589999999999999999889995 799998864
No 381
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=94.81 E-value=0.39 Score=54.08 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=30.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC-CC-cEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKD-GR-RVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~-G~-~v~vvE~~~ 93 (506)
.-+|+|||||.+|+-+|..+.+. |. +|++++++.
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 46899999999999999998886 86 799999874
No 382
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.74 E-value=0.048 Score=47.02 Aligned_cols=31 Identities=32% Similarity=0.656 Sum_probs=29.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 63 VIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 63 VvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
|+|+|+|..|+..|..|++.|.+|.++.|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999999873
No 383
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.44 E-value=0.044 Score=53.64 Aligned_cols=32 Identities=34% Similarity=0.585 Sum_probs=30.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
+|.|||+|..|.+.|..|+++|++|+++|+++
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 69999999999999999999999999999985
No 384
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.11 E-value=0.078 Score=48.34 Aligned_cols=32 Identities=34% Similarity=0.492 Sum_probs=30.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~ 92 (506)
-.|+|||||.+|..-+..|.+.|.+|+|++..
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 48999999999999999999999999999875
No 385
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.09 E-value=0.074 Score=51.94 Aligned_cols=34 Identities=35% Similarity=0.452 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
..+|+|+|+|..|...|..|++.|.+|+++.|..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 3579999999999999999999999999999963
No 386
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.08 E-value=0.081 Score=46.65 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=30.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
+..|+|+|+|.+|..||..|...|++|+++|..+
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 4799999999999999999999999999999874
No 387
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.00 E-value=0.085 Score=51.72 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
..+|+|||+|..|...|..|++.|++|+++.|+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3689999999999999999999999999999863
No 388
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=93.92 E-value=0.23 Score=53.01 Aligned_cols=35 Identities=29% Similarity=0.400 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~ 94 (506)
+-+|+|+|.|..|-.+|..|.++|++|+++|++++
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~ 451 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT 451 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence 57899999999999999999999999999999853
No 389
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=93.90 E-value=0.73 Score=51.83 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=29.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC-C-CcEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKD-G-RRVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~-G-~~v~vvE~~~ 93 (506)
.-+|+|||||.+|+-+|..+.+. | .+|+++.+++
T Consensus 668 GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 668 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 35899999999999999998887 5 3899999874
No 390
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.82 E-value=0.091 Score=45.69 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=28.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEec
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIER 91 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~ 91 (506)
-.|+|||||..|..-|..|.+.|.+|+|+.+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 5899999999999999999999999999953
No 391
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.81 E-value=0.074 Score=51.43 Aligned_cols=33 Identities=33% Similarity=0.396 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
..|.|||+|..|...|..|+++|++|+++|+++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 369999999999999999999999999999874
No 392
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.75 E-value=0.088 Score=51.08 Aligned_cols=33 Identities=30% Similarity=0.361 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
..|.|||+|..|...|..|+++|++|+++|+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 469999999999999999999999999999874
No 393
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.75 E-value=0.1 Score=47.45 Aligned_cols=33 Identities=30% Similarity=0.508 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERD 92 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~ 92 (506)
...|+|||+|-.|...|..|++.|+ +++|+|.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4789999999999999999999999 69999988
No 394
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=93.73 E-value=2.7 Score=42.78 Aligned_cols=53 Identities=21% Similarity=0.137 Sum_probs=34.9
Q ss_pred HHHHHHHHcCCCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCcc
Q 010623 166 QRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS 223 (506)
Q Consensus 166 ~~L~~~~~~~~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~S 223 (506)
+.|.+.+++. +.+++.+ +|+++..+++++. +.+. .+|+ ++.||.||.|.-...
