Query 010627
Match_columns 505
No_of_seqs 191 out of 1443
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 02:43:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010627.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010627hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02461 Probable pyruvate kin 100.0 2E-138 5E-143 1106.2 59.1 496 10-505 16-511 (511)
2 PTZ00066 pyruvate kinase; Prov 100.0 2E-135 5E-140 1081.9 57.6 472 13-505 36-513 (513)
3 PLN02762 pyruvate kinase compl 100.0 4E-135 8E-140 1081.1 57.0 469 14-505 24-509 (509)
4 PLN02765 pyruvate kinase 100.0 1E-133 3E-138 1069.9 57.8 487 15-505 28-525 (526)
5 PRK09206 pyruvate kinase; Prov 100.0 3E-132 6E-137 1054.3 56.6 465 14-504 1-470 (470)
6 PRK06247 pyruvate kinase; Prov 100.0 2E-131 4E-136 1047.0 56.2 466 11-505 1-471 (476)
7 COG0469 PykF Pyruvate kinase [ 100.0 2E-131 4E-136 1041.4 53.8 469 12-504 2-477 (477)
8 cd00288 Pyruvate_Kinase Pyruva 100.0 1E-129 3E-134 1039.6 57.1 474 14-504 1-480 (480)
9 PRK06354 pyruvate kinase; Prov 100.0 2E-129 5E-134 1058.8 56.7 467 13-504 6-478 (590)
10 PRK05826 pyruvate kinase; Prov 100.0 1E-126 2E-131 1014.0 54.7 454 14-493 3-458 (465)
11 PLN02623 pyruvate kinase 100.0 2E-123 3E-128 999.2 56.0 465 12-504 107-579 (581)
12 PTZ00300 pyruvate kinase; Prov 100.0 9E-122 2E-126 970.6 53.6 446 41-504 1-453 (454)
13 TIGR01064 pyruv_kin pyruvate k 100.0 3E-120 6E-125 971.5 54.6 465 15-501 1-473 (473)
14 KOG2323 Pyruvate kinase [Carbo 100.0 2E-119 3E-124 945.0 47.3 485 4-504 7-501 (501)
15 PF00224 PK: Pyruvate kinase, 100.0 6E-107 1E-111 840.4 32.8 344 14-360 1-348 (348)
16 PRK06739 pyruvate kinase; Vali 100.0 3E-105 7E-110 821.0 39.5 331 16-355 2-333 (352)
17 PRK14725 pyruvate kinase; Prov 100.0 1.5E-92 3.3E-97 759.2 40.7 332 12-353 136-596 (608)
18 PRK08187 pyruvate kinase; Vali 100.0 3E-91 6.6E-96 744.6 39.7 332 12-353 130-479 (493)
19 PF02887 PK_C: Pyruvate kinase 99.9 4.2E-27 9.1E-32 208.0 13.8 112 374-503 1-117 (117)
20 TIGR03239 GarL 2-dehydro-3-deo 99.7 3.5E-16 7.7E-21 155.7 11.7 133 184-331 68-234 (249)
21 PRK10558 alpha-dehydro-beta-de 99.6 5.2E-16 1.1E-20 155.1 10.5 133 184-331 75-241 (256)
22 PRK10128 2-keto-3-deoxy-L-rham 99.6 2.7E-15 6E-20 150.5 11.1 131 186-331 76-241 (267)
23 COG3836 HpcH 2,4-dihydroxyhept 99.6 1.6E-14 3.5E-19 139.5 11.2 135 182-331 71-240 (255)
24 TIGR02311 HpaI 2,4-dihydroxyhe 99.5 2.1E-14 4.4E-19 143.2 10.5 131 186-331 70-235 (249)
25 PF03328 HpcH_HpaI: HpcH/HpaI 99.5 5.6E-14 1.2E-18 137.3 6.0 101 189-291 74-189 (221)
26 TIGR01418 PEP_synth phosphoeno 99.3 1.7E-11 3.8E-16 139.8 12.5 150 183-352 609-782 (782)
27 PRK06464 phosphoenolpyruvate s 99.3 2.1E-11 4.5E-16 139.2 12.3 150 184-353 617-790 (795)
28 TIGR01588 citE citrate lyase, 99.2 4.1E-11 8.9E-16 122.0 11.4 132 188-326 73-220 (288)
29 TIGR01417 PTS_I_fam phosphoeno 99.1 1.5E-10 3.3E-15 127.7 10.9 135 181-327 364-525 (565)
30 PRK11177 phosphoenolpyruvate-p 99.1 5.2E-10 1.1E-14 123.5 10.0 135 181-327 365-526 (575)
31 COG2301 CitE Citrate lyase bet 98.7 5.5E-08 1.2E-12 98.2 8.5 133 187-326 67-212 (283)
32 cd00727 malate_synt_A Malate s 98.6 1.7E-06 3.7E-11 93.8 16.9 147 176-339 162-350 (511)
33 TIGR01344 malate_syn_A malate 98.5 4E-06 8.8E-11 90.8 17.1 141 176-326 163-345 (511)
34 PRK09255 malate synthase; Vali 98.4 9.3E-06 2E-10 88.5 17.6 146 176-338 183-370 (531)
35 PF02896 PEP-utilizers_C: PEP- 98.4 1.2E-06 2.6E-11 89.5 8.9 134 183-328 119-279 (293)
36 cd00480 malate_synt Malate syn 98.3 3E-05 6.5E-10 84.7 18.4 126 201-326 184-344 (511)
37 PLN02626 malate synthase 98.1 6.3E-05 1.4E-09 81.8 15.6 122 203-326 213-371 (551)
38 PRK11061 fused phosphoenolpyru 97.3 0.00026 5.7E-09 81.2 5.9 146 183-349 532-705 (748)
39 COG1080 PtsA Phosphoenolpyruva 97.3 0.00093 2E-08 73.1 9.1 134 182-327 367-527 (574)
40 TIGR01828 pyru_phos_dikin pyru 97.1 0.0027 5.8E-08 73.8 11.0 136 182-328 669-851 (856)
41 PRK08649 inosine 5-monophospha 96.8 0.011 2.4E-07 62.5 11.8 116 195-326 148-284 (368)
42 PRK09279 pyruvate phosphate di 96.3 0.011 2.4E-07 68.8 8.6 136 181-327 674-856 (879)
43 TIGR02751 PEPCase_arch phospho 96.2 0.023 5E-07 62.0 9.4 90 201-290 122-246 (506)
44 TIGR01304 IMP_DH_rel_2 IMP deh 95.9 0.043 9.4E-07 58.1 10.0 114 195-327 149-284 (369)
45 cd00381 IMPDH IMPDH: The catal 95.9 0.1 2.2E-06 54.3 12.5 124 187-326 93-225 (325)
46 PRK13655 phosphoenolpyruvate c 95.3 0.058 1.3E-06 58.8 8.5 93 199-291 119-239 (494)
47 PF00478 IMPDH: IMP dehydrogen 94.9 0.29 6.2E-06 51.5 12.0 124 187-326 107-239 (352)
48 COG3605 PtsP Signal transducti 94.8 0.085 1.8E-06 58.1 7.7 153 183-352 540-719 (756)
49 PRK00009 phosphoenolpyruvate c 94.4 0.19 4.2E-06 58.9 10.1 92 200-291 485-604 (911)
50 PTZ00314 inosine-5'-monophosph 93.8 0.65 1.4E-05 51.2 12.3 124 187-327 240-373 (495)
51 cd00958 DhnA Class I fructose- 93.5 2 4.3E-05 42.2 14.0 77 186-267 141-223 (235)
52 PLN02274 inosine-5'-monophosph 93.4 0.79 1.7E-05 50.7 11.9 125 186-327 246-380 (505)
53 cd07944 DRE_TIM_HOA_like 4-hyd 93.3 6.3 0.00014 39.8 17.5 195 172-400 9-218 (266)
54 TIGR01302 IMP_dehydrog inosine 93.1 1.3 2.9E-05 48.1 13.1 125 186-327 222-356 (450)
55 TIGR03151 enACPred_II putative 93.0 1.2 2.7E-05 45.9 12.2 114 190-328 77-191 (307)
56 PRK13125 trpA tryptophan synth 93.0 2.3 5E-05 42.3 13.7 113 195-327 95-214 (244)
57 cd03174 DRE_TIM_metallolyase D 92.7 8.2 0.00018 38.1 17.3 195 184-400 15-225 (265)
58 cd07939 DRE_TIM_NifV Streptomy 92.7 12 0.00025 37.5 18.4 192 184-400 16-217 (259)
59 PTZ00398 phosphoenolpyruvate c 92.5 0.51 1.1E-05 55.9 9.4 89 203-291 547-661 (974)
60 TIGR01305 GMP_reduct_1 guanosi 92.5 1.9 4E-05 45.2 12.4 126 186-327 105-241 (343)
61 COG0574 PpsA Phosphoenolpyruva 92.3 0.63 1.4E-05 53.8 9.8 112 204-327 597-723 (740)
62 PF01959 DHQS: 3-dehydroquinat 92.2 1.1 2.5E-05 46.9 10.6 130 190-349 15-169 (354)
63 PRK06843 inosine 5-monophospha 92.0 1.9 4.1E-05 46.4 12.1 124 187-327 152-285 (404)
64 cd04730 NPD_like 2-Nitropropan 91.8 2.4 5.2E-05 41.4 12.0 113 191-327 71-185 (236)
65 PRK02290 3-dehydroquinate synt 91.8 3.3 7.2E-05 43.3 13.3 132 187-349 13-160 (344)
66 TIGR01949 AroFGH_arch predicte 91.8 4.6 9.9E-05 40.5 14.2 67 195-264 163-233 (258)
67 PRK07807 inosine 5-monophospha 91.7 1.7 3.7E-05 47.7 11.8 127 185-327 224-359 (479)
68 PRK08227 autoinducer 2 aldolas 91.6 5 0.00011 40.7 14.2 157 236-418 41-198 (264)
69 PRK05096 guanosine 5'-monophos 91.4 2.3 4.9E-05 44.6 11.6 126 186-327 106-242 (346)
70 TIGR02090 LEU1_arch isopropylm 91.2 15 0.00032 38.9 17.9 165 170-349 9-182 (363)
71 PRK13397 3-deoxy-7-phosphohept 90.9 6.5 0.00014 39.6 14.0 90 215-328 67-157 (250)
72 PRK01130 N-acetylmannosamine-6 90.9 3.9 8.4E-05 39.8 12.3 133 190-345 78-217 (221)
73 PRK11858 aksA trans-homoaconit 90.9 22 0.00048 37.8 18.9 157 184-350 22-187 (378)
74 cd00429 RPE Ribulose-5-phospha 90.9 3.2 6.9E-05 39.5 11.5 132 195-343 74-210 (211)
75 PLN03034 phosphoglycerate kina 90.8 1.4 3E-05 48.2 9.7 330 1-415 99-448 (481)
76 cd04740 DHOD_1B_like Dihydroor 90.7 6.4 0.00014 40.1 14.2 128 187-329 101-262 (296)
77 cd07945 DRE_TIM_CMS Leptospira 90.7 9.5 0.00021 38.9 15.3 206 169-400 5-226 (280)
78 cd04726 KGPDC_HPS 3-Keto-L-gul 90.7 5.6 0.00012 37.8 13.0 128 195-341 71-200 (202)
79 TIGR01361 DAHP_synth_Bsub phos 90.6 3 6.6E-05 42.1 11.5 91 213-327 75-166 (260)
80 cd00958 DhnA Class I fructose- 90.5 6.2 0.00013 38.7 13.5 130 183-328 16-164 (235)
81 PRK00915 2-isopropylmalate syn 90.1 21 0.00046 39.6 18.6 157 184-350 22-191 (513)
82 PRK07107 inosine 5-monophospha 89.9 2.7 5.9E-05 46.5 11.3 118 190-327 244-381 (502)
83 TIGR01306 GMP_reduct_2 guanosi 89.9 2.6 5.7E-05 43.9 10.6 126 185-327 91-227 (321)
84 PRK13398 3-deoxy-7-phosphohept 89.9 10 0.00022 38.5 14.7 106 213-342 77-185 (266)
85 PRK02048 4-hydroxy-3-methylbut 89.9 5.9 0.00013 44.4 13.7 152 187-347 41-223 (611)
86 PLN02334 ribulose-phosphate 3- 89.8 10 0.00022 37.3 14.3 139 195-350 82-225 (229)
87 cd04722 TIM_phosphate_binding 89.3 4.2 9.1E-05 37.3 10.7 115 195-327 78-199 (200)
88 PRK05581 ribulose-phosphate 3- 89.1 10 0.00023 36.4 13.7 136 195-346 78-217 (220)
89 PRK05458 guanosine 5'-monophos 89.1 6.4 0.00014 41.1 12.8 126 186-327 95-230 (326)
90 PF00682 HMGL-like: HMGL-like 89.1 18 0.00039 35.4 15.5 194 185-400 11-216 (237)
91 PRK07226 fructose-bisphosphate 89.0 14 0.0003 37.3 15.0 98 183-291 34-144 (267)
92 PTZ00005 phosphoglycerate kina 88.9 2.7 5.8E-05 45.3 10.1 322 1-411 24-385 (417)
93 PF14010 PEPcase_2: Phosphoeno 88.9 0.85 1.8E-05 49.8 6.3 90 200-289 119-243 (491)
94 TIGR02660 nifV_homocitr homoci 88.9 20 0.00044 37.9 16.6 156 184-350 19-184 (365)
95 PRK07565 dihydroorotate dehydr 88.7 5.6 0.00012 41.5 12.2 146 189-354 115-290 (334)
96 CHL00200 trpA tryptophan synth 88.6 7.2 0.00016 39.5 12.5 117 195-327 113-231 (263)
97 TIGR01163 rpe ribulose-phospha 88.3 7.4 0.00016 37.1 11.9 131 195-342 73-208 (210)
98 cd04729 NanE N-acetylmannosami 88.2 5.1 0.00011 38.9 10.9 118 190-327 82-206 (219)
99 PF00311 PEPcase: Phosphoenolp 88.0 1.5 3.2E-05 51.1 7.9 90 202-291 364-481 (794)
100 PRK13307 bifunctional formalde 88.0 6.4 0.00014 42.2 12.2 131 195-347 244-378 (391)
101 cd02810 DHOD_DHPD_FMN Dihydroo 87.9 7 0.00015 39.5 12.1 127 188-327 111-272 (289)
102 PTZ00170 D-ribulose-5-phosphat 87.9 4.5 9.8E-05 39.9 10.3 136 195-349 82-223 (228)
103 PRK12595 bifunctional 3-deoxy- 87.8 9.6 0.00021 40.4 13.2 90 214-327 169-259 (360)
104 PRK13813 orotidine 5'-phosphat 87.4 1.8 3.9E-05 42.0 7.1 132 195-349 74-214 (215)
105 PRK15452 putative protease; Pr 87.2 3.5 7.7E-05 44.9 9.9 92 187-295 10-119 (443)
106 TIGR00973 leuA_bact 2-isopropy 87.2 20 0.00044 39.6 15.9 168 170-350 10-188 (494)
107 cd02940 DHPD_FMN Dihydropyrimi 87.0 8.3 0.00018 39.5 12.0 127 188-329 113-283 (299)
108 PRK09722 allulose-6-phosphate 87.0 18 0.0004 35.9 14.0 140 195-351 76-223 (229)
109 PF01791 DeoC: DeoC/LacD famil 86.9 4.8 0.0001 39.7 9.9 153 183-351 13-189 (236)
110 PRK05567 inosine 5'-monophosph 86.5 8.1 0.00018 42.5 12.3 122 190-327 230-360 (486)
111 PRK08318 dihydropyrimidine deh 86.4 8.5 0.00018 41.4 12.3 127 188-329 113-284 (420)
112 TIGR00126 deoC deoxyribose-pho 86.4 9.5 0.00021 37.4 11.5 147 182-348 12-173 (211)
113 PRK13962 bifunctional phosphog 86.3 6.1 0.00013 45.0 11.4 279 1-357 20-318 (645)
114 PRK09389 (R)-citramalate synth 86.0 48 0.001 36.6 18.0 154 185-348 21-183 (488)
115 PLN02591 tryptophan synthase 86.0 6.2 0.00014 39.7 10.2 116 195-327 100-218 (250)
116 COG2352 Ppc Phosphoenolpyruvat 85.8 1.8 3.8E-05 49.9 6.8 85 205-289 489-599 (910)
117 PRK07695 transcriptional regul 85.7 12 0.00026 35.8 11.8 128 195-348 67-198 (201)
118 PRK08883 ribulose-phosphate 3- 85.6 19 0.00041 35.4 13.2 133 195-347 75-215 (220)
119 cd00945 Aldolase_Class_I Class 85.5 22 0.00047 33.0 13.3 125 186-327 11-149 (201)
120 PRK08745 ribulose-phosphate 3- 85.5 22 0.00047 35.2 13.6 135 195-349 79-221 (223)
121 PRK15447 putative protease; Pr 85.5 6.6 0.00014 40.4 10.4 118 188-331 15-142 (301)
122 PF04551 GcpE: GcpE protein; 85.2 2.6 5.7E-05 44.3 7.2 151 189-347 33-197 (359)
123 PRK05692 hydroxymethylglutaryl 85.0 36 0.00078 34.9 15.4 205 170-400 13-234 (287)
124 PRK00286 xseA exodeoxyribonucl 84.9 16 0.00034 39.5 13.5 141 123-292 63-230 (438)
125 COG1465 Predicted alternative 84.4 17 0.00038 37.3 12.3 132 192-352 19-194 (376)
126 cd04732 HisA HisA. Phosphorib 84.0 14 0.00031 35.9 11.7 128 190-337 85-229 (234)
127 cd07948 DRE_TIM_HCS Saccharomy 83.9 51 0.0011 33.3 19.1 204 168-400 7-219 (262)
128 PRK00694 4-hydroxy-3-methylbut 83.6 4.7 0.0001 44.9 8.6 154 187-352 45-229 (606)
129 COG0826 Collagenase and relate 83.2 14 0.00031 38.9 11.8 118 187-331 13-148 (347)
130 PRK07259 dihydroorotate dehydr 83.1 14 0.00031 37.7 11.6 128 187-329 103-265 (301)
131 PLN02746 hydroxymethylglutaryl 83.0 27 0.00059 36.8 13.8 204 169-400 54-276 (347)
132 PRK00043 thiE thiamine-phospha 82.9 22 0.00048 33.8 12.3 129 195-350 75-211 (212)
133 PLN02925 4-hydroxy-3-methylbut 82.9 22 0.00049 40.7 13.7 153 187-351 110-293 (733)
134 cd00331 IGPS Indole-3-glycerol 82.6 19 0.00041 34.8 11.8 126 192-341 86-215 (217)
135 PRK06852 aldolase; Validated 82.5 29 0.00064 36.0 13.5 110 304-418 112-236 (304)
136 TIGR00977 LeuA_rel 2-isopropyl 82.5 30 0.00065 38.6 14.6 172 170-351 10-197 (526)
137 PRK08195 4-hyroxy-2-oxovalerat 82.5 55 0.0012 34.3 15.9 148 185-350 22-186 (337)
138 PRK08673 3-deoxy-7-phosphohept 82.2 26 0.00056 36.8 13.2 106 213-342 143-251 (335)
139 PRK13396 3-deoxy-7-phosphohept 82.0 24 0.00053 37.3 12.9 101 215-339 153-257 (352)
140 TIGR01182 eda Entner-Doudoroff 81.8 6.7 0.00014 38.3 8.2 38 275-326 90-127 (204)
141 PLN02321 2-isopropylmalate syn 81.7 60 0.0013 37.1 16.7 159 185-350 105-282 (632)
142 TIGR00262 trpA tryptophan synt 81.6 17 0.00037 36.5 11.4 116 195-327 109-227 (256)
143 cd00959 DeoC 2-deoxyribose-5-p 81.5 14 0.0003 35.6 10.3 146 183-348 12-172 (203)
144 PRK04302 triosephosphate isome 81.5 35 0.00075 33.4 13.2 132 195-343 79-218 (223)
145 cd07941 DRE_TIM_LeuA3 Desulfob 81.1 66 0.0014 32.5 17.9 170 170-349 7-192 (273)
146 PF03060 NMO: Nitronate monoox 81.0 16 0.00034 38.1 11.1 113 191-327 104-219 (330)
147 PRK00507 deoxyribose-phosphate 80.9 24 0.00053 34.8 11.9 150 183-347 17-176 (221)
148 KOG2550 IMP dehydrogenase/GMP 80.7 7.6 0.00016 41.6 8.5 126 186-327 249-383 (503)
149 PF00478 IMPDH: IMP dehydrogen 80.3 3.5 7.6E-05 43.5 6.0 52 15-66 95-146 (352)
150 TIGR00612 ispG_gcpE 1-hydroxy- 80.1 12 0.00025 39.2 9.6 144 189-347 36-188 (346)
151 PRK06015 keto-hydroxyglutarate 79.8 4.9 0.00011 39.1 6.4 103 207-326 9-123 (201)
152 TIGR03128 RuMP_HxlA 3-hexulose 79.8 38 0.00083 32.2 12.7 136 192-346 68-205 (206)
153 PRK07028 bifunctional hexulose 79.7 30 0.00066 37.3 13.2 137 192-348 73-211 (430)
154 TIGR01303 IMP_DH_rel_1 IMP deh 79.7 19 0.00042 39.6 11.8 123 186-327 223-357 (475)
155 PRK05718 keto-hydroxyglutarate 79.5 6.4 0.00014 38.6 7.2 107 205-326 18-134 (212)
156 TIGR01949 AroFGH_arch predicte 79.3 28 0.00061 34.8 12.0 133 183-327 31-176 (258)
157 PRK06552 keto-hydroxyglutarate 78.6 16 0.00036 35.7 9.8 105 205-326 16-135 (213)
158 PF00290 Trp_syntA: Tryptophan 78.5 20 0.00043 36.3 10.6 116 195-327 109-226 (259)
159 PRK06512 thiamine-phosphate py 78.5 27 0.00058 34.4 11.3 130 195-348 81-213 (221)
160 TIGR03586 PseI pseudaminic aci 78.4 29 0.00062 36.4 12.0 61 246-326 104-166 (327)
161 PRK07226 fructose-bisphosphate 78.4 69 0.0015 32.3 14.5 67 195-264 167-237 (267)
162 cd07938 DRE_TIM_HMGL 3-hydroxy 78.3 82 0.0018 32.0 16.9 208 170-400 7-228 (274)
163 cd07940 DRE_TIM_IPMS 2-isoprop 78.0 79 0.0017 31.7 18.9 159 184-350 16-185 (268)
164 cd00331 IGPS Indole-3-glycerol 77.9 62 0.0013 31.2 13.6 113 186-329 29-150 (217)
165 PRK13210 putative L-xylulose 5 77.8 31 0.00066 34.4 11.8 141 192-340 21-197 (284)
166 cd04742 NPD_FabD 2-Nitropropan 77.7 25 0.00055 38.0 11.6 122 191-326 86-247 (418)
167 PF01274 Malate_synthase: Mala 77.5 10 0.00022 42.2 8.7 124 201-326 203-363 (526)
168 cd00945 Aldolase_Class_I Class 77.0 55 0.0012 30.2 12.7 103 306-418 64-178 (201)
169 cd00452 KDPG_aldolase KDPG and 76.8 69 0.0015 30.4 13.9 107 188-327 16-124 (190)
170 TIGR02814 pfaD_fam PfaD family 76.8 29 0.00064 37.8 11.9 122 190-326 90-252 (444)
171 PF03102 NeuB: NeuB family; I 76.6 23 0.00051 35.4 10.4 99 213-337 55-154 (241)
172 cd00405 PRAI Phosphoribosylant 76.3 23 0.00049 34.0 10.0 117 188-331 7-131 (203)
173 PRK09250 fructose-bisphosphate 76.2 32 0.0007 36.3 11.6 172 205-393 38-234 (348)
174 cd00405 PRAI Phosphoribosylant 76.2 35 0.00075 32.7 11.2 121 188-333 60-189 (203)
175 cd00640 Trp-synth-beta_II Tryp 76.2 78 0.0017 30.9 14.0 117 276-418 63-186 (244)
176 cd00381 IMPDH IMPDH: The catal 76.0 6 0.00013 41.2 6.3 48 19-66 85-132 (325)
177 PRK12344 putative alpha-isopro 75.8 1.4E+02 0.003 33.4 19.5 162 184-350 23-200 (524)
178 TIGR00007 phosphoribosylformim 75.5 21 0.00045 34.8 9.6 120 188-328 82-219 (230)
179 TIGR01037 pyrD_sub1_fam dihydr 75.4 96 0.0021 31.5 14.9 104 211-329 140-265 (300)
180 COG1751 Uncharacterized conser 75.2 7.3 0.00016 36.3 5.8 46 373-418 11-57 (186)
181 TIGR03569 NeuB_NnaB N-acetylne 75.1 35 0.00076 35.8 11.6 57 246-322 103-161 (329)
182 cd04724 Tryptophan_synthase_al 74.6 53 0.0012 32.6 12.4 91 190-291 17-134 (242)
183 cd07943 DRE_TIM_HOA 4-hydroxy- 74.2 99 0.0022 30.9 16.2 186 185-400 19-220 (263)
184 TIGR03217 4OH_2_O_val_ald 4-hy 73.9 1.2E+02 0.0026 31.8 16.0 145 184-350 20-185 (333)
185 cd04739 DHOD_like Dihydroorota 73.6 76 0.0017 33.0 13.7 144 189-354 113-288 (325)
186 PRK15452 putative protease; Pr 73.5 22 0.00047 38.8 9.9 84 230-327 4-96 (443)
187 cd02803 OYE_like_FMN_family Ol 73.4 68 0.0015 32.9 13.3 129 184-327 130-311 (327)
188 TIGR00237 xseA exodeoxyribonuc 73.3 25 0.00055 38.1 10.4 141 125-292 59-225 (432)
189 cd00564 TMP_TenI Thiamine mono 73.2 54 0.0012 30.3 11.5 121 195-343 66-194 (196)
190 COG0119 LeuA Isopropylmalate/h 72.8 97 0.0021 33.5 14.5 167 171-351 12-189 (409)
191 PRK00278 trpC indole-3-glycero 72.4 65 0.0014 32.4 12.5 129 192-343 125-256 (260)
192 PF03437 BtpA: BtpA family; I 71.8 16 0.00034 37.0 7.8 72 199-277 170-251 (254)
193 PRK05283 deoxyribose-phosphate 71.5 45 0.00097 33.8 10.9 150 182-349 20-189 (257)
194 PRK00278 trpC indole-3-glycero 71.4 55 0.0012 32.9 11.7 109 189-328 71-188 (260)
195 cd04727 pdxS PdxS is a subunit 71.2 1.1E+02 0.0024 31.4 13.7 130 195-356 22-167 (283)
196 cd02809 alpha_hydroxyacid_oxid 70.9 31 0.00066 35.4 9.9 108 195-328 136-257 (299)
197 COG1830 FbaB DhnA-type fructos 70.4 77 0.0017 32.3 12.2 154 240-418 40-208 (265)
198 TIGR00259 thylakoid_BtpA membr 69.8 23 0.0005 35.9 8.5 91 185-278 154-252 (257)
199 PRK14045 1-aminocyclopropane-1 69.5 1.1E+02 0.0023 31.8 13.8 42 377-418 167-217 (329)
200 PRK13209 L-xylulose 5-phosphat 69.5 70 0.0015 31.9 12.1 36 195-230 28-73 (283)
201 TIGR01302 IMP_dehydrog inosine 69.3 8.6 0.00019 41.9 5.8 49 17-65 213-261 (450)
202 PRK13111 trpA tryptophan synth 68.4 43 0.00093 33.8 10.2 114 195-327 111-228 (258)
203 TIGR00343 pyridoxal 5'-phospha 68.4 1.5E+02 0.0032 30.6 14.5 114 208-353 51-166 (287)
204 cd00377 ICL_PEPM Members of th 67.9 33 0.00072 34.2 9.2 108 195-326 91-225 (243)
205 cd00954 NAL N-Acetylneuraminic 67.5 35 0.00076 34.7 9.5 96 192-291 25-133 (288)
206 TIGR00693 thiE thiamine-phosph 67.5 71 0.0015 30.1 11.1 121 195-342 67-195 (196)
207 TIGR01163 rpe ribulose-phospha 67.2 1.1E+02 0.0025 28.8 13.6 133 191-348 15-157 (210)
208 TIGR00259 thylakoid_BtpA membr 66.9 48 0.0011 33.5 10.1 95 190-294 92-208 (257)
209 PRK05581 ribulose-phosphate 3- 66.8 1E+02 0.0023 29.4 12.3 128 191-346 20-160 (220)
210 PF00899 ThiF: ThiF family; I 66.3 19 0.00041 32.0 6.5 68 215-293 57-124 (135)
211 PRK11840 bifunctional sulfur c 66.3 74 0.0016 33.4 11.5 76 260-351 227-302 (326)
212 PRK05096 guanosine 5'-monophos 66.3 13 0.00027 39.1 5.9 49 18-66 98-148 (346)
213 cd02922 FCB2_FMN Flavocytochro 66.2 76 0.0016 33.5 11.9 114 190-327 134-300 (344)
214 TIGR00674 dapA dihydrodipicoli 65.6 38 0.00083 34.3 9.3 98 191-292 22-130 (285)
215 PRK04180 pyridoxal biosynthesi 65.3 1.1E+02 0.0023 31.7 12.2 116 207-354 57-174 (293)
216 TIGR01305 GMP_reduct_1 guanosi 65.2 14 0.00031 38.8 6.0 49 18-66 97-147 (343)
217 cd04737 LOX_like_FMN L-Lactate 64.6 30 0.00065 36.6 8.5 92 212-327 209-305 (351)
218 PRK03620 5-dehydro-4-deoxygluc 64.4 45 0.00097 34.2 9.6 98 191-292 31-138 (303)
219 TIGR01037 pyrD_sub1_fam dihydr 64.1 1.7E+02 0.0037 29.7 14.1 85 229-328 90-190 (300)
220 PRK08227 autoinducer 2 aldolas 64.0 17 0.00036 37.0 6.2 139 195-349 101-248 (264)
221 cd04726 KGPDC_HPS 3-Keto-L-gul 63.7 55 0.0012 30.9 9.6 116 186-327 11-133 (202)
222 PRK15447 putative protease; Pr 63.5 30 0.00065 35.6 8.2 68 251-327 28-95 (301)
223 PRK00366 ispG 4-hydroxy-3-meth 63.5 50 0.0011 34.9 9.7 146 188-347 43-197 (360)
224 PRK05286 dihydroorotate dehydr 63.4 42 0.0009 35.2 9.3 117 201-329 169-320 (344)
225 cd04728 ThiG Thiazole synthase 63.4 1.3E+02 0.0027 30.4 12.1 70 266-351 159-228 (248)
226 PRK00208 thiG thiazole synthas 63.3 1.7E+02 0.0037 29.5 13.0 65 272-351 164-228 (250)
227 COG0826 Collagenase and relate 63.3 31 0.00068 36.4 8.3 80 241-327 15-99 (347)
228 cd00408 DHDPS-like Dihydrodipi 63.0 51 0.0011 33.1 9.6 93 195-291 25-128 (281)
229 PTZ00314 inosine-5'-monophosph 62.8 10 0.00022 41.9 4.8 45 21-65 234-278 (495)
230 PRK09856 fructoselysine 3-epim 62.7 1.3E+02 0.0028 29.8 12.4 119 195-318 20-172 (275)
231 PRK07315 fructose-bisphosphate 62.5 68 0.0015 33.0 10.5 103 229-337 77-183 (293)
232 cd01561 CBS_like CBS_like: Thi 62.3 1.5E+02 0.0032 30.0 12.9 120 277-418 67-193 (291)
233 PF05690 ThiG: Thiazole biosyn 62.1 28 0.0006 34.8 7.1 83 253-351 146-228 (247)
234 cd04723 HisA_HisF Phosphoribos 62.1 76 0.0016 31.3 10.4 129 189-339 89-230 (233)
235 PRK09250 fructose-bisphosphate 61.8 1E+02 0.0022 32.6 11.7 96 187-291 90-197 (348)
236 PRK02083 imidazole glycerol ph 61.7 1.4E+02 0.0031 29.5 12.5 130 189-340 85-240 (253)
237 PF01081 Aldolase: KDPG and KH 61.7 15 0.00032 35.7 5.1 106 205-327 11-128 (196)
238 PRK08005 epimerase; Validated 61.6 1.3E+02 0.0028 29.5 11.7 127 195-343 75-207 (210)
239 COG0821 gcpE 1-hydroxy-2-methy 61.4 1.3E+02 0.0028 31.8 12.0 141 195-349 43-192 (361)
240 PRK05458 guanosine 5'-monophos 61.3 14 0.00031 38.6 5.3 45 22-66 91-137 (326)
241 cd04738 DHOD_2_like Dihydrooro 61.3 75 0.0016 33.0 10.7 116 201-328 160-310 (327)
242 PLN02495 oxidoreductase, actin 60.8 2.4E+02 0.0052 30.3 15.0 148 185-353 124-320 (385)
243 COG0274 DeoC Deoxyribose-phosp 60.8 1.8E+02 0.004 28.9 12.6 151 182-347 18-180 (228)
244 PF01136 Peptidase_U32: Peptid 60.8 18 0.0004 35.2 5.8 42 28-69 157-198 (233)
245 PRK06843 inosine 5-monophospha 60.7 15 0.00031 39.7 5.4 50 16-65 141-190 (404)
246 cd00950 DHDPS Dihydrodipicolin 60.7 55 0.0012 33.0 9.4 95 194-292 27-132 (284)
247 PRK14024 phosphoribosyl isomer 60.3 1.5E+02 0.0033 29.3 12.3 135 188-340 85-235 (241)
248 cd00954 NAL N-Acetylneuraminic 59.8 87 0.0019 31.8 10.7 96 244-350 26-126 (288)
249 TIGR02320 PEP_mutase phosphoen 59.6 54 0.0012 33.7 9.1 64 195-258 99-189 (285)
250 TIGR00736 nifR3_rel_arch TIM-b 59.1 1.5E+02 0.0032 29.6 11.8 98 209-327 116-220 (231)
251 cd01485 E1-1_like Ubiquitin ac 59.0 40 0.00087 32.4 7.7 67 216-292 77-144 (198)
252 KOG3974 Predicted sugar kinase 58.9 58 0.0013 33.2 8.8 86 196-291 52-137 (306)
253 PF00582 Usp: Universal stress 58.7 27 0.00059 29.4 5.9 43 375-418 88-139 (140)
254 PF01645 Glu_synthase: Conserv 58.6 25 0.00055 37.4 6.7 139 169-327 148-303 (368)
255 PRK14057 epimerase; Provisiona 58.4 2.1E+02 0.0046 28.9 12.9 139 195-350 92-244 (254)
256 KOG3111 D-ribulose-5-phosphate 57.9 1.9E+02 0.0042 28.3 12.0 134 198-351 84-221 (224)
257 cd00408 DHDPS-like Dihydrodipi 57.8 1.2E+02 0.0025 30.5 11.2 89 252-351 32-123 (281)
258 cd02801 DUS_like_FMN Dihydrour 57.8 1.7E+02 0.0036 28.2 12.0 123 188-327 67-213 (231)
259 COG0042 tRNA-dihydrouridine sy 57.8 36 0.00078 35.5 7.6 62 195-264 159-234 (323)
260 TIGR01306 GMP_reduct_2 guanosi 57.6 21 0.00045 37.3 5.8 49 18-66 84-134 (321)
261 PRK08091 ribulose-phosphate 3- 57.5 2.1E+02 0.0045 28.5 13.6 131 195-345 85-225 (228)
262 cd01492 Aos1_SUMO Ubiquitin ac 57.3 51 0.0011 31.7 8.1 65 216-292 77-141 (197)
263 PRK13585 1-(5-phosphoribosyl)- 57.1 1.4E+02 0.003 29.2 11.3 127 188-336 86-231 (241)
264 cd00959 DeoC 2-deoxyribose-5-p 57.0 1.9E+02 0.004 27.8 12.3 87 304-402 66-155 (203)
265 TIGR02356 adenyl_thiF thiazole 56.8 41 0.00088 32.4 7.4 66 216-292 77-142 (202)
266 PLN02274 inosine-5'-monophosph 56.8 20 0.00043 39.8 5.7 50 16-65 236-285 (505)
267 cd02808 GltS_FMN Glutamate syn 56.7 1.1E+02 0.0023 32.8 11.2 119 196-327 178-314 (392)
268 PF07521 RMMBL: RNA-metabolisi 56.5 6.8 0.00015 28.3 1.4 24 41-64 7-31 (43)
269 cd04732 HisA HisA. Phosphorib 56.4 97 0.0021 30.0 10.1 148 189-349 30-188 (234)
270 PRK08385 nicotinate-nucleotide 56.3 31 0.00067 35.3 6.6 67 189-259 191-260 (278)
271 PRK07695 transcriptional regul 56.2 34 0.00073 32.7 6.6 36 30-65 17-52 (201)
272 TIGR01138 cysM cysteine syntha 56.2 2.3E+02 0.0051 28.7 13.3 118 277-418 73-196 (290)
273 PRK07114 keto-hydroxyglutarate 56.1 44 0.00096 33.0 7.5 106 204-326 17-138 (222)
274 PRK12290 thiE thiamine-phospha 55.9 1.2E+02 0.0027 33.0 11.3 134 189-349 268-414 (437)
275 cd01562 Thr-dehyd Threonine de 55.8 1.8E+02 0.004 29.3 12.4 116 276-418 78-198 (304)
276 TIGR02708 L_lactate_ox L-lacta 55.7 60 0.0013 34.6 8.9 92 212-328 216-313 (367)
277 TIGR00736 nifR3_rel_arch TIM-b 55.5 45 0.00099 33.2 7.5 75 189-267 149-229 (231)
278 TIGR01859 fruc_bis_ald_ fructo 55.2 1.3E+02 0.0028 30.8 11.0 100 230-336 75-182 (282)
279 PRK15005 universal stress prot 55.2 28 0.00062 30.5 5.6 40 378-418 96-143 (144)
280 TIGR01136 cysKM cysteine synth 55.0 2E+02 0.0043 29.2 12.4 118 277-418 72-196 (299)
281 PLN02282 phosphoglycerate kina 54.8 7.4 0.00016 41.8 1.9 329 1-415 24-373 (401)
282 COG0036 Rpe Pentose-5-phosphat 54.4 1.4E+02 0.003 29.6 10.5 60 195-257 78-137 (220)
283 COG1646 Predicted phosphate-bi 54.4 15 0.00033 36.5 3.9 174 231-443 17-211 (240)
284 cd05565 PTS_IIB_lactose PTS_II 54.2 49 0.0011 28.5 6.6 66 211-291 12-77 (99)
285 PRK07028 bifunctional hexulose 53.9 2E+02 0.0043 31.1 12.8 131 176-327 4-138 (430)
286 PRK06806 fructose-bisphosphate 53.9 39 0.00085 34.5 7.0 47 27-73 84-130 (281)
287 PLN02417 dihydrodipicolinate s 53.8 77 0.0017 32.1 9.1 94 192-291 26-130 (280)
288 PF00834 Ribul_P_3_epim: Ribul 53.6 35 0.00077 33.1 6.3 60 195-257 74-133 (201)
289 PLN02970 serine racemase 53.5 2.3E+02 0.0049 29.4 12.7 115 277-418 89-208 (328)
290 TIGR00542 hxl6Piso_put hexulos 53.5 2.4E+02 0.0052 28.0 12.7 37 195-231 23-69 (279)
291 PRK04147 N-acetylneuraminate l 53.4 1E+02 0.0022 31.4 10.0 99 190-292 26-136 (293)
292 PRK03170 dihydrodipicolinate s 53.1 73 0.0016 32.3 8.9 98 191-292 25-133 (292)
293 cd02811 IDI-2_FMN Isopentenyl- 52.9 2.1E+02 0.0046 29.7 12.4 53 286-351 255-310 (326)
294 PLN02826 dihydroorotate dehydr 52.8 2.4E+02 0.0051 30.6 13.0 88 228-327 261-370 (409)
295 TIGR00674 dapA dihydrodipicoli 52.8 1.2E+02 0.0025 30.8 10.3 96 246-352 26-125 (285)
296 PRK06381 threonine synthase; V 52.6 2.3E+02 0.005 29.0 12.6 117 277-418 77-205 (319)
297 PF04028 DUF374: Domain of unk 52.6 77 0.0017 25.9 7.1 61 17-83 10-72 (74)
298 cd03332 LMO_FMN L-Lactate 2-mo 52.2 64 0.0014 34.6 8.5 90 212-327 241-337 (383)
299 PRK07709 fructose-bisphosphate 52.2 1.7E+02 0.0037 30.0 11.3 98 230-336 78-185 (285)
300 TIGR01137 cysta_beta cystathio 51.8 2.1E+02 0.0045 30.8 12.6 122 277-418 76-203 (454)
301 PRK02615 thiamine-phosphate py 51.8 2.4E+02 0.0052 29.9 12.5 129 195-348 211-343 (347)
302 cd00951 KDGDH 5-dehydro-4-deox 51.7 94 0.002 31.6 9.4 97 190-292 23-131 (289)
303 PF00701 DHDPS: Dihydrodipicol 51.1 1.3E+02 0.0029 30.3 10.4 99 244-352 27-128 (289)
304 TIGR00853 pts-lac PTS system, 51.1 62 0.0013 27.5 6.7 62 215-291 19-80 (95)
305 COG0800 Eda 2-keto-3-deoxy-6-p 51.1 1.4E+02 0.0029 29.5 9.8 105 204-326 15-132 (211)
306 cd02932 OYE_YqiM_FMN Old yello 50.9 2.7E+02 0.0059 28.9 12.9 128 184-327 143-320 (336)
307 PRK12483 threonine dehydratase 50.8 1.7E+02 0.0037 32.7 11.8 151 230-418 52-219 (521)
308 TIGR01139 cysK cysteine syntha 50.6 2E+02 0.0043 29.2 11.6 119 277-418 71-196 (298)
309 PRK07428 nicotinate-nucleotide 50.4 53 0.0011 33.8 7.3 66 188-259 204-272 (288)
310 cd01487 E1_ThiF_like E1_ThiF_l 50.3 63 0.0014 30.4 7.3 67 216-293 54-121 (174)
311 COG1440 CelA Phosphotransferas 50.1 78 0.0017 27.6 7.1 62 215-291 17-78 (102)
312 PRK05848 nicotinate-nucleotide 49.9 56 0.0012 33.3 7.3 65 189-259 191-258 (273)
313 PRK07998 gatY putative fructos 49.9 93 0.002 32.0 8.9 111 229-346 74-194 (283)
314 PRK12331 oxaloacetate decarbox 49.8 3.3E+02 0.0072 29.8 13.7 185 184-399 22-231 (448)
315 TIGR03572 WbuZ glycosyl amidat 49.5 1.9E+02 0.0042 28.1 10.9 35 281-327 192-227 (232)
316 KOG2550 IMP dehydrogenase/GMP 49.4 30 0.00064 37.3 5.3 46 21-66 244-289 (503)
317 PLN02495 oxidoreductase, actin 49.4 2.4E+02 0.0052 30.3 12.3 89 230-330 114-217 (385)
318 cd00950 DHDPS Dihydrodipicolin 49.3 1.4E+02 0.0029 30.1 10.1 97 245-352 27-127 (284)
319 PRK04147 N-acetylneuraminate l 49.3 2.2E+02 0.0047 28.9 11.6 102 240-352 24-131 (293)
320 PRK08638 threonine dehydratase 49.2 2.1E+02 0.0045 29.9 11.7 116 276-418 88-208 (333)
321 PF03437 BtpA: BtpA family; I 49.0 1.3E+02 0.0029 30.3 9.8 43 311-353 33-78 (254)
322 cd00429 RPE Ribulose-5-phospha 49.0 2.3E+02 0.005 26.6 14.4 128 195-349 19-159 (211)
323 PRK10558 alpha-dehydro-beta-de 49.0 97 0.0021 31.2 8.8 87 219-327 10-98 (256)
324 cd00757 ThiF_MoeB_HesA_family 48.9 66 0.0014 31.5 7.5 67 215-292 76-142 (228)
325 COG0434 SgcQ Predicted TIM-bar 48.7 1.2E+02 0.0026 30.6 9.0 93 311-414 38-143 (263)
326 PRK13802 bifunctional indole-3 48.4 5E+02 0.011 30.2 18.9 47 375-422 364-412 (695)
327 TIGR02355 moeB molybdopterin s 48.4 63 0.0014 32.1 7.3 67 216-293 80-146 (240)
328 PRK07315 fructose-bisphosphate 48.3 59 0.0013 33.5 7.3 55 18-74 79-133 (293)
329 cd02940 DHPD_FMN Dihydropyrimi 48.2 2E+02 0.0043 29.4 11.2 87 230-328 100-201 (299)
330 PRK03170 dihydrodipicolinate s 47.8 1.8E+02 0.0038 29.5 10.7 96 246-352 29-128 (292)
331 cd04501 SGNH_hydrolase_like_4 47.6 47 0.001 30.5 6.0 53 241-293 47-103 (183)
332 cd00952 CHBPH_aldolase Trans-o 47.6 1.4E+02 0.0029 30.9 9.9 95 193-291 34-140 (309)
333 PRK10886 DnaA initiator-associ 47.6 1.2E+02 0.0025 29.4 8.8 44 375-418 25-79 (196)
334 PRK07334 threonine dehydratase 47.5 2.2E+02 0.0047 30.4 11.8 115 277-418 85-204 (403)
335 cd08567 GDPD_SpGDE_like Glycer 47.1 1E+02 0.0022 30.3 8.7 42 272-326 217-258 (263)
336 TIGR01108 oadA oxaloacetate de 47.1 4.8E+02 0.01 29.6 17.2 186 184-400 17-227 (582)
337 PRK07084 fructose-bisphosphate 46.9 2.1E+02 0.0045 30.0 11.0 131 216-350 72-215 (321)
338 TIGR00737 nifR3_yhdG putative 46.9 2.1E+02 0.0045 29.5 11.2 126 186-327 73-222 (319)
339 PRK08185 hypothetical protein; 46.9 63 0.0014 33.2 7.2 48 27-74 78-125 (283)
340 PRK04452 acetyl-CoA decarbonyl 46.5 2.6E+02 0.0056 29.3 11.6 149 187-349 136-311 (319)
341 PRK10717 cysteine synthase A; 46.1 2.4E+02 0.0052 29.1 11.6 126 277-418 78-209 (330)
342 cd08556 GDPD Glycerophosphodie 46.0 1.4E+02 0.0031 27.3 9.0 40 274-326 148-187 (189)
343 PRK00073 pgk phosphoglycerate 45.8 1.2E+02 0.0027 32.5 9.4 325 1-415 18-362 (389)
344 PRK15456 universal stress prot 45.8 44 0.00095 29.5 5.3 40 378-418 94-141 (142)
345 TIGR01093 aroD 3-dehydroquinat 45.7 66 0.0014 31.5 7.0 75 13-90 115-196 (228)
346 PRK10737 FKBP-type peptidyl-pr 45.5 81 0.0017 30.7 7.3 60 97-158 51-118 (196)
347 PRK06512 thiamine-phosphate py 45.4 96 0.0021 30.5 8.0 44 30-73 29-73 (221)
348 PRK10415 tRNA-dihydrouridine s 45.1 3.7E+02 0.0081 27.8 13.7 130 195-335 27-177 (321)
349 TIGR03239 GarL 2-dehydro-3-deo 44.9 1.3E+02 0.0028 30.2 8.9 87 219-327 3-91 (249)
350 PRK05690 molybdopterin biosynt 44.8 74 0.0016 31.7 7.2 66 216-292 88-153 (245)
351 PLN03013 cysteine synthase 44.5 3E+02 0.0066 30.0 12.2 118 278-418 190-313 (429)
352 PRK08644 thiamine biosynthesis 44.4 81 0.0018 30.7 7.3 67 216-293 83-150 (212)
353 cd04731 HisF The cyclase subun 44.4 3.1E+02 0.0068 26.8 11.8 45 283-339 190-235 (243)
354 COG1465 Predicted alternative 44.2 3.9E+02 0.0085 27.8 13.4 53 14-69 143-195 (376)
355 TIGR01768 GGGP-family geranylg 44.2 49 0.0011 32.8 5.7 176 240-453 15-208 (223)
356 cd00377 ICL_PEPM Members of th 44.2 3.3E+02 0.0072 27.0 11.8 38 382-420 166-204 (243)
357 PRK05567 inosine 5'-monophosph 43.8 55 0.0012 36.0 6.7 50 16-65 216-265 (486)
358 cd03316 MR_like Mandelate race 43.8 1.2E+02 0.0027 31.4 9.1 62 16-80 126-196 (357)
359 cd01987 USP_OKCHK USP domain i 43.7 52 0.0011 28.0 5.3 43 376-418 72-123 (124)
360 TIGR03249 KdgD 5-dehydro-4-deo 43.4 1.4E+02 0.0029 30.5 9.1 97 190-292 28-136 (296)
361 PF00677 Lum_binding: Lumazine 43.2 67 0.0014 26.7 5.6 41 118-162 21-62 (85)
362 cd01572 QPRTase Quinolinate ph 43.1 62 0.0013 32.8 6.4 63 188-259 190-255 (268)
363 PF01207 Dus: Dihydrouridine s 43.1 32 0.0007 35.5 4.5 69 190-263 140-218 (309)
364 PRK00230 orotidine 5'-phosphat 43.1 47 0.001 32.8 5.4 39 310-348 190-228 (230)
365 PF01487 DHquinase_I: Type I 3 43.0 1.1E+02 0.0024 29.6 8.1 66 13-78 110-182 (224)
366 TIGR00739 yajC preprotein tran 42.9 62 0.0013 27.0 5.3 42 123-167 31-72 (84)
367 cd04743 NPD_PKS 2-Nitropropane 42.8 3.9E+02 0.0084 28.0 12.3 114 191-327 73-202 (320)
368 cd01568 QPRTase_NadC Quinolina 42.7 55 0.0012 33.1 6.0 64 188-258 189-255 (269)
369 PLN02565 cysteine synthase 42.7 3.1E+02 0.0067 28.4 11.7 118 278-418 82-205 (322)
370 TIGR02313 HpaI-NOT-DapA 2,4-di 42.7 2.6E+02 0.0056 28.5 11.0 94 246-350 28-125 (294)
371 TIGR00683 nanA N-acetylneurami 42.6 1.9E+02 0.0042 29.4 10.1 98 190-291 23-133 (290)
372 PRK00748 1-(5-phosphoribosyl)- 42.4 2.4E+02 0.0052 27.2 10.3 35 282-328 186-221 (233)
373 cd02812 PcrB_like PcrB_like pr 42.4 39 0.00085 33.3 4.7 61 243-327 15-77 (219)
374 TIGR00742 yjbN tRNA dihydrouri 42.3 58 0.0013 33.9 6.2 70 186-263 139-228 (318)
375 PF04055 Radical_SAM: Radical 42.2 2E+02 0.0044 24.9 9.1 39 16-54 76-114 (166)
376 PRK09427 bifunctional indole-3 42.2 64 0.0014 35.4 6.8 107 189-326 168-283 (454)
377 TIGR03128 RuMP_HxlA 3-hexulose 41.7 3.1E+02 0.0067 25.9 10.9 120 185-327 9-133 (206)
378 PRK15118 universal stress glob 41.6 65 0.0014 28.3 5.8 40 378-418 92-137 (144)
379 TIGR02311 HpaI 2,4-dihydroxyhe 41.6 1.6E+02 0.0035 29.4 9.1 87 219-327 3-91 (249)
380 PF03644 Glyco_hydro_85: Glyco 41.4 38 0.00083 35.1 4.7 76 277-352 46-133 (311)
381 TIGR00010 hydrolase, TatD fami 41.3 2.4E+02 0.0052 27.1 10.2 102 189-294 16-129 (252)
382 PLN02826 dihydroorotate dehydr 41.2 1.3E+02 0.0029 32.5 8.9 100 183-286 271-396 (409)
383 TIGR00126 deoC deoxyribose-pho 41.2 2E+02 0.0043 28.2 9.4 104 303-418 66-181 (211)
384 COG0069 GltB Glutamate synthas 41.1 93 0.002 34.4 7.7 149 156-326 237-402 (485)
385 cd03309 CmuC_like CmuC_like. P 41.1 2.1E+02 0.0045 29.8 10.1 59 242-301 158-232 (321)
386 TIGR02708 L_lactate_ox L-lacta 41.0 89 0.0019 33.3 7.4 96 190-290 239-350 (367)
387 PRK01222 N-(5'-phosphoribosyl) 41.0 1.6E+02 0.0035 28.6 8.7 120 189-334 65-192 (210)
388 PF00701 DHDPS: Dihydrodipicol 40.9 2.1E+02 0.0046 28.8 10.0 102 187-292 21-133 (289)
389 cd02911 arch_FMN Archeal FMN-b 40.9 2E+02 0.0043 28.5 9.5 97 209-328 121-221 (233)
390 TIGR00875 fsa_talC_mipB fructo 40.9 41 0.00089 33.0 4.6 50 195-250 116-173 (213)
391 PRK04180 pyridoxal biosynthesi 40.8 1.5E+02 0.0033 30.6 8.7 36 312-347 219-254 (293)
392 TIGR01303 IMP_DH_rel_1 IMP deh 40.7 45 0.00097 36.7 5.3 48 18-65 215-262 (475)
393 COG0031 CysK Cysteine synthase 40.6 4.4E+02 0.0096 27.4 15.3 119 279-418 78-202 (300)
394 cd02911 arch_FMN Archeal FMN-b 40.6 83 0.0018 31.2 6.8 64 190-260 154-222 (233)
395 cd00952 CHBPH_aldolase Trans-o 40.5 2.9E+02 0.0063 28.4 11.1 95 246-351 36-134 (309)
396 PRK06815 hypothetical protein; 40.4 2.7E+02 0.006 28.6 10.9 115 277-418 82-201 (317)
397 PRK05742 nicotinate-nucleotide 40.4 86 0.0019 32.1 7.0 63 188-259 197-262 (277)
398 PRK09224 threonine dehydratase 40.3 4.2E+02 0.0091 29.4 12.9 116 276-418 81-202 (504)
399 TIGR00695 uxuA mannonate dehyd 40.3 72 0.0016 34.3 6.6 85 188-292 11-102 (394)
400 PRK08197 threonine synthase; V 40.2 2E+02 0.0043 30.7 10.0 48 373-422 110-159 (394)
401 COG0352 ThiE Thiamine monophos 40.2 2.9E+02 0.0064 27.1 10.4 135 192-349 73-208 (211)
402 PF10844 DUF2577: Protein of u 40.1 77 0.0017 27.2 5.6 71 59-138 2-85 (100)
403 cd04724 Tryptophan_synthase_al 40.1 2.6E+02 0.0056 27.7 10.2 115 195-327 98-215 (242)
404 TIGR03844 cysteate_syn cysteat 40.1 2.2E+02 0.0049 30.5 10.4 47 374-422 101-149 (398)
405 PRK07709 fructose-bisphosphate 40.1 92 0.002 32.0 7.2 54 18-72 79-132 (285)
406 PRK10812 putative DNAse; Provi 40.0 1.5E+02 0.0032 30.0 8.6 100 188-293 20-131 (265)
407 PRK11613 folP dihydropteroate 39.8 3.6E+02 0.0079 27.7 11.4 94 311-418 42-139 (282)
408 cd07937 DRE_TIM_PC_TC_5S Pyruv 39.3 4.2E+02 0.0091 26.7 14.4 153 184-350 17-191 (275)
409 cd04733 OYE_like_2_FMN Old yel 39.3 4.6E+02 0.01 27.2 12.5 129 184-327 138-322 (338)
410 TIGR01859 fruc_bis_ald_ fructo 38.9 1E+02 0.0022 31.6 7.2 54 18-72 76-129 (282)
411 cd00953 KDG_aldolase KDG (2-ke 38.9 2.5E+02 0.0054 28.4 10.1 92 193-291 25-126 (279)
412 PRK08639 threonine dehydratase 38.9 5E+02 0.011 27.9 13.0 116 277-418 87-212 (420)
413 PRK14024 phosphoribosyl isomer 38.9 48 0.001 32.8 4.8 73 195-273 153-237 (241)
414 TIGR00381 cdhD CO dehydrogenas 38.8 4.1E+02 0.0089 28.6 11.8 128 198-352 150-300 (389)
415 PRK00311 panB 3-methyl-2-oxobu 38.8 4.4E+02 0.0095 26.8 11.8 129 185-326 20-180 (264)
416 cd02808 GltS_FMN Glutamate syn 38.7 37 0.00079 36.4 4.2 92 189-294 226-341 (392)
417 PRK00043 thiE thiamine-phospha 38.6 1.7E+02 0.0036 27.7 8.4 44 30-73 24-67 (212)
418 cd05845 Ig2_L1-CAM_like Second 38.6 1.4E+02 0.0031 25.4 7.0 69 94-165 11-82 (95)
419 PRK08610 fructose-bisphosphate 38.5 3.3E+02 0.0072 28.0 10.9 100 230-336 78-185 (286)
420 PRK06381 threonine synthase; V 38.3 2.3E+02 0.0049 29.1 9.9 86 327-422 8-95 (319)
421 cd08564 GDPD_GsGDE_like Glycer 38.3 2.9E+02 0.0064 27.4 10.5 55 273-343 210-264 (265)
422 TIGR01275 ACC_deam_rel pyridox 38.3 2.3E+02 0.0049 28.9 9.8 39 380-418 156-202 (311)
423 PRK07476 eutB threonine dehydr 38.3 4.6E+02 0.01 26.9 12.5 115 277-418 81-200 (322)
424 PRK07998 gatY putative fructos 38.2 1.4E+02 0.0031 30.6 8.2 48 27-74 84-131 (283)
425 PF01729 QRPTase_C: Quinolinat 37.8 39 0.00085 31.9 3.8 62 192-259 92-156 (169)
426 COG1157 FliI Flagellar biosynt 37.8 2.7E+02 0.0059 30.3 10.4 238 74-353 32-303 (441)
427 TIGR01858 tag_bisphos_ald clas 37.7 98 0.0021 31.8 6.9 46 27-72 82-127 (282)
428 PRK11761 cysM cysteine synthas 37.1 4.2E+02 0.0091 27.0 11.5 118 277-418 77-200 (296)
429 PRK12475 thiamine/molybdopteri 37.1 1.2E+02 0.0025 31.9 7.5 66 216-292 82-147 (338)
430 cd01573 modD_like ModD; Quinol 37.0 1.1E+02 0.0024 31.1 7.2 63 190-258 193-258 (272)
431 PRK07896 nicotinate-nucleotide 36.8 90 0.002 32.2 6.5 64 190-259 209-275 (289)
432 PRK04885 ppnK inorganic polyph 36.8 35 0.00075 34.6 3.5 32 387-418 145-180 (265)
433 smart00729 Elp3 Elongator prot 36.8 2.7E+02 0.0059 25.3 9.4 49 19-67 89-146 (216)
434 PRK08328 hypothetical protein; 36.8 1.3E+02 0.0027 29.7 7.4 63 219-292 87-149 (231)
435 PRK07591 threonine synthase; V 36.8 4.4E+02 0.0096 28.4 12.1 117 276-418 150-280 (421)
436 PRK05597 molybdopterin biosynt 36.7 1.2E+02 0.0026 31.9 7.6 66 216-292 84-149 (355)
437 COG2070 Dioxygenases related t 36.7 2.6E+02 0.0056 29.4 10.0 110 195-326 97-212 (336)
438 PF09370 TIM-br_sig_trns: TIM- 36.7 1E+02 0.0023 31.4 6.7 61 21-83 152-223 (268)
439 PRK06382 threonine dehydratase 36.6 5.3E+02 0.011 27.6 12.7 114 278-418 88-206 (406)
440 cd04737 LOX_like_FMN L-Lactate 36.4 86 0.0019 33.2 6.4 94 191-289 233-342 (351)
441 PRK07107 inosine 5-monophospha 36.4 65 0.0014 35.8 5.8 50 15-65 230-279 (502)
442 PRK09140 2-dehydro-3-deoxy-6-p 36.4 2.5E+02 0.0053 27.3 9.2 110 186-326 20-130 (206)
443 PRK11750 gltB glutamate syntha 36.4 83 0.0018 39.3 7.0 138 169-326 941-1095(1485)
444 cd04735 OYE_like_4_FMN Old yel 36.3 4E+02 0.0087 27.9 11.5 131 183-327 132-313 (353)
445 cd00947 TBP_aldolase_IIB Tagat 36.3 3.7E+02 0.008 27.5 10.8 129 216-350 58-195 (276)
446 PLN02979 glycolate oxidase 36.2 1.8E+02 0.0039 31.1 8.7 87 212-327 211-307 (366)
447 TIGR00693 thiE thiamine-phosph 36.1 1.3E+02 0.0028 28.3 7.1 44 30-73 16-59 (196)
448 TIGR01127 ilvA_1Cterm threonin 36.0 4E+02 0.0087 28.0 11.6 116 276-418 61-181 (380)
449 PRK12677 xylose isomerase; Pro 36.0 5.3E+02 0.012 27.5 12.4 154 186-342 29-231 (384)
450 cd06557 KPHMT-like Ketopantoat 35.9 3.9E+02 0.0085 27.0 10.8 129 185-326 17-177 (254)
451 PRK09140 2-dehydro-3-deoxy-6-p 35.9 4.2E+02 0.009 25.7 10.9 108 191-329 74-181 (206)
452 PRK08185 hypothetical protein; 35.8 2.6E+02 0.0057 28.7 9.6 106 228-337 67-179 (283)
453 PF02662 FlpD: Methyl-viologen 35.6 64 0.0014 28.8 4.6 30 301-330 33-62 (124)
454 PRK10425 DNase TatD; Provision 35.4 2.3E+02 0.005 28.4 9.1 102 188-293 15-128 (258)
455 PRK09195 gatY tagatose-bisphos 35.1 1.2E+02 0.0025 31.3 6.9 45 27-71 84-128 (284)
456 PRK08610 fructose-bisphosphate 35.1 1.2E+02 0.0027 31.1 7.1 46 27-72 87-132 (286)
457 PRK06793 fliI flagellum-specif 34.7 6.4E+02 0.014 27.5 13.2 244 74-352 29-294 (432)
458 cd00564 TMP_TenI Thiamine mono 34.7 1.4E+02 0.0031 27.4 7.1 44 30-73 15-58 (196)
459 PRK09590 celB cellobiose phosp 34.6 1.9E+02 0.004 25.1 7.2 76 214-308 16-93 (104)
460 PRK10128 2-keto-3-deoxy-L-rham 34.6 2.4E+02 0.0051 28.7 9.0 87 219-327 9-97 (267)
461 COG4043 Preprotein translocase 34.5 54 0.0012 28.5 3.7 29 121-150 26-54 (111)
462 cd04731 HisF The cyclase subun 34.4 1.3E+02 0.0028 29.5 7.1 72 195-271 156-236 (243)
463 PRK07535 methyltetrahydrofolat 34.3 93 0.002 31.4 6.1 53 31-85 29-81 (261)
464 COG0061 nadF NAD kinase [Coenz 34.3 40 0.00087 34.3 3.5 33 386-418 162-198 (281)
465 TIGR03528 2_3_DAP_am_ly diamin 34.3 4.7E+02 0.01 28.1 11.7 121 277-418 127-260 (396)
466 PLN02535 glycolate oxidase 34.2 3.1E+02 0.0067 29.3 10.2 96 211-330 210-310 (364)
467 PRK06801 hypothetical protein; 34.1 2.1E+02 0.0046 29.4 8.7 105 228-336 73-185 (286)
468 PRK08195 4-hyroxy-2-oxovalerat 34.1 1.2E+02 0.0026 31.9 7.0 52 14-65 75-126 (337)
469 cd05722 Ig1_Neogenin First imm 34.0 2E+02 0.0043 23.4 7.2 75 95-170 8-89 (95)
470 COG0329 DapA Dihydrodipicolina 33.9 3E+02 0.0065 28.3 9.9 98 190-291 27-135 (299)
471 PRK14040 oxaloacetate decarbox 33.9 7.6E+02 0.016 28.1 13.8 185 184-400 23-233 (593)
472 PRK08329 threonine synthase; V 33.9 3E+02 0.0064 28.8 10.0 48 373-422 87-136 (347)
473 PRK02083 imidazole glycerol ph 33.8 3.2E+02 0.0069 27.0 9.8 36 382-418 159-203 (253)
474 PLN00011 cysteine synthase 33.7 5.5E+02 0.012 26.5 13.1 121 277-421 83-209 (323)
475 PRK05638 threonine synthase; V 33.6 4E+02 0.0086 28.9 11.2 107 276-409 125-231 (442)
476 cd08579 GDPD_memb_like Glycero 33.4 3.1E+02 0.0066 26.3 9.4 42 272-326 176-217 (220)
477 PLN02623 pyruvate kinase 33.3 7.7E+02 0.017 28.1 16.2 96 117-224 227-340 (581)
478 PRK05835 fructose-bisphosphate 33.2 1.4E+02 0.003 31.2 7.2 54 17-71 75-128 (307)
479 PRK02412 aroD 3-dehydroquinate 33.2 1.3E+02 0.0029 30.0 7.0 61 14-74 133-200 (253)
480 PRK08072 nicotinate-nucleotide 33.2 1.1E+02 0.0025 31.2 6.5 65 186-259 194-261 (277)
481 PF04312 DUF460: Protein of un 33.2 42 0.0009 30.8 3.0 20 275-294 65-84 (138)
482 COG0159 TrpA Tryptophan syntha 33.1 3.2E+02 0.0069 27.9 9.6 113 195-327 116-233 (265)
483 PRK15108 biotin synthase; Prov 33.1 1.1E+02 0.0024 32.1 6.7 31 16-48 124-154 (345)
484 PRK11175 universal stress prot 33.1 2.9E+02 0.0063 27.5 9.6 41 377-418 95-144 (305)
485 PF01261 AP_endonuc_2: Xylose 33.0 59 0.0013 30.1 4.2 96 195-290 2-129 (213)
486 PRK05286 dihydroorotate dehydr 33.0 5.9E+02 0.013 26.6 15.8 103 285-399 136-248 (344)
487 PRK06801 hypothetical protein; 32.8 1.6E+02 0.0035 30.2 7.6 46 27-72 84-129 (286)
488 PRK03910 D-cysteine desulfhydr 32.7 3.9E+02 0.0085 27.6 10.6 30 389-418 183-216 (331)
489 TIGR00683 nanA N-acetylneurami 32.5 5E+02 0.011 26.4 11.2 95 245-350 27-126 (290)
490 cd03320 OSBS o-Succinylbenzoat 32.5 1.8E+02 0.0038 29.0 7.8 63 16-81 72-135 (263)
491 PRK08206 diaminopropionate amm 32.5 3.6E+02 0.0078 28.9 10.5 121 277-418 130-262 (399)
492 cd06556 ICL_KPHMT Members of t 32.3 3.7E+02 0.0079 26.9 9.8 35 383-418 163-197 (240)
493 COG0051 RpsJ Ribosomal protein 32.2 74 0.0016 27.8 4.2 36 42-83 4-39 (104)
494 PRK08526 threonine dehydratase 32.2 5.8E+02 0.013 27.4 12.1 116 276-418 81-201 (403)
495 TIGR01740 pyrF orotidine 5'-ph 32.2 3.5E+02 0.0075 26.1 9.6 48 195-242 70-117 (213)
496 PRK14852 hypothetical protein; 32.1 1.2E+02 0.0025 36.6 7.2 70 216-294 388-457 (989)
497 cd02933 OYE_like_FMN Old yello 32.1 4.5E+02 0.0097 27.5 11.0 123 184-327 141-314 (338)
498 cd04736 MDH_FMN Mandelate dehy 32.1 2.2E+02 0.0047 30.4 8.6 32 284-327 287-318 (361)
499 TIGR01036 pyrD_sub2 dihydrooro 32.0 2.6E+02 0.0056 29.3 9.2 129 186-326 149-316 (335)
500 PF11213 DUF3006: Protein of u 32.0 1.1E+02 0.0024 24.5 5.0 42 100-145 8-50 (71)
No 1
>PLN02461 Probable pyruvate kinase
Probab=100.00 E-value=2.4e-138 Score=1106.18 Aligned_cols=496 Identities=84% Similarity=1.275 Sum_probs=464.0
Q ss_pred ccccCCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEecCCCeeEEee
Q 010627 10 AIEKKPKTKIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGILCAVMLDTKGPEIRTGF 89 (505)
Q Consensus 10 ~~~~~r~tkIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~GpkiR~g~ 89 (505)
.+.++|||||||||||+|+++|+|++|+++|||+||||||||++++|.++++++|+++++.++|++||+||||||||+|.
T Consensus 16 ~~~~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~h~~~i~~vr~~~~~~g~~i~Il~Dl~GPkIR~g~ 95 (511)
T PLN02461 16 DGLRRPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGSHEYHQETLDNLRQAMANTGILCAVMLDTKGPEIRTGF 95 (511)
T ss_pred ccccCCCCeEEEEeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCeEEEeeCCCCceeccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEecCCCEEEEEecCCCCCCccEEEecchhhhcccCCCCEEEEeCCeEEEEEEEEeeeCCeEEEEEeeCceecC
Q 010627 90 LKDGKPIQLKQGQEITISTDYTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGE 169 (505)
Q Consensus 90 ~~~~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~~~i~~~v~~gG~l~s 169 (505)
+++++++.|++||.++|+.+....++++.|++||++|++.+++||.||+|||+|.|+|++++.+++.++|+|++||.|++
T Consensus 96 ~~~~~~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~~~~~v~~Gd~IlidDG~i~l~V~~~~~~~~~i~~~v~~gG~l~s 175 (511)
T PLN02461 96 LKDGKPVQLKQGQEITITTDYSIKGDENMIAMSYKKLAVDVKPGSVILCADGTITLTVLSCDVEAGTVRCRCENSAMLGE 175 (511)
T ss_pred cCCCCceecCCCCEEEEecCCccCCCCCEEEeccHHHHhhcCCCCEEEEeCCEEEEEEEEEecCCCEEEEEEecCcEecC
Confidence 98765799999999999988666788889999999999999999999999999999999765457899999999999999
Q ss_pred CCCcccCCccccCCCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHH
Q 010627 170 RKNVNLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDIL 249 (505)
Q Consensus 170 ~Kgvnlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~ 249 (505)
+||+|+||..+++|.|||||++||.+|++++++|||++|||++++||+++|++|.+.+.+++||||||+++|++||+||+
T Consensus 176 ~Kgvnlpg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SFVr~a~DV~~~r~~l~~~~~~~~IiAKIE~~~av~nl~eIi 255 (511)
T PLN02461 176 RKNVNLPGVVVDLPTLTEKDKEDILQWGVPNKIDFIALSFVRKGSDLVEVRKVLGEHAKSILLISKVENQEGLDNFDDIL 255 (511)
T ss_pred CceeeecccccCCCCCCHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHHhCCCCCCEEEEECCHHHHHHHHHHH
Confidence 99999999999999999999999736999999999999999999999999999998888999999999999999999999
Q ss_pred hcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeeccc
Q 010627 250 ANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGE 329 (505)
Q Consensus 250 ~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~E 329 (505)
+++|||||||||||+|+|+++||.+||+|++.|+++|||||+||||||||++||+|||||++||||||+||+||+|||+|
T Consensus 256 ~~sDgIMVARGDLGvEip~e~vp~~Qk~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVanAV~dG~D~vMLS~E 335 (511)
T PLN02461 256 AESDAFMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGE 335 (511)
T ss_pred HhcCEEEEeccccccccCHHHhHHHHHHHHHHHHHcCCCeEEeehhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEEech
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcccCchhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhh
Q 010627 330 TAAGAYPEVAVRTMAQICVEAESTLDYGDVFKRVMQHSPVPMSPLESLASSAVRTANSARATLILVLTRGGSTAKLVAKY 409 (505)
Q Consensus 330 ta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~ls~~ 409 (505)
||+|+||+|+|++|++||++||+.++|..+|.........+.++.+++|.+|+++|.+++|++|++||+||+||+++|||
T Consensus 336 TA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~a~aIiv~T~sG~tA~~iSk~ 415 (511)
T PLN02461 336 TAAGAYPELAVKTMARICREAEASLDYGALFKEIMRSAPLPMSPLESLASSAVRTANKVKASLIVVLTRGGTTARLVAKY 415 (511)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHhccchhhhhhhhcccccccCChHHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhh
Confidence 99999999999999999999999776655554432111113356799999999999999999999999999999999999
Q ss_pred CCCCcEEEEeecccccCCCCcCCCChhhhhccccccccEEEEeCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEE
Q 010627 410 RPGMPILSVVVPEIKTDNFDWSCSNEAPARHSLIFRGLVPVLYAGSARASDAETTEEALEFAIELGKKKGLCKKGDSVVA 489 (505)
Q Consensus 410 RP~~pIiav~~p~~~~t~~~~~~~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~e~~i~~al~~~~~~g~~~~GD~VVv 489 (505)
||+|||||++.|++.|.+++|+|++++++|||+|+|||+|++++......|..+.+++++.|++++++.|++++||.||+
T Consensus 416 RP~~pIia~t~~~~~~~~~~w~~~~~~~ar~l~L~~GV~P~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~Gd~vvv 495 (511)
T PLN02461 416 RPAVPILSVVVPEITTDSFDWSCSDEAPARHSLIYRGLIPVLAEGSAKATDSESTEEILEAAIEHAKKKGLCKPGDSVVA 495 (511)
T ss_pred CCCCCEEEEecCcccccccccccCCHHHhhhhheecceEEEEecccccccccCCHHHHHHHHHHHHHHcCCCCCcCEEEE
Confidence 99999999966667777999999999999999999999999887644445677899999999999999999999999999
Q ss_pred EeecCCCceEEEEEcC
Q 010627 490 LHRVGTASVIKILNVK 505 (505)
Q Consensus 490 v~g~g~tn~ikI~~v~ 505 (505)
++|+|+||++||..++
T Consensus 496 v~~~g~tn~i~v~~v~ 511 (511)
T PLN02461 496 LHRIGGASVIKILTVK 511 (511)
T ss_pred EecCCCCcEEEEEEeC
Confidence 9999999999999875
No 2
>PTZ00066 pyruvate kinase; Provisional
Probab=100.00 E-value=2.5e-135 Score=1081.92 Aligned_cols=472 Identities=53% Similarity=0.846 Sum_probs=444.3
Q ss_pred cCCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHc-CCeeEEEEecCCCeeEEeecC
Q 010627 13 KKPKTKIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNT-GILCAVMLDTKGPEIRTGFLK 91 (505)
Q Consensus 13 ~~r~tkIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~-~~~v~i~~Dl~GpkiR~g~~~ 91 (505)
.+|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++. ++|++|++||||||||+|.++
T Consensus 36 ~~rktKIi~TiGPas~~~e~l~~mi~aGm~v~RlN~SHg~~e~~~~~i~~vR~~~~~~~~~~iaIl~Dl~GPkiR~g~~~ 115 (513)
T PTZ00066 36 RQKKTHIVCTMGPACKNVETLVKLIDAGMNICRFNFSHGDHESHKKTLNNVREAAKARPNANLGILLDTKGPEIRTGFLK 115 (513)
T ss_pred cCCCCeEEEeeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCceEEEeeCCCCceeecccC
Confidence 5799999999999999999999999999999999999999999999999999999996 899999999999999999998
Q ss_pred CCCcEEecCCCEEEEEecCCCCCCccEEEecchhhhcccCCCCEEEEeCCeEEEEEEEEeeeCCeEEEEEeeCceecCCC
Q 010627 92 DGKPIQLKQGQEITISTDYTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGERK 171 (505)
Q Consensus 92 ~~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~~~i~~~v~~gG~l~s~K 171 (505)
+++++.|++|+.++|+.++...++++.+++||++|++.+++||+||+|||.|.|+|++ ++++.+.|+|++||.|+++|
T Consensus 116 ~~~~i~l~~G~~~~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~--~~~~~v~~~v~~gG~l~~~K 193 (513)
T PTZ00066 116 NHKPITLKEGQTLKITTDYTFLGDETCISCSYKKLPQSVKVGNIILIADGSLSCKVLE--VHDDYIITKVLNNATIGERK 193 (513)
T ss_pred CCCeEEeCCCCEEEEecCCccCCCCcEEecchHHHHhhccCCCEEEEeCCEEEEEEEE--EECCEEEEEEEeCcEEcCCc
Confidence 6557999999999999876567888899999999999999999999999999999995 57899999999999999999
Q ss_pred CcccCCccccCCCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc
Q 010627 172 NVNLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN 251 (505)
Q Consensus 172 gvnlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~ 251 (505)
|+|+||..+++|.||++|++||.+|++++|+|||++|||++++||+++|++|++.|.+++||||||+++|++|||||+++
T Consensus 194 gvnlpg~~~~lp~ltekD~~dI~~f~~~~~vD~IalSFVr~a~DI~~~r~~l~~~g~~~~IiAKIE~~~av~NldeIl~~ 273 (513)
T PTZ00066 194 NMNLPGVKVELPVIGEKDKNDILNFAIPMGCDFIALSFVQSADDVRLCRQLLGERGRHIKIIPKIENIEGLINFDEILAE 273 (513)
T ss_pred ccccCCCccCCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHHHh
Confidence 99999999999999999999964799999999999999999999999999999888899999999999999999999999
Q ss_pred CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCC
Q 010627 252 SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETA 331 (505)
Q Consensus 252 sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta 331 (505)
+|||||||||||+|+|+++||.+||+||++|+++|||||+||||||||++||+|||||++||||||+||+||+|||+|||
T Consensus 274 sDGIMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVaNAV~DG~DavMLSgETA 353 (513)
T PTZ00066 274 SDGIMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVANAVLDGTDCVMLSGETA 353 (513)
T ss_pred cCEEEEEccccccccChHHcchHHHHHHHHHHHhCCCEEEechhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEecchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcccCchhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCC
Q 010627 332 AGAYPEVAVRTMAQICVEAESTLDYGDVFKRVMQHSPVPMSPLESLASSAVRTANSARATLILVLTRGGSTAKLVAKYRP 411 (505)
Q Consensus 332 ~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~ls~~RP 411 (505)
+|+||+|+|++|++||++||+.++|..+|.........+.+..+++|.+|+++|.+++|++|++||.||+||+++|||||
T Consensus 354 ~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aa~~~A~~l~a~aIv~~T~SG~TAr~iSk~RP 433 (513)
T PTZ00066 354 NGKFPVEAVNIMAKICFEAETCIDYRVLYHAIHLAVPTPVSVQEAVARSAVETAEDINAKLIIALTETGNTARLISKYRP 433 (513)
T ss_pred CCcCHHHHHHHHHHHHHHHhhccchHHhhhhhhccccCCCchhhHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCC
Confidence 99999999999999999999977665454433221111224468999999999999999999999999999999999999
Q ss_pred CCcEEEEeecccccCCCCcCCCChhhhhccccccccEEEEeCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEe
Q 010627 412 GMPILSVVVPEIKTDNFDWSCSNEAPARHSLIFRGLVPVLYAGSARASDAETTEEALEFAIELGKKKGLCKKGDSVVALH 491 (505)
Q Consensus 412 ~~pIiav~~p~~~~t~~~~~~~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~e~~i~~al~~~~~~g~~~~GD~VVvv~ 491 (505)
+|||||+ | +++.++|||+|+|||+|++++. ..+.+++++.|++++++.|++++||.||+++
T Consensus 434 ~~pIia~-------t------~~~~~~R~L~L~wGV~p~~~~~------~~~~~~~i~~a~~~~~~~g~~~~GD~vVv~~ 494 (513)
T PTZ00066 434 SCTILAL-------S------ASPSVVKSLSVARGVTTYVVNS------FQGTDVVIRNAIALAKERGLVESGDSAIAVH 494 (513)
T ss_pred CCCEEEE-------C------CCHHHHHHhhcccCcEEEEecC------CCCHHHHHHHHHHHHHHcCCCCCCCEEEEEe
Confidence 9999999 8 9999999999999999998865 4578899999999999999999999999999
Q ss_pred ec-----CCCceEEEEEcC
Q 010627 492 RV-----GTASVIKILNVK 505 (505)
Q Consensus 492 g~-----g~tn~ikI~~v~ 505 (505)
|+ |+||++||+.||
T Consensus 495 g~~~~~~g~tn~irv~~v~ 513 (513)
T PTZ00066 495 GVKEEVAGSSNLMKVVKIP 513 (513)
T ss_pred CCCCCCCCCCeEEEEEEcC
Confidence 96 789999999986
No 3
>PLN02762 pyruvate kinase complex alpha subunit
Probab=100.00 E-value=3.9e-135 Score=1081.06 Aligned_cols=469 Identities=33% Similarity=0.544 Sum_probs=436.4
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEecCCCeeEEeecCCC
Q 010627 14 KPKTKIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGILCAVMLDTKGPEIRTGFLKDG 93 (505)
Q Consensus 14 ~r~tkIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~GpkiR~g~~~~~ 93 (505)
+|||||||||||+|+++|+|++|+++|||+||||||||++++|++.++++|+++++.++|++||+||||||||+|.+.++
T Consensus 24 ~rrTKIV~TiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~iR~~~~~~~~~vaIl~Dl~GPkIR~g~~~~~ 103 (509)
T PLN02762 24 TRRTKLVCTIGPACCGFEQLEALAMGGMNVARLNMCHGTREWHRDVIRRVRRLNEEKGFAVAVMMDTEGSEIHMGDLGGA 103 (509)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCceEEEecCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred CcEEecCCCEEEEEecCCCCC--CccEEEecchhhhcccCCCCEEEEeCCeEEEEEEEEeeeCCeEEEEEeeCceecCCC
Q 010627 94 KPIQLKQGQEITISTDYTIKG--DENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGERK 171 (505)
Q Consensus 94 ~~i~l~~G~~v~l~~~~~~~~--~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~~~i~~~v~~gG~l~s~K 171 (505)
+++.|++||.|+|+.+. ..| +.+.+++||++|++.+++||.||+|||.|.|+|++ ++++.+.|+|++||.|++||
T Consensus 104 ~~i~l~~G~~v~lt~~~-~~g~~~~~~i~v~y~~l~~~v~~Gd~IlidDG~i~l~V~~--~~~~~v~~~v~~~G~l~~~K 180 (509)
T PLN02762 104 SSAKAEDGEEWTFTVRK-FDGSRPEFTIQVNYDGFAEDVKVGDELVVDGGMVRFEVIE--KIGPDVKCKCTDPGLLLPRA 180 (509)
T ss_pred ccEEecCCCEEEEeCCc-cCCCCCCcEEeechHHHHHhcCCCCEEEEeCCEEEEEEEE--EECCEEEEEEEeCcEEcCCC
Confidence 57999999999999763 345 35789999999999999999999999999999995 47889999999999999999
Q ss_pred Cccc-------CCccccCCCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCC--CceEEEEecCHHHH
Q 010627 172 NVNL-------PGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAK--NILLMSKVENQEGV 242 (505)
Q Consensus 172 gvnl-------p~~~~~l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~--~~~IiakIEt~~av 242 (505)
|||+ |++.+++|.|||||++|| +|++++|+|||++|||++++||+++|++|.+.|. +++||||||+++|+
T Consensus 181 gvNl~~~g~~~p~~~~~lp~ltekD~~di-~f~~~~~vD~ia~SFVr~a~Dv~~~r~~l~~~g~~~~~~IiAKIE~~~av 259 (509)
T PLN02762 181 NLTFWRDGSLVRERNAMLPTISSKDWLDI-DFGISEGVDFIAVSFVKSAEVIKHLKSYIAARSRDSDIGVIAKIESLDSL 259 (509)
T ss_pred ceeeccccCCCCCCccCCCCCCHHHHHHH-HHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCCceEEEEeCCHHHH
Confidence 9999 999999999999999999 9999999999999999999999999999988765 79999999999999
Q ss_pred hcHHHHHhcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCc
Q 010627 243 ANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTD 322 (505)
Q Consensus 243 ~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D 322 (505)
+||+||+++||||||||||||+|+|+++||.+||+||++|+++|||||+||||||||++||+|||||++||||||+||+|
T Consensus 260 ~nl~eIi~~sDgiMVARGDLGvEip~e~vp~~QK~II~~c~~~gKPVIvATQmLeSMi~np~PTRAEvsDVaNAVlDGtD 339 (509)
T PLN02762 260 KNLEEIIRASDGAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRAD 339 (509)
T ss_pred HHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCEEEECchHHhhhhCCCCCchhHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccCCCCCCHHHHHHHHHHHHHHHhcccCchhhHHhh--hhCCC-CCCCchhhHHHHHHHHHHhcCCcEEEEEcCC
Q 010627 323 CVMLSGETAAGAYPEVAVRTMAQICVEAESTLDYGDVFKRV--MQHSP-VPMSPLESLASSAVRTANSARATLILVLTRG 399 (505)
Q Consensus 323 ~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~--~~~~~-~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~s 399 (505)
|+|||+|||+|+||+|+|++|++||+++|+++.+...+... ..... .+.+..+++|.+|+++|.+++|++||+||+|
T Consensus 340 avMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~aia~sa~~~A~~l~a~aIv~~T~s 419 (509)
T PLN02762 340 ALMLSGESAMGLYPEKALSVLRSVSLRMELWSREEKRHEALELPQLSSSLSDRISEEICNSAAKMANNLGVDAIFVYTKH 419 (509)
T ss_pred EEEEcchhcCCCCHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhccccccccchHHHHHHHHHHHHhhcCCCEEEEECCC
Confidence 99999999999999999999999999999864321111110 01111 1124568999999999999999999999999
Q ss_pred chHHHHHHhhCCCCcEEEEeecccccCCCCcCCCChhhhhccccccccEEEEeCCCCCCCCccCHHHHHHHHHHHHHHcC
Q 010627 400 GSTAKLVAKYRPGMPILSVVVPEIKTDNFDWSCSNEAPARHSLIFRGLVPVLYAGSARASDAETTEEALEFAIELGKKKG 479 (505)
Q Consensus 400 G~ta~~ls~~RP~~pIiav~~p~~~~t~~~~~~~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~e~~i~~al~~~~~~g 479 (505)
|+||+++|||||.+||||+ | ++++++|||+|+|||+|++.+. ..+.+++++.+++++++.|
T Consensus 420 G~tA~~iSk~RP~~pIia~-------t------~~~~~~r~l~l~~GV~p~~~~~------~~~~~~~~~~~~~~~~~~g 480 (509)
T PLN02762 420 GHMASLLSRNRPDCPIFAF-------T------DTTSVRRRLNLQWGLIPFRLDF------SDDMESNLNKTFSLLKARG 480 (509)
T ss_pred cHHHHHHHhhCCCCCEEEE-------C------CCHHHHHHhhcccCcEEEEeCC------CCCHHHHHHHHHHHHHHcC
Confidence 9999999999999999999 8 9999999999999999998764 5678899999999999999
Q ss_pred CCCCCCEEEEEeec---CCCceEEEEEcC
Q 010627 480 LCKKGDSVVALHRV---GTASVIKILNVK 505 (505)
Q Consensus 480 ~~~~GD~VVvv~g~---g~tn~ikI~~v~ 505 (505)
++++||.||+++|+ |+||+|||..||
T Consensus 481 ~~~~GD~VVv~~g~~~~g~tn~i~v~~v~ 509 (509)
T PLN02762 481 MIKSGDLVIAVSDLTPSSMLQSIQVRNVP 509 (509)
T ss_pred CCCCCCEEEEEeCCCCCCCceEEEEEEcC
Confidence 99999999999996 999999999986
No 4
>PLN02765 pyruvate kinase
Probab=100.00 E-value=1.3e-133 Score=1069.91 Aligned_cols=487 Identities=46% Similarity=0.746 Sum_probs=448.4
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEecCCCeeEEeecCCCC
Q 010627 15 PKTKIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGILCAVMLDTKGPEIRTGFLKDGK 94 (505)
Q Consensus 15 r~tkIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~GpkiR~g~~~~~~ 94 (505)
|||||||||||+|+++|+|++|+++|||+||||||||++++|.+.++++|++++++++|++||+||||||||+|.+++ +
T Consensus 28 ~~tKIVaTiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~vR~~~~~~~~~vaIl~Dl~GPkIR~g~~~~-~ 106 (526)
T PLN02765 28 ALTKIVGTLGPKSRSVEVIEACLKAGMSVARFDFSWGDAEYHQETLENLKIAVKNTKKLCAVMLDTVGPELQVINKTE-K 106 (526)
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEecCCCCceeeeecCC-C
Confidence 459999999999999999999999999999999999999999999999999999999999999999999999999976 5
Q ss_pred cEEecCCCEEEEEecCCCCCCccEEEecchhhhcccCCCCEEEEeCC--------eEEEEEEEEeeeCCeEEEEEeeCce
Q 010627 95 PIQLKQGQEITISTDYTIKGDENMICMSYKKLAVDVQPGSVILCSDG--------TISFTVLECNVKAGLVKCRCENSAM 166 (505)
Q Consensus 95 ~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~idDG--------~i~l~V~~v~~~~~~i~~~v~~gG~ 166 (505)
++.|++||.++|+.+....++++.+++||++|++.+++||+||+||| +|.|+|++ ++++.+.|+|++||.