T Consensus 201 ~~l~~~l~~~-g~~i~~~~~V~~i~~~~~~~~-~~~~-~~g~--~~~~d~vi~a~p~~~ 254 (419)
T TIGR03467 201 EPARRWLDSR-GGEVRLGTRVRSIEANAGGIR-ALVL-SGGE--TLPADAVVLAVPPRH 254 (419)
T ss_pred HHHHHHHHHc-CCEEEcCCeeeEEEEcCCcce-EEEe-cCCc--cccCCEEEEcCCHHH
Confidence 3356666666 5577777 5999998877543 3333 3554 366999999876554
No 395
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=93.65 E-value=0.08 Score=44.74 Aligned_cols=32 Identities=34% Similarity=0.435 Sum_probs=28.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623 63 VIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (506)
Q Consensus 63 VvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~ 94 (506)
++|+|+|+.+.++|..++..|++|+|+|.+++
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999998864
No 396
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.64 E-value=0.077 Score=51.25 Aligned_cols=33 Identities=42% Similarity=0.493 Sum_probs=31.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~ 94 (506)
.|.|||+|..|...|..+++.|++|+++|++++
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 799999999999999999999999999999864
No 397
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.61 E-value=0.085 Score=54.66 Aligned_cols=33 Identities=45% Similarity=0.614 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
-.|+|+|+|.+|+++|..|++.|++|+++|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 579999999999999999999999999999874
No 398
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.60 E-value=0.08 Score=51.25 Aligned_cols=32 Identities=31% Similarity=0.550 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
.|.|||+|..|...|..|+++|++|+++|+++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 58999999999999999999999999999885
No 399
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.59 E-value=0.086 Score=51.89 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
++|.|||.|-+||+.|..|++.|++|+.+|.++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 368999999999999999999999999999985
No 400
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.52 E-value=0.12 Score=49.03 Aligned_cols=34 Identities=38% Similarity=0.543 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~ 93 (506)
+..|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 3799999999999999999999996 899999874
No 401
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.49 E-value=0.091 Score=51.37 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=30.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
.|.|||+|..|...|..++.+|++|+++|..+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 69999999999999999999999999999885
No 402
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.46 E-value=0.063 Score=43.03 Aligned_cols=33 Identities=36% Similarity=0.515 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~ 92 (506)
.-.|+|||||..|..-+..|.+.|.+|+|+.+.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 368999999999999999999999999999887
No 403
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.43 E-value=0.11 Score=42.48 Aligned_cols=31 Identities=39% Similarity=0.650 Sum_probs=28.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 63 VIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 63 VvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
|+|+|.|..|..+|..|.+.+.+|+++|+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7999999999999999999888999999985
No 404
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=93.40 E-value=0.095 Score=51.07 Aligned_cols=32 Identities=28% Similarity=0.561 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
+|+|||+|..|...|..|++.|++|++++|++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 58999999999999999999999999999863
No 405
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.38 E-value=0.1 Score=50.89 Aligned_cols=30 Identities=37% Similarity=0.650 Sum_probs=28.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEec
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIER 91 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~ 91 (506)
+|+|+|+|..|.+.|..|++.|++|++++|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 599999999999999999999999999998
No 406
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=93.30 E-value=0.9 Score=41.15 Aligned_cols=102 Identities=23% Similarity=0.254 Sum_probs=72.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 139 (506)
.-..+|||||=+-+-=|++|.+.+-+|.++-|++.. +
T Consensus 157 nk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~f-----------------R-------------------------- 193 (322)
T KOG0404|consen 157 NKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHF-----------------R-------------------------- 193 (322)
T ss_pred CCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhh-----------------h--------------------------
Confidence 456889999999999999999999999999887421 0
Q ss_pred eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEe
Q 010623 140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIV 217 (506)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~ 217 (506)
-...+.+++.+.+++++.+++ +++..-+.+.+.++++++ .+|++.++..+-+.-
T Consensus 194 ------------------------As~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf 249 (322)
T KOG0404|consen 194 ------------------------ASKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFF 249 (322)
T ss_pred ------------------------HHHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEE
Confidence 112556677777889888886 566655555555677765 567766677777777
Q ss_pred ecCCcccchhhc
Q 010623 218 CDGCFSNLRRSL 229 (506)
Q Consensus 218 AdG~~S~vR~~l 229 (506)
+-| ||+--+.+
T Consensus 250 ~IG-H~Pat~~l 260 (322)
T KOG0404|consen 250 AIG-HSPATKFL 260 (322)
T ss_pred Eec-CCchhhHh
Confidence 766 44444444
No 407
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.29 E-value=0.11 Score=52.06 Aligned_cols=34 Identities=26% Similarity=0.516 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
..+|+|+|+|.+|+.+|..|.+.|.+|+++|+++
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 3579999999999999999999999999999874
No 408
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.28 E-value=0.092 Score=54.51 Aligned_cols=34 Identities=35% Similarity=0.463 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
.-+|+|+|+|++|+.++..+...|.+|+++|.++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5799999999999999999999999999999874
No 409
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.28 E-value=0.096 Score=50.77 Aligned_cols=32 Identities=31% Similarity=0.538 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
.|.|||+|..|...|..|+++|++|+++|+++
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 59999999999999999999999999999875
No 410
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.21 E-value=0.11 Score=52.46 Aligned_cols=34 Identities=35% Similarity=0.427 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
.-.|+|+|+|+.|+.+|..|+..|.+|+++|.++
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 4589999999999999999999999999999875
No 411
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.20 E-value=0.13 Score=43.53 Aligned_cols=34 Identities=29% Similarity=0.726 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~ 93 (506)
+..|+|+|+|..|...|..|++.|+ +++|+|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 3689999999999999999999999 799999874
No 412
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=93.16 E-value=0.097 Score=47.50 Aligned_cols=34 Identities=35% Similarity=0.581 Sum_probs=29.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
.-+|+|||+|.++.-+|..|++.|.+|+++=|.+
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 4789999999999999999999999999999875
No 413
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.14 E-value=0.18 Score=42.63 Aligned_cols=33 Identities=36% Similarity=0.595 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCc-EEEEecC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRR-VHVIERD 92 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~-v~vvE~~ 92 (506)
.-.|+|||+|-+|-+++..|+..|.+ ++|+-|.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 46899999999999999999999997 9999887
No 414
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=92.97 E-value=0.34 Score=51.08 Aligned_cols=34 Identities=32% Similarity=0.476 Sum_probs=29.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
.-+|+|||+|.+|.=.|..|++...+|.+.-|+.
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 3589999999999999999999999999988874
No 415
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=92.91 E-value=0.17 Score=46.04 Aligned_cols=32 Identities=34% Similarity=0.470 Sum_probs=29.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~ 92 (506)
-.|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 58999999999999999999999999999754
No 416
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.85 E-value=0.12 Score=49.82 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~ 94 (506)
+|.|||+|..|...|..++++|++|+++|.++.
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 699999999999999999999999999998753
No 417
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=92.67 E-value=0.59 Score=52.08 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=25.5
Q ss_pred CcEEEECCCHHHHHHHHHHHH---CCCcEEEEecC
Q 010623 61 ADVIVVGAGVAGAALANTLAK---DGRRVHVIERD 92 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~---~G~~v~vvE~~ 92 (506)
-+|+|||||.+|+=+|..+.+ .+..+.+.+..
T Consensus 551 k~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~ 585 (1028)
T PRK06567 551 MPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYI 585 (1028)
T ss_pred CCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhh
Confidence 579999999999999986654 46777777764
No 418
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.52 E-value=0.17 Score=49.39 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC--cEEEEecCCC
Q 010623 62 DVIVVGAGVAGAALANTLAKDGR--RVHVIERDLS 94 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~~ 94 (506)
+|.|||+|.+|.++|+.|++.|+ .+.++|++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 69999999999999999999994 8999998753
No 419
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=92.45 E-value=0.19 Score=49.71 Aligned_cols=34 Identities=38% Similarity=0.701 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~ 93 (506)
+..|+|||+|-.|..+|..|++.|+ +++|+|++.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4689999999999999999999999 899999985
No 420
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=92.44 E-value=0.18 Score=50.12 Aligned_cols=32 Identities=41% Similarity=0.590 Sum_probs=30.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~ 92 (506)
.+|.|||+|..|...|..|++.|++|+++++.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 46999999999999999999999999999985
No 421
>PRK04148 hypothetical protein; Provisional
Probab=92.40 E-value=0.14 Score=42.91 Aligned_cols=32 Identities=25% Similarity=0.328 Sum_probs=29.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
..|++||.| .|...|..|++.|++|+.+|.++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence 479999999 99999999999999999999885
No 422
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=92.12 E-value=1.9 Score=43.03 Aligned_cols=116 Identities=18% Similarity=0.186 Sum_probs=69.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG 138 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 138 (506)
.+-.|+|+|.|=+|.++.-.|-..-++|+|+..+.... +.| +| .
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFl-------FTP----LL---------p---------------- 97 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFL-------FTP----LL---------P---------------- 97 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccceE-------Eee----cc---------C----------------
Confidence 46799999999999999888877788999997663100 000 00 0
Q ss_pred ceeeeecCCcCCCCCcccccccchHHHHHHHHHHHc-CCCEEEEeceEEEEEeeCCeEEEEEEEeCCc--cEEEEEcCeE
Q 010623 139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAAS-LPNVRLEQGTVTSLLEEKGTIKGVQYKTKAG--EELTAYAPLT 215 (506)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~-~~~v~i~~~~v~~~~~~~~~v~~v~v~~~~G--~~~~i~a~~v 215 (506)
..+.| .++-..+.+-.+..++. .+++.++....+++..+...|. +...++++ .+..+.+||+
T Consensus 98 -------------S~~vG-Tve~rSIvEPIr~i~r~k~~~~~y~eAec~~iDp~~k~V~-~~s~t~~~~~~e~~i~YDyL 162 (491)
T KOG2495|consen 98 -------------STTVG-TVELRSIVEPIRAIARKKNGEVKYLEAECTKIDPDNKKVH-CRSLTADSSDKEFVIGYDYL 162 (491)
T ss_pred -------------Ccccc-ceeehhhhhhHHHHhhccCCCceEEecccEeecccccEEE-EeeeccCCCcceeeecccEE
Confidence 00000 11111122222222222 3367777777888877766543 44444444 4567889999
Q ss_pred EeecCCcccc
Q 010623 216 IVCDGCFSNL 225 (506)
Q Consensus 216 V~AdG~~S~v 225 (506)
|.|.|+...+
T Consensus 163 ViA~GA~~~T 172 (491)
T KOG2495|consen 163 VIAVGAEPNT 172 (491)
T ss_pred EEeccCCCCC
Confidence 9999998865
No 423
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=92.07 E-value=0.24 Score=46.40 Aligned_cols=34 Identities=29% Similarity=0.476 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~ 93 (506)
..+|+|||+|..|..+|..|++.|+ +++++|.+.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 4799999999999999999999998 889999874
No 424
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=92.05 E-value=0.25 Score=44.94 Aligned_cols=34 Identities=29% Similarity=0.524 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~ 93 (506)
+..|+|||.|..|..+|..|++.|+ +++++|.+.