T Consensus 107 ~i~l~~G~~~~l~~~~~~~g~~~~i~v~~~~l~~~v~~Gd~IlidDG~~~g~~dg~i~l~V~~--~~~~~v~~~v~~gG~ 184 (526)
T PLN02765 107 PISLKAGNTVTLTPDQSKEASSEVLPINFPGLAKAVKPGDTIFVGQYLFTGSETTSVWLEVDE--VKGDDVVCTVKNSAT 184 (526)
T ss_pred cEecCCCCEEEEecccccCCCCCEEeechHHHHhhcCCCCEEEECCcccccccCceEEEEEEE--EECCEEEEEEEeCcE
Confidence 79999999999998755567888999999999999999999999988 89999995 578999999999999
Q ss_pred ecCC-CCcccCCccccCCCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCC-CceEEEEecCHHHHhc
Q 010627 167 LGER-KNVNLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAK-NILLMSKVENQEGVAN 244 (505)
Q Consensus 167 l~s~-Kgvnlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~-~~~IiakIEt~~av~n 244 (505)
|+++ ||+|+|++.+++|.||++|++||.+|++++++|||++|||++++||.++|++|.+.|. ++.||||||+++|++|
T Consensus 185 L~s~~kgvnlpg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SFVr~a~DI~~~r~~l~~~g~~~~~IiaKIE~~~av~n 264 (526)
T PLN02765 185 LAGSLFTLHVSQVRIDLPTLSEKDKEVISTWGVPNKIDFLSLSYTRHAEDVREAREFLSSLGLSQTQIFAKIENVEGLTH 264 (526)
T ss_pred ECCCccceeCCCCcCCCCCCcHhHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCCCcEEEEECCHHHHHH
Confidence 9995 8999999999999999999999834999999999999999999999999999988775 8999999999999999
Q ss_pred HHHHHhcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCcee
Q 010627 245 FDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCV 324 (505)
Q Consensus 245 ldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~i 324 (505)
|+||++++|||||||||||+|+|+++||.+||+|+++|+++|||||+ |||||||++||+|||||++||||||+||+||+
T Consensus 265 l~eIi~~sDgIMVARGDLGvEip~e~vp~~QK~iI~~c~~~gKPVI~-TQmLeSMi~np~PTRAEvsDVaNAV~DGaDav 343 (526)
T PLN02765 265 FDEILQEADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGADAI 343 (526)
T ss_pred HHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCeEE-ehhhhHHhhCCCCChhhHHHHHHHHHhCCCEE
Confidence 99999999999999999999999999999999999999999999995 99999999999999999999999999999999
Q ss_pred eecccCCCCCCHHHHHHHHHHHHHHHhcccCchhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcCCcEEEEEcCCchHHH
Q 010627 325 MLSGETAAGAYPEVAVRTMAQICVEAESTLDYGDVFKRVMQHSPVPMSPLESLASSAVRTANSARATLILVLTRGGSTAK 404 (505)
Q Consensus 325 mLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~ 404 (505)
|||+|||+|+||+++|++|++||++||++++|...|.......+.+.+..+++|.+|+++|..++|++|++||.||+||+
T Consensus 344 MLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~sav~~A~~l~a~aIvv~T~sG~tAr 423 (526)
T PLN02765 344 LLGAETLRGLYPVETISTVGRICAEAEKVFNQDLYFKKTVKYVGEPMSHLESIASSAVRAAIKVKASVIIVFTSSGRAAR 423 (526)
T ss_pred EecchhcCCCCHHHHHHHHHHHHHHHHhhcchhhhhhhhhcccccCCCHHHHHHHHHHHHHhhCCCCEEEEECCCcHHHH
Confidence 99999999999999999999999999987665444433211111233456899999999999999999999999999999
Q ss_pred HHHhhCCCCcEEEEeecccccCCCCcCCCChhhhhccccccccEEEEeCCCCC-CCCccCHHHHHHHHHHHHHHcCCCCC
Q 010627 405 LVAKYRPGMPILSVVVPEIKTDNFDWSCSNEAPARHSLIFRGLVPVLYAGSAR-ASDAETTEEALEFAIELGKKKGLCKK 483 (505)
Q Consensus 405 ~ls~~RP~~pIiav~~p~~~~t~~~~~~~~~~~aR~L~L~~GV~P~l~~~~~~-~~~~~~~e~~i~~al~~~~~~g~~~~ 483 (505)
++|||||.|||+|+++|.+++.+++|+|+++.++|||+|+|||+|++++.... +.|....+.++..|++++++.|++++
T Consensus 424 ~isk~RP~~pIla~t~~~~~~~~~~~~~~~~~~aR~L~L~~GV~P~~~~~~~~~e~~~~~~~~~~~~a~~~~~~~g~~~~ 503 (526)
T PLN02765 424 LIAKYRPTMPVLSVVIPRLKTNQLKWSFTGAFQARQCLIVRGLFPMLADPRHSAESTSATNESVLKVALDHGKAAGVIKS 503 (526)
T ss_pred HHHhhCCCCCEEEEecCcccccccccccCcHHHHHHhhcccCCEEEEeccccccccccccHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999558888789999999999999999999999998865321 11223368889999999999999999
Q ss_pred CCEEEEEeecCCCceEEEEEcC
Q 010627 484 GDSVVALHRVGTASVIKILNVK 505 (505)
Q Consensus 484 GD~VVvv~g~g~tn~ikI~~v~ 505 (505)
||.||++++.|+||++||..++
T Consensus 504 GD~vvv~~~~g~tn~i~v~~v~ 525 (526)
T PLN02765 504 HDRVVVCQKVGDSSVVKIIELD 525 (526)
T ss_pred CCEEEEEecCCCCceEEEEEcC
Confidence 9999999988999999999875
No 5
>PRK09206 pyruvate kinase; Provisional
Probab=100.00 E-value=2.9e-132 Score=1054.28 Aligned_cols=465 Identities=46% Similarity=0.730 Sum_probs=438.3
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEecCCCeeEEeecCCC
Q 010627 14 KPKTKIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGILCAVMLDTKGPEIRTGFLKDG 93 (505)
Q Consensus 14 ~r~tkIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~GpkiR~g~~~~~ 93 (505)
+|||||||||||+|+++|+|++|+++|||+||||||||++++|.++|+++|++++++++|++|++||||||||+|.++++
T Consensus 1 mr~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~sHg~~~~~~~~i~~vr~~~~~~~~~i~Il~Dl~GPkiR~g~~~~~ 80 (470)
T PRK09206 1 MKKTKIVCTIGPKTESEEMLTKLLDAGMNVMRLNFSHGDYAEHGQRIKNLRNVMSKTGKKAAILLDTKGPEIRTMKLEGG 80 (470)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCCCCceeccccCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CcEEecCCCEEEEEecCCCCCCccEEEecchhhhcccCCCCEEEEeCCeEEEEEEEEeeeCCeEEEEEeeCceecCCCCc
Q 010627 94 KPIQLKQGQEITISTDYTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGERKNV 173 (505)
Q Consensus 94 ~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~~~i~~~v~~gG~l~s~Kgv 173 (505)
+++.|++||.++|+.+....++.+.++++|++|++.+++||.|++|||+|.|+|++ ++++.+.|+|++||.|+++|||
T Consensus 81 ~~i~l~~G~~~~l~~~~~~~~~~~~i~~~~~~~~~~v~~G~~i~idDG~i~l~V~~--~~~~~v~~~v~~~G~l~s~Kgv 158 (470)
T PRK09206 81 NDVSLKAGQTFTFTTDKSVVGNKERVAVTYEGFTADLSVGNTVLVDDGLIGMEVTA--ITGNEVICKVLNNGDLGENKGV 158 (470)
T ss_pred CeeeecCCCEEEEEecCccCCCCCEEEechHHHHhhcCCCCEEEEeCCEEEEEEEE--EeCCEEEEEEEECCEecCCCce
Confidence 56999999999999876566788899999999999999999999999999999995 5788999999999999999999
Q ss_pred ccCCccccCCCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccC-CCceEEEEecCHHHHhcHHHHHhcC
Q 010627 174 NLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHA-KNILLMSKVENQEGVANFDDILANS 252 (505)
Q Consensus 174 nlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~-~~~~IiakIEt~~av~nldeI~~~s 252 (505)
|+|+..+++|+|||||++|| +|++++|+|||++|||++++||+++++++.+.| .++.|||||||++|++|+|||++++
T Consensus 159 n~p~~~~~lp~ltekD~~di-~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeIl~~~ 237 (470)
T PRK09206 159 NLPGVSIALPALAEKDKQDL-IFGCEQGVDFVAASFIRKRSDVLEIREHLKAHGGENIQIISKIENQEGLNNFDEILEAS 237 (470)
T ss_pred eccCcccCCCCCCHHHHHHH-HHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHHHhC
Confidence 99999999999999999999 999999999999999999999999999999887 5899999999999999999999999
Q ss_pred CeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCC
Q 010627 253 DAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAA 332 (505)
Q Consensus 253 DgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~ 332 (505)
|||||||||||+|+|.+++|.+||+|+++|+++|||||+||||||||++||+|||||++||+|||+||+||+|||+|||+
T Consensus 238 DgImVaRGDLgvelg~e~vp~~qk~ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~ETA~ 317 (470)
T PRK09206 238 DGIMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAK 317 (470)
T ss_pred CEEEECcchhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEechhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcccCchhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCCC
Q 010627 333 GAYPEVAVRTMAQICVEAESTLDYGDVFKRVMQHSPVPMSPLESLASSAVRTANSARATLILVLTRGGSTAKLVAKYRPG 412 (505)
Q Consensus 333 G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~ls~~RP~ 412 (505)
|+||+|+|++|++||+++|+.++|. +.... .. ...+..+++|.+|+++|.+++|++|++||.||+||+++|||||.
T Consensus 318 G~yPveaV~~m~~I~~~~E~~~~~~--~~~~~-~~-~~~~~~~~ia~sa~~~A~~l~a~aIv~~T~sG~tA~~is~~RP~ 393 (470)
T PRK09206 318 GKYPLEAVSIMATICERTDRVMNSR--LESNN-DN-RKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARSVRKYFPD 393 (470)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcchh--hhhhc-cc-cCCChHHHHHHHHHHHHhcCCCCEEEEECCCcHHHHHHHhhCCC
Confidence 9999999999999999999865443 11111 01 11245799999999999999999999999999999999999999
Q ss_pred CcEEEEeecccccCCCCcCCCChhhhhccccccccEEEEeCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 010627 413 MPILSVVVPEIKTDNFDWSCSNEAPARHSLIFRGLVPVLYAGSARASDAETTEEALEFAIELGKKKGLCKKGDSVVALHR 492 (505)
Q Consensus 413 ~pIiav~~p~~~~t~~~~~~~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~e~~i~~al~~~~~~g~~~~GD~VVvv~g 492 (505)
+||||+ | ++++++|||+|+|||+|++++. ..+.+++++.+++++++.|++++||.||+++|
T Consensus 394 ~pIia~-------t------~~~~~~r~l~l~~GV~p~~~~~------~~~~~~~~~~a~~~~~~~g~~~~Gd~vvv~~g 454 (470)
T PRK09206 394 ATILAL-------T------TNEKTARQLVLSKGVVPQLVKE------IASTDDFYRLGKELALQSGLAQKGDVVVMVSG 454 (470)
T ss_pred CCEEEE-------C------CCHHHHHHhhcccCcEEEEeCC------CCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeC
Confidence 999999 8 9999999999999999999875 45788999999999999999999999999999
Q ss_pred c----CCCceEEEEEc
Q 010627 493 V----GTASVIKILNV 504 (505)
Q Consensus 493 ~----g~tn~ikI~~v 504 (505)
+ |+||++||+.+
T Consensus 455 ~~~~~g~tn~i~v~~~ 470 (470)
T PRK09206 455 ALVPSGTTNTASVHVL 470 (470)
T ss_pred CCCCCCCCeEEEEEEC
Confidence 5 89999999863
No 6
>PRK06247 pyruvate kinase; Provisional
Probab=100.00 E-value=1.9e-131 Score=1046.95 Aligned_cols=466 Identities=37% Similarity=0.604 Sum_probs=438.1
Q ss_pred cccCCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEecCCCeeEEeec
Q 010627 11 IEKKPKTKIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGILCAVMLDTKGPEIRTGFL 90 (505)
Q Consensus 11 ~~~~r~tkIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~GpkiR~g~~ 90 (505)
|.++|||||||||||+|+++++|++|+++|||+||||||||++++|+++++++|++++++++|++|++||||||||+|.+
T Consensus 1 ~~~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~~~~~i~~vr~~~~~~~~~i~Il~Dl~GpkiR~g~~ 80 (476)
T PRK06247 1 MKRNRRVKILATLGPASSSEDMIRKLVEAGADVFRLNFSHGDHDDHRELYKRIREVEDETGRPIGILADLQGPKLRLGRF 80 (476)
T ss_pred CCCCCCceEEEEECCCcCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCeeEEEeCCCCceecccc
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEecCCCEEEEEecCCCCCCccEEEecchhhhcccCCCCEEEEeCCeEEEEEEEEeeeCCeEEEEEeeCceecCC
Q 010627 91 KDGKPIQLKQGQEITISTDYTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGER 170 (505)
Q Consensus 91 ~~~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~~~i~~~v~~gG~l~s~ 170 (505)
++ +++.|++||.++|+.+ ...++++.+++||++|++++++||.|++|||+|.|+|++ ++++.+.|+|++||.|+++
T Consensus 81 ~~-~~i~l~~G~~~~l~~~-~~~~~~~~i~v~~~~l~~~v~~G~~I~idDG~i~l~V~~--~~~~~i~~~v~~~G~l~~~ 156 (476)
T PRK06247 81 AD-GKVQLANGQTFRLDVD-DAPGDHDRVSLPHPEIAAALKPGDRLLVDDGKVRLVVEA--CDGDDVVCRVVEGGPVSDR 156 (476)
T ss_pred CC-CcEeccCCCEEEEEec-ccCCCCCEeecChhHhHhhcCCCCEEEEeCCeEEEEEEE--EECCEEEEEEEeCcEEcCC
Confidence 76 4699999999999987 356788899999999999999999999999999999995 5889999999999999999
Q ss_pred CCcccCCccccCCCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHh
Q 010627 171 KNVNLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILA 250 (505)
Q Consensus 171 Kgvnlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~ 250 (505)
||+|+|+..+++|.||++|++|| +|++++|+|||++|||++++||+++|++++ .++.||||||+++|++|+|||++
T Consensus 157 Kgvn~p~~~~~~p~ltekD~~di-~f~~~~~vD~ia~SFVr~a~Di~~~r~~l~---~~~~iiaKIEt~eav~nldeI~~ 232 (476)
T PRK06247 157 KGVSLPGTVLSVSALTEKDRADL-EFALELGVDWVALSFVQRPEDVEEVRKIIG---GRVPVMAKIEKPQAIDRLEAIVE 232 (476)
T ss_pred CccccCCcccCCCCCCHHHHHHH-HHHHHcCCCEEEECCCCCHHHHHHHHHHhh---hcCeEEEEECCHHHHHhHHHHHH
Confidence 99999999999999999999999 999999999999999999999999999994 47899999999999999999999
Q ss_pred cCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccC
Q 010627 251 NSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGET 330 (505)
Q Consensus 251 ~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Et 330 (505)
++|||||||||||+++|+++++.+||+|+++|+++|||+|+||||||||++||+|||||++||+|||+||+||+|||+||
T Consensus 233 ~~DgImVaRGDLgve~g~~~v~~~qk~ii~~~~~~gkpvI~ATQmLeSM~~np~PTRAEvtDVaNAV~dG~DavMLS~ET 312 (476)
T PRK06247 233 ASDAIMVARGDLGVEVPLEQVPLIQKRIIRAARRAGKPVVVATQMLESMIENPVPTRAEVSDVATAVLDGADAVMLSAET 312 (476)
T ss_pred HcCEEEEccchhccccCHHHHHHHHHHHHHHHHHhCCCEEEECchHHHhhcCCCCCcchhHHHHHHHHhCCcEEEEcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcccCchhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhC
Q 010627 331 AAGAYPEVAVRTMAQICVEAESTLDYGDVFKRVMQHSPVPMSPLESLASSAVRTANSARATLILVLTRGGSTAKLVAKYR 410 (505)
Q Consensus 331 a~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~ls~~R 410 (505)
|+|+||+++|++|++||+++|++++|...+...... ...+..+++|.+|+++|+.+++++||+||.||+||+++||||
T Consensus 313 A~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~--~~~~~~~~ia~sa~~~A~~l~a~~Iv~~T~sG~ta~~isk~R 390 (476)
T PRK06247 313 ASGKYPVEAVRTMARIIRQVERDPTYPPLIHAQRPQ--PEATKRDAISYAARDIAERLDLAALVAYTSSGDTALRAARER 390 (476)
T ss_pred cCCCCHHHHHHHHHHHHHHHhhccchhhhhhhcccc--cCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCcHHHHHHHhhC
Confidence 999999999999999999999876554333221111 112456899999999999999999999999999999999999
Q ss_pred CCCcEEEEeecccccCCCCcCCCChhhhhccccccccEEEEeCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEE
Q 010627 411 PGMPILSVVVPEIKTDNFDWSCSNEAPARHSLIFRGLVPVLYAGSARASDAETTEEALEFAIELGKKKGLCKKGDSVVAL 490 (505)
Q Consensus 411 P~~pIiav~~p~~~~t~~~~~~~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~e~~i~~al~~~~~~g~~~~GD~VVvv 490 (505)
|+|||+|+ | ++++++|+|+|+|||+|++++. ..+.++++..+++++++.|++++||.||++
T Consensus 391 P~~pI~a~-------t------~~~~~~r~l~l~~GV~p~~~~~------~~~~~~~~~~a~~~~~~~g~~~~Gd~vvv~ 451 (476)
T PRK06247 391 PPLPILAL-------T------PNPETARRLALTWGVHCVVVDD------ARDTDDMVRRADRIALAEGFYKRGDRVVIV 451 (476)
T ss_pred CCCCEEEE-------C------CCHHHHHHhhcccCCeeEecCC------CCCHHHHHHHHHHHHHHcCCCCCCCEEEEE
Confidence 99999999 8 9999999999999999998865 567889999999999999999999999999
Q ss_pred eec-----CCCceEEEEEcC
Q 010627 491 HRV-----GTASVIKILNVK 505 (505)
Q Consensus 491 ~g~-----g~tn~ikI~~v~ 505 (505)
+|+ |+||++||..|+
T Consensus 452 ~g~~~~~~g~tn~i~v~~v~ 471 (476)
T PRK06247 452 AGVPPGTPGSTNMLRIAYIG 471 (476)
T ss_pred eCCCCCCCCCCeEEEEEEeC
Confidence 996 789999999874
No 7
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-131 Score=1041.38 Aligned_cols=469 Identities=49% Similarity=0.736 Sum_probs=440.7
Q ss_pred ccCCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEecCCCeeEEeecC
Q 010627 12 EKKPKTKIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGILCAVMLDTKGPEIRTGFLK 91 (505)
Q Consensus 12 ~~~r~tkIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~GpkiR~g~~~ 91 (505)
.++|||||||||||+|+++++|++|+++||||||+|||||++++|.+.++++|++++++++|++||+||||||||+|.+.
T Consensus 2 ~~~~kTKIVaTiGPas~s~e~l~~li~aG~nV~RlNfSHG~~e~h~~~i~~vR~~~~~~~~~vaIl~DlkGPkIR~g~~~ 81 (477)
T COG0469 2 RMMRKTKIVATLGPATESEEMLEKLIEAGMNVVRLNFSHGDHEEHKKRIDNVREAAEKLGRPVAILLDLKGPKIRTGKFK 81 (477)
T ss_pred CCCccceEEEEECCCCCCHHHHHHHHHccCcEEEEecCCCChHHHHHHHHHHHHHHHHhCCceEEEEcCCCCcceeEecC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEecCCCEEEEEecCC-CCCCccEEEecchhhhcccCCCCEEEEeCCeEEEEEEEEeeeCCeEEEEEeeCceecCC
Q 010627 92 DGKPIQLKQGQEITISTDYT-IKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGER 170 (505)
Q Consensus 92 ~~~~i~l~~G~~v~l~~~~~-~~~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~~~i~~~v~~gG~l~s~ 170 (505)
++ .+.|++||.|+|+++.. ..++.+.++++|++|+++|++|++||+|||+++|+|.+ ++++.++|+|.+||.|++|
T Consensus 82 ~~-~~~l~~G~~~~~~~~~~~~~~~~~~v~v~y~~l~~dV~~G~~iLlDDG~i~l~V~~--v~~~~v~~~v~n~G~l~~~ 158 (477)
T COG0469 82 GG-AVELEKGEKFTLTTDDKVGEGDEERVSVDYKDLAKDVKPGDRILLDDGKIELRVVE--VDGDAVITRVLNGGVLSSN 158 (477)
T ss_pred CC-cEEeecCCEEEEeccccccCCCCcEEeccHHHHHhhcCCCCEEEEeCCeeEEEEEE--eeCCEEEEEEEeCCCccCC
Confidence 84 59999999999998754 24457899999999999999999999999999999995 4777799999999999999
Q ss_pred CCcccCCccccCCCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCC-ceEEEEecCHHHHhcHHHHH
Q 010627 171 KNVNLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKN-ILLMSKVENQEGVANFDDIL 249 (505)
Q Consensus 171 Kgvnlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~-~~IiakIEt~~av~nldeI~ 249 (505)
||||+||..+++|+|||||++|| +|+++.|+|||++|||++++|+.++|+.+.+.+.. ++||||||+++||+|||||+
T Consensus 159 KgvN~pg~~l~~palteKD~~dl-~f~~~~gvD~vA~SFVr~~~Dv~~~R~~l~~~~~~~~~iiaKIE~~eav~NldeIi 237 (477)
T COG0469 159 KGVNLPGVDLSLPALTEKDKEDL-KFGLEQGVDFVALSFVRNAEDVEEVREILAETGGRDVKIIAKIENQEAVDNLDEII 237 (477)
T ss_pred CceecCCCCCCCCCCCccCHHHH-HHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCCCceEEEeecCHHHHhHHHHHH
Confidence 99999999999999999999999 99999999999999999999999999999777654 99999999999999999999
Q ss_pred hcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeeccc
Q 010627 250 ANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGE 329 (505)
Q Consensus 250 ~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~E 329 (505)
++||||||||||||+|+|.++||.+||+|+++||++|||||+||||||||+.||+|||||++||||||+||+||+|||+|
T Consensus 238 ~~SDGIMVARGDLGVEip~e~Vp~~QK~iI~~~~~~gkpVItATQMLeSMi~np~PTRAEvsDVanAvlDGtDAvMLS~E 317 (477)
T COG0469 238 EASDGIMVARGDLGVEIPLEEVPIIQKRIIRKARRAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGE 317 (477)
T ss_pred HhcCceEEEecccccccCHHHhhHHHHHHHHHHHHcCCceEEeeccHHHHhhCCCCCchhhhHHHHHHHhCCceeeechh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcccCchhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhh
Q 010627 330 TAAGAYPEVAVRTMAQICVEAESTLDYGDVFKRVMQHSPVPMSPLESLASSAVRTANSARATLILVLTRGGSTAKLVAKY 409 (505)
Q Consensus 330 ta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~ls~~ 409 (505)
||.|+||+|+|++|++||.++|+.+.+.+++... ..+...+..++++.+++.+|..+++++|+++|.||+||+++|||
T Consensus 318 TA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~--~~~~~~~~~e~ia~aa~~~a~~l~~k~iv~~T~sG~ta~~isk~ 395 (477)
T COG0469 318 TAAGKYPVEAVATMARIAKEAEKELPDNQLLRFR--VDPPDSSITEAIALAAVDIAEKLDAKAIVTLTESGRTARLLSKY 395 (477)
T ss_pred hhcCCCHHHHHHHHHHHHHHHhcccchhhhhhhc--cccccccHHHHHHHHHHHHHHhcCCcEEEEEcCCCHHHHHHhcC
Confidence 9999999999999999999999987643333221 12223356799999999999999999999999999999999999
Q ss_pred CCCCcEEEEeecccccCCCCcCCCChhhhhccccccccEEEEeCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEE
Q 010627 410 RPGMPILSVVVPEIKTDNFDWSCSNEAPARHSLIFRGLVPVLYAGSARASDAETTEEALEFAIELGKKKGLCKKGDSVVA 489 (505)
Q Consensus 410 RP~~pIiav~~p~~~~t~~~~~~~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~e~~i~~al~~~~~~g~~~~GD~VVv 489 (505)
||.+||||+ | ++++++|+|+|+|||+|++++. |..+.+.++..+++.+.+.|+++.||.||+
T Consensus 396 Rp~~pIia~-------t------~~~~v~r~l~l~~GV~p~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~gD~vvi 457 (477)
T COG0469 396 RPEAPIIAL-------T------PNERVARRLALVWGVYPLLVEE-----KPTSTDEMVEEAVEKLLESGLVKKGDLVVI 457 (477)
T ss_pred CCCCcEEEE-------C------CCHHHHhhhceeecceeEEecC-----CCCcHHHHHHHHHHHHHhcCcccCCCEEEE
Confidence 999999999 8 9999999999999999999975 367889999999999999999999999999
Q ss_pred Eeec-----CCCceEEEEEc
Q 010627 490 LHRV-----GTASVIKILNV 504 (505)
Q Consensus 490 v~g~-----g~tn~ikI~~v 504 (505)
++|. |+||++||+.|
T Consensus 458 t~G~~~~~~G~tn~ikv~~v 477 (477)
T COG0469 458 TAGVPMGTVGTTNTIKVLTV 477 (477)
T ss_pred ecCcccccCCCceeEEEEeC
Confidence 9995 88999999875
No 8
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=100.00 E-value=1.4e-129 Score=1039.56 Aligned_cols=474 Identities=54% Similarity=0.853 Sum_probs=444.4
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEecCCCeeEEeecCCC
Q 010627 14 KPKTKIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGILCAVMLDTKGPEIRTGFLKDG 93 (505)
Q Consensus 14 ~r~tkIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~GpkiR~g~~~~~ 93 (505)
+|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|++++++++|++||+||||||||+|.++++
T Consensus 1 ~~~tkIi~TiGp~s~~~e~l~~li~aG~~v~RiN~sHg~~~~~~~~i~~vr~~~~~~~~~i~il~Dl~GpkiR~g~~~~~ 80 (480)
T cd00288 1 LRRTKIVCTIGPATDSVENLKKLIKAGMNVARMNFSHGSHEYHQSRIDNVREAAEKTGGPVAIALDTKGPEIRTGLFKGG 80 (480)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecCCCceeecccCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CcEEecCCCEEEEEecCC-CCCCccEEEecchhhhcccCCCCEEEEeCCeEEEEEEEEeeeCC-eEEEEEeeCceecCCC
Q 010627 94 KPIQLKQGQEITISTDYT-IKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAG-LVKCRCENSAMLGERK 171 (505)
Q Consensus 94 ~~i~l~~G~~v~l~~~~~-~~~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~~-~i~~~v~~gG~l~s~K 171 (505)
+++.|++||.++|+++.. ..|+.+.|++||++|++.+++||.||+|||+|.|+|++ ++++ .++|+|++||.|+++|
T Consensus 81 ~~i~l~~G~~~~lt~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~i~idDG~i~l~V~~--~~~~~~i~~~v~~~G~l~~~k 158 (480)
T cd00288 81 KDISLKAGDKFLVTTDPAAKKGTKEKIYVDYKNLTKDVSPGNTILVDDGLLSLKVLS--KDDDKTLVCEVLNGGVLGSRK 158 (480)
T ss_pred CceecCCCCEEEEEecccccCCCCcEEeechHHhHhhcCCCCEEEEeCCEEEEEEEE--EcCCceEEEEEEeCeEEcCCC
Confidence 479999999999998753 56788899999999999999999999999999999995 4777 8999999999999999
Q ss_pred CcccCCccccCCCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc
Q 010627 172 NVNLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN 251 (505)
Q Consensus 172 gvnlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~ 251 (505)
|||+|+..+++|.||++|++|| +|++++|+|||++|||++++||+++|+++.+.+.++.+|||||+++|++|++||+++
T Consensus 159 gin~p~~~~~~p~ltekD~~di-~f~~~~~vD~ia~SFV~~~~di~~~r~~l~~~~~~~~iiakIEt~~av~nldeI~~~ 237 (480)
T cd00288 159 GVNLPGTDVDLPALSEKDKADL-RFGVEQGVDMIFASFVRKASDVLEIREVLGEKGKDIKIIAKIENQEGVNNFDEILEA 237 (480)
T ss_pred ceEeeCcccCCCCCCHHHHHHH-HHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHh
Confidence 9999999999999999999999 999999999999999999999999999999888899999999999999999999999
Q ss_pred CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCC
Q 010627 252 SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETA 331 (505)
Q Consensus 252 sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta 331 (505)
+|||||||||||+++|.++++.+|++|+++|+++|||+|+||||||||++||+|||||++||||||+||+||+|||+|||
T Consensus 238 ~DgImIargDLg~e~g~~~v~~~qk~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa 317 (480)
T cd00288 238 SDGIMVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETA 317 (480)
T ss_pred cCEEEECcchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcccCchhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCC
Q 010627 332 AGAYPEVAVRTMAQICVEAESTLDYGDVFKRVMQHSPVPMSPLESLASSAVRTANSARATLILVLTRGGSTAKLVAKYRP 411 (505)
Q Consensus 332 ~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~ls~~RP 411 (505)
+|+||+++|++|++||+++|+.++|...+.......+...+..++++.+|+++|.++++++||+||.||+||+++|+|||
T Consensus 318 ~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~sAv~~A~~l~akaIVv~T~SG~TA~~lS~~RP 397 (480)
T cd00288 318 KGKYPVEAVKAMARICLEAEKALSHRVLFNEMRRLTPRPTSTTEAVAMSAVRAAFELGAKAIVVLTTSGRTARLVSKYRP 397 (480)
T ss_pred CCCCHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCChHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHhhCC
Confidence 99999999999999999999876655444322111111224578999999999999999999999999999999999999
Q ss_pred CCcEEEEeecccccCCCCcCCCChhhhhccccccccEEEEeCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEe
Q 010627 412 GMPILSVVVPEIKTDNFDWSCSNEAPARHSLIFRGLVPVLYAGSARASDAETTEEALEFAIELGKKKGLCKKGDSVVALH 491 (505)
Q Consensus 412 ~~pIiav~~p~~~~t~~~~~~~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~e~~i~~al~~~~~~g~~~~GD~VVvv~ 491 (505)
.+||||+ | ++++++|+|+|+|||+|++++.. ...|..+.+++++.+++++++.|++++||.||+++
T Consensus 398 ~~pIiav-------T------~~~~~~r~l~l~~GV~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~gd~vv~~~ 463 (480)
T cd00288 398 NAPIIAV-------T------RNEQTARQLHLYRGVYPVLFEEP-KPGWQEDTDARLKAAVNVAKEKGLLKKGDLVVVVQ 463 (480)
T ss_pred CCCEEEE-------c------CCHHHhhheeeccCcEEEEeccc-ccccCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEe
Confidence 9999999 8 99999999999999999988653 23688899999999999999999999999999999
Q ss_pred ec----CCCceEEEEEc
Q 010627 492 RV----GTASVIKILNV 504 (505)
Q Consensus 492 g~----g~tn~ikI~~v 504 (505)
|+ |+||++||+.+
T Consensus 464 g~~~~~~~tn~i~v~~~ 480 (480)
T cd00288 464 GWPVGSGSTNTMRILTV 480 (480)
T ss_pred CCCCCCCCCeEEEEEEC
Confidence 97 78999999875
No 9
>PRK06354 pyruvate kinase; Provisional
Probab=100.00 E-value=2.2e-129 Score=1058.80 Aligned_cols=467 Identities=44% Similarity=0.687 Sum_probs=440.4
Q ss_pred cCCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEecCCCeeEEeecCC
Q 010627 13 KKPKTKIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGILCAVMLDTKGPEIRTGFLKD 92 (505)
Q Consensus 13 ~~r~tkIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~GpkiR~g~~~~ 92 (505)
.+|||||||||||+|+++|+|++|+++|||+||||||||++++|.++++++|++++++++|++|++||||||||+|.+++
T Consensus 6 ~~r~tKIi~TiGPas~~~e~l~~li~aG~~v~RlN~sHg~~e~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~g~~~~ 85 (590)
T PRK06354 6 LMRRTKIVATIGPASESPEKLRQLIEAGATTARLNFSHGDHEEHGARIKNIREASKKLGKTVGILQDLQGPKIRLGRFED 85 (590)
T ss_pred CCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCceeccccCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCcEEecCCCEEEEEecCCCCCCccEEEecchhhhcccCCCCEEEEeCCeEEEEEEEEeeeCCeEEEEEeeCceecCCCC
Q 010627 93 GKPIQLKQGQEITISTDYTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGERKN 172 (505)
Q Consensus 93 ~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~~~i~~~v~~gG~l~s~Kg 172 (505)
+++.|++||.++|+.+ ...++++.+++||++|++.+++||.||+|||+|.|+|++++.+++.++|+|++||.|+++||
T Consensus 86 -~~i~l~~G~~~~l~~~-~~~~~~~~i~v~~~~l~~~v~~Gd~i~idDG~i~l~V~~~~~~~~~v~~~v~~~g~l~~~Kg 163 (590)
T PRK06354 86 -GPIELKTGDEFILTSR-EVLGTQEKFSVTYDGLADEVPVGSRILLDDGLIELEVEEVDKADGELHCKVLVGGVLSNKKG 163 (590)
T ss_pred -CcEEecCCCEEEEEec-ccCCCCCEEeechHHHHhhcCCCCEEEEeCCeEEEEEEEEEcCCCEEEEEEEeCeEECCCCc
Confidence 4699999999999987 35678889999999999999999999999999999999765458999999999999999999
Q ss_pred cccCCccccCCCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhc-cCCCceEEEEecCHHHHhcHHHHHhc
Q 010627 173 VNLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGG-HAKNILLMSKVENQEGVANFDDILAN 251 (505)
Q Consensus 173 vnlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~-~~~~~~IiakIEt~~av~nldeI~~~ 251 (505)
||+|+..+++|.|||+|++|| +|++++++|||++|||++++||.++++++.+ .+.++.|||||||++|++|+|||+++
T Consensus 164 vn~p~~~~~~p~ltekD~~di-~f~~~~~vD~ia~SFVr~~~dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeI~~~ 242 (590)
T PRK06354 164 VNFPGVSLSLPAITEKDREDL-IFGLEQGVDWIALSFVRNPSDVLEIRELIEEHNGKHIPIIAKIEKQEAIDNIDAILEL 242 (590)
T ss_pred ccccCCccCCCCCCHHHHHHH-HHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHh
Confidence 999999999999999999999 9999999999999999999999999999954 57789999999999999999999999
Q ss_pred CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCC
Q 010627 252 SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETA 331 (505)
Q Consensus 252 sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta 331 (505)
+|||||||||||+++|.+++|.+|++|+++|+++|||||+||||||||++||+|||||++||||||+||+||+|||+|||
T Consensus 243 ~DgImVaRGDLgve~g~e~v~~~qk~ii~~~~~~gkpvI~ATqmLeSM~~~p~PTRAEvsDVaNav~DG~DavMLS~ETA 322 (590)
T PRK06354 243 CDGLMVARGDLGVEIPAEEVPLLQKRLIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVANAILDGTDAVMLSNETA 322 (590)
T ss_pred cCEEEEccchhhcccCcHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcccCchhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCC
Q 010627 332 AGAYPEVAVRTMAQICVEAESTLDYGDVFKRVMQHSPVPMSPLESLASSAVRTANSARATLILVLTRGGSTAKLVAKYRP 411 (505)
Q Consensus 332 ~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~ls~~RP 411 (505)
+|+||++||++|++||+++|+.++|..+|.+.... ..+..+++|.+|+++|.+++|++|++||.||+||+++|||||
T Consensus 323 ~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~---~~~~~~~ia~aa~~~a~~~~a~~Iv~~T~sG~ta~~vsk~Rp 399 (590)
T PRK06354 323 AGDYPVEAVQTMATIAVRIEKDLPYRDILSKRPEF---TTTITNAISQAVSHIALQLDAAAIVTLTKSGATARNVSKYRP 399 (590)
T ss_pred CCCCHHHHHHHHHHHHHHHHhccchhhhhhhcccc---CCCHHHHHHHHHHHHHhhcCCCEEEEECCChHHHHHHHhhCC
Confidence 99999999999999999999977665444332111 234568999999999999999999999999999999999999
Q ss_pred CCcEEEEeecccccCCCCcCCCChhhhhccccccccEEEEeCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEe
Q 010627 412 GMPILSVVVPEIKTDNFDWSCSNEAPARHSLIFRGLVPVLYAGSARASDAETTEEALEFAIELGKKKGLCKKGDSVVALH 491 (505)
Q Consensus 412 ~~pIiav~~p~~~~t~~~~~~~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~e~~i~~al~~~~~~g~~~~GD~VVvv~ 491 (505)
.|||||+ | ++++++|||+|+|||+|++++. ..+.+.+++.+++++++.|++++||.||+++
T Consensus 400 ~~pI~a~-------t------~~~~~~r~l~l~~GV~p~~~~~------~~~~~~~~~~~~~~~~~~g~~~~gd~vv~~~ 460 (590)
T PRK06354 400 KTPILAV-------T------PNESVARRLQLVWGVTPLLVLD------APSTDETFDAAINVAQESGLLKQGDLVVITA 460 (590)
T ss_pred CCCEEEE-------C------CCHHHHHHhhcccCcEEEEeCC------CCCHHHHHHHHHHHHHHcCCCCCCCEEEEEe
Confidence 9999999 8 9999999999999999999876 4568899999999999999999999999999
Q ss_pred ec-----CCCceEEEEEc
Q 010627 492 RV-----GTASVIKILNV 504 (505)
Q Consensus 492 g~-----g~tn~ikI~~v 504 (505)
|. |+||++||+.+
T Consensus 461 g~~~~~~g~tn~~~v~~v 478 (590)
T PRK06354 461 GTLVGESGSTDLMKVHVV 478 (590)
T ss_pred CCCCCcCCCceeEEEEEe
Confidence 95 79999999986
No 10
>PRK05826 pyruvate kinase; Provisional
Probab=100.00 E-value=1e-126 Score=1014.00 Aligned_cols=454 Identities=46% Similarity=0.678 Sum_probs=430.2
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEecCCCeeEEeecCCC
Q 010627 14 KPKTKIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGILCAVMLDTKGPEIRTGFLKDG 93 (505)
Q Consensus 14 ~r~tkIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~GpkiR~g~~~~~ 93 (505)
+|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|++++++++|++|++||||||||+|.+.+
T Consensus 3 ~~~tkIi~TiGp~s~~~e~l~~li~~G~~v~RiN~sHg~~~~~~~~i~~ir~~~~~~~~~i~I~~Dl~GpkiR~g~~~~- 81 (465)
T PRK05826 3 LRRTKIVATLGPASDSPENLEKLIEAGVNVVRLNFSHGSHEEHGKRAALVREIAAKLGRPVAILLDLKGPKIRVGKFKE- 81 (465)
T ss_pred CCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCceeeccccC-
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CcEEecCCCEEEEEecCCCCCCccEEEecchhhhcccCCCCEEEEeCCeEEEEEEEEeeeCCeEEEEEeeCceecCCCCc
Q 010627 94 KPIQLKQGQEITISTDYTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGERKNV 173 (505)
Q Consensus 94 ~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~~~i~~~v~~gG~l~s~Kgv 173 (505)
+++.|++|+.|+|+.++...++++.|++||++|++++++||.||+|||+|.|+|++ ++++.++|+|++||.|+++|||
T Consensus 82 ~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~ilidDG~i~l~V~~--~~~~~v~~~v~~~g~l~s~kgv 159 (465)
T PRK05826 82 GKITLKTGDKFTLDTDQKEEGDKERVGVDYKGLPKDVKPGDILLLDDGKLQLKVVE--VDGDEVETEVKNGGPLSNNKGI 159 (465)
T ss_pred CcEEecCCCEEEEEeccccCCCCCEEEechHHhHhhcCCCCEEEEeCCeEEEEEEE--EeCCEEEEEEEeCcEecCCcee
Confidence 46999999999999886567888999999999999999999999999999999995 5888999999999999999999
Q ss_pred ccCCccccCCCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCC-CceEEEEecCHHHHhcHHHHHhcC
Q 010627 174 NLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAK-NILLMSKVENQEGVANFDDILANS 252 (505)
Q Consensus 174 nlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~-~~~IiakIEt~~av~nldeI~~~s 252 (505)
|+|++.+++|.||++|.++| +|++++|+|+|++|||++++|++++++++.+.|. ++.||||||+++|++|+|||++++
T Consensus 160 nlp~~~~~lp~lte~D~~~i-~~ald~g~d~I~~sfV~saedv~~l~~~l~~~~~~~~~iiakIEt~eav~nldeI~~~~ 238 (465)
T PRK05826 160 NIPGGGLSLPALTEKDKADI-KFAAEQGVDYIAVSFVRSAEDVEEARRLLREAGCPHAKIIAKIERAEAVDNIDEIIEAS 238 (465)
T ss_pred eccCcccCCCCCChhhHHHH-HHHHHCCCCEEEECCCCCHHHHHHHHHHHHHcCCcCceEEEEEcCHHHHHhHHHHHHHc
Confidence 99999999999999999999 9999999999999999999999999999999888 899999999999999999999999
Q ss_pred CeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCC
Q 010627 253 DAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAA 332 (505)
Q Consensus 253 DgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~ 332 (505)
|||||||||||+++|.++++.+|++|+++|+++|||+|+||||||||++||+|||||++||+|||+||+||+|||+|||+
T Consensus 239 DgImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~ 318 (465)
T PRK05826 239 DGIMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAA 318 (465)
T ss_pred CEEEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcccCchhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcC-CcEEEEEcCCchHHHHHHhhCC
Q 010627 333 GAYPEVAVRTMAQICVEAESTLDYGDVFKRVMQHSPVPMSPLESLASSAVRTANSAR-ATLILVLTRGGSTAKLVAKYRP 411 (505)
Q Consensus 333 G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~-a~~Ivv~T~sG~ta~~ls~~RP 411 (505)
|+||+++|++|++||+++|+.++|...+..+ .....+..+++|.+|+++|.+++ |++||+||.||+||+++|||||
T Consensus 319 G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~---~~~~~~~~~~ia~aa~~~a~~l~~a~~Ivv~T~sG~ta~~isk~RP 395 (465)
T PRK05826 319 GKYPVEAVEAMARICKGAEKEFSINLSKHRL---DRQFDRIDEAIAMSAMYAANHLKGVKAIVALTESGRTARLISRFRP 395 (465)
T ss_pred CcCHHHHHHHHHHHHHHHHhccchhhhhhhc---cccccchHHHHHHHHHHHHHhcCCCCEEEEECCCcHHHHHHHhhCC
Confidence 9999999999999999999876653222211 11113567999999999999999 9999999999999999999999
Q ss_pred CCcEEEEeecccccCCCCcCCCChhhhhccccccccEEEEeCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEe
Q 010627 412 GMPILSVVVPEIKTDNFDWSCSNEAPARHSLIFRGLVPVLYAGSARASDAETTEEALEFAIELGKKKGLCKKGDSVVALH 491 (505)
Q Consensus 412 ~~pIiav~~p~~~~t~~~~~~~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~e~~i~~al~~~~~~g~~~~GD~VVvv~ 491 (505)
.||||++ | ++++++|||+|+|||+|++++. ..+.+.+++.|++++++.|++++||.||+++
T Consensus 396 ~~pI~~~-------t------~~~~~~r~l~l~~GV~p~~~~~------~~~~~~~~~~a~~~~~~~g~~~~gd~vvvv~ 456 (465)
T PRK05826 396 GAPIFAV-------T------RDEKTQRRLALYRGVYPVLFDS------AADTDDAAEEALRLLLEKGLVESGDLVVVTS 456 (465)
T ss_pred CCCEEEE-------c------CCHHHHHHhhcccCcEEEEeCC------CCCHHHHHHHHHHHHHHcCCCCCCCEEEEEe
Confidence 9999999 8 9999999999999999999875 4578899999999999999999999999999
Q ss_pred ec
Q 010627 492 RV 493 (505)
Q Consensus 492 g~ 493 (505)
|.
T Consensus 457 g~ 458 (465)
T PRK05826 457 GD 458 (465)
T ss_pred CC
Confidence 97
No 11
>PLN02623 pyruvate kinase
Probab=100.00 E-value=1.5e-123 Score=999.21 Aligned_cols=465 Identities=37% Similarity=0.598 Sum_probs=435.8
Q ss_pred ccCCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHc-CCeeEEEEecCCCeeEEeec
Q 010627 12 EKKPKTKIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNT-GILCAVMLDTKGPEIRTGFL 90 (505)
Q Consensus 12 ~~~r~tkIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~-~~~v~i~~Dl~GpkiR~g~~ 90 (505)
..+|||||||||||+|+++|+|++|+++|||+||||||||++++|++.|+++|+++++. ++|++|++||||||||+|.+
T Consensus 107 ~~~rkTKIV~TiGPas~s~e~l~~li~aGmnv~RlNfSHg~~e~h~~~i~~vr~~~~~~~~~~iaIl~Dl~GPkIRig~~ 186 (581)
T PLN02623 107 SVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDL 186 (581)
T ss_pred CCCCCCeEEEEeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCceecccC
Confidence 45789999999999999999999999999999999999999999999999999999986 48999999999999999999
Q ss_pred CCCCcEEecCCCEEEEEecCCCCCCccEEEecchhhhcccCCCCEEEEeCCeEEEEEEEEeeeCCeEEEEEeeCceecCC
Q 010627 91 KDGKPIQLKQGQEITISTDYTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGER 170 (505)
Q Consensus 91 ~~~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~~~i~~~v~~gG~l~s~ 170 (505)
.+ ++.|++||.|+|+.+. ..|+++.+++||++|++++++||.||+|||+|.|+|++ ++++.+.|+|++||.|+++
T Consensus 187 ~~--~i~l~~G~~v~lt~~~-~~g~~~~i~v~y~~l~~~v~~Gd~IlidDG~i~l~V~~--~~~~~v~~~V~~gG~L~s~ 261 (581)
T PLN02623 187 PQ--PIMLEEGQEFTFTIKR-GVSTEDCVSVNYDDFVNDVEVGDMLLVDGGMMSLAVKS--KTSDSVKCEVVDGGELKSR 261 (581)
T ss_pred CC--CEEecCCCEEEEecCc-cCCCCCEEeechHHHHhhCCCCCEEEEeCCeEEEEEEE--EECCEEEEEEEeceEecCC
Confidence 75 6999999999999863 46788899999999999999999999999999999995 5789999999999999999
Q ss_pred CCcccCCccccCCCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHh
Q 010627 171 KNVNLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILA 250 (505)
Q Consensus 171 Kgvnlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~ 250 (505)
||||+||+.+++|.|||||++|| +|++++|+|||++|||++++||+++++++...|.++.|||||||++|++|+|||++
T Consensus 262 KgvNlpg~~~~lp~lTekD~~di-~f~~~~~vD~ialSFVr~a~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~ 340 (581)
T PLN02623 262 RHLNVRGKSATLPSITEKDWEDI-KFGVENKVDFYAVSFVKDAQVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIT 340 (581)
T ss_pred CCCCCCCCcCCCCCCCHHHHHHH-HHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHH
Confidence 99999999999999999999999 99999999999999999999999999999998999999999999999999999999
Q ss_pred cCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccC
Q 010627 251 NSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGET 330 (505)
Q Consensus 251 ~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Et 330 (505)
.+|||||||||||+++|+++++.+|++|+++|+++|||+|+||||||||+.+|.|||||++|++|++.+|+|++|||+||
T Consensus 341 g~DgImIgrgDLgvelg~~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Et 420 (581)
T PLN02623 341 ASDGAMVARGDLGAELPIEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGET 420 (581)
T ss_pred hCCEEEECcchhhhhcCcHHHHHHHHHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcccCchhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhC
Q 010627 331 AAGAYPEVAVRTMAQICVEAESTLDYGDVFKRVMQHSPVPMSPLESLASSAVRTANSARATLILVLTRGGSTAKLVAKYR 410 (505)
Q Consensus 331 a~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~ls~~R 410 (505)
+.|+||+++|++|++||+++|+++++...+..+... .+.+..+++|.+|+++|+.++++ ||+||+||+||+++||||
T Consensus 421 a~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~--~~~~~~~~ia~sA~~~A~~l~a~-Ivv~T~sG~tA~~lSr~R 497 (581)
T PLN02623 421 AHGKFPLKAVKVMHTVALRTEATLPEGTTPPNLGQA--FKNHMSEMFAFHATMMANTLGTS-IIVFTRTGFMAILLSHYR 497 (581)
T ss_pred hcCcCHHHHHHHHHHHHHHHHhhcccchhhhhhccc--cCCChHHHHHHHHHHHHHhcCCc-EEEECCCcHHHHHHHhhC
Confidence 999999999999999999999876543222211111 12245689999999999999999 999999999999999999
Q ss_pred CCCcEEEEeecccccCCCCcCCCChhhhhccccccccEEEEeCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEE
Q 010627 411 PGMPILSVVVPEIKTDNFDWSCSNEAPARHSLIFRGLVPVLYAGSARASDAETTEEALEFAIELGKKKGLCKKGDSVVAL 490 (505)
Q Consensus 411 P~~pIiav~~p~~~~t~~~~~~~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~e~~i~~al~~~~~~g~~~~GD~VVvv 490 (505)
|.|||||+ | +++.++|||+|+|||+|++++. ..+.+++++.|++++++.|++++||.||++
T Consensus 498 P~~pI~av-------T------~~~~~aR~L~L~~GV~P~~~~~------~~~~e~~i~~a~~~~~~~g~v~~GD~vviv 558 (581)
T PLN02623 498 PSGTIFAF-------T------NEKRIQQRLALYQGVCPIYMQF------SDDAEETFARALSLLLNKGMVKEGEEVALV 558 (581)
T ss_pred CCCCEEEE-------C------CCHHHHHHhhcccccEEEecCC------CCCHHHHHHHHHHHHHHcCCCCCCCEEEEE
Confidence 99999999 8 9999999999999999998864 567889999999999999999999999999
Q ss_pred ee-----c--CCCceEEEEEc
Q 010627 491 HR-----V--GTASVIKILNV 504 (505)
Q Consensus 491 ~g-----~--g~tn~ikI~~v 504 (505)
+| + |+||++||+.|
T Consensus 559 ~g~~~p~~~~g~tn~i~V~~v 579 (581)
T PLN02623 559 QSGRQPIWRSESTHHIQVRKV 579 (581)
T ss_pred eccCCCCCCCCCCeEEEEEEe
Confidence 86 1 78999999886
No 12
>PTZ00300 pyruvate kinase; Provisional
Probab=100.00 E-value=8.8e-122 Score=970.65 Aligned_cols=446 Identities=44% Similarity=0.740 Sum_probs=412.7
Q ss_pred CcEEEEecCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEecCCCeeEEeecCCCCcEEecCCCEEEEEecC--CCCCCccE
Q 010627 41 MNVARFNFSHGSHEYHQETLNNLRTAMVNTGILCAVMLDTKGPEIRTGFLKDGKPIQLKQGQEITISTDY--TIKGDENM 118 (505)
Q Consensus 41 ~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~GpkiR~g~~~~~~~i~l~~G~~v~l~~~~--~~~~~~~~ 118 (505)
||+||||||||++++|+++++++|+++++.|++++||+||||||||||.++++ ++.|++||+++|+.+. ...++++.
T Consensus 1 ~~v~RlN~sHg~~e~h~~~i~~vr~~~~~~~~~i~il~Dl~GPkiR~g~~~~~-~~~l~~G~~~~l~~~~~~~~~~~~~~ 79 (454)
T PTZ00300 1 MSVARMNFSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPEIRTGLFVGG-EAVMERGATCYVTTDPAFADKGTKDK 79 (454)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecCCCceeccccCCC-cEEecCCCEEEEEeccccccCCCCCE
Confidence 79999999999999999999999999999999999999999999999999764 5999999999999873 34678889
Q ss_pred EEecchhhhcccCCCCEEEEeCCeEEEEEEEEeeeC-CeEEEEEeeCceecCCCCcccCCccccCCCCChhcHHHHHhcc
Q 010627 119 ICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKA-GLVKCRCENSAMLGERKNVNLPGVIVDLPTLTEKDKEDILKWG 197 (505)
Q Consensus 119 i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~-~~i~~~v~~gG~l~s~Kgvnlp~~~~~l~~lte~D~~di~~~a 197 (505)
+++||++|++.+++||.||+|||+|.|+|.++ ++ +.+.|+|++||.|+++||||+||..+++|.++++|.++| +|+
T Consensus 80 i~v~~~~l~~~v~~G~~ilidDG~i~l~V~~~--~~~~~v~~~v~~gG~l~~~kgvnlp~~~~~l~~ltekD~~dI-~~a 156 (454)
T PTZ00300 80 FYIDYQNLSKVVRPGGYIYIDDGILILHVQSH--EDEQTLKCTVTNAHTISDRRGVNLPGCDVDLPAVSAKDCADL-QFG 156 (454)
T ss_pred EEecCcccccccCCCCEEEEeCCeEEEEEEEE--cCCceEEEEEecCcEecCCCccccCCCccCCCCCChhhHHHH-HHH
Confidence 99999999999999999999999999999954 54 699999999999999999999999999999999999999 999
Q ss_pred cccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCchhHHHHHHH
Q 010627 198 IPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKV 277 (505)
Q Consensus 198 l~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~ 277 (505)
+++|+|||++|||++++|+++++++++..|.++.||||||+++|++|||||++.+|||||||||||+|+|.+++|.+||+
T Consensus 157 ld~gvd~I~~SfVrsaeDv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~~~~DgImVaRGDLgvei~~e~vp~~Qk~ 236 (454)
T PTZ00300 157 VEQGVDMIFASFIRSAEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKI 236 (454)
T ss_pred HHCCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhCCEEEEecchhhhhcChHHHHHHHHH
Confidence 99999999999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCch
Q 010627 278 MIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDYG 357 (505)
Q Consensus 278 Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~ 357 (505)
|+++|+++|||+|+||||||||++||+|||||++||||||+||+||+|||+|||+|+||+++|++|++||++||+.+++.
T Consensus 237 Ii~~~~~~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~ 316 (454)
T PTZ00300 237 LISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSAVNEY 316 (454)
T ss_pred HHHHHHHcCCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhhhchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999865433
Q ss_pred hhHHhhhhCCCCCCCchhhHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCCCCcEEEEeecccccCCCCcCCCChhh
Q 010627 358 DVFKRVMQHSPVPMSPLESLASSAVRTANSARATLILVLTRGGSTAKLVAKYRPGMPILSVVVPEIKTDNFDWSCSNEAP 437 (505)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~ls~~RP~~pIiav~~p~~~~t~~~~~~~~~~~ 437 (505)
..|.......+.+.+..+++|.+|+++|.+++|++|++||.||+||+++|||||.|||||+ | +++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~ia~sa~~~a~~l~a~aIiv~T~sG~tA~~vs~~RP~~pIia~-------t------~~~~~ 383 (454)
T PTZ00300 317 VFFNSIKKLQPIPMSAEEAVCSSAVNSVYETKAKALVVLSNTGRSARLVAKYRPNCPIVCV-------T------TRLQT 383 (454)
T ss_pred hhhhhhhccccCCCChHHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEE-------C------CCHHH
Confidence 3343322222222345789999999999999999999999999999999999999999999 8 99999
Q ss_pred hhccccccccEEEEeCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEeec----CCCceEEEEEc
Q 010627 438 ARHSLIFRGLVPVLYAGSARASDAETTEEALEFAIELGKKKGLCKKGDSVVALHRV----GTASVIKILNV 504 (505)
Q Consensus 438 aR~L~L~~GV~P~l~~~~~~~~~~~~~e~~i~~al~~~~~~g~~~~GD~VVvv~g~----g~tn~ikI~~v 504 (505)
+|||+|+|||+|++++.. ......+.+++++.+++++++.|++++||.||+++|+ |+||++||+.|
T Consensus 384 ar~l~l~~GV~p~~~~~~-~~~~~~~~~~~~~~a~~~~~~~g~~~~gd~vvi~~g~~~~~g~tn~i~v~~~ 453 (454)
T PTZ00300 384 CRQLNITQGVESVFFDAE-RLGHDEGKEQRVAMGVGFAKSKGYVQSGDLMVVVHADHKVKGYANQTRIILV 453 (454)
T ss_pred HHHhhcccCcEEEEeccc-cccccCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCCCEEEEEEe
Confidence 999999999999988641 1011346789999999999999999999999999996 89999999987
No 13
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=100.00 E-value=3e-120 Score=971.50 Aligned_cols=465 Identities=51% Similarity=0.789 Sum_probs=434.6
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEecCCCeeEEeecCCCC
Q 010627 15 PKTKIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGILCAVMLDTKGPEIRTGFLKDGK 94 (505)
Q Consensus 15 r~tkIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~GpkiR~g~~~~~~ 94 (505)
||||||||+||+|+++|+|++|+++|||+||||||||++++|+++|+++|+++++++++++|++||||||||+|.+.+ +
T Consensus 1 ~~tkii~Tigp~~~~~e~l~~l~~~G~~~~R~N~shg~~~~~~~~i~~ir~~~~~~~~~~~i~~Dl~GpkiR~g~~~~-~ 79 (473)
T TIGR01064 1 RRTKIVCTIGPATNSPEMLKKLLDAGMNVARLNFSHGSHEEHGKRIENVREAAEKLGRPVAILLDTKGPEIRTGEIKG-G 79 (473)
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCceeccccCC-C
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999976 4
Q ss_pred cEEecCCCEEEEEecC-CCCCCccEEEecchhhhcccCCCCEEEEeCCeEEEEEEEEeeeCCeEEEEEeeCceecCCCCc
Q 010627 95 PIQLKQGQEITISTDY-TIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGERKNV 173 (505)
Q Consensus 95 ~i~l~~G~~v~l~~~~-~~~~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~~~i~~~v~~gG~l~s~Kgv 173 (505)
++.|++||.|+|+.+. ...++++.|++||++|++.+++||.||+|||+|.|+|++ ++++.++|+|++||.|+++|||
T Consensus 80 ~~~l~~g~~v~l~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~i~iddG~i~l~V~~--~~~~~~~~~v~~~g~l~~~kgv 157 (473)
T TIGR01064 80 PVKLKKGDKVIITTDDIKGEGDEEDVSVDYKGLTKDVSEGDKILVDDGKISLVVVS--VEGDKVICEVLNGGTLKSKKGV 157 (473)
T ss_pred ceecCCCCEEEEecccccCCCCCCEEEechHHHHHhcCCCCEEEEeCCeEEEEEEE--EECCEEEEEEEeCcEEcCCcee
Confidence 6999999999999874 345788899999999999999999999999999999994 5889999999999999999999
Q ss_pred ccCCccccCCCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccC-CCceEEEEecCHHHHhcHHHHHhcC
Q 010627 174 NLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHA-KNILLMSKVENQEGVANFDDILANS 252 (505)
Q Consensus 174 nlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~-~~~~IiakIEt~~av~nldeI~~~s 252 (505)
|+|+..+++|.||++|.+|| +++++.|+|+|++|||++++||+.+++++.+.+ .++.|+|||||++|++|++||++++
T Consensus 158 n~p~~~~~~~~ltekD~~Dl-~~~~~~~~d~I~lskV~sa~dv~~l~~~l~~~~~~~~~Iia~IEt~~av~nl~eI~~~~ 236 (473)
T TIGR01064 158 NLPGADVDLPALSEKDKKDL-KFGVEQGVDMVAASFVRTAEDVLEVREVLGEKGAKDVKIIAKIENQEGVDNIDEIAEAS 236 (473)
T ss_pred ecCCCccCCCCCCHHHHHHH-HHHHHCCCCEEEECCCCCHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHhHHHHHhhC
Confidence 99999999999999999999 999999999999999999999999999998877 5899999999999999999999999
Q ss_pred CeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCC
Q 010627 253 DAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAA 332 (505)
Q Consensus 253 DgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~ 332 (505)
||+|+|||||++++|.++++.+|++|+.+|+++|||+|+||||||||+.||+|||||++|++|++.+|+|++|||+||+.
T Consensus 237 dgi~iG~gDL~~~lg~~~l~~~~~~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~ 316 (473)
T TIGR01064 237 DGIMVARGDLGVEIPAEEVPIAQKKMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAK 316 (473)
T ss_pred CcEEEchHHHHhhcCcHHHHHHHHHHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcccCchhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCCC
Q 010627 333 GAYPEVAVRTMAQICVEAESTLDYGDVFKRVMQHSPVPMSPLESLASSAVRTANSARATLILVLTRGGSTAKLVAKYRPG 412 (505)
Q Consensus 333 G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~ls~~RP~ 412 (505)
|+||+|+|++|++||+++|+.++|...|...........+..+++|.+|+++|..++|++||+||.||+||+++|||||.
T Consensus 317 G~yP~~~v~~m~~I~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~~akaIVv~T~SG~TA~~vSr~rp~ 396 (473)
T TIGR01064 317 GKYPVEAVKMMAKIAKEAEKALAYLTNFNDRKNSDPKPSTITEAIALSAVEAAEKLDAKAIVVLTESGRTARLLSKYRPN 396 (473)
T ss_pred CCCHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCEEEEEcCChHHHHHHHhhCCC
Confidence 99999999999999999998765544443321101112346789999999999999999999999999999999999999
Q ss_pred CcEEEEeecccccCCCCcCCCChhhhhccccccccEEEEeCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 010627 413 MPILSVVVPEIKTDNFDWSCSNEAPARHSLIFRGLVPVLYAGSARASDAETTEEALEFAIELGKKKGLCKKGDSVVALHR 492 (505)
Q Consensus 413 ~pIiav~~p~~~~t~~~~~~~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~e~~i~~al~~~~~~g~~~~GD~VVvv~g 492 (505)
+||||+ | +++.++|+|+|+|||+|++++. |..+.+++++.+++++++.|++++||.||+++|
T Consensus 397 ~PIiAv-------T------~~~~v~R~L~L~wGV~Pil~~~-----~~~~~~~~i~~a~~~l~~~gl~~~GD~VVvv~g 458 (473)
T TIGR01064 397 APIIAV-------T------PNERVARQLALYWGVFPFLVDE-----EPSDTEARVNKALELLKEKGILKKGDLVVVIQG 458 (473)
T ss_pred CCEEEE-------c------CCHHHHHHhhccCCcEEEEeCC-----CCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEec
Confidence 999999 8 9999999999999999998875 245678899999999999999999999999999
Q ss_pred c------CCCceEEE
Q 010627 493 V------GTASVIKI 501 (505)
Q Consensus 493 ~------g~tn~ikI 501 (505)
+ |+||+|||
T Consensus 459 ~~~~~~~~~~n~i~v 473 (473)
T TIGR01064 459 GAPIGGVGGTNTIRV 473 (473)
T ss_pred CCCCCCCCCCeEEeC
Confidence 3 78999885
No 14
>KOG2323 consensus Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-119 Score=944.96 Aligned_cols=485 Identities=61% Similarity=0.939 Sum_probs=461.6
Q ss_pred CCCCCc---ccccCCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCCe-eEEEEe
Q 010627 4 NCGVST---AIEKKPKTKIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGIL-CAVMLD 79 (505)
Q Consensus 4 ~~~~~~---~~~~~r~tkIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~~-v~i~~D 79 (505)
.|.++. +....|+|||+||+||++++.|+|++|+++|||++|+|||||++++|++.++++|++...++.+ ++|++|
T Consensus 7 ~~~L~~~~~~~~~~~~t~ivctigP~s~s~e~l~~m~~aGmniarlNfShGs~~~h~~tidn~~~a~~~~~~~~~ai~LD 86 (501)
T KOG2323|consen 7 ECLLSGSNGAPKKRRKTKIVCTIGPASRSVEMLRKLLKAGMNIARLNFSHGSHEYHQETIDNLRDAISNTGALPCAIMLD 86 (501)
T ss_pred hhhhcccccccccccceeeEeccCCccchHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHHHHHhhcCCcchhhhhc
Confidence 455553 2234689999999999999999999999999999999999999999999999999999988765 999999
Q ss_pred cCCCeeEEeecCCCCcEEecCCCEEEEEecCCCCC-CccEEEecchhhhcccCCCCEEEEeCCeEEEEEEEEeeeCCeEE
Q 010627 80 TKGPEIRTGFLKDGKPIQLKQGQEITISTDYTIKG-DENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVK 158 (505)
Q Consensus 80 l~GpkiR~g~~~~~~~i~l~~G~~v~l~~~~~~~~-~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~~~i~ 158 (505)
++||++|||.+.++.+++|++|+.++||+|+.... ..+++++||+++.++|++||.||+|||.+.+.|.++ ..+.+.
T Consensus 87 tkGpEirtg~~~~~~~i~L~~G~~i~~t~d~~~~~~~~~~~~vdyk~~~~~V~~G~~i~vddgi~s~~V~~~--~~~~~~ 164 (501)
T KOG2323|consen 87 TKGPEIRTGDLKNGKPIKLKEGQEITITTDYSYEAKLSETISVDYKKLAKDVKPGDIIYVDDGLISLIVKSV--SKDEVT 164 (501)
T ss_pred cCCCeEeecccCCCCceeecCCCEEEEEcChhhccccceEEEeehHHhhhccccCCEEEECCceeeeEEEEe--ecCceE
Confidence 99999999999988889999999999999954433 478999999999999999999999999999999975 556999
Q ss_pred EEEeeCceecCCCC-cccCCccccCCCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEec
Q 010627 159 CRCENSAMLGERKN-VNLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVE 237 (505)
Q Consensus 159 ~~v~~gG~l~s~Kg-vnlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIE 237 (505)
|+|+|+|.++|+|+ +|+||+..++|.|+|+|.+|| +|++++++|+|++||||.++|+.++|++|++.+++++||+|||
T Consensus 165 c~v~n~g~l~s~k~~vnlpg~~vdlp~ltekd~~dl-~fGven~vd~i~~SfIR~a~dv~~iR~~Lg~~g~~ikiisKIE 243 (501)
T KOG2323|consen 165 CRVENGGMLGSRKGNVNLPGTHVDLPALTEKDEKDL-KFGVENKVDMIFASFIRKASDVREVRKVLGESGKNIKLISKIE 243 (501)
T ss_pred EEEecCcccccccCcccCCCccccCCccChhhHHHH-hcCCCCCCCEEEeeeeeehHHHHHHHHHhCccCCcceEEEEec
Confidence 99999999999999 999999999999999999999 9999999999999999999999999999998899999999999
Q ss_pred CHHHHhcHHHHHhcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHH
Q 010627 238 NQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAV 317 (505)
Q Consensus 238 t~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav 317 (505)
+++|+.|+|||+..+||+||+|||||+|+|+|+++.+||.+|.+|+.+|||||+||||||||+.+|+|||||++||+|||
T Consensus 244 n~~g~~nfDeIl~~sDg~MvarGdlGieip~e~vflaQK~~I~kcn~~gKPVI~atqmleSm~~kprPtRaE~SDVanAV 323 (501)
T KOG2323|consen 244 NQEGVSNFDEILIESDGIMVARGDLGIEIPAEKVFLAQKMMIYKCNSAGKPVICATQMLESMIVKPRPTRAEASDVANAV 323 (501)
T ss_pred hhhhhccHHHHHHhcCceEEEeCCCCcccCHHHHHHHHHHHHHHhcccCCCEEEehhhHHhhccCCCCCccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCchhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcCCcEEEEEc
Q 010627 318 LDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDYGDVFKRVMQHSPVPMSPLESLASSAVRTANSARATLILVLT 397 (505)
Q Consensus 318 ~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T 397 (505)
+||+||+|||+|||.|+||+++|++|++||.+||..++|..+|.++....+.+.++.+++|.+|+.+|.+..+.+|+++|
T Consensus 324 Ldg~D~vmLsgEta~G~yP~~av~~m~~i~~~aE~~~~~~~~~~~l~~~v~~~~~~ie~~a~~Av~~a~~~~a~aIvv~T 403 (501)
T KOG2323|consen 324 LDGADCVMLSGETAKGKYPVEAVKTMARICKEAEAVIYYDSLFSELGTAVSFPMSTIESLAASAVRAATKCLASAIVVLT 403 (501)
T ss_pred hccCceEEeccchhcCcCcHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHhhcceEEEEEe
Confidence 99999999999999999999999999999999999999999999987778888899999999999999999999999999
Q ss_pred CCchHHHHHHhhCCCCcEEEEeecccccCCCCcCCCChhhhhccccccccEEEEeCCCCCCCCccCHHHHHHHHHHHHHH
Q 010627 398 RGGSTAKLVAKYRPGMPILSVVVPEIKTDNFDWSCSNEAPARHSLIFRGLVPVLYAGSARASDAETTEEALEFAIELGKK 477 (505)
Q Consensus 398 ~sG~ta~~ls~~RP~~pIiav~~p~~~~t~~~~~~~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~e~~i~~al~~~~~ 477 (505)
+||++|+++|+|||.+||+++ | ..+..|||++|||||+|+++..++...|.++.|..+++|++++++
T Consensus 404 ~sg~~a~lvskyrP~~PIi~v-------t------~~~~~aR~~~l~Rgv~Pvl~~~~~~~~~~~~~e~~i~~g~~~~k~ 470 (501)
T KOG2323|consen 404 KSGYTAILVSKYRPSVPIISV-------T------RPVLAARQSHLYRGIIPVLYARSPVEDWSEDVESRIKFGLDFGKK 470 (501)
T ss_pred cCcccHHHHhccCCCCCEEEE-------e------ccHHHHHHHHhhccceeeeecccchhhhhhhHHHHHHHHHHHHHh
Confidence 999999999999999999999 8 899999999999999999999888899999999999999999999
Q ss_pred cCCCCCCCEEEEEeec----CCCceEEEEEc
Q 010627 478 KGLCKKGDSVVALHRV----GTASVIKILNV 504 (505)
Q Consensus 478 ~g~~~~GD~VVvv~g~----g~tn~ikI~~v 504 (505)
.|+++.||.+|++.++ |.+|++++..+
T Consensus 471 ~g~~k~gd~~vvv~~~~~~~~~~~~i~v~~~ 501 (501)
T KOG2323|consen 471 KGILKKGDVVVVVNKGKGGASVTNTIRVEKV 501 (501)
T ss_pred cchhhcCCEEEEEecccCCccceeeEEEeeC
Confidence 9999999988888877 78999998764
No 15
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=100.00 E-value=6.5e-107 Score=840.40 Aligned_cols=344 Identities=57% Similarity=0.866 Sum_probs=311.4
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEecCCCeeEEeecCCC
Q 010627 14 KPKTKIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGILCAVMLDTKGPEIRTGFLKDG 93 (505)
Q Consensus 14 ~r~tkIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~GpkiR~g~~~~~ 93 (505)
+|||||||||||+|++++.|++|+++|||+||||||||++++|+++++++|+++++++.+++|++||+|||||||.+.++
T Consensus 1 mRkTKIi~TiGPas~~~e~l~~li~aGm~v~RiN~SHg~~e~~~~~i~~iR~a~~~~~~~i~IllDl~GPkIRtg~l~~g 80 (348)
T PF00224_consen 1 MRKTKIIATIGPASESVEVLRKLIEAGMNVARINFSHGTHEEHKEIIENIREAEKELGKPIAILLDLKGPKIRTGRLKDG 80 (348)
T ss_dssp -SSSEEEEEESTTTCSHHHHHHHHHHTEEEEEEETTSS-HHHHHHHHHHHHHHHHHTTTS-EEEEEE-TS-EBB-BBTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccEEEEEeeecCCHHHHHHHHHHHHHHHhccCCceEEEeccCCCcceeeeeccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred -CcEEecCCCEEEEEecCC--CCCCccEEEecchhhhcccCCCCEEEEeCCeEEEEEEEEeeeCCe-EEEEEeeCceecC
Q 010627 94 -KPIQLKQGQEITISTDYT--IKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGL-VKCRCENSAMLGE 169 (505)
Q Consensus 94 -~~i~l~~G~~v~l~~~~~--~~~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~~~-i~~~v~~gG~l~s 169 (505)
.++.|++||+|+|+.+.. ..++++.|++||++|+++|++||.||+|||++.|+|+++ +++. +.|+|++||.|++
T Consensus 81 ~~~i~L~~G~~v~lt~d~~~~~~g~~~~I~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~v--~~~~~i~~~v~~~G~L~~ 158 (348)
T PF00224_consen 81 KKEIELKKGDTVTLTTDDSYEESGDSNRIPVNYPELFEDVKPGDKILIDDGKIELEVTEV--DGDSSIKCEVLNGGKLKS 158 (348)
T ss_dssp SSSEEE-TTSEEEEESSCTGTTCBBSSEEEBSSTTHHHHS-TTEEEEETTTTEEEEEEEE--ESTEEEEEEESS-EEEES
T ss_pred cccccccCCCEEEEEeccccccccCcccccCCchhhhhhcCCCCEEEEcCCCcEEEEEEE--cCCcceeEEeCCCCCccC
Confidence 369999999999998854 346788999999999999999999999999999999965 7777 9999999999999
Q ss_pred CCCcccCCccccCCCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHH
Q 010627 170 RKNVNLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDIL 249 (505)
Q Consensus 170 ~Kgvnlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~ 249 (505)
+||||+|+..+++|.||++|++|| +|++++|+|||++|||++++||.++|++|.+.|.+++|||||||++|++||+||+
T Consensus 159 ~KgVnlp~~~~~lp~LtekD~~di-~fa~~~~vD~IalSFVrsa~dV~~lr~~l~~~~~~~~iiaKIE~~~~v~nl~eI~ 237 (348)
T PF00224_consen 159 RKGVNLPGVDLDLPALTEKDKEDI-KFAVENGVDFIALSFVRSAEDVKELRKILGEKGKDIKIIAKIETKEAVENLDEIL 237 (348)
T ss_dssp SEBEEETTS---S-SS-HHHHHHH-HHHHHTT-SEEEETTE-SHHHHHHHHHHHTCTTTTSEEEEEE-SHHHHHTHHHHH
T ss_pred CccceecccccccccCCHHHHHHH-HHHHHcCCCEEEecCCCchHHHHHHHHHhhhcCcccceeeccccHHHHhhHHHHh
Confidence 999999999999999999999999 9999999999999999999999999999999888999999999999999999999
Q ss_pred hcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeeccc
Q 010627 250 ANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGE 329 (505)
Q Consensus 250 ~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~E 329 (505)
++||||||||||||+|+|++++|.+||+|+++|+++|||||+||||||||+++|.|||||++||+|||+||+||+|||+|
T Consensus 238 ~~sDgimiaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~dg~d~vmLs~E 317 (348)
T PF00224_consen 238 EASDGIMIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIVATQMLESMIKNPIPTRAEVSDVANAVLDGADAVMLSGE 317 (348)
T ss_dssp HHSSEEEEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHHT-SEEEESHH
T ss_pred hhcCeEEEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHcCCCEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcccCchhhH
Q 010627 330 TAAGAYPEVAVRTMAQICVEAESTLDYGDVF 360 (505)
Q Consensus 330 ta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~ 360 (505)
||+|+||+++|++|++|+++||+.++|..+|
T Consensus 318 Ta~G~~p~~~v~~~~~i~~~~E~~~~~~~~~ 348 (348)
T PF00224_consen 318 TAIGKYPVEAVKTMARIIREAEKYLDYRNVF 348 (348)
T ss_dssp HHTSSSHHHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 9999999999999999999999999887665
No 16
>PRK06739 pyruvate kinase; Validated
Probab=100.00 E-value=3e-105 Score=820.99 Aligned_cols=331 Identities=39% Similarity=0.628 Sum_probs=318.5
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEecCCCeeEEeecCCCCc
Q 010627 16 KTKIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGILCAVMLDTKGPEIRTGFLKDGKP 95 (505)
Q Consensus 16 ~tkIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~GpkiR~g~~~~~~~ 95 (505)
++||||||||+|++++.|++|+++|||+||||||||++++|.++++++|++.+ +++||+||||||||+|.+++ ++
T Consensus 2 ~~~~V~TiGPas~~~e~l~~Li~aGm~v~RlNfSHGs~e~h~~~i~~vR~~~~----~vaIl~Dl~GPkIR~G~~~~-~~ 76 (352)
T PRK06739 2 TIDRICTIGPASNNKETLAQLINNGMKIVRLNLSHGTHESHKDIIRLVKSLDD----SIKILGDVQGPKIRLGEIKG-EQ 76 (352)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHhhh----hcceeecCCCCcceecccCC-Cc
Confidence 68999999999999999999999999999999999999999999999999864 48899999999999999976 46
Q ss_pred EEecCCCEEEEEecCCCCCCccEEEecchhhhcccCCCCEEEEeCCeEEEEEEEEeeeCCeEEEEEeeCceecCCCCccc
Q 010627 96 IQLKQGQEITISTDYTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGERKNVNL 175 (505)
Q Consensus 96 i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~~~i~~~v~~gG~l~s~Kgvnl 175 (505)
+.|++|+.++|+++ ...++.+.+++||++|++.+++||.||+|||+|.|+|++ ++++.+.|+|++||.|+++||||+
T Consensus 77 i~l~~G~~v~lt~~-~~~g~~~~i~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~--v~~~~v~~~v~~gG~L~s~Kgvn~ 153 (352)
T PRK06739 77 ITLQAGDSFILHTQ-PVTGSSTEASVDYEGIANDVKVGSRILMNDGEVELIVEK--VSTDKIETKVKTGGNISSHKGVNL 153 (352)
T ss_pred EEecCCCEEEEecC-ccCCCCCEEecchHHHHhhcCCCCEEEEeCCEEEEEEEE--EeCCEEEEEEeeCcEEcCCCCeec
Confidence 99999999999986 456788899999999999999999999999999999995 578999999999999999999999
Q ss_pred CCccccCCCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccC-CCceEEEEecCHHHHhcHHHHHhcCCe
Q 010627 176 PGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHA-KNILLMSKVENQEGVANFDDILANSDA 254 (505)
Q Consensus 176 p~~~~~l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~-~~~~IiakIEt~~av~nldeI~~~sDg 254 (505)
|+..+++|.||++|++|| +|++++|+|||++|||++++||+++|++|++.| .+++|||||||++|++||++|++++||
T Consensus 154 pg~~~~lp~ltekD~~di-~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eI~~~sDg 232 (352)
T PRK06739 154 PGAIVRLPAITEKDKKDI-QFLLEEDVDFIACSFVRKPSHIKEIRDFIQQYKETSPNLIAKIETMEAIENFQDICKEADG 232 (352)
T ss_pred ccccCCCCCCCHHHHHHH-HHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhcCE
Confidence 999999999999999999 999999999999999999999999999998875 479999999999999999999999999
Q ss_pred eEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCC
Q 010627 255 FMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGA 334 (505)
Q Consensus 255 ImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~ 334 (505)
|||||||||+|+|++++|.+||+|++.|+++|||||+||||||||++||+|||||++||||||+||+||+|||+|||+|+
T Consensus 233 imVARGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~vMLS~ETA~G~ 312 (352)
T PRK06739 233 IMIARGDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSAESASGE 312 (352)
T ss_pred EEEECcccccccCHHHHHHHHHHHHHHHHHhCCCEEEEcchHHhhccCCCCChHHHHHHHHHHHhCCcEEEEcccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcccC
Q 010627 335 YPEVAVRTMAQICVEAESTLD 355 (505)
Q Consensus 335 yP~~~V~~m~~i~~~aE~~~~ 355 (505)
||+++|++|++||++||++.+
T Consensus 313 yPveaV~~m~~I~~~aE~~~~ 333 (352)
T PRK06739 313 HPIESVSTLRLVSEFAEHVKK 333 (352)
T ss_pred CHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999997543
No 17
>PRK14725 pyruvate kinase; Provisional
Probab=100.00 E-value=1.5e-92 Score=759.20 Aligned_cols=332 Identities=33% Similarity=0.494 Sum_probs=315.5
Q ss_pred ccCCCeEEEEecC-CCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEecCCCeeEEeec
Q 010627 12 EKKPKTKIVCTLG-PASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGILCAVMLDTKGPEIRTGFL 90 (505)
Q Consensus 12 ~~~r~tkIi~TiG-p~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~GpkiR~g~~ 90 (505)
+..|+|||+|||| |++++++.|++|+++||||||||||||++++|+++|+++|++++++|+||+|++||+|||||||.+
T Consensus 136 ~~~R~tkImvTlg~~Aa~d~e~i~~Li~aGmdvaRINcAHg~~e~w~~mi~~vR~a~~~~gr~~~I~mDL~GPKiRtG~l 215 (608)
T PRK14725 136 PSGRPTRIMVTLPTEAADDPDLVRRLLAAGMDIARINCAHDDPEAWRAMIANVRTAEEELGRRCRIAMDLAGPKLRTGPI 215 (608)
T ss_pred CCCCCceEEEeCCCcccCCHHHHHHHHHcCCCEeeeECCCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCcceEEec
Confidence 4568999999999 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC----------------------------------------------------------------------------
Q 010627 91 KDGK---------------------------------------------------------------------------- 94 (505)
Q Consensus 91 ~~~~---------------------------------------------------------------------------- 94 (505)
.++.