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 5799999999999999999999998 899999874
No 425
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=92.05 E-value=0.23 Score=49.04 Aligned_cols=34 Identities=35% Similarity=0.727 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~ 93 (506)
+..|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 4789999999999999999999999 999999974
No 426
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=91.94 E-value=0.25 Score=48.14 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~ 93 (506)
..|.|||+|..|...|+.|+.+|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 479999999999999999999887 899999853
No 427
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.91 E-value=0.23 Score=48.57 Aligned_cols=33 Identities=27% Similarity=0.521 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
..|.|||+|..|.+.|..|++.|++|+++|+++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 369999999999999999999999999999874
No 428
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=91.75 E-value=0.3 Score=42.95 Aligned_cols=33 Identities=30% Similarity=0.386 Sum_probs=30.2
Q ss_pred CCcEEEECCCH-HHHHHHHHHHHCCCcEEEEecC
Q 010623 60 DADVIVVGAGV-AGAALANTLAKDGRRVHVIERD 92 (506)
Q Consensus 60 ~~dVvIVGgG~-aGl~~A~~La~~G~~v~vvE~~ 92 (506)
..+|+|||+|- +|..+|..|.++|.+|+++.|.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 47999999996 6999999999999999999986
No 429
>PRK10537 voltage-gated potassium channel; Provisional
Probab=91.73 E-value=0.98 Score=45.57 Aligned_cols=33 Identities=21% Similarity=0.190 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~ 92 (506)
+-+|+|+|.|..|-..+..|.++|.+|+++|++
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d 272 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPL 272 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECc
Confidence 358999999999999999999999999999976
No 430
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.72 E-value=0.28 Score=48.49 Aligned_cols=33 Identities=39% Similarity=0.435 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
..|.|||+|..|.+.|..|++.|++|++++|++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 479999999999999999999999999999964
No 431
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=91.72 E-value=0.22 Score=50.91 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~ 94 (506)
..|.|||.|-.|+.+|..|+++|++|+++|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 4699999999999999999999999999998753
No 432
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.65 E-value=0.24 Score=48.85 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
+|.|||+|..|.+.|..|++.|++|.++.|++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 58999999999999999999999999999864
No 433
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=91.64 E-value=0.29 Score=45.97 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=33.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~ 94 (506)
....++|+|||+.+..+|..++..|++|+|+|.++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 458999999999999999999999999999997754
No 434
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=91.58 E-value=0.34 Score=41.27 Aligned_cols=33 Identities=33% Similarity=0.533 Sum_probs=29.7
Q ss_pred CcEEEECC-CHHHHHHHHHHHHCCC--cEEEEecCC
Q 010623 61 ADVIVVGA-GVAGAALANTLAKDGR--RVHVIERDL 93 (506)
Q Consensus 61 ~dVvIVGg-G~aGl~~A~~La~~G~--~v~vvE~~~ 93 (506)
.+|.|||+ |..|.++|+.|...++ ++.|+|...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 37999999 9999999999999886 699999884
No 435
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.55 E-value=0.31 Score=43.19 Aligned_cols=32 Identities=31% Similarity=0.528 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623 62 DVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~ 93 (506)
.|+|||+|..|...|..|++.|+ +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999999 599999874
No 436
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=91.37 E-value=0.34 Score=47.11 Aligned_cols=36 Identities=31% Similarity=0.456 Sum_probs=34.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE 95 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~ 95 (506)
.+||+|+|-|+.=+.++..|+..|.+|+.+||++.-
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~Y 41 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYY 41 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCcc
Confidence 699999999999999999999999999999999753
No 437
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=91.36 E-value=0.28 Score=47.65 Aligned_cols=32 Identities=38% Similarity=0.518 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
.|.|||+|..|...|..|++.|++|+++|+++
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 59999999999999999999999999999875
No 438
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=91.35 E-value=0.31 Score=45.86 Aligned_cols=34 Identities=35% Similarity=0.490 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~ 93 (506)
+.+|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 4799999999999999999999998 899999874
No 439
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=91.31 E-value=0.35 Score=44.40 Aligned_cols=34 Identities=32% Similarity=0.544 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~ 93 (506)
...|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4799999999999999999999999 599999874
No 440
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=91.31 E-value=0.22 Score=50.89 Aligned_cols=33 Identities=33% Similarity=0.484 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~ 94 (506)
+|.|||.|..|+.+|..|++.|++|+++|+++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 589999999999999999999999999998753
No 441
>PRK08328 hypothetical protein; Provisional
Probab=91.31 E-value=0.32 Score=45.30 Aligned_cols=34 Identities=38% Similarity=0.542 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~ 93 (506)
+..|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4689999999999999999999998 788998774
No 442
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.18 E-value=0.25 Score=49.29 Aligned_cols=32 Identities=34% Similarity=0.382 Sum_probs=27.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623 62 DVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~ 93 (506)
.|+|+|+||.||.++..++..|. +|+++|+++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~ 203 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP 203 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 69999999999999999999996 666667764
No 443
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=91.15 E-value=0.28 Score=49.48 Aligned_cols=35 Identities=34% Similarity=0.374 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~ 94 (506)
.-.|+|+|.|+.|..+|..|+..|.+|+++|.++.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 45899999999999999999999999999998763
No 444
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.05 E-value=0.35 Score=47.30 Aligned_cols=33 Identities=33% Similarity=0.550 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
.+|.|||+|-.|.+.|..|++.|++|++++|+.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 579999999999999999999999999999875
No 445
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=90.99 E-value=0.35 Score=44.95 Aligned_cols=34 Identities=38% Similarity=0.626 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~ 93 (506)
+..|+|||+|..|...|..|++.|+ +++|+|.+.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 4799999999999999999999998 889998874
No 446
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=90.92 E-value=0.39 Score=40.93 Aligned_cols=32 Identities=34% Similarity=0.598 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623 62 DVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~ 93 (506)
.|+|||+|-.|...|..|++.|+ +++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 48999999999999999999999 799999874
No 447
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=90.82 E-value=0.97 Score=48.61 Aligned_cols=34 Identities=35% Similarity=0.616 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
+.+|+|+|.|..|-..|..|.++|++++++|+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~ 433 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDI 433 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCH
Confidence 4689999999999999999999999999999985
No 448
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=90.75 E-value=0.45 Score=46.71 Aligned_cols=35 Identities=14% Similarity=0.253 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDLS 94 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~~ 94 (506)
...|.|||+|-.|.+.|+.++..|+ +++|+|.++.
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 3689999999999999999999996 9999998764
No 449
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=90.73 E-value=1.1 Score=45.44 Aligned_cols=33 Identities=30% Similarity=0.529 Sum_probs=27.0
Q ss_pred EEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCC
Q 010623 63 VIVVGAGVAGAALANTLAKD--GRRVHVIERDLSE 95 (506)
Q Consensus 63 VvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~~~ 95 (506)
++|||+|++|+++|..|.+. +.+++++.+.+..
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~ 35 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKY 35 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCC
Confidence 58999999999999998885 4578877777543
No 450
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=90.63 E-value=0.34 Score=46.67 Aligned_cols=32 Identities=41% Similarity=0.603 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERD 92 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~ 92 (506)
..|+|+|+|-+|.++|..|++.|+ +++|++|.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 579999999999999999999998 79999987
No 451
>PRK08223 hypothetical protein; Validated
Probab=90.50 E-value=0.41 Score=45.75 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~ 93 (506)
+..|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4799999999999999999999998 899999874
No 452
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=90.46 E-value=0.35 Score=50.24 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~ 93 (506)
.-+|+|||||.+|+-+|..|++.|. +|+++++++
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4589999999999999999999998 899999864
No 453
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.46 E-value=0.43 Score=44.31 Aligned_cols=34 Identities=38% Similarity=0.591 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~ 93 (506)
+..|+|||.|-.|..+|..|++.|+ +++|+|.+.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 4789999999999999999999998 899999874
No 454
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=90.43 E-value=0.36 Score=50.51 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
..|.|||+|..|...|..|+++|++|+++|+++
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 369999999999999999999999999999975
No 455
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=90.43 E-value=0.4 Score=49.77 Aligned_cols=34 Identities=35% Similarity=0.455 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
...|+|+|+|++|+.++..+...|.+|+++|+++
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4799999999999999999999999999999874
No 456
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=90.38 E-value=0.34 Score=43.80 Aligned_cols=34 Identities=29% Similarity=0.492 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
.-.|.|||||..|...|.-.+..|++|.|+|++.
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence 4589999999999999999999999999999985
No 457
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=90.36 E-value=0.44 Score=43.20 Aligned_cols=34 Identities=32% Similarity=0.662 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~ 93 (506)
+..|+|||+|..|...|..|++.|+ +++++|.+.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 4799999999999999999999999 599999874
No 458
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=90.27 E-value=0.4 Score=47.21 Aligned_cols=32 Identities=44% Similarity=0.632 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
+|.|||+|..|...|..|++.|++|+++++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999874
No 459
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.26 E-value=0.33 Score=50.83 Aligned_cols=32 Identities=44% Similarity=0.637 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~ 92 (506)
-.|+|+|.|++|++++..|.+.|.+|++.|+.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 47999999999999999999999999999965
No 460
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=90.21 E-value=0.29 Score=46.49 Aligned_cols=34 Identities=29% Similarity=0.516 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
+-+|+|+|||.+|.-+|..+...|.+|+++|.+.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 4799999999999999999999999999999984
No 461
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=90.21 E-value=0.37 Score=46.39 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
+|.|||.|..|.+.|..|+++|++|.++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999999999999999999999999864
No 462
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=90.08 E-value=0.45 Score=44.45 Aligned_cols=35 Identities=31% Similarity=0.391 Sum_probs=30.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-----------CcEEEEecCC
Q 010623 59 FDADVIVVGAGVAGAALANTLAKDG-----------RRVHVIERDL 93 (506)
Q Consensus 59 ~~~dVvIVGgG~aGl~~A~~La~~G-----------~~v~vvE~~~ 93 (506)
.+.+|+|||+|-.|..++..|++.| .+++|+|.+.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 3589999999999999999999974 3889999874
No 463
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=90.02 E-value=0.44 Score=46.20 Aligned_cols=34 Identities=38% Similarity=0.497 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
..+|+|+|.|.+|..+|..|++.|.+|+++++++
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4689999999999999999999999999999984
No 464
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=90.01 E-value=0.34 Score=50.64 Aligned_cols=34 Identities=32% Similarity=0.500 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~ 94 (506)
..|.|||+|..|...|..|++.|++|+++|++++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999999854
No 465
>PRK06223 malate dehydrogenase; Reviewed
Probab=89.99 E-value=0.47 Score=46.37 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDLS 94 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~~ 94 (506)
.+|.|||+|..|.+.|..++..|+ +++++|.+++
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 479999999999999999999876 9999999643
No 466
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=89.97 E-value=0.38 Score=41.64 Aligned_cols=33 Identities=39% Similarity=0.536 Sum_probs=27.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
-.++|+|=|-.|-.+|..|+..|.+|+|.|.+|
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 479999999999999999999999999999986
No 467
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=89.93 E-value=0.91 Score=47.63 Aligned_cols=36 Identities=42% Similarity=0.605 Sum_probs=33.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP 96 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~ 96 (506)
+||+|||||++||++|..|+++|++|+|+||++.+.