T Consensus 216 ~~g~~v~~~~p~rd~~G~v~~pa~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~l~~Gd~i~~~DaRg~~R~l~V~~~~~~ 295 (608)
T PRK14725 216 APGPRVIKLRPTRDALGRVLTPARLWLTASESPPPSPPPGPVGLPVDPEWLARLEPGDELRFTDARGKKRKLTVTEVDDE 295 (608)
T ss_pred CCCccccccccccccccccccchhheeecccCCCCCCCccccccccChhhhhhcCCCceeeeeeccccceeeeEEeecCc
Confidence 8653
Q ss_pred ------------------------------------cEEecCCCEEEEEecCCC----CCCcc--EEEecchhhhcccCC
Q 010627 95 ------------------------------------PIQLKQGQEITISTDYTI----KGDEN--MICMSYKKLAVDVQP 132 (505)
Q Consensus 95 ------------------------------------~i~l~~G~~v~l~~~~~~----~~~~~--~i~v~~~~~~~~v~~ 132 (505)
.+.|++|+.++|+.+... .++.. .|+++|+++++.+++
T Consensus 296 ~~~~~~~~~~Y~~~G~~l~~~~~~~~~v~~~p~~~~~i~L~~Gd~l~lt~~~~~~~~~~~~~~~~~i~~t~p~l~~~v~~ 375 (608)
T PRK14725 296 GVLAEGSQTAYLANGTLLRLGRHDSTRVGGLPPVEQKLRLKVGDRLVLTRDDAPGDPAQGDAPPARISCTLPEAFRAARV 375 (608)
T ss_pred eeEEeecceeeeccCceeeeccccccccccccccCcceEecCCCEEEEecCCcCCccccCCCCccEEEechHHHHHhcCC
Confidence 589999999999987321 13445 899999999999999
Q ss_pred CCEEEEeCCeEEEEEEEEeeeCCeEEEEEee----CceecCCCCcccCCccccCCCCChhcHHHHHhcccccCCCEEEEc
Q 010627 133 GSVILCSDGTISFTVLECNVKAGLVKCRCEN----SAMLGERKNVNLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIALS 208 (505)
Q Consensus 133 Gd~I~idDG~i~l~V~~v~~~~~~i~~~v~~----gG~l~s~Kgvnlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~s 208 (505)
||.||+|||+|.++|++ ++++.+.|+|++ ||.|+++||||+|+..+++|.||+||++|| +|++++ +|||++|
T Consensus 376 G~~VlidDG~I~l~V~~--~~~~~v~~~V~~a~~~gg~L~s~KGiNlP~~~l~lp~LTekD~~dl-~f~~~~-vD~ValS 451 (608)
T PRK14725 376 GERVWFDDGKIGAVVVK--VEADEVELRITHARPGGSKLKAGKGINLPDSHLPLPALTDKDLEDL-AFVAKH-ADIVALS 451 (608)
T ss_pred CCEEEEeCCeEEEEEEE--EECCEEEEEEEEecCCCCEecCCCceecCCCCCCCCCCCHHHHHHH-HHHHHh-CCEEEEC
Confidence 99999999999999995 578999999999 999999999999999999999999999999 999999 9999999
Q ss_pred CCCChhHHHHHHHHHhccC-CCceEEEEecCHHHHhcHHHHHhcC-----CeeEEecCcccCcCCchhHHHHHHHHHHHH
Q 010627 209 FVRKGSDLVGVRKLLGGHA-KNILLMSKVENQEGVANFDDILANS-----DAFMVARGDLGMEIPIEKIFLAQKVMIYKC 282 (505)
Q Consensus 209 fV~sa~dv~~v~~~l~~~~-~~~~IiakIEt~~av~nldeI~~~s-----DgImIaRgDLg~e~~~~~v~~~qk~Ii~~~ 282 (505)
||++++||+.++++|.+.| .++.|||||||++|++||+||+.++ |||||||||||+|+|++++|.+||+|+..|
T Consensus 452 FVrs~~DV~~lr~~L~~~g~~~~~IiaKIEt~~av~nL~eIl~~am~~~~DGIMIARGDLgvEi~~e~lp~iQk~Ii~~c 531 (608)
T PRK14725 452 FVRSPEDVRLLLDALEKLGADDLGVVLKIETRRAFENLPRILLEAMRHPRFGVMIARGDLAVEVGFERLAEVQEEILWLC 531 (608)
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhhccCCCcEEEEECCccccccCHHHHHHHHHHHHHHH
Confidence 9999999999999998875 4799999999999999999999986 999999999999999999999999999999
Q ss_pred HHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcc
Q 010627 283 NIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAEST 353 (505)
Q Consensus 283 ~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~ 353 (505)
+++|||||+||||||||++||.|||||++|||||+ |+||+||| .|+||+|+|++|++|++++|++
T Consensus 532 ~~~~kPVI~ATQmLESM~~~p~PTRAEvtDVAnAv--gaD~VMLS----~G~yPveAV~~l~~I~~r~e~~ 596 (608)
T PRK14725 532 EAAHVPVIWATQVLESLAKKGLPSRAEITDAAMAL--RAECVMLN----KGPHIVEAVRVLDDILRRMEEH 596 (608)
T ss_pred HHcCCCEEEEcchHhhhccCCCCCchhHHHHHhhh--cCCEEeec----CCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999 99999999 9999999999999999999975
No 18
>PRK08187 pyruvate kinase; Validated
Probab=100.00 E-value=3e-91 Score=744.61 Aligned_cols=332 Identities=28% Similarity=0.473 Sum_probs=314.5
Q ss_pred ccCCCeEEEEec-CCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEecCCCeeEEeec
Q 010627 12 EKKPKTKIVCTL-GPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGILCAVMLDTKGPEIRTGFL 90 (505)
Q Consensus 12 ~~~r~tkIi~Ti-Gp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~GpkiR~g~~ 90 (505)
+..|+||||||| ||+++++++|++|+++|||+||||||||++++|+++|+++|++++++|++|+|++||+|||||||.+
T Consensus 130 ~~~r~tkIv~Tlg~pa~~~~e~i~~Li~aGmdvaRiN~SHg~~e~~~~~i~~vR~a~~~~g~~i~Il~DL~GPKIRtG~l 209 (493)
T PRK08187 130 PAARRTRIMVTLPSEAADDPDFVLRLAERGMDCARINCAHDDPAAWQAMIGHLRQAERATGRRCKILMDLAGPKIRTGAV 209 (493)
T ss_pred cCCCCceEEEECCCCccCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCCCceeeccc
Confidence 456899999999 5999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CcEEecCCCEEEEEecCCCC---CCccEEEecchhhhcccCCCCEEEEeCCeEEEEEEEEeeeCCeEEEEEe----
Q 010627 91 KDG-KPIQLKQGQEITISTDYTIK---GDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCE---- 162 (505)
Q Consensus 91 ~~~-~~i~l~~G~~v~l~~~~~~~---~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~~~i~~~v~---- 162 (505)
.++ .++.|++||.|+|+.+.... ++...|+++|+++++.+++||.|++|||+|.|+|++ ++++.+.|+|+
T Consensus 210 ~~~~~~~~l~~Gd~i~l~~~~~~~~~~~~~~~i~~~~~~l~~~v~~Gd~IlidDG~I~l~V~~--v~~~~v~~~V~~~~~ 287 (493)
T PRK08187 210 AGPLGKTRLYTGDRLALVAQGPPRRIDEEHFQVTCTLPEILARLAVGARVWIDDGKLGARVER--VGPGGALLEVTHARP 287 (493)
T ss_pred CCCCccEEecCCCEEEEeccccccCCCCCccEEEechHHHHHhcCCCCEEEEeCCeEEEEEEE--EeCCEEEEEEEEecC
Confidence 864 25999999999999874222 245789999999999999999999999999999995 57889999999
Q ss_pred eCceecCCCCcccCCccccCCCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccC----CCceEEEEecC
Q 010627 163 NSAMLGERKNVNLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHA----KNILLMSKVEN 238 (505)
Q Consensus 163 ~gG~l~s~Kgvnlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~----~~~~IiakIEt 238 (505)
+||.|+++||||||+..+++|.+|++|.+|| +|+++ ++|+|++|||++++||..++++|.+.+ .++.|||||||
T Consensus 288 ~gg~L~~~KgiNlP~~~vrin~LtekD~~DL-~f~~~-~vD~I~lSfV~saeDV~~l~~~L~~~~~~~~~~~~IIaKIET 365 (493)
T PRK08187 288 KGLKLKPEKGLNFPDTALDLPALTEKDRADL-DFVAR-HADLVGYSFVQSPGDVEALQAALAARRPDDWRKLGLVLKIET 365 (493)
T ss_pred CCeEecCCCcccccCceecCCCCCHhHHHHH-HHHHh-cCCEEEECCCCCHHHHHHHHHHHHHhCCCCCCCCeEEEEECC
Confidence 9999999999999999999999999999999 99998 699999999999999999999998765 47899999999
Q ss_pred HHHHhcHHHHHhcCC-----eeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHH
Q 010627 239 QEGVANFDDILANSD-----AFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDV 313 (505)
Q Consensus 239 ~~av~nldeI~~~sD-----gImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv 313 (505)
++|++|+++|+.++| ||||||||||+|+|++++|.+|++|+.+|+++|||+|+||||||||++||.|||||++||
T Consensus 366 ~~gv~Nl~eI~~~ad~~~v~GImiARGDLgvEig~e~~p~~Qk~II~~craagkpvI~ATQmLESM~~~p~PTRAEvtDv 445 (493)
T PRK08187 366 PRAVANLPELIVQAAGRQPFGVMIARGDLAVEIGFERLAEMQEEILWLCEAAHVPVIWATQVLEGLVKKGLPSRAEMTDA 445 (493)
T ss_pred HHHHHHHHHHHHHhCcCCCcEEEEEchHhhhhcCcccChHHHHHHHHHHHHhCCCeEEEchhhHhhccCCCCchHHHHHH
Confidence 999999999998887 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcc
Q 010627 314 ANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAEST 353 (505)
Q Consensus 314 ~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~ 353 (505)
||+ ||+||+||| .|+||+++|++|++|+.++|++
T Consensus 446 Ana--dgaDavMLs----~G~ypveaV~~l~~I~~~~e~~ 479 (493)
T PRK08187 446 AMA--ARAECVMLN----KGPYLVEAVTFLDDLLARMDGH 479 (493)
T ss_pred Hhh--cCCCEEeec----CCCCHHHHHHHHHHHHHHHHHh
Confidence 997 999999999 9999999999999999999975
No 19
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=99.95 E-value=4.2e-27 Score=208.00 Aligned_cols=112 Identities=38% Similarity=0.622 Sum_probs=103.0
Q ss_pred hhhHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCCCCcEEEEeecccccCCCCcCCCChhhhhccccccccEEEEeC
Q 010627 374 LESLASSAVRTANSARATLILVLTRGGSTAKLVAKYRPGMPILSVVVPEIKTDNFDWSCSNEAPARHSLIFRGLVPVLYA 453 (505)
Q Consensus 374 ~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~ls~~RP~~pIiav~~p~~~~t~~~~~~~~~~~aR~L~L~~GV~P~l~~ 453 (505)
+|+++.+++++|.+++|++||++|.||+||+++|||||.||||++ | ++++++|||+|+|||+|++++
T Consensus 1 Teaia~aa~~~A~~~~ak~Ivv~T~sG~ta~~isk~RP~~pIiav-------t------~~~~~~r~l~l~~GV~p~~~~ 67 (117)
T PF02887_consen 1 TEAIARAAVELAEDLNAKAIVVFTESGRTARLISKYRPKVPIIAV-------T------PNESVARQLSLYWGVYPVLIE 67 (117)
T ss_dssp HHHHHHHHHHHHHHHTESEEEEE-SSSHHHHHHHHT-TSSEEEEE-------E------SSHHHHHHGGGSTTEEEEECS
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCchHHHHHHhhCCCCeEEEE-------c------CcHHHHhhhhcccceEEEEec
Confidence 589999999999999999999999999999999999999999999 8 999999999999999999988
Q ss_pred CCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEeec-----CCCceEEEEE
Q 010627 454 GSARASDAETTEEALEFAIELGKKKGLCKKGDSVVALHRV-----GTASVIKILN 503 (505)
Q Consensus 454 ~~~~~~~~~~~e~~i~~al~~~~~~g~~~~GD~VVvv~g~-----g~tn~ikI~~ 503 (505)
.. ..+.+++++.++++++++|++++||.||+++|. |+||++||+.
T Consensus 68 ~~-----~~~~~~~~~~a~~~~~~~g~~~~gd~vVv~~g~~~~~~g~tn~~~v~~ 117 (117)
T PF02887_consen 68 EF-----DKDTEELIAEALEYAKERGLLKPGDKVVVVAGMPFGTPGGTNTIRVVR 117 (117)
T ss_dssp SH-----SHSHHHHHHHHHHHHHHTTSS-TTSEEEEEEESSTTTTSSEEEEEEEE
T ss_pred cc-----cccHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCCCEEEEEEC
Confidence 73 337999999999999999999999999999994 8999999974
No 20
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=99.66 E-value=3.5e-16 Score=155.71 Aligned_cols=133 Identities=20% Similarity=0.239 Sum_probs=113.4
Q ss_pred CCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHH--------------------------HhccCCCceEEEEec
Q 010627 184 TLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKL--------------------------LGGHAKNILLMSKVE 237 (505)
Q Consensus 184 ~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~--------------------------l~~~~~~~~IiakIE 237 (505)
.++..|...| +.++|.|+++|++|+|+|++|++++.+. +...|.++.++++||
T Consensus 68 Rvp~~~~~~i-~r~LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~IE 146 (249)
T TIGR03239 68 RPPWNEPVII-KRLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIE 146 (249)
T ss_pred ECCCCCHHHH-HHHhcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEEC
Confidence 4455678889 9999999999999999999999999753 344567889999999
Q ss_pred CHHHHhcHHHHHhc--CCeeEEecCcccCcCCc------hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHH
Q 010627 238 NQEGVANFDDILAN--SDAFMVARGDLGMEIPI------EKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAE 309 (505)
Q Consensus 238 t~~av~nldeI~~~--sDgImIaRgDLg~e~~~------~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraE 309 (505)
|++|++|++||+++ .|++++|++||+.+++. +++..+..+++.+|+++|||+++.+ ++.
T Consensus 147 t~~av~n~~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~~~-----------~~~-- 213 (249)
T TIGR03239 147 SQKGVDNVDEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGILA-----------PVE-- 213 (249)
T ss_pred CHHHHHhHHHHhCCCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEcC-----------CCH--
Confidence 99999999999987 69999999999999986 3788888999999999999998521 222
Q ss_pred HHHHHHHHHcCCceeeecccCC
Q 010627 310 ATDVANAVLDGTDCVMLSGETA 331 (505)
Q Consensus 310 v~Dv~nav~~G~D~imLs~Eta 331 (505)
.+...++..|++.++++.|+.
T Consensus 214 -~~~~~~~~~G~~~~~~~~D~~ 234 (249)
T TIGR03239 214 -ADARRYLEWGATFVAVGSDLG 234 (249)
T ss_pred -HHHHHHHHcCCCEEEEhHHHH
Confidence 356778899999999998865
No 21
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=99.64 E-value=5.2e-16 Score=155.09 Aligned_cols=133 Identities=20% Similarity=0.266 Sum_probs=113.2
Q ss_pred CCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHH--------------------------HhccCCCceEEEEec
Q 010627 184 TLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKL--------------------------LGGHAKNILLMSKVE 237 (505)
Q Consensus 184 ~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~--------------------------l~~~~~~~~IiakIE 237 (505)
.+++.|...| +.++|.|+++|++|+|+|++|++++.+. +...|.++.++++||
T Consensus 75 Rvp~~~~~~i-~r~LD~Ga~giivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~~vi~~IE 153 (256)
T PRK10558 75 RVPTNEPVII-KRLLDIGFYNFLIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITVLVQIE 153 (256)
T ss_pred ECCCCCHHHH-HHHhCCCCCeeeecCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhccccEEEEEEC
Confidence 4466778899 9999999999999999999999998653 444567889999999
Q ss_pred CHHHHhcHHHHHhc--CCeeEEecCcccCcCCc------hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHH
Q 010627 238 NQEGVANFDDILAN--SDAFMVARGDLGMEIPI------EKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAE 309 (505)
Q Consensus 238 t~~av~nldeI~~~--sDgImIaRgDLg~e~~~------~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraE 309 (505)
|++|++|++||+++ .|++++|++||+.+++. +++..+..+++.+|+++|||+++. .++-
T Consensus 154 t~~av~ni~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~~g~~-----------~~~~-- 220 (256)
T PRK10558 154 SQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKPSGIL-----------APVE-- 220 (256)
T ss_pred CHHHHHHHHHHhCCCCCcEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCceEEc-----------CCCH--
Confidence 99999999999987 59999999999999986 378888899999999999999852 1222
Q ss_pred HHHHHHHHHcCCceeeecccCC
Q 010627 310 ATDVANAVLDGTDCVMLSGETA 331 (505)
Q Consensus 310 v~Dv~nav~~G~D~imLs~Eta 331 (505)
.+...++..|++.++++.|+.
T Consensus 221 -~~~~~~~~~G~~~v~~~~D~~ 241 (256)
T PRK10558 221 -ADARRYLEWGATFVAVGSDLG 241 (256)
T ss_pred -HHHHHHHHcCCCEEEEchHHH
Confidence 335778889999999998865
No 22
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=99.61 E-value=2.7e-15 Score=150.51 Aligned_cols=131 Identities=17% Similarity=0.180 Sum_probs=111.2
Q ss_pred ChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHh---------------------------ccCCCceEEEEecC
Q 010627 186 TEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLG---------------------------GHAKNILLMSKVEN 238 (505)
Q Consensus 186 te~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~---------------------------~~~~~~~IiakIEt 238 (505)
...|...| +.++|.|+++|++|+|+|+++++++.+..+ ..|.++.++++|||
T Consensus 76 p~~~~~~i-~r~LD~GA~GIivP~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~qiEt 154 (267)
T PRK10128 76 VEGSKPLI-KQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQVES 154 (267)
T ss_pred CCCCHHHH-HHHhCCCCCeeEecCcCCHHHHHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEEECC
Confidence 44566788 999999999999999999999999977652 22457899999999
Q ss_pred HHHHhcHHHHHhc--CCeeEEecCcccCcCCc------hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHH
Q 010627 239 QEGVANFDDILAN--SDAFMVARGDLGMEIPI------EKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEA 310 (505)
Q Consensus 239 ~~av~nldeI~~~--sDgImIaRgDLg~e~~~------~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv 310 (505)
++|++|++||+++ .|++++|++||+.+++. +++..+.++++++|+++|||+++.. ++.
T Consensus 155 ~~a~~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~~G~~~-----------~~~--- 220 (267)
T PRK10128 155 KTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLA-----------VDP--- 220 (267)
T ss_pred HHHHHhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEcC-----------CCH---
Confidence 9999999999998 59999999999999986 4777888999999999999998521 222
Q ss_pred HHHHHHHHcCCceeeecccCC
Q 010627 311 TDVANAVLDGTDCVMLSGETA 331 (505)
Q Consensus 311 ~Dv~nav~~G~D~imLs~Eta 331 (505)
.+...++..|++.+.++.|+.
T Consensus 221 ~~a~~~~~~G~~~v~~g~D~~ 241 (267)
T PRK10128 221 DMAQKCLAWGANFVAVGVDTM 241 (267)
T ss_pred HHHHHHHHcCCcEEEEChHHH
Confidence 345778899999999998865
No 23
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=1.6e-14 Score=139.50 Aligned_cols=135 Identities=19% Similarity=0.229 Sum_probs=115.0
Q ss_pred CCCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHH---------------------------HHhccCCCceEEE
Q 010627 182 LPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRK---------------------------LLGGHAKNILLMS 234 (505)
Q Consensus 182 l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~---------------------------~l~~~~~~~~Iia 234 (505)
+-.++.-|...| +..+|.|+..+.+|+|+|+++.+++.+ |+...|.++.+++
T Consensus 71 vVR~p~g~~~~I-kq~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~lv 149 (255)
T COG3836 71 VVRPPVGDPVMI-KQLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQANDEICLLV 149 (255)
T ss_pred eeeCCCCCHHHH-HHHHccccceeeeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcccceEEEE
Confidence 334566777889 999999999999999999999999866 4456688899999
Q ss_pred EecCHHHHhcHHHHHhc--CCeeEEecCcccCcCCc------hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCC
Q 010627 235 KVENQEGVANFDDILAN--SDAFMVARGDLGMEIPI------EKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPT 306 (505)
Q Consensus 235 kIEt~~av~nldeI~~~--sDgImIaRgDLg~e~~~------~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~pt 306 (505)
||||.+|++|||+|+++ .||||||++||+.++|. ++|..+...++.+.+++||..++-+ +.|
T Consensus 150 qiEtr~gl~nLDaIaaveGVDgvFiGPaDLaas~G~~gn~~hpeV~~aI~~~~~~i~aaGKaagil~---------~~p- 219 (255)
T COG3836 150 QIETRAGLDNLDAIAAVEGVDGVFIGPADLAASLGHLGNPGHPEVQAAIEHIIARIRAAGKAAGILA---------ADP- 219 (255)
T ss_pred EEccHHHHHHHHHHHccCCCCeEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcCCcccccc---------CCH-
Confidence 99999999999999998 59999999999999987 4777788899999999999987521 223
Q ss_pred hHHHHHHHHHHHcCCceeeecccCC
Q 010627 307 RAEATDVANAVLDGTDCVMLSGETA 331 (505)
Q Consensus 307 raEv~Dv~nav~~G~D~imLs~Eta 331 (505)
.+...++..|+..+.+..||.
T Consensus 220 ----~~a~~yl~lGa~fvavG~D~~ 240 (255)
T COG3836 220 ----ADARRYLALGATFVAVGSDTG 240 (255)
T ss_pred ----HHHHHHHHhCCeEEEEeccHH
Confidence 345788999999999988865
No 24
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=99.54 E-value=2.1e-14 Score=143.17 Aligned_cols=131 Identities=16% Similarity=0.134 Sum_probs=108.7
Q ss_pred ChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhc-----c----------------------CCCceEEEEecC
Q 010627 186 TEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGG-----H----------------------AKNILLMSKVEN 238 (505)
Q Consensus 186 te~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~-----~----------------------~~~~~IiakIEt 238 (505)
+..|..+| +.++|.|+|+|++|+|+|+++++++.++++- + |.++.++++|||
T Consensus 70 ~~~~~~~i-~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~IEt 148 (249)
T TIGR02311 70 AIGDPVLI-KQLLDIGAQTLLVPMIETAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQVET 148 (249)
T ss_pred CCCCHHHH-HHHhCCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhceEEEEEecC
Confidence 33445588 8999999999999999999999999998751 1 125779999999
Q ss_pred HHHHhcHHHHHhc--CCeeEEecCcccCcCCc------hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHH
Q 010627 239 QEGVANFDDILAN--SDAFMVARGDLGMEIPI------EKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEA 310 (505)
Q Consensus 239 ~~av~nldeI~~~--sDgImIaRgDLg~e~~~------~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv 310 (505)
++|++|+++|+++ .|++++|++||+.+++. +++..+.+++.++|+.+||+.++.. ++.
T Consensus 149 ~~av~n~~eI~a~~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~~Gi~~-----------~~~--- 214 (249)
T TIGR02311 149 REALDNLEEIAAVEGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGKAAGILT-----------ADP--- 214 (249)
T ss_pred HHHHHHHHHHHCCCCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCceeecC-----------CCH---
Confidence 9999999999987 48999999999999986 3566777889999999999998632 221
Q ss_pred HHHHHHHHcCCceeeecccCC
Q 010627 311 TDVANAVLDGTDCVMLSGETA 331 (505)
Q Consensus 311 ~Dv~nav~~G~D~imLs~Eta 331 (505)
.+...++..|++.++++.|+.
T Consensus 215 ~~~~~~~~~G~~~~~~~~D~~ 235 (249)
T TIGR02311 215 KLARQYLKLGALFVAVGVDTT 235 (249)
T ss_pred HHHHHHHHcCCCEEEEchHHH
Confidence 345678899999999998865
No 25
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=99.46 E-value=5.6e-14 Score=137.34 Aligned_cols=101 Identities=22% Similarity=0.338 Sum_probs=85.1
Q ss_pred cHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhcc-------CCCceEEEEecCHHHHhcHHHHHhcC--CeeEEec
Q 010627 189 DKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGH-------AKNILLMSKVENQEGVANFDDILANS--DAFMVAR 259 (505)
Q Consensus 189 D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~-------~~~~~IiakIEt~~av~nldeI~~~s--DgImIaR 259 (505)
-.+|| + +++.|+|+|++|+|+|++|++++.+++... +.++.++++|||++||+|+++|++.. |++++|+
T Consensus 74 ~~~Dl-~-~l~~g~~gI~lP~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a~~~v~~l~~G~ 151 (221)
T PF03328_consen 74 IERDL-E-ALDAGADGIVLPKVESAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAAVPGVDGLFFGP 151 (221)
T ss_dssp HHHHH-H-HHHTTSSEEEETT--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHTSTTEEEEEE-H
T ss_pred hhhhh-h-hcccCCCeeeccccCcHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhcccCCeeEEEeCc
Confidence 35567 6 899999999999999999999999998643 34689999999999999999999654 8999999
Q ss_pred CcccCcCCch------hHHHHHHHHHHHHHHcCCCeEE
Q 010627 260 GDLGMEIPIE------KIFLAQKVMIYKCNIQGKPVVT 291 (505)
Q Consensus 260 gDLg~e~~~~------~v~~~qk~Ii~~~~~~gkpvi~ 291 (505)
+||+.++|.. ++..+.++++.+|+++|||.+-
T Consensus 152 ~Dls~~lG~~~~~~~~~~~~a~~~v~~aa~a~g~~~i~ 189 (221)
T PF03328_consen 152 ADLSASLGIPGQPDHPEVLEARSKVVLAARAAGKPAID 189 (221)
T ss_dssp HHHHHHTTTTTSTTSHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred HHHHhhhccCCCCcchHHHHHHHHHHHHHHHcCCCeEE
Confidence 9999999874 6889999999999999997654
No 26
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=99.28 E-value=1.7e-11 Score=139.76 Aligned_cols=150 Identities=17% Similarity=0.176 Sum_probs=120.1
Q ss_pred CCCChhcHHHHHhccc-ccCCCE--EEEcCCCChhHHHHHHHHHhccC-----CCceEEEEecCHHHHhcHHHHHhcCCe
Q 010627 183 PTLTEKDKEDILKWGI-PNQIDM--IALSFVRKGSDLVGVRKLLGGHA-----KNILLMSKVENQEGVANFDDILANSDA 254 (505)
Q Consensus 183 ~~lte~D~~di~~~al-~~g~d~--V~~sfV~sa~dv~~v~~~l~~~~-----~~~~IiakIEt~~av~nldeI~~~sDg 254 (505)
|.+-....+.| ..++ +.|+.. |++|||+|+++++++++.++..+ .++.+++|||++.|+.|+|+|+++.|+
T Consensus 609 ~~lf~~qlraI-~ral~d~G~~~~~Im~PmV~s~eE~~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~vDf 687 (782)
T TIGR01418 609 EEAFRLECRAI-KRVREEMGLTNVEVMIPFVRTPEEGKRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAKEFDG 687 (782)
T ss_pred HHHHHHHHHHH-HHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHHhCCE
Confidence 55556777888 7788 889988 99999999999999999886432 348999999999999999999999999
Q ss_pred eEEecCcccC-cCCc---------------hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHH
Q 010627 255 FMVARGDLGM-EIPI---------------EKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVL 318 (505)
Q Consensus 255 ImIaRgDLg~-e~~~---------------~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~ 318 (505)
++||++||+. .++. +.|..+.++++++|+++|||+.++.+|-.. .| ..+...+.
T Consensus 688 isIGtnDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgicge~~~~-----~p-----~~~~~l~~ 757 (782)
T TIGR01418 688 FSIGSNDLTQLTLGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGICGQAPSD-----YP-----EVVEFLVE 757 (782)
T ss_pred EEECchHHHHHHhCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCCCC-----CH-----HHHHHHHH
Confidence 9999999997 3432 578888899999999999999987653310 12 23466788
Q ss_pred cCCceeeecccCCCCCCHHHHHHHHHHHHHHHhc
Q 010627 319 DGTDCVMLSGETAAGAYPEVAVRTMAQICVEAES 352 (505)
Q Consensus 319 ~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~ 352 (505)
.|++.+.++.+ ++..++..++++|+
T Consensus 758 ~G~~~ls~~~d---------~~~~~k~~i~~~e~ 782 (782)
T TIGR01418 758 EGIDSISLNPD---------AVLRTRLQVAEVEK 782 (782)
T ss_pred cCCCEEEECcc---------hHHHHHHHHHHhcC
Confidence 99999999765 44556666666663
No 27
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=99.27 E-value=2.1e-11 Score=139.16 Aligned_cols=150 Identities=19% Similarity=0.169 Sum_probs=121.1
Q ss_pred CCChhcHHHHHhcccc-cCCCE--EEEcCCCChhHHHHHHHHHhcc-----CCCceEEEEecCHHHHhcHHHHHhcCCee
Q 010627 184 TLTEKDKEDILKWGIP-NQIDM--IALSFVRKGSDLVGVRKLLGGH-----AKNILLMSKVENQEGVANFDDILANSDAF 255 (505)
Q Consensus 184 ~lte~D~~di~~~al~-~g~d~--V~~sfV~sa~dv~~v~~~l~~~-----~~~~~IiakIEt~~av~nldeI~~~sDgI 255 (505)
.+-+...+.| ..+++ .|++. |++|||+|+++++++++.++.. +.++++++|||++.|+.|+|+|+++.|++
T Consensus 617 ~lf~~qlraI-~rald~~G~~~~~ImvPmV~s~eEa~~~~~~~~~~g~~~~~~~~~vg~MIEtp~av~~~deIa~~vDfi 695 (795)
T PRK06464 617 EAFALECEAI-KRVREEMGLTNVEVMIPFVRTVEEAEKVIELLAENGLKRGENGLKVIMMCEIPSNALLAEEFLEYFDGF 695 (795)
T ss_pred HHHHHHHHHH-HHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEEcCHHHHHHHHHHHHhCCEE
Confidence 4566778888 88888 79988 9999999999999999988644 23689999999999999999999999999
Q ss_pred EEecCcccCc-CCc---------------hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHc
Q 010627 256 MVARGDLGME-IPI---------------EKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLD 319 (505)
Q Consensus 256 mIaRgDLg~e-~~~---------------~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~ 319 (505)
+||++||+.. ++. +.+..+.++++++|+++|||+.++.+|... .| ..+...+..
T Consensus 696 ~IGtnDLtq~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~vgicge~a~~-----~p-----~~~~~l~~~ 765 (795)
T PRK06464 696 SIGSNDLTQLTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYVGICGQAPSD-----HP-----DFAEWLVEE 765 (795)
T ss_pred EECchHHHHHHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCEEEEcCCCCCC-----cH-----HHHHHHHHC
Confidence 9999999973 432 478888899999999999999987765411 02 223567788
Q ss_pred CCceeeecccCCCCCCHHHHHHHHHHHHHHHhcc
Q 010627 320 GTDCVMLSGETAAGAYPEVAVRTMAQICVEAEST 353 (505)
Q Consensus 320 G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~ 353 (505)
|++.+.++.+ ++-.++..++++|+.
T Consensus 766 G~~~ls~~~d---------~~~~~k~~i~~~~~~ 790 (795)
T PRK06464 766 GIDSISLNPD---------AVVDTWLAVAEVEKK 790 (795)
T ss_pred CCCEEEEcch---------hHHHHHHHHHHhHHH
Confidence 9999999755 455566667777764
No 28
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=99.24 E-value=4.1e-11 Score=121.99 Aligned_cols=132 Identities=17% Similarity=0.178 Sum_probs=102.6
Q ss_pred hcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhcc-------CCCceEEEEecCHHHHhcHHHHHhcC---CeeEE
Q 010627 188 KDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGH-------AKNILLMSKVENQEGVANFDDILANS---DAFMV 257 (505)
Q Consensus 188 ~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~-------~~~~~IiakIEt~~av~nldeI~~~s---DgImI 257 (505)
....|| +..++.|+++|++|+|++++|++.+.+++... +.++.++++|||++|+.|+++|++.+ |++++
T Consensus 73 ~~~~di-~~~l~~g~~givlPKv~s~~~v~~~~~~l~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eIa~a~~rv~~l~~ 151 (288)
T TIGR01588 73 FGLADI-KAVVKAGVDVVRLPKTDTAEDIHELEKLIERIEKEIGREVGSTKLMAAIESALGVVNAVEIARASKRLMGIAL 151 (288)
T ss_pred hHHHHH-HHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEeCCHHHHHhHHHHHhcCCcceEEEe
Confidence 445677 77789999999999999999999999887532 23578999999999999999999653 79999
Q ss_pred ecCcccCcCCch------hHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeee
Q 010627 258 ARGDLGMEIPIE------KIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 326 (505)
Q Consensus 258 aRgDLg~e~~~~------~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imL 326 (505)
|+.||+.++|.. ++..++.+++.+|+++|+|+|.. -..+ -.=...=..+..++-..|++|=+.
T Consensus 152 G~~Dls~~lG~~~~~~~~~~~~ar~~iv~aaraag~~~id~-v~~~-----~~d~~~l~~~~~~~~~~Gf~Gk~~ 220 (288)
T TIGR01588 152 GAEDYVTDMKTSRSPDGTELFYARCAILHAARAAGIAAFDT-VYSD-----VNNEEGFLAEAQLIKQLGFDGKSL 220 (288)
T ss_pred CHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHcCCCcccC-CccC-----cCCHHHHHHHHHHHHHcCCCceec
Confidence 999999999863 68889999999999999998642 1111 000011114566688889887655
No 29
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=99.14 E-value=1.5e-10 Score=127.73 Aligned_cols=135 Identities=16% Similarity=0.104 Sum_probs=112.3
Q ss_pred cCCCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhc-----------cCCCceEEEEecCHHHHhcHHHHH
Q 010627 181 DLPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGG-----------HAKNILLMSKVENQEGVANFDDIL 249 (505)
Q Consensus 181 ~l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~-----------~~~~~~IiakIEt~~av~nldeI~ 249 (505)
.-|.+-....+.| ..+++.|...|++|||++++++++++++++. .+.++.+.++||++.|+.++|+|+
T Consensus 364 ~~~~lf~~QlrAI-~ra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia 442 (565)
T TIGR01417 364 EREEILRTQLRAI-LRASAYGKLRIMFPMVATVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLA 442 (565)
T ss_pred cCHHHHHHHHHHH-HHHHhcCCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHH
Confidence 3455666777888 8899999999999999999999999988753 245789999999999999999999
Q ss_pred hcCCeeEEecCcccCc----------CCc------hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHH
Q 010627 250 ANSDAFMVARGDLGME----------IPI------EKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDV 313 (505)
Q Consensus 250 ~~sDgImIaRgDLg~e----------~~~------~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv 313 (505)
+.+|+++||+.||+.. ++. +.|..+.++++++|+++|||+.++.+|-- .| ..+
T Consensus 443 ~~vDf~sIGtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a~------~p-----~~~ 511 (565)
T TIGR01417 443 KEVDFFSIGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMAG------DE-----RAI 511 (565)
T ss_pred hhCCEEEEChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcCC------CH-----HHH
Confidence 9999999999999872 432 57888899999999999999998665431 12 345
Q ss_pred HHHHHcCCceeeec
Q 010627 314 ANAVLDGTDCVMLS 327 (505)
Q Consensus 314 ~nav~~G~D~imLs 327 (505)
...+..|++.+.++
T Consensus 512 ~~l~~~G~~~lsv~ 525 (565)
T TIGR01417 512 PLLLGLGLRELSMS 525 (565)
T ss_pred HHHHHCCCCEEEEC
Confidence 67888999998875
No 30
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=99.05 E-value=5.2e-10 Score=123.54 Aligned_cols=135 Identities=13% Similarity=0.045 Sum_probs=112.1
Q ss_pred cCCCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhc-----------cCCCceEEEEecCHHHHhcHHHHH
Q 010627 181 DLPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGG-----------HAKNILLMSKVENQEGVANFDDIL 249 (505)
Q Consensus 181 ~l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~-----------~~~~~~IiakIEt~~av~nldeI~ 249 (505)
.-|.+.....+.| ..+.+.|...|++|||.++++++++++.++. .+.++.+.++||+|.|+.|+|+|+
T Consensus 365 ~~~~~f~~QlrAi-lra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~mIE~p~a~~~~d~i~ 443 (575)
T PRK11177 365 DRKEILHDQLRAI-LRASAFGKLRIMFPMIISVEEVRELKAEIEILKQELRDEGKAFDESIEIGVMVETPAAAVIARHLA 443 (575)
T ss_pred CCHHHHHHHHHHH-HHHHcCCCcEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhccccCCCcEEEEEEeCHHHHHhHHHHH
Confidence 3456667777888 8889999999999999999999999987752 245789999999999999999999
Q ss_pred hcCCeeEEecCcccCcC-----C-----------chhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHH
Q 010627 250 ANSDAFMVARGDLGMEI-----P-----------IEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDV 313 (505)
Q Consensus 250 ~~sDgImIaRgDLg~e~-----~-----------~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv 313 (505)
+..|++.||+.||+..+ + .+.+..+.++++++|+++|||+.++.+|=. .|.. +
T Consensus 444 ~~vDf~sIGtnDL~qy~la~dr~n~~v~~~~~~~hPav~~~i~~v~~~a~~~g~~v~vCGe~A~------dp~~-----~ 512 (575)
T PRK11177 444 KEVDFFSIGTNDLTQYTLAVDRGNELISHLYNPMSPSVLNLIKQVIDASHAEGKWTGMCGELAG------DERA-----T 512 (575)
T ss_pred hhCCEEEECcHHHHHHHHHhccCCchhhccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCCC------CHHH-----H
Confidence 99999999999999833 1 257888889999999999999999988642 2322 3
Q ss_pred HHHHHcCCceeeec
Q 010627 314 ANAVLDGTDCVMLS 327 (505)
Q Consensus 314 ~nav~~G~D~imLs 327 (505)
.-.+..|.|-+-.+
T Consensus 513 ~lLlglGi~~lSm~ 526 (575)
T PRK11177 513 LLLLGMGLDEFSMS 526 (575)
T ss_pred HHHHHCCCCeEEEC
Confidence 55788899998775
No 31
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism]
Probab=98.67 E-value=5.5e-08 Score=98.22 Aligned_cols=133 Identities=20% Similarity=0.245 Sum_probs=104.4
Q ss_pred hhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCce---EEEEecCHHHHhcHHHHHhcC---CeeEEecC
Q 010627 187 EKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNIL---LMSKVENQEGVANFDDILANS---DAFMVARG 260 (505)
Q Consensus 187 e~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~---IiakIEt~~av~nldeI~~~s---DgImIaRg 260 (505)
++-..|| ......++|+|.+|+++++.|+..+...+.+...... +++.|||++|+.|..+|+..+ .|+.+|..
T Consensus 67 ~~g~~Dl-~av~~~~~d~v~LPK~e~~~~v~~~~~~l~~~~~~~~~~~l~a~iETa~gv~~~~eIA~a~~~l~~l~~Ga~ 145 (283)
T COG2301 67 PWGADDL-AAVVRSAVDGVVLPKVESAADVEELDQLLREAEAAAGREILIALIETARGVLNAEEIAAASGRLVGLAFGAN 145 (283)
T ss_pred hhhHHHH-HHHHhcCCCEEEccCcCchHHHHHHHHHhhhhhccccchhhHHhhhcHHHHhCHHHHhcCccceeeeEecHH
Confidence 3455666 6667889999999999999999999999976654434 999999999999999999987 79999999
Q ss_pred cccCcCCch-------hHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeee
Q 010627 261 DLGMEIPIE-------KIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 326 (505)
Q Consensus 261 DLg~e~~~~-------~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imL 326 (505)
||..+++.. .+..+..+|+.+|+.+|++.+.. -.- =+++|.- =..+..++...|+||-++
T Consensus 146 Dl~~~~g~~~~~~~~~~l~~ar~~iv~Aara~Gi~a~D~-V~~--d~~d~~g---~~~e~~~a~~~Gf~GK~~ 212 (283)
T COG2301 146 DLAADLGARRSPDGTDPLRYARAMIVLAARAAGLAAIDG-VYT--DINDPEG---FAREAAQAAALGFDGKTC 212 (283)
T ss_pred HHHHHhCCCCCCCCcchHHHHHHHHHHHHHHcCCCcccc-ccc--ccCCHHH---HHHHHHHHHHcCCCcccc
Confidence 999888752 67789999999999999998642 100 0111111 125677888999998776
No 32
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=98.57 E-value=1.7e-06 Score=93.80 Aligned_cols=147 Identities=16% Similarity=0.179 Sum_probs=104.7
Q ss_pred CCccccCCCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhcc----C---CCceEEEEecCHHHHhcHHHH
Q 010627 176 PGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGH----A---KNILLMSKVENQEGVANFDDI 248 (505)
Q Consensus 176 p~~~~~l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~----~---~~~~IiakIEt~~av~nldeI 248 (505)
|+.-++.-.+.-.|.+.+...+ .|+ ||.+|++++++|++.+.+.+... | ..++++++|||+.|+-|++||
T Consensus 162 ~~~l~Dfgl~~fhd~~~l~~~g--~gp-yi~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EI 238 (511)
T cd00727 162 SGSLFDFGLYFFHNAKALLARG--SGP-YFYLPKMESHLEARLWNDVFVFAQDYLGLPRGTIKATVLIETLPAAFEMDEI 238 (511)
T ss_pred cchhhhHHHHHHhhHHHHHhcC--CCc-EEecCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecCHHHHHHHHHH
Confidence 5555555444555655552222 368 99999999999999998887532 2 358899999999999999999
Q ss_pred HhcC----CeeEEecCcccCcCC----c-------h--------hHHHH-HHHHHHHHHHcCCCeEEehhhhHhhhcCCC
Q 010627 249 LANS----DAFMVARGDLGMEIP----I-------E--------KIFLA-QKVMIYKCNIQGKPVVTATQMLESMIKSPR 304 (505)
Q Consensus 249 ~~~s----DgImIaRgDLg~e~~----~-------~--------~v~~~-qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ 304 (505)
+..+ .|+..||.|+..++. . + .+..+ ++.++.+|+++|+..|.. |-- -.
T Consensus 239 a~alr~Rl~gLn~G~~Dy~~sli~~~~~~~~~v~pdr~~v~m~~~~l~Ay~~llV~aa~a~G~~AIdG------m~a-~i 311 (511)
T cd00727 239 LYELRDHSAGLNCGRWDYIFSFIKKFRNHPDFVLPDRAQVTMTVPFMRAYSELLIKTCHRRGAHAMGG------MAA-QI 311 (511)
T ss_pred HHhccCceEEEEcChHHHHHHHHHhhccCCCccCCcccccccchHHHHHHHHHHHHHHHHcCCCcccc------hhh-cC
Confidence 9764 599999999999872 1 0 23444 677999999999998752 211 12
Q ss_pred CCh-HH----------HHHHHHHHHcCCceeeecccCCCCCCHHHH
Q 010627 305 PTR-AE----------ATDVANAVLDGTDCVMLSGETAAGAYPEVA 339 (505)
Q Consensus 305 ptr-aE----------v~Dv~nav~~G~D~imLs~Eta~G~yP~~~ 339 (505)
|.+ .+ ..|-.....+|+||-++ -+|-++
T Consensus 312 p~kdd~~~n~~~l~~~r~dk~~~~~lGfDGkwv-------iHP~qV 350 (511)
T cd00727 312 PIKDDPAANEAALAKVRADKLREATAGHDGTWV-------AHPGLV 350 (511)
T ss_pred CcccchhhHHHHHHHHHHHHHHHHhCCCCcccc-------cCHHHH
Confidence 322 11 35667788999999887 567543
No 33
>TIGR01344 malate_syn_A malate synthase A. This model represents plant malate synthase and one of two bacterial forms, designated malate synthase A. The distantly related malate synthase G is described by a separate model. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.
Probab=98.49 E-value=4e-06 Score=90.82 Aligned_cols=141 Identities=16% Similarity=0.156 Sum_probs=99.2
Q ss_pred CCccccCCCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhcc----C---CCceEEEEecCHHHHhcHHHH
Q 010627 176 PGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGH----A---KNILLMSKVENQEGVANFDDI 248 (505)
Q Consensus 176 p~~~~~l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~----~---~~~~IiakIEt~~av~nldeI 248 (505)
|+.-+++-.+...|.+.+.+. ..| .+|.+|++++++|++.+.+.+... | ..++++++|||+.|+-|++||
T Consensus 163 ~~~l~Dfgl~~~hd~~~l~~~--g~G-p~i~LPKves~~Ev~~~~~vf~~aE~~lglp~gtIk~~vlIET~~A~~nm~EI 239 (511)
T TIGR01344 163 PGSLFDFGLYFFHNARALLKK--GKG-PYFYLPKLESHQEARLWNDVFHFAQDFLGLPRGTIKATVLIETLPAAFEMDEI 239 (511)
T ss_pred chHHHHHHHHHHhhHHHHHhC--CCC-CEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCHHHHHhHHHH
Confidence 455555555566666555222 125 499999999999999998877532 1 358899999999999999999
Q ss_pred HhcC----CeeEEecCcccCcCC----c----------------hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCC
Q 010627 249 LANS----DAFMVARGDLGMEIP----I----------------EKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPR 304 (505)
Q Consensus 249 ~~~s----DgImIaRgDLg~e~~----~----------------~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ 304 (505)
+..+ .|+..||.|+..++. . +-+...++.++.+|+++|+.+|.. |- .-.
T Consensus 240 a~alr~Rl~gLn~G~~Dy~~S~ik~~~~~~~~~~pdr~~~~m~~~~l~Ay~~llV~aara~G~~AIdG------m~-a~i 312 (511)
T TIGR01344 240 LYELREHISGLNCGRWDYIFSFIKTLRNLPEFVLPDRDAVTMTKPFLNAYSKLLIQTCHRRGAHAMGG------MA-AFI 312 (511)
T ss_pred HHhccCceeEEEcChHHhhhhHHHHHhhCCCCcCCcccccccccHHHHHHHHHHHHHHHHcCCCccCc------hh-ccC
Confidence 9763 599999999994433 1 233344788889999999998752 21 111
Q ss_pred CCh--H------H---HHHHHHHHHcCCceeee
Q 010627 305 PTR--A------E---ATDVANAVLDGTDCVML 326 (505)
Q Consensus 305 ptr--a------E---v~Dv~nav~~G~D~imL 326 (505)
|.+ . - ..|-.....+|+||-++
T Consensus 313 p~k~D~~~n~~al~~vr~dk~re~~lGfDGkwv 345 (511)
T TIGR01344 313 PIKGDPAANEAAMNKVRADKIREAKNGHDGTWV 345 (511)
T ss_pred CcccChhhHHHHHHHHHHHHHHHHhCCCCcccc
Confidence 222 1 1 35666788999999877
No 34
>PRK09255 malate synthase; Validated
Probab=98.41 E-value=9.3e-06 Score=88.51 Aligned_cols=146 Identities=16% Similarity=0.187 Sum_probs=103.3
Q ss_pred CCccccCCCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhcc----C---CCceEEEEecCHHHHhcHHHH
Q 010627 176 PGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGH----A---KNILLMSKVENQEGVANFDDI 248 (505)
Q Consensus 176 p~~~~~l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~----~---~~~~IiakIEt~~av~nldeI 248 (505)
|+.-++.-.+.-.|.+.+... -.|+ +|.+|++++++|++.+.+.+... | ..++++++|||+.|+-|++||
T Consensus 183 ~~~l~Dfgl~~fhd~~~l~~~--g~gp-~i~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EI 259 (531)
T PRK09255 183 SGSLFDFALYFFHNAKELLAK--GSGP-YFYLPKLESHLEARLWNDVFVFAEDRLGLPRGTIKATVLIETLPAAFEMDEI 259 (531)
T ss_pred chhHHHHHHHHHhhHHHHHhC--CCCc-EEeccCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecCHHHHHHHHHH
Confidence 444455544444566655222 4577 99999999999999998888532 2 358899999999999999999
Q ss_pred HhcC----CeeEEecCcccCc----CCc-------h--------hHHH-HHHHHHHHHHHcCCCeEEehhhhHhhhcCCC
Q 010627 249 LANS----DAFMVARGDLGME----IPI-------E--------KIFL-AQKVMIYKCNIQGKPVVTATQMLESMIKSPR 304 (505)
Q Consensus 249 ~~~s----DgImIaRgDLg~e----~~~-------~--------~v~~-~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ 304 (505)
+..+ .|+..||.|+..+ ++. . .+.. .++.++.+|+++|...|.. | ....
T Consensus 260 a~a~r~Rl~gLn~G~~Dy~~S~ik~~~~~~~~~~pdR~~v~m~~~~l~Ay~~llV~aara~G~~AIdG------m-~a~i 332 (531)
T PRK09255 260 LYELREHIAGLNCGRWDYIFSYIKTLKNHPDFVLPDRAQVTMTKPFMRAYSRLLIKTCHKRGAHAMGG------M-AAFI 332 (531)
T ss_pred HHhccCceEEEEcChHHhhhhHHHHhccCCCCcCCcccccccchHHHHHHHHHHHHHHHHcCCCccCc------h-hhcC
Confidence 9764 4999999999965 221 0 2334 4788889999999998752 2 1113
Q ss_pred CCh----------HH-HHHHHHHHHcCCceeeecccCCCCCCHHH
Q 010627 305 PTR----------AE-ATDVANAVLDGTDCVMLSGETAAGAYPEV 338 (505)
Q Consensus 305 ptr----------aE-v~Dv~nav~~G~D~imLs~Eta~G~yP~~ 338 (505)
|.+ +. ..|-.....+|+||-++ -+|-+
T Consensus 333 p~k~D~~~n~~a~~g~r~dk~r~~~lGfDGkwv-------iHP~q 370 (531)
T PRK09255 333 PIKNDPEANEAALAKVRADKEREANDGHDGTWV-------AHPGL 370 (531)
T ss_pred CcccChhhhHHHHHHHHHHHHHHHhCCCCccee-------cCHHH
Confidence 322 11 25566788999999887 57844
No 35
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=98.37 E-value=1.2e-06 Score=89.45 Aligned_cols=134 Identities=16% Similarity=0.166 Sum_probs=101.4
Q ss_pred CCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhcc-----------CCCceEEEEecCHHHHhcHHHHHhc
Q 010627 183 PTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGH-----------AKNILLMSKVENQEGVANFDDILAN 251 (505)
Q Consensus 183 ~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~-----------~~~~~IiakIEt~~av~nldeI~~~ 251 (505)
|.+-....+.| ..+...|-=.|++|||++.+++.++++++.+. +.++++-++||+|.++--++++++.
T Consensus 119 p~~f~~QlrAi-lra~~~g~l~Im~PmV~~~~E~~~~~~~l~~~~~~L~~~g~~~~~~~~vG~MiEvPsaal~~~~~~~~ 197 (293)
T PF02896_consen 119 PELFRTQLRAI-LRAAAEGNLRIMFPMVSTVEEVREAKEILEEVKEELREEGIPFDPDLPVGIMIEVPSAALMADEFAKE 197 (293)
T ss_dssp HHHHHHHHHHH-HHHHHHSEEEEEESS--SHHHHHHHHHHHHHHHHHHHHHTCTTGTT-EEEEEE-SHHHHHTHHHHHTT
T ss_pred hhhHHHHHHHH-HHHHhhcCCEEEecCCCcHHHHHHHHHHHHHHHHHHHHhccCccccceEEEEechhHHHHHHHHHHHH
Confidence 55566677788 66666776679999999999999999987544 3568999999999999999999999
Q ss_pred CCeeEEecCcccC-----cCC-----------chhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHH
Q 010627 252 SDAFMVARGDLGM-----EIP-----------IEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVAN 315 (505)
Q Consensus 252 sDgImIaRgDLg~-----e~~-----------~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~n 315 (505)
+|.+-||-.||.- +=. .+.+..+.++++++|+++||||.++.+|-. +-.-+..
T Consensus 198 ~DF~SIGtNDLtQy~la~DR~n~~v~~~~d~~~Pavl~li~~vi~~a~~~g~~vsvCGe~a~-----------~p~~~~~ 266 (293)
T PF02896_consen 198 VDFFSIGTNDLTQYTLAADRDNARVAYLYDPLHPAVLRLIKQVIDAAHKAGKPVSVCGEMAS-----------DPEAIPL 266 (293)
T ss_dssp SSEEEEEHHHHHHHHHTS-TTCCTCGGGS-TTSHHHHHHHHHHHHHHHHTT-EEEEESGGGG-----------SHHHHHH
T ss_pred CCEEEEChhHHHHHHhhcCCCCcchhhhcCcchHHHHHHHHHHHHHHhhcCcEEEEecCCCC-----------CHHHHHH
Confidence 9999999888832 111 146778889999999999999999999763 2233466
Q ss_pred HHHcCCceeeecc
Q 010627 316 AVLDGTDCVMLSG 328 (505)
Q Consensus 316 av~~G~D~imLs~ 328 (505)
.+..|+|.+..+.
T Consensus 267 Ll~lGi~~lSv~p 279 (293)
T PF02896_consen 267 LLGLGIRSLSVSP 279 (293)
T ss_dssp HHHHT-SEEEE-G
T ss_pred HHHcCCCEEEECH
Confidence 7889999998873
No 36
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=98.30 E-value=3e-05 Score=84.75 Aligned_cols=126 Identities=13% Similarity=0.099 Sum_probs=90.5
Q ss_pred CCCEEEEcCCCChhHHHHHHHHHhccC-------CCceEEEEecCHHHHhcHHHHHhcC----CeeEEecCcccCcCCch
Q 010627 201 QIDMIALSFVRKGSDLVGVRKLLGGHA-------KNILLMSKVENQEGVANFDDILANS----DAFMVARGDLGMEIPIE 269 (505)
Q Consensus 201 g~d~V~~sfV~sa~dv~~v~~~l~~~~-------~~~~IiakIEt~~av~nldeI~~~s----DgImIaRgDLg~e~~~~ 269 (505)
+--||.+|++++++|++.+.+.+.... ..+++++.|||+.|+-|++||+..+ .|+..|+.|+..+++..
T Consensus 184 ~gpyi~LPKves~~Ev~~~~~~~~~~E~~~gl~~gtiki~vlIET~~a~~~~~eIa~alr~rv~gLn~G~~Dy~~sli~~ 263 (511)
T cd00480 184 SGPYFYLPKMESPLEARLWNDVFSRAEDYLGLPRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSEIKT 263 (511)
T ss_pred CCcEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEECCHHHHHHHHHHHHhccCcceeeecChHHHHHHhccc
Confidence 344788999999999999998875422 2588999999999999999999873 49999999999988421
Q ss_pred -------------------h-HHHHHHHHHHHHHHcCCCeEE--ehhhh-HhhhcCCCCChHH-HHHHHHHHHcCCceee
Q 010627 270 -------------------K-IFLAQKVMIYKCNIQGKPVVT--ATQML-ESMIKSPRPTRAE-ATDVANAVLDGTDCVM 325 (505)
Q Consensus 270 -------------------~-v~~~qk~Ii~~~~~~gkpvi~--ATqmL-eSM~~~~~ptraE-v~Dv~nav~~G~D~im 325 (505)
. +...+++++.+|+++|.+.|. +.|+- ..|-..+...-+- ..|...+...|+||-+
T Consensus 264 ~~~~~~~~~pd~~~~~m~~~~l~ay~~~lv~aa~a~G~~AIdg~~a~i~~k~d~~~~~~d~~gl~~dk~~~~~~GfdGkw 343 (511)
T cd00480 264 FRNHPDFVLPDRAKVTMTSPFMRAYEKLLVKTCHRRGAHAMGGMAAQIPIKGDPAANEAAMAKVRADKLREAKAGHDGTW 343 (511)
T ss_pred cccCccccCCcccccccccHHHHHHHHHHHHHHHHcCCCccccchhhccccCCcccchhHHHHHHHHHHHHHhCCCCccc
Confidence 2 555678899999999998742 22221 0110000001111 2566778899999977
Q ss_pred e
Q 010627 326 L 326 (505)
Q Consensus 326 L 326 (505)
.
T Consensus 344 v 344 (511)
T cd00480 344 V 344 (511)
T ss_pred c
Confidence 7
No 37
>PLN02626 malate synthase
Probab=98.11 E-value=6.3e-05 Score=81.82 Aligned_cols=122 Identities=15% Similarity=0.163 Sum_probs=88.3
Q ss_pred CEEEEcCCCChhHHHHHHHHHhcc-------CCCceEEEEecCHHHHhcHHHHHhcC----CeeEEecCcc----cCcCC
Q 010627 203 DMIALSFVRKGSDLVGVRKLLGGH-------AKNILLMSKVENQEGVANFDDILANS----DAFMVARGDL----GMEIP 267 (505)
Q Consensus 203 d~V~~sfV~sa~dv~~v~~~l~~~-------~~~~~IiakIEt~~av~nldeI~~~s----DgImIaRgDL----g~e~~ 267 (505)
-||.+|++++++|++...+.+... ...+++.+.|||..|+-|++||+..+ -|+..||-|+ ...++
T Consensus 213 pYfyLPKles~~Ear~w~dvf~~~E~~lGlp~GTIK~~vLIET~~A~f~meEIl~elr~r~agLn~GrwDyifS~ik~l~ 292 (551)
T PLN02626 213 PFFYLPKMEHSREARLWNDVFEAAEKMAGIPRGSIRATVLIETLPAVFQMEEILYELRDHSAGLNCGRWDYIFSFVKTFR 292 (551)
T ss_pred ceEeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeccHHHHHHHHHHHHHhhhheeeeecChHHHHhHHHHHhc
Confidence 489999999999999998877422 14589999999999999999999765 4999999999 22221
Q ss_pred --------c-h----hHHHHHH---HHHHHHHHcCCCeEEehhhhHhh--hcCCCCChHHH----HHHHHHHHcCCceee
Q 010627 268 --------I-E----KIFLAQK---VMIYKCNIQGKPVVTATQMLESM--IKSPRPTRAEA----TDVANAVLDGTDCVM 325 (505)
Q Consensus 268 --------~-~----~v~~~qk---~Ii~~~~~~gkpvi~ATqmLeSM--~~~~~ptraEv----~Dv~nav~~G~D~im 325 (505)
- . ..+.++. .++.+|+++|...|-. |---+ .+.|.++.... .|-.....+|+||-+
T Consensus 293 ~~~~~vlpDr~~vtM~~~f~rAY~~llV~ach~rG~~AIgG--M~a~iP~kdd~~~n~~al~~vr~dk~re~~~GfDG~w 370 (551)
T PLN02626 293 AHPDRLLPDRVQVGMTQHFMKSYVDLLIKTCHKRGVHAMGG--MAAQIPIKDDPAANEAALALVRKDKLREVRAGHDGTW 370 (551)
T ss_pred cCCCCCCCCccccchhhHHHHHHHHHHHHHHHhcCCccccc--ccccccCCCChhhhHHHHHHHHHHHHHHHhcCCCcee
Confidence 1 1 2555555 9999999999997642 22111 12233332222 466678999999988
Q ss_pred e
Q 010627 326 L 326 (505)
Q Consensus 326 L 326 (505)
+
T Consensus 371 V 371 (551)
T PLN02626 371 A 371 (551)
T ss_pred e
Confidence 8
No 38
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=97.33 E-value=0.00026 Score=81.15 Aligned_cols=146 Identities=15% Similarity=0.104 Sum_probs=107.7
Q ss_pred CCCChhcHHHHHhcccc-cCCCEEEEcCCCChhHHHHHHHHHhc--------cC---CCceEEEEecCHHHHhcHHHHHh
Q 010627 183 PTLTEKDKEDILKWGIP-NQIDMIALSFVRKGSDLVGVRKLLGG--------HA---KNILLMSKVENQEGVANFDDILA 250 (505)
Q Consensus 183 ~~lte~D~~di~~~al~-~g~d~V~~sfV~sa~dv~~v~~~l~~--------~~---~~~~IiakIEt~~av~nldeI~~ 250 (505)
|.+.....+.| ..+.. .|-=.|++|||.+.+++.++++++.+ .| .++++=+|||+|.|+--+|++++
T Consensus 532 ~~~f~~QlrAi-lra~~~~g~l~im~Pmv~~~~E~~~~~~~~~~~~~~l~~~~~~~~~~~~~G~MiE~Paa~~~~~~~a~ 610 (748)
T PRK11061 532 PEIFLIQVRAM-LRANAATGNLSILLPMVTSIDEVDEARRLIDRAGREVEEMLGYEIPKPRIGIMIEVPSMVFMLPHLAS 610 (748)
T ss_pred HHHHHHHHHHH-HHHHhhCCCeEEEhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEEehHHHHHHHHHHHH
Confidence 44445556666 44443 56667999999999999999998863 12 23779999999999999999999
Q ss_pred cCCeeEEecCcccCcC-----C-----------chhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHH
Q 010627 251 NSDAFMVARGDLGMEI-----P-----------IEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVA 314 (505)
Q Consensus 251 ~sDgImIaRgDLg~e~-----~-----------~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~ 314 (505)
.+|.+=||-.||.-=+ . .+.|..+.++++++|+++||||.++.+|=. .|... .
T Consensus 611 ~~DF~SIGtNDL~Qy~la~DR~n~~v~~~~~~~~Pavlr~i~~~~~~a~~~g~~v~vCGe~a~------dp~~~-----~ 679 (748)
T PRK11061 611 RVDFISVGTNDLTQYLLAVDRNNTRVASLYDSLHPAMLRALKMIADEAEQHGLPVSLCGEMAG------DPMGA-----L 679 (748)
T ss_pred hCCEEEECccHHHHHHHHhcCCChHHHhhcCCCCHHHHHHHHHHHHHHhhCcCEEEEcCCccc------CHHHH-----H
Confidence 9999999999985211 1 146778889999999999999999988642 23332 5
Q ss_pred HHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHH
Q 010627 315 NAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVE 349 (505)
Q Consensus 315 nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~ 349 (505)
-.+..|.|-+-.+ | .++..++++++.
T Consensus 680 ~L~glGi~~lS~~--------~-~~i~~~k~~i~~ 705 (748)
T PRK11061 680 LLIGLGYRHLSMN--------G-RSVARVKYLLRH 705 (748)
T ss_pred HHHHCCCcEEccC--------h-HHHHHHHHHHHh
Confidence 5778899887664 2 344445555554
No 39
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=97.28 E-value=0.00093 Score=73.12 Aligned_cols=134 Identities=16% Similarity=0.131 Sum_probs=103.4
Q ss_pred CCCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHh-------cc----CCCceEEEEecCHHHHhcHHHHHh
Q 010627 182 LPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLG-------GH----AKNILLMSKVENQEGVANFDDILA 250 (505)
Q Consensus 182 l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~-------~~----~~~~~IiakIEt~~av~nldeI~~ 250 (505)
-|.+.....+.| .+|-.+|-=.|++|+|.|.++++++|+.+. .. +.++.+=.|||.|.|.-.+|.+++
T Consensus 367 ~~~if~tQLRAi-lRAS~~G~l~IM~PMI~~~~Ei~~~k~~~~~~k~~Lr~eg~~~~~~i~lGiMIEvPsAa~~a~~lak 445 (574)
T COG1080 367 RPEIFRTQLRAI-LRASAHGNLRIMFPMIASLEEIRWAKALLEEAKQELRAEGLAFDEKIELGIMIEVPSAALIADQLAK 445 (574)
T ss_pred cHHHHHHHHHHH-HHhhccCCeEEEEeccccHHHHHHHHHHHHHHHHHHHhcCCccccccceeEEEehhHHHHHHHHHHH
Confidence 345555566777 677788999999999999999999998774 11 236888999999999999999999
Q ss_pred cCCeeEEecCcccC-----cCC-----------chhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHH
Q 010627 251 NSDAFMVARGDLGM-----EIP-----------IEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVA 314 (505)
Q Consensus 251 ~sDgImIaRgDLg~-----e~~-----------~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~ 314 (505)
.+|-+=||-.||.- +=+ .+.|..+.+++++.++++||||+++.+|=- .|. -+-
T Consensus 446 evDFfSIGTNDLtQYtLA~DR~n~~vs~ly~pl~PAVLrlI~~vi~~ah~~gkwvgmCGElAg------D~~-----a~p 514 (574)
T COG1080 446 EVDFFSIGTNDLTQYTLAVDRGNAKVSHLYDPLHPAVLRLIKQVIDAAHRHGKWVGMCGELAG------DPA-----ATP 514 (574)
T ss_pred hCCEeeecccHHHHHHHHHhcCChhhhhhcCCCCHHHHHHHHHHHHHHHHcCCeeeechhhcc------Chh-----hHH
Confidence 99999999999852 111 147778889999999999999999887541 121 123
Q ss_pred HHHHcCCceeeec
Q 010627 315 NAVLDGTDCVMLS 327 (505)
Q Consensus 315 nav~~G~D~imLs 327 (505)
-.+..|.|=+-.|
T Consensus 515 lLlGlGldElSms 527 (574)
T COG1080 515 LLLGLGLDELSMS 527 (574)
T ss_pred HHHhcCcchhccC
Confidence 3667787776655
No 40
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=97.10 E-value=0.0027 Score=73.80 Aligned_cols=136 Identities=16% Similarity=0.165 Sum_probs=100.1
Q ss_pred CCCCChhcHHHHHhcccc---cCC---CEEEEcCCCChhHHHHHHHHHhcc--------C--CCceEEEEecCHHHHhcH
Q 010627 182 LPTLTEKDKEDILKWGIP---NQI---DMIALSFVRKGSDLVGVRKLLGGH--------A--KNILLMSKVENQEGVANF 245 (505)
Q Consensus 182 l~~lte~D~~di~~~al~---~g~---d~V~~sfV~sa~dv~~v~~~l~~~--------~--~~~~IiakIEt~~av~nl 245 (505)
.|.+.+...+.|.+.+.+ .|. --|++|||.+.+++.++|+.+.+. | .++.|-++||+|.|.-.+
T Consensus 669 ~pei~~~QlrAil~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~k~~i~~~~~~l~~~~g~~~~~~iG~MiE~P~aal~a 748 (856)
T TIGR01828 669 YPEIYEMQVRAIMEAAVEVKKEGIDVHPEIMIPLVGEKNELKILKDVLEEVAAEVFKEYGVTVPYEIGTMIEIPRAALTA 748 (856)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccCCeEEEEEehHHHHHHH
Confidence 455556666666333333 163 279999999999999999887522 2 247899999999999999
Q ss_pred HHHHhcCCeeEEecCcccCc------------C------------Cc-----hhHHHHHHHHHHHHHH--cCCCeEEehh
Q 010627 246 DDILANSDAFMVARGDLGME------------I------------PI-----EKIFLAQKVMIYKCNI--QGKPVVTATQ 294 (505)
Q Consensus 246 deI~~~sDgImIaRgDLg~e------------~------------~~-----~~v~~~qk~Ii~~~~~--~gkpvi~ATq 294 (505)
|+|++.+|.+-||-.||.-- + |+ +.|..+.+.++++|++ +|+||.++.+
T Consensus 749 d~la~~~DFfSiGTNDLtQ~tlg~dR~~~~~~~~~y~~~~i~~~~P~~~ld~paV~~li~~~i~~a~~~~~~~~vgvCGE 828 (856)
T TIGR01828 749 DKIAEEADFFSFGTNDLTQMTFGFSRDDAGKFLPKYLEKGILEKDPFESLDQTGVGQLMRMAVEKGRQTRPNLKVGICGE 828 (856)
T ss_pred HHHHHhCCEEEECccHHHHHHhccCccchhhhHHHHHhcCcccCCcccccCcHHHHHHHHHHHHHHhhcCCCCEEEeCCC
Confidence 99999999999987776421 1 11 3467778999999998 8999999887
Q ss_pred hhHhhhcCCCCChHHHHHHHHHHHcCCceeeecc
Q 010627 295 MLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG 328 (505)
Q Consensus 295 mLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~ 328 (505)
+-. .|. -+...+..|.|-+..|.
T Consensus 829 ~a~------dp~-----~i~~l~~~Gi~~~S~sp 851 (856)
T TIGR01828 829 HGG------DPS-----SIEFCHKIGLNYVSCSP 851 (856)
T ss_pred CcC------CHH-----HHHHHHHCCCCEEEECh
Confidence 531 232 23556778999887763
No 41
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.81 E-value=0.011 Score=62.47 Aligned_cols=116 Identities=13% Similarity=0.112 Sum_probs=74.9
Q ss_pred hcccccCCCEEEEcC-------CCChhHHHHHHHHHhccCCCceEEE-EecCHHHHhcHHHHHhcCCeeEEecCcccCcC
Q 010627 195 KWGIPNQIDMIALSF-------VRKGSDLVGVRKLLGGHAKNILLMS-KVENQEGVANFDDILANSDAFMVARGDLGMEI 266 (505)
Q Consensus 195 ~~al~~g~d~V~~sf-------V~sa~dv~~v~~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~sDgImIaRgDLg~e~ 266 (505)
+.+.+.|+|+|.+.. ..+..+...+.+++++. +++||+ .|-|.+....+.+ .-+|+||+|+|-=+...
T Consensus 148 ~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIaG~V~t~e~A~~l~~--aGAD~V~VG~G~Gs~~~ 223 (368)
T PRK08649 148 PTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIVGGCVTYTTALHLMR--TGAAGVLVGIGPGAACT 223 (368)
T ss_pred HHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEEEeCCCCHHHHHHHHH--cCCCEEEECCCCCcCCC
Confidence 677899999999854 22332455566666653 577887 8888887766654 45899999988621111
Q ss_pred Cc--h--hHHHHH--HHHHHHHHHc-------CCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeee
Q 010627 267 PI--E--KIFLAQ--KVMIYKCNIQ-------GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 326 (505)
Q Consensus 267 ~~--~--~v~~~q--k~Ii~~~~~~-------gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imL 326 (505)
.. . .+|.+. ....++++++ +.|+|.+.-+-. -.|++.|+..|+|++|+
T Consensus 224 t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~------------~~diakAlalGAd~Vm~ 284 (368)
T PRK08649 224 SRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGT------------SGDIAKAIACGADAVML 284 (368)
T ss_pred CcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCC------------HHHHHHHHHcCCCeecc
Confidence 10 0 122221 2222233332 689998766543 37999999999999999
No 42
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=96.33 E-value=0.011 Score=68.81 Aligned_cols=136 Identities=16% Similarity=0.201 Sum_probs=100.7
Q ss_pred cCCCCChhcHHHHHhcccc---cCCC---EEEEcCCCChhHHHHHHHHHh--------ccCC--CceEEEEecCHHHHhc
Q 010627 181 DLPTLTEKDKEDILKWGIP---NQID---MIALSFVRKGSDLVGVRKLLG--------GHAK--NILLMSKVENQEGVAN 244 (505)
Q Consensus 181 ~l~~lte~D~~di~~~al~---~g~d---~V~~sfV~sa~dv~~v~~~l~--------~~~~--~~~IiakIEt~~av~n 244 (505)
..|.+.+-..+.|.+.+.+ .|.+ -|++|+|.+.++++.+|+.+. +.|. +.++=++||+|.|.--
T Consensus 674 ~~pei~~~QlrAI~~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~r~~i~~~~~~~~~e~g~~~~~~vG~MIEvP~Aal~ 753 (879)
T PRK09279 674 TYPEIYEMQARAIFEAAVELKKEGIDVVPEIMIPLVGTVKELKLVKAIIDAVAEEVFAEKGVKLDYKVGTMIELPRAALT 753 (879)
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEehHHHHHh
Confidence 3466667777777444443 3533 499999999999999998662 2232 4789999999999999
Q ss_pred HHHHHhcCCeeEEecCcccCc------------C------------Cc-----hhHHHHHHHHHHHHHH--cCCCeEEeh
Q 010627 245 FDDILANSDAFMVARGDLGME------------I------------PI-----EKIFLAQKVMIYKCNI--QGKPVVTAT 293 (505)
Q Consensus 245 ldeI~~~sDgImIaRgDLg~e------------~------------~~-----~~v~~~qk~Ii~~~~~--~gkpvi~AT 293 (505)
+|+|++.+|.+-||-.||.-- + |+ +.|..+.+..+++|++ .|+|+.++.
T Consensus 754 ad~iA~~adFfSiGTNDLTQ~t~g~dRdd~~~fl~~y~~~~i~~~dPf~~lD~~aV~~Li~~~v~~~r~~~~~~~vgICG 833 (879)
T PRK09279 754 ADEIAEEAEFFSFGTNDLTQTTFGFSRDDAGKFLPDYLEKGILEEDPFESLDQEGVGELVEIAVERGRATRPDLKLGICG 833 (879)
T ss_pred HHHHHHhCCEEEEcccHHHHHHhccCccchhhhHHHHHhcCcccCCcchhcChHHHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 999999999999988777421 1 11 2466777889999998 799999988
Q ss_pred hhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 294 QMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 294 qmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
++= ..| .-+...+..|.|-+-.|
T Consensus 834 E~g------gdp-----~~i~~l~~lGld~vS~s 856 (879)
T PRK09279 834 EHG------GDP-----ASIEFCHKVGLDYVSCS 856 (879)
T ss_pred CCc------cCH-----HHHHHHHHCCCCEEEEC
Confidence 743 123 23456777899998887
No 43
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=96.16 E-value=0.023 Score=62.01 Aligned_cols=90 Identities=16% Similarity=0.229 Sum_probs=77.6
Q ss_pred CCCEEEEcCCCChhHHHHHHHHHhccC-----------------------CCceEEEEecCHHHHhcHHHHHhc----C-
Q 010627 201 QIDMIALSFVRKGSDLVGVRKLLGGHA-----------------------KNILLMSKVENQEGVANFDDILAN----S- 252 (505)
Q Consensus 201 g~d~V~~sfV~sa~dv~~v~~~l~~~~-----------------------~~~~IiakIEt~~av~nldeI~~~----s- 252 (505)
.+-.|++||.++++|+.++..+.++.+ ..+.||..+|+.+++.|.++|+.. .
T Consensus 122 pIfEvIisMT~s~sdil~V~~l~~~a~~~~~~~~~~~~~~~~e~~~~~~~~~i~VIPLFEt~~dL~~a~~Il~~~l~~~~ 201 (506)
T TIGR02751 122 PIFEVILPMTTSADEILNVHQYYEKAVAGKQSIELYDEVTVKEWLGEFKPKKIRVIPLIEDKDSLLNADEIVKEYAEAHE 201 (506)
T ss_pred ceEEEEeeCCCCHHHHHHHHHHHHHhcccccccccccccchhcccccCCCCCcCeecCcCCHHHHHhHHHHHHHHHHhcC
Confidence 566899999999999999988776553 135799999999999999999985 1
Q ss_pred ---CeeEEecCcccCcCCc----hhHHHHHHHHHHHHHHcCCCeE
Q 010627 253 ---DAFMVARGDLGMEIPI----EKIFLAQKVMIYKCNIQGKPVV 290 (505)
Q Consensus 253 ---DgImIaRgDLg~e~~~----~~v~~~qk~Ii~~~~~~gkpvi 290 (505)
=-||+||.|=+.+.|. -.+..+|.++.+.|+++|.++.
T Consensus 202 ~~~qrVmLGySDSAkd~G~laA~~al~~Aq~~L~e~~ee~gV~l~ 246 (506)
T TIGR02751 202 PEYMRVFLARSDPALNYGMIAAVLSNKYALSRLYELSEETGISIY 246 (506)
T ss_pred cCceEEEEecccccchhhHHHHHHHHHHHHHHHHHHHHHcCCcEE
Confidence 1789999999999987 3788999999999999999974
No 44
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=95.93 E-value=0.043 Score=58.07 Aligned_cols=114 Identities=15% Similarity=0.274 Sum_probs=70.2
Q ss_pred hcccccCCCEEEEc-------CCCChhHHHHHHHHHhccCCCceEEE-EecCHHHHhcHHHHHhcCCeeEEecCcc----
Q 010627 195 KWGIPNQIDMIALS-------FVRKGSDLVGVRKLLGGHAKNILLMS-KVENQEGVANFDDILANSDAFMVARGDL---- 262 (505)
Q Consensus 195 ~~al~~g~d~V~~s-------fV~sa~dv~~v~~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~sDgImIaRgDL---- 262 (505)
+.+.+.|+|.|.+. |+....+-..+.+++.+. +++||+ .+-+.+....+-+ .-+|+||++||--
T Consensus 149 ~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IPVI~G~V~t~e~A~~~~~--aGaDgV~~G~gg~~~~~ 224 (369)
T TIGR01304 149 PIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVPVIAGGVNDYTTALHLMR--TGAAGVIVGPGGANTTR 224 (369)
T ss_pred HHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCCEEEeCCCCHHHHHHHHH--cCCCEEEECCCCCcccc
Confidence 67789999999975 222223444555555543 577777 7777766655444 3589999987542
Q ss_pred ---cCcCCchhHHHHHHHHHHHHH----Hc---CCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 263 ---GMEIPIEKIFLAQKVMIYKCN----IQ---GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 263 ---g~e~~~~~v~~~qk~Ii~~~~----~~---gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
+..+|. ..+-..+..+++ +. .+|+|.+.-+-. -.|++.|+..|+|++|+.
T Consensus 225 ~~lg~~~p~---~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~t------------g~di~kAlAlGAdaV~iG 284 (369)
T TIGR01304 225 LVLGIEVPM---ATAIADVAAARRDYLDETGGRYVHVIADGGIET------------SGDLVKAIACGADAVVLG 284 (369)
T ss_pred cccCCCCCH---HHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCC------------HHHHHHHHHcCCCEeeeH
Confidence 222221 111122222222 22 389998766543 368999999999999994
No 45
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=95.89 E-value=0.1 Score=54.31 Aligned_cols=124 Identities=21% Similarity=0.282 Sum_probs=77.4
Q ss_pred hhcHHHHHhcccccCCCEEEEcCCC-ChhHHHHHHHHHhccCCCceEEE-EecCHHHHhcHHHHHhcCCeeEEe--cCcc
Q 010627 187 EKDKEDILKWGIPNQIDMIALSFVR-KGSDLVGVRKLLGGHAKNILLMS-KVENQEGVANFDDILANSDAFMVA--RGDL 262 (505)
Q Consensus 187 e~D~~di~~~al~~g~d~V~~sfV~-sa~dv~~v~~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~sDgImIa--RgDL 262 (505)
+.+.+.+ +..++.|+|+|.+++-. +.+.+.+..+.+++...++.|++ .+.|++...++.+ .-+|+|.++ +|--
T Consensus 93 ~~~~~~~-~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~--aGaD~I~vg~g~G~~ 169 (325)
T cd00381 93 EDDKERA-EALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLID--AGADGVKVGIGPGSI 169 (325)
T ss_pred hhHHHHH-HHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHh--cCCCEEEECCCCCcC
Confidence 4556666 77889999999886532 22344444444555444577776 7777666654433 248999984 2211
Q ss_pred c--Cc---CCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeee
Q 010627 263 G--ME---IPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 326 (505)
Q Consensus 263 g--~e---~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imL 326 (505)
. .. .+.. ...+-..+.+.++..++|+|-+..+- .-.|++.++..|+|++|+
T Consensus 170 ~~t~~~~g~g~p-~~~~i~~v~~~~~~~~vpVIA~GGI~------------~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 170 CTTRIVTGVGVP-QATAVADVAAAARDYGVPVIADGGIR------------TSGDIVKALAAGADAVML 225 (325)
T ss_pred cccceeCCCCCC-HHHHHHHHHHHHhhcCCcEEecCCCC------------CHHHHHHHHHcCCCEEEe
Confidence 0 00 1111 22334566777778899998654433 246889999999999999
No 46
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=95.35 E-value=0.058 Score=58.83 Aligned_cols=93 Identities=18% Similarity=0.212 Sum_probs=79.4
Q ss_pred ccCCCEEEEcCCCChhHHHHHHHHHhccC--------------CCceEEEEecCHHHHhcHHHHHhc--C--------Ce
Q 010627 199 PNQIDMIALSFVRKGSDLVGVRKLLGGHA--------------KNILLMSKVENQEGVANFDDILAN--S--------DA 254 (505)
Q Consensus 199 ~~g~d~V~~sfV~sa~dv~~v~~~l~~~~--------------~~~~IiakIEt~~av~nldeI~~~--s--------Dg 254 (505)
...+..+++||.++++|+.++..++++.+ ..+.|+..+||.+.+.|.++|++. . --
T Consensus 119 ~~ai~~~IisMt~s~sdll~V~~l~k~~g~~l~~~e~~~~~~~~~i~vvPLfEt~~dL~~a~~i~~~ll~~~~~~~~~qe 198 (494)
T PRK13655 119 TQPIFEVILPMTTSAEELIEVQRYYEKVVAGVKVKEWIGEFEPKEIEVIPLFEDADALLNADEILEEYLKAKKPHGKYLR 198 (494)
T ss_pred chhhceEEecCCCCHHHHHHHHHHHHHHhHhhccccccCCCCcCCcceECCcCCHHHHHhHHHHHHHHHhchhhcCCeeE
Confidence 45677899999999999999988776554 147899999999999999999974 1 28
Q ss_pred eEEecCcccCcCCc----hhHHHHHHHHHHHHHHcCCCeEE
Q 010627 255 FMVARGDLGMEIPI----EKIFLAQKVMIYKCNIQGKPVVT 291 (505)
Q Consensus 255 ImIaRgDLg~e~~~----~~v~~~qk~Ii~~~~~~gkpvi~ 291 (505)
||+|+.|=+.+-|. -.+..+|.++.+.|+++|.++..
T Consensus 199 VmlGySDSakd~G~las~w~l~~A~~~L~~~~~~~gv~i~~ 239 (494)
T PRK13655 199 VFLARSDPAMNYGHIASVLSVKYALSRLYELEEELGVEIYP 239 (494)
T ss_pred EEEecccCccchhHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 99999999999987 38889999999999999998743
No 47
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=94.95 E-value=0.29 Score=51.53 Aligned_cols=124 Identities=20% Similarity=0.247 Sum_probs=81.3
Q ss_pred hhcHHHHHhcccccCCCEEEE--cCCCChhHHHHHHHHHhccCCCceEE-EEecCHHHHhcHHHHHhcCCeeEEecCccc
Q 010627 187 EKDKEDILKWGIPNQIDMIAL--SFVRKGSDLVGVRKLLGGHAKNILLM-SKVENQEGVANFDDILANSDAFMVARGDLG 263 (505)
Q Consensus 187 e~D~~di~~~al~~g~d~V~~--sfV~sa~dv~~v~~~l~~~~~~~~Ii-akIEt~~av~nldeI~~~sDgImIaRgDLg 263 (505)
+.|.+.+ +..++.|+|++.+ +...+...+..++.+ ++...++.|| --|-|.++.++|-+ .-+|+|-||=|-=+
T Consensus 107 ~~~~er~-~~L~~agvD~ivID~a~g~s~~~~~~ik~i-k~~~~~~~viaGNV~T~e~a~~L~~--aGad~vkVGiGpGs 182 (352)
T PF00478_consen 107 DDDFERA-EALVEAGVDVIVIDSAHGHSEHVIDMIKKI-KKKFPDVPVIAGNVVTYEGAKDLID--AGADAVKVGIGPGS 182 (352)
T ss_dssp TCHHHHH-HHHHHTT-SEEEEE-SSTTSHHHHHHHHHH-HHHSTTSEEEEEEE-SHHHHHHHHH--TT-SEEEESSSSST
T ss_pred HHHHHHH-HHHHHcCCCEEEccccCccHHHHHHHHHHH-HHhCCCceEEecccCCHHHHHHHHH--cCCCEEEEeccCCc
Confidence 3455565 6667889999888 687888777777654 4444466655 46999999877544 34899999755322
Q ss_pred CcCCch------hHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeee
Q 010627 264 MEIPIE------KIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 326 (505)
Q Consensus 264 ~e~~~~------~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imL 326 (505)
+-...+ .-..+-....++|+++++|+|-=..+= --.|++.|+..|+|++||
T Consensus 183 iCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~------------~sGDi~KAla~GAd~VMl 239 (352)
T PF00478_consen 183 ICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIR------------TSGDIVKALAAGADAVML 239 (352)
T ss_dssp TBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-S------------SHHHHHHHHHTT-SEEEE
T ss_pred ccccccccccCCcHHHHHHHHHHHhhhccCceeecCCcC------------cccceeeeeeecccceee
Confidence 221110 134555677888888999998432211 247999999999999999
No 48
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=94.77 E-value=0.085 Score=58.10 Aligned_cols=153 Identities=17% Similarity=0.180 Sum_probs=110.9
Q ss_pred CCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhcc-------C----CCceEEEEecCHHHHhcHHHHHhc
Q 010627 183 PTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGH-------A----KNILLMSKVENQEGVANFDDILAN 251 (505)
Q Consensus 183 ~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~-------~----~~~~IiakIEt~~av~nldeI~~~ 251 (505)
|.+.--....+.+.+.-.|-=.|.+|+|.+.+++++.++++... + ..++|=+++|-|..+-.+++++..
T Consensus 540 P~i~~~Q~RAmLrAs~g~g~L~imLPMVt~v~E~~~Ar~li~ra~~~v~~~~~~~~~~~~iG~MlEvPsll~~L~~L~~~ 619 (756)
T COG3605 540 PEIFRIQVRAMLRASAGTGNLRILLPMVTEVDEVDEARRLIERAVREVSEMGGYLPPKPRIGAMLEVPSLLFQLDELAKR 619 (756)
T ss_pred hhHHHHHHHHHHHhhCCCcCceeeeecccchHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcceeeehhHHHHhHHHHHhh
Confidence 43333333444244443444579999999999999999988532 2 346788999999999999999999
Q ss_pred CCeeEEecCcccC-----cCCc-----------hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHH
Q 010627 252 SDAFMVARGDLGM-----EIPI-----------EKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVAN 315 (505)
Q Consensus 252 sDgImIaRgDLg~-----e~~~-----------~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~n 315 (505)
.|-+=||-.||.- +=+- +.+..+-|+|.++|..+|+||-++.+|- ..|--| .-
T Consensus 620 vDFvSVGtNDL~QyllAvDR~N~RVad~yD~L~pa~LraLk~I~~a~~~~~~pVtlCGEMA------g~Pl~A-----~~ 688 (756)
T COG3605 620 VDFVSVGTNDLTQYLLAVDRNNTRVADRYDSLHPAFLRALKQIVRAAERHGTPVTLCGEMA------GDPLSA-----MA 688 (756)
T ss_pred CCEEEecchHHHHHHHHHhcCCchhhhhhcccCHHHHHHHHHHHHHHHhcCCCeeehhhhc------CChHHH-----HH
Confidence 9999999999852 2221 3566788999999999999999988865 245444 55
Q ss_pred HHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhc
Q 010627 316 AVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAES 352 (505)
Q Consensus 316 av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~ 352 (505)
.+..|++.+-.+ -|++|+ ||+|-+-+..++.