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~G 36 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPG 36 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCC
Confidence 699999999999999999999999999999997643
No 468
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=89.92 E-value=0.48 Score=43.93 Aligned_cols=33 Identities=30% Similarity=0.558 Sum_probs=30.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCc---EEEEecCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRR---VHVIERDL 93 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~---v~vvE~~~ 93 (506)
..|+|+|+|-+|...|..|.+.|.+ +.|++|..
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 5899999999999999999999985 99999973
No 469
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=89.89 E-value=0.5 Score=42.82 Aligned_cols=34 Identities=21% Similarity=0.427 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~ 93 (506)
+..|+|||+|..|...|..|++.|+ +++++|.+.
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 4799999999999999999999999 689999874
No 470
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=89.80 E-value=0.42 Score=48.49 Aligned_cols=35 Identities=37% Similarity=0.366 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~ 94 (506)
.-.|+|+|.|..|..+|..|+..|.+|+++|+++.
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 45799999999999999999999999999998753
No 471
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=89.73 E-value=0.43 Score=48.20 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=28.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~ 94 (506)
+|.|||.|-.|+.+|..++. |++|+++|+++.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 58999999999999998885 999999999853
No 472
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.65 E-value=0.41 Score=49.55 Aligned_cols=32 Identities=34% Similarity=0.387 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
.|+|+|+|.+|+++|..|++.|.+|++.|+..
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 68999999999999999999999999999764
No 473
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=89.57 E-value=0.43 Score=49.37 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=29.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCcEEEEecCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKD--GRRVHVIERDL 93 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~--G~~v~vvE~~~ 93 (506)
++|.|||.|-.|+.+|..|+++ |++|+.+|.++
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 4699999999999999999988 47899999875
No 474
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.49 E-value=0.61 Score=45.58 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGR--RVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~ 93 (506)
+..|.|||+|-+|.++|+.|+..|+ .+.|+|.+.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 4689999999999999999999886 699999874
No 475
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=89.48 E-value=0.5 Score=46.12 Aligned_cols=33 Identities=27% Similarity=0.567 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC--cEEEEecCCC
Q 010623 62 DVIVVGAGVAGAALANTLAKDGR--RVHVIERDLS 94 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~~ 94 (506)
.|.|||+|-+|.++|+.|+..|+ +++++|+++.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 58999999999999999999994 7999999753
No 476
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.37 E-value=0.51 Score=48.82 Aligned_cols=34 Identities=26% Similarity=0.507 Sum_probs=31.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~ 94 (506)
..|+|+|.|.+|+++|..|+++|.+|++.|..+.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4799999999999999999999999999997653
No 477
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.36 E-value=0.45 Score=49.40 Aligned_cols=33 Identities=33% Similarity=0.487 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
..|+|+|.|.+|+++|..|.+.|++|++.|+++
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 379999999999999999999999999999875
No 478
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=89.27 E-value=0.85 Score=45.11 Aligned_cols=42 Identities=21% Similarity=0.172 Sum_probs=31.0
Q ss_pred CCEEEEec-eEEEEEeeCCeEEEEEEEeCCccEEEEEcCeEEeecCCc
Q 010623 176 PNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCF 222 (506)
Q Consensus 176 ~~v~i~~~-~v~~~~~~~~~v~~v~v~~~~G~~~~i~a~~vV~AdG~~ 222 (506)
+|+.++-+ .|.++....++ +.+...||.+ ++.|+||.|.|.-
T Consensus 406 ~GV~V~pna~v~sv~~~~~n---l~lkL~dG~~--l~tD~vVvavG~e 448 (659)
T KOG1346|consen 406 GGVDVRPNAKVESVRKCCKN---LVLKLSDGSE--LRTDLVVVAVGEE 448 (659)
T ss_pred cCceeccchhhhhhhhhccc---eEEEecCCCe--eeeeeEEEEecCC
Confidence 47877766 47777666553 5577789974 6699999999954
No 479
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=89.27 E-value=0.67 Score=45.37 Aligned_cols=34 Identities=26% Similarity=0.525 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGR--RVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~--~v~vvE~~~ 93 (506)
..+|.|||+|-+|.++|+.|+..|+ .+.|+|.+.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 4699999999999999999999998 799999864
No 480
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=89.27 E-value=0.48 Score=46.12 Aligned_cols=31 Identities=32% Similarity=0.415 Sum_probs=28.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623 63 VIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (506)
Q Consensus 63 VvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~ 93 (506)
|.|||+|-.|..+|..|+.+|+ +|+++|.++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999999887 999999984
No 481
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=89.22 E-value=0.7 Score=44.50 Aligned_cols=105 Identities=21% Similarity=0.201 Sum_probs=71.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEEEECCc
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 139 (506)
+-.-+|||||-++|-||-+|+-.|++|+|.=|+-- |+ |..
T Consensus 198 PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~-----------------Lr--GFD--------------------- 237 (503)
T KOG4716|consen 198 PGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSIL-----------------LR--GFD--------------------- 237 (503)
T ss_pred CCceEEEccceeeeehhhhHhhcCCCcEEEEEEee-----------------cc--ccc---------------------
Confidence 35689999999999999999999999999877620 00 111
Q ss_pred eeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEe-CCccEEEEEcCeEEe
Q 010623 140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIV 217 (506)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~-~~G~~~~i~a~~vV~ 217 (506)
.++.+.+.+++.+. |+.+.... .+.+++.+++...|.... .+++..+-..|-|+.
T Consensus 238 ----------------------qdmae~v~~~m~~~-Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~ 294 (503)
T KOG4716|consen 238 ----------------------QDMAELVAEHMEER-GIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLW 294 (503)
T ss_pred ----------------------HHHHHHHHHHHHHh-CCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhh
Confidence 13445566677777 77777775 677776655433344433 233333334799999
Q ss_pred ecCCcccchh
Q 010623 218 CDGCFSNLRR 227 (506)
Q Consensus 218 AdG~~S~vR~ 227 (506)
|-|.-+.+++
T Consensus 295 AiGR~~~~~~ 304 (503)
T KOG4716|consen 295 AIGRKALTDD 304 (503)
T ss_pred hhccccchhh
Confidence 9998887765
No 482
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=89.09 E-value=0.52 Score=43.27 Aligned_cols=34 Identities=38% Similarity=0.543 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~ 93 (506)
+..|+|||.|-+|..++-+|+|.|+ +.+|+|.+.
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~ 64 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDD 64 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccc
Confidence 3799999999999999999999998 899999985
No 483
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=89.01 E-value=0.45 Score=49.90 Aligned_cols=34 Identities=35% Similarity=0.539 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~ 94 (506)
-.|.|||+|..|...|..|++.|++|+++|++++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3599999999999999999999999999999864
No 484
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.01 E-value=0.46 Score=49.19 Aligned_cols=33 Identities=39% Similarity=0.640 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~ 94 (506)
+|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 699999999999999999999999999999753
No 485
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=88.98 E-value=0.55 Score=46.87 Aligned_cols=34 Identities=32% Similarity=0.642 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC-CcEEEEecCCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDG-RRVHVIERDLS 94 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G-~~v~vvE~~~~ 94 (506)
.+|+|+|+|-.|..+|..|+++| .+|++.+|...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~ 36 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE 36 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence 47999999999999999999999 89999999853
No 486
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=88.81 E-value=0.61 Score=43.03 Aligned_cols=32 Identities=41% Similarity=0.632 Sum_probs=29.2
Q ss_pred cEEEEC-CCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 62 DVIVVG-AGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 62 dVvIVG-gG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
+|.||| +|..|.++|..|++.|++|+++.|++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 589997 69999999999999999999998764
No 487
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=88.76 E-value=2.2 Score=42.34 Aligned_cols=134 Identities=16% Similarity=0.163 Sum_probs=74.5
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHH--HCCCcEEEEecCCCCCCcccccccccchHHHHHHhCchhHHhhcccceecceEE
Q 010623 57 CPFDADVIVVGAGVAGAALANTLA--KDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYAL 134 (506)
Q Consensus 57 ~~~~~dVvIVGgG~aGl~~A~~La--~~G~~v~vvE~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 134 (506)
.+.+...+|||||-+-.+++.... ..+.+|.++-..++.+. +.|.-.+.|.-.|=.. ....+.+
T Consensus 175 ~p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPY------mRPPLSKELW~~~dpn--------~~k~lrf 240 (659)
T KOG1346|consen 175 LPKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPY------MRPPLSKELWWYGDPN--------SAKKLRF 240 (659)
T ss_pred CcccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcc------cCCCcchhceecCCCC--------hhhheee
Confidence 346789999999988777765554 34678888876654332 1111111111111000 1111111
Q ss_pred -EECCceeeeecCCcCCCCCcccccccchHHHHHHHHHHHcCCCEEEEece-EEEEEeeCCeEEEEEEEeCCccEEEEEc
Q 010623 135 -FKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYA 212 (506)
Q Consensus 135 -~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~i~~~~-v~~~~~~~~~v~~v~v~~~~G~~~~i~a 212 (506)
-.+|+...+.|. +.+..++..+|-.+ .+||+.+..++ |+.+..++..|+ .+||.+ |.+
T Consensus 241 kqwsGkeRsiffe-------pd~FfvspeDLp~~------~nGGvAvl~G~kvvkid~~d~~V~-----LnDG~~--I~Y 300 (659)
T KOG1346|consen 241 KQWSGKERSIFFE-------PDGFFVSPEDLPKA------VNGGVAVLRGRKVVKIDEEDKKVI-----LNDGTT--IGY 300 (659)
T ss_pred cccCCccceeEec-------CCcceeChhHCccc------ccCceEEEeccceEEeecccCeEE-----ecCCcE--eeh
Confidence 012333233322 22334444444322 34789998885 999988877533 678874 669
Q ss_pred CeEEeecCCccc
Q 010623 213 PLTIVCDGCFSN 224 (506)
Q Consensus 213 ~~vV~AdG~~S~ 224 (506)
|-.+.|+|..-.