T Consensus 689 LigLGfrslSMn-~~~v~~-----VK~ml~~ld~~~~ 719 (756)
T COG3605 689 LIGLGFRSLSMN-PRSVGP-----VKYLLRHLDLAEA 719 (756)
T ss_pred HHhcCcCccccC-cccccc-----HHHHHHhccHHHH
Confidence 678899998775 466664 6677654444443
No 49
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=94.40 E-value=0.19 Score=58.92 Aligned_cols=92 Identities=18% Similarity=0.227 Sum_probs=79.6
Q ss_pred cCCCEEEEcCCCChhHHHHHHHHHhccC--------CCceEEEEecCHHHHhcHHHHHhc--C--------------Cee
Q 010627 200 NQIDMIALSFVRKGSDLVGVRKLLGGHA--------KNILLMSKVENQEGVANFDDILAN--S--------------DAF 255 (505)
Q Consensus 200 ~g~d~V~~sfV~sa~dv~~v~~~l~~~~--------~~~~IiakIEt~~av~nldeI~~~--s--------------DgI 255 (505)
..+..+++|+.++++||.++-.++++.| ..+.|+...||.+.++|.++|++. + --|
T Consensus 485 ~~i~~yIiSmt~~~sdvL~v~~l~k~~gl~~~~~~~~~l~VvPLFEti~dL~~a~~il~~l~~~p~yr~~l~~~~~~qeV 564 (911)
T PRK00009 485 EAIGAYIISMAETVSDVLEVLLLLKEAGLLDPAAARAPLPVVPLFETIEDLRNAADVMRQLLSLPWYRGLIAGRGNLQEV 564 (911)
T ss_pred hhhceEeecCCCCHHHHHHHHHHHHHcCCCccCCCCCCcCeECCcCCHHHHHhHHHHHHHHHcChHHHHHHhcCCCeEEE
Confidence 3667789999999999999998887654 257899999999999999999985 1 179
Q ss_pred EEecCcccCcCCc----hhHHHHHHHHHHHHHHcCCCeEE
Q 010627 256 MVARGDLGMEIPI----EKIFLAQKVMIYKCNIQGKPVVT 291 (505)
Q Consensus 256 mIaRgDLg~e~~~----~~v~~~qk~Ii~~~~~~gkpvi~ 291 (505)
|+|..|=+-+-|. -.+..+|+++.+.|+++|.++..
T Consensus 565 MlGySDS~Kd~G~las~w~l~~Aq~~L~~~~~~~gv~l~~ 604 (911)
T PRK00009 565 MLGYSDSNKDGGFLASNWALYRAQEALVELAEKHGVRLTL 604 (911)
T ss_pred EeecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 9999999999887 38889999999999999999854
No 50
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=93.83 E-value=0.65 Score=51.19 Aligned_cols=124 Identities=19% Similarity=0.263 Sum_probs=78.4
Q ss_pred hhcHHHHHhcccccCCCEEEEcCC--CChhHHHHHHHHHhccCCCceEEE-EecCHHHHhcHHHHHhcCCeeEEe--cCc
Q 010627 187 EKDKEDILKWGIPNQIDMIALSFV--RKGSDLVGVRKLLGGHAKNILLMS-KVENQEGVANFDDILANSDAFMVA--RGD 261 (505)
Q Consensus 187 e~D~~di~~~al~~g~d~V~~sfV--~sa~dv~~v~~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~sDgImIa--RgD 261 (505)
+.+.+.+ +..++.|+|.|.+..- .+...++.+++ +++...++.|+| -+-|++....+-+ +=+|+|.++ +|-
T Consensus 240 ~~~~~~~-~~l~~ag~d~i~id~a~G~s~~~~~~i~~-ik~~~~~~~v~aG~V~t~~~a~~~~~--aGad~I~vg~g~Gs 315 (495)
T PTZ00314 240 PEDIERA-AALIEAGVDVLVVDSSQGNSIYQIDMIKK-LKSNYPHVDIIAGNVVTADQAKNLID--AGADGLRIGMGSGS 315 (495)
T ss_pred HHHHHHH-HHHHHCCCCEEEEecCCCCchHHHHHHHH-HHhhCCCceEEECCcCCHHHHHHHHH--cCCCEEEECCcCCc
Confidence 4456666 7778999999997653 44433333333 222334678888 5777666654432 348999874 552
Q ss_pred cc-----CcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 262 LG-----MEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 262 Lg-----~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
-. ...+.+. ..+-..+.+.|++.|.|+|...-+. --.|++.|+..|||++|+.
T Consensus 316 ~~~t~~~~~~g~p~-~~ai~~~~~~~~~~~v~vIadGGi~------------~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 316 ICITQEVCAVGRPQ-ASAVYHVARYARERGVPCIADGGIK------------NSGDICKALALGADCVMLG 373 (495)
T ss_pred ccccchhccCCCCh-HHHHHHHHHHHhhcCCeEEecCCCC------------CHHHHHHHHHcCCCEEEEC
Confidence 11 1122222 2344567788999999998644433 2378899999999999994
No 51
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=93.50 E-value=2 Score=42.20 Aligned_cols=77 Identities=12% Similarity=0.086 Sum_probs=48.6
Q ss_pred ChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEE----EecCHH-HHhcHHHHHhc-CCeeEEec
Q 010627 186 TEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMS----KVENQE-GVANFDDILAN-SDAFMVAR 259 (505)
Q Consensus 186 te~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~Iia----kIEt~~-av~nldeI~~~-sDgImIaR 259 (505)
+........+.+.+.|+|||.++|..+.+.++++.+.+ .+++++ ++.|.+ .++|+.+.++. ++|+.++|
T Consensus 141 ~~~~i~~~~~~a~~~GaD~Ik~~~~~~~~~~~~i~~~~-----~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~ 215 (235)
T cd00958 141 DPDLIAYAARIGAELGADIVKTKYTGDAESFKEVVEGC-----PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGR 215 (235)
T ss_pred CHHHHHHHHHHHHHHCCCEEEecCCCCHHHHHHHHhcC-----CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEech
Confidence 33444441266888999999999876555555544422 233433 233332 57888888887 79999999
Q ss_pred CcccCcCC
Q 010627 260 GDLGMEIP 267 (505)
Q Consensus 260 gDLg~e~~ 267 (505)
.=+..+=|
T Consensus 216 ~i~~~~dp 223 (235)
T cd00958 216 NIFQRPDP 223 (235)
T ss_pred hhhcCCCH
Confidence 76655533
No 52
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=93.36 E-value=0.79 Score=50.66 Aligned_cols=125 Identities=18% Similarity=0.189 Sum_probs=77.3
Q ss_pred ChhcHHHHHhcccccCCCEEEEcCC--CChhHHHHHHHHHhccCCCceEEEE-ecCHHHHhcHHHHHhcCCeeEEe--cC
Q 010627 186 TEKDKEDILKWGIPNQIDMIALSFV--RKGSDLVGVRKLLGGHAKNILLMSK-VENQEGVANFDDILANSDAFMVA--RG 260 (505)
Q Consensus 186 te~D~~di~~~al~~g~d~V~~sfV--~sa~dv~~v~~~l~~~~~~~~Iiak-IEt~~av~nldeI~~~sDgImIa--Rg 260 (505)
.+.+.+-+ +..+++|+|.|++--- .+...+.. -+.+++...+..||++ |-|++.-.++.+ .-+|+|.++ +|
T Consensus 246 ~~~~~~r~-~~l~~ag~d~i~iD~~~g~~~~~~~~-i~~ik~~~p~~~vi~g~v~t~e~a~~a~~--aGaD~i~vg~g~G 321 (505)
T PLN02274 246 RESDKERL-EHLVKAGVDVVVLDSSQGDSIYQLEM-IKYIKKTYPELDVIGGNVVTMYQAQNLIQ--AGVDGLRVGMGSG 321 (505)
T ss_pred CccHHHHH-HHHHHcCCCEEEEeCCCCCcHHHHHH-HHHHHHhCCCCcEEEecCCCHHHHHHHHH--cCcCEEEECCCCC
Confidence 34555666 6778899999987543 22222222 2233333346788775 999888766655 458999985 44
Q ss_pred cccCc-----CCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 261 DLGME-----IPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 261 DLg~e-----~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
--+.. .+.+. ...-..+.+.+++.++|||...-+- --.|+..|+..|||++|+.
T Consensus 322 ~~~~t~~~~~~g~~~-~~~i~~~~~~~~~~~vpVIadGGI~------------~~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 322 SICTTQEVCAVGRGQ-ATAVYKVASIAAQHGVPVIADGGIS------------NSGHIVKALTLGASTVMMG 380 (505)
T ss_pred ccccCccccccCCCc-ccHHHHHHHHHHhcCCeEEEeCCCC------------CHHHHHHHHHcCCCEEEEc
Confidence 11111 11111 1223335566777899999766543 2378999999999999994
No 53
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=93.27 E-value=6.3 Score=39.83 Aligned_cols=195 Identities=15% Similarity=0.101 Sum_probs=117.0
Q ss_pred CcccCCccccCCCCChhcHHHHHhcccccCCCEEEEcCCCChhH----------HHHHHHHHhccCCCceEEEEecCHHH
Q 010627 172 NVNLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSD----------LVGVRKLLGGHAKNILLMSKVENQEG 241 (505)
Q Consensus 172 gvnlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~d----------v~~v~~~l~~~~~~~~IiakIEt~~a 241 (505)
|-..|+.. ++..++..|.+..-+.|+|+|=+.|..+.++ .+.++++......+.++.+..-....
T Consensus 9 G~q~~~~~-----f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 83 (266)
T cd07944 9 GGYVNNWD-----FGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGND 83 (266)
T ss_pred CccccCcc-----CCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCC
Confidence 33556654 4888888886666678999998887655321 34445444332236778887765432
Q ss_pred HhcHHHHHhc----CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHH-H
Q 010627 242 VANFDDILAN----SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVAN-A 316 (505)
Q Consensus 242 v~nldeI~~~----sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~n-a 316 (505)
+++.|... .|.|-++ ++...+. ..+..++.++++|..|.+. + .....-+..++.+++. +
T Consensus 84 --~~~~l~~a~~~gv~~iri~-------~~~~~~~-~~~~~i~~ak~~G~~v~~~--~----~~a~~~~~~~~~~~~~~~ 147 (266)
T cd07944 84 --DIDLLEPASGSVVDMIRVA-------FHKHEFD-EALPLIKAIKEKGYEVFFN--L----MAISGYSDEELLELLELV 147 (266)
T ss_pred --CHHHHHHHhcCCcCEEEEe-------cccccHH-HHHHHHHHHHHCCCeEEEE--E----EeecCCCHHHHHHHHHHH
Confidence 23344332 3666664 2333433 3467788899999887653 2 2223456777777775 4
Q ss_pred HHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCchhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcCCcEEEEE
Q 010627 317 VLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDYGDVFKRVMQHSPVPMSPLESLASSAVRTANSARATLILVL 396 (505)
Q Consensus 317 v~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~ 396 (505)
...|+|.+.| .+|.=..+|.++-+.+..+..+..+.....-|+ ++ .--+|.+-...|.+.+++ +|=-
T Consensus 148 ~~~g~~~i~l-~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~----------Hn-~~Gla~AN~laA~~aGa~-~vd~ 214 (266)
T cd07944 148 NEIKPDVFYI-VDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHA----------HN-NLQLALANTLEAIELGVE-IIDA 214 (266)
T ss_pred HhCCCCEEEE-ecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEe----------CC-CccHHHHHHHHHHHcCCC-EEEE
Confidence 5569999999 689888999998888888765443211111111 11 112455555566778887 4444
Q ss_pred cCCc
Q 010627 397 TRGG 400 (505)
Q Consensus 397 T~sG 400 (505)
|-.|
T Consensus 215 s~~G 218 (266)
T cd07944 215 TVYG 218 (266)
T ss_pred eccc
Confidence 4444
No 54
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=93.09 E-value=1.3 Score=48.14 Aligned_cols=125 Identities=20% Similarity=0.253 Sum_probs=79.4
Q ss_pred ChhcHHHHHhcccccCCCEEEEcCC--CChhHHHHHHHHHhccCCCceEEE-EecCHHHHhcHHHHHhcCCeeEEe--cC
Q 010627 186 TEKDKEDILKWGIPNQIDMIALSFV--RKGSDLVGVRKLLGGHAKNILLMS-KVENQEGVANFDDILANSDAFMVA--RG 260 (505)
Q Consensus 186 te~D~~di~~~al~~g~d~V~~sfV--~sa~dv~~v~~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~sDgImIa--Rg 260 (505)
.+.+.+.. +..++.|+|+|.+-.. .+.. +.+.-+.+++.-.+..|++ -+-|+++..++-+ .-+|+|-|+ +|
T Consensus 222 ~~~~~~r~-~~L~~aG~d~I~vd~a~g~~~~-~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~--aGad~i~vg~g~G 297 (450)
T TIGR01302 222 REFDKERA-EALVKAGVDVIVIDSSHGHSIY-VIDSIKEIKKTYPDLDIIAGNVATAEQAKALID--AGADGLRVGIGPG 297 (450)
T ss_pred chhHHHHH-HHHHHhCCCEEEEECCCCcHhH-HHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHH--hCCCEEEECCCCC
Confidence 45556666 6678899999987653 2222 3332233333334677777 6888887766654 347999865 55
Q ss_pred cccCc-----CCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 261 DLGME-----IPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 261 DLg~e-----~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
--... .+.+. ..+...+.+.|++.+.|+|...-+- --.|++.|+..|+|++|+.
T Consensus 298 ~~~~t~~~~~~g~p~-~~~i~~~~~~~~~~~vpviadGGi~------------~~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 298 SICTTRIVAGVGVPQ-ITAVYDVAEYAAQSGIPVIADGGIR------------YSGDIVKALAAGADAVMLG 356 (450)
T ss_pred cCCccceecCCCccH-HHHHHHHHHHHhhcCCeEEEeCCCC------------CHHHHHHHHHcCCCEEEEC
Confidence 21111 22222 2445667788888999988644433 2368899999999999994
No 55
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=93.03 E-value=1.2 Score=45.92 Aligned_cols=114 Identities=13% Similarity=0.178 Sum_probs=69.6
Q ss_pred HHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc-CCeeEEecCcccCcCCc
Q 010627 190 KEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN-SDAFMVARGDLGMEIPI 268 (505)
Q Consensus 190 ~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-sDgImIaRgDLg~e~~~ 268 (505)
.+.+ +.+++.+++.|.++|-...+.++++++ . .+++++.+-+.+-. ....+. +|+|.+--.+-|-..+.
T Consensus 77 ~~~~-~~~~~~~v~~v~~~~g~p~~~i~~lk~----~--g~~v~~~v~s~~~a---~~a~~~GaD~Ivv~g~eagGh~g~ 146 (307)
T TIGR03151 77 DELV-DLVIEEKVPVVTTGAGNPGKYIPRLKE----N--GVKVIPVVASVALA---KRMEKAGADAVIAEGMESGGHIGE 146 (307)
T ss_pred HHHH-HHHHhCCCCEEEEcCCCcHHHHHHHHH----c--CCEEEEEcCCHHHH---HHHHHcCCCEEEEECcccCCCCCC
Confidence 3445 667899999999988655444454443 3 36888888765433 222233 79998822233333322
Q ss_pred hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecc
Q 010627 269 EKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG 328 (505)
Q Consensus 269 ~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~ 328 (505)
.....+.+++. ...++|+|.+.-+- .-.|++.++..|+|++++..
T Consensus 147 ~~~~~ll~~v~---~~~~iPviaaGGI~------------~~~~~~~al~~GA~gV~iGt 191 (307)
T TIGR03151 147 LTTMALVPQVV---DAVSIPVIAAGGIA------------DGRGMAAAFALGAEAVQMGT 191 (307)
T ss_pred CcHHHHHHHHH---HHhCCCEEEECCCC------------CHHHHHHHHHcCCCEeecch
Confidence 11222223333 33479999887654 24567888889999999953
No 56
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=93.00 E-value=2.3 Score=42.32 Aligned_cols=113 Identities=12% Similarity=0.097 Sum_probs=76.2
Q ss_pred hcccccCCCEEEEcC--CCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEE---ecCcccCcCCch
Q 010627 195 KWGIPNQIDMIALSF--VRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMV---ARGDLGMEIPIE 269 (505)
Q Consensus 195 ~~al~~g~d~V~~sf--V~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImI---aRgDLg~e~~~~ 269 (505)
+.+.+.|+|+|.++- +++.++..++.+.+++.|-+..+...=+|+ .+.+..+++.+|++++ -+|. |..
T Consensus 95 ~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~--~e~l~~~~~~~~~~l~msv~~~~-g~~---- 167 (244)
T PRK13125 95 NMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFP--DLLIHRLSKLSPLFIYYGLRPAT-GVP---- 167 (244)
T ss_pred HHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCC--HHHHHHHHHhCCCEEEEEeCCCC-CCC----
Confidence 777889999999985 566788999999999888777777766663 5778999999998874 3334 222
Q ss_pred hHHHHHHHHHHHHHHc--CCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 270 KIFLAQKVMIYKCNIQ--GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 270 ~v~~~qk~Ii~~~~~~--gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
++.-....++..++. .+|+.+- ...-|.. ++..+...|+|+++..
T Consensus 168 -~~~~~~~~i~~lr~~~~~~~i~v~---------gGI~~~e---~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 168 -LPVSVERNIKRVRNLVGNKYLVVG---------FGLDSPE---DARDALSAGADGVVVG 214 (244)
T ss_pred -chHHHHHHHHHHHHhcCCCCEEEe---------CCcCCHH---HHHHHHHcCCCEEEEC
Confidence 233333344444443 3676542 2222333 5566667899998874
No 57
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=92.70 E-value=8.2 Score=38.13 Aligned_cols=195 Identities=18% Similarity=0.081 Sum_probs=118.8
Q ss_pred CCChhcHHHHHhcccccCCCEEEEcCCCCh------hHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc-CCeeE
Q 010627 184 TLTEKDKEDILKWGIPNQIDMIALSFVRKG------SDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN-SDAFM 256 (505)
Q Consensus 184 ~lte~D~~di~~~al~~g~d~V~~sfV~sa------~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-sDgIm 256 (505)
.++..+...+.+...+.|+++|=+.+-.+. ++..++-+.+.+.+.+..+.+..=+ +.+.++...+. .|.|.
T Consensus 15 ~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~--~~~~i~~a~~~g~~~i~ 92 (265)
T cd03174 15 TFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRN--REKGIERALEAGVDEVR 92 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccC--chhhHHHHHhCCcCEEE
Confidence 346666666547777889999999988877 6666666666666655666666644 23344444444 36665
Q ss_pred EecCcccCc--------CCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHH-HHHcCCceeeec
Q 010627 257 VARGDLGME--------IPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLS 327 (505)
Q Consensus 257 IaRgDLg~e--------~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~n-av~~G~D~imLs 327 (505)
+.= +. .+ .+.+....--...++.++++|.++.+.+... ..+.-+..++.+++. +...|+|.+.|
T Consensus 93 i~~-~~-s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~----~~~~~~~~~l~~~~~~~~~~g~~~i~l- 165 (265)
T cd03174 93 IFD-SA-SETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDA----FGCKTDPEYVLEVAKALEEAGADEISL- 165 (265)
T ss_pred EEE-ec-CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEee----cCCCCCHHHHHHHHHHHHHcCCCEEEe-
Confidence 531 11 11 2233355556788889999999987765321 111245667776666 66789999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHhcccCchhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcCCcEEEEEcCCc
Q 010627 328 GETAAGAYPEVAVRTMAQICVEAESTLDYGDVFKRVMQHSPVPMSPLESLASSAVRTANSARATLILVLTRGG 400 (505)
Q Consensus 328 ~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG 400 (505)
.+|.=.-.|.+.-+.++.+...... ....-|++ + .-.+|.+-...|...+|+ +|=-|-.|
T Consensus 166 ~Dt~G~~~P~~v~~li~~l~~~~~~-~~~~~H~H----------n-~~gla~an~laA~~aG~~-~id~s~~G 225 (265)
T cd03174 166 KDTVGLATPEEVAELVKALREALPD-VPLGLHTH----------N-TLGLAVANSLAALEAGAD-RVDGSVNG 225 (265)
T ss_pred chhcCCcCHHHHHHHHHHHHHhCCC-CeEEEEeC----------C-CCChHHHHHHHHHHcCCC-EEEecccc
Confidence 4776678898888887777654432 11111111 1 112455556667778887 34455444
No 58
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=92.68 E-value=12 Score=37.54 Aligned_cols=192 Identities=15% Similarity=0.147 Sum_probs=112.6
Q ss_pred CCChhcHHHHHhcccccCCCEEEEcCCCCh-hHHHHHHHHHhccCCCceEEEEe-cCHHHHhcHHHHHhc-CCeeEEe--
Q 010627 184 TLTEKDKEDILKWGIPNQIDMIALSFVRKG-SDLVGVRKLLGGHAKNILLMSKV-ENQEGVANFDDILAN-SDAFMVA-- 258 (505)
Q Consensus 184 ~lte~D~~di~~~al~~g~d~V~~sfV~sa-~dv~~v~~~l~~~~~~~~IiakI-Et~~av~nldeI~~~-sDgImIa-- 258 (505)
.+|..++..+.+...+.|++.|=+.|-... .+.+.++.+. +.+.+..+.+-. -+.++++ ...+. .|.|-+.
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~-~~~~~~~~~~~~r~~~~~v~---~a~~~g~~~i~i~~~ 91 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVGIPAMGEEEREAIRAIV-ALGLPARLIVWCRAVKEDIE---AALRCGVTAVHISIP 91 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHH-hcCCCCEEEEeccCCHHHHH---HHHhCCcCEEEEEEe
Confidence 457777777767777899999877554333 3334454443 333455665554 3444443 33332 3654442
Q ss_pred cCcc----cCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHH-HHcCCceeeecccCCCC
Q 010627 259 RGDL----GMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANA-VLDGTDCVMLSGETAAG 333 (505)
Q Consensus 259 RgDL----g~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~na-v~~G~D~imLs~Eta~G 333 (505)
-.|. -.....++.....+..++.|+++|..+.+.. ...++-+..++.+++.. ...|+|.|.| .+|.=.
T Consensus 92 ~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~------~~~~~~~~~~~~~~~~~~~~~G~~~i~l-~DT~G~ 164 (259)
T cd07939 92 VSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA------EDASRADPDFLIEFAEVAQEAGADRLRF-ADTVGI 164 (259)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee------ccCCCCCHHHHHHHHHHHHHCCCCEEEe-CCCCCC
Confidence 2221 0112234445556789999999999876532 23445667788777765 4679999999 688888
Q ss_pred CCHHHHHHHHHHHHHHHhcccCchhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcCCcEEEEEcCCc
Q 010627 334 AYPEVAVRTMAQICVEAESTLDYGDVFKRVMQHSPVPMSPLESLASSAVRTANSARATLILVLTRGG 400 (505)
Q Consensus 334 ~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG 400 (505)
-+|.++-+.+..+.+...-.+.+ |++. + --+|.+-...|.+.+++ +|=-|-.|
T Consensus 165 ~~P~~v~~lv~~l~~~~~~~l~~--H~Hn---------~--~Gla~An~laAi~aG~~-~vd~s~~G 217 (259)
T cd07939 165 LDPFTTYELIRRLRAATDLPLEF--HAHN---------D--LGLATANTLAAVRAGAT-HVSVTVNG 217 (259)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEE--EecC---------C--CChHHHHHHHHHHhCCC-EEEEeccc
Confidence 99999888887776543211111 1110 1 12344555566678887 45555544
No 59
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=92.52 E-value=0.51 Score=55.91 Aligned_cols=89 Identities=18% Similarity=0.169 Sum_probs=76.6
Q ss_pred CEEEEcCCCChhHHHHHHHHHhccC-----CCceEEEEecCHHHHhcHHHHHhc--C---------------CeeEEecC
Q 010627 203 DMIALSFVRKGSDLVGVRKLLGGHA-----KNILLMSKVENQEGVANFDDILAN--S---------------DAFMVARG 260 (505)
Q Consensus 203 d~V~~sfV~sa~dv~~v~~~l~~~~-----~~~~IiakIEt~~av~nldeI~~~--s---------------DgImIaRg 260 (505)
...++|+.++++||.++..+.++.| ..+.|+...||.++++|.++|++. + --||+|..
T Consensus 547 g~yIISmt~~~sdiL~V~~l~k~~g~~~~~~~l~VvPLFETi~dL~~a~~il~~ll~~p~Yr~~l~~~~~~~qeVMlGYS 626 (974)
T PTZ00398 547 GAYIISMCRNPSDILLVHVFQKEILKSGASKRQRVVPLLETIESLNSSSKTLEELFSNPWYLKHLKTVDNGIQEIMIGYS 626 (974)
T ss_pred ceeeeCCCCCHHHHHHHHHHHHHhCCcCCCCCcCeeCCcCCHHHHHhHHHHHHHHHcCHHHHHHHhhccCCeEEEEEecc
Confidence 3577999999999999988877643 247899999999999999999974 1 17999999
Q ss_pred cccCcCCc----hhHHHHHHHHHHHHHHcCCCeEE
Q 010627 261 DLGMEIPI----EKIFLAQKVMIYKCNIQGKPVVT 291 (505)
Q Consensus 261 DLg~e~~~----~~v~~~qk~Ii~~~~~~gkpvi~ 291 (505)
|=+.+-|. -.+..+|.++.+.|+++|..+..
T Consensus 627 DS~Kd~G~laa~w~l~~Aq~~L~~~~~~~gV~l~~ 661 (974)
T PTZ00398 627 DSGKDGGRLTSAWELYKAQERLSNIARQYGVEIRF 661 (974)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 99999887 38889999999999999999854
No 60
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=92.48 E-value=1.9 Score=45.16 Aligned_cols=126 Identities=19% Similarity=0.097 Sum_probs=79.0
Q ss_pred ChhcHHHHHhccccc--CCCEEEE--cCCCChhHHHHHHHHHhccCCCceEEEE-ecCHHHHhcHHHHHhcCCeeEEecC
Q 010627 186 TEKDKEDILKWGIPN--QIDMIAL--SFVRKGSDLVGVRKLLGGHAKNILLMSK-VENQEGVANFDDILANSDAFMVARG 260 (505)
Q Consensus 186 te~D~~di~~~al~~--g~d~V~~--sfV~sa~dv~~v~~~l~~~~~~~~Iiak-IEt~~av~nldeI~~~sDgImIaRg 260 (505)
++.|.+-+ +..+++ ++|+|.+ ++=.|...++.++ ++++.-.+..||+= |-|+++.+++-+ +-+|+|.|+=|
T Consensus 105 ~~~d~er~-~~L~~a~~~~d~iviD~AhGhs~~~i~~ik-~ir~~~p~~~viaGNV~T~e~a~~Li~--aGAD~ikVgiG 180 (343)
T TIGR01305 105 SDNDLEKM-TSILEAVPQLKFICLDVANGYSEHFVEFVK-LVREAFPEHTIMAGNVVTGEMVEELIL--SGADIVKVGIG 180 (343)
T ss_pred CHHHHHHH-HHHHhcCCCCCEEEEECCCCcHHHHHHHHH-HHHhhCCCCeEEEecccCHHHHHHHHH--cCCCEEEEccc
Confidence 55666666 656666 5998875 3333444444443 34444456788888 999999875543 45899998633
Q ss_pred cccCcCCc--hh----HHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 261 DLGMEIPI--EK----IFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 261 DLg~e~~~--~~----v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
-=++..+. .. -..+-..+.++++..++|+|.=.-+ . --.||+.|+..|+|++|+.
T Consensus 181 pGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGI---------r---~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 181 PGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGC---------T---CPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred CCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCc---------C---chhHHHHHHHcCCCEEEEC
Confidence 22222221 11 2233345666666678888853221 1 2389999999999999995
No 61
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=92.32 E-value=0.63 Score=53.78 Aligned_cols=112 Identities=23% Similarity=0.180 Sum_probs=89.0
Q ss_pred EEEEcCCCChhHHHHHHHHHh---ccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCc------------CCc
Q 010627 204 MIALSFVRKGSDLVGVRKLLG---GHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGME------------IPI 268 (505)
Q Consensus 204 ~V~~sfV~sa~dv~~v~~~l~---~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e------------~~~ 268 (505)
.+++||+++..+...+. ... ..+++.++..+||.|.++-..+||++..|++=+|-+||..- ...
T Consensus 597 ~~mip~~~~~~e~~~~~-~~~~~~~~~~~~~~~~m~e~P~~~~~~~e~~~~~d~~S~gtndltq~tlg~~rd~~~~~~~~ 675 (740)
T COG0574 597 EIMIPFVRTEEEREKVI-ILEEGLKRGKNYKVGQMIELPSAALLADEIAEYFDGFSIGSNDLTQLTLGLDRDSELFDERD 675 (740)
T ss_pred EEEccccccHHHHHHHH-HHhhhhcccceEEEEEEeecchHHhhhHhHHhhcccceecccccccceeeeecccccccccc
Confidence 58889999999998888 433 11233889999999999999999999999999999998632 223
Q ss_pred hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 269 EKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 269 ~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
+.+-.+.+..+..|+.+++.+.+++|.-+- |.-| ..++..|.|+|..+
T Consensus 676 ~~v~~li~~a~~~~~~~~~~~~icG~~~~~------p~~a-----~~~~e~Gi~~Vs~n 723 (740)
T COG0574 676 PAVLKLIIIAIKAADSGGLLVGICGQAPSD------PHGA-----IFLVELGIDSVSLN 723 (740)
T ss_pred ccHHHHHHHHHhcccccCcEEEEeccCCCC------cHHH-----HHHHHcCCCeEecC
Confidence 477788899999999999999998884321 3333 55889999999965
No 62
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=92.24 E-value=1.1 Score=46.87 Aligned_cols=130 Identities=19% Similarity=0.301 Sum_probs=87.4
Q ss_pred HHHHHhcccccCCCEEEEcCCCChhHHHHHHHH-------------------------HhccCCCceEEEEecCHHHHhc
Q 010627 190 KEDILKWGIPNQIDMIALSFVRKGSDLVGVRKL-------------------------LGGHAKNILLMSKVENQEGVAN 244 (505)
Q Consensus 190 ~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~-------------------------l~~~~~~~~IiakIEt~~av~n 244 (505)
++.+ ..|++.|+|+|+++- +++..++++ +...+.++.....|.+++.++.
T Consensus 15 k~~v-t~AlEsGvd~vv~~~----~~~~~~~~lg~~~vi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~i~~~~~~~~ 89 (354)
T PF01959_consen 15 KEVV-TAALESGVDGVVVDD----EDVEKVRELGRIKVIAFDSDGEGDGTDDLPDLKALKAEGKEVGVYVEITDKEDEEE 89 (354)
T ss_pred HHHH-HHHHHcCCCEEEECH----hHhhhhhccceEEEEeccccccCCccccchhhhhhhccCceEEEEEEECCHHHHHH
Confidence 5566 899999999999884 334443332 1122445567889999999999
Q ss_pred HHHHHhcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCcee
Q 010627 245 FDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCV 324 (505)
Q Consensus 245 ldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~i 324 (505)
+-+.....|.+++--.|-. -+|+|.+ +.+....+.-++.. ..+-.|..=...+...|+|++
T Consensus 90 a~~~~~~~~~~iv~~~Dw~-iIPlEnl-------iA~~~~~~~~i~a~-----------v~~~~eA~~~~~~LE~G~dGV 150 (354)
T PF01959_consen 90 ACELAKRADYVIVEFRDWT-IIPLENL-------IAALQGSSTKIIAV-----------VADAEEARVALEVLEKGVDGV 150 (354)
T ss_pred HHHHhccCCeEEEEcCCCc-EecHHHH-------HHHhcCCCceEEEE-----------eCCHHHHHHHHHHHhcCCCeE
Confidence 9998888888888766665 3777764 33332233333321 355677777789999999999
Q ss_pred eecccCCCCCCHHHHHHHHHHHHHH
Q 010627 325 MLSGETAAGAYPEVAVRTMAQICVE 349 (505)
Q Consensus 325 mLs~Eta~G~yP~~~V~~m~~i~~~ 349 (505)
+|..+. | ..++.+...+.+
T Consensus 151 ll~~~d-----~-~ei~~~~~~~~~ 169 (354)
T PF01959_consen 151 LLDPDD-----P-AEIKALVALLKE 169 (354)
T ss_pred EECCCC-----H-HHHHHHHHHHhh
Confidence 998663 3 445555555555
No 63
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.96 E-value=1.9 Score=46.36 Aligned_cols=124 Identities=15% Similarity=0.238 Sum_probs=75.8
Q ss_pred hhcHHHHHhcccccCCCEEE--EcCCCChhHHHHHHHHHhccCCCceEEE-EecCHHHHhcHHHHHhcCCeeEEecCccc
Q 010627 187 EKDKEDILKWGIPNQIDMIA--LSFVRKGSDLVGVRKLLGGHAKNILLMS-KVENQEGVANFDDILANSDAFMVARGDLG 263 (505)
Q Consensus 187 e~D~~di~~~al~~g~d~V~--~sfV~sa~dv~~v~~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~sDgImIaRgDLg 263 (505)
+.+.+.+ +..++.|+|+|+ .+.=. .+.+.+.-+.+++.-.+..+++ -|-|.+...++.+. -+|+|.+|=|-=+
T Consensus 152 ~~~~~~v-~~lv~aGvDvI~iD~a~g~-~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a--GaD~I~vG~g~Gs 227 (404)
T PRK06843 152 IDTIERV-EELVKAHVDILVIDSAHGH-STRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV--GADCLKVGIGPGS 227 (404)
T ss_pred HHHHHHH-HHHHhcCCCEEEEECCCCC-ChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc--CCCEEEECCCCCc
Confidence 3455566 667889999999 44422 2344444444555444555655 78888887766552 4899998633211
Q ss_pred C-------cCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 264 M-------EIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 264 ~-------e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
. ..+.+.+ .+...+.+.+++.+.|+|...-+- .-.|++.|+..|+|++|+.
T Consensus 228 ~c~tr~~~g~g~p~l-tai~~v~~~~~~~~vpVIAdGGI~------------~~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 228 ICTTRIVAGVGVPQI-TAICDVYEVCKNTNICIIADGGIR------------FSGDVVKAIAAGADSVMIG 285 (404)
T ss_pred CCcceeecCCCCChH-HHHHHHHHHHhhcCCeEEEeCCCC------------CHHHHHHHHHcCCCEEEEc
Confidence 1 1121111 122334456667799998654432 2368899999999999993
No 64
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=91.84 E-value=2.4 Score=41.38 Aligned_cols=113 Identities=15% Similarity=0.213 Sum_probs=65.9
Q ss_pred HHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc-CCeeEEecCcccCcCCch
Q 010627 191 EDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN-SDAFMVARGDLGMEIPIE 269 (505)
Q Consensus 191 ~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-sDgImIaRgDLg~e~~~~ 269 (505)
+.+ +.+.+.|+|+|.++.-.+.+.++.+++ ..+.++.++.+.+ .+.++.+. +|+|.+....-+-.....
T Consensus 71 ~~~-~~~~~~g~d~v~l~~~~~~~~~~~~~~------~~i~~i~~v~~~~---~~~~~~~~gad~i~~~~~~~~G~~~~~ 140 (236)
T cd04730 71 ALL-EVALEEGVPVVSFSFGPPAEVVERLKA------AGIKVIPTVTSVE---EARKAEAAGADALVAQGAEAGGHRGTF 140 (236)
T ss_pred HHH-HHHHhCCCCEEEEcCCCCHHHHHHHHH------cCCEEEEeCCCHH---HHHHHHHcCCCEEEEeCcCCCCCCCcc
Confidence 455 677889999999998766554544443 2467888887653 33444433 688877322211111110
Q ss_pred hHHHHHHHHHHHHHH-cCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 270 KIFLAQKVMIYKCNI-QGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 270 ~v~~~qk~Ii~~~~~-~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
. ......++.+++ .++|++.+.-+ - ...|+..++..|+|+++++
T Consensus 141 ~--~~~~~~i~~i~~~~~~Pvi~~GGI---------~---~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 141 D--IGTFALVPEVRDAVDIPVIAAGGI---------A---DGRGIAAALALGADGVQMG 185 (236)
T ss_pred c--cCHHHHHHHHHHHhCCCEEEECCC---------C---CHHHHHHHHHcCCcEEEEc
Confidence 0 011233333333 37899876542 1 1356777788999999995
No 65
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=91.83 E-value=3.3 Score=43.34 Aligned_cols=132 Identities=22% Similarity=0.297 Sum_probs=90.0
Q ss_pred hhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHh----------------ccCCCceEEEEecCHHHHhcHHHHHh
Q 010627 187 EKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLG----------------GHAKNILLMSKVENQEGVANFDDILA 250 (505)
Q Consensus 187 e~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~----------------~~~~~~~IiakIEt~~av~nldeI~~ 250 (505)
+.+++.+ ..|++.|+|+|.++- +++..++++-+ ..+.+...+.+|.+++..+.+.+...
T Consensus 13 ~~~k~~v-t~AlEsGv~~vvv~~----~~~~~v~~lg~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~e~~a~~~~~ 87 (344)
T PRK02290 13 EERKEVV-TTALESGVDGVVVDE----EDVERVRELGRIKVAADDPDADAVVISGSAGEDGAYVEIRDKEDEEFAAELAK 87 (344)
T ss_pred hhHHHHH-HHHHHcCCCEEEECH----HHhHHHHhhCCeeEEEEcCCcchhhhcccCCceEEEEEECCHHHHHHHHHhhc
Confidence 6677777 999999999998874 66666655321 12345678889999999999999998
Q ss_pred cCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccC
Q 010627 251 NSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGET 330 (505)
Q Consensus 251 ~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Et 330 (505)
..|.++|--.|-. -+|+|. +|.+..+.++ ++ |. .-+-.|..-.......|+|+++|..+.
T Consensus 88 ~~~~viv~~~dW~-iIPlEn-------lIA~~~~~~~-l~-a~----------v~~~~eA~~a~~~LE~G~dGVvl~~~d 147 (344)
T PRK02290 88 EVDYVIVEGRDWT-IIPLEN-------LIADLGQSGK-II-AG----------VADAEEAKLALEILEKGVDGVLLDPDD 147 (344)
T ss_pred cCCEEEEECCCCc-EecHHH-------HHhhhcCCce-EE-EE----------eCCHHHHHHHHHHhccCCCeEEECCCC
Confidence 8898888655543 367766 3444433333 32 21 344567777789999999999997663
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 010627 331 AAGAYPEVAVRTMAQICVE 349 (505)
Q Consensus 331 a~G~yP~~~V~~m~~i~~~ 349 (505)
| ..++-+...+.+
T Consensus 148 -----~-~ei~~~~~~~~~ 160 (344)
T PRK02290 148 -----P-NEIKAIVALIEE 160 (344)
T ss_pred -----H-HHHHHHHHHHhc
Confidence 3 344555555544
No 66
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=91.81 E-value=4.6 Score=40.49 Aligned_cols=67 Identities=13% Similarity=0.256 Sum_probs=43.6
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEec--C-HHHHhcHHHHHhc-CCeeEEecCcccC
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVE--N-QEGVANFDDILAN-SDAFMVARGDLGM 264 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIE--t-~~av~nldeI~~~-sDgImIaRgDLg~ 264 (505)
+.+.+.|+|||..||.. +++.++++.....-.+..+.-|= + .++++|+.++++. ++|+.++|.=+..
T Consensus 163 ~~a~~~GADyikt~~~~---~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~ 233 (258)
T TIGR01949 163 RLGAELGADIVKTPYTG---DIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQH 233 (258)
T ss_pred HHHHHHCCCEEeccCCC---CHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcC
Confidence 55678899999999864 44555554432222333333342 2 4568899999887 7899998865543
No 67
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.72 E-value=1.7 Score=47.72 Aligned_cols=127 Identities=15% Similarity=0.179 Sum_probs=83.1
Q ss_pred CChhcHHHHHhcccccCCCEEEEc--CCCChhHHHHHHHHHhccCCCceEEE-EecCHHHHhcHHHHHhcCCeeEEecCc
Q 010627 185 LTEKDKEDILKWGIPNQIDMIALS--FVRKGSDLVGVRKLLGGHAKNILLMS-KVENQEGVANFDDILANSDAFMVARGD 261 (505)
Q Consensus 185 lte~D~~di~~~al~~g~d~V~~s--fV~sa~dv~~v~~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~sDgImIaRgD 261 (505)
+++.+.+.+ +..++.|+|.|++- +=.+ ..+.+.-+.+++...+..||| -|-|.++..++.+ +-+|+|-||=|-
T Consensus 224 ~~~~~~~~a-~~Lv~aGvd~i~~D~a~~~~-~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~--aGad~v~vgig~ 299 (479)
T PRK07807 224 INGDVAAKA-RALLEAGVDVLVVDTAHGHQ-EKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVE--AGADIVKVGVGP 299 (479)
T ss_pred cChhHHHHH-HHHHHhCCCEEEEeccCCcc-HHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHH--cCCCEEEECccC
Confidence 355566666 77788999998764 2222 334444445555556789999 9999999987766 358998864332
Q ss_pred --ccCcCCch----hHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 262 --LGMEIPIE----KIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 262 --Lg~e~~~~----~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
...--... .-..+-.++.++|++.|+|||-...+ .+. .|+..|+..|+|++|+.
T Consensus 300 gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi---------~~~---~~~~~al~~ga~~v~~g 359 (479)
T PRK07807 300 GAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGV---------RHP---RDVALALAAGASNVMIG 359 (479)
T ss_pred CcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCC---------CCH---HHHHHHHHcCCCeeecc
Confidence 21111111 12234466777777889999965442 222 68899999999999983
No 68
>PRK08227 autoinducer 2 aldolase; Validated
Probab=91.63 E-value=5 Score=40.69 Aligned_cols=157 Identities=19% Similarity=0.158 Sum_probs=87.4
Q ss_pred ecCHHHHhcHHHHHhcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHH
Q 010627 236 VENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVAN 315 (505)
Q Consensus 236 IEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~n 315 (505)
+|+.... +..++.-+|+++.-+|=+....+ ...++|.|+-..-=.++. .+.+...-+++|-.
T Consensus 41 l~~~~~~--~~~i~~~~da~~~~~G~~~~~~~---------------~~~~~~lil~ls~~t~~~-~~~~~~~l~~sVee 102 (264)
T PRK08227 41 LERIDIN--IAPLFPYADVLMCTRGILRSVVP---------------PATNKPVVLRASGGNSIL-KELSNEAVAVDMED 102 (264)
T ss_pred ccChHHH--HHHHhhcCCEEEeChhHHHhccc---------------ccCCCcEEEEEcCCCCCC-CCCCcccceecHHH
Confidence 3444333 56666567999887654432111 123577665422111111 12244556688999
Q ss_pred HHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcc-cCchhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcCCcEEE
Q 010627 316 AVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAEST-LDYGDVFKRVMQHSPVPMSPLESLASSAVRTANSARATLIL 394 (505)
Q Consensus 316 av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~-~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Iv 394 (505)
|+..|+|||..+-=-- +.+=-+.++.+.+++++++++ +.--..+.+ .+...+..+ +...|+++|.+++|+ ||
T Consensus 103 AvrlGAdAV~~~v~~G-s~~E~~~l~~l~~v~~ea~~~G~Plla~~pr----G~~~~~~~~-~ia~aaRiaaELGAD-iV 175 (264)
T PRK08227 103 AVRLNACAVAAQVFIG-SEYEHQSIKNIIQLVDAGLRYGMPVMAVTAV----GKDMVRDAR-YFSLATRIAAEMGAQ-II 175 (264)
T ss_pred HHHCCCCEEEEEEecC-CHHHHHHHHHHHHHHHHHHHhCCcEEEEecC----CCCcCchHH-HHHHHHHHHHHHcCC-EE
Confidence 9999999998853222 334467888889999999985 110001111 111123345 666778899999999 44
Q ss_pred EEcCCchHHHHHHhhCCCCcEEEE
Q 010627 395 VLTRGGSTAKLVAKYRPGMPILSV 418 (505)
Q Consensus 395 v~T~sG~ta~~ls~~RP~~pIiav 418 (505)
=...+|.+-..+-.--| +||+.-
T Consensus 176 K~~y~~~~f~~vv~a~~-vPVvia 198 (264)
T PRK08227 176 KTYYVEEGFERITAGCP-VPIVIA 198 (264)
T ss_pred ecCCCHHHHHHHHHcCC-CcEEEe
Confidence 44445633333333333 576654
No 69
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=91.42 E-value=2.3 Score=44.57 Aligned_cols=126 Identities=19% Similarity=0.079 Sum_probs=77.9
Q ss_pred ChhcHHHHHhcccc--cCCCEEEE--cCCCChhHHHHHHHHHhccCCCceEEE-EecCHHHHhcHHHHHhcCCeeEEecC
Q 010627 186 TEKDKEDILKWGIP--NQIDMIAL--SFVRKGSDLVGVRKLLGGHAKNILLMS-KVENQEGVANFDDILANSDAFMVARG 260 (505)
Q Consensus 186 te~D~~di~~~al~--~g~d~V~~--sfV~sa~dv~~v~~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~sDgImIaRg 260 (505)
.+.|.+-+ +..++ .|+|+|.+ ++=.|...+..++. +++...++.||| -+-|+++.++|-+ +-+|++-||=|
T Consensus 106 ~~~d~er~-~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~-ik~~~P~~~vIaGNV~T~e~a~~Li~--aGAD~vKVGIG 181 (346)
T PRK05096 106 SDADFEKT-KQILALSPALNFICIDVANGYSEHFVQFVAK-AREAWPDKTICAGNVVTGEMVEELIL--SGADIVKVGIG 181 (346)
T ss_pred CHHHHHHH-HHHHhcCCCCCEEEEECCCCcHHHHHHHHHH-HHHhCCCCcEEEecccCHHHHHHHHH--cCCCEEEEccc
Confidence 55666666 55555 59998875 34444444444443 444444555555 5899999877543 45899987543
Q ss_pred cccCcCCch----h--HHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 261 DLGMEIPIE----K--IFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 261 DLg~e~~~~----~--v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
-=++-.... - -..+-....++|++.|+|+|-=.- .. --.|++.|+..|+|++||.
T Consensus 182 pGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGG---------i~---~sGDI~KAlaaGAd~VMlG 242 (346)
T PRK05096 182 PGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGG---------CT---VPGDVAKAFGGGADFVMLG 242 (346)
T ss_pred CCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCC---------cc---cccHHHHHHHcCCCEEEeC
Confidence 222221111 1 223446777888899999984221 11 2379999999999999993
No 70
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=91.21 E-value=15 Score=38.91 Aligned_cols=165 Identities=16% Similarity=0.172 Sum_probs=106.0
Q ss_pred CCCcccCCccccCCCCChhcHHHHHhcccccCCCEEEEcC-CCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHH
Q 010627 170 RKNVNLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSF-VRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDI 248 (505)
Q Consensus 170 ~Kgvnlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~sf-V~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI 248 (505)
|-|-..|+. .+|..++..|.+...+.|++.|=+.| +.+.++.+.++.+.. .+.+..+.+.+-. -.+.++..
T Consensus 9 RDG~Q~~~~-----~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~-~~~~~~v~~~~r~--~~~di~~a 80 (363)
T TIGR02090 9 RDGEQTPGV-----SLTVEQKVEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQ-EGLNAEICSLARA--LKKDIDKA 80 (363)
T ss_pred CCcCCCCCC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHh-cCCCcEEEEEccc--CHHHHHHH
Confidence 344444554 34777888886777779999987754 566777766666554 3556677766532 12223333
Q ss_pred Hhc-CCeeEE--ecCcccC----cCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHH-HHHcC
Q 010627 249 LAN-SDAFMV--ARGDLGM----EIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDG 320 (505)
Q Consensus 249 ~~~-sDgImI--aRgDLg~----e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~n-av~~G 320 (505)
++. .|.|.+ +-.|+-. ....++........++.|+++|..+.+.. ....+-+...+.+++. +...|
T Consensus 81 ~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~------eda~r~~~~~l~~~~~~~~~~g 154 (363)
T TIGR02090 81 IDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSA------EDATRTDIDFLIKVFKRAEEAG 154 (363)
T ss_pred HHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEE------eecCCCCHHHHHHHHHHHHhCC
Confidence 333 465444 3333321 12345556666788999999999886542 2334556666766666 46679
Q ss_pred CceeeecccCCCCCCHHHHHHHHHHHHHH
Q 010627 321 TDCVMLSGETAAGAYPEVAVRTMAQICVE 349 (505)
Q Consensus 321 ~D~imLs~Eta~G~yP~~~V~~m~~i~~~ 349 (505)
+|.|.| .+|.=..+|.++-+.+..+...
T Consensus 155 ~~~i~l-~DT~G~~~P~~v~~li~~l~~~ 182 (363)
T TIGR02090 155 ADRINI-ADTVGVLTPQKMEELIKKLKEN 182 (363)
T ss_pred CCEEEE-eCCCCccCHHHHHHHHHHHhcc
Confidence 999999 5788788999988888887644
No 71
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=90.90 E-value=6.5 Score=39.58 Aligned_cols=90 Identities=11% Similarity=0.135 Sum_probs=64.1
Q ss_pred HHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehh
Q 010627 215 DLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQ 294 (505)
Q Consensus 215 dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATq 294 (505)
.++.++++.++. .+.+++-+-+++.++-+ .+.+|.+.|+-+++.. ..+++++.+.||||++.|.
T Consensus 67 gl~~L~~~~~~~--Gl~~~Tev~d~~~v~~~---~e~vdilqIgs~~~~n-----------~~LL~~va~tgkPVilk~G 130 (250)
T PRK13397 67 GIRYLHEVCQEF--GLLSVSEIMSERQLEEA---YDYLDVIQVGARNMQN-----------FEFLKTLSHIDKPILFKRG 130 (250)
T ss_pred HHHHHHHHHHHc--CCCEEEeeCCHHHHHHH---HhcCCEEEECcccccC-----------HHHHHHHHccCCeEEEeCC
Confidence 455666665544 46788877776665544 4469999999877743 5577788888999998765
Q ss_pred hhHhhhcCCCCChHHHHHHHHHHH-cCCceeeecc
Q 010627 295 MLESMIKSPRPTRAEATDVANAVL-DGTDCVMLSG 328 (505)
Q Consensus 295 mLeSM~~~~~ptraEv~Dv~nav~-~G~D~imLs~ 328 (505)
+ .+|-.|+...+..+. .|..-++|..
T Consensus 131 ~--------~~t~~e~~~A~e~i~~~Gn~~i~L~e 157 (250)
T PRK13397 131 L--------MATIEEYLGALSYLQDTGKSNIILCE 157 (250)
T ss_pred C--------CCCHHHHHHHHHHHHHcCCCeEEEEc
Confidence 3 467789988888776 5776677753
No 72
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=90.89 E-value=3.9 Score=39.81 Aligned_cols=133 Identities=20% Similarity=0.183 Sum_probs=71.4
Q ss_pred HHHHHhcccccCCCEEEEc--CCCCh--hHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc-CCeeEEecCcccC
Q 010627 190 KEDILKWGIPNQIDMIALS--FVRKG--SDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN-SDAFMVARGDLGM 264 (505)
Q Consensus 190 ~~di~~~al~~g~d~V~~s--fV~sa--~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-sDgImIaRgDLg~ 264 (505)
.+.+ +.+.+.|+|+|.+- ...++ +++.++.+.+++. ..+.+++-.-|.+-+ ....+. +|.+.+..+++..
T Consensus 78 ~~~v-~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v~t~ee~---~~a~~~G~d~i~~~~~g~t~ 152 (221)
T PRK01130 78 LKEV-DALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADCSTLEEG---LAAQKLGFDFIGTTLSGYTE 152 (221)
T ss_pred HHHH-HHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeCCCHHHH---HHHHHcCCCEEEcCCceeec
Confidence 3456 77788999977653 33233 6777777777664 567777765543322 222222 5877775444422
Q ss_pred cC--CchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHH
Q 010627 265 EI--PIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRT 342 (505)
Q Consensus 265 e~--~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~ 342 (505)
.- ........-+++.+ ..++|++.+..+ -|. .|+..+...|+|++++... +-+ |....+.
T Consensus 153 ~~~~~~~~~~~~i~~i~~---~~~iPvia~GGI---------~t~---~~~~~~l~~GadgV~iGsa--i~~-~~~~~~~ 214 (221)
T PRK01130 153 ETKKPEEPDFALLKELLK---AVGCPVIAEGRI---------NTP---EQAKKALELGAHAVVVGGA--ITR-PEEITKW 214 (221)
T ss_pred CCCCCCCcCHHHHHHHHH---hCCCCEEEECCC---------CCH---HHHHHHHHCCCCEEEEchH--hcC-CHHHHHH
Confidence 11 11111122222222 237999875442 222 4566777889999999733 322 4444444
Q ss_pred HHH
Q 010627 343 MAQ 345 (505)
Q Consensus 343 m~~ 345 (505)
+.+
T Consensus 215 ~~~ 217 (221)
T PRK01130 215 FVD 217 (221)
T ss_pred HHH
Confidence 433
No 73
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=90.87 E-value=22 Score=37.83 Aligned_cols=157 Identities=15% Similarity=0.114 Sum_probs=100.0
Q ss_pred CCChhcHHHHHhcccccCCCEEEEcCCC-ChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc-CCeeEE--ec
Q 010627 184 TLTEKDKEDILKWGIPNQIDMIALSFVR-KGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN-SDAFMV--AR 259 (505)
Q Consensus 184 ~lte~D~~di~~~al~~g~d~V~~sfV~-sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-sDgImI--aR 259 (505)
.+|..++..|.+...+.|+|.|=+.|-. +.++.+.++.+. +.+.+..+++-.-. -.+.++..++. .|.|-+ .-
T Consensus 22 ~~s~e~k~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~-~~~~~~~i~~~~r~--~~~di~~a~~~g~~~i~i~~~~ 98 (378)
T PRK11858 22 VFTNEEKLAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIA-KLGLNASILALNRA--VKSDIDASIDCGVDAVHIFIAT 98 (378)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHH-hcCCCeEEEEEccc--CHHHHHHHHhCCcCEEEEEEcC
Confidence 3477777777677777899998775543 334445555443 34555566665322 12234444443 354433 33
Q ss_pred Cccc----CcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHH-HHcCCceeeecccCCCCC
Q 010627 260 GDLG----MEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANA-VLDGTDCVMLSGETAAGA 334 (505)
Q Consensus 260 gDLg----~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~na-v~~G~D~imLs~Eta~G~ 334 (505)
.|+- .....++.....+..++.|++.|..|.+. .....+-+...+.+++.+ ...|+|.|.| .+|.=.-
T Consensus 99 Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~------~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l-~DT~G~~ 171 (378)
T PRK11858 99 SDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFS------AEDASRTDLDFLIEFAKAAEEAGADRVRF-CDTVGIL 171 (378)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE------eccCCCCCHHHHHHHHHHHHhCCCCEEEE-eccCCCC
Confidence 3431 11234566666788899999999988764 224455667777777764 5579999999 5888888
Q ss_pred CHHHHHHHHHHHHHHH
Q 010627 335 YPEVAVRTMAQICVEA 350 (505)
Q Consensus 335 yP~~~V~~m~~i~~~a 350 (505)
.|.++-+.+..+.+..
T Consensus 172 ~P~~v~~lv~~l~~~~ 187 (378)
T PRK11858 172 DPFTMYELVKELVEAV 187 (378)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999888887654
No 74
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=90.86 E-value=3.2 Score=39.54 Aligned_cols=132 Identities=10% Similarity=0.023 Sum_probs=75.7
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccC---cCCchhH
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGM---EIPIEKI 271 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~---e~~~~~v 271 (505)
+.+.+.|+|+|.++--.+. +..+..+.+...+ +.+..-+......+.+.++...+|.+.++.-+-|. ..+...+
T Consensus 74 ~~~~~~g~dgv~vh~~~~~-~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~ 150 (211)
T cd00429 74 EAFAKAGADIITFHAEATD-HLHRTIQLIKELG--MKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQKFIPEVL 150 (211)
T ss_pred HHHHHcCCCEEEECccchh-hHHHHHHHHHHCC--CeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCCcccCHHHH
Confidence 6667899999998887663 3344444444444 34444443222356677777778988776433322 2222211
Q ss_pred HHHHHHHHHHHH--HcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHH
Q 010627 272 FLAQKVMIYKCN--IQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTM 343 (505)
Q Consensus 272 ~~~qk~Ii~~~~--~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m 343 (505)
..+ +++.+... ....|++++.-+ + . .++..+...|+|++.....-.--..|.++++.+
T Consensus 151 ~~i-~~~~~~~~~~~~~~pi~v~GGI----------~--~-env~~~~~~gad~iivgsai~~~~~~~~~~~~~ 210 (211)
T cd00429 151 EKI-RKLRELIPENNLNLLIEVDGGI----------N--L-ETIPLLAEAGADVLVAGSALFGSDDYAEAIKEL 210 (211)
T ss_pred HHH-HHHHHHHHhcCCCeEEEEECCC----------C--H-HHHHHHHHcCCCEEEECHHHhCCCCHHHHHHHh
Confidence 111 12211111 224788765431 1 1 456777788999999987766667787777654
No 75
>PLN03034 phosphoglycerate kinase; Provisional
Probab=90.78 E-value=1.4 Score=48.17 Aligned_cols=330 Identities=17% Similarity=0.205 Sum_probs=171.6
Q ss_pred CCCCCCCCcccccCCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHH----HHHHHHHHHHHHHHHcCCeeEE
Q 010627 1 MDANCGVSTAIEKKPKTKIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHE----YHQETLNNLRTAMVNTGILCAV 76 (505)
Q Consensus 1 ~~~~~~~~~~~~~~r~tkIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~----~~~~~i~~ir~~~~~~~~~v~i 76 (505)
+|.|.|++..-.=.-.++|-+++ ..|+.|++.|..+.= +||-..- ....+-.-.+..++.++++|..
T Consensus 99 vD~NvPi~~~g~I~Dd~RI~a~l-------pTI~~L~~~gakvVl--~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f 169 (481)
T PLN03034 99 ADLNVPLDDNQNITDDTRIRAAI-------PTIKYLISNGAKVIL--SSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVK 169 (481)
T ss_pred eccCCCcCCCCcccChHhHHHHH-------HHHHHHHHCCCeEEE--EEecCCCCCCCcccCHHHHHHHHHHHhCCCeEE
Confidence 47787775321112346666655 379999999998755 4775421 1222223333445567899988
Q ss_pred EEecCCCeeEEeecCCCCcEEecCCCEEEEEecCCCCCCccEEEecchhhhcccCCCCEEEEeCCeEEEEEEEEeeeCCe
Q 010627 77 MLDTKGPEIRTGFLKDGKPIQLKQGQEITISTDYTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGL 156 (505)
Q Consensus 77 ~~Dl~GpkiR~g~~~~~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~~~ 156 (505)
.=|.-||+++- .+ -.|+.|+.+.|-.-.-..+.+ -|.++|.+.+.+.-.||++|.- -+- ....-+
T Consensus 170 v~d~~G~~~~~-~i-----~~l~~GeVlLLENvRF~~eE~----~nd~~fa~~LA~l~DiyVNDAF---gta--HR~haS 234 (481)
T PLN03034 170 ADDCIGPEVEK-LV-----ASLPEGGVLLLENVRFYKEEE----KNEPEFAKKLASLADLYVNDAF---GTA--HRAHAS 234 (481)
T ss_pred CCCCCCHHHHH-HH-----hcCCCCcEEEEeccCcCcccc----cCcHHHHHHHHhhCCEEEecch---hhh--Hhcccc
Confidence 88888888761 11 135666665554321111111 1556788887776668998832 211 000000
Q ss_pred EEEEEeeCceecCCCCcccCCccccCCCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCC-ceEE--
Q 010627 157 VKCRCENSAMLGERKNVNLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKN-ILLM-- 233 (505)
Q Consensus 157 i~~~v~~gG~l~s~Kgvnlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~-~~Ii-- 233 (505)
+ ..+| ++.-..-+-++ + .+++..+.+.+..-.+. +.|+
T Consensus 235 ~----------------------vGi~-----------~~l~ps~aG~L---m---ekEl~~L~k~~~~p~rP~vaIlGG 275 (481)
T PLN03034 235 T----------------------EGVT-----------KFLKPSVAGFL---L---QKELDYLVGAVSNPKRPFAAIVGG 275 (481)
T ss_pred h----------------------hhhh-----------hhcCcchhhHH---H---HHHHHHHHHHHcCCCCceEEEEcC
Confidence 0 0000 00000000001 0 34566666655432211 2233
Q ss_pred EEecCHHHHhcHHHHHhcCCeeEEecC-------cccCcCCc----hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcC
Q 010627 234 SKVENQEGVANFDDILANSDAFMVARG-------DLGMEIPI----EKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKS 302 (505)
Q Consensus 234 akIEt~~av~nldeI~~~sDgImIaRg-------DLg~e~~~----~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~ 302 (505)
||+.+.-++ ++.++..+|.+++|-| -+|.++|. ++....-++|++.+++.|+.+++-.-..-.=...
T Consensus 276 aKVsdKI~v--i~~Ll~kvD~lliGG~ma~tFl~A~G~~IG~slvE~d~i~~A~~il~~a~~~gv~I~lPvD~v~a~~~~ 353 (481)
T PLN03034 276 SKVSSKIGV--IESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLELATSLLAKAKAKGVSLLLPTDVVIADKFA 353 (481)
T ss_pred ccHHhHHHH--HHHHHHhcCEEEECcHHHHHHHHHcCCCcchhhcChhhhHHHHHHHHHHHhcCCEEECCceEEEecccC
Confidence 688876655 8888888999999743 34555553 3455566799999999998876533222100000
Q ss_pred CCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCchh--hHHhhhhCCCCCCCchhhHHHH
Q 010627 303 PRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDYGD--VFKRVMQHSPVPMSPLESLASS 380 (505)
Q Consensus 303 ~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~--~~~~~~~~~~~~~~~~~~ia~~ 380 (505)
+...+. ..++ ..+-+ |...|. +|. ++++...+++.++...+|.-. .|+. +.-..-+.+++.+
T Consensus 354 ~~~~~~-~~~~-~~Ip~--~~~~lD----IGp---~Ti~~~~~~i~~akTI~WNGPmGvFE~-----~~Fa~GT~~l~~a 417 (481)
T PLN03034 354 PDANSK-IVPA-SAIPD--GWMGLD----IGP---DSVKTFNEALDTTQTVIWNGPMGVFEF-----EKFAVGTEAVAKK 417 (481)
T ss_pred CCCCeE-Eeeh-hcCCC--CCEEEe----cCH---HHHHHHHHHHhhCCEEEEECCcccccC-----CcchHHHHHHHHH
Confidence 000011 1111 11222 233332 443 889999999999998887532 2331 1111234555555
Q ss_pred HHHHHHhcCCcEEEEEcCCchHHHHHHhhCCCCcE
Q 010627 381 AVRTANSARATLILVLTRGGSTAKLVAKYRPGMPI 415 (505)
Q Consensus 381 av~~a~~~~a~~Ivv~T~sG~ta~~ls~~RP~~pI 415 (505)
..++. +.++. .+--.|.|+..+.++-..-.+
T Consensus 418 ia~~~-~~~a~---sIvGGGDt~aAi~~~g~~~~~ 448 (481)
T PLN03034 418 LAELS-GKGVT---TIIGGGDSVAAVEKVGVADVM 448 (481)
T ss_pred HHHhh-cCCCe---EEEcCcHHHHHHHHcCCccce
Confidence 44422 22333 333468888888887654443
No 76
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=90.72 E-value=6.4 Score=40.05 Aligned_cols=128 Identities=12% Similarity=0.155 Sum_probs=73.5
Q ss_pred hhcHHHHHhcccccCCCEEEEc------------CCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc---
Q 010627 187 EKDKEDILKWGIPNQIDMIALS------------FVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN--- 251 (505)
Q Consensus 187 e~D~~di~~~al~~g~d~V~~s------------fV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~--- 251 (505)
..|..+..+.+.+.|+|+|=+. +-.+++.+.++-+.+++. .++.|++||= + ..++..+|++.
T Consensus 101 ~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~-~~~Pv~vKl~-~-~~~~~~~~a~~~~~ 177 (296)
T cd04740 101 VEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA-TDVPVIVKLT-P-NVTDIVEIARAAEE 177 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc-cCCCEEEEeC-C-CchhHHHHHHHHHH
Confidence 3455555477778899999663 345666666666666543 2678999983 2 22344455442
Q ss_pred --CCeeEEe-----cC-cccC-------c----CCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHH
Q 010627 252 --SDAFMVA-----RG-DLGM-------E----IPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATD 312 (505)
Q Consensus 252 --sDgImIa-----Rg-DLg~-------e----~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~D 312 (505)
+|+|.+- +. |+.. + -|....+...+.+-+.....+.|+|....+- ...|
T Consensus 178 ~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~------------~~~d 245 (296)
T cd04740 178 AGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIA------------SGED 245 (296)
T ss_pred cCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCC------------CHHH
Confidence 4887652 11 2210 0 0111122233333344444589988765433 2357
Q ss_pred HHHHHHcCCceeeeccc
Q 010627 313 VANAVLDGTDCVMLSGE 329 (505)
Q Consensus 313 v~nav~~G~D~imLs~E 329 (505)
+..++..|+|+|++..-
T Consensus 246 a~~~l~~GAd~V~igra 262 (296)
T cd04740 246 ALEFLMAGASAVQVGTA 262 (296)
T ss_pred HHHHHHcCCCEEEEchh
Confidence 78888999999999643
No 77
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=90.67 E-value=9.5 Score=38.93 Aligned_cols=206 Identities=17% Similarity=0.088 Sum_probs=121.9
Q ss_pred CCCCcccCCccccCCCCChhcHHHHHhcccc-cCCCEEEEc-CCCChhHHHHHHHHHhccC-----CCceEEEEecCHHH
Q 010627 169 ERKNVNLPGVIVDLPTLTEKDKEDILKWGIP-NQIDMIALS-FVRKGSDLVGVRKLLGGHA-----KNILLMSKVENQEG 241 (505)
Q Consensus 169 s~Kgvnlp~~~~~l~~lte~D~~di~~~al~-~g~d~V~~s-fV~sa~dv~~v~~~l~~~~-----~~~~IiakIEt~~a 241 (505)
.|-|..-|+.. +|.+++..|.+..++ .|++.|=+. |.-+++|.+.++++..... .+..+++.+.+..+
T Consensus 5 lRDG~Q~~~~~-----~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~~~~ 79 (280)
T cd07945 5 LRDGEQTSGVS-----FSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVDGDKS 79 (280)
T ss_pred CCCcCcCCCCc-----cCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEecCcHHH
Confidence 35555556653 477777787343234 499999775 5589977777777664211 14667777766555
Q ss_pred HhcHHHHHhc-CCeeEEe--cCcccCc----CCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCC-CCChHHHHHH
Q 010627 242 VANFDDILAN-SDAFMVA--RGDLGME----IPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSP-RPTRAEATDV 313 (505)
Q Consensus 242 v~nldeI~~~-sDgImIa--RgDLg~e----~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~-~ptraEv~Dv 313 (505)
++. .++. .|.|-+. -.|.-.. ...++.....+.+++.|+.+|..+.+.-.. ..+| +-+...+.++
T Consensus 80 ~~~---A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d----~~~~~r~~~~~~~~~ 152 (280)
T cd07945 80 VDW---IKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED----WSNGMRDSPDYVFQL 152 (280)
T ss_pred HHH---HHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe----CCCCCcCCHHHHHHH
Confidence 443 3333 4654442 2222211 234566666788899999999887654321 1122 2234555665
Q ss_pred HH-HHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCchhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcCCcE
Q 010627 314 AN-AVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDYGDVFKRVMQHSPVPMSPLESLASSAVRTANSARATL 392 (505)
Q Consensus 314 ~n-av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~ 392 (505)
+. +...|+|.|.| .+|.=.-.|.++-+.++.+.+.... ....-|++ + .--+|.+-...|.+.+++
T Consensus 153 ~~~~~~~G~~~i~l-~DT~G~~~P~~v~~l~~~l~~~~~~-~~i~~H~H----------n-d~Gla~AN~laA~~aGa~- 218 (280)
T cd07945 153 VDFLSDLPIKRIML-PDTLGILSPFETYTYISDMVKRYPN-LHFDFHAH----------N-DYDLAVANVLAAVKAGIK- 218 (280)
T ss_pred HHHHHHcCCCEEEe-cCCCCCCCHHHHHHHHHHHHhhCCC-CeEEEEeC----------C-CCCHHHHHHHHHHHhCCC-
Confidence 55 55679999999 6888888999998888887643321 11111111 1 122455556677888988
Q ss_pred EEEEcCCc
Q 010627 393 ILVLTRGG 400 (505)
Q Consensus 393 Ivv~T~sG 400 (505)
.|=-|-.|
T Consensus 219 ~vd~s~~G 226 (280)
T cd07945 219 GLHTTVNG 226 (280)
T ss_pred EEEEeccc
Confidence 35555554
No 78
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=90.67 E-value=5.6 Score=37.77 Aligned_cols=128 Identities=18% Similarity=0.109 Sum_probs=71.7
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceE-EEEecCHHHHhcHHHHHh-cCCeeEEecCcccCcCCchhHH
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILL-MSKVENQEGVANFDDILA-NSDAFMVARGDLGMEIPIEKIF 272 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~I-iakIEt~~av~nldeI~~-~sDgImIaRgDLg~e~~~~~v~ 272 (505)
+.+.++|+|++.++.-...+...++.+++++.|..+.+ +..-.|+.-+. . ..+ -+|.+.+.++--+...+.....
T Consensus 71 ~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~--~-~~~~~~d~v~~~~~~~~~~~~~~~~~ 147 (202)
T cd04726 71 EMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRA--K-LLKLGVDIVILHRGIDAQAAGGWWPE 147 (202)
T ss_pred HHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHH--H-HHHCCCCEEEEcCcccccccCCCCCH
Confidence 56678899999998876666777787878766533222 23455554443 2 444 5798888654211122111111
Q ss_pred HHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHH
Q 010627 273 LAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVR 341 (505)
Q Consensus 273 ~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~ 341 (505)
+.+-+.......|+.+..- -+ ..++..+...|+|++.+.+--.--..|.++++
T Consensus 148 ---~~i~~~~~~~~~~i~~~GG----------I~---~~~i~~~~~~Gad~vvvGsai~~~~d~~~~~~ 200 (202)
T cd04726 148 ---DDLKKVKKLLGVKVAVAGG----------IT---PDTLPEFKKAGADIVIVGRAITGAADPAEAAR 200 (202)
T ss_pred ---HHHHHHHhhcCCCEEEECC----------cC---HHHHHHHHhcCCCEEEEeehhcCCCCHHHHHh
Confidence 2222222225677765322 12 13567788889999999654333344655554
No 79
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=90.60 E-value=3 Score=42.09 Aligned_cols=91 Identities=21% Similarity=0.253 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010627 213 GSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTA 292 (505)
Q Consensus 213 a~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~A 292 (505)
.+.++.++++.++. .+.+++-+-+...++-+. +..|.+.||-+++.. ..+++++.+.||||++.
T Consensus 75 ~~gl~~l~~~~~~~--Gl~~~t~~~d~~~~~~l~---~~~d~lkI~s~~~~n-----------~~LL~~~a~~gkPVilk 138 (260)
T TIGR01361 75 EEGLKLLRRAADEH--GLPVVTEVMDPRDVEIVA---EYADILQIGARNMQN-----------FELLKEVGKQGKPVLLK 138 (260)
T ss_pred HHHHHHHHHHHHHh--CCCEEEeeCChhhHHHHH---hhCCEEEECcccccC-----------HHHHHHHhcCCCcEEEe
Confidence 56677788887665 478888887776665554 457999999877642 33788888899999998
Q ss_pred hhhhHhhhcCCCCChHHHHHHHHHHH-cCCceeeec
Q 010627 293 TQMLESMIKSPRPTRAEATDVANAVL-DGTDCVMLS 327 (505)
Q Consensus 293 TqmLeSM~~~~~ptraEv~Dv~nav~-~G~D~imLs 327 (505)
|.|. +|-.|+...+..+. .|.+-++|.
T Consensus 139 ~G~~--------~t~~e~~~Ave~i~~~Gn~~i~l~ 166 (260)
T TIGR01361 139 RGMG--------NTIEEWLYAAEYILSSGNGNVILC 166 (260)
T ss_pred CCCC--------CCHHHHHHHHHHHHHcCCCcEEEE
Confidence 7655 45688888787775 587667774
No 80
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=90.50 E-value=6.2 Score=38.68 Aligned_cols=130 Identities=18% Similarity=0.160 Sum_probs=79.5
Q ss_pred CCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEe-----------cCHHHHhcHHHHHhc
Q 010627 183 PTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKV-----------ENQEGVANFDDILAN 251 (505)
Q Consensus 183 ~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakI-----------Et~~av~nldeI~~~ 251 (505)
|..+..|.+.+.+.+.+.|+|.++++ +..+...+..+. + ...++.++ .+..-+..+++.++.
T Consensus 16 p~~~~~d~~~~~~~~~~~g~~av~v~----~~~~~~~~~~~~--~-~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~~ 88 (235)
T cd00958 16 PNPGLEDPEETVKLAAEGGADAVALT----KGIARAYGREYA--G-DIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVRL 88 (235)
T ss_pred CCccccCHHHHHHHHHhcCCCEEEeC----hHHHHhcccccC--C-CCcEEEEECCCCCCCCCCCCchhhhcCHHHHHHC
Confidence 55577888877788999999999998 444555444442 1 22233222 112223345665654
Q ss_pred -CCee--EEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCC----CCChHHHHH-HHHHHHcCCce
Q 010627 252 -SDAF--MVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSP----RPTRAEATD-VANAVLDGTDC 323 (505)
Q Consensus 252 -sDgI--mIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~----~ptraEv~D-v~nav~~G~D~ 323 (505)
+|++ .+-.+++. ..++...-+++.+.|+++|.|+|+=+.. ... .-+..++.. ...+...|+|.
T Consensus 89 Ga~~v~~~~~~~~~~----~~~~~~~i~~v~~~~~~~g~~~iie~~~-----~g~~~~~~~~~~~i~~~~~~a~~~GaD~ 159 (235)
T cd00958 89 GADAVGVTVYVGSEE----EREMLEELARVAAEAHKYGLPLIAWMYP-----RGPAVKNEKDPDLIAYAARIGAELGADI 159 (235)
T ss_pred CCCEEEEEEecCCch----HHHHHHHHHHHHHHHHHcCCCEEEEEec-----cCCcccCccCHHHHHHHHHHHHHHCCCE
Confidence 6777 44445442 4567777789999999999999872211 000 012345554 45577889999
Q ss_pred eeecc
Q 010627 324 VMLSG 328 (505)
Q Consensus 324 imLs~ 328 (505)
+-++.
T Consensus 160 Ik~~~ 164 (235)
T cd00958 160 VKTKY 164 (235)
T ss_pred EEecC
Confidence 99853
No 81
>PRK00915 2-isopropylmalate synthase; Validated
Probab=90.14 E-value=21 Score=39.57 Aligned_cols=157 Identities=15% Similarity=0.146 Sum_probs=104.4
Q ss_pred CCChhcHHHHHhcccccCCCEEEEcC-CCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHh---cC--C--ee
Q 010627 184 TLTEKDKEDILKWGIPNQIDMIALSF-VRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILA---NS--D--AF 255 (505)
Q Consensus 184 ~lte~D~~di~~~al~~g~d~V~~sf-V~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~---~s--D--gI 255 (505)
.+|..++..|.+...+.|+|.|=+.| ..++.|.+.++.+.. ...+..+.+..-.. .+.++..++ .+ + .+
T Consensus 22 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~-~~~~~~i~a~~r~~--~~did~a~~a~~~~~~~~v~i 98 (513)
T PRK00915 22 SLTVEEKLQIAKQLERLGVDVIEAGFPASSPGDFEAVKRIAR-TVKNSTVCGLARAV--KKDIDAAAEALKPAEAPRIHT 98 (513)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCChHHHHHHHHHHh-hCCCCEEEEEccCC--HHHHHHHHHHhhcCCCCEEEE
Confidence 35778887876777779999998866 568888888877654 34556666665321 223443332 22 2 34
Q ss_pred EEecCcccC----cCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHH-HHcCCceeeecccC
Q 010627 256 MVARGDLGM----EIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANA-VLDGTDCVMLSGET 330 (505)
Q Consensus 256 mIaRgDLg~----e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~na-v~~G~D~imLs~Et 330 (505)
+++-.|+-. ....+++.......++.|+++|..|.+..+ ...+-+...+.+++.+ ...|+|.+.| .+|
T Consensus 99 ~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~e------d~~r~d~~~l~~~~~~~~~~Ga~~i~l-~DT 171 (513)
T PRK00915 99 FIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAE------DATRTDLDFLCRVVEAAIDAGATTINI-PDT 171 (513)
T ss_pred EECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeC------CCCCCCHHHHHHHHHHHHHcCCCEEEE-ccC
Confidence 555555532 233456667778899999999998865432 2233344556666664 4569999999 689
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 010627 331 AAGAYPEVAVRTMAQICVEA 350 (505)
Q Consensus 331 a~G~yP~~~V~~m~~i~~~a 350 (505)
.=+..|.+.-+.+..+.+..
T Consensus 172 vG~~~P~~~~~~i~~l~~~~ 191 (513)
T PRK00915 172 VGYTTPEEFGELIKTLRERV 191 (513)
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 98999999998888887553
No 82
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=89.89 E-value=2.7 Score=46.47 Aligned_cols=118 Identities=15% Similarity=0.151 Sum_probs=67.3
Q ss_pred HHHHHhcccccCCCEEEEcCCCChhH----HHHHHHHHhccCCCceEEE-EecCHHHHhcHHHHHhcCCeeEEecCc---
Q 010627 190 KEDILKWGIPNQIDMIALSFVRKGSD----LVGVRKLLGGHAKNILLMS-KVENQEGVANFDDILANSDAFMVARGD--- 261 (505)
Q Consensus 190 ~~di~~~al~~g~d~V~~sfV~sa~d----v~~v~~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~sDgImIaRgD--- 261 (505)
.+-+ +..++.|+|+|.+. .+... ++.++.+-...+.++.|+| -|.|+++.+.+-+ +-+|+|.||.|-
T Consensus 244 ~~ra-~~Lv~aGvd~i~vd--~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~--aGAd~I~vg~g~Gs~ 318 (502)
T PRK07107 244 AERV-PALVEAGADVLCID--SSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAE--AGADFVKVGIGGGSI 318 (502)
T ss_pred HHHH-HHHHHhCCCeEeec--CcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHH--cCCCEEEECCCCCcC
Confidence 3444 66778899999887 22222 3333322222233455665 5888888765543 458999995432
Q ss_pred ------ccCcCCchhHHHHHHHHHHHHH----HcC--CCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 262 ------LGMEIPIEKIFLAQKVMIYKCN----IQG--KPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 262 ------Lg~e~~~~~v~~~qk~Ii~~~~----~~g--kpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
+|+-.| .+ .+-..+.++++ +.| +|+|.-.- .. --.|++.|+..|||++|+.
T Consensus 319 c~tr~~~~~g~~--~~-~ai~~~~~a~~~~~~~~g~~~~viadgG---------ir---~~gdi~KAla~GA~~vm~G 381 (502)
T PRK07107 319 CITREQKGIGRG--QA-TALIEVAKARDEYFEETGVYIPICSDGG---------IV---YDYHMTLALAMGADFIMLG 381 (502)
T ss_pred cccccccCCCcc--HH-HHHHHHHHHHHHHHhhcCCcceEEEcCC---------CC---chhHHHHHHHcCCCeeeeC
Confidence 222222 11 12223333333 347 78875222 21 2489999999999999993
No 83
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=89.87 E-value=2.6 Score=43.89 Aligned_cols=126 Identities=16% Similarity=0.192 Sum_probs=75.5
Q ss_pred CChhcHHHHHhcccccC--CCEEEEcC--CCChhHHHHHHHHHhccCCCceEEEE-ecCHHHHhcHHHHHhcCCeeEEec
Q 010627 185 LTEKDKEDILKWGIPNQ--IDMIALSF--VRKGSDLVGVRKLLGGHAKNILLMSK-VENQEGVANFDDILANSDAFMVAR 259 (505)
Q Consensus 185 lte~D~~di~~~al~~g--~d~V~~sf--V~sa~dv~~v~~~l~~~~~~~~Iiak-IEt~~av~nldeI~~~sDgImIaR 259 (505)
.++.|.+-+ ...++.| +|+|.+-- =.|...++.++. +++.-+.+.+|++ +-|++....+.+ .-+|+|.|+=
T Consensus 91 ~t~e~~~r~-~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~-i~~~~p~~~vi~GnV~t~e~a~~l~~--aGad~I~V~~ 166 (321)
T TIGR01306 91 VKACEYEFV-TQLAEEALTPEYITIDIAHGHSNSVINMIKH-IKTHLPDSFVIAGNVGTPEAVRELEN--AGADATKVGI 166 (321)
T ss_pred CCHHHHHHH-HHHHhcCCCCCEEEEeCccCchHHHHHHHHH-HHHhCCCCEEEEecCCCHHHHHHHHH--cCcCEEEECC
Confidence 377787777 7677878 69887643 333444444444 3333355678898 998888776654 3479999863
Q ss_pred CcccC-----cCCchhHHHHH-HHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 260 GDLGM-----EIPIEKIFLAQ-KVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 260 gDLg~-----e~~~~~v~~~q-k~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
|-=+. +.+. .++..| ..|.+.+.+..+|+|.-.-+- --.|++.|+..|+|++|+.
T Consensus 167 G~G~~~~tr~~~g~-g~~~~~l~ai~ev~~a~~~pVIadGGIr------------~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 167 GPGKVCITKIKTGF-GTGGWQLAALRWCAKAARKPIIADGGIR------------THGDIAKSIRFGASMVMIG 227 (321)
T ss_pred CCCccccceeeecc-CCCchHHHHHHHHHHhcCCeEEEECCcC------------cHHHHHHHHHcCCCEEeec
Confidence 21111 1111 111112 223333444578887543322 2379999999999999995
No 84
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=89.86 E-value=10 Score=38.46 Aligned_cols=106 Identities=16% Similarity=0.231 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010627 213 GSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTA 292 (505)
Q Consensus 213 a~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~A 292 (505)
.+.++.+++++++. .+.+++-+-++..++-+.+ ..|.+-||-+++.. ..+++++.+.||||++.
T Consensus 77 ~~gl~~l~~~~~~~--Gl~~~te~~d~~~~~~l~~---~vd~~kIga~~~~n-----------~~LL~~~a~~gkPV~lk 140 (266)
T PRK13398 77 EEGLKILKEVGDKY--NLPVVTEVMDTRDVEEVAD---YADMLQIGSRNMQN-----------FELLKEVGKTKKPILLK 140 (266)
T ss_pred HHHHHHHHHHHHHc--CCCEEEeeCChhhHHHHHH---hCCEEEECcccccC-----------HHHHHHHhcCCCcEEEe
Confidence 56677888888654 4788888877776665554 47999999777643 34666677899999997
Q ss_pred hhhhHhhhcCCCCChHHHHHHHHHHH-cCCceeee--cccCCCCCCHHHHHHH
Q 010627 293 TQMLESMIKSPRPTRAEATDVANAVL-DGTDCVML--SGETAAGAYPEVAVRT 342 (505)
Q Consensus 293 TqmLeSM~~~~~ptraEv~Dv~nav~-~G~D~imL--s~Eta~G~yP~~~V~~ 342 (505)
|.|- .|-.|+...+..+. .|..-++| .|=.....||.+.+.+
T Consensus 141 ~G~~--------~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl 185 (266)
T PRK13398 141 RGMS--------ATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDL 185 (266)
T ss_pred CCCC--------CCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHH
Confidence 6644 45567777776665 57754555 2221345888666554
No 85
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=89.86 E-value=5.9 Score=44.41 Aligned_cols=152 Identities=13% Similarity=0.077 Sum_probs=100.9
Q ss_pred hhcHHHHHhcccccCCCEEE--EcCCCChhHHHHHHHHHhccCCCceEEEEecC--HHHHhcHHHHHhcCCeeEEecCcc
Q 010627 187 EKDKEDILKWGIPNQIDMIA--LSFVRKGSDLVGVRKLLGGHAKNILLMSKVEN--QEGVANFDDILANSDAFMVARGDL 262 (505)
Q Consensus 187 e~D~~di~~~al~~g~d~V~--~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt--~~av~nldeI~~~sDgImIaRgDL 262 (505)
+...+.| ....+.|+|.|- +|-.+.++.+..+++.+.+.|.+++++|-|-- ..|+. . ++..|.|=|-||.+
T Consensus 41 ~atv~Qi-~~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~A~~---a-~~~v~kiRINPGN~ 115 (611)
T PRK02048 41 EACVAQA-KRIIDAGGEYVRLTTQGVREAENLMNINIGLRSQGYMVPLVADVHFNPKVADV---A-AQYAEKVRINPGNY 115 (611)
T ss_pred HHHHHHH-HHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHHHHH---H-HHhhCCEEECCCcC
Confidence 4445566 566788999865 45555666666667777777889999999843 33332 2 23389999999999
Q ss_pred cCc---C------------CchhHHHHHHHHHHHHHHcCCCeEEehh-------hhHhhhcCCCCChHHH-----HHHHH
Q 010627 263 GME---I------------PIEKIFLAQKVMIYKCNIQGKPVVTATQ-------MLESMIKSPRPTRAEA-----TDVAN 315 (505)
Q Consensus 263 g~e---~------------~~~~v~~~qk~Ii~~~~~~gkpvi~ATq-------mLeSM~~~~~ptraEv-----~Dv~n 315 (505)
+-. + .++++..--+.++++|+++|+|+=+-++ +|+.. -+|..-+ .-+.-
T Consensus 116 ~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN~GSL~~~i~~~y----g~tpe~mVeSAle~~~i 191 (611)
T PRK02048 116 VDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVNHGSLSDRIMSRY----GDTPEGMVESCMEFLRI 191 (611)
T ss_pred CCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHh----CCChHHHHHHHHHHHHH
Confidence 873 1 1235555667899999999999854442 33332 1233222 22333
Q ss_pred HHHcCCceeeecccCCCCCCHHHHHHHHHHHH
Q 010627 316 AVLDGTDCVMLSGETAAGAYPEVAVRTMAQIC 347 (505)
Q Consensus 316 av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~ 347 (505)
+-..|++=+.+|--.+.-..++.+.+.+..-.