T Consensus 301 dkcLIATG~~Pk 312 (659)
T KOG1346|consen 301 DKCLIATGVRPK 312 (659)
T ss_pred hheeeecCcCcc
Confidence 999999998754
No 488
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=88.76 E-value=0.67 Score=46.44 Aligned_cols=34 Identities=35% Similarity=0.597 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~ 93 (506)
+..|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 5789999999999999999999998 899999874
No 489
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=88.70 E-value=0.72 Score=41.64 Aligned_cols=32 Identities=38% Similarity=0.635 Sum_probs=29.5
Q ss_pred CcEEEECC-CHHHHHHHHHHHHCCCcEEEEecC
Q 010623 61 ADVIVVGA-GVAGAALANTLAKDGRRVHVIERD 92 (506)
Q Consensus 61 ~dVvIVGg-G~aGl~~A~~La~~G~~v~vvE~~ 92 (506)
..++|+|| |..|..+|..|++.|.+|+++.|+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 57999997 999999999999999999999876
No 490
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=88.70 E-value=0.5 Score=51.80 Aligned_cols=34 Identities=26% Similarity=0.400 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~ 94 (506)
-.|.|||||..|...|..++..|++|+++|.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998853
No 491
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=88.52 E-value=0.94 Score=41.13 Aligned_cols=32 Identities=31% Similarity=0.476 Sum_probs=30.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~ 92 (506)
..|+|+|.|-.|..+|..|.+.|.+|++.|++
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 47999999999999999999999999999876
No 492
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=88.50 E-value=0.5 Score=48.13 Aligned_cols=36 Identities=33% Similarity=0.405 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE 95 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~~ 95 (506)
...|+|+|-|.+|+++|..|.+.|.+|++.|.++.+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 368999999999999999999999999999987654
No 493
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=88.47 E-value=0.57 Score=45.19 Aligned_cols=34 Identities=35% Similarity=0.522 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
.-.|+|+|.|..|.++|..|+..|.+|++++|.+
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3589999999999999999999999999999874
No 494
>PLN02494 adenosylhomocysteinase
Probab=88.45 E-value=0.64 Score=47.54 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~ 94 (506)
.-.|+|+|.|..|..+|..|+..|.+|+++|+++.
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~ 288 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI 288 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 46899999999999999999999999999998863
No 495
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=88.45 E-value=0.54 Score=51.48 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=31.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~~ 94 (506)
-.|.|||||..|...|..++.+|++|+++|.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999999854
No 496
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=88.39 E-value=0.75 Score=40.21 Aligned_cols=33 Identities=36% Similarity=0.533 Sum_probs=28.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
.+|-|||-|-.|...|..|.++|++|.++++.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 478999999999999999999999999999875
No 497
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=88.38 E-value=0.68 Score=46.18 Aligned_cols=34 Identities=38% Similarity=0.534 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (506)
Q Consensus 60 ~~dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~ 93 (506)
+..|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4799999999999999999999998 899999874
No 498
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=88.28 E-value=0.72 Score=44.59 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=29.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCc-EEEEecCC
Q 010623 61 ADVIVVGAGVAGAALANTLAKDGRR-VHVIERDL 93 (506)
Q Consensus 61 ~dVvIVGgG~aGl~~A~~La~~G~~-v~vvE~~~ 93 (506)
-.|+|+|||-+|.++|..|++.|.+ |+|+.|+.
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 4799999999999999999999996 99999863
No 499
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=88.17 E-value=0.59 Score=45.54 Aligned_cols=32 Identities=34% Similarity=0.643 Sum_probs=29.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Q 010623 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~~v~vvE~~~ 93 (506)
.|.|+|+|-.|...|+.|++.|.+|+++=|.+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 68999999999999999999998888887764
No 500
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=88.07 E-value=0.8 Score=42.60 Aligned_cols=32 Identities=44% Similarity=0.643 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Q 010623 62 DVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (506)
Q Consensus 62 dVvIVGgG~aGl~~A~~La~~G~-~v~vvE~~~ 93 (506)
.|+|||+|-.|...+..|++.|+ +++|+|.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999998 889999874
Done!