T Consensus 192 ~e~~~f~diviS~KsS~~~~~V~AyRlLa~~l 223 (611)
T PRK02048 192 CVEEHFTDVVISIKASNTVVMVRTVRLLVAVM 223 (611)
T ss_pred HHHCCCCcEEEEEEeCCcHHHHHHHHHHHHHH
Confidence 66789999999988888777777666665544
No 86
>PLN02334 ribulose-phosphate 3-epimerase
Probab=89.75 E-value=10 Score=37.26 Aligned_cols=139 Identities=6% Similarity=-0.005 Sum_probs=76.3
Q ss_pred hcccccCCCEEEEcCCC-ChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc--CCeeEEecCcccCcCCchhH
Q 010627 195 KWGIPNQIDMIALSFVR-KGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN--SDAFMVARGDLGMEIPIEKI 271 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~-sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~--sDgImIaRgDLg~e~~~~~v 271 (505)
+.+.+.|+|+|.+..-+ ..+...+.-+.+.+.|..+.+...=.| -++.+.++++. .|.|.++.-.=|..- +..
T Consensus 82 ~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~~~t--~~~~~~~~~~~~~~Dyi~~~~v~pg~~~--~~~ 157 (229)
T PLN02334 82 PDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLNPGT--PVEAVEPVVEKGLVDMVLVMSVEPGFGG--QSF 157 (229)
T ss_pred HHHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEECCCC--CHHHHHHHHhccCCCEEEEEEEecCCCc--ccc
Confidence 45678899999777653 223343333344444544444442223 34557788888 999987543321111 111
Q ss_pred -HHHHHHHHHHHHH-cCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHH
Q 010627 272 -FLAQKVMIYKCNI-QGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVE 349 (505)
Q Consensus 272 -~~~qk~Ii~~~~~-~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~ 349 (505)
+....++-+.... .++|+.+..-+ |.. ++......|+|++.+.+--.--..|.++++.+.+.+.+
T Consensus 158 ~~~~~~~i~~~~~~~~~~~I~a~GGI----------~~e---~i~~l~~aGad~vvvgsai~~~~d~~~~~~~l~~~~~~ 224 (229)
T PLN02334 158 IPSMMDKVRALRKKYPELDIEVDGGV----------GPS---TIDKAAEAGANVIVAGSAVFGAPDYAEVISGLRASVEK 224 (229)
T ss_pred CHHHHHHHHHHHHhCCCCcEEEeCCC----------CHH---HHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHH
Confidence 1222222222222 24676543332 222 44566677999999976544345798998888776554
Q ss_pred H
Q 010627 350 A 350 (505)
Q Consensus 350 a 350 (505)
+
T Consensus 225 ~ 225 (229)
T PLN02334 225 A 225 (229)
T ss_pred h
Confidence 4
No 87
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=89.29 E-value=4.2 Score=37.34 Aligned_cols=115 Identities=15% Similarity=0.090 Sum_probs=67.4
Q ss_pred hcccccCCCEEEEcCCCC------hhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHh-cCCeeEEecCcccCcCC
Q 010627 195 KWGIPNQIDMIALSFVRK------GSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILA-NSDAFMVARGDLGMEIP 267 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~s------a~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~-~sDgImIaRgDLg~e~~ 267 (505)
+++.+.|+|+|.++.-.- .+.++++++.+ .+..++.++.......... ..+ -.|.+.+..+.-+....
T Consensus 78 ~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~----~~~~v~~~~~~~~~~~~~~-~~~~g~d~i~~~~~~~~~~~~ 152 (200)
T cd04722 78 AAARAAGADGVEIHGAVGYLAREDLELIRELREAV----PDVKVVVKLSPTGELAAAA-AEEAGVDEVGLGNGGGGGGGR 152 (200)
T ss_pred HHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhc----CCceEEEEECCCCccchhh-HHHcCCCEEEEcCCcCCCCCc
Confidence 567888999999988763 34445555443 3578888886544332211 122 25999987665443222
Q ss_pred chhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 268 IEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 268 ~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
... +.....+.......++|++.+.-+- + -.++..++..|+|+++++
T Consensus 153 ~~~-~~~~~~~~~~~~~~~~pi~~~GGi~---------~---~~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 153 DAV-PIADLLLILAKRGSKVPVIAGGGIN---------D---PEDAAEALALGADGVIVG 199 (200)
T ss_pred cCc-hhHHHHHHHHHhcCCCCEEEECCCC---------C---HHHHHHHHHhCCCEEEec
Confidence 111 1111222333456789999876532 1 245566777799999985
No 88
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=89.12 E-value=10 Score=36.42 Aligned_cols=136 Identities=9% Similarity=0.072 Sum_probs=74.6
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCC-c-hhHH
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIP-I-EKIF 272 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~-~-~~v~ 272 (505)
+.+.+.|+|+|.++.-.+. +.....+.+...+ ..+..-+......+.+.++...+|.+.+..-+-|..-. . ....
T Consensus 78 ~~~~~~g~d~v~vh~~~~~-~~~~~~~~~~~~~--~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~ 154 (220)
T PRK05581 78 PDFAKAGADIITFHVEASE-HIHRLLQLIKSAG--IKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFIPEVL 154 (220)
T ss_pred HHHHHcCCCEEEEeeccch-hHHHHHHHHHHcC--CEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCcccccHHHH
Confidence 5556889999999987664 4444444454444 34444443223466678888788988776433222211 1 1112
Q ss_pred HHHHHHHHHHHHcCCC--eEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHH
Q 010627 273 LAQKVMIYKCNIQGKP--VVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQI 346 (505)
Q Consensus 273 ~~qk~Ii~~~~~~gkp--vi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i 346 (505)
...+++.+.+..++.| +.++.- =|. .++..+...|+|++.+...-..-..|.++++.++++
T Consensus 155 ~~i~~~~~~~~~~~~~~~i~v~GG----------I~~---~nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~~~~ 217 (220)
T PRK05581 155 EKIRELRKLIDERGLDILIEVDGG----------INA---DNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRAE 217 (220)
T ss_pred HHHHHHHHHHHhcCCCceEEEECC----------CCH---HHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHH
Confidence 2222333333333333 334332 111 244555558999999976654445788888777654
No 89
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=89.07 E-value=6.4 Score=41.15 Aligned_cols=126 Identities=16% Similarity=0.242 Sum_probs=72.6
Q ss_pred ChhcHHHHHhcccccCC--CEEEEcCC-CChhHHHHHHHHHhccCCCceEEEE-ecCHHHHhcHHHHHhcCCeeEEecCc
Q 010627 186 TEKDKEDILKWGIPNQI--DMIALSFV-RKGSDLVGVRKLLGGHAKNILLMSK-VENQEGVANFDDILANSDAFMVARGD 261 (505)
Q Consensus 186 te~D~~di~~~al~~g~--d~V~~sfV-~sa~dv~~v~~~l~~~~~~~~Iiak-IEt~~av~nldeI~~~sDgImIaRgD 261 (505)
++++.+-+ ...+++|+ |.|.+--. -.-+.+.++-+.+++.-.++.||++ +-|++...++.+ .-+|++.++=|.
T Consensus 95 ~~~~~~~~-~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~--aGad~i~vg~~~ 171 (326)
T PRK05458 95 KDDEYDFV-DQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELEN--AGADATKVGIGP 171 (326)
T ss_pred CHHHHHHH-HHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHH--cCcCEEEECCCC
Confidence 45555565 55677754 99988211 1123344444445544456889997 999888876665 247999885211
Q ss_pred ccC--c---CCchhHHHHHHHHHHHH-HHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 262 LGM--E---IPIEKIFLAQKVMIYKC-NIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 262 Lg~--e---~~~~~v~~~qk~Ii~~~-~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
=.. + .+. ..+.+|-..+..| ....+|+|-...+- + -.|+..++..|+|++|+.
T Consensus 172 G~~~~t~~~~g~-~~~~w~l~ai~~~~~~~~ipVIAdGGI~---------~---~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 172 GKVCITKIKTGF-GTGGWQLAALRWCAKAARKPIIADGGIR---------T---HGDIAKSIRFGATMVMIG 230 (326)
T ss_pred CcccccccccCC-CCCccHHHHHHHHHHHcCCCEEEeCCCC---------C---HHHHHHHHHhCCCEEEec
Confidence 111 0 011 1222232223333 33468988644433 2 368899999999999996
No 90
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=89.05 E-value=18 Score=35.36 Aligned_cols=194 Identities=20% Similarity=0.191 Sum_probs=113.9
Q ss_pred CChhcHHHHHhcccccCCCEEEEc-CCCChhHHHHHHHHHhccCCCceEEEEec-CHHHHhc-HHHHHhc-CCeeEE--e
Q 010627 185 LTEKDKEDILKWGIPNQIDMIALS-FVRKGSDLVGVRKLLGGHAKNILLMSKVE-NQEGVAN-FDDILAN-SDAFMV--A 258 (505)
Q Consensus 185 lte~D~~di~~~al~~g~d~V~~s-fV~sa~dv~~v~~~l~~~~~~~~IiakIE-t~~av~n-ldeI~~~-sDgImI--a 258 (505)
++..++..+.+...+.|+|.|=+. ..-+.++.+.++.+..... +..+.+..- ....++. ++.+... .|.+.+ .
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~~~ 89 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALP-NARLQALCRANEEDIERAVEAAKEAGIDIIRIFIS 89 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHH-SSEEEEEEESCHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhc-ccccceeeeehHHHHHHHHHhhHhccCCEEEecCc
Confidence 577777777677778999999888 4566777777776654332 234433332 2223333 2222222 464444 4
Q ss_pred cCcccCc----CCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHH-cCCceeeecccCCCC
Q 010627 259 RGDLGME----IPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVL-DGTDCVMLSGETAAG 333 (505)
Q Consensus 259 RgDLg~e----~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~-~G~D~imLs~Eta~G 333 (505)
-.|+-.. ...++.......+++.++++|..+.+... .....+.+++.+++..+. .|+|.+.| .+|.=.
T Consensus 90 ~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~g~~~i~l-~Dt~G~ 162 (237)
T PF00682_consen 90 VSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCE------DASRTDPEELLELAEALAEAGADIIYL-ADTVGI 162 (237)
T ss_dssp TSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEET------TTGGSSHHHHHHHHHHHHHHT-SEEEE-EETTS-
T ss_pred ccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcc------ccccccHHHHHHHHHHHHHcCCeEEEe-eCccCC
Confidence 4442111 22345566668889999999999966432 334667788888888665 49999999 588888
Q ss_pred CCHHHHHHHHHHHHHHHhc-ccCchhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcCCcEEEEEcCCc
Q 010627 334 AYPEVAVRTMAQICVEAES-TLDYGDVFKRVMQHSPVPMSPLESLASSAVRTANSARATLILVLTRGG 400 (505)
Q Consensus 334 ~yP~~~V~~m~~i~~~aE~-~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG 400 (505)
-.|.++-+.++.+-++.-+ .+.+. .+ + .-.+|.+...+|.+.+|+. |=.|-.|
T Consensus 163 ~~P~~v~~lv~~~~~~~~~~~l~~H--~H----------n-d~Gla~An~laA~~aGa~~-id~t~~G 216 (237)
T PF00682_consen 163 MTPEDVAELVRALREALPDIPLGFH--AH----------N-DLGLAVANALAALEAGADR-IDGTLGG 216 (237)
T ss_dssp S-HHHHHHHHHHHHHHSTTSEEEEE--EB----------B-TTS-HHHHHHHHHHTT-SE-EEEBGGG
T ss_pred cCHHHHHHHHHHHHHhccCCeEEEE--ec----------C-CccchhHHHHHHHHcCCCE-EEccCcc
Confidence 8898888887777655442 11111 11 0 1124566677788889995 4444433
No 91
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=89.04 E-value=14 Score=37.27 Aligned_cols=98 Identities=12% Similarity=0.146 Sum_probs=62.6
Q ss_pred CCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHH----------hcHHHHHhc-
Q 010627 183 PTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGV----------ANFDDILAN- 251 (505)
Q Consensus 183 ~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av----------~nldeI~~~- 251 (505)
|..+..|.+.+.+.+++.|+|.|+++ +.-+...+..+ +.++.++.+|++.-.+ ...++.++.
T Consensus 34 p~~~~~d~~~~~~~a~~~~~~av~v~----~~~~~~~~~~~---~~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~G 106 (267)
T PRK07226 34 PIDGLVDIRDTVNKVAEGGADAVLMH----KGLARHGHRGY---GRDVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLG 106 (267)
T ss_pred CCcCcCCHHHHHHHHHhcCCCEEEeC----HhHHhhhcccc---CCCCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcC
Confidence 44477777777688999999999998 34444444333 3356788888843222 124555543
Q ss_pred CCeeEEe--cCcccCcCCchhHHHHHHHHHHHHHHcCCCeEE
Q 010627 252 SDAFMVA--RGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVT 291 (505)
Q Consensus 252 sDgImIa--RgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ 291 (505)
+|++-+- -|++ ...++...-+++.+.|+++|.|+++
T Consensus 107 ad~v~~~~~~g~~----~~~~~~~~~~~v~~~~~~~g~pl~v 144 (267)
T PRK07226 107 ADAVSVHVNVGSE----TEAEMLEDLGEVAEECEEWGMPLLA 144 (267)
T ss_pred CCEEEEEEecCCh----hHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 5655442 1222 1345666778899999999999876
No 92
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=88.94 E-value=2.7 Score=45.32 Aligned_cols=322 Identities=19% Similarity=0.188 Sum_probs=160.0
Q ss_pred CCCCCCCCcccccCCCeEEEEecCCCCCCHHHHHHHHHhCCc-EEEEecCCCCH-----HHHHHHHHHHHHHHHHcCCee
Q 010627 1 MDANCGVSTAIEKKPKTKIVCTLGPASRSVPMIEKLLKAGMN-VARFNFSHGSH-----EYHQETLNNLRTAMVNTGILC 74 (505)
Q Consensus 1 ~~~~~~~~~~~~~~r~tkIi~TiGp~~~~~~~i~~li~~G~~-~~RlN~shg~~-----~~~~~~i~~ir~~~~~~~~~v 74 (505)
+|.|+|++.. .=.-.++|-+++ ..|+.|++.|.. +. =+||-.. ++...+-.-....++.++.+|
T Consensus 24 vD~NvPi~~g-~I~Dd~RI~~~l-------pTI~~L~~~gak~vv--l~SHlGRP~g~~~~~~SL~~va~~L~~lL~~~V 93 (417)
T PTZ00005 24 VDFNVPIKEG-VIKDATRIKATL-------PTIKYLLEQGAKSVV--LMSHLGRPDGRRVEKYSLKPVVPKLEELLGKKV 93 (417)
T ss_pred ecCCCCCcCC-cCCChHhHHHHH-------HHHHHHHHCCCCEEE--EEecCCCCCCCcCcccCHHHHHHHHHHHHCCCe
Confidence 4788888532 112345555554 489999999986 43 2788322 211222222333455678999
Q ss_pred EEEEecCCCeeEEeecCCCCcEEecCCCEEEEEecCCCCCCcc------EEE-ecch----hhhcccCCCCEEEEeCCeE
Q 010627 75 AVMLDTKGPEIRTGFLKDGKPIQLKQGQEITISTDYTIKGDEN------MIC-MSYK----KLAVDVQPGSVILCSDGTI 143 (505)
Q Consensus 75 ~i~~Dl~GpkiR~g~~~~~~~i~l~~G~~v~l~~~~~~~~~~~------~i~-v~~~----~~~~~v~~Gd~I~idDG~i 143 (505)
...-|.-|++.+- ..-.|+.|+.+.|-.-.-..+.+. ... -|.+ .|.+.+.+.-.||++|.
T Consensus 94 ~fv~d~~g~~~~~------~i~~l~~GeVlLLENvRF~~~Ee~~~~~~~~~~~~~d~~~~~~fa~~LA~l~DiyVNDA-- 165 (417)
T PTZ00005 94 TFLNDCVGPEVEE------ACANAKNGSVILLENLRFHIEEEGKGVDANGNKVKADKEEVKKFRKSLTKLGDIYVNDA-- 165 (417)
T ss_pred EECCCCCCHHHHH------HHHcCCCCCEEEEeccccccccccccccccccccCCCHHHHHHHHHHHHhhCCEEEecc--
Confidence 8888999988651 011356666555532110011110 000 1122 36666655545888883
Q ss_pred EEEEEEEeeeCCeEEEEEeeCceecCCCCcccCCccccCCCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHH
Q 010627 144 SFTVLECNVKAGLVKCRCENSAMLGERKNVNLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLL 223 (505)
Q Consensus 144 ~l~V~~v~~~~~~i~~~v~~gG~l~s~Kgvnlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l 223 (505)
|-+- ....-++. | +|. | . ... .+.+ .+++..+.+.+
T Consensus 166 -Fg~a--HR~haS~~-------------g--i~~-----~--~----s~a-G~lm--------------ekEl~~L~~~~ 201 (417)
T PTZ00005 166 -FGTA--HRAHSSMV-------------G--VDL-----P--V----KVA-GFLM--------------KKELDYFSKAL 201 (417)
T ss_pred -hhhh--hhhccccc-------------c--cCC-----c--c----chh-hHHH--------------HHHHHHHHHHh
Confidence 2221 00000000 0 010 0 0 011 1111 34566666666
Q ss_pred hccCCC-ceEE--EEecCHHHHhcHHHHHhcCCeeEEecC--------cccCcCCc----hhHHHHHHHHHHHHHHcCCC
Q 010627 224 GGHAKN-ILLM--SKVENQEGVANFDDILANSDAFMVARG--------DLGMEIPI----EKIFLAQKVMIYKCNIQGKP 288 (505)
Q Consensus 224 ~~~~~~-~~Ii--akIEt~~av~nldeI~~~sDgImIaRg--------DLg~e~~~----~~v~~~qk~Ii~~~~~~gkp 288 (505)
..-.+. +.|+ ||+.+.-++ ++.++..+|.|++|-| .-|.++|- ++....-++|++.|...|++
T Consensus 202 ~~p~rP~vaIlGGaKvsdKi~v--l~~Ll~k~D~iligG~ma~tFL~A~~G~~iG~sl~E~~~i~~a~~il~~a~~~~~~ 279 (417)
T PTZ00005 202 ENPQRPFLAILGGAKVADKIQL--IKNLLDKVDEMIIGGGMAFTFKKVLDNMPIGKSLFDEEGAKIVKEIMEKAKEKNVK 279 (417)
T ss_pred cCCCCceEEEEcCccHHhHHHH--HHHHHHhcCEEEECcHHHHHHHHHhCCCccCccccChhhHHHHHHHHHHHHhcCCE
Confidence 422111 2233 678765555 7778888999998632 23344443 34555667999999999998
Q ss_pred eEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCce-ee-ecccCCCCCC----HHHHHHHHHHHHHHHhcccCchh--hH
Q 010627 289 VVTATQMLESMIKSPRPTRAEATDVANAVLDGTDC-VM-LSGETAAGAY----PEVAVRTMAQICVEAESTLDYGD--VF 360 (505)
Q Consensus 289 vi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~-im-Ls~Eta~G~y----P~~~V~~m~~i~~~aE~~~~~~~--~~ 360 (505)
+++-+-.. +. +-+..+... +. .+.+...|.+ =-++++...+++..|...+|.-. .|
T Consensus 280 I~lPvD~~-------------v~---~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~akTV~wNGP~GvF 343 (417)
T PTZ00005 280 IHLPVDFV-------------CA---DKFDNNANTKVVTDKEGIPDGWMGLDAGPKSIEEFAEAILRAKTIVWNGPQGVF 343 (417)
T ss_pred EeCCceEE-------------Ee---cccCCCCCeEEecCccCCCCCCEEeccCHHHHHHHHHHHhhCCEEEEECCCccc
Confidence 87533222 10 000011111 11 1111111211 12788999999999998887542 23
Q ss_pred HhhhhCCCCCCCchhhHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCC
Q 010627 361 KRVMQHSPVPMSPLESLASSAVRTANSARATLILVLTRGGSTAKLVAKYRP 411 (505)
Q Consensus 361 ~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~ls~~RP 411 (505)
+ .+.-..-+.+++.+...+. +.++. .+--.|.|+..+.++--
T Consensus 344 E-----~~~F~~GT~~i~~aia~~t-~~~a~---sivGGGdt~aAi~~~g~ 385 (417)
T PTZ00005 344 E-----MPNFAKGSIAMLDAVVKAT-EKGAI---TIVGGGDTASLVEKTGA 385 (417)
T ss_pred c-----CCcchHHHHHHHHHHHHhc-cCCCE---EEEeCcHHHHHHHHcCC
Confidence 2 1111223455666544322 22333 22345788888777643
No 93
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C.
Probab=88.90 E-value=0.85 Score=49.82 Aligned_cols=90 Identities=20% Similarity=0.240 Sum_probs=65.0
Q ss_pred cCCCEEEEcCCCChhHHHHHHHHHh----------------cc-----CCCceEEEEecCHHHHhcHHHHHhc----C--
Q 010627 200 NQIDMIALSFVRKGSDLVGVRKLLG----------------GH-----AKNILLMSKVENQEGVANFDDILAN----S-- 252 (505)
Q Consensus 200 ~g~d~V~~sfV~sa~dv~~v~~~l~----------------~~-----~~~~~IiakIEt~~av~nldeI~~~----s-- 252 (505)
..+-.|++||++|++++..+.++.. +. -..+.||..||...++-|+++|+.. -
T Consensus 119 ~pIfEVILPMtts~~~l~~v~~~y~~~v~~k~~~~~~~~~~E~~g~~~p~~I~vIPL~Ed~~~~l~~~~Il~~y~~~~g~ 198 (491)
T PF14010_consen 119 QPIFEVILPMTTSAEELIRVYRYYRKFVAGKQEKLYDITVKEWIGEFDPEEIEVIPLFEDVDSLLNADEILEEYLKDKGR 198 (491)
T ss_dssp -S-SEEEESS--SHHHHHHHHHHHHHHHH--------HHHHH-SS---TTSSEEEEEE-SHHHHHTHHHHHHHHHHHTT-
T ss_pred cchheeeccccCCHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhccccCcCcceEeeccccHHHHhcHHHHHHHHHHHhcC
Confidence 4677899999999999999876542 11 1358999999999999999999984 1
Q ss_pred C----eeEEecCcccCcCCch----hHHHHHHHHHHHHHHcCCCe
Q 010627 253 D----AFMVARGDLGMEIPIE----KIFLAQKVMIYKCNIQGKPV 289 (505)
Q Consensus 253 D----gImIaRgDLg~e~~~~----~v~~~qk~Ii~~~~~~gkpv 289 (505)
+ -+|+||.|=++..|.- -+-.+-.++-+...+.|.|+
T Consensus 199 ~~~y~RVFLarSDpAmnyG~iaa~L~~k~AL~~l~~~~~e~gi~I 243 (491)
T PF14010_consen 199 DPEYQRVFLARSDPAMNYGHIAAVLANKYALSKLYELEEELGIPI 243 (491)
T ss_dssp --SEEEEEEESHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-EE
T ss_pred CchheeeeeccCchhhccchHHHHHHHHHHHHHHHHHHHhcCCce
Confidence 2 7999999999999873 33345566677778899997
No 94
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=88.89 E-value=20 Score=37.88 Aligned_cols=156 Identities=13% Similarity=0.090 Sum_probs=97.6
Q ss_pred CCChhcHHHHHhcccccCCCEEEEcCCC-ChhHHHHHHHHHhccCCCceEEEEe-cCHHHHhcHHHHHhc-CCeeEE--e
Q 010627 184 TLTEKDKEDILKWGIPNQIDMIALSFVR-KGSDLVGVRKLLGGHAKNILLMSKV-ENQEGVANFDDILAN-SDAFMV--A 258 (505)
Q Consensus 184 ~lte~D~~di~~~al~~g~d~V~~sfV~-sa~dv~~v~~~l~~~~~~~~IiakI-Et~~av~nldeI~~~-sDgImI--a 258 (505)
.++..++..|.+...+.|++.|=+.|-. +..+.+.++.+. +.+.+..+.+-. -+.+.+ +..++. .|.|.+ +
T Consensus 19 ~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~-~~~~~~~i~~~~r~~~~di---~~a~~~g~~~i~i~~~ 94 (365)
T TIGR02660 19 AFTAAEKLAIARALDEAGVDELEVGIPAMGEEERAVIRAIV-ALGLPARLMAWCRARDADI---EAAARCGVDAVHISIP 94 (365)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHH-HcCCCcEEEEEcCCCHHHH---HHHHcCCcCEEEEEEc
Confidence 3577777777677778999999775544 333444555443 334445666654 333333 333332 364444 3
Q ss_pred cCcccCc----CCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHH-HHHcCCceeeecccCCCC
Q 010627 259 RGDLGME----IPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSGETAAG 333 (505)
Q Consensus 259 RgDLg~e----~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~n-av~~G~D~imLs~Eta~G 333 (505)
-.|+-.+ ...++.....+..++.++++|..+-+. +...++-+...+.+++. +...|+|.|.| .+|.=.
T Consensus 95 ~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~------~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l-~DT~G~ 167 (365)
T TIGR02660 95 VSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVG------GEDASRADPDFLVELAEVAAEAGADRFRF-ADTVGI 167 (365)
T ss_pred cCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEe------ecCCCCCCHHHHHHHHHHHHHcCcCEEEE-cccCCC
Confidence 3332111 123444455567889999999887653 22445556666666666 45579999999 688888
Q ss_pred CCHHHHHHHHHHHHHHH
Q 010627 334 AYPEVAVRTMAQICVEA 350 (505)
Q Consensus 334 ~yP~~~V~~m~~i~~~a 350 (505)
..|.++-+.++.+....
T Consensus 168 ~~P~~v~~lv~~l~~~~ 184 (365)
T TIGR02660 168 LDPFSTYELVRALRQAV 184 (365)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999988887654
No 95
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=88.74 E-value=5.6 Score=41.47 Aligned_cols=146 Identities=16% Similarity=0.202 Sum_probs=78.1
Q ss_pred cHHHHHhcccccCCCEEEEcCCC--C-----h----hHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc-----C
Q 010627 189 DKEDILKWGIPNQIDMIALSFVR--K-----G----SDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN-----S 252 (505)
Q Consensus 189 D~~di~~~al~~g~d~V~~sfV~--s-----a----~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-----s 252 (505)
+..++.+.+.+.|+|+|-+.+-. . . +.+.++-+.+.+ ..+++|++|+ ++ .+.++.++++. +
T Consensus 115 e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~-~~~iPV~vKl-~p-~~~~~~~~a~~l~~~G~ 191 (334)
T PRK07565 115 GWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKS-AVSIPVAVKL-SP-YFSNLANMAKRLDAAGA 191 (334)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHh-ccCCcEEEEe-CC-CchhHHHHHHHHHHcCC
Confidence 33344355667799999884311 1 1 112222222322 2357899997 33 23344455442 5
Q ss_pred CeeEEecCcccCcCCc--------------hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHH
Q 010627 253 DAFMVARGDLGMEIPI--------------EKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVL 318 (505)
Q Consensus 253 DgImIaRgDLg~e~~~--------------~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~ 318 (505)
|||.+.-.=.+..+.+ .-.+...+.+-+.....+.|+|-..-+- -..|+..++.
T Consensus 192 dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~------------s~~Da~e~l~ 259 (334)
T PRK07565 192 DGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGVH------------DAEDVIKMLL 259 (334)
T ss_pred CeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCC------------CHHHHHHHHH
Confidence 8887632112221111 1234455555555555678987654433 2467888889
Q ss_pred cCCceeeecccCCCCCCHHHHHHHHHHHHHHHhccc
Q 010627 319 DGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTL 354 (505)
Q Consensus 319 ~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~ 354 (505)
.|||++++...--. +-| +.+.+|+++-+.++
T Consensus 260 aGA~~V~v~t~~~~-~g~----~~~~~i~~~L~~~l 290 (334)
T PRK07565 260 AGADVVMIASALLR-HGP----DYIGTILRGLEDWM 290 (334)
T ss_pred cCCCceeeehHHhh-hCc----HHHHHHHHHHHHHH
Confidence 99999999744332 113 45666666666543
No 96
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=88.62 E-value=7.2 Score=39.53 Aligned_cols=117 Identities=8% Similarity=0.020 Sum_probs=75.2
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCc-hhHHH
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPI-EKIFL 273 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~-~~v~~ 273 (505)
+.+.+.|+|+|++|-.- .++..++.+.+++.|-+.-.+..=.| ..+.+..|++.++|.+-.=+-.|+ .|. ..++.
T Consensus 113 ~~~~~aGvdgviipDLP-~ee~~~~~~~~~~~gi~~I~lv~PtT--~~eri~~i~~~a~gFIY~vS~~Gv-TG~~~~~~~ 188 (263)
T CHL00200 113 KKISQAGVKGLIIPDLP-YEESDYLISVCNLYNIELILLIAPTS--SKSRIQKIARAAPGCIYLVSTTGV-TGLKTELDK 188 (263)
T ss_pred HHHHHcCCeEEEecCCC-HHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHhCCCcEEEEcCCCC-CCCCccccH
Confidence 67788999999999875 57888888888887755444443334 367899999999965543111221 111 24444
Q ss_pred HHHHHHHHHHHc-CCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 274 AQKVMIYKCNIQ-GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 274 ~qk~Ii~~~~~~-gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
-.+..++..+++ ++|+.+-- ..-++. ++......|+|++...
T Consensus 189 ~~~~~i~~ir~~t~~Pi~vGF---------GI~~~e---~~~~~~~~GADGvVVG 231 (263)
T CHL00200 189 KLKKLIETIKKMTNKPIILGF---------GISTSE---QIKQIKGWNINGIVIG 231 (263)
T ss_pred HHHHHHHHHHHhcCCCEEEEC---------CcCCHH---HHHHHHhcCCCEEEEC
Confidence 455666666654 88887632 233333 4455666799999884
No 97
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=88.32 E-value=7.4 Score=37.07 Aligned_cols=131 Identities=7% Similarity=0.054 Sum_probs=75.5
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcc---cCcCCchhH
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDL---GMEIPIEKI 271 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDL---g~e~~~~~v 271 (505)
+.+.+.|+|+|.++--.+ ++.....+.++..+.++.+. ++.....+.+.++...+|++.+..-+- |-..+...+
T Consensus 73 ~~~~~~gadgv~vh~~~~-~~~~~~~~~~~~~g~~~~~~--~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~ 149 (210)
T TIGR01163 73 EDFAEAGADIITVHPEAS-EHIHRLLQLIKDLGAKAGIV--LNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTL 149 (210)
T ss_pred HHHHHcCCCEEEEccCCc-hhHHHHHHHHHHcCCcEEEE--ECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccccHHHH
Confidence 566789999998876444 45555556666566554443 444345777888877789988754322 212222222
Q ss_pred HHHHHHHHHHHHHc--CCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHH
Q 010627 272 FLAQKVMIYKCNIQ--GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRT 342 (505)
Q Consensus 272 ~~~qk~Ii~~~~~~--gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~ 342 (505)
. .-+++.+..++. ++|+.++.-+ + ..++..++..|+|++.++..-..-.-|.++++.
T Consensus 150 ~-~i~~i~~~~~~~~~~~~i~v~GGI----------~---~env~~l~~~gad~iivgsai~~~~d~~~~~~~ 208 (210)
T TIGR01163 150 E-KIREVRKMIDENGLSILIEVDGGV----------N---DDNARELAEAGADILVAGSAIFGADDYKEVIRS 208 (210)
T ss_pred H-HHHHHHHHHHhcCCCceEEEECCc----------C---HHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHH
Confidence 2 223333334433 3577665431 1 144677788899999997555433456666553
No 98
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=88.24 E-value=5.1 Score=38.94 Aligned_cols=118 Identities=19% Similarity=0.172 Sum_probs=65.9
Q ss_pred HHHHHhcccccCCCEEEEc--CCCChh--HHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccC-
Q 010627 190 KEDILKWGIPNQIDMIALS--FVRKGS--DLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGM- 264 (505)
Q Consensus 190 ~~di~~~al~~g~d~V~~s--fV~sa~--dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~- 264 (505)
.+.+ +.+.+.|+|+|.+- ..+.++ .+.++.+.+.+.+ ++.+++.+.|++-...+.+ .-.|.+.+...++..
T Consensus 82 ~~~~-~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~t~~ea~~a~~--~G~d~i~~~~~g~t~~ 157 (219)
T cd04729 82 IEEV-DALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADISTLEEALNAAK--LGFDIIGTTLSGYTEE 157 (219)
T ss_pred HHHH-HHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECCCHHHHHHHHH--cCCCEEEccCcccccc
Confidence 3466 77789999987662 222232 6666666666666 6788887776654322221 125877653222211
Q ss_pred --cCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 265 --EIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 265 --e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
......+ ..-+++. ...+.|++.+..+- ...|+..++..|+|++++.
T Consensus 158 ~~~~~~~~~-~~l~~i~---~~~~ipvia~GGI~------------~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 158 TAKTEDPDF-ELLKELR---KALGIPVIAEGRIN------------SPEQAAKALELGADAVVVG 206 (219)
T ss_pred ccCCCCCCH-HHHHHHH---HhcCCCEEEeCCCC------------CHHHHHHHHHCCCCEEEEc
Confidence 1111111 2222222 22379998755432 2356778888999999985
No 99
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []. This reaction is harnessed by C4 plants to capture and concentrate carbon dioxide into the photosynthetic bundle sheath cells. It also plays a key role in the nitrogen fixation pathway in legume root nodules: here it functions in concert with glutamine, glutamate and asparagine synthetases and aspartate amido transferase, to synthesise aspartate and asparagine, the major nitrogen transport compounds in various amine-transporting plant species []. PEPCase also plays an antipleurotic role in bacteria and plant cells, supplying oxaloacetate to the TCA cycle, which requires continuous input of C4 molecules in order to replenish the intermediates removed for amino acid biosynthesis []. The C terminus of the enzyme contains the active site that includes a conserved lysine residue, involved in substrate binding, and other conserved residues important for the catalytic mechanism []. Based on sequence similarity, PEPCase enzymes can be grouped into two distinct families, one found primarily in bacteria and plants, and another found primarily in archaea.; GO: 0008964 phosphoenolpyruvate carboxylase activity, 0006099 tricarboxylic acid cycle, 0015977 carbon fixation; PDB: 1JQO_A 1QB4_A 1JQN_A 1FIY_A.
Probab=88.00 E-value=1.5 Score=51.15 Aligned_cols=90 Identities=17% Similarity=0.186 Sum_probs=68.9
Q ss_pred CCEEEEcCCCChhHHHHHHHHHhccCC--------CceEEEEecCHHHHhcHHHHHhcC----------------CeeEE
Q 010627 202 IDMIALSFVRKGSDLVGVRKLLGGHAK--------NILLMSKVENQEGVANFDDILANS----------------DAFMV 257 (505)
Q Consensus 202 ~d~V~~sfV~sa~dv~~v~~~l~~~~~--------~~~IiakIEt~~av~nldeI~~~s----------------DgImI 257 (505)
+.-.++|+.+++.||.++--+.++.|- .+.|+...||.+.++|..+|++.- --||+
T Consensus 364 ~~~yIISmt~~~sdvL~v~~L~k~~gl~~~~~~~~~l~vvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~~~~QeVMl 443 (794)
T PF00311_consen 364 IGRYIISMTESASDVLEVLLLAKEAGLADGGDGGCRLDVVPLFETIDDLENAPDIMEELLSNPAYRAHLKARGNRQEVML 443 (794)
T ss_dssp EEEEEECT--SCHHHHHHHHHHHCTT---SS---S---EEEEE-SHHHHHCHHHHHHHHCCSHHHHHHCTT---EEEEEE
T ss_pred HHHheeeCCCChHHHHHHHHHHHHhCCCcccccccccCCCCCCCCHHHHHhHHHHHHHHHcCHHHHHHHhcCcceEEEEe
Confidence 335689999999999999888877653 378999999999999999999841 17999
Q ss_pred ecCcccCcCCc----hhHHHHHHHHHHHHHHcCCCeEE
Q 010627 258 ARGDLGMEIPI----EKIFLAQKVMIYKCNIQGKPVVT 291 (505)
Q Consensus 258 aRgDLg~e~~~----~~v~~~qk~Ii~~~~~~gkpvi~ 291 (505)
|-.|=+=+-|. -.+..+|+++.+.|+++|..+.+
T Consensus 444 GYSDS~KDgG~laa~w~ly~Aq~~L~~v~~~~gV~l~~ 481 (794)
T PF00311_consen 444 GYSDSNKDGGYLAANWALYKAQEALVAVARKHGVKLRF 481 (794)
T ss_dssp ECCCHHHHC-HHHHHHHHHHHHHHHHHHHHCCT-EEEE
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 98887777776 38899999999999999998754
No 100
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=87.99 E-value=6.4 Score=42.18 Aligned_cols=131 Identities=13% Similarity=0.078 Sum_probs=83.0
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEec-Cccc-CcCCchhHH
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVAR-GDLG-MEIPIEKIF 272 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaR-gDLg-~e~~~~~v~ 272 (505)
+.+.++|+|++.+...-+.+.+.++.+.+++.|..+.+ -.+.....++.++++....|.+.+.+ -|=+ ..-+++++
T Consensus 244 ~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~GikvgV-D~lnp~tp~e~i~~l~~~vD~Vllht~vdp~~~~~~~~kI- 321 (391)
T PRK13307 244 RMAADATADAVVISGLAPISTIEKAIHEAQKTGIYSIL-DMLNVEDPVKLLESLKVKPDVVELHRGIDEEGTEHAWGNI- 321 (391)
T ss_pred HHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEE-EEcCCCCHHHHHHHhhCCCCEEEEccccCCCcccchHHHH-
Confidence 55678999999999977777899888888887744333 13333335566777766679888876 2222 21122222
Q ss_pred HHHHHHHHHHHH--cCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHH
Q 010627 273 LAQKVMIYKCNI--QGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQIC 347 (505)
Q Consensus 273 ~~qk~Ii~~~~~--~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~ 347 (505)
+..++ .+.++.++.-+ + ..++..++..|+|.+.+..--.--+.|.++++.+.+.+
T Consensus 322 -------~~ikk~~~~~~I~VdGGI----------~---~eti~~l~~aGADivVVGsaIf~a~Dp~~aak~l~~~i 378 (391)
T PRK13307 322 -------KEIKKAGGKILVAVAGGV----------R---VENVEEALKAGADILVVGRAITKSKDVRRAAEDFLNKL 378 (391)
T ss_pred -------HHHHHhCCCCcEEEECCc----------C---HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHhh
Confidence 22223 34566665321 1 23466777889999888644333457999999887765
No 101
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=87.92 E-value=7 Score=39.52 Aligned_cols=127 Identities=12% Similarity=0.126 Sum_probs=71.8
Q ss_pred hcHHHHHhcccccCCCEEEEcCC-----------CChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc-----
Q 010627 188 KDKEDILKWGIPNQIDMIALSFV-----------RKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN----- 251 (505)
Q Consensus 188 ~D~~di~~~al~~g~d~V~~sfV-----------~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~----- 251 (505)
.|..+..+.+.+.|+|+|-+.+- ++++.+.++-+.+++. .+..|++|+-.-...++..++++.
T Consensus 111 ~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~-~~~pv~vKl~~~~~~~~~~~~a~~l~~~G 189 (289)
T cd02810 111 EDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAA-VDIPLLVKLSPYFDLEDIVELAKAAERAG 189 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHc-cCCCEEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 44444447777889999887542 2445555555555432 257899998654333344455442
Q ss_pred CCeeEEecCcccC--c------------CCc---hhHHHHHHHHHHHHHHc--CCCeEEehhhhHhhhcCCCCChHHHHH
Q 010627 252 SDAFMVARGDLGM--E------------IPI---EKIFLAQKVMIYKCNIQ--GKPVVTATQMLESMIKSPRPTRAEATD 312 (505)
Q Consensus 252 sDgImIaRgDLg~--e------------~~~---~~v~~~qk~Ii~~~~~~--gkpvi~ATqmLeSM~~~~~ptraEv~D 312 (505)
+|+|.+.-+-.+. + -++ .-.+...+.+-+..... +.|+|....+- ...|
T Consensus 190 ad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~------------~~~d 257 (289)
T cd02810 190 ADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGID------------SGED 257 (289)
T ss_pred CCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCC------------CHHH
Confidence 5888874221110 0 011 11222334444444445 68988655433 2356
Q ss_pred HHHHHHcCCceeeec
Q 010627 313 VANAVLDGTDCVMLS 327 (505)
Q Consensus 313 v~nav~~G~D~imLs 327 (505)
+..++..|+|++|+.
T Consensus 258 a~~~l~~GAd~V~vg 272 (289)
T cd02810 258 VLEMLMAGASAVQVA 272 (289)
T ss_pred HHHHHHcCccHheEc
Confidence 788888999999996
No 102
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=87.89 E-value=4.5 Score=39.92 Aligned_cols=136 Identities=7% Similarity=-0.037 Sum_probs=81.3
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHH--hcCCeeEEecCcccCcCCchhH-
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDIL--ANSDAFMVARGDLGMEIPIEKI- 271 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~--~~sDgImIaRgDLg~e~~~~~v- 271 (505)
+...+.|+|++.+.+-.+...+.+..+.+++.|..+.|--.-+| .++.+.+++ ...|.|++ ++++-|....
T Consensus 82 ~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t--~~e~l~~~l~~~~vD~Vl~----m~v~pG~~gq~ 155 (228)
T PTZ00170 82 DDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKT--PVEVLFPLIDTDLVDMVLV----MTVEPGFGGQS 155 (228)
T ss_pred HHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCC--CHHHHHHHHccchhhhHHh----hhcccCCCCcE
Confidence 55678899999887654443377887888887766555445454 688889998 66788875 5555444211
Q ss_pred --HHHHHHHHHHHHHcC-CCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHH
Q 010627 272 --FLAQKVMIYKCNIQG-KPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICV 348 (505)
Q Consensus 272 --~~~qk~Ii~~~~~~g-kpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~ 348 (505)
+..-.++-+.....+ ..+.++. -=+. ..+..++..|+|.+++..--.-...|.++++.+.+.+.
T Consensus 156 ~~~~~~~ki~~~~~~~~~~~I~VdG----------GI~~---~ti~~~~~aGad~iVvGsaI~~a~d~~~~~~~i~~~~~ 222 (228)
T PTZ00170 156 FMHDMMPKVRELRKRYPHLNIQVDG----------GINL---ETIDIAADAGANVIVAGSSIFKAKDRKQAIELLRESVQ 222 (228)
T ss_pred ecHHHHHHHHHHHHhcccCeEEECC----------CCCH---HHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHHHHH
Confidence 111222222222222 2232221 1122 24466777899999986443334579999888877654
Q ss_pred H
Q 010627 349 E 349 (505)
Q Consensus 349 ~ 349 (505)
+
T Consensus 223 ~ 223 (228)
T PTZ00170 223 K 223 (228)
T ss_pred H
Confidence 3
No 103
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=87.77 E-value=9.6 Score=40.41 Aligned_cols=90 Identities=16% Similarity=0.206 Sum_probs=65.1
Q ss_pred hHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeh
Q 010627 214 SDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTAT 293 (505)
Q Consensus 214 ~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~AT 293 (505)
+....++++.++. .+.+++-+-+...++-+ .+++|.+.||-+++.. ..++.++.+.||||++.|
T Consensus 169 e~l~~L~~~~~~~--Gl~~~t~v~d~~~~~~l---~~~vd~lkI~s~~~~n-----------~~LL~~~a~~gkPVilk~ 232 (360)
T PRK12595 169 EGLKILKQVADEY--GLAVISEIVNPADVEVA---LDYVDVIQIGARNMQN-----------FELLKAAGRVNKPVLLKR 232 (360)
T ss_pred HHHHHHHHHHHHc--CCCEEEeeCCHHHHHHH---HHhCCeEEECcccccC-----------HHHHHHHHccCCcEEEeC
Confidence 5566777777654 47788877776666554 4459999999887753 256777788999999987
Q ss_pred hhhHhhhcCCCCChHHHHHHHHHHH-cCCceeeec
Q 010627 294 QMLESMIKSPRPTRAEATDVANAVL-DGTDCVMLS 327 (505)
Q Consensus 294 qmLeSM~~~~~ptraEv~Dv~nav~-~G~D~imLs 327 (505)
.|. +|-.|+...++.+. .|.+-++|.
T Consensus 233 G~~--------~t~~e~~~Ave~i~~~Gn~~i~L~ 259 (360)
T PRK12595 233 GLS--------ATIEEFIYAAEYIMSQGNGQIILC 259 (360)
T ss_pred CCC--------CCHHHHHHHHHHHHHCCCCCEEEE
Confidence 654 56678888787766 577667775
No 104
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=87.42 E-value=1.8 Score=41.96 Aligned_cols=132 Identities=11% Similarity=0.086 Sum_probs=73.2
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhc----HHHHHhc-----CCeeEEecCcccCc
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVAN----FDDILAN-----SDAFMVARGDLGME 265 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~n----ldeI~~~-----sDgImIaRgDLg~e 265 (505)
+.+.+.|+|+|.++.--..+.+.++.+.+++.|..+.+...-+++.+++. ++.++.. .||..+.+..
T Consensus 74 ~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~~~~---- 149 (215)
T PRK13813 74 EAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVAPATR---- 149 (215)
T ss_pred HHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEECCCc----
Confidence 44467899999999875556688888888877766666666666555543 3333332 2344322111
Q ss_pred CCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHH
Q 010627 266 IPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQ 345 (505)
Q Consensus 266 ~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~ 345 (505)
.+++..+.+ ..+.++.+.+.-+ .+ +-.++..++..|+|.+++..--.-...|.++++.|++
T Consensus 150 --~~~i~~l~~-------~~~~~~~ivdgGI-------~~---~g~~~~~~~~aGad~iV~Gr~I~~~~d~~~~~~~l~~ 210 (215)
T PRK13813 150 --PERVRYIRS-------RLGDELKIISPGI-------GA---QGGKAADAIKAGADYVIVGRSIYNAADPREAAKAINE 210 (215)
T ss_pred --chhHHHHHH-------hcCCCcEEEeCCc-------CC---CCCCHHHHHHcCCCEEEECcccCCCCCHHHHHHHHHH
Confidence 123222221 2222321111111 11 1112566777899999886443334569999999987
Q ss_pred HHHH
Q 010627 346 ICVE 349 (505)
Q Consensus 346 i~~~ 349 (505)
.+++
T Consensus 211 ~~~~ 214 (215)
T PRK13813 211 EIRG 214 (215)
T ss_pred HHhc
Confidence 6643
No 105
>PRK15452 putative protease; Provisional
Probab=87.23 E-value=3.5 Score=44.86 Aligned_cols=92 Identities=13% Similarity=0.196 Sum_probs=58.9
Q ss_pred hhcHHHHHhcccccCCCEEEEcC----------CCChhHHHHHHHHHhccCCCceEEE-EecCHHHHhcH----HHHHhc
Q 010627 187 EKDKEDILKWGIPNQIDMIALSF----------VRKGSDLVGVRKLLGGHAKNILLMS-KVENQEGVANF----DDILAN 251 (505)
Q Consensus 187 e~D~~di~~~al~~g~d~V~~sf----------V~sa~dv~~v~~~l~~~~~~~~Iia-kIEt~~av~nl----deI~~~ 251 (505)
-.+.+.+ +.|+++|+|.|.+.. --+.+|+.++.++.++.|.++.+.. .|=..+-++.+ +.+.+.
T Consensus 10 ag~~e~l-~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~ 88 (443)
T PRK15452 10 AGTLKNM-RYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAM 88 (443)
T ss_pred CCCHHHH-HHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhC
Confidence 3567788 899999999999932 1245889999888888776544321 12222334444 333333
Q ss_pred -CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHc--CCCeEEehhh
Q 010627 252 -SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQ--GKPVVTATQM 295 (505)
Q Consensus 252 -sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~--gkpvi~ATqm 295 (505)
.|||+|+ |+|+ +..+++. +.|+...||+
T Consensus 89 gvDgvIV~--d~G~--------------l~~~ke~~p~l~ih~stql 119 (443)
T PRK15452 89 KPDALIMS--DPGL--------------IMMVREHFPEMPIHLSVQA 119 (443)
T ss_pred CCCEEEEc--CHHH--------------HHHHHHhCCCCeEEEEecc
Confidence 6999995 5653 2333343 7789998986
No 106
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=87.23 E-value=20 Score=39.56 Aligned_cols=168 Identities=15% Similarity=0.168 Sum_probs=106.5
Q ss_pred CCCcccCCccccCCCCChhcHHHHHhcccccCCCEEEEcC-CCChhHHHHHHHHHhccCCCceEEEEec-CHHHHhcHHH
Q 010627 170 RKNVNLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSF-VRKGSDLVGVRKLLGGHAKNILLMSKVE-NQEGVANFDD 247 (505)
Q Consensus 170 ~Kgvnlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~sf-V~sa~dv~~v~~~l~~~~~~~~IiakIE-t~~av~nlde 247 (505)
|-|-..|+. .+|..++..|.+...+.|+|.|=+.| +.++.|.+.++.+.. ...+..+.+..- +.+.++..-+
T Consensus 10 RDG~Q~~g~-----~~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~-~~~~~~i~al~r~~~~did~a~~ 83 (494)
T TIGR00973 10 RDGEQSPGA-----SLTVEEKLQIALALERLGVDIIEAGFPVSSPGDFEAVQRIAR-TVKNPRVCGLARCVEKDIDAAAE 83 (494)
T ss_pred CccCcCCCC-----CcCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHH-hCCCCEEEEEcCCCHHhHHHHHH
Confidence 344444554 35778888886777779999997755 567888888877653 334556666654 3444433222
Q ss_pred HHhc--CCee--EEecCcccCc----CCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHH-HHH
Q 010627 248 ILAN--SDAF--MVARGDLGME----IPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVL 318 (505)
Q Consensus 248 I~~~--sDgI--mIaRgDLg~e----~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~n-av~ 318 (505)
-+.- .+.| ++.-.|+-.+ ...+++.......++.|+++|..+.+..+ ...+-....+.+++. +..
T Consensus 84 al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~E------d~~r~d~~~l~~~~~~~~~ 157 (494)
T TIGR00973 84 ALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCE------DAGRTEIPFLARIVEAAIN 157 (494)
T ss_pred hccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcC------CCCCCCHHHHHHHHHHHHH
Confidence 2211 2433 3343344322 23456677778899999999998766432 222223344555555 456
Q ss_pred cCCceeeecccCCCCCCHHHHHHHHHHHHHHH
Q 010627 319 DGTDCVMLSGETAAGAYPEVAVRTMAQICVEA 350 (505)
Q Consensus 319 ~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~a 350 (505)
.|+|.+.| .+|.=+..|-+.-+.+..+.+..
T Consensus 158 ~Ga~~i~l-~DTvG~~~P~~~~~~i~~l~~~~ 188 (494)
T TIGR00973 158 AGATTINI-PDTVGYALPAEYGNLIKGLRENV 188 (494)
T ss_pred cCCCEEEe-CCCCCCCCHHHHHHHHHHHHHhh
Confidence 79999999 69999999999988888876543
No 107
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=86.99 E-value=8.3 Score=39.53 Aligned_cols=127 Identities=13% Similarity=0.115 Sum_probs=75.7
Q ss_pred hcHHHHHhcccccCCCEEEE----cCC-----------CChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc-
Q 010627 188 KDKEDILKWGIPNQIDMIAL----SFV-----------RKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN- 251 (505)
Q Consensus 188 ~D~~di~~~al~~g~d~V~~----sfV-----------~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~- 251 (505)
.|..+..+.+.+.|+|+|-+ |.. ++++.+.++.+.+.+. .+++|++||-- .+.++.++++.
T Consensus 113 ~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~Pv~vKl~~--~~~~~~~~a~~~ 189 (299)
T cd02940 113 EDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREA-VKIPVIAKLTP--NITDIREIARAA 189 (299)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHh-cCCCeEEECCC--CchhHHHHHHHH
Confidence 44444435555568888765 222 4456666666666542 35889999952 34466666653
Q ss_pred ----CCeeEE-----ecCccc---------C--------cCCchhHHHHHHHHHHHHHHc--CCCeEEehhhhHhhhcCC
Q 010627 252 ----SDAFMV-----ARGDLG---------M--------EIPIEKIFLAQKVMIYKCNIQ--GKPVVTATQMLESMIKSP 303 (505)
Q Consensus 252 ----sDgImI-----aRgDLg---------~--------e~~~~~v~~~qk~Ii~~~~~~--gkpvi~ATqmLeSM~~~~ 303 (505)
+|||.+ +|-++- + =-|....|...+.+-+..+.. ..|+|-.+-+.
T Consensus 190 ~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~------- 262 (299)
T cd02940 190 KEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIE------- 262 (299)
T ss_pred HHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCC-------
Confidence 488874 111110 0 001123455566666666666 68888665543
Q ss_pred CCChHHHHHHHHHHHcCCceeeeccc
Q 010627 304 RPTRAEATDVANAVLDGTDCVMLSGE 329 (505)
Q Consensus 304 ~ptraEv~Dv~nav~~G~D~imLs~E 329 (505)
-..|+..++..|||++|+..-
T Consensus 263 -----~~~da~~~l~aGA~~V~i~ta 283 (299)
T cd02940 263 -----SWEDAAEFLLLGASVVQVCTA 283 (299)
T ss_pred -----CHHHHHHHHHcCCChheEcee
Confidence 346888899999999999643
No 108
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=86.98 E-value=18 Score=35.88 Aligned_cols=140 Identities=12% Similarity=0.029 Sum_probs=85.4
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEE---ecCcccCcCCchhH
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMV---ARGDLGMEIPIEKI 271 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImI---aRgDLg~e~~~~~v 271 (505)
+.-.++|+|+|.+.+=.+..+..++-+.+++.|.+..|.-+-.|+ ++.++.++...|.|+| -||-=|-.+ .
T Consensus 76 ~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~--~~~l~~~l~~vD~VLvMsV~PGf~GQ~f----i 149 (229)
T PRK09722 76 DQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETP--VESIKYYIHLLDKITVMTVDPGFAGQPF----I 149 (229)
T ss_pred HHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCC--HHHHHHHHHhcCEEEEEEEcCCCcchhc----c
Confidence 444678999998765323356777778888889888888888884 6789999999999988 333222222 2
Q ss_pred HHHHHHHHH---HHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCC--CCHHHHHHHHHHH
Q 010627 272 FLAQKVMIY---KCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAG--AYPEVAVRTMAQI 346 (505)
Q Consensus 272 ~~~qk~Ii~---~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G--~yP~~~V~~m~~i 346 (505)
+..-++|-+ ...++|..+.+. +... =+.. -+......|+|.+++.+---.| ..|.+.++.|++.
T Consensus 150 ~~~l~KI~~lr~~~~~~~~~~~Ie-------VDGG-I~~~---~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~~l~~~ 218 (229)
T PRK09722 150 PEMLDKIAELKALRERNGLEYLIE-------VDGS-CNQK---TYEKLMEAGADVFIVGTSGLFNLDEDIDEAWDIMTAQ 218 (229)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEE-------EECC-CCHH---HHHHHHHcCCCEEEEChHHHcCCCCCHHHHHHHHHHH
Confidence 222222222 223445444221 1111 1111 2345566799999885321234 3588999999887
Q ss_pred HHHHh
Q 010627 347 CVEAE 351 (505)
Q Consensus 347 ~~~aE 351 (505)
..++.
T Consensus 219 ~~~~~ 223 (229)
T PRK09722 219 IEAAT 223 (229)
T ss_pred HHHhh
Confidence 65553
No 109
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=86.94 E-value=4.8 Score=39.66 Aligned_cols=153 Identities=19% Similarity=0.199 Sum_probs=96.8
Q ss_pred CCCChh-cHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCH-----HH-----HhcHHHHHhc
Q 010627 183 PTLTEK-DKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQ-----EG-----VANFDDILAN 251 (505)
Q Consensus 183 ~~lte~-D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~-----~a-----v~nldeI~~~ 251 (505)
|..+.. |.+.+.+.+++.+++.|+++ +.-+..+++.+...+..+.++.....- .- +...++.++.
T Consensus 13 ~~~~~~~~~~~~~~~a~~~~~~av~v~----p~~~~~~~~~~~~~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~ 88 (236)
T PF01791_consen 13 GPMTGEEDIKKLCREAIEYGFDAVCVT----PGYVKPAAELLAGSGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRL 88 (236)
T ss_dssp TTHHHHHHHHHHHHHHHHHTSSEEEEE----GGGHHHHHHHSTTSTSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHT
T ss_pred CCCCchhhHHHHHHHHHHhCCCEEEEC----HHHHHHHHHHhhccccccceEEEeCCCCCccccccccchHHHHHHHHHc
Confidence 344444 55555588899999999988 677888888776544556666666531 12 4445555543
Q ss_pred -CCeeEE--ecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHH---------HHHHHH-HHH
Q 010627 252 -SDAFMV--ARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAE---------ATDVAN-AVL 318 (505)
Q Consensus 252 -sDgImI--aRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraE---------v~Dv~n-av~ 318 (505)
+|+|-+ -.|-++-+- ...+..-.+++.+.|+.+|.|+|+= +.|+..| +...+. +..
T Consensus 89 GAd~vd~vi~~~~~~~~~-~~~~~~~i~~v~~~~~~~gl~vIlE----------~~l~~~~~~~~~~~~~I~~a~ria~e 157 (236)
T PF01791_consen 89 GADEVDVVINYGALGSGN-EDEVIEEIAAVVEECHKYGLKVILE----------PYLRGEEVADEKKPDLIARAARIAAE 157 (236)
T ss_dssp T-SEEEEEEEHHHHHTTH-HHHHHHHHHHHHHHHHTSEEEEEEE----------ECECHHHBSSTTHHHHHHHHHHHHHH
T ss_pred CCceeeeecccccccccc-HHHHHHHHHHHHHHHhcCCcEEEEE----------EecCchhhcccccHHHHHHHHHHHHH
Confidence 565443 222222222 3466667789999999999999862 4555565 333333 678
Q ss_pred cCCceeeecccCCCCCCHHHHHHHHHHHHHHHh
Q 010627 319 DGTDCVMLSGETAAGAYPEVAVRTMAQICVEAE 351 (505)
Q Consensus 319 ~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE 351 (505)
.|+|.+=.+.=.. .....+.++.|+++++.+.
T Consensus 158 ~GaD~vKt~tg~~-~~~t~~~~~~~~~~~~~~~ 189 (236)
T PF01791_consen 158 LGADFVKTSTGKP-VGATPEDVELMRKAVEAAP 189 (236)
T ss_dssp TT-SEEEEE-SSS-SCSHHHHHHHHHHHHHTHS
T ss_pred hCCCEEEecCCcc-ccccHHHHHHHHHHHHhcC
Confidence 9999987754333 5566788999988887554
No 110
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=86.48 E-value=8.1 Score=42.49 Aligned_cols=122 Identities=16% Similarity=0.191 Sum_probs=73.3
Q ss_pred HHHHHhcccccCCCEEEEc--CCCChhHHHHHHHHHhccCCCce-EEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcC
Q 010627 190 KEDILKWGIPNQIDMIALS--FVRKGSDLVGVRKLLGGHAKNIL-LMSKVENQEGVANFDDILANSDAFMVARGDLGMEI 266 (505)
Q Consensus 190 ~~di~~~al~~g~d~V~~s--fV~sa~dv~~v~~~l~~~~~~~~-IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~ 266 (505)
.+.+ +..++.|+|.+.+- +-++ ..+....+.+.....+.. ++.-+-|++...++.+. -+|+|-+|=|--+.+.
T Consensus 230 ~e~a-~~L~~agvdvivvD~a~g~~-~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a--Gad~i~vg~g~gs~~~ 305 (486)
T PRK05567 230 EERA-EALVEAGVDVLVVDTAHGHS-EGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA--GADAVKVGIGPGSICT 305 (486)
T ss_pred HHHH-HHHHHhCCCEEEEECCCCcc-hhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc--CCCEEEECCCCCcccc
Confidence 4555 66688899987653 2222 334444444554444555 55778888887666552 4799987533222111
Q ss_pred Cc--h----hHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 267 PI--E----KIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 267 ~~--~----~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
.. . .-..+-..+.++|++.+.|+|.-.-+ .+ -.|++.|+..|||++|+.
T Consensus 306 ~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi---------~~---~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 306 TRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGI---------RY---SGDIAKALAAGASAVMLG 360 (486)
T ss_pred ceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCC---------CC---HHHHHHHHHhCCCEEEEC
Confidence 11 0 11223345567777789998853322 22 368899999999999993
No 111
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=86.42 E-value=8.5 Score=41.37 Aligned_cols=127 Identities=13% Similarity=0.098 Sum_probs=75.8
Q ss_pred hcHHHHHhcccccCCCEEEEcC-----C----------CChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc-
Q 010627 188 KDKEDILKWGIPNQIDMIALSF-----V----------RKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN- 251 (505)
Q Consensus 188 ~D~~di~~~al~~g~d~V~~sf-----V----------~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~- 251 (505)
.+..+..+...+.|+|+|-+.+ + ++++.+.++-+.+.+. .+++|++||= + .+.++.+|+++
T Consensus 113 ~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~-~~~Pv~vKl~-p-~~~~~~~~a~~~ 189 (420)
T PRK08318 113 EEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRG-SRLPVIVKLT-P-NITDIREPARAA 189 (420)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhc-cCCcEEEEcC-C-CcccHHHHHHHH
Confidence 3444443445566788876532 2 4555666665555443 3589999994 3 45567777663
Q ss_pred ----CCeeEE-----ecCc-----------ccC--c----CCchhHHHHHHHHHHHHHHc---CCCeEEehhhhHhhhcC
Q 010627 252 ----SDAFMV-----ARGD-----------LGM--E----IPIEKIFLAQKVMIYKCNIQ---GKPVVTATQMLESMIKS 302 (505)
Q Consensus 252 ----sDgImI-----aRgD-----------Lg~--e----~~~~~v~~~qk~Ii~~~~~~---gkpvi~ATqmLeSM~~~ 302 (505)
+|||.+ +|-. |.. . -|....|...+.|-+..++. ..|+|-.+-+.
T Consensus 190 ~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~------ 263 (420)
T PRK08318 190 KRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIE------ 263 (420)
T ss_pred HHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcC------
Confidence 588883 2211 100 0 12234455666666666655 57887655443
Q ss_pred CCCChHHHHHHHHHHHcCCceeeeccc
Q 010627 303 PRPTRAEATDVANAVLDGTDCVMLSGE 329 (505)
Q Consensus 303 ~~ptraEv~Dv~nav~~G~D~imLs~E 329 (505)
...|+...++.|||+||+..-
T Consensus 264 ------s~~da~e~i~aGA~~Vqi~ta 284 (420)
T PRK08318 264 ------TWRDAAEFILLGAGTVQVCTA 284 (420)
T ss_pred ------CHHHHHHHHHhCCChheeeee
Confidence 346888889999999999633
No 112
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=86.37 E-value=9.5 Score=37.38 Aligned_cols=147 Identities=18% Similarity=0.181 Sum_probs=93.2
Q ss_pred CCCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc--------CC
Q 010627 182 LPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN--------SD 253 (505)
Q Consensus 182 l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~--------sD 253 (505)
-|..|+.|.+.+.+.|.++++..|+++ +..+..+++.|. +.++++.+=|=-|.|-...+.-+.. +|
T Consensus 12 ~p~~t~~~i~~lc~~A~~~~~~avcv~----p~~v~~a~~~l~--~~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GAd 85 (211)
T TIGR00126 12 KADTTEEDIITLCAQAKTYKFAAVCVN----PSYVPLAKELLK--GTEVRICTVVGFPLGASTTDVKLYETKEAIKYGAD 85 (211)
T ss_pred CCCCCHHHHHHHHHHHHhhCCcEEEeC----HHHHHHHHHHcC--CCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCC
Confidence 367789998888889999999999885 788999999985 4578888888777766554433322 34
Q ss_pred eeEEecCcccC--cCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHH-HHHcCCceeeecccC
Q 010627 254 AFMVARGDLGM--EIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSGET 330 (505)
Q Consensus 254 gImIaRgDLg~--e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~n-av~~G~D~imLs~Et 330 (505)
.|=+-- ++|. +=.+..+..-.+++.+.|. |+|+-+ +||. +.-+..|+..... ++..|+|.+=-|
T Consensus 86 EiDvv~-n~g~l~~g~~~~v~~ei~~i~~~~~--g~~lKv---IlE~----~~L~~~ei~~a~~ia~eaGADfvKTs--- 152 (211)
T TIGR00126 86 EVDMVI-NIGALKDGNEEVVYDDIRAVVEACA--GVLLKV---IIET----GLLTDEEIRKACEICIDAGADFVKTS--- 152 (211)
T ss_pred EEEeec-chHhhhCCcHHHHHHHHHHHHHHcC--CCeEEE---EEec----CCCCHHHHHHHHHHHHHhCCCEEEeC---
Confidence 332210 1111 0112344444556666664 888765 4443 2344466655544 778899997654
Q ss_pred CCCCC----HHHHHHHHHHHHH
Q 010627 331 AAGAY----PEVAVRTMAQICV 348 (505)
Q Consensus 331 a~G~y----P~~~V~~m~~i~~ 348 (505)
.|.. ..+.++.|++++.
T Consensus 153 -TGf~~~gat~~dv~~m~~~v~ 173 (211)
T TIGR00126 153 -TGFGAGGATVEDVRLMRNTVG 173 (211)
T ss_pred -CCCCCCCCCHHHHHHHHHHhc
Confidence 4433 3578888887765
No 113
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=86.31 E-value=6.1 Score=45.02 Aligned_cols=279 Identities=18% Similarity=0.231 Sum_probs=144.5
Q ss_pred CCCCCCCCcccccCCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHH-H----HHHHHHHHHHHHHHcCCeeE
Q 010627 1 MDANCGVSTAIEKKPKTKIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHE-Y----HQETLNNLRTAMVNTGILCA 75 (505)
Q Consensus 1 ~~~~~~~~~~~~~~r~tkIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~-~----~~~~i~~ir~~~~~~~~~v~ 75 (505)
+|.|+|++..-.=.-.++|-+++ ..|+.|++.|..+.= +||-..- . ...+-.-.+..++.++++|.
T Consensus 20 vD~NvP~~~~g~i~dd~RI~~~l-------pTI~~l~~~gakvvl--~SH~gRP~~~~~~~~SL~~va~~L~~~L~~~V~ 90 (645)
T PRK13962 20 VDFNVPLDENGNITDDTRIRAAL-------PTIKYLLDHGAKVIL--VSHLGRPKGEFDPKFSMAPVAKRLSELLGKEVI 90 (645)
T ss_pred ecCCCCcCCCCcCCCcHhHHHHH-------HHHHHHHhCCCeEEE--EEecCCCCCCcCccCCHHHHHHHHHHHHCCCeE
Confidence 48888885211112356666655 479999999998654 4776441 1 11111122233456788998
Q ss_pred EEEecCCCeeEEeecCCCCcEEecCCCEEEEEecCCCCCCccEEEecchhhhcccCCCCEEEEeCCeEEEEEEEEeeeCC
Q 010627 76 VMLDTKGPEIRTGFLKDGKPIQLKQGQEITISTDYTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAG 155 (505)
Q Consensus 76 i~~Dl~GpkiR~g~~~~~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~~ 155 (505)
..-|.-||+.+- .+ -.|+.|+.+.|-.-.-..+.+ -|.+.|.+.+.+--.||++|. |-+- ....-
T Consensus 91 f~~d~~g~~~~~-~i-----~~l~~GeilLLEN~Rf~~~E~----~~d~~~~~~LA~l~DvyVNDA---Fg~a--HR~ha 155 (645)
T PRK13962 91 FAKDVIGDDAKK-AV-----AQLKEGDVLLLENVRFHKEET----KNDPEFAKELASLADIYVNDA---FGTA--HRAHA 155 (645)
T ss_pred ECCCCCCHHHHH-HH-----hcCCCCcEEEEeccCcCcccc----cCHHHHHHHHHHhCCEEEech---hhhh--hhccc
Confidence 888888887651 01 135666665554221111111 145677777776555888883 2211 00000
Q ss_pred eEEEEEeeCceecCCCCcccCCccccCCCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCC-ceEE-
Q 010627 156 LVKCRCENSAMLGERKNVNLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKN-ILLM- 233 (505)
Q Consensus 156 ~i~~~v~~gG~l~s~Kgvnlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~-~~Ii- 233 (505)
+ +-|...-+| . .. .+.+ .+++..+.+.+..-.+. +.|+
T Consensus 156 S------------------~~gi~~~lp----~---~a-G~lm--------------ekEl~~L~k~l~~p~rP~vaIlG 195 (645)
T PRK13962 156 S------------------TAGVAEYLP----A---VA-GFLM--------------EKEIEFLGKALANPQRPFVAILG 195 (645)
T ss_pred c------------------hhhhhhhhh----h---hh-hHHH--------------HHHHHHHHHHHcCCCCceEEEEc
Confidence 0 001100011 0 11 1111 45677777777432222 2233
Q ss_pred -EEecCHHHHhcHHHHHhcCCeeEEecC-----------cccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhh-h
Q 010627 234 -SKVENQEGVANFDDILANSDAFMVARG-----------DLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESM-I 300 (505)
Q Consensus 234 -akIEt~~av~nldeI~~~sDgImIaRg-----------DLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM-~ 300 (505)
||+.+.-.+ ++.++..+|.+++|-| +.|-++=-++....-++|++.+++.|+.+++-+...-.= .
T Consensus 196 GaKvsdKi~v--l~~ll~~~D~iligG~ma~tFl~a~G~~ig~sl~e~~~~~~a~~il~~a~~~~~~i~lPvD~~~~~~~ 273 (645)
T PRK13962 196 GAKVSDKIGV--IENLLEKVDKLLIGGGMAYTFLKAKGYEVGKSLVEEDKLDLAKELLAKAEEKGVKLLLPVDSVVAKEF 273 (645)
T ss_pred CccHHhHHHH--HHHHHHhCCEEEECcHHHHHHHHHcCCCCChhhcChhhHHHHHHHHHHHHhcCCEEECCcEEEeeccc
Confidence 688776555 7788888999999722 344333223555566799999999999877532211000 0
Q ss_pred cCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCch
Q 010627 301 KSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDYG 357 (505)
Q Consensus 301 ~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~ 357 (505)
....++ +..++ +.+- .|...|. +|. ++++...+++..|...+|.-
T Consensus 274 ~~~~~~--~~~~~-~~ip--~~~~~lD----IGp---~Ti~~~~~~i~~akti~wNG 318 (645)
T PRK13962 274 KNDAEH--KVVPS-DAIP--EDWMGLD----IGP---ETIELFAKKIADAKTIVWNG 318 (645)
T ss_pred CCCCce--EEEec-ccCC--CCCEEEe----eCH---HHHHHHHHHHhhCCEEEEEC
Confidence 000010 00010 1111 1222222 332 78899999999998877753
No 114
>PRK09389 (R)-citramalate synthase; Provisional
Probab=86.03 E-value=48 Score=36.64 Aligned_cols=154 Identities=16% Similarity=0.145 Sum_probs=102.5
Q ss_pred CChhcHHHHHhcccccCCCEEEEc-CCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc-CCee--EEecC
Q 010627 185 LTEKDKEDILKWGIPNQIDMIALS-FVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN-SDAF--MVARG 260 (505)
Q Consensus 185 lte~D~~di~~~al~~g~d~V~~s-fV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-sDgI--mIaRg 260 (505)
++..++..|.+...+.|+|.|=+. ++.++.|.+.++.+... +.+..|.+..-.. .+.++..++. .|.| +++-.
T Consensus 21 ~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~~-~~~~~i~a~~r~~--~~di~~a~~~g~~~v~i~~~~S 97 (488)
T PRK09389 21 LTPEEKLEIARKLDELGVDVIEAGSAITSEGEREAIKAVTDE-GLNAEICSFARAV--KVDIDAALECDVDSVHLVVPTS 97 (488)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeCCcCCHHHHHHHHHHHhc-CCCcEEEeecccC--HHHHHHHHhCCcCEEEEEEccC
Confidence 467777777677778999998764 45788888888776643 4456777766542 2334444443 3543 33444
Q ss_pred cccC----cCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHH-HHcCCceeeecccCCCCCC
Q 010627 261 DLGM----EIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANA-VLDGTDCVMLSGETAAGAY 335 (505)
Q Consensus 261 DLg~----e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~na-v~~G~D~imLs~Eta~G~y 335 (505)
|+-. ....++....-...++.|+++|..+.+. +...++.+..-+.+++.+ ...|+|.+.| .+|.=...
T Consensus 98 d~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~------~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l-~DTvG~~~ 170 (488)
T PRK09389 98 DLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELS------GEDASRADLDFLKELYKAGIEAGADRICF-CDTVGILT 170 (488)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEE------EeeCCCCCHHHHHHHHHHHHhCCCCEEEE-ecCCCCcC
Confidence 4422 1233455566677889999999887663 234455566667677664 4569999999 68888899
Q ss_pred HHHHHHHHHHHHH
Q 010627 336 PEVAVRTMAQICV 348 (505)
Q Consensus 336 P~~~V~~m~~i~~ 348 (505)
|.+.-+.++.+.+
T Consensus 171 P~~~~~lv~~l~~ 183 (488)
T PRK09389 171 PEKTYELFKRLSE 183 (488)
T ss_pred HHHHHHHHHHHHh
Confidence 9998888777654
No 115
>PLN02591 tryptophan synthase
Probab=85.96 E-value=6.2 Score=39.68 Aligned_cols=116 Identities=10% Similarity=0.042 Sum_probs=74.6
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEE--ecCcccCcCCchhHH
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMV--ARGDLGMEIPIEKIF 272 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImI--aRgDLg~e~~~~~v~ 272 (505)
+.+.+.|+|++++|=.- .++..++++.+++.|- ..|..+----.-+++..|++.++|.+= +| .|+.=.-..++
T Consensus 100 ~~~~~aGv~GviipDLP-~ee~~~~~~~~~~~gl--~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~--~GvTG~~~~~~ 174 (250)
T PLN02591 100 ATIKEAGVHGLVVPDLP-LEETEALRAEAAKNGI--ELVLLTTPTTPTERMKAIAEASEGFVYLVSS--TGVTGARASVS 174 (250)
T ss_pred HHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHcCC--eEEEEeCCCCCHHHHHHHHHhCCCcEEEeeC--CCCcCCCcCCc
Confidence 67788999999999764 5788888888877653 444444111124578999998876552 43 22221112444
Q ss_pred HHHHHHHHHHHH-cCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 273 LAQKVMIYKCNI-QGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 273 ~~qk~Ii~~~~~-~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
.-.+..++.+++ .++|+++..- .-|+. |+......|+||+...
T Consensus 175 ~~~~~~i~~vk~~~~~Pv~vGFG---------I~~~e---~v~~~~~~GADGvIVG 218 (250)
T PLN02591 175 GRVESLLQELKEVTDKPVAVGFG---------ISKPE---HAKQIAGWGADGVIVG 218 (250)
T ss_pred hhHHHHHHHHHhcCCCceEEeCC---------CCCHH---HHHHHHhcCCCEEEEC
Confidence 555666777766 4899987543 23333 5566677899999984
No 116
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=85.82 E-value=1.8 Score=49.89 Aligned_cols=85 Identities=19% Similarity=0.251 Sum_probs=70.3
Q ss_pred EEEcCCCChhHHHHHHHHHhccCC------CceEEEEecCHHHHhcHHHHHhc-----------CC-----eeEEecCcc
Q 010627 205 IALSFVRKGSDLVGVRKLLGGHAK------NILLMSKVENQEGVANFDDILAN-----------SD-----AFMVARGDL 262 (505)
Q Consensus 205 V~~sfV~sa~dv~~v~~~l~~~~~------~~~IiakIEt~~av~nldeI~~~-----------sD-----gImIaRgDL 262 (505)
.++|+.+++.||.++-=++++.|- .+.|+..-||.+.++|...|+.. .+ -||+|-.|=
T Consensus 489 yIISma~s~SDvLev~lLlKE~Gl~~~~~~~v~VvPLFETieDL~na~~vm~~ll~l~~yR~~l~~~~n~QEVMlGYSDS 568 (910)
T COG2352 489 YIISMAESVSDVLEVLLLLKEAGLVDPERARVPVVPLFETIEDLDNAPDVMTQLLNLPLYRALLAGRGNVQEVMLGYSDS 568 (910)
T ss_pred hhhhccCCHHHHHHHHHHHHHhCCCCccCCccccccccccHHHHhccHHHHHHHHcChHHHHHHcCCCCceEEEeccccc
Confidence 468999999999999999988874 38899999999999999999873 11 578776665
Q ss_pred cCcCCc----hhHHHHHHHHHHHHHHcCCCe
Q 010627 263 GMEIPI----EKIFLAQKVMIYKCNIQGKPV 289 (505)
Q Consensus 263 g~e~~~----~~v~~~qk~Ii~~~~~~gkpv 289 (505)
.-+=|+ -.+..+|+.+++.|+++|+-.
T Consensus 569 nKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~L 599 (910)
T COG2352 569 NKDGGYLAANWALYKAQLALVELCEKAGVEL 599 (910)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHhCceE
Confidence 555554 378899999999999999865
No 117
>PRK07695 transcriptional regulator TenI; Provisional
Probab=85.67 E-value=12 Score=35.80 Aligned_cols=128 Identities=12% Similarity=0.079 Sum_probs=75.6
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHh-cCCeeEEecCcccCcC---Cchh
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILA-NSDAFMVARGDLGMEI---PIEK 270 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~-~sDgImIaRgDLg~e~---~~~~ 270 (505)
+.+++.|+|+|.++.-. ..+..+++.+ .+..|-+.+.+.+- +.+..+ -+|.+++++-.-+..- +...
T Consensus 67 ~la~~~~~~gvHl~~~~--~~~~~~r~~~----~~~~ig~s~~s~e~---a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g 137 (201)
T PRK07695 67 DIALLLNIHRVQLGYRS--FSVRSVREKF----PYLHVGYSVHSLEE---AIQAEKNGADYVVYGHVFPTDCKKGVPARG 137 (201)
T ss_pred HHHHHcCCCEEEeCccc--CCHHHHHHhC----CCCEEEEeCCCHHH---HHHHHHcCCCEEEECCCCCCCCCCCCCCCC
Confidence 44677899999998632 2355666544 23456665555433 222222 2699988763332211 1111
Q ss_pred HHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHH
Q 010627 271 IFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICV 348 (505)
Q Consensus 271 v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~ 348 (505)
+ +.+-+.+...++|++.+..+ +. .++..+...|+|++.+++.-.....|.++++.+.++..
T Consensus 138 ~----~~l~~~~~~~~ipvia~GGI----------~~---~~~~~~~~~Ga~gvav~s~i~~~~~p~~~~~~~~~~~~ 198 (201)
T PRK07695 138 L----EELSDIARALSIPVIAIGGI----------TP---ENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESIK 198 (201)
T ss_pred H----HHHHHHHHhCCCCEEEEcCC----------CH---HHHHHHHHcCCCEEEEEHHHhcCCCHHHHHHHHHHHHh
Confidence 1 22222233457999865543 22 34566677899999998777766789999998877653
No 118
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=85.59 E-value=19 Score=35.44 Aligned_cols=133 Identities=11% Similarity=0.091 Sum_probs=83.8
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEe---cCcccCc---CCc
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVA---RGDLGME---IPI 268 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIa---RgDLg~e---~~~ 268 (505)
+.-.++|+|+|.+. +++..++.++-+++++.|.+..+.-.=+| .++.++.++...|.+++- +|-=|-. .++
T Consensus 75 ~~~~~~gad~i~~H-~Ea~~~~~~~l~~ik~~g~k~GlalnP~T--p~~~i~~~l~~~D~vlvMtV~PGfgGq~fi~~~l 151 (220)
T PRK08883 75 PDFAKAGASMITFH-VEASEHVDRTLQLIKEHGCQAGVVLNPAT--PLHHLEYIMDKVDLILLMSVNPGFGGQSFIPHTL 151 (220)
T ss_pred HHHHHhCCCEEEEc-ccCcccHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHhCCeEEEEEecCCCCCceecHhHH
Confidence 44467899988765 46667788888888888888888888888 577799999999998882 2211111 112
Q ss_pred hhHHHHHHHHHHHHHHcC--CCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHH
Q 010627 269 EKIFLAQKVMIYKCNIQG--KPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQI 346 (505)
Q Consensus 269 ~~v~~~qk~Ii~~~~~~g--kpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i 346 (505)
+++..+.+ ...++| .|+.+..- =+. ..+...+..|+|++.+.+--.....|.++++.+++.
T Consensus 152 ekI~~l~~----~~~~~~~~~~I~vdGG----------I~~---eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~~ 214 (220)
T PRK08883 152 DKLRAVRK----MIDESGRDIRLEIDGG----------VKV---DNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRAE 214 (220)
T ss_pred HHHHHHHH----HHHhcCCCeeEEEECC----------CCH---HHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHH
Confidence 23332222 222233 66543321 122 234556677999999864432235688888888775
Q ss_pred H
Q 010627 347 C 347 (505)
Q Consensus 347 ~ 347 (505)
.
T Consensus 215 ~ 215 (220)
T PRK08883 215 L 215 (220)
T ss_pred H
Confidence 4
No 119
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=85.54 E-value=22 Score=33.01 Aligned_cols=125 Identities=18% Similarity=0.161 Sum_probs=74.6
Q ss_pred ChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCC-CceEEEEecC-------HHHHhcHHHHHhc-CCeeE
Q 010627 186 TEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAK-NILLMSKVEN-------QEGVANFDDILAN-SDAFM 256 (505)
Q Consensus 186 te~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~-~~~IiakIEt-------~~av~nldeI~~~-sDgIm 256 (505)
+..+.+.+.++..+.|+++|.+.. +-++.+++.. +. ++.+++++=. .+.++..++-.+. +|+++
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g----~~i~~~~~~~---~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~ 83 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP----GYVRLAADAL---AGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEID 83 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH----HHHHHHHHHh---CCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence 344455555888899999998885 5555555544 33 6889999855 4466666665554 69999
Q ss_pred EecCcccCcCC--chhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCC--ChHHHHHHHH-HHHcCCceeeec
Q 010627 257 VARGDLGMEIP--IEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRP--TRAEATDVAN-AVLDGTDCVMLS 327 (505)
Q Consensus 257 IaRgDLg~e~~--~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~p--traEv~Dv~n-av~~G~D~imLs 327 (505)
+... ...... .+.+...-+.+.+.| ..+.|+++-. .|.- +..++..... +...|+|++=.+
T Consensus 84 v~~~-~~~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~--------~p~~~~~~~~~~~~~~~~~~~g~~~iK~~ 149 (201)
T cd00945 84 VVIN-IGSLKEGDWEEVLEEIAAVVEAA-DGGLPLKVIL--------ETRGLKTADEIAKAARIAAEAGADFIKTS 149 (201)
T ss_pred Eecc-HHHHhCCCHHHHHHHHHHHHHHh-cCCceEEEEE--------ECCCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 8531 111111 344455555666666 5699987521 1222 2334444433 345799998654
No 120
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=85.50 E-value=22 Score=35.21 Aligned_cols=135 Identities=14% Similarity=0.107 Sum_probs=83.1
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEE---ecCcccCcCCc---
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMV---ARGDLGMEIPI--- 268 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImI---aRgDLg~e~~~--- 268 (505)
..-.++|+|+|.+.+ ++..++.+.-+++++.|.+..|.-+=+| .++.+..++...|.|+| -||-=|-.+-.
T Consensus 79 ~~~~~~gad~I~~H~-Ea~~~~~~~l~~Ir~~g~k~GlalnP~T--~~~~i~~~l~~vD~VlvMtV~PGf~GQ~fi~~~l 155 (223)
T PRK08745 79 PDFADAGATTISFHP-EASRHVHRTIQLIKSHGCQAGLVLNPAT--PVDILDWVLPELDLVLVMSVNPGFGGQAFIPSAL 155 (223)
T ss_pred HHHHHhCCCEEEEcc-cCcccHHHHHHHHHHCCCceeEEeCCCC--CHHHHHHHHhhcCEEEEEEECCCCCCccccHHHH
Confidence 333677999988765 5556777777888888888888888888 57779999999999988 33322222211
Q ss_pred hhHHHHHHHHHHHHHHcCCCe--EEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHH
Q 010627 269 EKIFLAQKVMIYKCNIQGKPV--VTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQI 346 (505)
Q Consensus 269 ~~v~~~qk~Ii~~~~~~gkpv--i~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i 346 (505)
+++..+++.+ .+++..+ -+... =+. ..+......|+|.+++.+--.-...|.++++.|++.
T Consensus 156 ~KI~~l~~~~----~~~~~~~~IeVDGG----------I~~---eti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~lr~~ 218 (223)
T PRK08745 156 DKLRAIRKKI----DALGKPIRLEIDGG----------VKA---DNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRAA 218 (223)
T ss_pred HHHHHHHHHH----HhcCCCeeEEEECC----------CCH---HHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHH
Confidence 2222222222 2345443 22221 111 223456667999999853221123588999988876
Q ss_pred HHH
Q 010627 347 CVE 349 (505)
Q Consensus 347 ~~~ 349 (505)
+.+
T Consensus 219 ~~~ 221 (223)
T PRK08745 219 VAA 221 (223)
T ss_pred HHh
Confidence 543
No 121
>PRK15447 putative protease; Provisional
Probab=85.48 E-value=6.6 Score=40.44 Aligned_cols=118 Identities=18% Similarity=0.210 Sum_probs=77.1
Q ss_pred hcHHHHHhcccccCCCEEEEcCCC-------ChhHHHHHHHHHhccCCCceE-EEEe-cCHHHHhcHHHHHhc-CCeeEE
Q 010627 188 KDKEDILKWGIPNQIDMIALSFVR-------KGSDLVGVRKLLGGHAKNILL-MSKV-ENQEGVANFDDILAN-SDAFMV 257 (505)
Q Consensus 188 ~D~~di~~~al~~g~d~V~~sfV~-------sa~dv~~v~~~l~~~~~~~~I-iakI-Et~~av~nldeI~~~-sDgImI 257 (505)
...+++.....+.|+|.|-+.... +.+++.++.+.++++|+++.+ +..| -..+-++.+.++++. .|+|++
T Consensus 15 ~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~v 94 (301)
T PRK15447 15 ETVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVEA 94 (301)
T ss_pred CCHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEEE
Confidence 445566233346799999997432 669999999999998887665 3355 446666777887775 377776
Q ss_pred ecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCC
Q 010627 258 ARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETA 331 (505)
Q Consensus 258 aRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta 331 (505)
+|+|. +..+ ++.|.|++..|||= -+-.+. +..+-..|++.+.||-|-+
T Consensus 95 --~d~g~------l~~~--------~e~~~~l~~d~~ln--------i~N~~a--~~~l~~~G~~rv~ls~ELs 142 (301)
T PRK15447 95 --NDLGA------VRLL--------AERGLPFVAGPALN--------CYNAAT--LALLARLGATRWCMPVELS 142 (301)
T ss_pred --eCHHH------HHHH--------HhcCCCEEEecccc--------cCCHHH--HHHHHHcCCcEEEECCcCC
Confidence 46652 2222 23499999888753 111112 2234456999999998865
No 122
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=85.16 E-value=2.6 Score=44.26 Aligned_cols=151 Identities=16% Similarity=0.175 Sum_probs=85.6
Q ss_pred cHHHHHhcccccCCCEE--EEcCCCChhHHHHHHHHHhccCCCceEEEEe--cCHHHHhcHHHHHhcCCeeEEecCcccC
Q 010627 189 DKEDILKWGIPNQIDMI--ALSFVRKGSDLVGVRKLLGGHAKNILLMSKV--ENQEGVANFDDILANSDAFMVARGDLGM 264 (505)
Q Consensus 189 D~~di~~~al~~g~d~V--~~sfV~sa~dv~~v~~~l~~~~~~~~IiakI--Et~~av~nldeI~~~sDgImIaRgDLg~ 264 (505)
..+.| ....++|+|.| ++|-.++++.+.++++.|.+.|.+++++|-| .-..|+.. +- ..|.|=|-||.++-
T Consensus 33 tv~QI-~~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~a---~~-~v~kiRINPGNi~~ 107 (359)
T PF04551_consen 33 TVAQI-KRLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALGSPIPLVADIHFDYRLALEA---IE-AVDKIRINPGNIVD 107 (359)
T ss_dssp HHHHH-HHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHHH---HH-C-SEEEE-TTTSS-
T ss_pred HHHHH-HHHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHHH---HH-HhCeEEECCCcccc
Confidence 34455 55567899975 5566666777777777888889999999999 44555544 33 38999999999963
Q ss_pred cC--CchhHHHHHHHHHHHHHHcCCCe--EEehhhhHh-hhcCCCCChHHH-----HHHHHHHHcCCceeeecccCCCCC
Q 010627 265 EI--PIEKIFLAQKVMIYKCNIQGKPV--VTATQMLES-MIKSPRPTRAEA-----TDVANAVLDGTDCVMLSGETAAGA 334 (505)
Q Consensus 265 e~--~~~~v~~~qk~Ii~~~~~~gkpv--i~ATqmLeS-M~~~~~ptraEv-----~Dv~nav~~G~D~imLs~Eta~G~ 334 (505)
++ +...+..--+.++++|+++|+|+ ++-.-=|+. |.....||..-+ ..+.-+-..|+|=+.+|-=++
T Consensus 108 ~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~~~~~~ky~~t~~amvesA~~~~~~le~~~f~~iviSlKsS--- 184 (359)
T PF04551_consen 108 EFQEELGSIREKVKEVVEAAKERGIPIRIGVNSGSLEKDILEKYGPTPEAMVESALEHVRILEELGFDDIVISLKSS--- 184 (359)
T ss_dssp ---SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS-HHHHHHHCHHHHHHHHHHHHHHHHHHHCT-GGEEEEEEBS---
T ss_pred cccccccchHHHHHHHHHHHHHCCCCEEEecccccCcHHHHhhccchHHHHHHHHHHHHHHHHHCCCCcEEEEEEeC---
Confidence 32 12255677789999999999997 443332221 111112222211 233345567888888876554
Q ss_pred CHHHHHHHHHHHH
Q 010627 335 YPEVAVRTMAQIC 347 (505)
Q Consensus 335 yP~~~V~~m~~i~ 347 (505)
.+..+++.-+.+.
T Consensus 185 dv~~~i~ayr~la 197 (359)
T PF04551_consen 185 DVPETIEAYRLLA 197 (359)
T ss_dssp SHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH
Confidence 3444454444443
No 123
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=84.99 E-value=36 Score=34.85 Aligned_cols=205 Identities=16% Similarity=0.167 Sum_probs=111.3
Q ss_pred CCCcccCCccccCCCCChhcHHHHHhcccccCCCEEEEc-CCCC-----hhHHHHHHHHHhccCCCceEEEEecCHHHHh
Q 010627 170 RKNVNLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIALS-FVRK-----GSDLVGVRKLLGGHAKNILLMSKVENQEGVA 243 (505)
Q Consensus 170 ~Kgvnlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~s-fV~s-----a~dv~~v~~~l~~~~~~~~IiakIEt~~av~ 243 (505)
|-|-.-|+.. ++..++..|.+...+.|++.|=+. |+.. ..|-.++-+.+... ....+.+..-+.++++
T Consensus 13 RDG~Q~~~~~-----~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~-~~~~~~~l~~~~~~ie 86 (287)
T PRK05692 13 RDGLQNEKRF-----IPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRR-PGVTYAALTPNLKGLE 86 (287)
T ss_pred CccccCcCCC-----cCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhcc-CCCeEEEEecCHHHHH
Confidence 4444445543 466777777677778999998663 5432 12223333333322 2345545444555554
Q ss_pred cHHHHHhc-CCeeEE--ecCcc----cCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCC---ChHHHHHH
Q 010627 244 NFDDILAN-SDAFMV--ARGDL----GMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRP---TRAEATDV 313 (505)
Q Consensus 244 nldeI~~~-sDgImI--aRgDL----g~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~p---traEv~Dv 313 (505)
.. ++. .|.+.+ .-.|+ -.....++.....+.+++.++++|..+..+=.+ ....|.- +.+.+.++
T Consensus 87 ~A---~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~---~~~~~~~~~~~~~~~~~~ 160 (287)
T PRK05692 87 AA---LAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSC---VLGCPYEGEVPPEAVADV 160 (287)
T ss_pred HH---HHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEE---EecCCCCCCCCHHHHHHH
Confidence 33 222 454433 33332 112334455566688999999999987421000 0011222 34445554
Q ss_pred HH-HHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCchhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcCCcE
Q 010627 314 AN-AVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDYGDVFKRVMQHSPVPMSPLESLASSAVRTANSARATL 392 (505)
Q Consensus 314 ~n-av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~ 392 (505)
+. +...|+|.|.| .+|.=-..|.++-+.+..+.++.-. ....-|++. + .-+|.+-..+|...+++.
T Consensus 161 ~~~~~~~G~d~i~l-~DT~G~~~P~~v~~lv~~l~~~~~~-~~i~~H~Hn---------~--~Gla~AN~laA~~aG~~~ 227 (287)
T PRK05692 161 AERLFALGCYEISL-GDTIGVGTPGQVRAVLEAVLAEFPA-ERLAGHFHD---------T--YGQALANIYASLEEGITV 227 (287)
T ss_pred HHHHHHcCCcEEEe-ccccCccCHHHHHHHHHHHHHhCCC-CeEEEEecC---------C--CCcHHHHHHHHHHhCCCE
Confidence 44 66789999999 5888778899999998887754311 111111110 1 123444556677889984
Q ss_pred EEEEcCCc
Q 010627 393 ILVLTRGG 400 (505)
Q Consensus 393 Ivv~T~sG 400 (505)
|=-|-.|
T Consensus 228 -id~s~~G 234 (287)
T PRK05692 228 -FDASVGG 234 (287)
T ss_pred -EEEEccc
Confidence 4444444
No 124
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=84.88 E-value=16 Score=39.52 Aligned_cols=141 Identities=18% Similarity=0.241 Sum_probs=74.0
Q ss_pred chhhhcccCCCCEEEEe--------CCeEEEEEEEEeeeCCeEEEEEeeCceec----------CCCCcccCCccccCCC
Q 010627 123 YKKLAVDVQPGSVILCS--------DGTISFTVLECNVKAGLVKCRCENSAMLG----------ERKNVNLPGVIVDLPT 184 (505)
Q Consensus 123 ~~~~~~~v~~Gd~I~id--------DG~i~l~V~~v~~~~~~i~~~v~~gG~l~----------s~Kgvnlp~~~~~l~~ 184 (505)
+..+-..++.|+.|++. .|.++|.|.+++..+ -|.|. ..+|.-=|+...++|.
T Consensus 63 ~~~~~~~~~~G~~v~v~g~~~~y~~~g~~ql~v~~i~~~g---------~G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~ 133 (438)
T PRK00286 63 ARRLKFKPEEGMKVLVRGKVSLYEPRGDYQLIVEEIEPAG---------IGALAAAFEQLKEKLAAEGLFDPERKKPLPF 133 (438)
T ss_pred hhcCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEeeeCC---------ccHHHHHHHHHHHHHHHCCCCChhhcCCCCC
Confidence 44555667999998875 477777777553321 02221 2334433444455555
Q ss_pred CChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc--------CCeeE
Q 010627 185 LTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN--------SDAFM 256 (505)
Q Consensus 185 lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~--------sDgIm 256 (505)
++.+ |++=--.+++-+..+...+..+.....+.--==+.+|-....+|+++ .|.|+
T Consensus 134 ~p~~----------------I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dvii 197 (438)
T PRK00286 134 FPKR----------------IGVITSPTGAAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLI 197 (438)
T ss_pred CCCE----------------EEEEeCCccHHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEE
Confidence 4432 22222356666666666666554322222111122222223333321 49999
Q ss_pred EecCcccCcCCchhH-HHHHHHHHHHHHHcCCCeEEe
Q 010627 257 VARGDLGMEIPIEKI-FLAQKVMIYKCNIQGKPVVTA 292 (505)
Q Consensus 257 IaRgDLg~e~~~~~v-~~~qk~Ii~~~~~~gkpvi~A 292 (505)
|+||-=+. |++ +.=...++++..+...|||.|
T Consensus 198 i~RGGGS~----eDL~~Fn~e~v~~ai~~~~~Pvis~ 230 (438)
T PRK00286 198 VARGGGSL----EDLWAFNDEAVARAIAASRIPVISA 230 (438)
T ss_pred EecCCCCH----HHhhccCcHHHHHHHHcCCCCEEEe
Confidence 99993221 121 223456777788889999987
No 125
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=84.43 E-value=17 Score=37.32 Aligned_cols=132 Identities=19% Similarity=0.264 Sum_probs=87.3
Q ss_pred HHHhcccccCCCEEEEcCCCChhHHHHHHHHH--------------------------------------------hccC
Q 010627 192 DILKWGIPNQIDMIALSFVRKGSDLVGVRKLL--------------------------------------------GGHA 227 (505)
Q Consensus 192 di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l--------------------------------------------~~~~ 227 (505)
.+...+++.|+|+|.+. ++|+.+++++= ...|
T Consensus 19 ~~it~alEaG~d~vvv~----~~dvervkeLGni~vaa~~~daDiv~vgk~gegdgt~~lp~~~~~s~di~~~~~~~~~G 94 (376)
T COG1465 19 KRITAALEAGVDVVVVR----PADVERVKELGNIKVAAPSDDADIVVVGKDGEGDGTVDLPADISGSADIEALRELMDRG 94 (376)
T ss_pred HHHHHHHhcCCCEEEEC----HHHHHHHHhhCceEEecccCCCceEEeccCCCCCCcccCcccccccccHHHHHHhhhcC
Confidence 33388999999999876 57777777632 1234
Q ss_pred CCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCCh
Q 010627 228 KNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTR 307 (505)
Q Consensus 228 ~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptr 307 (505)
........|.+.+--+...++...+|.+++---|..+ +|+|.+..- .++-+--++|. .-+-
T Consensus 95 ~~~~~yV~I~~ke~EefA~~~~~~~d~~i~~g~DWki-IPLENlIA~--------l~~e~~kliA~----------V~sa 155 (376)
T COG1465 95 HEVAAYVEIRSKEDEEFAAERAKVADYVIVVGEDWKI-IPLENLIAD--------LQHEKVKLIAG----------VKSA 155 (376)
T ss_pred cceEEEEEEcCccchHHHHhhccccceEEEEcCcceE-eeHHHHHHH--------hhccceEEEEE----------eccH
Confidence 4566788888888777778888888987775456653 677764211 12223334332 2344
Q ss_pred HHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhc
Q 010627 308 AEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAES 352 (505)
Q Consensus 308 aEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~ 352 (505)
.|..=-...+..|+||++|.++ .| +-++-..++.+++|+
T Consensus 156 eEA~vA~eTLE~GaDgVll~~~-----d~-~eIk~~~~~~~e~~~ 194 (376)
T COG1465 156 EEARVALETLEKGADGVLLDSD-----DP-EEIKKTAEVVEEAES 194 (376)
T ss_pred HHHHHHHHHHhccCceEEeCCC-----CH-HHHHHHHHHHHHhcc
Confidence 5555557788999999999755 55 556666777888874
No 126
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=84.00 E-value=14 Score=35.85 Aligned_cols=128 Identities=12% Similarity=0.057 Sum_probs=64.3
Q ss_pred HHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEec---------------CHHHHhcHHHHHhc-CC
Q 010627 190 KEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVE---------------NQEGVANFDDILAN-SD 253 (505)
Q Consensus 190 ~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIE---------------t~~av~nldeI~~~-sD 253 (505)
.+++ +..++.|+|.|++..-- .++...++++....+.+..+++ |. ....++.+..+.+. +|
T Consensus 85 ~e~~-~~~~~~Gad~vvigs~~-l~dp~~~~~i~~~~g~~~i~~s-id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~ 161 (234)
T cd04732 85 LEDI-ERLLDLGVSRVIIGTAA-VKNPELVKELLKEYGGERIVVG-LDAKDGKVATKGWLETSEVSLEELAKRFEELGVK 161 (234)
T ss_pred HHHH-HHHHHcCCCEEEECchH-HhChHHHHHHHHHcCCceEEEE-EEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCC
Confidence 4555 55577899998876432 2334444444444443212222 11 11122333333333 68
Q ss_pred eeEEe-cCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCC
Q 010627 254 AFMVA-RGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAA 332 (505)
Q Consensus 254 gImIa-RgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~ 332 (505)
++++. +.--|..-+ .. ...+-+.++....|++.+.-+ -+.. |+..+...|+|++|+..---.
T Consensus 162 ~iii~~~~~~g~~~g-~~----~~~i~~i~~~~~ipvi~~GGi---------~~~~---di~~~~~~Ga~gv~vg~~~~~ 224 (234)
T cd04732 162 AIIYTDISRDGTLSG-PN----FELYKELAAATGIPVIASGGV---------SSLD---DIKALKELGVAGVIVGKALYE 224 (234)
T ss_pred EEEEEeecCCCccCC-CC----HHHHHHHHHhcCCCEEEecCC---------CCHH---HHHHHHHCCCCEEEEeHHHHc
Confidence 88774 222222222 12 122333344568999986653 3334 445555569999999755555
Q ss_pred CCCHH
Q 010627 333 GAYPE 337 (505)
Q Consensus 333 G~yP~ 337 (505)
|.++.
T Consensus 225 ~~~~~ 229 (234)
T cd04732 225 GKITL 229 (234)
T ss_pred CCCCH
Confidence 55443
No 127
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=83.87 E-value=51 Score=33.25 Aligned_cols=204 Identities=16% Similarity=0.059 Sum_probs=114.9
Q ss_pred cCCCCcccCCccccCCCCChhcHHHHHhcccccCCCEEEEcC-CCChhHHHHHHHHHhccCCCceEEEE-ecCHHHHhcH
Q 010627 168 GERKNVNLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSF-VRKGSDLVGVRKLLGGHAKNILLMSK-VENQEGVANF 245 (505)
Q Consensus 168 ~s~Kgvnlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~sf-V~sa~dv~~v~~~l~~~~~~~~Iiak-IEt~~av~nl 245 (505)
.-|-|...|+..+ |..++..|.+...+.|+|.|=+.+ -.++++...++.+. ..+....+.+. .-+.++++..
T Consensus 7 TLRDG~Q~~~~~~-----s~~~k~~i~~~L~~~Gv~~IEvG~P~~~~~~~~~~~~l~-~~~~~~~v~~~~r~~~~di~~a 80 (262)
T cd07948 7 TLREGEQFANAFF-----DTEDKIEIAKALDAFGVDYIELTSPAASPQSRADCEAIA-KLGLKAKILTHIRCHMDDARIA 80 (262)
T ss_pred CCCCcCcCCCCCC-----CHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHH-hCCCCCcEEEEecCCHHHHHHH
Confidence 3456666676543 666666665777889999987733 33454444444443 33444444443 3344444333
Q ss_pred HHHHhcCCeeEE--ecCccc----CcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHc
Q 010627 246 DDILANSDAFMV--ARGDLG----MEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLD 319 (505)
Q Consensus 246 deI~~~sDgImI--aRgDLg----~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~ 319 (505)
.+ .-.|.|.+ +-.|.- .....++.....+.+++.++.+|..+.+.-. ...+-+...+.+++..+.+
T Consensus 81 ~~--~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e------da~r~~~~~l~~~~~~~~~ 152 (262)
T cd07948 81 VE--TGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE------DSFRSDLVDLLRVYRAVDK 152 (262)
T ss_pred HH--cCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE------eeCCCCHHHHHHHHHHHHH
Confidence 32 12465444 222211 1123456667778899999999988765321 1112225566677765444
Q ss_pred -CCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCchhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcCCcEEEEEcC
Q 010627 320 -GTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDYGDVFKRVMQHSPVPMSPLESLASSAVRTANSARATLILVLTR 398 (505)
Q Consensus 320 -G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~ 398 (505)
|+|.+.| .+|.=..+|.++-+++..+-+..- .....|++. + .-+|.+-...|...+++ +|=.|-
T Consensus 153 ~g~~~i~l-~Dt~G~~~P~~v~~~~~~~~~~~~--~~i~~H~Hn---------~--~Gla~an~~~a~~aG~~-~vd~s~ 217 (262)
T cd07948 153 LGVNRVGI-ADTVGIATPRQVYELVRTLRGVVS--CDIEFHGHN---------D--TGCAIANAYAALEAGAT-HIDTTV 217 (262)
T ss_pred cCCCEEEE-CCcCCCCCHHHHHHHHHHHHHhcC--CeEEEEECC---------C--CChHHHHHHHHHHhCCC-EEEEec
Confidence 9999998 688888999988888877754321 111111110 1 12455555566778888 455555
Q ss_pred Cc
Q 010627 399 GG 400 (505)
Q Consensus 399 sG 400 (505)
.|
T Consensus 218 ~G 219 (262)
T cd07948 218 LG 219 (262)
T ss_pred cc
Confidence 44
No 128
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=83.62 E-value=4.7 Score=44.90 Aligned_cols=154 Identities=12% Similarity=0.107 Sum_probs=101.6
Q ss_pred hhcHHHHHhcccccCCCEEE--EcCCCChhHHHHHHHHHhccCCCceEEEEecC--HHHHhcHHHHHhcCCeeEEecCcc
Q 010627 187 EKDKEDILKWGIPNQIDMIA--LSFVRKGSDLVGVRKLLGGHAKNILLMSKVEN--QEGVANFDDILANSDAFMVARGDL 262 (505)
Q Consensus 187 e~D~~di~~~al~~g~d~V~--~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt--~~av~nldeI~~~sDgImIaRgDL 262 (505)
+...+.| ....+.|++.|- +|-.+.++.+..+++.|...|.+++++|-|-- ..|+.. ++..|.|=|-||.+
T Consensus 45 ~atv~Qi-~~L~~aGceiVRvtvp~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~A~~a----~~~vdkiRINPGNi 119 (606)
T PRK00694 45 DGTVRQI-CALQEWGCDIVRVTVQGLKEAQACEHIKERLIQQGISIPLVADIHFFPQAAMHV----ADFVDKVRINPGNY 119 (606)
T ss_pred HHHHHHH-HHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhccCCCCCEEeecCCChHHHHHH----HHhcCceEECCccc
Confidence 4445566 566778999864 45556666667777778788899999999843 233322 23389999999999
Q ss_pred cCc---------------CCchhHHHHHHHHHHHHHHcCCCeEEehh-------hhHhhhcCCCCChHHH-----HHHHH
Q 010627 263 GME---------------IPIEKIFLAQKVMIYKCNIQGKPVVTATQ-------MLESMIKSPRPTRAEA-----TDVAN 315 (505)
Q Consensus 263 g~e---------------~~~~~v~~~qk~Ii~~~~~~gkpvi~ATq-------mLeSM~~~~~ptraEv-----~Dv~n 315 (505)
+-. -.++++..--+.++++|+++|+|+=+.++ +|+.. -+|..-+ .-+.-
T Consensus 120 ~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN~GSL~~~i~~~y----G~tpegmVeSAle~~~i 195 (606)
T PRK00694 120 VDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVNHGSLSERVMQRY----GDTIEGMVYSALEYIEV 195 (606)
T ss_pred CCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHh----CCCHHHHHHHHHHHHHH
Confidence 861 12345566668999999999999844442 33321 1333222 22333
Q ss_pred HHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhc
Q 010627 316 AVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAES 352 (505)
Q Consensus 316 av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~ 352 (505)
+-..|++=+.+|-=++ .|...|+.-+.+++..++
T Consensus 196 ~e~~~f~diviS~KsS---nv~~mi~AyrlLa~~~d~ 229 (606)
T PRK00694 196 CEKLDYRDVVFSMKSS---NPKVMVAAYRQLAKDLDA 229 (606)
T ss_pred HHHCCCCcEEEEEEcC---CHHHHHHHHHHHHHHhhc
Confidence 6678999999986544 577777777777766654
No 129
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=83.23 E-value=14 Score=38.92 Aligned_cols=118 Identities=24% Similarity=0.226 Sum_probs=82.2
Q ss_pred hhcHHHHHhcccccCCCEEEEcCC----------CChhHHHHHHHHHhccCCCceEEEEe----cCHH-HHhcHHHHHhc
Q 010627 187 EKDKEDILKWGIPNQIDMIALSFV----------RKGSDLVGVRKLLGGHAKNILLMSKV----ENQE-GVANFDDILAN 251 (505)
Q Consensus 187 e~D~~di~~~al~~g~d~V~~sfV----------~sa~dv~~v~~~l~~~~~~~~IiakI----Et~~-av~nldeI~~~ 251 (505)
..+.+++ +.+++.|+|.|-+.+- -+.+|+++..+++.++|++..+..-+ +..+ ..+-++...+.
T Consensus 13 ag~l~~l-~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~ 91 (347)
T COG0826 13 AGNLEDL-KAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVEL 91 (347)
T ss_pred CCCHHHH-HHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHc
Confidence 3467788 8899999999988844 57788999999999998765433321 1111 23344555544
Q ss_pred -CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcC--CCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecc
Q 010627 252 -SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQG--KPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG 328 (505)
Q Consensus 252 -sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~g--kpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~ 328 (505)
.|+|+++ |+| ++..+++.+ .|+.+.||+-= |-+ ..+.-+-..|+.-++|+-
T Consensus 92 GvDaviv~--Dpg--------------~i~l~~e~~p~l~ih~S~q~~v--------~N~--~~~~f~~~~G~~rvVl~r 145 (347)
T COG0826 92 GVDAVIVA--DPG--------------LIMLARERGPDLPIHVSTQANV--------TNA--ETAKFWKELGAKRVVLPR 145 (347)
T ss_pred CCCEEEEc--CHH--------------HHHHHHHhCCCCcEEEeeeEec--------CCH--HHHHHHHHcCCEEEEeCc
Confidence 6999994 776 477888888 99999999651 111 123345566999999998
Q ss_pred cCC
Q 010627 329 ETA 331 (505)
Q Consensus 329 Eta 331 (505)
|-+
T Consensus 146 Els 148 (347)
T COG0826 146 ELS 148 (347)
T ss_pred cCC
Confidence 865
No 130
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=83.12 E-value=14 Score=37.68 Aligned_cols=128 Identities=14% Similarity=0.175 Sum_probs=69.9
Q ss_pred hhcHHHHHhcccccC-CCEEEE------------cCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc--
Q 010627 187 EKDKEDILKWGIPNQ-IDMIAL------------SFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN-- 251 (505)
Q Consensus 187 e~D~~di~~~al~~g-~d~V~~------------sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-- 251 (505)
..|.....+.+.+.| +|+|=+ .+-++++.+.++-+.+++.- ++.|++||=- .++++.++++.
T Consensus 103 ~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~--~~~~~~~~a~~l~ 179 (301)
T PRK07259 103 EEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTP--NVTDIVEIAKAAE 179 (301)
T ss_pred HHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCC--CchhHHHHHHHHH
Confidence 344445446777788 999855 22334555566555555432 6789999851 22344444432
Q ss_pred ---CCeeEE-----ecC-cccC-------cC----CchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHH
Q 010627 252 ---SDAFMV-----ARG-DLGM-------EI----PIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEAT 311 (505)
Q Consensus 252 ---sDgImI-----aRg-DLg~-------e~----~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~ 311 (505)
+|+|.+ ++. |+-. .. |....|...+.+-+..+..+.|+|...-+. | ..
T Consensus 180 ~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~---------~---~~ 247 (301)
T PRK07259 180 EAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGIS---------S---AE 247 (301)
T ss_pred HcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCC---------C---HH
Confidence 488765 211 2210 10 111122233333334444589998755433 2 35
Q ss_pred HHHHHHHcCCceeeeccc
Q 010627 312 DVANAVLDGTDCVMLSGE 329 (505)
Q Consensus 312 Dv~nav~~G~D~imLs~E 329 (505)
|+..++..|+|+|++..-
T Consensus 248 da~~~l~aGAd~V~igr~ 265 (301)
T PRK07259 248 DAIEFIMAGASAVQVGTA 265 (301)
T ss_pred HHHHHHHcCCCceeEcHH
Confidence 667778899999999643
No 131
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=82.98 E-value=27 Score=36.84 Aligned_cols=204 Identities=14% Similarity=0.125 Sum_probs=113.2
Q ss_pred CCCCcccCCccccCCCCChhcHHHHHhcccccCCCEEEE-cCCCCh------hHHHHHHHHHhccCCCceEEEEecCHHH
Q 010627 169 ERKNVNLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIAL-SFVRKG------SDLVGVRKLLGGHAKNILLMSKVENQEG 241 (505)
Q Consensus 169 s~Kgvnlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~-sfV~sa------~dv~~v~~~l~~~~~~~~IiakIEt~~a 241 (505)
.|-|..-|+.. ++..++..|.+...+.|++.|=+ ||+ ++ .|-.++.+.+... ....+.+-+=+.++
T Consensus 54 lRDG~Q~~g~~-----~s~e~Ki~ia~~L~~~GV~~IEvGs~v-spk~vPqmad~~ev~~~i~~~-~~~~~~~l~~n~~d 126 (347)
T PLN02746 54 PRDGLQNEKNI-----VPTSVKVELIQRLVSSGLPVVEATSFV-SPKWVPQLADAKDVMAAVRNL-EGARFPVLTPNLKG 126 (347)
T ss_pred CCccCcCCCCC-----CCHHHHHHHHHHHHHcCCCEEEECCCc-CcccccccccHHHHHHHHHhc-cCCceeEEcCCHHH
Confidence 44555556653 36666666657777799999855 566 43 2333333333321 12222222325555
Q ss_pred HhcHHHHHhcCCeeEE--ecCcccC----cCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhh-hcCCCCChHH---HH
Q 010627 242 VANFDDILANSDAFMV--ARGDLGM----EIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESM-IKSPRPTRAE---AT 311 (505)
Q Consensus 242 v~nldeI~~~sDgImI--aRgDLg~----e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM-~~~~~ptraE---v~ 311 (505)
++..-+- -.|.|-+ .-.|+=. ....++.....+++++.|+++|..+-.. + || ...|.-+|++ +.
T Consensus 127 ie~A~~~--g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~---i-s~~fg~p~~~r~~~~~l~ 200 (347)
T PLN02746 127 FEAAIAA--GAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGY---V-SCVVGCPIEGPVPPSKVA 200 (347)
T ss_pred HHHHHHc--CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE---E-EeeecCCccCCCCHHHHH
Confidence 5543321 2465443 3333221 1334677777789999999999988411 0 11 1234444444 44
Q ss_pred HHHH-HHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhc-ccCchhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcC
Q 010627 312 DVAN-AVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAES-TLDYGDVFKRVMQHSPVPMSPLESLASSAVRTANSAR 389 (505)
Q Consensus 312 Dv~n-av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~-~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~ 389 (505)
+++. +...|+|.|.| .+|.=--.|.++.+.+..+.++.-. .+.+ +++. + --+|.+-..+|...+
T Consensus 201 ~~~~~~~~~Gad~I~l-~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~--H~Hn---------d--~GlA~AN~lAA~~aG 266 (347)
T PLN02746 201 YVAKELYDMGCYEISL-GDTIGVGTPGTVVPMLEAVMAVVPVDKLAV--HFHD---------T--YGQALANILVSLQMG 266 (347)
T ss_pred HHHHHHHHcCCCEEEe-cCCcCCcCHHHHHHHHHHHHHhCCCCeEEE--EECC---------C--CChHHHHHHHHHHhC
Confidence 4443 77889999999 5888788899999998888644211 0111 1110 1 124555566677888
Q ss_pred CcEEEEEcCCc
Q 010627 390 ATLILVLTRGG 400 (505)
Q Consensus 390 a~~Ivv~T~sG 400 (505)
++. |=-|-.|
T Consensus 267 a~~-vd~sv~G 276 (347)
T PLN02746 267 IST-VDSSVAG 276 (347)
T ss_pred CCE-EEEeccc
Confidence 883 4444444
No 132
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=82.93 E-value=22 Score=33.81 Aligned_cols=129 Identities=17% Similarity=0.147 Sum_probs=69.7
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccC-------cCC
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGM-------EIP 267 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~-------e~~ 267 (505)
+.+.+.|+|+|.++.-. .....++... +....+-.-.-|.+-+ ......-+|.|.+++-.=+. ..+
T Consensus 75 ~~a~~~gad~vh~~~~~--~~~~~~~~~~---~~~~~~g~~~~t~~e~--~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g 147 (212)
T PRK00043 75 DLALAVGADGVHLGQDD--LPVADARALL---GPDAIIGLSTHTLEEA--AAALAAGADYVGVGPIFPTPTKKDAKAPQG 147 (212)
T ss_pred HHHHHcCCCEEecCccc--CCHHHHHHHc---CCCCEEEEeCCCHHHH--HHHhHcCCCEEEECCccCCCCCCCCCCCCC
Confidence 55678899999887532 2234444332 2223333333332221 11112236999886432221 112
Q ss_pred chhHHHHHHHHHHHHHHcC-CCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHH
Q 010627 268 IEKIFLAQKVMIYKCNIQG-KPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQI 346 (505)
Q Consensus 268 ~~~v~~~qk~Ii~~~~~~g-kpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i 346 (505)
++.+.. +. .... .|++.+.-+ +. .++..+...|+|++.+.+.-..-..|.++++.+.+.
T Consensus 148 ~~~~~~----~~---~~~~~~~v~a~GGI----------~~---~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~~ 207 (212)
T PRK00043 148 LEGLRE----IR---AAVGDIPIVAIGGI----------TP---ENAPEVLEAGADGVAVVSAITGAEDPEAAARALLAA 207 (212)
T ss_pred HHHHHH----HH---HhcCCCCEEEECCc----------CH---HHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHHH
Confidence 222222 22 2223 888865542 22 456677788999999976554456799998888776
Q ss_pred HHHH
Q 010627 347 CVEA 350 (505)
Q Consensus 347 ~~~a 350 (505)
+.++
T Consensus 208 ~~~~ 211 (212)
T PRK00043 208 FRAA 211 (212)
T ss_pred Hhhc
Confidence 6543
No 133
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=82.92 E-value=22 Score=40.65 Aligned_cols=153 Identities=13% Similarity=0.123 Sum_probs=96.6
Q ss_pred hhcHHHHHhcccccCCCEEEE--cCCCChhHHHHHHHHHhccCCCceEEEEecC--HHHHhcHHHHHhcCCeeEEecCcc
Q 010627 187 EKDKEDILKWGIPNQIDMIAL--SFVRKGSDLVGVRKLLGGHAKNILLMSKVEN--QEGVANFDDILANSDAFMVARGDL 262 (505)
Q Consensus 187 e~D~~di~~~al~~g~d~V~~--sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt--~~av~nldeI~~~sDgImIaRgDL 262 (505)
+...+.+ +...+.|++.|-+ |-.+.++.+..+++.|.+.|.+++++|-|-- ..|+ +-++..|.|=|-||.+
T Consensus 110 eatv~Qi-~~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al----~a~~~vdkiRINPGN~ 184 (733)
T PLN02925 110 EATVDQV-MRIADKGADIVRITVQGKKEADACFEIKNTLVQKGYNIPLVADIHFAPSVAL----RVAECFDKIRVNPGNF 184 (733)
T ss_pred HHHHHHH-HHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCHHHHH----HHHHhcCCeEECCccc
Confidence 4445556 5667789998654 4555566666667777777889999999843 3333 2333489999999999
Q ss_pred cCcC---------------CchhHHHHHHHHHHHHHHcCCCeEEehh-------hhHhhhcCCCCChHH-----HHHHHH
Q 010627 263 GMEI---------------PIEKIFLAQKVMIYKCNIQGKPVVTATQ-------MLESMIKSPRPTRAE-----ATDVAN 315 (505)
Q Consensus 263 g~e~---------------~~~~v~~~qk~Ii~~~~~~gkpvi~ATq-------mLeSM~~~~~ptraE-----v~Dv~n 315 (505)
+-.- .++++..--..++++|+++|+|+=+.++ +|+. --+|..- ..-+.-
T Consensus 185 ~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~----yGdtp~gmVeSAle~~~i 260 (733)
T PLN02925 185 ADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSY----YGDSPRGMVESAFEFARI 260 (733)
T ss_pred CCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHH----hCCChHHHHHHHHHHHHH
Confidence 8762 1123333445799999999999844442 2221 1122111 122333
Q ss_pred HHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHh
Q 010627 316 AVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAE 351 (505)
Q Consensus 316 av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE 351 (505)
+-..|++=+++|--.+ .|...|...+.++.+-+
T Consensus 261 ~e~~~f~diviS~KsS---n~~~~V~AyR~La~~L~ 293 (733)
T PLN02925 261 CRKLDYHNFVFSMKAS---NPVVMVQAYRLLVAEMY 293 (733)
T ss_pred HHHCCCCcEEEEEEcC---ChHHHHHHHHHHHHHHH
Confidence 6678999999986554 46666666666665543
No 134
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=82.60 E-value=19 Score=34.78 Aligned_cols=126 Identities=17% Similarity=0.204 Sum_probs=70.1
Q ss_pred HHHhcccccCCCEEEEcCCCC-hhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc-CCeeEEecCcccCcCCch
Q 010627 192 DILKWGIPNQIDMIALSFVRK-GSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN-SDAFMVARGDLGMEIPIE 269 (505)
Q Consensus 192 di~~~al~~g~d~V~~sfV~s-a~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-sDgImIaRgDLg~e~~~~ 269 (505)
.+ +.+.+.|+|+|.+.-..- .++++++.+.....| +..++-+-+.+- +.++.+. .|.+.+..-|.... +.
T Consensus 86 ~v-~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g--~~~~v~v~~~~e---~~~~~~~g~~~i~~t~~~~~~~-~~- 157 (217)
T cd00331 86 QI-YEARAAGADAVLLIVAALDDEQLKELYELARELG--MEVLVEVHDEEE---LERALALGAKIIGINNRDLKTF-EV- 157 (217)
T ss_pred HH-HHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcC--CeEEEEECCHHH---HHHHHHcCCCEEEEeCCCcccc-Cc-
Confidence 35 667889999998543222 255555544444333 344444544433 4444443 58888875554322 21
Q ss_pred hHHHHHHHHHHHHHH--cCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHH
Q 010627 270 KIFLAQKVMIYKCNI--QGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVR 341 (505)
Q Consensus 270 ~v~~~qk~Ii~~~~~--~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~ 341 (505)
++ ..+.+.++. .+.|++...-+ =+. .|+..+...|+|++++..--.....|.++++
T Consensus 158 ~~----~~~~~l~~~~~~~~pvia~gGI---------~s~---edi~~~~~~Ga~gvivGsai~~~~~p~~~~~ 215 (217)
T cd00331 158 DL----NTTERLAPLIPKDVILVSESGI---------STP---EDVKRLAEAGADAVLIGESLMRAPDPGAALR 215 (217)
T ss_pred CH----HHHHHHHHhCCCCCEEEEEcCC---------CCH---HHHHHHHHcCCCEEEECHHHcCCCCHHHHHH
Confidence 22 222333333 46788754432 223 4556666679999999766555566777665
No 135
>PRK06852 aldolase; Validated
Probab=82.51 E-value=29 Score=35.96 Aligned_cols=110 Identities=17% Similarity=0.018 Sum_probs=62.1
Q ss_pred CCChHHHHHHHHHHHcC------CceeeecccCCCCCCHHHHHHHHHHHHHHHhcc-cCc-hhhHHhhhhCCCCCCCchh
Q 010627 304 RPTRAEATDVANAVLDG------TDCVMLSGETAAGAYPEVAVRTMAQICVEAEST-LDY-GDVFKRVMQHSPVPMSPLE 375 (505)
Q Consensus 304 ~ptraEv~Dv~nav~~G------~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~-~~~-~~~~~~~~~~~~~~~~~~~ 375 (505)
.|...-+++|-.|+..| +|||..+-=-- +.+=-+.++-+.+++++++++ +.- -..|.+-.. .... ...+
T Consensus 112 ~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~G-s~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~-i~~~-~~~~ 188 (304)
T PRK06852 112 DPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLG-SEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKA-VKDE-KDPH 188 (304)
T ss_pred CccccceecHHHHHhcCCccCCCceEEEEEEecC-CHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcc-cCCC-ccHH
Confidence 35555568899999999 88988753222 334467888888999999875 110 011221100 0011 1123
Q ss_pred hHHHHHHHHHHhcCCcEEEEEcCC-----c--hHHHHHHhhCCCCcEEEE
Q 010627 376 SLASSAVRTANSARATLILVLTRG-----G--STAKLVAKYRPGMPILSV 418 (505)
Q Consensus 376 ~ia~~av~~a~~~~a~~Ivv~T~s-----G--~ta~~ls~~RP~~pIiav 418 (505)
+...|+++|.+++|+.|=+. .+ | .+-+.+...-.++||+.-
T Consensus 189 -~ia~aaRiaaELGADIVKv~-y~~~~~~g~~e~f~~vv~~~g~vpVvia 236 (304)
T PRK06852 189 -LIAGAAGVAACLGADFVKVN-YPKKEGANPAELFKEAVLAAGRTKVVCA 236 (304)
T ss_pred -HHHHHHHHHHHHcCCEEEec-CCCcCCCCCHHHHHHHHHhCCCCcEEEe
Confidence 45556699999999955332 23 3 344444444423565444
No 136
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=82.49 E-value=30 Score=38.62 Aligned_cols=172 Identities=15% Similarity=0.148 Sum_probs=109.6
Q ss_pred CCCcccCCccccCCCCChhcHHHHHhcccccCCCEEEEcC-CCChhHHHHHHHHHhccCCCceEEEEec-CHHHH-----
Q 010627 170 RKNVNLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSF-VRKGSDLVGVRKLLGGHAKNILLMSKVE-NQEGV----- 242 (505)
Q Consensus 170 ~Kgvnlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~sf-V~sa~dv~~v~~~l~~~~~~~~IiakIE-t~~av----- 242 (505)
|-|-.-|+. .+|..++..|.+...+.|+|.|=+.| .-|+.|...++.+....-.+..|.+..= ....+
T Consensus 10 RDG~Q~~g~-----~~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d 84 (526)
T TIGR00977 10 RDGAQREGV-----SFSLEDKIRIAERLDDLGIHYIEGGWPGANPKDVQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEED 84 (526)
T ss_pred CCCCCCCCC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchH
Confidence 444455555 34778888886777779999997754 4568889888887643223456666552 12221
Q ss_pred hcHHHHHhc-CCeeEE--ecCcccCc----CCchhHHHHHHHHHHHHHHcCCCeE-EehhhhHhhhcCCCCChHHHHHHH
Q 010627 243 ANFDDILAN-SDAFMV--ARGDLGME----IPIEKIFLAQKVMIYKCNIQGKPVV-TATQMLESMIKSPRPTRAEATDVA 314 (505)
Q Consensus 243 ~nldeI~~~-sDgImI--aRgDLg~e----~~~~~v~~~qk~Ii~~~~~~gkpvi-~ATqmLeSM~~~~~ptraEv~Dv~ 314 (505)
..++..+.. .+.|.+ .-.|+-.+ ...++........++.++.+|..|. .++.+.+.. +-+...+.++.
T Consensus 85 ~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~----r~~~~~l~~~~ 160 (526)
T TIGR00977 85 KMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGY----KANPEYALATL 160 (526)
T ss_pred HHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecc----cCCHHHHHHHH
Confidence 123444433 354443 33343332 2346777777888999999999874 455543321 22345566666
Q ss_pred HH-HHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHh
Q 010627 315 NA-VLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAE 351 (505)
Q Consensus 315 na-v~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE 351 (505)
.+ ...|+|.+.|. +|.=+..|.+.-+.+..+.+...
T Consensus 161 ~~a~~aGad~i~i~-DTvG~~~P~~v~~li~~l~~~~~ 197 (526)
T TIGR00977 161 ATAQQAGADWLVLC-DTNGGTLPHEISEITTKVKRSLK 197 (526)
T ss_pred HHHHhCCCCeEEEe-cCCCCcCHHHHHHHHHHHHHhCC
Confidence 64 55699999995 99889999999999988876543
No 137
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=82.47 E-value=55 Score=34.33 Aligned_cols=148 Identities=16% Similarity=0.120 Sum_probs=91.3
Q ss_pred CChhcHHHHHhcccccCCCEEEE---------cCC-C--ChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHH---H
Q 010627 185 LTEKDKEDILKWGIPNQIDMIAL---------SFV-R--KGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDI---L 249 (505)
Q Consensus 185 lte~D~~di~~~al~~g~d~V~~---------sfV-~--sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI---~ 249 (505)
++..++..+.+...+.|+|.|=+ ||. . ...+.+.++.+... ..+.++.+.+-- +.-+.+++ .
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~-~~~~~~~~ll~p--g~~~~~dl~~a~ 98 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEV-VKQAKIAALLLP--GIGTVDDLKMAY 98 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHh-CCCCEEEEEecc--CcccHHHHHHHH
Confidence 47777777756667789999877 343 1 11233344433322 234566554421 12223333 2
Q ss_pred hc-CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHH-HHcCCceeeec
Q 010627 250 AN-SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANA-VLDGTDCVMLS 327 (505)
Q Consensus 250 ~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~na-v~~G~D~imLs 327 (505)
+. .|.|-|+= ...+. ..-++.++.++++|..+.+. +. ..+..+.+++.+.+.. ...|+|++.+
T Consensus 99 ~~gvd~iri~~-------~~~e~-~~~~~~i~~ak~~G~~v~~~--l~----~a~~~~~e~l~~~a~~~~~~Ga~~i~i- 163 (337)
T PRK08195 99 DAGVRVVRVAT-------HCTEA-DVSEQHIGLARELGMDTVGF--LM----MSHMAPPEKLAEQAKLMESYGAQCVYV- 163 (337)
T ss_pred HcCCCEEEEEE-------ecchH-HHHHHHHHHHHHCCCeEEEE--EE----eccCCCHHHHHHHHHHHHhCCCCEEEe-
Confidence 22 47766641 22222 24588999999999987653 22 2246678888887775 5569999998
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHH
Q 010627 328 GETAAGAYPEVAVRTMAQICVEA 350 (505)
Q Consensus 328 ~Eta~G~yP~~~V~~m~~i~~~a 350 (505)
.+|+=.-+|.++-+.++.+-++.
T Consensus 164 ~DT~G~~~P~~v~~~v~~l~~~l 186 (337)
T PRK08195 164 VDSAGALLPEDVRDRVRALRAAL 186 (337)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc
Confidence 68988899998888887776554
No 138
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=82.21 E-value=26 Score=36.84 Aligned_cols=106 Identities=14% Similarity=0.131 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010627 213 GSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTA 292 (505)
Q Consensus 213 a~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~A 292 (505)
.+.++.++++.++. .+.+++-+-+++.++-+. +.+|.+-||-.++.. ..+++++.+.||||++.
T Consensus 143 ~~gL~~L~~~~~~~--Gl~v~tev~d~~~~~~l~---~~vd~lqIgAr~~~N-----------~~LL~~va~~~kPViLk 206 (335)
T PRK08673 143 EEGLKLLAEAREET--GLPIVTEVMDPRDVELVA---EYVDILQIGARNMQN-----------FDLLKEVGKTNKPVLLK 206 (335)
T ss_pred HHHHHHHHHHHHHc--CCcEEEeeCCHHHHHHHH---HhCCeEEECcccccC-----------HHHHHHHHcCCCcEEEe
Confidence 44556666666554 467888887776665554 458999999776642 44566777899999997
Q ss_pred hhhhHhhhcCCCCChHHHHHHHHHHH-cCCceeeeccc-C-CCCCCHHHHHHH
Q 010627 293 TQMLESMIKSPRPTRAEATDVANAVL-DGTDCVMLSGE-T-AAGAYPEVAVRT 342 (505)
Q Consensus 293 TqmLeSM~~~~~ptraEv~Dv~nav~-~G~D~imLs~E-t-a~G~yP~~~V~~ 342 (505)
|.|- .|-.|+...+..+. .|.+-++|..- + ..-.||-+.+.+
T Consensus 207 ~G~~--------~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl 251 (335)
T PRK08673 207 RGMS--------ATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDL 251 (335)
T ss_pred CCCC--------CCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhH
Confidence 7654 45567777777664 67876777432 3 444677666654
No 139
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=81.96 E-value=24 Score=37.29 Aligned_cols=101 Identities=19% Similarity=0.209 Sum_probs=69.0
Q ss_pred HHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehh
Q 010627 215 DLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQ 294 (505)
Q Consensus 215 dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATq 294 (505)
.++.+++...+. .+.+++-+-+.+.++-+.+ .+|.+-||-+++.. -.+++++.+.||||++.|.
T Consensus 153 gl~~L~~~~~e~--Gl~~~tev~d~~~v~~~~~---~~d~lqIga~~~~n-----------~~LL~~va~t~kPVllk~G 216 (352)
T PRK13396 153 ALELLAAAREAT--GLGIITEVMDAADLEKIAE---VADVIQVGARNMQN-----------FSLLKKVGAQDKPVLLKRG 216 (352)
T ss_pred HHHHHHHHHHHc--CCcEEEeeCCHHHHHHHHh---hCCeEEECcccccC-----------HHHHHHHHccCCeEEEeCC
Confidence 344455544443 4788898888777666555 47999999777642 2347788889999999766
Q ss_pred hhHhhhcCCCCChHHHHHHHHHHHc-CCceeeeccc---CCCCCCHHHH
Q 010627 295 MLESMIKSPRPTRAEATDVANAVLD-GTDCVMLSGE---TAAGAYPEVA 339 (505)
Q Consensus 295 mLeSM~~~~~ptraEv~Dv~nav~~-G~D~imLs~E---ta~G~yP~~~ 339 (505)
|. +|-.|+...+..+.. |.+-++|..- |-...||.+.
T Consensus 217 ~~--------~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~ 257 (352)
T PRK13396 217 MA--------ATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNT 257 (352)
T ss_pred CC--------CCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCC
Confidence 54 577888888887764 7777777543 3334677433
No 140
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=81.82 E-value=6.7 Score=38.29 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=29.8
Q ss_pred HHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeee
Q 010627 275 QKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 326 (505)
Q Consensus 275 qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imL 326 (505)
-..+++.|+++|.|++- --.--+++..|...|+|.+=+
T Consensus 90 ~~~v~~~~~~~~i~~iP--------------G~~TptEi~~A~~~Ga~~vKl 127 (204)
T TIGR01182 90 TPELAKHAQDHGIPIIP--------------GVATPSEIMLALELGITALKL 127 (204)
T ss_pred CHHHHHHHHHcCCcEEC--------------CCCCHHHHHHHHHCCCCEEEE
Confidence 45899999999999872 222345678899999999887
No 141
>PLN02321 2-isopropylmalate synthase
Probab=81.70 E-value=60 Score=37.09 Aligned_cols=159 Identities=15% Similarity=0.172 Sum_probs=100.6
Q ss_pred CChhcHHHHHhcccccCCCEEEEcC-CCChhHHHHHHHHHhccCCCc---eEEEEec-----CHHHHhcHHHHHhcC---
Q 010627 185 LTEKDKEDILKWGIPNQIDMIALSF-VRKGSDLVGVRKLLGGHAKNI---LLMSKVE-----NQEGVANFDDILANS--- 252 (505)
Q Consensus 185 lte~D~~di~~~al~~g~d~V~~sf-V~sa~dv~~v~~~l~~~~~~~---~IiakIE-----t~~av~nldeI~~~s--- 252 (505)
+|..++..|.+...+.|+|.|=+.| .-|+.|.+.++.+.......+ ..+++|- +.+.++..-+=+.-+
T Consensus 105 ~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~al~~a~~~ 184 (632)
T PLN02321 105 LTSKEKLDIARQLAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEAVKHAKRP 184 (632)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHHhcCCCCC
Confidence 5777777776777789999998776 677788888777654321111 1223322 334443322211112
Q ss_pred -CeeEEecCcccC----cCCchhHHHHHHHHHHHHHHcCCC-eEEehhhhHhhhcCCCCChHHHHHHHH-HHHcCCceee
Q 010627 253 -DAFMVARGDLGM----EIPIEKIFLAQKVMIYKCNIQGKP-VVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVM 325 (505)
Q Consensus 253 -DgImIaRgDLg~----e~~~~~v~~~qk~Ii~~~~~~gkp-vi~ATqmLeSM~~~~~ptraEv~Dv~n-av~~G~D~im 325 (505)
=.++++-.|+-. ....+++...-+.+++.|+.+|.. |.+.. ....+-.+..+.+++. ++..|+|.|.
T Consensus 185 ~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~------EDa~rtd~d~l~~~~~~a~~aGa~~I~ 258 (632)
T PLN02321 185 RIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSP------EDAGRSDPEFLYRILGEVIKAGATTLN 258 (632)
T ss_pred EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEec------ccCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 135555555532 234567888889999999999985 54432 2222333455555555 5667999999
Q ss_pred ecccCCCCCCHHHHHHHHHHHHHHH
Q 010627 326 LSGETAAGAYPEVAVRTMAQICVEA 350 (505)
Q Consensus 326 Ls~Eta~G~yP~~~V~~m~~i~~~a 350 (505)
| .+|.=...|.+.-+.+..+.+..
T Consensus 259 L-~DTvG~~~P~~v~~li~~l~~~~ 282 (632)
T PLN02321 259 I-PDTVGYTLPSEFGQLIADIKANT 282 (632)
T ss_pred e-cccccCCCHHHHHHHHHHHHHhc
Confidence 9 68888899999998888887553
No 142
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=81.62 E-value=17 Score=36.53 Aligned_cols=116 Identities=12% Similarity=0.111 Sum_probs=69.9
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCC-eeEE-ecCcccCcCCchhHH
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSD-AFMV-ARGDLGMEIPIEKIF 272 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sD-gImI-aRgDLg~e~~~~~v~ 272 (505)
+.+.+.|+|++++|..- .++..++.+.+++.|-+.-++.-=.| ..+++.+|++.+| .|++ ++...+-+- ..+.
T Consensus 109 ~~~~~aGvdgviipDlp-~ee~~~~~~~~~~~gl~~i~lv~P~T--~~eri~~i~~~~~gfiy~vs~~G~TG~~--~~~~ 183 (256)
T TIGR00262 109 AKCKEVGVDGVLVADLP-LEESGDLVEAAKKHGVKPIFLVAPNA--DDERLKQIAEKSQGFVYLVSRAGVTGAR--NRAA 183 (256)
T ss_pred HHHHHcCCCEEEECCCC-hHHHHHHHHHHHHCCCcEEEEECCCC--CHHHHHHHHHhCCCCEEEEECCCCCCCc--ccCC
Confidence 66688899999999864 47888888888887765433332233 3678899999998 4443 432222110 0111
Q ss_pred HHHHHHHHHHHH-cCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 273 LAQKVMIYKCNI-QGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 273 ~~qk~Ii~~~~~-~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
.-....++..++ .++|+++-.. .=|.. ++..+...|+|+++..
T Consensus 184 ~~~~~~i~~lr~~~~~pi~vgfG---------I~~~e---~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 184 SALNELVKRLKAYSAKPVLVGFG---------ISKPE---QVKQAIDAGADGVIVG 227 (256)
T ss_pred hhHHHHHHHHHhhcCCCEEEeCC---------CCCHH---HHHHHHHcCCCEEEEC
Confidence 122333344443 4678776432 22333 5566777899999884
No 143
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=81.55 E-value=14 Score=35.61 Aligned_cols=146 Identities=18% Similarity=0.239 Sum_probs=86.8
Q ss_pred CCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhc-------HHHHHhc-CCe
Q 010627 183 PTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVAN-------FDDILAN-SDA 254 (505)
Q Consensus 183 ~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~n-------ldeI~~~-sDg 254 (505)
|..++.|.+.+.+.+.+.++|.|.++ +..+..+++.+.. ..+.+-+=+=.|.|-.. .++-++. +|.
T Consensus 12 p~~t~~~i~~~~~~a~~~~~~av~v~----p~~v~~~~~~l~~--~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~GAde 85 (203)
T cd00959 12 PDATEEDIRKLCDEAKEYGFAAVCVN----PCFVPLAREALKG--SGVKVCTVIGFPLGATTTEVKVAEAREAIADGADE 85 (203)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEc----HHHHHHHHHHcCC--CCcEEEEEEecCCCCCcHHHHHHHHHHHHHcCCCE
Confidence 67788888888788888999999988 7788888887754 33555555544444333 3333332 565
Q ss_pred eEEecCcccCcC--CchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHH-HHHcCCceeeecccCC
Q 010627 255 FMVARGDLGMEI--PIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSGETA 331 (505)
Q Consensus 255 ImIaRgDLg~e~--~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~n-av~~G~D~imLs~Eta 331 (505)
+-+- -+.|.-. ..+.+..-.+++.+.|. |+|+.+ ++|. +.-+..++..... ++..|+|.|=-|
T Consensus 86 vdvv-~~~g~~~~~~~~~~~~ei~~v~~~~~--g~~lkv---I~e~----~~l~~~~i~~a~ria~e~GaD~IKTs---- 151 (203)
T cd00959 86 IDMV-INIGALKSGDYEAVYEEIAAVVEACG--GAPLKV---ILET----GLLTDEEIIKACEIAIEAGADFIKTS---- 151 (203)
T ss_pred EEEe-ecHHHHhCCCHHHHHHHHHHHHHhcC--CCeEEE---EEec----CCCCHHHHHHHHHHHHHhCCCEEEcC----
Confidence 5442 1111110 11334444556666664 888744 2322 1113456666555 778899987654
Q ss_pred CCCC----HHHHHHHHHHHHH
Q 010627 332 AGAY----PEVAVRTMAQICV 348 (505)
Q Consensus 332 ~G~y----P~~~V~~m~~i~~ 348 (505)
.|.. -.+.|+.|++++.
T Consensus 152 TG~~~~~at~~~v~~~~~~~~ 172 (203)
T cd00959 152 TGFGPGGATVEDVKLMKEAVG 172 (203)
T ss_pred CCCCCCCCCHHHHHHHHHHhC
Confidence 4443 2377788887765
No 144
>PRK04302 triosephosphate isomerase; Provisional
Probab=81.53 E-value=35 Score=33.36 Aligned_cols=132 Identities=17% Similarity=0.085 Sum_probs=74.3
Q ss_pred hcccccCCCEEEEcCC---CChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc-CCeeEEec-CcccCcCCch
Q 010627 195 KWGIPNQIDMIALSFV---RKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN-SDAFMVAR-GDLGMEIPIE 269 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV---~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-sDgImIaR-gDLg~e~~~~ 269 (505)
+.+.+.|+|+|+++.- ...+++.+..+.+.+.| +..|.-+-+ .+.+..+.+. .|.|-+.+ +-.|...+..
T Consensus 79 ~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~G--l~~I~~v~~---~~~~~~~~~~~~~~I~~~p~~~igt~~~~~ 153 (223)
T PRK04302 79 EAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLG--LESVVCVNN---PETSAAAAALGPDYVAVEPPELIGTGIPVS 153 (223)
T ss_pred HHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCC--CeEEEEcCC---HHHHHHHhcCCCCEEEEeCccccccCCCCC
Confidence 5567789999999986 33445555555554443 444543333 3344444444 35555544 3334333321
Q ss_pred -hHHHHHHHHHHHHHHc--CCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHH
Q 010627 270 -KIFLAQKVMIYKCNIQ--GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTM 343 (505)
Q Consensus 270 -~v~~~qk~Ii~~~~~~--gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m 343 (505)
..+....++++..++. +.|++...- .=+ -.++..+...|+||++..+-...-..|.+.++-+
T Consensus 154 ~~~~~~i~~~~~~ir~~~~~~pvi~Ggg---------I~~---~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~~ 218 (223)
T PRK04302 154 KAKPEVVEDAVEAVKKVNPDVKVLCGAG---------IST---GEDVKAALELGADGVLLASGVVKAKDPEAALRDL 218 (223)
T ss_pred cCCHHHHHHHHHHHHhccCCCEEEEECC---------CCC---HHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHHH
Confidence 2234445566666653 578775321 212 3445566678999999977766666676665543
No 145
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=81.09 E-value=66 Score=32.53 Aligned_cols=170 Identities=16% Similarity=0.178 Sum_probs=98.4
Q ss_pred CCCcccCCccccCCCCChhcHHHHHhcccccCCCEEEEcC-CCChhHHHHHHHHHhccCCCceEEEEecC-HHHHh----
Q 010627 170 RKNVNLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSF-VRKGSDLVGVRKLLGGHAKNILLMSKVEN-QEGVA---- 243 (505)
Q Consensus 170 ~Kgvnlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~sf-V~sa~dv~~v~~~l~~~~~~~~IiakIEt-~~av~---- 243 (505)
|-|-..++. .++..++..+.+...+.|+|.|=+.| .-++.++..++.+....-++..+.+..-. ..++.
T Consensus 7 RDG~Q~~~~-----~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (273)
T cd07941 7 RDGTQGEGI-----SFSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEED 81 (273)
T ss_pred CCcCCCCCC-----CCCHHHHHHHHHHHHHcCCCEEEecCCcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCCccch
Confidence 444454544 34677777776777889999997744 34677777776544322123444443211 11121
Q ss_pred -cHHHHHhc-CCeeEE--ecCccc----CcCCchhHHHHHHHHHHHHHHcCCCeEEe-hhhhHhhhcCCCCChHHHHHHH
Q 010627 244 -NFDDILAN-SDAFMV--ARGDLG----MEIPIEKIFLAQKVMIYKCNIQGKPVVTA-TQMLESMIKSPRPTRAEATDVA 314 (505)
Q Consensus 244 -nldeI~~~-sDgImI--aRgDLg----~e~~~~~v~~~qk~Ii~~~~~~gkpvi~A-TqmLeSM~~~~~ptraEv~Dv~ 314 (505)
.++..++. .|.|.+ ...|+- .....++.....+..++.++++|..|.+. +.+.+ .++-+...+.+++
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d----~~~~~~~~~~~~~ 157 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFD----GYKANPEYALATL 157 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccc----cCCCCHHHHHHHH
Confidence 23333333 365544 222321 11233556666688999999999988652 22212 2222344555555
Q ss_pred H-HHHcCCceeeecccCCCCCCHHHHHHHHHHHHHH
Q 010627 315 N-AVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVE 349 (505)
Q Consensus 315 n-av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~ 349 (505)
. +...|+|.+.| .+|.=...|.+.-+.++.+.++
T Consensus 158 ~~~~~~g~~~i~l-~DT~G~~~P~~v~~lv~~l~~~ 192 (273)
T cd07941 158 KAAAEAGADWLVL-CDTNGGTLPHEIAEIVKEVRER 192 (273)
T ss_pred HHHHhCCCCEEEE-ecCCCCCCHHHHHHHHHHHHHh
Confidence 5 34569999988 6888888999888777776544
No 146
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=80.98 E-value=16 Score=38.14 Aligned_cols=113 Identities=16% Similarity=0.207 Sum_probs=65.6
Q ss_pred HHHHhcccccCCCEEEEcCCCC-hhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCc-
Q 010627 191 EDILKWGIPNQIDMIALSFVRK-GSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPI- 268 (505)
Q Consensus 191 ~di~~~al~~g~d~V~~sfV~s-a~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~- 268 (505)
..+ ...++.++++|.++|=.- .+.++++++ ..++++.++-|.+....+.+ .-+|+|++--.+=|-+.+.
T Consensus 104 ~~~-~~~~~~~~~~v~~~~G~p~~~~i~~l~~------~gi~v~~~v~s~~~A~~a~~--~G~D~iv~qG~eAGGH~g~~ 174 (330)
T PF03060_consen 104 EQL-DVALEAKPDVVSFGFGLPPPEVIERLHA------AGIKVIPQVTSVREARKAAK--AGADAIVAQGPEAGGHRGFE 174 (330)
T ss_dssp HHH-HHHHHS--SEEEEESSSC-HHHHHHHHH------TT-EEEEEESSHHHHHHHHH--TT-SEEEEE-TTSSEE---S
T ss_pred ccc-ccccccceEEEEeecccchHHHHHHHHH------cCCccccccCCHHHHHHhhh--cCCCEEEEeccccCCCCCcc
Confidence 345 677888999999998766 444444443 24799999988766543322 2379988843333333331
Q ss_pred -hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 269 -EKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 269 -~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
+.+..+..++.+ ...+|||.|.-+- .-.+++.++..|+|++.+.
T Consensus 175 ~~~~~~L~~~v~~---~~~iPViaAGGI~------------dg~~iaaal~lGA~gV~~G 219 (330)
T PF03060_consen 175 VGSTFSLLPQVRD---AVDIPVIAAGGIA------------DGRGIAAALALGADGVQMG 219 (330)
T ss_dssp SG-HHHHHHHHHH---H-SS-EEEESS--------------SHHHHHHHHHCT-SEEEES
T ss_pred ccceeeHHHHHhh---hcCCcEEEecCcC------------CHHHHHHHHHcCCCEeecC
Confidence 124444444444 3449999998765 3567899999999999983
No 147
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=80.89 E-value=24 Score=34.75 Aligned_cols=150 Identities=15% Similarity=0.085 Sum_probs=88.9
Q ss_pred CCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc-----CCeeEE
Q 010627 183 PTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN-----SDAFMV 257 (505)
Q Consensus 183 ~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-----sDgImI 257 (505)
|..|+.|...+.+.|.+.|+..|+++ +..+..+++.|. +..+++.+=|--|.|....+.-+.. .||.--
T Consensus 17 p~~t~~~i~~~~~~A~~~~~~avcv~----p~~v~~a~~~l~--~~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA~E 90 (221)
T PRK00507 17 PEATEEDIDKLCDEAKEYGFASVCVN----PSYVKLAAELLK--GSDVKVCTVIGFPLGANTTAVKAFEAKDAIANGADE 90 (221)
T ss_pred CCCCHHHHHHHHHHHHHhCCeEEEEC----HHHHHHHHHHhC--CCCCeEEEEecccCCCChHHHHHHHHHHHHHcCCce
Confidence 67789998888889999999999988 788999999884 4568888888777776544433321 122100
Q ss_pred ecCcccCcCCc---hhHHHHHHHHHHHHHH-cCCCeEEehhhhHhhhcCCCCChHHHHHHHH-HHHcCCceeeecccCCC
Q 010627 258 ARGDLGMEIPI---EKIFLAQKVMIYKCNI-QGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSGETAA 332 (505)
Q Consensus 258 aRgDLg~e~~~---~~v~~~qk~Ii~~~~~-~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~n-av~~G~D~imLs~Eta~ 332 (505)
=|+-+.++. .++..+.+.|...... .++++=+ + ++.+.-+..|+.++.. ++..|+|.|--|.=-+.
T Consensus 91 --iD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKv---I----lEt~~L~~e~i~~a~~~~~~agadfIKTsTG~~~ 161 (221)
T PRK00507 91 --IDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKV---I----IETCLLTDEEKVKACEIAKEAGADFVKTSTGFST 161 (221)
T ss_pred --EeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEE---E----eecCcCCHHHHHHHHHHHHHhCCCEEEcCCCCCC
Confidence 012222221 1333444444333332 3444311 1 2445667788888777 77789995544321111
Q ss_pred CCCHHHHHHHHHHHH
Q 010627 333 GAYPEVAVRTMAQIC 347 (505)
Q Consensus 333 G~yP~~~V~~m~~i~ 347 (505)
|---.+.|+.|++.+
T Consensus 162 ~gat~~~v~~m~~~~ 176 (221)
T PRK00507 162 GGATVEDVKLMRETV 176 (221)
T ss_pred CCCCHHHHHHHHHHh
Confidence 223367888876654
No 148
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=80.73 E-value=7.6 Score=41.63 Aligned_cols=126 Identities=21% Similarity=0.210 Sum_probs=81.8
Q ss_pred ChhcHHHHHhcccccCCCEEEE--cCCCChhHHHHHHHHHhccCCCceEEEE-ecCHHHHhcHHHHHhcCCeeEEecCcc
Q 010627 186 TEKDKEDILKWGIPNQIDMIAL--SFVRKGSDLVGVRKLLGGHAKNILLMSK-VENQEGVANFDDILANSDAFMVARGDL 262 (505)
Q Consensus 186 te~D~~di~~~al~~g~d~V~~--sfV~sa~dv~~v~~~l~~~~~~~~Iiak-IEt~~av~nldeI~~~sDgImIaRgDL 262 (505)
-+.|+..+ ....+.|+|+|++ |.=+|--+++.++ |+++.-.+..||+- +=|.+=.+|| |.+-+||+-||=|-=
T Consensus 249 re~dK~rl-~ll~~aGvdvviLDSSqGnS~~qiemik-~iK~~yP~l~ViaGNVVT~~qa~nL--I~aGaDgLrVGMGsG 324 (503)
T KOG2550|consen 249 RDDDKERL-DLLVQAGVDVVILDSSQGNSIYQLEMIK-YIKETYPDLQIIAGNVVTKEQAANL--IAAGADGLRVGMGSG 324 (503)
T ss_pred ccchhHHH-HHhhhcCCcEEEEecCCCcchhHHHHHH-HHHhhCCCceeeccceeeHHHHHHH--HHccCceeEeccccC
Confidence 45677777 7788899999987 4444555555554 67766777777763 2333333333 455589999976644
Q ss_pred cCcCCchh--H----HHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 263 GMEIPIEK--I----FLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 263 g~e~~~~~--v----~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
++-+-.+. + ..+--++.+.|++.|.|||--. --.-+.+++.|+..|++.+|+.
T Consensus 325 SiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviADG------------Giq~~Ghi~KAl~lGAstVMmG 383 (503)
T KOG2550|consen 325 SICITQKVMACGRPQGTAVYKVAEFANQFGVPCIADG------------GIQNVGHVVKALGLGASTVMMG 383 (503)
T ss_pred ceeeeceeeeccCCcccchhhHHHHHHhcCCceeecC------------CcCccchhHhhhhcCchhheec
Confidence 43333221 1 1233467888999999998421 1224678899999999999984
No 149
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=80.32 E-value=3.5 Score=43.52 Aligned_cols=52 Identities=17% Similarity=0.349 Sum_probs=44.1
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHH
Q 010627 15 PKTKIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTA 66 (505)
Q Consensus 15 r~tkIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~ 66 (505)
.+-.+-+.+||.-++.+..++|+++|+|++=|..+||..+...+.++++|+.
T Consensus 95 ~~l~V~aavg~~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~ 146 (352)
T PF00478_consen 95 GRLLVAAAVGTRDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKK 146 (352)
T ss_dssp SCBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHH
T ss_pred ccceEEEEecCCHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHh
Confidence 4567788899998899999999999999999999999999988888887763
No 150
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=80.15 E-value=12 Score=39.25 Aligned_cols=144 Identities=14% Similarity=0.101 Sum_probs=94.4
Q ss_pred cHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCc
Q 010627 189 DKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPI 268 (505)
Q Consensus 189 D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~ 268 (505)
..+.| +...+.|+|.|-+. |.+.++.+.++.+-+ +.+++++|-|-- +--..+.++.+-.|.+=|.||.+|-
T Consensus 36 tv~QI-~~L~~aGceiVRva-vp~~~~A~al~~I~~--~~~iPlVADIHF-d~~lAl~a~~~g~dkiRINPGNig~---- 106 (346)
T TIGR00612 36 TVAQI-RALEEAGCDIVRVT-VPDRESAAAFEAIKE--GTNVPLVADIHF-DYRLAALAMAKGVAKVRINPGNIGF---- 106 (346)
T ss_pred HHHHH-HHHHHcCCCEEEEc-CCCHHHHHhHHHHHh--CCCCCEEEeeCC-CcHHHHHHHHhccCeEEECCCCCCC----
Confidence 34445 45567899998876 578888888887664 457999999853 1223356666678999999999986
Q ss_pred hhHHHHHHHHHHHHHHcCCCe--EEehhhhHhhh--cCCCCChHHH-----HHHHHHHHcCCceeeecccCCCCCCHHHH
Q 010627 269 EKIFLAQKVMIYKCNIQGKPV--VTATQMLESMI--KSPRPTRAEA-----TDVANAVLDGTDCVMLSGETAAGAYPEVA 339 (505)
Q Consensus 269 ~~v~~~qk~Ii~~~~~~gkpv--i~ATqmLeSM~--~~~~ptraEv-----~Dv~nav~~G~D~imLs~Eta~G~yP~~~ 339 (505)
..--+.++++|+++|+|+ ++-.-=|+.-. +...||..-+ ..+.-+-..|++=+.+|--.+ .+..+
T Consensus 107 ---~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~KsS---dv~~~ 180 (346)
T TIGR00612 107 ---RERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSMKAS---DVAET 180 (346)
T ss_pred ---HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcC---CHHHH
Confidence 355678999999999997 44333333211 2223554322 233345667888888876544 35555
Q ss_pred HHHHHHHH
Q 010627 340 VRTMAQIC 347 (505)
Q Consensus 340 V~~m~~i~ 347 (505)
++.-+.+.
T Consensus 181 i~ayr~la 188 (346)
T TIGR00612 181 VAAYRLLA 188 (346)
T ss_pred HHHHHHHH
Confidence 55544443
No 151
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=79.80 E-value=4.9 Score=39.15 Aligned_cols=103 Identities=12% Similarity=0.164 Sum_probs=66.2
Q ss_pred EcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCc------------ccCcCCchhHHHH
Q 010627 207 LSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGD------------LGMEIPIEKIFLA 274 (505)
Q Consensus 207 ~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgD------------Lg~e~~~~~v~~~ 274 (505)
+=...++++..++-+.|-+.|-+. +=--..|+.+++.++++.+..+.++||-|- .|+++= --|..
T Consensus 9 Vir~~~~~~a~~ia~al~~gGi~~-iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fi--vSP~~ 85 (201)
T PRK06015 9 VLLIDDVEHAVPLARALAAGGLPA-IEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFI--VSPGT 85 (201)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCE-EEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEE--ECCCC
Confidence 334456777777777666555432 222235777787777777665667777651 222211 12245
Q ss_pred HHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeee
Q 010627 275 QKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 326 (505)
Q Consensus 275 qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imL 326 (505)
...+++.|+++|.|++ |--.=.+++..|...|+|.+=+
T Consensus 86 ~~~vi~~a~~~~i~~i--------------PG~~TptEi~~A~~~Ga~~vK~ 123 (201)
T PRK06015 86 TQELLAAANDSDVPLL--------------PGAATPSEVMALREEGYTVLKF 123 (201)
T ss_pred CHHHHHHHHHcCCCEe--------------CCCCCHHHHHHHHHCCCCEEEE
Confidence 5789999999999987 3333346678889999999887
No 152
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=79.76 E-value=38 Score=32.25 Aligned_cols=136 Identities=14% Similarity=0.148 Sum_probs=74.6
Q ss_pred HHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCH-HHHhcHHHHHh-cCCeeEEecCcccCcCCch
Q 010627 192 DILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQ-EGVANFDDILA-NSDAFMVARGDLGMEIPIE 269 (505)
Q Consensus 192 di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~-~av~nldeI~~-~sDgImIaRgDLg~e~~~~ 269 (505)
.+ +.+.++|+|+|.+++..+...+.++.+++++.| +++++-+-++ .-.+.+....+ -+|.+-+.+|-=+-..+..
T Consensus 68 ~~-~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g--~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~ 144 (206)
T TIGR03128 68 EA-EQAFAAGADIVTVLGVADDATIKGAVKAAKKHG--KEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQAKGQN 144 (206)
T ss_pred HH-HHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcC--CEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcccCCCC
Confidence 45 666789999999888776667788888887664 4555543222 12233333344 4798888765222222211
Q ss_pred hHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHH
Q 010627 270 KIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQI 346 (505)
Q Consensus 270 ~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i 346 (505)
.+ +++-+..+....+.+.++- --+.. .+..+...|+|++.+.+.-..-+-|.++++.++++
T Consensus 145 ~~----~~i~~l~~~~~~~~i~v~G---------GI~~~---n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~~~ 205 (206)
T TIGR03128 145 PF----EDLQTILKLVKEARVAVAG---------GINLD---TIPDVIKLGPDIVIVGGAITKAADPAEAARQIRKL 205 (206)
T ss_pred CH----HHHHHHHHhcCCCcEEEEC---------CcCHH---HHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHhh
Confidence 11 1122222222233343111 12333 34456678999999865433335688888877654
No 153
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=79.71 E-value=30 Score=37.29 Aligned_cols=137 Identities=15% Similarity=0.132 Sum_probs=79.7
Q ss_pred HHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEE-EecCHHHHhcHHHHHhc-CCeeEEecCcccCcCCch
Q 010627 192 DILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMS-KVENQEGVANFDDILAN-SDAFMVARGDLGMEIPIE 269 (505)
Q Consensus 192 di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~-sDgImIaRgDLg~e~~~~ 269 (505)
++ +.+.++|+|+|.++.-.+...+.++.+.+++.|.. ++. .+-....++.+.+..+. +|.|-+++|--+...+..
T Consensus 73 ~v-~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~~--~~~g~~s~~t~~e~~~~a~~~GaD~I~~~pg~~~~~~~~~ 149 (430)
T PRK07028 73 EV-EMAAKAGADIVCILGLADDSTIEDAVRAARKYGVR--LMADLINVPDPVKRAVELEELGVDYINVHVGIDQQMLGKD 149 (430)
T ss_pred HH-HHHHHcCCCEEEEecCCChHHHHHHHHHHHHcCCE--EEEEecCCCCHHHHHHHHHhcCCCEEEEEeccchhhcCCC
Confidence 55 77789999999976443434466666666665543 332 12212234555666655 799988876422222221
Q ss_pred hHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHH
Q 010627 270 KIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICV 348 (505)
Q Consensus 270 ~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~ 348 (505)
.+ ...+++. ...+.|+.+..-+ +. ..+..++..|+|++.+..--.--..|.++++.+.+.+.
T Consensus 150 ~~-~~l~~l~---~~~~iPI~a~GGI----------~~---~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~ 211 (430)
T PRK07028 150 PL-ELLKEVS---EEVSIPIAVAGGL----------DA---ETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAID 211 (430)
T ss_pred hH-HHHHHHH---hhCCCcEEEECCC----------CH---HHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHh
Confidence 11 1222222 2346888764421 22 33566778899999987665545578888887777654
No 154
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=79.66 E-value=19 Score=39.56 Aligned_cols=123 Identities=19% Similarity=0.202 Sum_probs=77.9
Q ss_pred ChhcHHHHHhcccccCCCEEEE--cCCCChhHHHHHHHHHhccCCCceEEEE-ecCHHHHhcHHHHHhcCCeeEEecC--
Q 010627 186 TEKDKEDILKWGIPNQIDMIAL--SFVRKGSDLVGVRKLLGGHAKNILLMSK-VENQEGVANFDDILANSDAFMVARG-- 260 (505)
Q Consensus 186 te~D~~di~~~al~~g~d~V~~--sfV~sa~dv~~v~~~l~~~~~~~~Iiak-IEt~~av~nldeI~~~sDgImIaRg-- 260 (505)
.+.+.+-+ +..++.|+|.|++ ++-++ +.+.++.+.+++...++.||+= +-|+++..++.+ .-+|+|=||=|
T Consensus 223 ~~~~~~ra-~~Lv~aGVd~i~~D~a~g~~-~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~--~G~d~i~vg~g~G 298 (475)
T TIGR01303 223 NGDVGGKA-KALLDAGVDVLVIDTAHGHQ-VKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLE--AGANIIKVGVGPG 298 (475)
T ss_pred CccHHHHH-HHHHHhCCCEEEEeCCCCCc-HHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHH--hCCCEEEECCcCC
Confidence 44555555 7778899999875 44333 4444444556555557888887 778877766654 23688876422
Q ss_pred -------cccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 261 -------DLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 261 -------DLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
-.+.-.| -..+--...++++++|+|+|--. -..+ -.|++.|+..|+|++|+.
T Consensus 299 s~~ttr~~~~~g~~---~~~a~~~~~~~~~~~~~~viadG---------gi~~---~~di~kala~GA~~vm~g 357 (475)
T TIGR01303 299 AMCTTRMMTGVGRP---QFSAVLECAAEARKLGGHVWADG---------GVRH---PRDVALALAAGASNVMVG 357 (475)
T ss_pred ccccCccccCCCCc---hHHHHHHHHHHHHHcCCcEEEeC---------CCCC---HHHHHHHHHcCCCEEeec
Confidence 1111111 12333456666788899988422 2222 379999999999999995
No 155
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=79.54 E-value=6.4 Score=38.61 Aligned_cols=107 Identities=11% Similarity=0.116 Sum_probs=67.8
Q ss_pred EEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcc--------cCcCCch--hHHHH
Q 010627 205 IALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDL--------GMEIPIE--KIFLA 274 (505)
Q Consensus 205 V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDL--------g~e~~~~--~v~~~ 274 (505)
|.+=...++++..++-+.+.+.|-+..=|. .-++++++.+.++.+..+.++||-|=- ..+.|.+ -.|.+
T Consensus 18 iaV~r~~~~~~a~~i~~al~~~Gi~~iEit-l~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~ 96 (212)
T PRK05718 18 VPVIVINKLEDAVPLAKALVAGGLPVLEVT-LRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGL 96 (212)
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEEEEe-cCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCCC
Confidence 444456778888887777766655433233 567788888888876655577765511 1111111 12334
Q ss_pred HHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeee
Q 010627 275 QKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 326 (505)
Q Consensus 275 qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imL 326 (505)
-..+++.|++++.|.+=. .-|. +++..+...|+|.+=|
T Consensus 97 ~~~vi~~a~~~~i~~iPG-----------~~Tp---tEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 97 TPPLLKAAQEGPIPLIPG-----------VSTP---SELMLGMELGLRTFKF 134 (212)
T ss_pred CHHHHHHHHHcCCCEeCC-----------CCCH---HHHHHHHHCCCCEEEE
Confidence 458999999999998711 1223 3467888899999988
No 156
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=79.29 E-value=28 Score=34.78 Aligned_cols=133 Identities=13% Similarity=0.069 Sum_probs=77.7
Q ss_pred CCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecC--HHH--------HhcHHHHHhc-
Q 010627 183 PTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVEN--QEG--------VANFDDILAN- 251 (505)
Q Consensus 183 ~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt--~~a--------v~nldeI~~~- 251 (505)
|..+..|.+.+.+.+.+.|+|.|+++ +--+...+.. .+.++.++..+++ +.+ +..+++.++.
T Consensus 31 p~~~~~~~~~~~~~a~~~~~~~v~~~----p~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~G 103 (258)
T TIGR01949 31 PIKGLVDIRKTVNEVAEGGADAVLLH----KGIVRRGHRG---YGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMG 103 (258)
T ss_pred CCCCcCCHHHHHHHHHhcCCCEEEeC----cchhhhcccc---cCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCC
Confidence 44577777766688999999999998 3334443322 2446778888843 221 1335555554
Q ss_pred CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhh-hcCCCCChHHHHH-HHHHHHcCCceeeec
Q 010627 252 SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESM-IKSPRPTRAEATD-VANAVLDGTDCVMLS 327 (505)
Q Consensus 252 sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM-~~~~~ptraEv~D-v~nav~~G~D~imLs 327 (505)
+|++-+- -..+- .+..+....-+++.+.|+++|.|+++- ++-. .+-+..+..++.. ...+...|+|.+-.+
T Consensus 104 a~~v~~~-~~~g~-~~~~~~~~~~~~i~~~~~~~g~~liv~---~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~ 176 (258)
T TIGR01949 104 ADAVSIH-VNVGS-DTEWEQIRDLGMIAEICDDWGVPLLAM---MYPRGPHIDDRDPELVAHAARLGAELGADIVKTP 176 (258)
T ss_pred CCEEEEE-EecCC-chHHHHHHHHHHHHHHHHHcCCCEEEE---EeccCcccccccHHHHHHHHHHHHHHCCCEEecc
Confidence 5655542 11221 122344467788999999999999871 1100 0011122234444 345667899999875
No 157
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=78.61 E-value=16 Score=35.74 Aligned_cols=105 Identities=12% Similarity=0.166 Sum_probs=71.5
Q ss_pred EEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcC-C--eeEEecCc------------ccCcCCch
Q 010627 205 IALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANS-D--AFMVARGD------------LGMEIPIE 269 (505)
Q Consensus 205 V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~s-D--gImIaRgD------------Lg~e~~~~ 269 (505)
+.+=...++++...+.+.|-+.|-+..=|. .-|+.+++.+.++.+.. | .++||-|= .|+++=.
T Consensus 16 i~vir~~~~~~a~~~~~al~~~Gi~~iEit-~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv- 93 (213)
T PRK06552 16 VAVVRGESKEEALKISLAVIKGGIKAIEVT-YTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV- 93 (213)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEEE-CCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE-
Confidence 445556788888888888877664432222 34888898899888764 3 58888762 2222211
Q ss_pred hHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeee
Q 010627 270 KIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 326 (505)
Q Consensus 270 ~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imL 326 (505)
-|.....+++.|+++|.|++- --.-.+++..+...|+|.+-+
T Consensus 94 -sP~~~~~v~~~~~~~~i~~iP--------------G~~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 94 -SPSFNRETAKICNLYQIPYLP--------------GCMTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred -CCCCCHHHHHHHHHcCCCEEC--------------CcCCHHHHHHHHHcCCCEEEE
Confidence 234457899999999999973 222345667788899999998
No 158
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=78.50 E-value=20 Score=36.31 Aligned_cols=116 Identities=16% Similarity=0.166 Sum_probs=72.2
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCc-hhHHH
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPI-EKIFL 273 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~-~~v~~ 273 (505)
+.+.+.|+|++++|=.- .++-.++++.+.+.| +.+|.-|--...-+++..|++.++|.+=.-+=.|+ .|. ..++.
T Consensus 109 ~~~~~aGvdGlIipDLP-~ee~~~~~~~~~~~g--l~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~Gv-TG~~~~~~~ 184 (259)
T PF00290_consen 109 KEAKEAGVDGLIIPDLP-PEESEELREAAKKHG--LDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGV-TGSRTELPD 184 (259)
T ss_dssp HHHHHHTEEEEEETTSB-GGGHHHHHHHHHHTT---EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSS-SSTTSSCHH
T ss_pred HHHHHcCCCEEEEcCCC-hHHHHHHHHHHHHcC--CeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCC-CCCcccchH
Confidence 66778899999999765 466678888887665 44555444445667899999998877654333443 222 24455
Q ss_pred HHHHHHHHHHHc-CCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 274 AQKVMIYKCNIQ-GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 274 ~qk~Ii~~~~~~-gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
-.+..++..+++ ++|+.+-- ..-|++++ .... .|+||+...
T Consensus 185 ~l~~~i~~ik~~~~~Pv~vGF---------GI~~~e~~---~~~~-~~aDGvIVG 226 (259)
T PF00290_consen 185 ELKEFIKRIKKHTDLPVAVGF---------GISTPEQA---KKLA-AGADGVIVG 226 (259)
T ss_dssp HHHHHHHHHHHTTSS-EEEES---------SS-SHHHH---HHHH-TTSSEEEES
T ss_pred HHHHHHHHHHhhcCcceEEec---------CCCCHHHH---HHHH-ccCCEEEEC
Confidence 556677777765 58987642 23344433 3333 899999984
No 159
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=78.45 E-value=27 Score=34.41 Aligned_cols=130 Identities=10% Similarity=0.076 Sum_probs=76.5
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEE--ecCHHHHhcHHHHH-hcCCeeEEecCcccCcCCchhH
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSK--VENQEGVANFDDIL-ANSDAFMVARGDLGMEIPIEKI 271 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~Iiak--IEt~~av~nldeI~-~~sDgImIaRgDLg~e~~~~~v 271 (505)
+.|++.|+|+|-++ ++-.++.++|+.+. .+ .+|.- ..+.+.. .+-. .-+|.+.+|+- +. ......-
T Consensus 81 dlA~~~~adGVHLg--~~d~~~~~~r~~~~---~~-~iiG~s~~~s~~~a---~~A~~~gaDYv~~Gpv-~t-~tK~~~~ 149 (221)
T PRK06512 81 RIAGRVKADGLHIE--GNLAALAEAIEKHA---PK-MIVGFGNLRDRHGA---MEIGELRPDYLFFGKL-GA-DNKPEAH 149 (221)
T ss_pred HHHHHhCCCEEEEC--ccccCHHHHHHhcC---CC-CEEEecCCCCHHHH---HHhhhcCCCEEEECCC-CC-CCCCCCC
Confidence 45777899999998 33345777777663 22 34443 2233222 2211 23699999985 32 1111111
Q ss_pred HHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHH
Q 010627 272 FLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICV 348 (505)
Q Consensus 272 ~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~ 348 (505)
|.-...+-+.|+....||+.-..+ | ..++......|+|++.+.+.-..-..|.++++-+.+++.
T Consensus 150 p~gl~~l~~~~~~~~iPvvAIGGI----------~---~~n~~~~~~~GA~giAvisai~~~~dp~~a~~~~~~~~~ 213 (221)
T PRK06512 150 PRNLSLAEWWAEMIEIPCIVQAGS----------D---LASAVEVAETGAEFVALERAVFDAHDPPLAVAQANALLD 213 (221)
T ss_pred CCChHHHHHHHHhCCCCEEEEeCC----------C---HHHHHHHHHhCCCEEEEhHHhhCCCCHHHHHHHHHHHHh
Confidence 111111123466678998753322 2 234456667799999998888778889999998887764
No 160
>TIGR03586 PseI pseudaminic acid synthase.
Probab=78.43 E-value=29 Score=36.40 Aligned_cols=61 Identities=21% Similarity=0.284 Sum_probs=42.8
Q ss_pred HHHHhc-CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHH-cCCce
Q 010627 246 DDILAN-SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVL-DGTDC 323 (505)
Q Consensus 246 deI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~-~G~D~ 323 (505)
|.+.+. .|.+=||-+|+.. + .+++++.+.||||++.|.| .|-+|+......+. .|.+-
T Consensus 104 d~l~~~~v~~~KI~S~~~~n-~----------~LL~~va~~gkPvilstG~---------~t~~Ei~~Av~~i~~~g~~~ 163 (327)
T TIGR03586 104 DFLESLDVPAYKIASFEITD-L----------PLIRYVAKTGKPIIMSTGI---------ATLEEIQEAVEACREAGCKD 163 (327)
T ss_pred HHHHHcCCCEEEECCccccC-H----------HHHHHHHhcCCcEEEECCC---------CCHHHHHHHHHHHHHCCCCc
Confidence 444444 6889999888853 2 2455677789999998875 35689988888776 57743
Q ss_pred eee
Q 010627 324 VML 326 (505)
Q Consensus 324 imL 326 (505)
++|
T Consensus 164 i~L 166 (327)
T TIGR03586 164 LVL 166 (327)
T ss_pred EEE
Confidence 444
No 161
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=78.35 E-value=69 Score=32.25 Aligned_cols=67 Identities=12% Similarity=0.197 Sum_probs=42.8
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEec--C-HHHHhcHHHHHhc-CCeeEEecCcccC
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVE--N-QEGVANFDDILAN-SDAFMVARGDLGM 264 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIE--t-~~av~nldeI~~~-sDgImIaRgDLg~ 264 (505)
+.+.+.|+|||=.+|.. +++.++++.....-.+..+.=|= | .++++++.+.+++ ++|+.++|.=+..
T Consensus 167 ~~a~e~GAD~vKt~~~~---~~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~ 237 (267)
T PRK07226 167 RVAAELGADIVKTNYTG---DPESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQH 237 (267)
T ss_pred HHHHHHCCCEEeeCCCC---CHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcC
Confidence 56678899999999864 45555555542223344444444 4 3566677777765 6899998865543
No 162
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=78.26 E-value=82 Score=31.97 Aligned_cols=208 Identities=17% Similarity=0.123 Sum_probs=114.6
Q ss_pred CCCcccCCccccCCCCChhcHHHHHhcccccCCCEEEEc-CCCCh-----hHHHHHHHHHhccCCCceEEEEecCHHHHh
Q 010627 170 RKNVNLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIALS-FVRKG-----SDLVGVRKLLGGHAKNILLMSKVENQEGVA 243 (505)
Q Consensus 170 ~Kgvnlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~s-fV~sa-----~dv~~v~~~l~~~~~~~~IiakIEt~~av~ 243 (505)
|-|..-|+.. +|..++..|.+...+.|++.|=+. |+... .|-.++.+.+... .+.++.+..-+.++++
T Consensus 7 RDG~Q~~~~~-----~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~-~~~~~~~~~~~~~dv~ 80 (274)
T cd07938 7 RDGLQNEKTF-----IPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRR-PGVRYSALVPNLRGAE 80 (274)
T ss_pred CCCCcCCCCC-----cCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccC-CCCEEEEECCCHHHHH
Confidence 3355555553 466777777677788999998664 43222 3444555555432 2456666654555443
Q ss_pred cHHHHHhc-CCe--eEEecCccc----CcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHH-
Q 010627 244 NFDDILAN-SDA--FMVARGDLG----MEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVAN- 315 (505)
Q Consensus 244 nldeI~~~-sDg--ImIaRgDLg----~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~n- 315 (505)
+ .++. .|. +++.-.|+- .....++....-+..++.++++|+-+.+.-.+-=+.-...+-+...+.+++.
T Consensus 81 ~---A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~ 157 (274)
T cd07938 81 R---ALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAER 157 (274)
T ss_pred H---HHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHH
Confidence 3 3332 354 333434421 1122345566667889999999998753211110000111224455666655
Q ss_pred HHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCchhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcCCcEEEE
Q 010627 316 AVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDYGDVFKRVMQHSPVPMSPLESLASSAVRTANSARATLILV 395 (505)
Q Consensus 316 av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv 395 (505)
+...|+|.|-| .+|.=...|.++-+.+..+.++.= .....-|. ++ .--+|.+-...|.+.+++ +|=
T Consensus 158 ~~~~Ga~~i~l-~DT~G~~~P~~v~~lv~~l~~~~~-~~~i~~H~----------Hn-d~GlA~AN~laA~~aGa~-~id 223 (274)
T cd07938 158 LLDLGCDEISL-GDTIGVATPAQVRRLLEAVLERFP-DEKLALHF----------HD-TRGQALANILAALEAGVR-RFD 223 (274)
T ss_pred HHHcCCCEEEE-CCCCCccCHHHHHHHHHHHHHHCC-CCeEEEEE----------CC-CCChHHHHHHHHHHhCCC-EEE
Confidence 56779999999 588877889998888877764320 01000011 11 112455556667788888 344
Q ss_pred EcCCc
Q 010627 396 LTRGG 400 (505)
Q Consensus 396 ~T~sG 400 (505)
-|-.|
T Consensus 224 ~t~~G 228 (274)
T cd07938 224 SSVGG 228 (274)
T ss_pred Eeccc
Confidence 44443
No 163
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=78.05 E-value=79 Score=31.71 Aligned_cols=159 Identities=14% Similarity=0.137 Sum_probs=98.7
Q ss_pred CCChhcHHHHHhcccccCCCEEEEc-CCCChhHHHHHHHHHhccCCCceEEEEe-cCHHHHhcHHHHHhc--CCeeEE--
Q 010627 184 TLTEKDKEDILKWGIPNQIDMIALS-FVRKGSDLVGVRKLLGGHAKNILLMSKV-ENQEGVANFDDILAN--SDAFMV-- 257 (505)
Q Consensus 184 ~lte~D~~di~~~al~~g~d~V~~s-fV~sa~dv~~v~~~l~~~~~~~~IiakI-Et~~av~nldeI~~~--sDgImI-- 257 (505)
.++..++..+.+...+.|++.|=+- |+.++++.+.++.+. +...+..+.+.+ -+...++..-+=... .|.|-+
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~-~~~~~~~~~~l~r~~~~~v~~a~~~~~~~~~~~i~i~~ 94 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVDVIEAGFPAASPGDFEAVKRIA-REVLNAEICGLARAVKKDIDAAAEALKPAKVDRIHTFI 94 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHH-HhCCCCEEEEEccCCHhhHHHHHHhCCCCCCCEEEEEe
Confidence 3466777777677778999998764 445788876666544 333456666666 234444433221100 454444
Q ss_pred ecCccc----CcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHH-HHcCCceeeecccCCC
Q 010627 258 ARGDLG----MEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANA-VLDGTDCVMLSGETAA 332 (505)
Q Consensus 258 aRgDLg----~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~na-v~~G~D~imLs~Eta~ 332 (505)
+-.|.- .....++....-+..++.|+++|..+.+. ....+.-+.+.+.+++.. ...|+|.|.| .+|.=
T Consensus 95 ~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~------~~~~~~~~~~~~~~~~~~~~~~G~~~i~l-~DT~G 167 (268)
T cd07940 95 ATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFS------AEDATRTDLDFLIEVVEAAIEAGATTINI-PDTVG 167 (268)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEe------eecCCCCCHHHHHHHHHHHHHcCCCEEEE-CCCCC
Confidence 222221 11223344455678888999999877642 223445567777776664 5569999999 68888
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 010627 333 GAYPEVAVRTMAQICVEA 350 (505)
Q Consensus 333 G~yP~~~V~~m~~i~~~a 350 (505)
..+|.++-+.++.+-+..
T Consensus 168 ~~~P~~v~~lv~~l~~~~ 185 (268)
T cd07940 168 YLTPEEFGELIKKLKENV 185 (268)
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 889999988888876543
No 164
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=77.92 E-value=62 Score=31.20 Aligned_cols=113 Identities=18% Similarity=0.172 Sum_probs=74.2
Q ss_pred ChhcHHHHHhcccccCCCEEEEc-----CCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhc---HHHHHhc-CCeeE
Q 010627 186 TEKDKEDILKWGIPNQIDMIALS-----FVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVAN---FDDILAN-SDAFM 256 (505)
Q Consensus 186 te~D~~di~~~al~~g~d~V~~s-----fV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~n---ldeI~~~-sDgIm 256 (505)
+..|..++.+...+.|++++.+. |-.+.++++.+++.. +++|+.| ..+.+ +++..+. +|++.
T Consensus 29 ~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v-----~iPi~~~----~~i~~~~~v~~~~~~Gad~v~ 99 (217)
T cd00331 29 EDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAV-----SLPVLRK----DFIIDPYQIYEARAAGADAVL 99 (217)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhc-----CCCEEEC----CeecCHHHHHHHHHcCCCEEE
Confidence 44566666567778899999763 446788888888865 4566655 13332 3444443 69999
Q ss_pred EecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeeccc
Q 010627 257 VARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGE 329 (505)
Q Consensus 257 IaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~E 329 (505)
++--||. . ..-+.+++.+...|..+++.+. +-.| +..+...|+|.+..++.
T Consensus 100 l~~~~~~----~----~~~~~~~~~~~~~g~~~~v~v~-----------~~~e---~~~~~~~g~~~i~~t~~ 150 (217)
T cd00331 100 LIVAALD----D----EQLKELYELARELGMEVLVEVH-----------DEEE---LERALALGAKIIGINNR 150 (217)
T ss_pred EeeccCC----H----HHHHHHHHHHHHcCCeEEEEEC-----------CHHH---HHHHHHcCCCEEEEeCC
Confidence 8654543 1 3446777788888998865432 2333 56677789999998843
No 165
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=77.80 E-value=31 Score=34.36 Aligned_cols=141 Identities=8% Similarity=0.025 Sum_probs=83.1
Q ss_pred HHHhcccccCCCEEEEcCCC----------ChhHHHHHHHHHhccCCCceEEEE-------e---c---CHHHHhcHHHH
Q 010627 192 DILKWGIPNQIDMIALSFVR----------KGSDLVGVRKLLGGHAKNILLMSK-------V---E---NQEGVANFDDI 248 (505)
Q Consensus 192 di~~~al~~g~d~V~~sfV~----------sa~dv~~v~~~l~~~~~~~~Iiak-------I---E---t~~av~nldeI 248 (505)
.+ +++.++|+|+|=+++.. +.+++.++++.+.+.|-.+.-+.- + + ..++++.+...
T Consensus 21 ~~-~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~ 99 (284)
T PRK13210 21 RL-VFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKA 99 (284)
T ss_pred HH-HHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHH
Confidence 44 77889999999887543 467899999999888755443210 1 1 12466667776
Q ss_pred Hhc-----CCeeEEecCcccCcC----CchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHc
Q 010627 249 LAN-----SDAFMVARGDLGMEI----PIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLD 319 (505)
Q Consensus 249 ~~~-----sDgImIaRgDLg~e~----~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~ 319 (505)
++. ++.|.+..++...+- ..+.+...-+.+.+.+.++|..+. +|.|-.+-.++.++..++..++
T Consensus 100 i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~-----lE~~~~~~~~~~~~~~~l~~~v-- 172 (284)
T PRK13210 100 IRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLA-----VEIMDTPFMNSISKWKKWDKEI-- 172 (284)
T ss_pred HHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEE-----EEecCccccCCHHHHHHHHHHc--
Confidence 664 356666433321111 123444455677778888887655 3444334456777777777766
Q ss_pred CCceeeecccCC----CCCCHHHHH
Q 010627 320 GTDCVMLSGETA----AGAYPEVAV 340 (505)
Q Consensus 320 G~D~imLs~Eta----~G~yP~~~V 340 (505)
+.+.+-+.-++. .|..|.+.+
T Consensus 173 ~~~~~~~~~D~~h~~~~~~~~~~~l 197 (284)
T PRK13210 173 DSPWLTVYPDVGNLSAWGNDVWSEL 197 (284)
T ss_pred CCCceeEEecCChhhhcCCCHHHHH
Confidence 445555544542 245555443
No 166
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=77.70 E-value=25 Score=38.04 Aligned_cols=122 Identities=18% Similarity=0.152 Sum_probs=69.9
Q ss_pred HHHHhcccccCCCEEEEcC-CCChhHHHHHHHH-H--hccC---CCceEEEEecCHHHHhcH---------HHHHhc---
Q 010627 191 EDILKWGIPNQIDMIALSF-VRKGSDLVGVRKL-L--GGHA---KNILLMSKVENQEGVANF---------DDILAN--- 251 (505)
Q Consensus 191 ~di~~~al~~g~d~V~~sf-V~sa~dv~~v~~~-l--~~~~---~~~~IiakIEt~~av~nl---------deI~~~--- 251 (505)
+.+ +..++.|+..|..|. ......+...+.. + ...+ ..-.|++|+-+++-.... +.+.+.
T Consensus 86 ~~v-~l~le~gV~~ve~sa~~~~~p~~~~~r~~G~~~~~~g~~~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~~~G~i 164 (418)
T cd04742 86 GLV-DLFLRHGVRVVEASAFMQLTPALVRYRAKGLRRDADGRVQIANRIIAKVSRPEVAEAFMSPAPERILKKLLAEGKI 164 (418)
T ss_pred HHH-HHHHHcCCCEEEeccccCCCcchhhHHhcCCcccccccccccceEEEecCChhhhhhhcCCCCHHHHHHHHHcCCC
Confidence 345 778999999888874 3322233233321 0 0001 114699998775444211 222221
Q ss_pred -------------CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHc--------CCCeEEehhhhHhhhcCCCCChHHH
Q 010627 252 -------------SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQ--------GKPVVTATQMLESMIKSPRPTRAEA 310 (505)
Q Consensus 252 -------------sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~--------gkpvi~ATqmLeSM~~~~~ptraEv 310 (505)
+|.|.+. .|=|-+.+-.....+--.|.+.+.+. ..|||.|.-+- .-
T Consensus 165 t~~eA~~A~~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~------------tg 231 (418)
T cd04742 165 TEEQAELARRVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIG------------TP 231 (418)
T ss_pred CHHHHHHHHhCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCC------------CH
Confidence 5888887 67766655332223333333333222 58999887654 34
Q ss_pred HHHHHHHHcCCceeee
Q 010627 311 TDVANAVLDGTDCVML 326 (505)
Q Consensus 311 ~Dv~nav~~G~D~imL 326 (505)
.+++.|...|+|++++
T Consensus 232 ~~vaAA~alGAd~V~~ 247 (418)
T cd04742 232 EAAAAAFALGADFIVT 247 (418)
T ss_pred HHHHHHHHcCCcEEee
Confidence 5789999999999988
No 167
>PF01274 Malate_synthase: Malate synthase; InterPro: IPR001465 Malate synthase (2.3.3.9 from EC) catalyses the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. Malate synthase has a TIM beta/alpha-barrel fold [].; GO: 0004474 malate synthase activity, 0006097 glyoxylate cycle; PDB: 1Y8B_A 1P7T_A 2JQX_A 1D8C_A 3CUX_A 1N8W_A 2GQ3_A 1N8I_A 3CV2_A 3CUZ_A ....
Probab=77.47 E-value=10 Score=42.21 Aligned_cols=124 Identities=13% Similarity=0.114 Sum_probs=76.7
Q ss_pred CCCEEEEcCCCChhHHHHHHHHHh-------ccCCCceEEEEecCHHHHhcHHHHHhcC-C---e---------------
Q 010627 201 QIDMIALSFVRKGSDLVGVRKLLG-------GHAKNILLMSKVENQEGVANFDDILANS-D---A--------------- 254 (505)
Q Consensus 201 g~d~V~~sfV~sa~dv~~v~~~l~-------~~~~~~~IiakIEt~~av~nldeI~~~s-D---g--------------- 254 (505)
+--|+-+|+.+++++++--.+.+. -...-++.-..|||..|.-+++||+-.. | |
T Consensus 203 ~gpYfylPKme~~~EA~lwn~vF~~~E~~Lglp~gTIKatvLiEt~~Aafem~Eilyelr~h~~gLN~GrwDYifS~Ik~ 282 (526)
T PF01274_consen 203 SGPYFYLPKMESHEEARLWNDVFSFAEDLLGLPRGTIKATVLIETIPAAFEMEEILYELRDHSVGLNCGRWDYIFSEIKT 282 (526)
T ss_dssp SSEEEEE-S-SSHHHHHHHHHHHHHHHHHHTSSTTSEEEEEEE-SHHHHTTHHHHHHHTTTTEEEEEE-HHHHHHHHHHH
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEeeehhHHHhhHHHHHHHHHhheeeeecCchhhhHHHHHH
Confidence 344677999999999987665442 2223589999999999999999999753 3 2
Q ss_pred -------eEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCe--EEehhhhHh--hhcCCCCChHHHHHHHHHHHcCCce
Q 010627 255 -------FMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPV--VTATQMLES--MIKSPRPTRAEATDVANAVLDGTDC 323 (505)
Q Consensus 255 -------ImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpv--i~ATqmLeS--M~~~~~ptraEv~Dv~nav~~G~D~ 323 (505)
++=.|..++++-| -+....+..++.|++.|... ++|.++--. |..|+.--..=..|=..-+.+|+||
T Consensus 283 ~~~~~~~vlPdR~~v~m~~p--fm~aY~~llv~tch~Rga~a~gGmaa~ip~~~d~~~~~~a~~~v~~dK~rE~~~G~dg 360 (526)
T PF01274_consen 283 FRNRPDFVLPDRKQVTMTQP--FMRAYEDLLVRTCHRRGAHAMGGMAAFIPIGKDPWANPDAMAKVRADKEREAKAGFDG 360 (526)
T ss_dssp TCCGCCBB---GGGGGCGSH--HHHHHHHHHHHHHHHTT-HHHTTCTTTSEEEEEEHHBTTCHHHHHHHTHHHHHTT-SE
T ss_pred hhhCCCccccccccccccCH--HHHHHHHHHHHHHhhcCCccccCCccccCCCCChhhhHHHHHHHHHHHHHHHhcCCCc
Confidence 2223444444444 46678899999999999765 444443311 2223322222224445588999999
Q ss_pred eee
Q 010627 324 VML 326 (505)
Q Consensus 324 imL 326 (505)
-+.
T Consensus 361 ~WV 363 (526)
T PF01274_consen 361 AWV 363 (526)
T ss_dssp EEE
T ss_pred ccc
Confidence 888
No 168
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=76.95 E-value=55 Score=30.24 Aligned_cols=103 Identities=19% Similarity=0.159 Sum_probs=54.7
Q ss_pred ChHHHHHHHHHHHcCCceeeecccCCCCCC----HHHHHHHHHHHHHHHhcccC-chhhHHhhhhCCCCCCCchhhHHHH
Q 010627 306 TRAEATDVANAVLDGTDCVMLSGETAAGAY----PEVAVRTMAQICVEAESTLD-YGDVFKRVMQHSPVPMSPLESLASS 380 (505)
Q Consensus 306 traEv~Dv~nav~~G~D~imLs~Eta~G~y----P~~~V~~m~~i~~~aE~~~~-~~~~~~~~~~~~~~~~~~~~~ia~~ 380 (505)
|+.-+..+..+...|+|++++..- .+.. +.+.++..+.++.+++..+. +-+ ..|......+.+. .
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy-------~~p~~~~~~~~~~-~ 133 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVIN--IGSLKEGDWEEVLEEIAAVVEAADGGLPLKVI-------LETRGLKTADEIA-K 133 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecc--HHHHhCCCHHHHHHHHHHHHHHhcCCceEEEE-------EECCCCCCHHHHH-H
Confidence 455566777888999999999532 1111 46667888888877622111 000 0111110123233 3
Q ss_pred HHHHHHhcCCcEEEEEcC------CchHHHHHHhh-CCCCcEEEE
Q 010627 381 AVRTANSARATLILVLTR------GGSTAKLVAKY-RPGMPILSV 418 (505)
Q Consensus 381 av~~a~~~~a~~Ivv~T~------sG~ta~~ls~~-RP~~pIiav 418 (505)
.++++...+++.|=..+. +-...+.+.+. .+++||+++
T Consensus 134 ~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~ 178 (201)
T cd00945 134 AARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAA 178 (201)
T ss_pred HHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEE
Confidence 355566788886654443 11222333333 336788888
No 169
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=76.82 E-value=69 Score=30.37 Aligned_cols=107 Identities=22% Similarity=0.256 Sum_probs=68.0
Q ss_pred hcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEE-EecCHHHHhcHHHHHhc-CCeeEEecCcccCc
Q 010627 188 KDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMS-KVENQEGVANFDDILAN-SDAFMVARGDLGME 265 (505)
Q Consensus 188 ~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~-sDgImIaRgDLg~e 265 (505)
.+...+.+.+++.|++.|-+.. ++......++.+....+ +..|-+ -|=+.+ ++++.++. +|+++.+-.|
T Consensus 16 ~~~~~~~~~l~~~G~~~vev~~-~~~~~~~~i~~l~~~~~-~~~iGag~v~~~~---~~~~a~~~Ga~~i~~p~~~---- 86 (190)
T cd00452 16 EDALALAEALIEGGIRAIEITL-RTPGALEAIRALRKEFP-EALIGAGTVLTPE---QADAAIAAGAQFIVSPGLD---- 86 (190)
T ss_pred HHHHHHHHHHHHCCCCEEEEeC-CChhHHHHHHHHHHHCC-CCEEEEEeCCCHH---HHHHHHHcCCCEEEcCCCC----
Confidence 3343444778889999999986 67767776666554433 343332 233333 44555544 6888754222
Q ss_pred CCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 266 IPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 266 ~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
..++++|+..|.|++.- ..-.+++..|...|+|.+.+.
T Consensus 87 ----------~~~~~~~~~~~~~~i~g--------------v~t~~e~~~A~~~Gad~i~~~ 124 (190)
T cd00452 87 ----------PEVVKAANRAGIPLLPG--------------VATPTEIMQALELGADIVKLF 124 (190)
T ss_pred ----------HHHHHHHHHcCCcEECC--------------cCCHHHHHHHHHCCCCEEEEc
Confidence 35888999999997641 112345677788999999984
No 170
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=76.75 E-value=29 Score=37.84 Aligned_cols=122 Identities=18% Similarity=0.166 Sum_probs=68.9
Q ss_pred HHHHHhcccccCCCEEEEcCC-C-ChhHHHHHHHH-H--hccC---CCceEEEEecCHHHHhc---------HHHHHhc-
Q 010627 190 KEDILKWGIPNQIDMIALSFV-R-KGSDLVGVRKL-L--GGHA---KNILLMSKVENQEGVAN---------FDDILAN- 251 (505)
Q Consensus 190 ~~di~~~al~~g~d~V~~sfV-~-sa~dv~~v~~~-l--~~~~---~~~~IiakIEt~~av~n---------ldeI~~~- 251 (505)
.+.+ ++.++.|+..|..|.- . ++. +...+.. + ...+ ....|++|+-+++-... ++.+.+.
T Consensus 90 ~~~v-~l~l~~~V~~veasa~~~~~p~-~v~~r~~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p~p~~~v~~L~~~G 167 (444)
T TIGR02814 90 WGLV-DLLLRHGVRIVEASAFMQLTPA-LVRYRAKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPAPAHILQKLLAEG 167 (444)
T ss_pred HHHH-HHHHHcCCCEEEeccccCCCcc-hhhhhhccccccccccccccceEEEecCCHHHHHHhcCCCcHHHHHHHHHcC
Confidence 3445 6678899998877622 2 332 2222221 1 0001 12479999887765543 1222211
Q ss_pred ---------------CCeeEEecCcccCcCCchhHHHHHHHHHHHHHH------c--CCCeEEehhhhHhhhcCCCCChH
Q 010627 252 ---------------SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNI------Q--GKPVVTATQMLESMIKSPRPTRA 308 (505)
Q Consensus 252 ---------------sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~------~--gkpvi~ATqmLeSM~~~~~ptra 308 (505)
+|.|.+. .|=|-+.+-.....+...|.+...+ + ..|||.|.-+-+
T Consensus 168 ~it~eEA~~a~~~g~aD~Ivve-~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t----------- 235 (444)
T TIGR02814 168 RITREEAELARRVPVADDICVE-ADSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGT----------- 235 (444)
T ss_pred CCCHHHHHHHHhCCCCcEEEEe-ccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCC-----------
Confidence 5888886 7776666533233333344332222 2 356888877552
Q ss_pred HHHHHHHHHHcCCceeee
Q 010627 309 EATDVANAVLDGTDCVML 326 (505)
Q Consensus 309 Ev~Dv~nav~~G~D~imL 326 (505)
-.+++.+...|+|++.+
T Consensus 236 -~~~vaAAlaLGAdgV~~ 252 (444)
T TIGR02814 236 -PEAAAAAFMLGADFIVT 252 (444)
T ss_pred -HHHHHHHHHcCCcEEEe
Confidence 35678999999999988
No 171
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=76.56 E-value=23 Score=35.40 Aligned_cols=99 Identities=21% Similarity=0.292 Sum_probs=56.9
Q ss_pred hhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010627 213 GSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTA 292 (505)
Q Consensus 213 a~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~A 292 (505)
.++..++.+++++. .+..++-.=..++++-++++ -.+.+=|+-+||.. + .+++.+.+.|||+|++
T Consensus 55 ~e~~~~L~~~~~~~--gi~f~stpfd~~s~d~l~~~--~~~~~KIaS~dl~n------~-----~lL~~~A~tgkPvIlS 119 (241)
T PF03102_consen 55 EEQHKELFEYCKEL--GIDFFSTPFDEESVDFLEEL--GVPAYKIASGDLTN------L-----PLLEYIAKTGKPVILS 119 (241)
T ss_dssp HHHHHHHHHHHHHT--T-EEEEEE-SHHHHHHHHHH--T-SEEEE-GGGTT-------H-----HHHHHHHTT-S-EEEE
T ss_pred HHHHHHHHHHHHHc--CCEEEECCCCHHHHHHHHHc--CCCEEEeccccccC------H-----HHHHHHHHhCCcEEEE
Confidence 56666666666654 35556644455555444333 27888999999862 2 2567788899999999
Q ss_pred hhhhHhhhcCCCCChHHHHHHHHHH-HcCCceeeecccCCCCCCHH
Q 010627 293 TQMLESMIKSPRPTRAEATDVANAV-LDGTDCVMLSGETAAGAYPE 337 (505)
Q Consensus 293 TqmLeSM~~~~~ptraEv~Dv~nav-~~G~D~imLs~Eta~G~yP~ 337 (505)
|-| -|-+|+.+..+.+ ..|.+-+.|-.= +..||.
T Consensus 120 TG~---------stl~EI~~Av~~~~~~~~~~l~llHC--~s~YP~ 154 (241)
T PF03102_consen 120 TGM---------STLEEIERAVEVLREAGNEDLVLLHC--VSSYPT 154 (241)
T ss_dssp -TT-----------HHHHHHHHHHHHHHCT--EEEEEE---SSSS-
T ss_pred CCC---------CCHHHHHHHHHHHHhcCCCCEEEEec--CCCCCC
Confidence 985 4668998888888 666665555333 336774
No 172
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=76.29 E-value=23 Score=33.96 Aligned_cols=117 Identities=15% Similarity=0.140 Sum_probs=63.5
Q ss_pred hcHHHHHhcccccCCCEEEEcCCC-ChhHH-----HHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc--CCeeEEec
Q 010627 188 KDKEDILKWGIPNQIDMIALSFVR-KGSDL-----VGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN--SDAFMVAR 259 (505)
Q Consensus 188 ~D~~di~~~al~~g~d~V~~sfV~-sa~dv-----~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~--sDgImIaR 259 (505)
++.+|+ +.+.+.|+|+|.+=|.. |+..+ +++++.+. ..+.-++-+-+. -++.+.+++.. .|+|-++-
T Consensus 7 ~~~ed~-~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~---~~~~~V~v~vn~-~~~~i~~ia~~~~~d~Vqlhg 81 (203)
T cd00405 7 TTLEDA-LAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALP---PFVKRVGVFVNE-DLEEILEIAEELGLDVVQLHG 81 (203)
T ss_pred CCHHHH-HHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCC---CCCcEEEEEeCC-CHHHHHHHHHhcCCCEEEECC
Confidence 356688 88899999999998854 55555 34444432 223333434343 25555666654 48998874
Q ss_pred CcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCC
Q 010627 260 GDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETA 331 (505)
Q Consensus 260 gDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta 331 (505)
.| +.+.+..++ +..|++++-+-. ..+.. -.+...+...|+|.+++...|.
T Consensus 82 ~e-----~~~~~~~l~-------~~~~~~~i~~i~---------~~~~~-~~~~~~~~~~~aD~il~dt~~~ 131 (203)
T cd00405 82 DE-----SPEYCAQLR-------ARLGLPVIKAIR---------VKDEE-DLEKAAAYAGEVDAILLDSKSG 131 (203)
T ss_pred CC-----CHHHHHHHH-------hhcCCcEEEEEe---------cCChh-hHHHhhhccccCCEEEEcCCCC
Confidence 33 222222222 123777763211 11111 1222456668999999854443
No 173
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=76.23 E-value=32 Score=36.28 Aligned_cols=172 Identities=15% Similarity=0.070 Sum_probs=92.1
Q ss_pred EEEcCCCChhHHHHHHHHHhc----cCCCceEEEE---ecC--HH------HHhcHHHHHhc-----CCeeEEecCcccC
Q 010627 205 IALSFVRKGSDLVGVRKLLGG----HAKNILLMSK---VEN--QE------GVANFDDILAN-----SDAFMVARGDLGM 264 (505)
Q Consensus 205 V~~sfV~sa~dv~~v~~~l~~----~~~~~~Iiak---IEt--~~------av~nldeI~~~-----sDgImIaRgDLg~ 264 (505)
++.+--+++.-...+.+++.. ...+..|++. +|. .. ++.+.+.+++. +|+++.-+|=|..
T Consensus 38 ~~~~~~~~~~~~~rL~Rl~~~g~l~~tGr~vilpvDHG~ehGp~~~f~~n~gl~dp~~~i~~a~~~g~dAv~~~~G~l~~ 117 (348)
T PRK09250 38 VMIYSDRNPGVLRNLQRLLNHGRLAGTGYLSILPVDQGFEHSAGASFAPNPLYFDPENIVKLAIEAGCNAVASTLGVLEA 117 (348)
T ss_pred ccCcccCCHhHHHHHHHHhcccccCCCCCEEEEEcccccccCCccccccCCcccCHHHHHHHHHhcCCCEEEeCHHHHHh
Confidence 455556667777777777753 2223444442 111 11 56666555542 5888876554322
Q ss_pred -cCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHH
Q 010627 265 -EIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTM 343 (505)
Q Consensus 265 -e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m 343 (505)
..+ ....+|.|+--.-=.|+...+.+...-+++|-.|+..|+|||..+-=-- +.+=-+.++.+
T Consensus 118 ~~~~---------------~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~G-s~~E~~ml~~l 181 (348)
T PRK09250 118 VARK---------------YAHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATIYFG-SEESRRQIEEI 181 (348)
T ss_pred cccc---------------ccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecC-CHHHHHHHHHH
Confidence 111 1234777764221112211122455556889999999999998853221 23346788888
Q ss_pred HHHHHHHhcc-cCc-hhhHHhhhhCCCC--CCCchhhHHHHHHHHHHhcCCcEE
Q 010627 344 AQICVEAEST-LDY-GDVFKRVMQHSPV--PMSPLESLASSAVRTANSARATLI 393 (505)
Q Consensus 344 ~~i~~~aE~~-~~~-~~~~~~~~~~~~~--~~~~~~~ia~~av~~a~~~~a~~I 393 (505)
.+++++++++ +.- -..|.+-...... +.+..+ +...|+++|.+++|+.|
T Consensus 182 ~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d-~Ia~AaRiaaELGADIV 234 (348)
T PRK09250 182 SEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAAD-LTGQANHLAATIGADII 234 (348)
T ss_pred HHHHHHHHHhCCCEEEEecccCcccCCcccccccHH-HHHHHHHHHHHHcCCEE
Confidence 8999999875 100 0112221111110 011234 55566888999999955
No 174
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=76.18 E-value=35 Score=32.67 Aligned_cols=121 Identities=21% Similarity=0.216 Sum_probs=69.2
Q ss_pred hcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecC---c---
Q 010627 188 KDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARG---D--- 261 (505)
Q Consensus 188 ~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRg---D--- 261 (505)
.+.+.+.+.+.+.++|+|-+..-++.+.++++++.+ +.++.....+-+....+...+.-..+|++++.-. +
T Consensus 60 ~~~~~i~~ia~~~~~d~Vqlhg~e~~~~~~~l~~~~---~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg 136 (203)
T cd00405 60 EDLEEILEIAEELGLDVVQLHGDESPEYCAQLRARL---GLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGG 136 (203)
T ss_pred CCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhc---CCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCC
Confidence 344444466788899999999888888888888765 2222111444443333222222234699988431 2
Q ss_pred ccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcC-Cceeeecc--cCCCC
Q 010627 262 LGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDG-TDCVMLSG--ETAAG 333 (505)
Q Consensus 262 Lg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G-~D~imLs~--Eta~G 333 (505)
-|...+++.+..+. ..+|++.|.-+ | ...+..++..| +|++-+++ |++-|
T Consensus 137 ~g~~~~~~~l~~~~---------~~~PvilaGGI----------~---~~Nv~~~i~~~~~~gvdv~S~ie~~pg 189 (203)
T cd00405 137 TGKTFDWSLLRGLA---------SRKPVILAGGL----------T---PDNVAEAIRLVRPYGVDVSSGVETSPG 189 (203)
T ss_pred CcceEChHHhhccc---------cCCCEEEECCC----------C---hHHHHHHHHhcCCCEEEcCCcccCCCC
Confidence 13344444333221 56899988753 1 23345566667 78877754 55546
No 175
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=76.17 E-value=78 Score=30.93 Aligned_cols=117 Identities=15% Similarity=0.238 Sum_probs=70.5
Q ss_pred HHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccC
Q 010627 276 KVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLD 355 (505)
Q Consensus 276 k~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~ 355 (505)
.-+...|+..|.|+++- .|....-..+...-..|++.+...+. | -++.+...+++++-...++
T Consensus 63 ~alA~~a~~~g~~~~v~-----------~p~~~~~~~~~~~~~~Ga~v~~~~~~-----~-~~~~~~a~~~~~~~~~~~~ 125 (244)
T cd00640 63 IALAAAAARLGLKCTIV-----------MPEGASPEKVAQMRALGAEVVLVPGD-----F-DDAIALAKELAEEDPGAYY 125 (244)
T ss_pred HHHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHCCCEEEEECCC-----H-HHHHHHHHHHHHhCCCCEe
Confidence 35567899999998763 24444455566677789987776533 3 4566666665544211111
Q ss_pred chhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcC---CcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 010627 356 YGDVFKRVMQHSPVPMSPLESLASSAVRTANSAR---ATLILVLTRGGSTAKLVAK----YRPGMPILSV 418 (505)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~---a~~Ivv~T~sG~ta~~ls~----~RP~~pIiav 418 (505)
-.+ | ......+.....+.++..+++ .+.|++.+-+|.|+--+++ .+|...|+++
T Consensus 126 ~~~-~--------~n~~~~~g~~~~~~Ei~~q~~~~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v 186 (244)
T cd00640 126 VNQ-F--------DNPANIAGQGTIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGV 186 (244)
T ss_pred cCC-C--------CCHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEE
Confidence 000 0 001112333344556666665 5899999999998775444 4688999998
No 176
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=76.04 E-value=6 Score=41.22 Aligned_cols=48 Identities=21% Similarity=0.366 Sum_probs=40.0
Q ss_pred EEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHH
Q 010627 19 IVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTA 66 (505)
Q Consensus 19 Ii~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~ 66 (505)
+-+.+|+.....+.++.++++|++++=+|++||..+...++++.+|+.
T Consensus 85 v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~ 132 (325)
T cd00381 85 VGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKK 132 (325)
T ss_pred EEEecCCChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 445567655667889999999999999999999998888888888874
No 177
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=75.77 E-value=1.4e+02 Score=33.36 Aligned_cols=162 Identities=17% Similarity=0.184 Sum_probs=99.0
Q ss_pred CCChhcHHHHHhcccccCCCEEEEcC-CCChhHHHHHHHHHhccCCCceEEEEecC-HHHHh-----cHHHHHhc-CCee
Q 010627 184 TLTEKDKEDILKWGIPNQIDMIALSF-VRKGSDLVGVRKLLGGHAKNILLMSKVEN-QEGVA-----NFDDILAN-SDAF 255 (505)
Q Consensus 184 ~lte~D~~di~~~al~~g~d~V~~sf-V~sa~dv~~v~~~l~~~~~~~~IiakIEt-~~av~-----nldeI~~~-sDgI 255 (505)
.++..++..|.+...+.|+|.|=+.| .-++.|.+.++.+....-.+..+.+..-. ...+. .++..+.. .|.|
T Consensus 23 ~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~d~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~~~~g~~~i 102 (524)
T PRK12344 23 SFSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQALLDAGTPVV 102 (524)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCcCChhHHHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHHHHhCCCCEE
Confidence 44777777776777779999998866 55777777776654321123444443211 11221 12333333 3544
Q ss_pred --EEecCcccC----cCCchhHHHHHHHHHHHHHHcCCCeEEehh-hhHhhhcCCCCChHHHHHHHH-HHHcCCceeeec
Q 010627 256 --MVARGDLGM----EIPIEKIFLAQKVMIYKCNIQGKPVVTATQ-MLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLS 327 (505)
Q Consensus 256 --mIaRgDLg~----e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATq-mLeSM~~~~~ptraEv~Dv~n-av~~G~D~imLs 327 (505)
++.-.|+-. ....++....-+..++.++++|..|-+.+. +.+ .++-+..-+.+++. +...|+|.+.|
T Consensus 103 ~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~D----a~r~d~~~l~~~~~~~~~~Gad~i~l- 177 (524)
T PRK12344 103 TIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFD----GYKANPEYALATLKAAAEAGADWVVL- 177 (524)
T ss_pred EEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccc----cccCCHHHHHHHHHHHHhCCCCeEEE-
Confidence 334344322 223456777778999999999998765321 112 22333444556555 44679999998
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHH
Q 010627 328 GETAAGAYPEVAVRTMAQICVEA 350 (505)
Q Consensus 328 ~Eta~G~yP~~~V~~m~~i~~~a 350 (505)
.+|.=..+|.++-+.+..+.+..
T Consensus 178 ~DTvG~~~P~~v~~li~~l~~~~ 200 (524)
T PRK12344 178 CDTNGGTLPHEVAEIVAEVRAAP 200 (524)
T ss_pred ccCCCCcCHHHHHHHHHHHHHhc
Confidence 68888889999999988887765
No 178
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=75.46 E-value=21 Score=34.77 Aligned_cols=120 Identities=11% Similarity=0.042 Sum_probs=60.2
Q ss_pred hcHHHHHhcccccCCCEEEEcC--CCChhHHHHHHHHHhccCC-CceEEE--E---ecC--------HHHHhcHHHHHhc
Q 010627 188 KDKEDILKWGIPNQIDMIALSF--VRKGSDLVGVRKLLGGHAK-NILLMS--K---VEN--------QEGVANFDDILAN 251 (505)
Q Consensus 188 ~D~~di~~~al~~g~d~V~~sf--V~sa~dv~~v~~~l~~~~~-~~~Iia--k---IEt--------~~av~nldeI~~~ 251 (505)
++.+++ +.+++.|+|.|.++- .++++.+.++.+.+ +. .+.+-. + ++. ...++-++...+.
T Consensus 82 ~~~ed~-~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~---g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~ 157 (230)
T TIGR00007 82 RSLEDV-EKLLDLGVDRVIIGTAAVENPDLVKELLKEY---GPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEEL 157 (230)
T ss_pred CCHHHH-HHHHHcCCCEEEEChHHhhCHHHHHHHHHHh---CCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhC
Confidence 466777 778889999888762 34555555544443 32 222111 1 111 1112222233333
Q ss_pred -CCeeEEe-cCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecc
Q 010627 252 -SDAFMVA-RGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG 328 (505)
Q Consensus 252 -sDgImIa-RgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~ 328 (505)
+|++++. +.-=+..-+. ++ ..+-+.++....|++.+.-+ -+. .|+..+...|+|++|+..
T Consensus 158 g~~~ii~~~~~~~g~~~g~-~~----~~i~~i~~~~~ipvia~GGi---------~~~---~di~~~~~~Gadgv~ig~ 219 (230)
T TIGR00007 158 GLEGIIYTDISRDGTLSGP-NF----ELTKELVKAVNVPVIASGGV---------SSI---DDLIALKKLGVYGVIVGK 219 (230)
T ss_pred CCCEEEEEeecCCCCcCCC-CH----HHHHHHHHhCCCCEEEeCCC---------CCH---HHHHHHHHCCCCEEEEeH
Confidence 5878763 2111112221 11 11222233467999986553 333 455555668999999953
No 179
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=75.45 E-value=96 Score=31.54 Aligned_cols=104 Identities=13% Similarity=0.207 Sum_probs=58.1
Q ss_pred CChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc-----CCeeEEec---C---cccC-------c----CCc
Q 010627 211 RKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN-----SDAFMVAR---G---DLGM-------E----IPI 268 (505)
Q Consensus 211 ~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-----sDgImIaR---g---DLg~-------e----~~~ 268 (505)
.+++.+.++-+.+++. .+..|++||-. .+++..++++. +|+|.+.- | |+.. . -|.
T Consensus 140 ~~~~~~~eiv~~vr~~-~~~pv~vKi~~--~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~ 216 (300)
T TIGR01037 140 QDPELSADVVKAVKDK-TDVPVFAKLSP--NVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGP 216 (300)
T ss_pred cCHHHHHHHHHHHHHh-cCCCEEEECCC--ChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccch
Confidence 4556666665555543 25789999951 23334444432 58998731 1 2110 0 011
Q ss_pred hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeeccc
Q 010627 269 EKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGE 329 (505)
Q Consensus 269 ~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~E 329 (505)
...+...+.+-+.....+.|+|....+. ...|+..++..|+|++|+..-
T Consensus 217 ~~~~~~l~~v~~i~~~~~ipvi~~GGI~------------s~~da~~~l~~GAd~V~igr~ 265 (300)
T TIGR01037 217 AIKPIALRMVYDVYKMVDIPIIGVGGIT------------SFEDALEFLMAGASAVQVGTA 265 (300)
T ss_pred hhhHHHHHHHHHHHhcCCCCEEEECCCC------------CHHHHHHHHHcCCCceeecHH
Confidence 1223334444444555689998755443 235667788899999999643
No 180
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=75.25 E-value=7.3 Score=36.33 Aligned_cols=46 Identities=22% Similarity=0.207 Sum_probs=40.9
Q ss_pred chhhHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCCC-CcEEEE
Q 010627 373 PLESLASSAVRTANSARATLILVLTRGGSTAKLVAKYRPG-MPILSV 418 (505)
Q Consensus 373 ~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~ls~~RP~-~pIiav 418 (505)
-++..-..|++-|.+++.+-|++.|.||.||++++-+-|. ..++.+
T Consensus 11 NT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvV 57 (186)
T COG1751 11 NTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVV 57 (186)
T ss_pred chHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEE
Confidence 3577778889999999999999999999999999999888 777777
No 181
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=75.14 E-value=35 Score=35.76 Aligned_cols=57 Identities=25% Similarity=0.299 Sum_probs=41.1
Q ss_pred HHHHhc-CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHH-cCCc
Q 010627 246 DDILAN-SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVL-DGTD 322 (505)
Q Consensus 246 deI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~-~G~D 322 (505)
|.+.+. .|.+=||-+|+.. + .+++.+.+.|||+|+.|.| .|-+|+.....++. .|.+
T Consensus 103 d~l~~~~v~~~KIaS~~~~n------~-----pLL~~~A~~gkPvilStGm---------atl~Ei~~Av~~i~~~G~~ 161 (329)
T TIGR03569 103 DFLEDLGVPRFKIPSGEITN------A-----PLLKKIARFGKPVILSTGM---------ATLEEIEAAVGVLRDAGTP 161 (329)
T ss_pred HHHHhcCCCEEEECcccccC------H-----HHHHHHHhcCCcEEEECCC---------CCHHHHHHHHHHHHHcCCC
Confidence 444444 7888899888863 2 3456677889999999886 35688988888776 4654
No 182
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=74.56 E-value=53 Score=32.61 Aligned_cols=91 Identities=22% Similarity=0.272 Sum_probs=53.2
Q ss_pred HHHHHhcccccCCCEEEE--cC---CCChhHHHHHH--------------HHHhccC--CCceEEEEec-CH---HHHhc
Q 010627 190 KEDILKWGIPNQIDMIAL--SF---VRKGSDLVGVR--------------KLLGGHA--KNILLMSKVE-NQ---EGVAN 244 (505)
Q Consensus 190 ~~di~~~al~~g~d~V~~--sf---V~sa~dv~~v~--------------~~l~~~~--~~~~IiakIE-t~---~av~n 244 (505)
.+.+ +...+.|+|++-+ || +-+...|+.+- +.+++.. .+++++.+.. ++ .|+++
T Consensus 17 ~~~~-~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~ 95 (242)
T cd04724 17 LEIL-KALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQYGLER 95 (242)
T ss_pred HHHH-HHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHhCHHH
Confidence 3445 6667779998654 55 55655666432 1221111 1455666665 53 23444
Q ss_pred H-HHHHhc-CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEE
Q 010627 245 F-DDILAN-SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVT 291 (505)
Q Consensus 245 l-deI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ 291 (505)
+ ++..++ +||+++. || |.| -.+++++.|+++|...+.
T Consensus 96 fi~~~~~aG~~giiip--Dl----~~e----e~~~~~~~~~~~g~~~i~ 134 (242)
T cd04724 96 FLRDAKEAGVDGLIIP--DL----PPE----EAEEFREAAKEYGLDLIF 134 (242)
T ss_pred HHHHHHHCCCcEEEEC--CC----CHH----HHHHHHHHHHHcCCcEEE
Confidence 4 333333 5999995 55 443 457899999999987665
No 183
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=74.17 E-value=99 Score=30.91 Aligned_cols=186 Identities=17% Similarity=0.087 Sum_probs=102.9
Q ss_pred CChhcHHHHHhcccccCCCEEEEcCC------------CChhHHHHHHHHHhccCCCceEEEEecCHHH-HhcHHHHHhc
Q 010627 185 LTEKDKEDILKWGIPNQIDMIALSFV------------RKGSDLVGVRKLLGGHAKNILLMSKVENQEG-VANFDDILAN 251 (505)
Q Consensus 185 lte~D~~di~~~al~~g~d~V~~sfV------------~sa~dv~~v~~~l~~~~~~~~IiakIEt~~a-v~nldeI~~~ 251 (505)
++..++..+.+...+.|+|.|=+.|. ....+.+.++.+... ..+.++.+......+ .+.++...+.
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~-~~~~~~~~~~~~~~~~~~~i~~a~~~ 97 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEA-LKQAKLGVLLLPGIGTVDDLKMAADL 97 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHh-ccCCEEEEEecCCccCHHHHHHHHHc
Confidence 36677777767777889999866421 111223333333222 234566555321001 1223333332
Q ss_pred -CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHH-HHcCCceeeeccc
Q 010627 252 -SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANA-VLDGTDCVMLSGE 329 (505)
Q Consensus 252 -sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~na-v~~G~D~imLs~E 329 (505)
.|.+-+. .+..++. ..+..++.+++.|..+.+.-. +. ..-+..++.+++.. ...|+|.+.| .+
T Consensus 98 g~~~iri~-------~~~s~~~-~~~~~i~~ak~~G~~v~~~~~----~~--~~~~~~~~~~~~~~~~~~G~d~i~l-~D 162 (263)
T cd07943 98 GVDVVRVA-------THCTEAD-VSEQHIGAARKLGMDVVGFLM----MS--HMASPEELAEQAKLMESYGADCVYV-TD 162 (263)
T ss_pred CCCEEEEE-------echhhHH-HHHHHHHHHHHCCCeEEEEEE----ec--cCCCHHHHHHHHHHHHHcCCCEEEE-cC
Confidence 4665542 2333443 346689999999998765421 11 23456778777775 4459999999 79
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhc-ccCchhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcCCcEEEEEcCCc
Q 010627 330 TAAGAYPEVAVRTMAQICVEAES-TLDYGDVFKRVMQHSPVPMSPLESLASSAVRTANSARATLILVLTRGG 400 (505)
Q Consensus 330 ta~G~yP~~~V~~m~~i~~~aE~-~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG 400 (505)
|.=.-+|.+.-+.++.+-++... .+.+ |++. + --+|.+-...|.+.+++ +|=-|-.|
T Consensus 163 T~G~~~P~~v~~lv~~l~~~~~~~~l~~--H~Hn---------~--~GlA~AN~laAi~aGa~-~vd~s~~G 220 (263)
T cd07943 163 SAGAMLPDDVRERVRALREALDPTPVGF--HGHN---------N--LGLAVANSLAAVEAGAT-RIDGSLAG 220 (263)
T ss_pred CCCCcCHHHHHHHHHHHHHhCCCceEEE--EecC---------C--cchHHHHHHHHHHhCCC-EEEeeccc
Confidence 98889999888887777654332 1211 1110 1 12344445556677888 34444444
No 184
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=73.87 E-value=1.2e+02 Score=31.75 Aligned_cols=145 Identities=14% Similarity=0.093 Sum_probs=88.1
Q ss_pred CCChhcHHHHHhcccccCCCEEEE---------cCC------CChhHHHHHHHHHhccCCCceEEEEec----CHHHHhc
Q 010627 184 TLTEKDKEDILKWGIPNQIDMIAL---------SFV------RKGSDLVGVRKLLGGHAKNILLMSKVE----NQEGVAN 244 (505)
Q Consensus 184 ~lte~D~~di~~~al~~g~d~V~~---------sfV------~sa~dv~~v~~~l~~~~~~~~IiakIE----t~~av~n 244 (505)
.++..++..|.+...+.|+|.|=+ ||. .+.++++++++.+ ++.++.+.+- +.+.
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~----~~~~~~~ll~pg~~~~~d--- 92 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVV----KRAKVAVLLLPGIGTVHD--- 92 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhC----CCCEEEEEeccCccCHHH---
Confidence 347778888856666789999866 332 3334444444433 3345444442 3322
Q ss_pred HHHHHhc-CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHH-HHcCCc
Q 010627 245 FDDILAN-SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANA-VLDGTD 322 (505)
Q Consensus 245 ldeI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~na-v~~G~D 322 (505)
++.-.+. .|.|-|+= ...+.. .-++.++.+++.|..+.+. ++.+ ..-+..++.+.+.. ...|+|
T Consensus 93 l~~a~~~gvd~iri~~-------~~~e~d-~~~~~i~~ak~~G~~v~~~--l~~s----~~~~~e~l~~~a~~~~~~Ga~ 158 (333)
T TIGR03217 93 LKAAYDAGARTVRVAT-------HCTEAD-VSEQHIGMARELGMDTVGF--LMMS----HMTPPEKLAEQAKLMESYGAD 158 (333)
T ss_pred HHHHHHCCCCEEEEEe-------ccchHH-HHHHHHHHHHHcCCeEEEE--EEcc----cCCCHHHHHHHHHHHHhcCCC
Confidence 2222222 47766641 222332 3578899999999887642 2222 23456777777765 446999
Q ss_pred eeeecccCCCCCCHHHHHHHHHHHHHHH
Q 010627 323 CVMLSGETAAGAYPEVAVRTMAQICVEA 350 (505)
Q Consensus 323 ~imLs~Eta~G~yP~~~V~~m~~i~~~a 350 (505)
+|.+ .+|+=..+|.++-+....+.++.
T Consensus 159 ~i~i-~DT~G~~~P~~v~~~v~~l~~~l 185 (333)
T TIGR03217 159 CVYI-VDSAGAMLPDDVRDRVRALKAVL 185 (333)
T ss_pred EEEE-ccCCCCCCHHHHHHHHHHHHHhC
Confidence 9999 68888899998888877766544
No 185
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=73.57 E-value=76 Score=32.98 Aligned_cols=144 Identities=15% Similarity=0.154 Sum_probs=78.9
Q ss_pred cHHHHHhcccccCCCEEEEcCC--C-Ch--------hHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc-----C
Q 010627 189 DKEDILKWGIPNQIDMIALSFV--R-KG--------SDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN-----S 252 (505)
Q Consensus 189 D~~di~~~al~~g~d~V~~sfV--~-sa--------~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-----s 252 (505)
+..++.+.+.+.|+|+|-+.+- . ++ +.+.++-+.+.+. .+++|++|+- + .+.++.++++. +
T Consensus 113 ~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~-~~iPv~vKl~-p-~~~~~~~~a~~l~~~Ga 189 (325)
T cd04739 113 GWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSA-VTIPVAVKLS-P-FFSALAHMAKQLDAAGA 189 (325)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhc-cCCCEEEEcC-C-CccCHHHHHHHHHHcCC
Confidence 3344436666778999876542 1 11 1122232333222 3579999984 3 24456666653 4
Q ss_pred CeeEE-ecCcccCcCC--------------chhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHH
Q 010627 253 DAFMV-ARGDLGMEIP--------------IEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAV 317 (505)
Q Consensus 253 DgImI-aRgDLg~e~~--------------~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav 317 (505)
|||.+ .|. .+..+. ....+...+.+-+.+.....|+|-..-+. ...|+..++
T Consensus 190 dgi~~~nt~-~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~------------s~~Da~e~l 256 (325)
T cd04739 190 DGLVLFNRF-YQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVH------------DAEDVVKYL 256 (325)
T ss_pred CeEEEEcCc-CCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCC------------CHHHHHHHH
Confidence 88776 332 111111 11233444555555555678988655544 346788999
Q ss_pred HcCCceeeecccCCCCCC-HHHHHHHHHHHHHHHhccc
Q 010627 318 LDGTDCVMLSGETAAGAY-PEVAVRTMAQICVEAESTL 354 (505)
Q Consensus 318 ~~G~D~imLs~Eta~G~y-P~~~V~~m~~i~~~aE~~~ 354 (505)
..|||++++. |+.=.+ |- .+.+|+++-+.++
T Consensus 257 ~aGA~~Vqv~--ta~~~~gp~----~~~~i~~~L~~~l 288 (325)
T cd04739 257 LAGADVVMTT--SALLRHGPD----YIGTLLAGLEAWM 288 (325)
T ss_pred HcCCCeeEEe--hhhhhcCch----HHHHHHHHHHHHH
Confidence 9999999997 332222 42 4555566555543
No 186
>PRK15452 putative protease; Provisional
Probab=73.45 E-value=22 Score=38.83 Aligned_cols=84 Identities=14% Similarity=0.188 Sum_probs=58.8
Q ss_pred ceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcC-----CchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCC
Q 010627 230 ILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEI-----PIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPR 304 (505)
Q Consensus 230 ~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~-----~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ 304 (505)
+.+.|...+.++++ ..|..-+|+|.+|-..++..- ..++ .++.++.|+++|+.+.++++.+
T Consensus 4 peLlapag~~e~l~--aAi~~GADaVY~G~~~~~~R~~~~~f~~ed----l~eav~~ah~~g~kvyvt~n~i-------- 69 (443)
T PRK15452 4 PELLSPAGTLKNMR--YAFAYGADAVYAGQPRYSLRVRNNEFNHEN----LALGINEAHALGKKFYVVVNIA-------- 69 (443)
T ss_pred cEEEEECCCHHHHH--HHHHCCCCEEEECCCccchhhhccCCCHHH----HHHHHHHHHHcCCEEEEEecCc--------
Confidence 46778777777764 334445899999877777633 3232 5667889999999999987644
Q ss_pred CChHHHHHHHH----HHHcCCceeeec
Q 010627 305 PTRAEATDVAN----AVLDGTDCVMLS 327 (505)
Q Consensus 305 ptraEv~Dv~n----av~~G~D~imLs 327 (505)
|...|..++.. ....|+|+++.+
T Consensus 70 ~~e~el~~~~~~l~~l~~~gvDgvIV~ 96 (443)
T PRK15452 70 PHNAKLKTFIRDLEPVIAMKPDALIMS 96 (443)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 55566655444 345699999996
No 187
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=73.42 E-value=68 Score=32.91 Aligned_cols=129 Identities=16% Similarity=0.141 Sum_probs=70.7
Q ss_pred CCChhcHHHHH-------hcccccCCCEEEEcCC-------------CCh----------------hHHHHHHHHHhccC
Q 010627 184 TLTEKDKEDIL-------KWGIPNQIDMIALSFV-------------RKG----------------SDLVGVRKLLGGHA 227 (505)
Q Consensus 184 ~lte~D~~di~-------~~al~~g~d~V~~sfV-------------~sa----------------~dv~~v~~~l~~~~ 227 (505)
.+|..|.+.+. +.+.++|+|+|=+..- +.. +-++++|+.+ +
T Consensus 130 ~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~---g 206 (327)
T cd02803 130 EMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAV---G 206 (327)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHc---C
Confidence 57777776663 4777899999876543 222 3344444433 5
Q ss_pred CCceEEEEecCH----------HHHhcHHHHHhc-CCeeEEecCcccCcCCc----hhHHHHHHHHHHH-HHHcCCCeEE
Q 010627 228 KNILLMSKVENQ----------EGVANFDDILAN-SDAFMVARGDLGMEIPI----EKIFLAQKVMIYK-CNIQGKPVVT 291 (505)
Q Consensus 228 ~~~~IiakIEt~----------~av~nldeI~~~-sDgImIaRgDLg~e~~~----~~v~~~qk~Ii~~-~~~~gkpvi~ 291 (505)
.+..|..||--. ++++-+..+.+. .|.|-+..|+..-.... ..-.......++. ....+.|++.
T Consensus 207 ~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~ 286 (327)
T cd02803 207 PDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIA 286 (327)
T ss_pred CCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEE
Confidence 677888888632 223333333333 58888877664321110 0001111222222 2334789887
Q ss_pred ehhhhHhhhcCCCCChHHHHHHHHHHHc-CCceeeec
Q 010627 292 ATQMLESMIKSPRPTRAEATDVANAVLD-GTDCVMLS 327 (505)
Q Consensus 292 ATqmLeSM~~~~~ptraEv~Dv~nav~~-G~D~imLs 327 (505)
...+- |. .++..++.. |+|+|++.
T Consensus 287 ~Ggi~---------t~---~~a~~~l~~g~aD~V~ig 311 (327)
T cd02803 287 VGGIR---------DP---EVAEEILAEGKADLVALG 311 (327)
T ss_pred eCCCC---------CH---HHHHHHHHCCCCCeeeec
Confidence 55432 22 344566777 79999985
No 188
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=73.33 E-value=25 Score=38.14 Aligned_cols=141 Identities=16% Similarity=0.292 Sum_probs=70.4
Q ss_pred hhhcccCCCCEEEEe--------CCeEEEEEEEEeeeCC--------eEEEEEeeCceecCCCCcccCCccccCCCCChh
Q 010627 125 KLAVDVQPGSVILCS--------DGTISFTVLECNVKAG--------LVKCRCENSAMLGERKNVNLPGVIVDLPTLTEK 188 (505)
Q Consensus 125 ~~~~~v~~Gd~I~id--------DG~i~l~V~~v~~~~~--------~i~~~v~~gG~l~s~Kgvnlp~~~~~l~~lte~ 188 (505)
.+.-.++.|+.|++- .|..+|.|.+++..+- .++-+-...|.+.. ....++|.++.+
T Consensus 59 ~l~f~~~~G~~V~v~g~v~~y~~~G~~ql~v~~i~~~G~G~l~~~~~~lk~~L~~eGlfd~-------~~k~~lP~~p~~ 131 (432)
T TIGR00237 59 RLKFRPQNGQQVLVRGGISVYEPRGDYQIICFEMQPAGEGLLQLAYEQLKEKLAAEGLFDQ-------EYKKPLPHFPKR 131 (432)
T ss_pred CCCCCCCCCCEEEEEEEEEEECCCCcEEEEEEEeccCChHHHHHHHHHHHHHHHHCCCCCc-------hhcCCCCCCCCE
Confidence 444557899998875 5778888875432210 11112233344443 333455544432
Q ss_pred cHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEE---EEecCHHHHhc----HHHHHh--cCCeeEEec
Q 010627 189 DKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLM---SKVENQEGVAN----FDDILA--NSDAFMVAR 259 (505)
Q Consensus 189 D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~Ii---akIEt~~av~n----ldeI~~--~sDgImIaR 259 (505)
.| |+-| .+++-++.+...+..+.....+. +.+.-.+|... |+.+-. ..|.|+|+|
T Consensus 132 -------i~-------vits--~~~aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~R 195 (432)
T TIGR00237 132 -------VG-------VITS--QTGAALADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGR 195 (432)
T ss_pred -------EE-------EEeC--CccHHHHHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEec
Confidence 11 2333 45555666666665544322221 22222222111 111111 149999999
Q ss_pred CcccCcCCchh-HHHHHHHHHHHHHHcCCCeEEe
Q 010627 260 GDLGMEIPIEK-IFLAQKVMIYKCNIQGKPVVTA 292 (505)
Q Consensus 260 gDLg~e~~~~~-v~~~qk~Ii~~~~~~gkpvi~A 292 (505)
|-=+.| + ++.=...++++..+...|||.|
T Consensus 196 GGGs~e----DL~~Fn~e~~~rai~~~~~Pvis~ 225 (432)
T TIGR00237 196 GGGSLE----DLWSFNDEKVARAIFLSKIPIISA 225 (432)
T ss_pred CCCCHH----HhhhcCcHHHHHHHHcCCCCEEEe
Confidence 943221 1 2233356677778889999987
No 189
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=73.24 E-value=54 Score=30.30 Aligned_cols=121 Identities=16% Similarity=0.139 Sum_probs=64.1
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHh-cCCeeEEecCc---cc----CcC
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILA-NSDAFMVARGD---LG----MEI 266 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~-~sDgImIaRgD---Lg----~e~ 266 (505)
+.+.+.|+|++.++.-.. ....++... +....+-.-+.|.+- +.+..+ -+|.|++++.. -. ...
T Consensus 66 ~~a~~~g~~~vh~~~~~~--~~~~~~~~~---~~~~~~g~~~~t~~~---~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~ 137 (196)
T cd00564 66 DLALAVGADGVHLGQDDL--PVAEARALL---GPDLIIGVSTHSLEE---ALRAEELGADYVGFGPVFPTPTKPGAGPPL 137 (196)
T ss_pred HHHHHcCCCEEecCcccC--CHHHHHHHc---CCCCEEEeeCCCHHH---HHHHhhcCCCEEEECCccCCCCCCCCCCCC
Confidence 446778999998886332 334444433 223344444445422 223233 37999987431 11 122
Q ss_pred CchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHH
Q 010627 267 PIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTM 343 (505)
Q Consensus 267 ~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m 343 (505)
+++.+..+ +.....|++.+..+ +.. ++..+...|+|++.+.+--..-.-|.++++.+
T Consensus 138 ~~~~~~~~-------~~~~~~pv~a~GGi----------~~~---~i~~~~~~Ga~~i~~g~~i~~~~~~~~~~~~l 194 (196)
T cd00564 138 GLELLREI-------AELVEIPVVAIGGI----------TPE---NAAEVLAAGADGVAVISAITGADDPAAAAREL 194 (196)
T ss_pred CHHHHHHH-------HHhCCCCEEEECCC----------CHH---HHHHHHHcCCCEEEEehHhhcCCCHHHHHHHH
Confidence 22332222 22257898876542 333 44556667999999875433334576666554
No 190
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=72.76 E-value=97 Score=33.52 Aligned_cols=167 Identities=16% Similarity=0.208 Sum_probs=106.3
Q ss_pred CCcccCCccccCCCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHh-ccCCCceEEEEecC-HHHHh-cHHH
Q 010627 171 KNVNLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLG-GHAKNILLMSKVEN-QEGVA-NFDD 247 (505)
Q Consensus 171 Kgvnlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~-~~~~~~~IiakIEt-~~av~-nlde 247 (505)
-|-.-|+.. +|-+++..|.+..-++|+|+|=+.|-.+.+...+..+.+. ..+. .+.+++.. ...++ .++.
T Consensus 12 DG~Q~~g~~-----~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~ea 84 (409)
T COG0119 12 DGEQAPGVS-----FSVEEKIRIAKALDDLGVDYIEAGFPVASPGDFEFVRAIAEKAGL--FICALIAALARAIKRDIEA 84 (409)
T ss_pred cCCcCCCCc-----CCHHHHHHHHHHHHHcCCCEEEEeCCcCChhhHHHHHHHHHhcCc--ccchhhhhhHHhHHhhHHH
Confidence 344445553 4778888885555568999998877665554444444443 2221 22333322 12333 5666
Q ss_pred HHhc-CC--eeEEecCcccCcCCc----hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHH-c
Q 010627 248 ILAN-SD--AFMVARGDLGMEIPI----EKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVL-D 319 (505)
Q Consensus 248 I~~~-sD--gImIaRgDLg~e~~~----~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~-~ 319 (505)
++.+ .| .++++-.|+.++..+ +++...-+..++.++.+|.++... +|.. .+-...-+.+++.++. .
T Consensus 85 ~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~---~Ed~---~rt~~~~l~~~~~~~~~~ 158 (409)
T COG0119 85 LLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFS---AEDA---TRTDPEFLAEVVKAAIEA 158 (409)
T ss_pred HHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE---eecc---ccCCHHHHHHHHHHHHHc
Confidence 6655 36 477788888776543 677788889999999999887641 2222 1333344455555444 5
Q ss_pred CCceeeecccCCCCCCHHHHHHHHHHHHHHHh
Q 010627 320 GTDCVMLSGETAAGAYPEVAVRTMAQICVEAE 351 (505)
Q Consensus 320 G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE 351 (505)
|++.|-| .+|-=+-.|-+.-..+..+.+..-
T Consensus 159 ga~~i~l-~DTvG~~~P~~~~~~i~~l~~~v~ 189 (409)
T COG0119 159 GADRINL-PDTVGVATPNEVADIIEALKANVP 189 (409)
T ss_pred CCcEEEE-CCCcCccCHHHHHHHHHHHHHhCC
Confidence 5999999 688888899998888888776653
No 191
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=72.38 E-value=65 Score=32.44 Aligned_cols=129 Identities=16% Similarity=0.173 Sum_probs=74.8
Q ss_pred HHHhcccccCCCEEEEcCCC-ChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHh-cCCeeEEecCcccCc-CCc
Q 010627 192 DILKWGIPNQIDMIALSFVR-KGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILA-NSDAFMVARGDLGME-IPI 268 (505)
Q Consensus 192 di~~~al~~g~d~V~~sfV~-sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~-~sDgImIaRgDLg~e-~~~ 268 (505)
.+ ..+.++|+|+|.+---- +.+++.++.+...+.| +.+++-+-+.+-++. ..+ -+|.|-+..-||... ..+
T Consensus 125 qi-~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lG--l~~lvevh~~~E~~~---A~~~gadiIgin~rdl~~~~~d~ 198 (260)
T PRK00278 125 QI-YEARAAGADAILLIVAALDDEQLKELLDYAHSLG--LDVLVEVHDEEELER---ALKLGAPLIGINNRNLKTFEVDL 198 (260)
T ss_pred HH-HHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcC--CeEEEEeCCHHHHHH---HHHcCCCEEEECCCCcccccCCH
Confidence 45 66788999998876433 5677888777776654 455555556553332 222 268887776666433 122
Q ss_pred hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHH
Q 010627 269 EKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTM 343 (505)
Q Consensus 269 ~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m 343 (505)
+. -.+++.... ...|++.-.. .=|.. |+..+...|+|+++....-..-..|.++++-+
T Consensus 199 ~~----~~~l~~~~p-~~~~vIaegG---------I~t~e---d~~~~~~~Gad~vlVGsaI~~~~dp~~~~~~l 256 (260)
T PRK00278 199 ET----TERLAPLIP-SDRLVVSESG---------IFTPE---DLKRLAKAGADAVLVGESLMRADDPGAALREL 256 (260)
T ss_pred HH----HHHHHHhCC-CCCEEEEEeC---------CCCHH---HHHHHHHcCCCEEEECHHHcCCCCHHHHHHHH
Confidence 21 123322221 1235553222 22333 45666667999999976666667888887654
No 192
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=71.76 E-value=16 Score=36.96 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=50.4
Q ss_pred ccCCCEEEEcCCCC-----hhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEec-----CcccCcCCc
Q 010627 199 PNQIDMIALSFVRK-----GSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVAR-----GDLGMEIPI 268 (505)
Q Consensus 199 ~~g~d~V~~sfV~s-----a~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaR-----gDLg~e~~~ 268 (505)
..++|+|++|--.+ .++++++|+.+ . ++++ +=|---.+|+.++++.+||.+||. |.....+..
T Consensus 170 ~~~aDaviVtG~~TG~~~~~~~l~~vr~~~---~--~PVl--vGSGvt~~Ni~~~l~~ADG~IVGS~~K~~G~~~n~VD~ 242 (254)
T PF03437_consen 170 RGGADAVIVTGKATGEPPDPEKLKRVREAV---P--VPVL--VGSGVTPENIAEYLSYADGAIVGSYFKKDGKWENPVDP 242 (254)
T ss_pred hcCCCEEEECCcccCCCCCHHHHHHHHhcC---C--CCEE--EecCCCHHHHHHHHHhCCEEEEeeeeeeCCEeCCcCCH
Confidence 46899999998874 45555565544 2 4444 335445689999999999999985 666667776
Q ss_pred hhHHHHHHH
Q 010627 269 EKIFLAQKV 277 (505)
Q Consensus 269 ~~v~~~qk~ 277 (505)
+++..+.+.
T Consensus 243 ~Rv~~fm~~ 251 (254)
T PF03437_consen 243 ERVRRFMEA 251 (254)
T ss_pred HHHHHHHHH
Confidence 666555443
No 193
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=71.52 E-value=45 Score=33.80 Aligned_cols=150 Identities=17% Similarity=0.154 Sum_probs=91.9
Q ss_pred CCCCChhcHHHHHhcccc--cCCCEEEEcCCCChhHHHHHHHHHhccCC-CceEEEEecCHHHHhcHHHHHhcC-CeeEE
Q 010627 182 LPTLTEKDKEDILKWGIP--NQIDMIALSFVRKGSDLVGVRKLLGGHAK-NILLMSKVENQEGVANFDDILANS-DAFMV 257 (505)
Q Consensus 182 l~~lte~D~~di~~~al~--~g~d~V~~sfV~sa~dv~~v~~~l~~~~~-~~~IiakIEt~~av~nldeI~~~s-DgImI 257 (505)
-|..|+.|...+.+.|.+ .++..|+++ +..+..+++.|...+. ++++.+=|=-|.|-...+..+..+ .++--
T Consensus 20 ~p~~T~~~I~~lc~eA~~~~~~faaVcV~----P~~v~~a~~~L~~~~~~~vkv~tVigFP~G~~~t~~K~~Ea~~Ai~~ 95 (257)
T PRK05283 20 NDDDTDEKVIALCHQAKTPVGNTAAICIY----PRFIPIARKTLREQGTPEIRIATVTNFPHGNDDIDIALAETRAAIAY 95 (257)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCeeEEEEC----HHHHHHHHHHhcccCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHc
Confidence 357788888888788888 588888876 7889999999964444 688888887777766655444321 11111
Q ss_pred ecC--cccCcCC------chhHHHHHHHHHHHHHHcCCC--eEEehhhhHhhhcCCCCChHH-HHHHHH-HHHcCCceee
Q 010627 258 ARG--DLGMEIP------IEKIFLAQKVMIYKCNIQGKP--VVTATQMLESMIKSPRPTRAE-ATDVAN-AVLDGTDCVM 325 (505)
Q Consensus 258 aRg--DLg~e~~------~~~v~~~qk~Ii~~~~~~gkp--vi~ATqmLeSM~~~~~ptraE-v~Dv~n-av~~G~D~im 325 (505)
|-- |+-+.++ ++.+..-.+.+.++|.. |+| ||+=|..| |..| +..... ++..|+|.|=
T Consensus 96 GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~-~~~lKVIlEt~~L---------~~ee~i~~a~~~a~~aGADFVK 165 (257)
T PRK05283 96 GADEVDVVFPYRALMAGNEQVGFELVKACKEACAA-NVLLKVIIETGEL---------KDEALIRKASEIAIKAGADFIK 165 (257)
T ss_pred CCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCC-CceEEEEEecccc---------CCHHHHHHHHHHHHHhCCCEEE
Confidence 111 2222222 13444444556666642 455 46655544 4443 554443 7788999875
Q ss_pred ecccCCCCCCH----HHHHHHHHHHHHH
Q 010627 326 LSGETAAGAYP----EVAVRTMAQICVE 349 (505)
Q Consensus 326 Ls~Eta~G~yP----~~~V~~m~~i~~~ 349 (505)
- +.|..| ++.|+.|++.+++
T Consensus 166 T----STGf~~~gAt~edv~lm~~~i~~ 189 (257)
T PRK05283 166 T----STGKVPVNATLEAARIMLEVIRD 189 (257)
T ss_pred c----CCCCCCCCCCHHHHHHHHHHHHh
Confidence 4 455544 6888998877654
No 194
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=71.36 E-value=55 Score=32.93 Aligned_cols=109 Identities=16% Similarity=0.125 Sum_probs=74.3
Q ss_pred cHHHHHhcccccCCCEEEE-----cCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHh---cHHHHHhc-CCeeEEec
Q 010627 189 DKEDILKWGIPNQIDMIAL-----SFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVA---NFDDILAN-SDAFMVAR 259 (505)
Q Consensus 189 D~~di~~~al~~g~d~V~~-----sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~---nldeI~~~-sDgImIaR 259 (505)
|..++.+...+.|++.+.+ -|-.+.+++..+++.. +++|+.| +=+- .+++.... +|+|.+.-
T Consensus 71 ~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v-----~iPvl~k----dfi~~~~qi~~a~~~GAD~VlLi~ 141 (260)
T PRK00278 71 DPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAV-----SLPVLRK----DFIIDPYQIYEARAAGADAILLIV 141 (260)
T ss_pred CHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhc-----CCCEEee----eecCCHHHHHHHHHcCCCEEEEEe
Confidence 5556656667789999987 6778999999999865 4667754 1121 23443333 69998875
Q ss_pred CcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecc
Q 010627 260 GDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG 328 (505)
Q Consensus 260 gDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~ 328 (505)
.+|. +.--+.+++.|+..|..+++-+ -+.+|+ ..+...|+|.+.+++
T Consensus 142 ~~l~--------~~~l~~li~~a~~lGl~~lvev-----------h~~~E~---~~A~~~gadiIgin~ 188 (260)
T PRK00278 142 AALD--------DEQLKELLDYAHSLGLDVLVEV-----------HDEEEL---ERALKLGAPLIGINN 188 (260)
T ss_pred ccCC--------HHHHHHHHHHHHHcCCeEEEEe-----------CCHHHH---HHHHHcCCCEEEECC
Confidence 5653 1356788999999999988632 233433 557778999988764
No 195
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=71.18 E-value=1.1e+02 Score=31.41 Aligned_cols=130 Identities=15% Similarity=0.082 Sum_probs=84.5
Q ss_pred hcccccCCCEEEE-----c---------CCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc-CCeeEEec
Q 010627 195 KWGIPNQIDMIAL-----S---------FVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN-SDAFMVAR 259 (505)
Q Consensus 195 ~~al~~g~d~V~~-----s---------fV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-sDgImIaR 259 (505)
+.|-++|+-.|++ + -.+++++|+++++.. +++||+++=.-. +...+++.++ +|.|
T Consensus 22 ~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~V-----~iPVIGi~K~~~-~~Ea~~L~eaGvDiI---- 91 (283)
T cd04727 22 RIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDAV-----SIPVMAKVRIGH-FVEAQILEALGVDMI---- 91 (283)
T ss_pred HHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHhC-----CCCeEEeeehhH-HHHHHHHHHcCCCEE----
Confidence 4456667777766 2 345677777777755 678998875433 6667777765 5776
Q ss_pred CcccCcCCchhHHHHHHHHHHHHHH-cCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHH
Q 010627 260 GDLGMEIPIEKIFLAQKVMIYKCNI-QGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEV 338 (505)
Q Consensus 260 gDLg~e~~~~~v~~~qk~Ii~~~~~-~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~ 338 (505)
| ..+-+-+ + ..++...+. ++.|++. .-+.+.+.-+++..|+|.|=-+.|--.| +-.|
T Consensus 92 -D-aT~r~rP-~----~~~~~~iK~~~~~l~MA--------------D~stleEal~a~~~Gad~I~TTl~gyT~-~~~~ 149 (283)
T cd04727 92 -D-ESEVLTP-A----DEEHHIDKHKFKVPFVC--------------GARNLGEALRRISEGAAMIRTKGEAGTG-NVVE 149 (283)
T ss_pred -e-ccCCCCc-H----HHHHHHHHHHcCCcEEc--------------cCCCHHHHHHHHHCCCCEEEecCCCCCC-cHHH
Confidence 4 2232211 1 334444443 4777652 1223456678899999999988886666 6789
Q ss_pred HHHHHHHHHHHHhcccCc
Q 010627 339 AVRTMAQICVEAESTLDY 356 (505)
Q Consensus 339 ~V~~m~~i~~~aE~~~~~ 356 (505)
+|+-+++|-.+......|
T Consensus 150 ~~~~~~~i~~~i~~~~gy 167 (283)
T cd04727 150 AVRHMRAVNGEIRKLQSM 167 (283)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 999999998888764433
No 196
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=70.89 E-value=31 Score=35.37 Aligned_cols=108 Identities=17% Similarity=0.144 Sum_probs=61.0
Q ss_pred hcccccCCCEEEEcCCCCh--------hHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc-CCeeEEe-cCcccC
Q 010627 195 KWGIPNQIDMIALSFVRKG--------SDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN-SDAFMVA-RGDLGM 264 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa--------~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-sDgImIa-RgDLg~ 264 (505)
+.+.+.|+|.|.+.+ ..+ +.++++++.+ +.+++.|.- ...+......+. +|+|.+. +| |.
T Consensus 136 ~~~~~~g~~~i~l~~-~~p~~~~~~~~~~i~~l~~~~-----~~pvivK~v--~s~~~a~~a~~~G~d~I~v~~~g--G~ 205 (299)
T cd02809 136 RRAEAAGYKALVLTV-DTPVLGRRLTWDDLAWLRSQW-----KGPLILKGI--LTPEDALRAVDAGADGIVVSNHG--GR 205 (299)
T ss_pred HHHHHcCCCEEEEec-CCCCCCCCCCHHHHHHHHHhc-----CCCEEEeec--CCHHHHHHHHHCCCCEEEEcCCC--CC
Confidence 666778999887754 223 5666666544 357888831 122223333333 6999883 22 22
Q ss_pred cC--CchhHHHHHHHHHHHHHHc--CCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecc
Q 010627 265 EI--PIEKIFLAQKVMIYKCNIQ--GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG 328 (505)
Q Consensus 265 e~--~~~~v~~~qk~Ii~~~~~~--gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~ 328 (505)
.+ +... .. .+.+.+... ..|+|.+.-+- ...|+..++..|+|++|+..
T Consensus 206 ~~~~g~~~-~~---~l~~i~~~~~~~ipvia~GGI~------------~~~d~~kal~lGAd~V~ig~ 257 (299)
T cd02809 206 QLDGAPAT-ID---ALPEIVAAVGGRIEVLLDGGIR------------RGTDVLKALALGADAVLIGR 257 (299)
T ss_pred CCCCCcCH-HH---HHHHHHHHhcCCCeEEEeCCCC------------CHHHHHHHHHcCCCEEEEcH
Confidence 22 1111 11 122222222 48988765543 24788999999999999964
No 197
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=70.45 E-value=77 Score=32.25 Aligned_cols=154 Identities=20% Similarity=0.222 Sum_probs=85.3
Q ss_pred HHHhcHHHHHhc-----CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhc-CCCCChHH--HH
Q 010627 240 EGVANFDDILAN-----SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIK-SPRPTRAE--AT 311 (505)
Q Consensus 240 ~av~nldeI~~~-----sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~-~~~ptraE--v~ 311 (505)
.++.|++++++. +|+++.-+|=+..--+ -..+.+|.++ .|.++.+ .|.| +-. +.
T Consensus 40 ~gl~d~e~~v~~v~~~g~dav~~~~G~~~~~~~--------------~y~~dvpliv---kl~~~t~l~~~~-~~~~~~~ 101 (265)
T COG1830 40 EGLEDPENIVAKVAEAGADAVAMTPGIARSVHR--------------GYAHDVPLIV---KLNGSTSLSPDP-NDQVLVA 101 (265)
T ss_pred ccccCHHHHHHHHHhcCCCEEEecHhHHhhcCc--------------cccCCcCEEE---EeccccccCCCc-ccceeee
Confidence 466666666653 3667665543321111 1123577776 5555533 2222 222 25
Q ss_pred HHHHHHHcCCceeee----cccCCCCCCHHHHHHHHHHHHHHHhccc-C-chhhHHhhhhCCCCCCCchhhHHHHHHHHH
Q 010627 312 DVANAVLDGTDCVML----SGETAAGAYPEVAVRTMAQICVEAESTL-D-YGDVFKRVMQHSPVPMSPLESLASSAVRTA 385 (505)
Q Consensus 312 Dv~nav~~G~D~imL----s~Eta~G~yP~~~V~~m~~i~~~aE~~~-~-~~~~~~~~~~~~~~~~~~~~~ia~~av~~a 385 (505)
.+-.|+..|+||+-. ..|+- -+.++.+.++...+.++= . --..|.+.......+....+ ....|.++|
T Consensus 102 ~ve~ai~lgadAV~~~Vy~Gse~e-----~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~-~v~~aaRla 175 (265)
T COG1830 102 TVEDAIRLGADAVGATVYVGSETE-----REMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDAD-LVGYAARLA 175 (265)
T ss_pred eHHHHHhCCCcEEEEEEecCCcch-----HHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHH-HHHHHHHHH
Confidence 677799999999765 33433 688888888888888641 0 00111211111000111223 444567788
Q ss_pred HhcCCcEE-EEEcCCchHHHHHHhhCCCCcEEEE
Q 010627 386 NSARATLI-LVLTRGGSTAKLVAKYRPGMPILSV 418 (505)
Q Consensus 386 ~~~~a~~I-vv~T~sG~ta~~ls~~RP~~pIiav 418 (505)
.+++|+.| +-+|.+-.+-+.+-++-| +||+.-
T Consensus 176 aelGADIiK~~ytg~~e~F~~vv~~~~-vpVvia 208 (265)
T COG1830 176 AELGADIIKTKYTGDPESFRRVVAACG-VPVVIA 208 (265)
T ss_pred HHhcCCeEeecCCCChHHHHHHHHhCC-CCEEEe
Confidence 99999944 223444477788888888 888765
No 198
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=69.76 E-value=23 Score=35.85 Aligned_cols=91 Identities=19% Similarity=0.182 Sum_probs=57.4
Q ss_pred CChhcHHHHHhcccccC-CCEEEEcCCCCh--hHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEec--
Q 010627 185 LTEKDKEDILKWGIPNQ-IDMIALSFVRKG--SDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVAR-- 259 (505)
Q Consensus 185 lte~D~~di~~~al~~g-~d~V~~sfV~sa--~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaR-- 259 (505)
|.+.+.++..+.+...+ +|+|+++=..+. -|...++.+-.....-+.+++ +--..+|+.++++.+||+.|+-
T Consensus 154 l~~~~~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~~~~~~Pvllg---gGvt~eNv~e~l~~adGviVgS~~ 230 (257)
T TIGR00259 154 LGNRDLESIALDTVERGLADAVILSGKTTGTEVDLELLKLAKETVKDTPVLAG---SGVNLENVEELLSIADGVIVATTI 230 (257)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHHhccCCCeEEEE---CCCCHHHHHHHHhhCCEEEECCCc
Confidence 55666666535555566 999999987776 455555544222222244555 6566789999999999999974
Q ss_pred ---CcccCcCCchhHHHHHHHH
Q 010627 260 ---GDLGMEIPIEKIFLAQKVM 278 (505)
Q Consensus 260 ---gDLg~e~~~~~v~~~qk~I 278 (505)
|+.......+++..+++.+
T Consensus 231 K~~G~~~n~~D~~rV~~Fm~~v 252 (257)
T TIGR00259 231 KKDGVFNNFVDQARVSQFVEKV 252 (257)
T ss_pred ccCCccCCCcCHHHHHHHHHHH
Confidence 3444345555555554433
No 199
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=69.55 E-value=1.1e+02 Score=31.80 Aligned_cols=42 Identities=14% Similarity=0.122 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhc-----CCcEEEEEcCCchHHHHHHhh----CCCCcEEEE
Q 010627 377 LASSAVRTANSA-----RATLILVLTRGGSTAKLVAKY----RPGMPILSV 418 (505)
Q Consensus 377 ia~~av~~a~~~-----~a~~Ivv~T~sG~ta~~ls~~----RP~~pIiav 418 (505)
....+.++..++ ..+.||+.+-||.|+--++++ .|.+.|+++
T Consensus 167 ~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv 217 (329)
T PRK14045 167 YVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGI 217 (329)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEE
Confidence 333444666554 468999999999998765554 599999999
No 200
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=69.52 E-value=70 Score=31.87 Aligned_cols=36 Identities=8% Similarity=0.075 Sum_probs=28.3
Q ss_pred hcccccCCCEEEEcCCC----------ChhHHHHHHHHHhccCCCc
Q 010627 195 KWGIPNQIDMIALSFVR----------KGSDLVGVRKLLGGHAKNI 230 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~----------sa~dv~~v~~~l~~~~~~~ 230 (505)
+.+.++|+|+|=++.-. +++++.++++.+++.|-.+
T Consensus 28 ~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i 73 (283)
T PRK13209 28 AIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRV 73 (283)
T ss_pred HHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCce
Confidence 77889999999887432 6788999999998776543
No 201
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=69.30 E-value=8.6 Score=41.89 Aligned_cols=49 Identities=22% Similarity=0.369 Sum_probs=40.8
Q ss_pred eEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHH
Q 010627 17 TKIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRT 65 (505)
Q Consensus 17 tkIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~ 65 (505)
-.+=+.+|..-.+.+..+.|+++|++++-++.+||..+...+.|+.+|+
T Consensus 213 l~V~aav~~~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~ 261 (450)
T TIGR01302 213 LIVGAAVGTREFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKK 261 (450)
T ss_pred EEEEEEecCchhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHH
Confidence 3455577777677889999999999999999999988887777777776
No 202
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=68.41 E-value=43 Score=33.82 Aligned_cols=114 Identities=15% Similarity=0.145 Sum_probs=70.0
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeE--EecCcccCcCCc-hhH
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFM--VARGDLGMEIPI-EKI 271 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgIm--IaRgDLg~e~~~-~~v 271 (505)
+.+.+.|+|++++|=.. .++..++.+.+.+.|-+ .|..+=.-.--+.+..|.+.++|.+ +++ .|+ .|. ...
T Consensus 111 ~~~~~aGvdGviipDLp-~ee~~~~~~~~~~~gl~--~I~lvap~t~~eri~~i~~~s~gfIY~vs~--~Gv-TG~~~~~ 184 (258)
T PRK13111 111 ADAAEAGVDGLIIPDLP-PEEAEELRAAAKKHGLD--LIFLVAPTTTDERLKKIASHASGFVYYVSR--AGV-TGARSAD 184 (258)
T ss_pred HHHHHcCCcEEEECCCC-HHHHHHHHHHHHHcCCc--EEEEeCCCCCHHHHHHHHHhCCCcEEEEeC--CCC-CCcccCC
Confidence 77788999999999764 57888888888776643 3332222223567888999887755 344 332 222 123
Q ss_pred HHHHHHHHHHHHHc-CCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 272 FLAQKVMIYKCNIQ-GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 272 ~~~qk~Ii~~~~~~-gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
+.-....++.++++ ++|+++..- .-++.++ ..+.. ++|++...
T Consensus 185 ~~~~~~~i~~vk~~~~~pv~vGfG---------I~~~e~v---~~~~~-~ADGviVG 228 (258)
T PRK13111 185 AADLAELVARLKAHTDLPVAVGFG---------ISTPEQA---AAIAA-VADGVIVG 228 (258)
T ss_pred CccHHHHHHHHHhcCCCcEEEEcc---------cCCHHHH---HHHHH-hCCEEEEc
Confidence 33444555555554 899987543 3344444 44333 59998874
No 203
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=68.38 E-value=1.5e+02 Score=30.56 Aligned_cols=114 Identities=18% Similarity=0.145 Sum_probs=73.8
Q ss_pred cCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc-CCeeEEecCcccCcCCchhHHHHHHHHHHHHH-Hc
Q 010627 208 SFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN-SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCN-IQ 285 (505)
Q Consensus 208 sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~-~~ 285 (505)
.-.+++++|+++++.. +++||+|+=--. +...+.+.+. +|.| | ..+..-+ -...+...+ ++
T Consensus 51 ~R~~~p~~I~~I~~~V-----~iPVig~~kigh-~~Ea~~L~~~GvDiI-----D-eTe~lrP-----ade~~~~~K~~f 113 (287)
T TIGR00343 51 ARMSDPKMIKEIMDAV-----SIPVMAKVRIGH-FVEAQILEALGVDYI-----D-ESEVLTP-----ADWTFHIDKKKF 113 (287)
T ss_pred eecCCHHHHHHHHHhC-----CCCEEEEeeccH-HHHHHHHHHcCCCEE-----E-ccCCCCc-----HHHHHHHHHHHc
Confidence 4567788888888765 678988875322 5555555554 5777 4 2222111 122333333 34
Q ss_pred CCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcc
Q 010627 286 GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAEST 353 (505)
Q Consensus 286 gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~ 353 (505)
+.|+..- -+.+.+.-+++..|+|.|--++|--.| +-+|+|+-|+.+-.+....
T Consensus 114 ~vpfmad--------------~~~l~EAlrai~~GadmI~Tt~e~gTg-~v~~av~hlr~~~~~~~~~ 166 (287)
T TIGR00343 114 KVPFVCG--------------ARDLGEALRRINEGAAMIRTKGEAGTG-NIVEAVRHMRKINEEIRQI 166 (287)
T ss_pred CCCEEcc--------------CCCHHHHHHHHHCCCCEEeccccCCCc-cHHHHHHHHHHHHHHHHHH
Confidence 7776531 123455577899999999999997777 6899999999998887653
No 204
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=67.89 E-value=33 Score=34.15 Aligned_cols=108 Identities=11% Similarity=0.084 Sum_probs=67.9
Q ss_pred hcccccCCCEEEE---------------cCCCChhHHHHHHHHHhccCC--CceEEEEecCH--------HHHhcHHHHH
Q 010627 195 KWGIPNQIDMIAL---------------SFVRKGSDLVGVRKLLGGHAK--NILLMSKVENQ--------EGVANFDDIL 249 (505)
Q Consensus 195 ~~al~~g~d~V~~---------------sfV~sa~dv~~v~~~l~~~~~--~~~IiakIEt~--------~av~nldeI~ 249 (505)
+...+.|+++|.+ +.+...+.+..++........ +..|+|..|.. ++++....-.
T Consensus 91 ~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~ 170 (243)
T cd00377 91 RELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYA 170 (243)
T ss_pred HHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHH
Confidence 5667789999998 455566666666666655444 89999996653 4555555555
Q ss_pred hc-CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCC-CChHHHHHHHHHHHcCCceeee
Q 010627 250 AN-SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPR-PTRAEATDVANAVLDGTDCVML 326 (505)
Q Consensus 250 ~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~-ptraEv~Dv~nav~~G~D~imL 326 (505)
++ +|++|+-... -.+.+-+.+++...|+.+- +..++. ++..|+.+ .|+.-+..
T Consensus 171 ~AGAD~v~v~~~~------------~~~~~~~~~~~~~~Pl~~~------~~~~~~~~~~~~l~~------lG~~~v~~ 225 (243)
T cd00377 171 EAGADGIFVEGLK------------DPEEIRAFAEAPDVPLNVN------MTPGGNLLTVAELAE------LGVRRVSY 225 (243)
T ss_pred HcCCCEEEeCCCC------------CHHHHHHHHhcCCCCEEEE------ecCCCCCCCHHHHHH------CCCeEEEE
Confidence 55 7999994221 1145555666688998752 122221 44544433 48887766
No 205
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=67.54 E-value=35 Score=34.67 Aligned_cols=96 Identities=11% Similarity=0.030 Sum_probs=55.6
Q ss_pred HHHhccccc-CCCEEEEcC-------CCChhHHHHHHHHHhccCCCceEEEEec---CHHHHhcHHHHHhc-CCeeEEec
Q 010627 192 DILKWGIPN-QIDMIALSF-------VRKGSDLVGVRKLLGGHAKNILLMSKVE---NQEGVANFDDILAN-SDAFMVAR 259 (505)
Q Consensus 192 di~~~al~~-g~d~V~~sf-------V~sa~dv~~v~~~l~~~~~~~~IiakIE---t~~av~nldeI~~~-sDgImIaR 259 (505)
.+.++.++. |+++|++.= ....|..+-++...+..+.++.||+-+- +.++++......+. +|++|+.+
T Consensus 25 ~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~ 104 (288)
T cd00954 25 AIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAIT 104 (288)
T ss_pred HHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 333788899 999987642 2223333333434444455789999884 45566555555444 69999865
Q ss_pred CcccCcCCchhHHHHHHHHHHHHHHc-CCCeEE
Q 010627 260 GDLGMEIPIEKIFLAQKVMIYKCNIQ-GKPVVT 291 (505)
Q Consensus 260 gDLg~e~~~~~v~~~qk~Ii~~~~~~-gkpvi~ 291 (505)
-... ....+++...-+.| |.+. +.|+++
T Consensus 105 P~y~-~~~~~~i~~~~~~v---~~a~~~lpi~i 133 (288)
T cd00954 105 PFYY-KFSFEEIKDYYREI---IAAAASLPMII 133 (288)
T ss_pred CCCC-CCCHHHHHHHHHHH---HHhcCCCCEEE
Confidence 4332 12334444444444 4455 788876
No 206
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=67.51 E-value=71 Score=30.09 Aligned_cols=121 Identities=17% Similarity=0.162 Sum_probs=66.3
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHh-cCCeeEEecCccc-------CcC
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILA-NSDAFMVARGDLG-------MEI 266 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~-~sDgImIaRgDLg-------~e~ 266 (505)
+.+.+.|+|+|.++.= .-+...++..+. ....|-+-+-|.+-+ .+..+ -+|.+++++=-=+ ...
T Consensus 67 ~la~~~g~~GvHl~~~--~~~~~~~r~~~~---~~~~ig~s~h~~~e~---~~a~~~g~dyi~~~~v~~t~~k~~~~~~~ 138 (196)
T TIGR00693 67 DLALALGADGVHLGQD--DLPASEARALLG---PDKIIGVSTHNLEEL---AEAEAEGADYIGFGPIFPTPTKKDPAPPA 138 (196)
T ss_pred HHHHHcCCCEEecCcc--cCCHHHHHHhcC---CCCEEEEeCCCHHHH---HHHhHcCCCEEEECCccCCCCCCCCCCCC
Confidence 5577889999998742 223455555552 233444444443322 22222 3699998653111 112
Q ss_pred CchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHH
Q 010627 267 PIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRT 342 (505)
Q Consensus 267 ~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~ 342 (505)
+++.+ +.+.+.+ .++|++....+ +. .++..+...|+|++.+.+.-..-+.|.++++.
T Consensus 139 g~~~l----~~~~~~~--~~~pv~a~GGI----------~~---~~~~~~~~~G~~gva~~~~i~~~~dp~~~~~~ 195 (196)
T TIGR00693 139 GVELL----REIAATS--IDIPIVAIGGI----------TL---ENAAEVLAAGADGVAVVSAIMQAADPKAAAKQ 195 (196)
T ss_pred CHHHH----HHHHHhc--CCCCEEEECCc----------CH---HHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHh
Confidence 22222 2222222 24898865443 22 34455667799999998776666678777653
No 207
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=67.24 E-value=1.1e+02 Score=28.79 Aligned_cols=133 Identities=18% Similarity=0.127 Sum_probs=73.7
Q ss_pred HHHHhcccccCCCEEEE-----cCCCC-hhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc-CCeeEEecCccc
Q 010627 191 EDILKWGIPNQIDMIAL-----SFVRK-GSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN-SDAFMVARGDLG 263 (505)
Q Consensus 191 ~di~~~al~~g~d~V~~-----sfV~s-a~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-sDgImIaRgDLg 263 (505)
+++ +.+.+.|+|.|-+ +|+.+ .-....++++-......+.+-.|..... +-++.+.+. +||+.+--+
T Consensus 15 ~~~-~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~--~~~~~~~~~gadgv~vh~~--- 88 (210)
T TIGR01163 15 EEV-KAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPD--RYIEDFAEAGADIITVHPE--- 88 (210)
T ss_pred HHH-HHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCHH--HHHHHHHHcCCCEEEEccC---
Confidence 455 7778889999998 36644 3333333333322122333446666543 446666655 699888311
Q ss_pred CcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecc--cCCCC-CCHHHHH
Q 010627 264 MEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG--ETAAG-AYPEVAV 340 (505)
Q Consensus 264 ~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~--Eta~G-~yP~~~V 340 (505)
+. ......++.++++|...++... +. |..| ...++..++|.+++.+ .+..| .++-..+
T Consensus 89 ---~~----~~~~~~~~~~~~~g~~~~~~~~--------~~-t~~e---~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~ 149 (210)
T TIGR01163 89 ---AS----EHIHRLLQLIKDLGAKAGIVLN--------PA-TPLE---FLEYVLPDVDLVLLMSVNPGFGGQKFIPDTL 149 (210)
T ss_pred ---Cc----hhHHHHHHHHHHcCCcEEEEEC--------CC-CCHH---HHHHHHhhCCEEEEEEEcCCCCcccccHHHH
Confidence 01 1225666888999988776421 11 2222 2445567899987732 12333 5566666
Q ss_pred HHHHHHHH
Q 010627 341 RTMAQICV 348 (505)
Q Consensus 341 ~~m~~i~~ 348 (505)
+.++++.+
T Consensus 150 ~~i~~i~~ 157 (210)
T TIGR01163 150 EKIREVRK 157 (210)
T ss_pred HHHHHHHH
Confidence 66665543
No 208
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=66.92 E-value=48 Score=33.55 Aligned_cols=95 Identities=18% Similarity=0.385 Sum_probs=62.3
Q ss_pred HHHHHhcccccCCCEEEE-cCC-----------CChhHHHHHHHHHhccCCCceEEEEecCHHHH----hcHHHHHh---
Q 010627 190 KEDILKWGIPNQIDMIAL-SFV-----------RKGSDLVGVRKLLGGHAKNILLMSKVENQEGV----ANFDDILA--- 250 (505)
Q Consensus 190 ~~di~~~al~~g~d~V~~-sfV-----------~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av----~nldeI~~--- 250 (505)
.+.+ ..|...|+|||-+ .|+ ..+.++.+.|+.|+ .+++|++-|--+.+. ..++|++.
T Consensus 92 ~aal-~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~---~~v~i~adV~~kh~~~l~~~~~~e~a~~~~ 167 (257)
T TIGR00259 92 VAAL-AIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLG---SEVKILADIVVKHAVHLGNRDLESIALDTV 167 (257)
T ss_pred HHHH-HHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcC---CCcEEEeceeecccCcCCCCCHHHHHHHHH
Confidence 4455 6677789999988 554 34667777777774 579999988554443 46777666
Q ss_pred ---cCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehh
Q 010627 251 ---NSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQ 294 (505)
Q Consensus 251 ---~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATq 294 (505)
.+||+++.----|.+..++.+..+.+ ..-..|+++++-
T Consensus 168 ~~~~aDavivtG~~TG~~~d~~~l~~vr~------~~~~~PvllggG 208 (257)
T TIGR00259 168 ERGLADAVILSGKTTGTEVDLELLKLAKE------TVKDTPVLAGSG 208 (257)
T ss_pred HhcCCCEEEECcCCCCCCCCHHHHHHHHh------ccCCCeEEEECC
Confidence 26999997545555555555443322 123579999875
No 209
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=66.81 E-value=1e+02 Score=29.39 Aligned_cols=128 Identities=19% Similarity=0.157 Sum_probs=69.7
Q ss_pred HHHHhcccccCCCEEEE-----cCCCC----hhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc-CCeeEEecC
Q 010627 191 EDILKWGIPNQIDMIAL-----SFVRK----GSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN-SDAFMVARG 260 (505)
Q Consensus 191 ~di~~~al~~g~d~V~~-----sfV~s----a~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-sDgImIaRg 260 (505)
+.+ +.+.+.|+|+|-+ +|+.+ .+.++++++.+. ....+--++-. ..+.++.+.+. +|++.+--+
T Consensus 20 ~~~-~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~---~~~~v~l~v~d--~~~~i~~~~~~g~d~v~vh~~ 93 (220)
T PRK05581 20 EEV-KAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTK---LPLDVHLMVEN--PDRYVPDFAKAGADIITFHVE 93 (220)
T ss_pred HHH-HHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCC---CcEEEEeeeCC--HHHHHHHHHHcCCCEEEEeec
Confidence 345 7788899999999 98854 555555554432 12223334443 33345666554 599777422
Q ss_pred cccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecc--cCCCC-CCHH
Q 010627 261 DLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG--ETAAG-AYPE 337 (505)
Q Consensus 261 DLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~--Eta~G-~yP~ 337 (505)
. . ......++.++++|..+++++. |. |..| ....+..++|.+++.. .+..| .++-
T Consensus 94 ~-------~---~~~~~~~~~~~~~~~~~g~~~~--------~~-t~~e---~~~~~~~~~d~i~~~~~~~g~tg~~~~~ 151 (220)
T PRK05581 94 A-------S---EHIHRLLQLIKSAGIKAGLVLN--------PA-TPLE---PLEDVLDLLDLVLLMSVNPGFGGQKFIP 151 (220)
T ss_pred c-------c---hhHHHHHHHHHHcCCEEEEEEC--------CC-CCHH---HHHHHHhhCCEEEEEEECCCCCcccccH
Confidence 1 1 1224458889999998887531 11 2222 2344556788776632 23333 2334
Q ss_pred HHHHHHHHH
Q 010627 338 VAVRTMAQI 346 (505)
Q Consensus 338 ~~V~~m~~i 346 (505)
...+.++++
T Consensus 152 ~~~~~i~~~ 160 (220)
T PRK05581 152 EVLEKIREL 160 (220)
T ss_pred HHHHHHHHH
Confidence 444444443
No 210
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=66.31 E-value=19 Score=32.02 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=50.2
Q ss_pred HHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeh
Q 010627 215 DLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTAT 293 (505)
Q Consensus 215 dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~AT 293 (505)
-++.+++.+.+.++.+.+.+.-+.. .-++++++++-.|.|+.+-.+ ...+..+-+.|+++++|+|.+.
T Consensus 57 Ka~~~~~~l~~~np~~~v~~~~~~~-~~~~~~~~~~~~d~vi~~~d~----------~~~~~~l~~~~~~~~~p~i~~~ 124 (135)
T PF00899_consen 57 KAEAAKERLQEINPDVEVEAIPEKI-DEENIEELLKDYDIVIDCVDS----------LAARLLLNEICREYGIPFIDAG 124 (135)
T ss_dssp HHHHHHHHHHHHSTTSEEEEEESHC-SHHHHHHHHHTSSEEEEESSS----------HHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHhcCceeeeeeeccc-ccccccccccCCCEEEEecCC----------HHHHHHHHHHHHHcCCCEEEEE
Confidence 4677778888888888877754443 457788888888988887544 3466778889999999998753
No 211
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=66.31 E-value=74 Score=33.35 Aligned_cols=76 Identities=21% Similarity=0.253 Sum_probs=51.6
Q ss_pred CcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHH
Q 010627 260 GDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVA 339 (505)
Q Consensus 260 gDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~ 339 (505)
...|.-.|+. =|...+.+++. ...||++.-- +-| -+|++.|+..|+||+++..=.+..+.|+.-
T Consensus 227 ~pIGsg~gv~-~p~~i~~~~e~---~~vpVivdAG---------Ig~---~sda~~AmelGadgVL~nSaIa~a~dPv~M 290 (326)
T PRK11840 227 APIGSGLGIQ-NPYTIRLIVEG---ATVPVLVDAG---------VGT---ASDAAVAMELGCDGVLMNTAIAEAKNPVLM 290 (326)
T ss_pred ccccCCCCCC-CHHHHHHHHHc---CCCcEEEeCC---------CCC---HHHHHHHHHcCCCEEEEcceeccCCCHHHH
Confidence 4444444443 34444445444 5688887422 222 368899999999999999888999999988
Q ss_pred HHHHHHHHHHHh
Q 010627 340 VRTMAQICVEAE 351 (505)
Q Consensus 340 V~~m~~i~~~aE 351 (505)
-+.|+.-+++-.
T Consensus 291 a~A~~~av~aGr 302 (326)
T PRK11840 291 ARAMKLAVEAGR 302 (326)
T ss_pred HHHHHHHHHHHH
Confidence 888876655443
No 212
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=66.27 E-value=13 Score=39.14 Aligned_cols=49 Identities=14% Similarity=0.280 Sum_probs=43.1
Q ss_pred EEEEecCCCCCCHHHHHHHHHh--CCcEEEEecCCCCHHHHHHHHHHHHHH
Q 010627 18 KIVCTLGPASRSVPMIEKLLKA--GMNVARFNFSHGSHEYHQETLNNLRTA 66 (505)
Q Consensus 18 kIi~TiGp~~~~~~~i~~li~~--G~~~~RlN~shg~~~~~~~~i~~ir~~ 66 (505)
.+..++|-..++.+.+++|+++ |+|+.=|..+||..+...++|+.+|+.
T Consensus 98 ~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~ 148 (346)
T PRK05096 98 HVMVSTGTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREA 148 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHh
Confidence 4555789888899999999995 999999999999999988888888874
No 213
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=66.25 E-value=76 Score=33.47 Aligned_cols=114 Identities=19% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHhcccccCCCEEEEc----------------------------------------------CCCChhHHHHHHHHH
Q 010627 190 KEDILKWGIPNQIDMIALS----------------------------------------------FVRKGSDLVGVRKLL 223 (505)
Q Consensus 190 ~~di~~~al~~g~d~V~~s----------------------------------------------fV~sa~dv~~v~~~l 223 (505)
.+.+ +.+.+.|++.+++. ...+.+++.++++..
T Consensus 134 ~~l~-~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 212 (344)
T cd02922 134 EELL-KRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHT 212 (344)
T ss_pred HHHH-HHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHHhc
Q ss_pred hccCCCceEEEEecCHHHHhcHHHHHhc----CCeeEE-ecCcccCcCCchhHHHHHHHHHHHHHHcC--CCeEEehhhh
Q 010627 224 GGHAKNILLMSKVENQEGVANFDDILAN----SDAFMV-ARGDLGMEIPIEKIFLAQKVMIYKCNIQG--KPVVTATQML 296 (505)
Q Consensus 224 ~~~~~~~~IiakIEt~~av~nldeI~~~----sDgImI-aRgDLg~e~~~~~v~~~qk~Ii~~~~~~g--kpvi~ATqmL 296 (505)
+.+|+.| ++.+.++...+ +|+|.| +.|--..+ +......+...+.+...+.| .|+|.+.-+-
T Consensus 213 -----~~PvivK-----gv~~~~dA~~a~~~G~d~I~vsnhgG~~~d-~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr 281 (344)
T cd02922 213 -----KLPIVLK-----GVQTVEDAVLAAEYGVDGIVLSNHGGRQLD-TAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVR 281 (344)
T ss_pred -----CCcEEEE-----cCCCHHHHHHHHHcCCCEEEEECCCcccCC-CCCCHHHHHHHHHHHHHHhCCCceEEEeCCCC
Q ss_pred HhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 297 ESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 297 eSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
--.|+..++..|+|++++.
T Consensus 282 ------------~G~Dv~kalaLGA~aV~iG 300 (344)
T cd02922 282 ------------RGTDVLKALCLGAKAVGLG 300 (344)
T ss_pred ------------CHHHHHHHHHcCCCEEEEC
No 214
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=65.64 E-value=38 Score=34.29 Aligned_cols=98 Identities=12% Similarity=0.132 Sum_probs=56.9
Q ss_pred HHHHhcccccCCCEEEEc------CCCChhHHHH-HHHHHhccCCCceEEEEec---CHHHHhcHHHHHhc-CCeeEEec
Q 010627 191 EDILKWGIPNQIDMIALS------FVRKGSDLVG-VRKLLGGHAKNILLMSKVE---NQEGVANFDDILAN-SDAFMVAR 259 (505)
Q Consensus 191 ~di~~~al~~g~d~V~~s------fV~sa~dv~~-v~~~l~~~~~~~~IiakIE---t~~av~nldeI~~~-sDgImIaR 259 (505)
+.+.++.++.|+++|++. +-=|.++=.+ ++...+..+.++.|++-+- +.++++....-.+. +|++|+.+
T Consensus 22 ~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~p 101 (285)
T TIGR00674 22 EKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVT 101 (285)
T ss_pred HHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcC
Confidence 333378889999999874 2233333333 3444444455788999884 33444444443333 59999976
Q ss_pred CcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010627 260 GDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTA 292 (505)
Q Consensus 260 gDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~A 292 (505)
-... ..+.+.+...-+.|.+ +.+.|+++-
T Consensus 102 P~y~-~~~~~~i~~~~~~i~~---~~~~pi~lY 130 (285)
T TIGR00674 102 PYYN-KPTQEGLYQHFKAIAE---EVDLPIILY 130 (285)
T ss_pred CcCC-CCCHHHHHHHHHHHHh---cCCCCEEEE
Confidence 4432 2233455555555554 457898763
No 215
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=65.35 E-value=1.1e+02 Score=31.68 Aligned_cols=116 Identities=17% Similarity=0.123 Sum_probs=75.0
Q ss_pred EcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc-CCeeEEecCcccCcCCchhHHHHHHHHHHHHH-H
Q 010627 207 LSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN-SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCN-I 284 (505)
Q Consensus 207 ~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~-~ 284 (505)
+.-.+++++|.++++.. +++||+|+=.-. +...+.+.+. +|.| | ..+..-+ -...+...+ +
T Consensus 57 ~~Rm~~p~~I~aIk~~V-----~iPVigk~Righ-~~Ea~~L~~~GvDiI-----D-~Te~lrp-----ad~~~~~~K~~ 119 (293)
T PRK04180 57 VARMADPKMIEEIMDAV-----SIPVMAKARIGH-FVEAQILEALGVDYI-----D-ESEVLTP-----ADEEYHIDKWD 119 (293)
T ss_pred eeecCCHHHHHHHHHhC-----CCCeEEeehhhH-HHHHHHHHHcCCCEE-----e-ccCCCCc-----hHHHHHHHHHH
Confidence 45567888998888765 567887764322 5555555554 5777 4 2222111 112222222 3
Q ss_pred cCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhccc
Q 010627 285 QGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTL 354 (505)
Q Consensus 285 ~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~ 354 (505)
++.|+..- -+.+.+.-+++..|+|.|--+||.-.|+ -+|+|+-|+.|..+.-...
T Consensus 120 f~~~fmad--------------~~~l~EAlrai~~GadmI~Ttge~gtg~-v~~av~h~r~~~~~i~~L~ 174 (293)
T PRK04180 120 FTVPFVCG--------------ARNLGEALRRIAEGAAMIRTKGEAGTGN-VVEAVRHMRQINGEIRRLT 174 (293)
T ss_pred cCCCEEcc--------------CCCHHHHHHHHHCCCCeeeccCCCCCcc-HHHHHHHHHHHHHHHHHHh
Confidence 47776531 1235556778999999999999999998 7899999999988776543
No 216
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=65.22 E-value=14 Score=38.78 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=43.5
Q ss_pred EEEEecCCCCCCHHHHHHHHHhC--CcEEEEecCCCCHHHHHHHHHHHHHH
Q 010627 18 KIVCTLGPASRSVPMIEKLLKAG--MNVARFNFSHGSHEYHQETLNNLRTA 66 (505)
Q Consensus 18 kIi~TiGp~~~~~~~i~~li~~G--~~~~RlN~shg~~~~~~~~i~~ir~~ 66 (505)
.+..++|-..++.+.+++|+++| .|+.=|..+||..+...+.|+.||+.
T Consensus 97 ~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~ 147 (343)
T TIGR01305 97 NVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREA 147 (343)
T ss_pred eEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhh
Confidence 34557899889999999999996 99999999999999999999999973
No 217
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=64.64 E-value=30 Score=36.59 Aligned_cols=92 Identities=15% Similarity=0.232 Sum_probs=53.5
Q ss_pred ChhHHHHHHHHHhccCCCceEEEE-ecCHHHHhcHHHHHhc-CCeeEEe-cCcccCcCCchhHHHHHHHHHHHHHHc--C
Q 010627 212 KGSDLVGVRKLLGGHAKNILLMSK-VENQEGVANFDDILAN-SDAFMVA-RGDLGMEIPIEKIFLAQKVMIYKCNIQ--G 286 (505)
Q Consensus 212 sa~dv~~v~~~l~~~~~~~~Iiak-IEt~~av~nldeI~~~-sDgImIa-RgDLg~e~~~~~v~~~qk~Ii~~~~~~--g 286 (505)
+.+++.++++.. +.+|+.| |-++ +......+. +|+|.|. -| |..+. .-+.....+.+.+.+. .
T Consensus 209 ~~~~l~~lr~~~-----~~PvivKgv~~~---~dA~~a~~~G~d~I~vsnhG--Gr~ld--~~~~~~~~l~~i~~a~~~~ 276 (351)
T cd04737 209 SPADIEFIAKIS-----GLPVIVKGIQSP---EDADVAINAGADGIWVSNHG--GRQLD--GGPASFDSLPEIAEAVNHR 276 (351)
T ss_pred CHHHHHHHHHHh-----CCcEEEecCCCH---HHHHHHHHcCCCEEEEeCCC--CccCC--CCchHHHHHHHHHHHhCCC
Confidence 778888888765 3689999 3333 222222333 6999993 11 22221 0011111222223333 4
Q ss_pred CCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 287 KPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 287 kpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
.|+|....+- ...|+..++..|+|++|+.
T Consensus 277 i~vi~dGGIr------------~g~Di~kaLalGA~~V~iG 305 (351)
T cd04737 277 VPIIFDSGVR------------RGEHVFKALASGADAVAVG 305 (351)
T ss_pred CeEEEECCCC------------CHHHHHHHHHcCCCEEEEC
Confidence 7888765543 3579999999999999984
No 218
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=64.39 E-value=45 Score=34.24 Aligned_cols=98 Identities=13% Similarity=0.158 Sum_probs=55.7
Q ss_pred HHHHhcccccCCCEEEEcC------CCChhH-HHHHHHHHhccCCCceEEEEec--CHHHHhcHHHHHhc-CCeeEEecC
Q 010627 191 EDILKWGIPNQIDMIALSF------VRKGSD-LVGVRKLLGGHAKNILLMSKVE--NQEGVANFDDILAN-SDAFMVARG 260 (505)
Q Consensus 191 ~di~~~al~~g~d~V~~sf------V~sa~d-v~~v~~~l~~~~~~~~IiakIE--t~~av~nldeI~~~-sDgImIaRg 260 (505)
+.+.++.++.|+|+|++.= .-|.++ .+-++......+.++.+|+-+- +.++++......+. +|++|+.+-
T Consensus 31 ~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~Gadav~~~pP 110 (303)
T PRK03620 31 REHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERAGADGILLLPP 110 (303)
T ss_pred HHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 3333788999999998732 223333 3333444455566788888873 22333333333332 599999776
Q ss_pred cccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010627 261 DLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTA 292 (505)
Q Consensus 261 DLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~A 292 (505)
... ....+.+....+.+ |.+.+.|+++-
T Consensus 111 ~y~-~~~~~~i~~~f~~v---a~~~~lpi~lY 138 (303)
T PRK03620 111 YLT-EAPQEGLAAHVEAV---CKSTDLGVIVY 138 (303)
T ss_pred CCC-CCCHHHHHHHHHHH---HHhCCCCEEEE
Confidence 543 22334444444444 44568998863
No 219
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=64.12 E-value=1.7e+02 Score=29.69 Aligned_cols=85 Identities=20% Similarity=0.246 Sum_probs=53.3
Q ss_pred CceEEEEe--cCHHHHhcHHHHHhc----CCeeEEecCcccCcCCc--------hhHHHHHHHHHHHHHHc-CCCeEEeh
Q 010627 229 NILLMSKV--ENQEGVANFDDILAN----SDAFMVARGDLGMEIPI--------EKIFLAQKVMIYKCNIQ-GKPVVTAT 293 (505)
Q Consensus 229 ~~~IiakI--Et~~av~nldeI~~~----sDgImIaRgDLg~e~~~--------~~v~~~qk~Ii~~~~~~-gkpvi~AT 293 (505)
+.+++++| .+++.+...-++++. +|+|=+. +.+|. ..-+..-.+++++.++. ++|+.+=.
T Consensus 90 ~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN-----~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi 164 (300)
T TIGR01037 90 PTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELN-----LSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKL 164 (300)
T ss_pred CCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEE-----CCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 35799999 566666655555552 5777662 22221 12234556777777764 88988632
Q ss_pred hhhHhhhcCCCCChHHHHHHHH-HHHcCCceeeecc
Q 010627 294 QMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSG 328 (505)
Q Consensus 294 qmLeSM~~~~~ptraEv~Dv~n-av~~G~D~imLs~ 328 (505)
.|+-.|..+++. +...|+|++.+++
T Consensus 165 ----------~~~~~~~~~~a~~l~~~G~d~i~v~n 190 (300)
T TIGR01037 165 ----------SPNVTDITEIAKAAEEAGADGLTLIN 190 (300)
T ss_pred ----------CCChhhHHHHHHHHHHcCCCEEEEEc
Confidence 245556667776 4568999999975
No 220
>PRK08227 autoinducer 2 aldolase; Validated
Probab=64.02 E-value=17 Score=37.01 Aligned_cols=139 Identities=13% Similarity=0.191 Sum_probs=82.0
Q ss_pred hcccccCCCEEEEc-CCCChhHHHHHHH---HHhccC-CCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcC---
Q 010627 195 KWGIPNQIDMIALS-FVRKGSDLVGVRK---LLGGHA-KNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEI--- 266 (505)
Q Consensus 195 ~~al~~g~d~V~~s-fV~sa~dv~~v~~---~l~~~~-~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~--- 266 (505)
+-|+++|+|.|.+. |+-+..+-+.+++ ...+.. ..+++++....-..+.|=.++++.+-. +| .+||+++
T Consensus 101 eeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaR--ia-aELGADiVK~ 177 (264)
T PRK08227 101 EDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATR--IA-AEMGAQIIKT 177 (264)
T ss_pred HHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHH--HH-HHHcCCEEec
Confidence 55678899988773 3334443333333 222222 236677633222223333333332211 11 3555543
Q ss_pred CchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCC-CChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHH
Q 010627 267 PIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPR-PTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQ 345 (505)
Q Consensus 267 ~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~-ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~ 345 (505)
++.. ...+++++.| ..||++|.- |. +++.-...+++++..|+-|+...--..--..|...++.++.
T Consensus 178 ~y~~--~~f~~vv~a~---~vPVviaGG--------~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~~ 244 (264)
T PRK08227 178 YYVE--EGFERITAGC---PVPIVIAGG--------KKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVHA 244 (264)
T ss_pred CCCH--HHHHHHHHcC---CCcEEEeCC--------CCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHHH
Confidence 2222 4556666655 589998864 22 34555688999999999999987666666789999999998
Q ss_pred HHHH
Q 010627 346 ICVE 349 (505)
Q Consensus 346 i~~~ 349 (505)
|+.+
T Consensus 245 IVh~ 248 (264)
T PRK08227 245 VVHE 248 (264)
T ss_pred HHhC
Confidence 8753
No 221
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=63.73 E-value=55 Score=30.90 Aligned_cols=116 Identities=14% Similarity=0.150 Sum_probs=65.0
Q ss_pred ChhcHHHHHhcccccCCCEEEE--cCCCC--hhHHHHHHHHHhccCCCceEEE--EecCHHHHhcHHHHHhc-CCeeEEe
Q 010627 186 TEKDKEDILKWGIPNQIDMIAL--SFVRK--GSDLVGVRKLLGGHAKNILLMS--KVENQEGVANFDDILAN-SDAFMVA 258 (505)
Q Consensus 186 te~D~~di~~~al~~g~d~V~~--sfV~s--a~dv~~v~~~l~~~~~~~~Iia--kIEt~~av~nldeI~~~-sDgImIa 258 (505)
+..+...+.+...+. ++++=+ ||..+ .+.++.+++. ..+..+++ |+.++. -.-+++..++ +|++.+-
T Consensus 11 ~~~~~~~~~~~l~~~-i~~ieig~~~~~~~g~~~i~~i~~~----~~~~~i~~~~~v~~~~-~~~~~~~~~aGad~i~~h 84 (202)
T cd04726 11 DLEEALELAKKVPDG-VDIIEAGTPLIKSEGMEAVRALREA----FPDKIIVADLKTADAG-ALEAEMAFKAGADIVTVL 84 (202)
T ss_pred CHHHHHHHHHHhhhc-CCEEEcCCHHHHHhCHHHHHHHHHH----CCCCEEEEEEEecccc-HHHHHHHHhcCCCEEEEE
Confidence 444555553544444 888776 56432 3445555443 23455666 666552 1123554543 6888873
Q ss_pred cCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 259 RGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 259 RgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
- +..+..-+++++.|+++|++++++. + ...|.. +...+...|+|.+.+.
T Consensus 85 ~---------~~~~~~~~~~i~~~~~~g~~~~v~~--~------~~~t~~---e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 85 G---------AAPLSTIKKAVKAAKKYGKEVQVDL--I------GVEDPE---KRAKLLKLGVDIVILH 133 (202)
T ss_pred e---------eCCHHHHHHHHHHHHHcCCeEEEEE--e------CCCCHH---HHHHHHHCCCCEEEEc
Confidence 1 1112345778999999999998631 0 012333 3344777899998883
No 222
>PRK15447 putative protease; Provisional
Probab=63.54 E-value=30 Score=35.61 Aligned_cols=68 Identities=16% Similarity=0.064 Sum_probs=49.4
Q ss_pred cCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 251 NSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 251 ~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
-+|+|.+|-..++...++ -..-.+++++.|+++||.+.++|.-+ .....|...+...+..|.|+|+.+
T Consensus 28 gaDaVY~g~~~~~~R~~f--~~~~l~e~v~~~~~~gkkvyva~p~i-------~~~~~e~~~l~~~l~~~~~~v~v~ 95 (301)
T PRK15447 28 PVDIVYLGETVCSKRREL--KVGDWLELAERLAAAGKEVVLSTLAL-------VEAPSELKELRRLVENGEFLVEAN 95 (301)
T ss_pred CCCEEEECCccCCCccCC--CHHHHHHHHHHHHHcCCEEEEEeccc-------ccCHHHHHHHHHHHhcCCCEEEEe
Confidence 379999997777765443 22445678888999999999987432 112458888888888899988863
No 223
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=63.48 E-value=50 Score=34.92 Aligned_cols=146 Identities=13% Similarity=0.099 Sum_probs=92.6
Q ss_pred hcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCC
Q 010627 188 KDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIP 267 (505)
Q Consensus 188 ~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~ 267 (505)
...+.| +...+.|+|.|-+. |.+.++.+.++.+-... +++++|-|--- .--.+.++-.-+|++=|.||.+|
T Consensus 43 atv~Qi-~~L~~aGceiVRva-v~~~~~a~al~~I~~~~--~iPlvADIHFd-~~lAl~a~~~G~~~iRINPGNig---- 113 (360)
T PRK00366 43 ATVAQI-KRLARAGCEIVRVA-VPDMEAAAALPEIKKQL--PVPLVADIHFD-YRLALAAAEAGADALRINPGNIG---- 113 (360)
T ss_pred HHHHHH-HHHHHcCCCEEEEc-cCCHHHHHhHHHHHHcC--CCCEEEecCCC-HHHHHHHHHhCCCEEEECCCCCC----
Confidence 334455 55567899988776 57778888877766543 68999988421 22223444445899999999994
Q ss_pred chhHHHHHHHHHHHHHHcCCCe--EEehhhhHhhhcC--CCCChHHH-----HHHHHHHHcCCceeeecccCCCCCCHHH
Q 010627 268 IEKIFLAQKVMIYKCNIQGKPV--VTATQMLESMIKS--PRPTRAEA-----TDVANAVLDGTDCVMLSGETAAGAYPEV 338 (505)
Q Consensus 268 ~~~v~~~qk~Ii~~~~~~gkpv--i~ATqmLeSM~~~--~~ptraEv-----~Dv~nav~~G~D~imLs~Eta~G~yP~~ 338 (505)
....--+.++++|+++|+|+ ++-.-=|+.-... ..||..-+ ..+.-+-..|++=+.+|--.+ .|..
T Consensus 114 --~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS~KsS---~v~~ 188 (360)
T PRK00366 114 --KRDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKISVKAS---DVQD 188 (360)
T ss_pred --chHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcC---CHHH
Confidence 44566789999999999997 4433333332222 12443212 233345678999999986554 4556
Q ss_pred HHHHHHHHH
Q 010627 339 AVRTMAQIC 347 (505)
Q Consensus 339 ~V~~m~~i~ 347 (505)
+++.-+.+.
T Consensus 189 ~i~ayrlla 197 (360)
T PRK00366 189 LIAAYRLLA 197 (360)
T ss_pred HHHHHHHHH
Confidence 666555544
No 224
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=63.44 E-value=42 Score=35.23 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=64.1
Q ss_pred CCCEEEEcCC----------CChhHHHHHHHHHhccCC----CceEEEEecCHHHHhcHHHHHhc-----CCeeEEecC-
Q 010627 201 QIDMIALSFV----------RKGSDLVGVRKLLGGHAK----NILLMSKVENQEGVANFDDILAN-----SDAFMVARG- 260 (505)
Q Consensus 201 g~d~V~~sfV----------~sa~dv~~v~~~l~~~~~----~~~IiakIEt~~av~nldeI~~~-----sDgImIaRg- 260 (505)
++|++-+.|- +.++.+.++-+.+++.-. +++|++||---...+++.++++. +|||.+-=+
T Consensus 169 ~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 169 YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence 5999877652 233444444444433212 48999999732222234555543 588887422
Q ss_pred ----cccC-----c---C-CchhHHHHHHHHHHHHHHc--CCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceee
Q 010627 261 ----DLGM-----E---I-PIEKIFLAQKVMIYKCNIQ--GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVM 325 (505)
Q Consensus 261 ----DLg~-----e---~-~~~~v~~~qk~Ii~~~~~~--gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~im 325 (505)
|+.. . + |....+...+.+-+...+. +.|++-...+. ...|+...+..|+|+|+
T Consensus 249 ~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~------------s~eda~e~l~aGAd~V~ 316 (344)
T PRK05286 249 LSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGID------------SAEDAYEKIRAGASLVQ 316 (344)
T ss_pred cccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCC------------CHHHHHHHHHcCCCHHH
Confidence 1110 0 0 1122233444444444444 57888766544 34677888889999999
Q ss_pred eccc
Q 010627 326 LSGE 329 (505)
Q Consensus 326 Ls~E 329 (505)
+..-
T Consensus 317 v~~~ 320 (344)
T PRK05286 317 IYSG 320 (344)
T ss_pred HHHH
Confidence 9643
No 225
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=63.38 E-value=1.3e+02 Score=30.44 Aligned_cols=70 Identities=20% Similarity=0.241 Sum_probs=48.0
Q ss_pred CCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHH
Q 010627 266 IPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQ 345 (505)
Q Consensus 266 ~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~ 345 (505)
.|+.. +...+.|.+. .+.|||+... +=| -+|++.++..|+|++++..=-+.++.|..-.+.+..
T Consensus 159 ~Gi~~-~~~I~~I~e~---~~vpVI~egG---------I~t---peda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~ 222 (248)
T cd04728 159 QGLLN-PYNLRIIIER---ADVPVIVDAG---------IGT---PSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKL 222 (248)
T ss_pred CCCCC-HHHHHHHHHh---CCCcEEEeCC---------CCC---HHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHH
Confidence 34433 4444444443 4789987432 222 257789999999999998888888899988888877
Q ss_pred HHHHHh
Q 010627 346 ICVEAE 351 (505)
Q Consensus 346 i~~~aE 351 (505)
-+++-.
T Consensus 223 Av~aGr 228 (248)
T cd04728 223 AVEAGR 228 (248)
T ss_pred HHHHHH
Confidence 665443
No 226
>PRK00208 thiG thiazole synthase; Reviewed
Probab=63.27 E-value=1.7e+02 Score=29.54 Aligned_cols=65 Identities=22% Similarity=0.274 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHh
Q 010627 272 FLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAE 351 (505)
Q Consensus 272 ~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE 351 (505)
+...+.+.+. .+.|||+... +=| -+|++.++..|+|++++..=-+..+.|..-.+.+..-++.-.
T Consensus 164 ~~~i~~i~e~---~~vpVIveaG---------I~t---peda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~aGr 228 (250)
T PRK00208 164 PYNLRIIIEQ---ADVPVIVDAG---------IGT---PSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEAGR 228 (250)
T ss_pred HHHHHHHHHh---cCCeEEEeCC---------CCC---HHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHHHH
Confidence 4444444443 4789987432 222 257799999999999998888888899988888877665444
No 227
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=63.26 E-value=31 Score=36.40 Aligned_cols=80 Identities=18% Similarity=0.212 Sum_probs=54.1
Q ss_pred HHhcHHHHHhc-CCeeEEecCcccCcCCch--hHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHH--HHHHHH
Q 010627 241 GVANFDDILAN-SDAFMVARGDLGMEIPIE--KIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAE--ATDVAN 315 (505)
Q Consensus 241 av~nldeI~~~-sDgImIaRgDLg~e~~~~--~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraE--v~Dv~n 315 (505)
.++.+...++. +|+|.+|=-+++.--... .... .++.++.|+++||-++++.+++= .+...| ...+..
T Consensus 15 ~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~-l~e~i~~ah~~gkk~~V~~N~~~------~~~~~~~~~~~l~~ 87 (347)
T COG0826 15 NLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVED-LAEAVELAHSAGKKVYVAVNTLL------HNDELETLERYLDR 87 (347)
T ss_pred CHHHHHHHHHcCCCEEEeCCcccccccccccCCHHH-HHHHHHHHHHcCCeEEEEecccc------ccchhhHHHHHHHH
Confidence 34444444444 799999855677665542 2222 57889999999999998876551 222222 355677
Q ss_pred HHHcCCceeeec
Q 010627 316 AVLDGTDCVMLS 327 (505)
Q Consensus 316 av~~G~D~imLs 327 (505)
++..|+|++.++
T Consensus 88 l~e~GvDaviv~ 99 (347)
T COG0826 88 LVELGVDAVIVA 99 (347)
T ss_pred HHHcCCCEEEEc
Confidence 888999999995
No 228
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=63.03 E-value=51 Score=33.08 Aligned_cols=93 Identities=14% Similarity=0.110 Sum_probs=55.4
Q ss_pred hcccccCCCEEEEcC------CCChhHHHHH-HHHHhccCCCceEEEEecC---HHHHhcHHHHHhc-CCeeEEecCccc
Q 010627 195 KWGIPNQIDMIALSF------VRKGSDLVGV-RKLLGGHAKNILLMSKVEN---QEGVANFDDILAN-SDAFMVARGDLG 263 (505)
Q Consensus 195 ~~al~~g~d~V~~sf------V~sa~dv~~v-~~~l~~~~~~~~IiakIEt---~~av~nldeI~~~-sDgImIaRgDLg 263 (505)
++.++.|+++|++.= --|.++=+++ +...+..+.++.|++.+=. .++++......+. +|++|+.+-...
T Consensus 25 ~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~ 104 (281)
T cd00408 25 EFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYN 104 (281)
T ss_pred HHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCC
Confidence 788899999987542 2233443333 3333444557889998843 3344444443333 699999775544
Q ss_pred CcCCchhHHHHHHHHHHHHHHcCCCeEE
Q 010627 264 MEIPIEKIFLAQKVMIYKCNIQGKPVVT 291 (505)
Q Consensus 264 ~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ 291 (505)
. .+.+.+...-+.|.++ .+.|+++
T Consensus 105 ~-~~~~~~~~~~~~ia~~---~~~pi~i 128 (281)
T cd00408 105 K-PSQEGIVAHFKAVADA---SDLPVIL 128 (281)
T ss_pred C-CCHHHHHHHHHHHHhc---CCCCEEE
Confidence 3 3445555555555554 6788875
No 229
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=62.79 E-value=10 Score=41.95 Aligned_cols=45 Identities=18% Similarity=0.409 Sum_probs=38.6
Q ss_pred EecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHH
Q 010627 21 CTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRT 65 (505)
Q Consensus 21 ~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~ 65 (505)
+.+|+.-.+.+.++.|+++|+++.=++.+||......+.|+.+|+
T Consensus 234 aavg~~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~ 278 (495)
T PTZ00314 234 AAISTRPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKS 278 (495)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHh
Confidence 467876667899999999999999999999988887777887776
No 230
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=62.70 E-value=1.3e+02 Score=29.75 Aligned_cols=119 Identities=9% Similarity=0.018 Sum_probs=70.9
Q ss_pred hcccccCCCEEEEcC------C--CChhHHHHHHHHHhccCCCceEEEE--------e------cCHHHHhcHHHHHhc-
Q 010627 195 KWGIPNQIDMIALSF------V--RKGSDLVGVRKLLGGHAKNILLMSK--------V------ENQEGVANFDDILAN- 251 (505)
Q Consensus 195 ~~al~~g~d~V~~sf------V--~sa~dv~~v~~~l~~~~~~~~Iiak--------I------Et~~av~nldeI~~~- 251 (505)
+.+.++|+++|=+.. . -+..+++++++.+.+.|-.+..+.- + +..++++.+...++.
T Consensus 20 ~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a 99 (275)
T PRK09856 20 RDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMA 99 (275)
T ss_pred HHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHHHHH
Confidence 788899999998742 1 2345789999999877654322210 0 122345555555544
Q ss_pred ----CCeeEEecCcccCcCCc----hhHHHHHHHHHHHHHHcCCCeEEehhhhHhh---hcCCCCChHHHHHHHHHHH
Q 010627 252 ----SDAFMVARGDLGMEIPI----EKIFLAQKVMIYKCNIQGKPVVTATQMLESM---IKSPRPTRAEATDVANAVL 318 (505)
Q Consensus 252 ----sDgImIaRgDLg~e~~~----~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM---~~~~~ptraEv~Dv~nav~ 318 (505)
++.+.+.+|..+..-.. +.+...-+++.+.|.++|..+.+ |.| ..+..+|.+++.++.+.+-
T Consensus 100 ~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~i-----E~~~~~~~~~~~t~~~~~~l~~~~~ 172 (275)
T PRK09856 100 KEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLIL-----EPLTPYESNVVCNANDVLHALALVP 172 (275)
T ss_pred HHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEE-----ecCCCCcccccCCHHHHHHHHHHcC
Confidence 36777766654432222 34445567788888888876553 332 1234567777777777653
No 231
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=62.53 E-value=68 Score=33.03 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=69.0
Q ss_pred CceEEEEecCHHHHhcHHHHHhc-CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhh---HhhhcCCC
Q 010627 229 NILLMSKVENQEGVANFDDILAN-SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQML---ESMIKSPR 304 (505)
Q Consensus 229 ~~~IiakIEt~~av~nldeI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmL---eSM~~~~~ 304 (505)
.+++.-.+.+. .++.+.+-++. .+-||+..- ++|.++....-+++.+.|+.+|.++=..-.-+ |-++....
T Consensus 77 ~vPV~lHLDH~-~~~~i~~ai~~GftSVm~d~S----~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s 151 (293)
T PRK07315 77 TVPVAIHLDHG-HYEDALECIEVGYTSIMFDGS----HLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKG 151 (293)
T ss_pred CCcEEEECCCC-CHHHHHHHHHcCCCEEEEcCC----CCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCcc
Confidence 56888888886 55555554443 578998643 46788888999999999999999983222211 22211111
Q ss_pred CChHHHHHHHHHHHcCCceeeecccCCCCCCHH
Q 010627 305 PTRAEATDVANAVLDGTDCVMLSGETAAGAYPE 337 (505)
Q Consensus 305 ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~ 337 (505)
. .....+...++..|+|++-++-=|..|.||-
T Consensus 152 ~-~t~peea~~f~~tgvD~LAv~iG~vHG~y~t 183 (293)
T PRK07315 152 E-LAPIEDAKAMVETGIDFLAAGIGNIHGPYPE 183 (293)
T ss_pred C-CCCHHHHHHHHHcCCCEEeeccccccccCCC
Confidence 1 1223344556688999999998899999973
No 232
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=62.30 E-value=1.5e+02 Score=30.01 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=71.0
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCc
Q 010627 277 VMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDY 356 (505)
Q Consensus 277 ~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 356 (505)
-+...|+++|.|+.+- .|..+...-+...-..|++.+...+... + ...++++...++.++-+. ..|
T Consensus 67 alA~~a~~~G~~~~i~-----------vp~~~~~~k~~~~~~~Ga~v~~~~~~~~-~-~~~~~~~~a~~~~~~~~~-~~~ 132 (291)
T cd01561 67 GLAMVAAAKGYRFIIV-----------MPETMSEEKRKLLRALGAEVILTPEAEA-D-GMKGAIAKARELAAETPN-AFW 132 (291)
T ss_pred HHHHHHHHcCCeEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCCCCc-C-CHHHHHHHHHHHHhhCCC-cEE
Confidence 5566899999998763 2444444555666778999887753211 1 235666666665443211 111
Q ss_pred hhhHHhhhhCCCCCCCchhhHH-HHHHHHHHhcC--CcEEEEEcCCchHHHH----HHhhCCCCcEEEE
Q 010627 357 GDVFKRVMQHSPVPMSPLESLA-SSAVRTANSAR--ATLILVLTRGGSTAKL----VAKYRPGMPILSV 418 (505)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~ia-~~av~~a~~~~--a~~Ivv~T~sG~ta~~----ls~~RP~~pIiav 418 (505)
...| . .|. ..+.-. .-+.++.++++ .+.||+.+-+|.++-- +..++|...|+++
T Consensus 133 ~~~~-----~--~p~-~~~g~~~t~~~Ei~~ql~~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~V 193 (291)
T cd01561 133 LNQF-----E--NPA-NPEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGV 193 (291)
T ss_pred ecCC-----C--Cch-HHHHHHHHHHHHHHHHcCCCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 1000 0 011 112222 33566677775 6999999999998654 4456799999999
No 233
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=62.10 E-value=28 Score=34.85 Aligned_cols=83 Identities=20% Similarity=0.233 Sum_probs=52.3
Q ss_pred CeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCC
Q 010627 253 DAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAA 332 (505)
Q Consensus 253 DgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~ 332 (505)
..+|---.-.|.-.|+.. +...+.|++ +...|||+- ...-+ -+|.+.|.+.|+|++++..-.|.
T Consensus 146 aavMPlgsPIGSg~Gi~n-~~~l~~i~~---~~~vPvIvD---------AGiG~---pSdaa~AMElG~daVLvNTAiA~ 209 (247)
T PF05690_consen 146 AAVMPLGSPIGSGRGIQN-PYNLRIIIE---RADVPVIVD---------AGIGT---PSDAAQAMELGADAVLVNTAIAK 209 (247)
T ss_dssp SEBEEBSSSTTT---SST-HHHHHHHHH---HGSSSBEEE---------S---S---HHHHHHHHHTT-SEEEESHHHHT
T ss_pred CEEEecccccccCcCCCC-HHHHHHHHH---hcCCcEEEe---------CCCCC---HHHHHHHHHcCCceeehhhHHhc
Confidence 455654444455555544 233444443 348999872 22222 26779999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 010627 333 GAYPEVAVRTMAQICVEAE 351 (505)
Q Consensus 333 G~yP~~~V~~m~~i~~~aE 351 (505)
.+.|+.-.+.|+.-++.-.
T Consensus 210 A~dPv~MA~Af~~AV~AGR 228 (247)
T PF05690_consen 210 AKDPVAMARAFKLAVEAGR 228 (247)
T ss_dssp SSSHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 9999998888877655433
No 234
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=62.07 E-value=76 Score=31.27 Aligned_cols=129 Identities=10% Similarity=0.068 Sum_probs=71.7
Q ss_pred cHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHH-------HhcHHHHH----hcCCeeEE
Q 010627 189 DKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEG-------VANFDDIL----ANSDAFMV 257 (505)
Q Consensus 189 D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~a-------v~nldeI~----~~sDgImI 257 (505)
+.+++ +..++.|++.|++.-. ...+ ..+++++...+.+ .++.-|....+ ..++.+.+ +.++.+++
T Consensus 89 ~~edv-~~~l~~Ga~~viigt~-~~~~-~~~~~~~~~~~~~-~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 164 (233)
T cd04723 89 SLENA-QEWLKRGASRVIVGTE-TLPS-DDDEDRLAALGEQ-RLVLSLDFRGGQLLKPTDFIGPEELLRRLAKWPEELIV 164 (233)
T ss_pred CHHHH-HHHHHcCCCeEEEcce-eccc-hHHHHHHHhcCCC-CeEEEEeccCCeeccccCcCCHHHHHHHHHHhCCeEEE
Confidence 36677 7778889998887653 3444 5556666555442 45555554333 12233333 33566776
Q ss_pred ecCcccCcCCch--hHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCC
Q 010627 258 ARGDLGMEIPIE--KIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAY 335 (505)
Q Consensus 258 aRgDLg~e~~~~--~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~y 335 (505)
. |+..+-... .+. .-++ .++..+.|++.+.-+ =+ ..|+..+...|+|++++..==-.|++
T Consensus 165 ~--di~~~G~~~g~~~~-~~~~---i~~~~~ipvi~~GGi---------~s---~edi~~l~~~G~~~vivGsal~~g~~ 226 (233)
T cd04723 165 L--DIDRVGSGQGPDLE-LLER---LAARADIPVIAAGGV---------RS---VEDLELLKKLGASGALVASALHDGGL 226 (233)
T ss_pred E--EcCccccCCCcCHH-HHHH---HHHhcCCCEEEeCCC---------CC---HHHHHHHHHcCCCEEEEehHHHcCCC
Confidence 3 443322111 111 1223 334568999987653 23 34555666679999999755555666
Q ss_pred HHHH
Q 010627 336 PEVA 339 (505)
Q Consensus 336 P~~~ 339 (505)
|.+.
T Consensus 227 ~~~~ 230 (233)
T cd04723 227 TLED 230 (233)
T ss_pred CHHH
Confidence 6543
No 235
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=61.81 E-value=1e+02 Score=32.58 Aligned_cols=96 Identities=20% Similarity=0.143 Sum_probs=57.3
Q ss_pred hhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHH-----------hcHHHHHhc-CCe
Q 010627 187 EKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGV-----------ANFDDILAN-SDA 254 (505)
Q Consensus 187 e~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av-----------~nldeI~~~-sDg 254 (505)
-.|.+.+.+.+.+.|+|.++++ .-.++.+......++.+|.|+-+...+ -..++-++. +|+
T Consensus 90 l~dp~~~i~~a~~~g~dAv~~~-------~G~l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdA 162 (348)
T PRK09250 90 YFDPENIVKLAIEAGCNAVAST-------LGVLEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVA 162 (348)
T ss_pred ccCHHHHHHHHHhcCCCEEEeC-------HHHHHhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCE
Confidence 3455545488889999999998 223333333334467788888764444 234555554 565
Q ss_pred eEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEE
Q 010627 255 FMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVT 291 (505)
Q Consensus 255 ImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ 291 (505)
|-+. -.+|-+.- .+...--.++.+.|++.|.|++.
T Consensus 163 V~~t-vy~Gs~~E-~~ml~~l~~i~~ea~~~GlPlv~ 197 (348)
T PRK09250 163 VGAT-IYFGSEES-RRQIEEISEAFEEAHELGLATVL 197 (348)
T ss_pred EEEE-EecCCHHH-HHHHHHHHHHHHHHHHhCCCEEE
Confidence 5442 11121111 23444457899999999999885
No 236
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=61.71 E-value=1.4e+02 Score=29.47 Aligned_cols=130 Identities=10% Similarity=0.115 Sum_probs=68.2
Q ss_pred cHHHHHhcccccCCCEEEEcC--CCChhHHHHHHHHHhccCCCceEEEEec---------------------CHHHHhcH
Q 010627 189 DKEDILKWGIPNQIDMIALSF--VRKGSDLVGVRKLLGGHAKNILLMSKVE---------------------NQEGVANF 245 (505)
Q Consensus 189 D~~di~~~al~~g~d~V~~sf--V~sa~dv~~v~~~l~~~~~~~~IiakIE---------------------t~~av~nl 245 (505)
+.+|+ +..++.|++.|.+.- .++++.+.++.+.. +.+ .++.-+. ....++-+
T Consensus 85 s~~~~-~~~l~~Ga~~Viigt~~l~~p~~~~ei~~~~---g~~-~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 159 (253)
T PRK02083 85 SVEDA-RRLLRAGADKVSINSAAVANPELISEAADRF---GSQ-CIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWA 159 (253)
T ss_pred CHHHH-HHHHHcCCCEEEEChhHhhCcHHHHHHHHHc---CCC-CEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHH
Confidence 44555 555667999887763 45666676666554 211 2222221 11112222
Q ss_pred HHHHhc-CCeeEEecCc-ccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHH-cCCc
Q 010627 246 DDILAN-SDAFMVARGD-LGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVL-DGTD 322 (505)
Q Consensus 246 deI~~~-sDgImIaRgD-Lg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~-~G~D 322 (505)
+++.+. .|++++-.-+ =|..-++ ++ ..+-+.++..+.|+|.+.-+. ...|+..+.. .|+|
T Consensus 160 ~~~~~~g~~~ii~~~i~~~g~~~g~-d~----~~i~~~~~~~~ipvia~GGv~------------s~~d~~~~~~~~G~~ 222 (253)
T PRK02083 160 KEVEELGAGEILLTSMDRDGTKNGY-DL----ELTRAVSDAVNVPVIASGGAG------------NLEHFVEAFTEGGAD 222 (253)
T ss_pred HHHHHcCCCEEEEcCCcCCCCCCCc-CH----HHHHHHHhhCCCCEEEECCCC------------CHHHHHHHHHhCCcc
Confidence 333333 4777663111 1111122 21 223334455689999877644 3456666665 5999
Q ss_pred eeeecccCCCCCCHHHHH
Q 010627 323 CVMLSGETAAGAYPEVAV 340 (505)
Q Consensus 323 ~imLs~Eta~G~yP~~~V 340 (505)
++|.+.==-.|.++.+-+
T Consensus 223 gvivg~al~~~~~~~~~~ 240 (253)
T PRK02083 223 AALAASIFHFGEITIGEL 240 (253)
T ss_pred EEeEhHHHHcCCCCHHHH
Confidence 999964444677776654
No 237
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=61.66 E-value=15 Score=35.71 Aligned_cols=106 Identities=16% Similarity=0.149 Sum_probs=60.7
Q ss_pred EEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCc------------ccCcCCchhHH
Q 010627 205 IALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGD------------LGMEIPIEKIF 272 (505)
Q Consensus 205 V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgD------------Lg~e~~~~~v~ 272 (505)
|.+=...+++++..+-+.|-+.|-+. +=--.-|+.+++-+..+.+..+.+.||-|- .|+++=. -|
T Consensus 11 iaVir~~~~~~a~~~~~al~~gGi~~-iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~Fiv--SP 87 (196)
T PF01081_consen 11 IAVIRGDDPEDAVPIAEALIEGGIRA-IEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIV--SP 87 (196)
T ss_dssp EEEETTSSGGGHHHHHHHHHHTT--E-EEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEE--ES
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCE-EEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEE--CC
Confidence 44445566677776666665544321 222234666676666666655556676552 1222111 12
Q ss_pred HHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 273 LAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 273 ~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
..-..+++.|+++|.|++= --.=-+++..|...|+|.+=+=
T Consensus 88 ~~~~~v~~~~~~~~i~~iP--------------G~~TptEi~~A~~~G~~~vK~F 128 (196)
T PF01081_consen 88 GFDPEVIEYAREYGIPYIP--------------GVMTPTEIMQALEAGADIVKLF 128 (196)
T ss_dssp S--HHHHHHHHHHTSEEEE--------------EESSHHHHHHHHHTT-SEEEET
T ss_pred CCCHHHHHHHHHcCCcccC--------------CcCCHHHHHHHHHCCCCEEEEe
Confidence 3457899999999999862 1112356688899999998873
No 238
>PRK08005 epimerase; Validated
Probab=61.57 E-value=1.3e+02 Score=29.52 Aligned_cols=127 Identities=10% Similarity=0.019 Sum_probs=76.3
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEe---cCcccCcCCchhH
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVA---RGDLGMEIPIEKI 271 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIa---RgDLg~e~~~~~v 271 (505)
+.-.++|+|.|.+.+ ++..+..++-+.+++.|.+..|--+-+| .++.++.++...|.|+|= ||-=| ..-+
T Consensus 75 ~~~~~~gad~It~H~-Ea~~~~~~~l~~Ik~~G~k~GlAlnP~T--p~~~i~~~l~~vD~VlvMsV~PGf~G----Q~f~ 147 (210)
T PRK08005 75 PWLAAIRPGWIFIHA-ESVQNPSEILADIRAIGAKAGLALNPAT--PLLPYRYLALQLDALMIMTSEPDGRG----QQFI 147 (210)
T ss_pred HHHHHhCCCEEEEcc-cCccCHHHHHHHHHHcCCcEEEEECCCC--CHHHHHHHHHhcCEEEEEEecCCCcc----ceec
Confidence 444678999887665 6556777777888888888888888888 467788999999998882 22222 2233
Q ss_pred HHHHHHHHHHHHHcCC-CeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCC--CCCHHHHHHHH
Q 010627 272 FLAQKVMIYKCNIQGK-PVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAA--GAYPEVAVRTM 343 (505)
Q Consensus 272 ~~~qk~Ii~~~~~~gk-pvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~--G~yP~~~V~~m 343 (505)
+..-++|-+..+.... .+-+ .. -=+. .-+...+..|+|.+++. |++ ...|.+.++.|
T Consensus 148 ~~~~~KI~~l~~~~~~~~I~V---------DG-GI~~---~~i~~l~~aGad~~V~G--saiF~~~d~~~~~~~~ 207 (210)
T PRK08005 148 AAMCEKVSQSREHFPAAECWA---------DG-GITL---RAARLLAAAGAQHLVIG--RALFTTANYDVTLSQF 207 (210)
T ss_pred HHHHHHHHHHHHhcccCCEEE---------EC-CCCH---HHHHHHHHCCCCEEEEC--hHhhCCCCHHHHHHHH
Confidence 4444444443322211 2211 11 1111 22345566799988885 333 23455665544
No 239
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=61.35 E-value=1.3e+02 Score=31.79 Aligned_cols=141 Identities=13% Similarity=0.128 Sum_probs=88.8
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCchhHHHH
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLA 274 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~ 274 (505)
+..-+.|+|.|-++ |.+.++...++++-++. +++++|-|--.-- --++.+-...|.+-|.||..|-.- -
T Consensus 43 ~~L~~aG~dIVRvt-v~~~e~A~A~~~Ik~~~--~vPLVaDiHf~~r-la~~~~~~g~~k~RINPGNig~~~-------~ 111 (361)
T COG0821 43 KALERAGCDIVRVT-VPDMEAAEALKEIKQRL--NVPLVADIHFDYR-LALEAAECGVDKVRINPGNIGFKD-------R 111 (361)
T ss_pred HHHHHcCCCEEEEe-cCCHHHHHHHHHHHHhC--CCCEEEEeeccHH-HHHHhhhcCcceEEECCcccCcHH-------H
Confidence 44456799987665 56666666666554433 7899998854311 112333233799999999987533 4
Q ss_pred HHHHHHHHHHcCCCe--EEehhhhHhhhcC--CCCChHHH-----HHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHH
Q 010627 275 QKVMIYKCNIQGKPV--VTATQMLESMIKS--PRPTRAEA-----TDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQ 345 (505)
Q Consensus 275 qk~Ii~~~~~~gkpv--i~ATqmLeSM~~~--~~ptraEv-----~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~ 345 (505)
-+.++++|+++|||+ ++-.-=||..... -.||+.-+ ..+.-+-..|++=+.+|--.+ .|..+|+.-+.
T Consensus 112 v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~i~iS~K~S---dv~~~v~aYr~ 188 (361)
T COG0821 112 VREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEELGFDDIKVSVKAS---DVQLMVAAYRL 188 (361)
T ss_pred HHHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcC---CHHHHHHHHHH
Confidence 478999999999997 5544444433321 15666544 223336778999999986544 56666666555
Q ss_pred HHHH
Q 010627 346 ICVE 349 (505)
Q Consensus 346 i~~~ 349 (505)
++.+
T Consensus 189 lA~~ 192 (361)
T COG0821 189 LAKR 192 (361)
T ss_pred HHHh
Confidence 5544
No 240
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=61.34 E-value=14 Score=38.59 Aligned_cols=45 Identities=11% Similarity=0.372 Sum_probs=37.9
Q ss_pred ecCCCCCCHHHHHHHHHhCC--cEEEEecCCCCHHHHHHHHHHHHHH
Q 010627 22 TLGPASRSVPMIEKLLKAGM--NVARFNFSHGSHEYHQETLNNLRTA 66 (505)
Q Consensus 22 TiGp~~~~~~~i~~li~~G~--~~~RlN~shg~~~~~~~~i~~ir~~ 66 (505)
.+|...++.+...+|+++|+ |+.=++.+||..+..+++|+.+|+.
T Consensus 91 ~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~ 137 (326)
T PRK05458 91 SVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKH 137 (326)
T ss_pred EecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhh
Confidence 44555566789999999966 9999999999999999999999873
No 241
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=61.27 E-value=75 Score=33.03 Aligned_cols=116 Identities=14% Similarity=0.160 Sum_probs=61.4
Q ss_pred CCCEEEEcC----C------CChhHHHHHHHHHh----ccCCCceEEEEecCHHHHhcHHHHHhc-----CCeeEE-ecC
Q 010627 201 QIDMIALSF----V------RKGSDLVGVRKLLG----GHAKNILLMSKVENQEGVANFDDILAN-----SDAFMV-ARG 260 (505)
Q Consensus 201 g~d~V~~sf----V------~sa~dv~~v~~~l~----~~~~~~~IiakIEt~~av~nldeI~~~-----sDgImI-aRg 260 (505)
.+|++-+.+ + +.++.+.++-+.+. +.+.++.|++|+---...+++.++++. +|+|.+ +|-
T Consensus 160 ~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~ 239 (327)
T cd04738 160 YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTT 239 (327)
T ss_pred hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 488877755 1 22344544433333 223458899999421112244444432 588875 320
Q ss_pred ----c-----ccCc---C-CchhHHHHHHHHHHHHHHc--CCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceee
Q 010627 261 ----D-----LGME---I-PIEKIFLAQKVMIYKCNIQ--GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVM 325 (505)
Q Consensus 261 ----D-----Lg~e---~-~~~~v~~~qk~Ii~~~~~~--gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~im 325 (505)
+ +... + +....+...+.+-...... ..|++.+.-+- ...|+..++..|+|++|
T Consensus 240 ~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~------------t~~da~e~l~aGAd~V~ 307 (327)
T cd04738 240 ISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGIS------------SGEDAYEKIRAGASLVQ 307 (327)
T ss_pred ccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCC------------CHHHHHHHHHcCCCHHh
Confidence 0 0000 1 1122334444444444445 57888655433 24567788889999999
Q ss_pred ecc
Q 010627 326 LSG 328 (505)
Q Consensus 326 Ls~ 328 (505)
+..
T Consensus 308 vg~ 310 (327)
T cd04738 308 LYT 310 (327)
T ss_pred ccH
Confidence 963
No 242
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=60.78 E-value=2.4e+02 Score=30.29 Aligned_cols=148 Identities=11% Similarity=0.129 Sum_probs=84.6
Q ss_pred CChhcHHHHHhcccccCCCEEEEcC----C-----------CChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHH
Q 010627 185 LTEKDKEDILKWGIPNQIDMIALSF----V-----------RKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDIL 249 (505)
Q Consensus 185 lte~D~~di~~~al~~g~d~V~~sf----V-----------~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~ 249 (505)
.++.|..++.+...+.|+|++-+.+ . ++++-+.++-+.+++. .++++++||=- -+.++.+++
T Consensus 124 ~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~-~~iPv~vKLsP--n~t~i~~ia 200 (385)
T PLN02495 124 YNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAK-ATVPVWAKMTP--NITDITQPA 200 (385)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHh-hcCceEEEeCC--ChhhHHHHH
Confidence 3667777775677778999988755 2 4556666665555443 35899999962 234466666
Q ss_pred hc-----CCeeEE-----ecCcc--cC-----------cCC-c---hhHHHHHHHHHHHHHHc------CCCeEEehhhh
Q 010627 250 AN-----SDAFMV-----ARGDL--GM-----------EIP-I---EKIFLAQKVMIYKCNIQ------GKPVVTATQML 296 (505)
Q Consensus 250 ~~-----sDgImI-----aRgDL--g~-----------e~~-~---~~v~~~qk~Ii~~~~~~------gkpvi~ATqmL 296 (505)
++ +|||.. .+-++ -. ..+ + .--|.+...+-+.+++. +.|++-.+-+.
T Consensus 201 ~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~ 280 (385)
T PLN02495 201 RVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVE 280 (385)
T ss_pred HHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCC
Confidence 53 488766 11111 10 000 1 11233334333333332 47776555433
Q ss_pred HhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCC-HHHHHHHHHHHHHHHhcc
Q 010627 297 ESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAY-PEVAVRTMAQICVEAEST 353 (505)
Q Consensus 297 eSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~y-P~~~V~~m~~i~~~aE~~ 353 (505)
-..|++.+++.|||+|.+. |+.-.+ |- .+.+|+++-+.+
T Consensus 281 ------------s~~Da~e~i~aGAs~VQv~--Ta~~~~Gp~----vi~~i~~~L~~~ 320 (385)
T PLN02495 281 ------------TGGDAAEFILLGADTVQVC--TGVMMHGYP----LVKNLCAELQDF 320 (385)
T ss_pred ------------CHHHHHHHHHhCCCceeEe--eeeeecCcH----HHHHHHHHHHHH
Confidence 3578999999999999996 444455 53 334444444443
No 243
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=60.76 E-value=1.8e+02 Score=28.93 Aligned_cols=151 Identities=19% Similarity=0.179 Sum_probs=91.6
Q ss_pred CCCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHH-----HhcHHHHHhc---CC
Q 010627 182 LPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEG-----VANFDDILAN---SD 253 (505)
Q Consensus 182 l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~a-----v~nldeI~~~---sD 253 (505)
-|..|+.|...+..-|.++++..|++. +.-+..++++|+.. ..+++..=|=-|.| +.-.+...+. +|
T Consensus 18 k~~~T~~~I~~l~~eA~~~~f~avCV~----P~~V~~A~~~l~g~-~~~~v~tVigFP~G~~~t~~K~~Ea~~ai~~GAd 92 (228)
T COG0274 18 KPDATEEDIARLCAEAKEYGFAAVCVN----PSYVPLAKEALKGS-TVVRVCTVIGFPLGANTTAVKAAEAREAIENGAD 92 (228)
T ss_pred CCCCCHHHHHHHHHHHHhhCceEEEEC----cchHHHHHHHhccC-CCeEEEEecCCCCCCChHHHHHHHHHHHHHcCCC
Confidence 366788888877788888998888776 67788889988654 23445555533332 2223333222 33
Q ss_pred e--eEEecCcccCcCCchhHHHHHHHHHHHHHHc-CCCeEEehhhhHhhhcCCCCChHHHHHHHH-HHHcCCceeeeccc
Q 010627 254 A--FMVARGDLGMEIPIEKIFLAQKVMIYKCNIQ-GKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSGE 329 (505)
Q Consensus 254 g--ImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~-gkpvi~ATqmLeSM~~~~~ptraEv~Dv~n-av~~G~D~imLs~E 329 (505)
- ++|..|-|- +=.++.+..-.+.+.++|..+ -..||+-|-.| |..|.....+ ++..|+|.|=-|.-
T Consensus 93 EiDmVinig~~k-~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~L---------t~ee~~~A~~i~~~aGAdFVKTSTG 162 (228)
T COG0274 93 EIDMVINIGALK-SGNWEAVEREIRAVVEACADAVVLKVILETGLL---------TDEEKRKACEIAIEAGADFVKTSTG 162 (228)
T ss_pred eeeeeeeHHHHh-cCCHHHHHHHHHHHHHHhCCCceEEEEEecccc---------CHHHHHHHHHHHHHhCCCEEEcCCC
Confidence 2 233333331 122345666666677777664 34468777665 4556654444 67789999866543
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 010627 330 TAAGAYPEVAVRTMAQIC 347 (505)
Q Consensus 330 ta~G~yP~~~V~~m~~i~ 347 (505)
=+-|.--+|-|+.|++++
T Consensus 163 f~~~gAT~edv~lM~~~v 180 (228)
T COG0274 163 FSAGGATVEDVKLMKETV 180 (228)
T ss_pred CCCCCCCHHHHHHHHHHh
Confidence 334445579999999987
No 244
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=60.75 E-value=18 Score=35.18 Aligned_cols=42 Identities=26% Similarity=0.316 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHH
Q 010627 28 RSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVN 69 (505)
Q Consensus 28 ~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~ 69 (505)
+-.+.|.+|.++|++.|||.+-.-+.++..++++..|++-..
T Consensus 157 ~l~~~l~~L~~~Gv~~~rI~~r~~~~~~~~~iv~~Y~~~l~~ 198 (233)
T PF01136_consen 157 CLLDELPELKDAGVDSFRIDGRTESPEYIEEIVKAYREALDN 198 (233)
T ss_pred hHHHHHHHHHHcCCCEEEEcCccCCHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999999999999999998654
No 245
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=60.68 E-value=15 Score=39.69 Aligned_cols=50 Identities=18% Similarity=0.322 Sum_probs=42.1
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHH
Q 010627 16 KTKIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRT 65 (505)
Q Consensus 16 ~tkIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~ 65 (505)
+-..-+.+|+.-++.+..+.|+++|+|+.=+..+||..+...++++++|+
T Consensus 141 ~l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~ 190 (404)
T PRK06843 141 KLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKT 190 (404)
T ss_pred CeEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHh
Confidence 34567778887667789999999999999999999998887788888876
No 246
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=60.66 E-value=55 Score=32.98 Aligned_cols=95 Identities=13% Similarity=0.133 Sum_probs=57.5
Q ss_pred HhcccccCCCEEEEcC------CCChhHHHHHHH-HHhccCCCceEEEEecC---HHHHhcHHHHHhc-CCeeEEecCcc
Q 010627 194 LKWGIPNQIDMIALSF------VRKGSDLVGVRK-LLGGHAKNILLMSKVEN---QEGVANFDDILAN-SDAFMVARGDL 262 (505)
Q Consensus 194 ~~~al~~g~d~V~~sf------V~sa~dv~~v~~-~l~~~~~~~~IiakIEt---~~av~nldeI~~~-sDgImIaRgDL 262 (505)
.++.++.|++++++.- --|.++-+++-+ ..+..+.++.|++-+-. .++++.+....+. +|++|+.+-..
T Consensus 27 i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~ 106 (284)
T cd00950 27 IEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYY 106 (284)
T ss_pred HHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEccccc
Confidence 3788999999998662 123344444433 33333456888888853 3555555554444 59999986544
Q ss_pred cCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010627 263 GMEIPIEKIFLAQKVMIYKCNIQGKPVVTA 292 (505)
Q Consensus 263 g~e~~~~~v~~~qk~Ii~~~~~~gkpvi~A 292 (505)
. ..+-+.+...-+.|.++ .+.|+++-
T Consensus 107 ~-~~~~~~l~~~~~~ia~~---~~~pi~lY 132 (284)
T cd00950 107 N-KPSQEGLYAHFKAIAEA---TDLPVILY 132 (284)
T ss_pred C-CCCHHHHHHHHHHHHhc---CCCCEEEE
Confidence 2 22335555555666554 58998864
No 247
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=60.35 E-value=1.5e+02 Score=29.29 Aligned_cols=135 Identities=13% Similarity=0.160 Sum_probs=70.6
Q ss_pred hcHHHHHhcccccCCCEEEEcC--CCChhHHHHHHHHHhccCCCceE-------EEEecCH-HHHhcHHHHHh----c-C
Q 010627 188 KDKEDILKWGIPNQIDMIALSF--VRKGSDLVGVRKLLGGHAKNILL-------MSKVENQ-EGVANFDDILA----N-S 252 (505)
Q Consensus 188 ~D~~di~~~al~~g~d~V~~sf--V~sa~dv~~v~~~l~~~~~~~~I-------iakIEt~-~av~nldeI~~----~-s 252 (505)
++.+|+ +..++.|++.+.+.- .++++-+.++.+.. +.++.+ ..|+.-- +.-.+..++++ . +
T Consensus 85 rs~edv-~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~---~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~ 160 (241)
T PRK14024 85 RDDESL-EAALATGCARVNIGTAALENPEWCARVIAEH---GDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGC 160 (241)
T ss_pred CCHHHH-HHHHHCCCCEEEECchHhCCHHHHHHHHHHh---hhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCC
Confidence 456777 777889999876643 35666666554443 333211 1111000 00112233332 2 4
Q ss_pred CeeEE-ecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCC
Q 010627 253 DAFMV-ARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETA 331 (505)
Q Consensus 253 DgImI-aRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta 331 (505)
+.+++ +|.-=|..-|+ ++..+ +++ ++..+.|+|.+..+ -+..++..+......|+|++|+..---
T Consensus 161 ~~iiv~~~~~~g~~~G~-d~~~i-~~i---~~~~~ipviasGGi---------~s~~D~~~l~~~~~~GvdgV~igra~~ 226 (241)
T PRK14024 161 SRYVVTDVTKDGTLTGP-NLELL-REV---CARTDAPVVASGGV---------SSLDDLRALAELVPLGVEGAIVGKALY 226 (241)
T ss_pred CEEEEEeecCCCCccCC-CHHHH-HHH---HhhCCCCEEEeCCC---------CCHHHHHHHhhhccCCccEEEEeHHHH
Confidence 66666 33222222232 32222 233 34568999987653 344544444433346999999987777
Q ss_pred CCCCHHHHH
Q 010627 332 AGAYPEVAV 340 (505)
Q Consensus 332 ~G~yP~~~V 340 (505)
.|.++.+-.
T Consensus 227 ~g~~~~~~~ 235 (241)
T PRK14024 227 AGAFTLPEA 235 (241)
T ss_pred cCCCCHHHH
Confidence 788877654
No 248
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=59.82 E-value=87 Score=31.79 Aligned_cols=96 Identities=15% Similarity=0.099 Sum_probs=56.8
Q ss_pred cHHHHHhc--CCeeEEecCccc--CcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHH-HHHH
Q 010627 244 NFDDILAN--SDAFMVARGDLG--MEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVA-NAVL 318 (505)
Q Consensus 244 nldeI~~~--sDgImIaRgDLg--~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~-nav~ 318 (505)
.++..++. .||+++. |--| ..+..++-..+-+..++.++ -..|+++.+ ...+..|+.+.+ .|..
T Consensus 26 ~i~~l~~~~Gv~gi~~~-GstGE~~~Lt~~Er~~~~~~~~~~~~-~~~~viagv---------~~~~~~~ai~~a~~a~~ 94 (288)
T cd00954 26 IVDYLIEKQGVDGLYVN-GSTGEGFLLSVEERKQIAEIVAEAAK-GKVTLIAHV---------GSLNLKESQELAKHAEE 94 (288)
T ss_pred HHHHHHhcCCCCEEEEC-cCCcCcccCCHHHHHHHHHHHHHHhC-CCCeEEecc---------CCCCHHHHHHHHHHHHH
Confidence 34555555 6999885 2222 23444444444444444433 235777532 123445555554 5788
Q ss_pred cCCceeeecccCCCCCCHHHHHHHHHHHHHHH
Q 010627 319 DGTDCVMLSGETAAGAYPEVAVRTMAQICVEA 350 (505)
Q Consensus 319 ~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~a 350 (505)
.|+|++|+..--....-+-+.++....|+..+
T Consensus 95 ~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~ 126 (288)
T cd00954 95 LGYDAISAITPFYYKFSFEEIKDYYREIIAAA 126 (288)
T ss_pred cCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 99999998655443334578889999998876
No 249
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=59.60 E-value=54 Score=33.66 Aligned_cols=64 Identities=8% Similarity=0.137 Sum_probs=43.1
Q ss_pred hcccccCCCEEEE------------------cCCCChhHHHHHHHHHhc-cCCCceEEEEecCH-------HHHhcHHHH
Q 010627 195 KWGIPNQIDMIAL------------------SFVRKGSDLVGVRKLLGG-HAKNILLMSKVENQ-------EGVANFDDI 248 (505)
Q Consensus 195 ~~al~~g~d~V~~------------------sfV~sa~dv~~v~~~l~~-~~~~~~IiakIEt~-------~av~nldeI 248 (505)
+...+.|+.+|.+ +.+...+.+..++..... .+.++.|+|..|.. +++++...-
T Consensus 99 ~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay 178 (285)
T TIGR02320 99 RKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAY 178 (285)
T ss_pred HHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHH
Confidence 5556789999988 334444455555555543 35678999997754 566666666
Q ss_pred Hhc-CCeeEEe
Q 010627 249 LAN-SDAFMVA 258 (505)
Q Consensus 249 ~~~-sDgImIa 258 (505)
.++ +|++|+-
T Consensus 179 ~eAGAD~ifv~ 189 (285)
T TIGR02320 179 AEAGADGIMIH 189 (285)
T ss_pred HHcCCCEEEec
Confidence 665 7999995
No 250
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=59.07 E-value=1.5e+02 Score=29.56 Aligned_cols=98 Identities=11% Similarity=0.107 Sum_probs=54.2
Q ss_pred CCCChhHHHHHHHHHhccCCCceEEEEecCH----HHHhcHHHHHhc-CCeeEEecCcccCcCCchhHHHHHHHHHHHHH
Q 010627 209 FVRKGSDLVGVRKLLGGHAKNILLMSKVENQ----EGVANFDDILAN-SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCN 283 (505)
Q Consensus 209 fV~sa~dv~~v~~~l~~~~~~~~IiakIEt~----~av~nldeI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~ 283 (505)
..++++-+.++.+.+... +++|.+||=-- ..++-...+.+. +|+|.|..+.-| -+.+.-+.++..+
T Consensus 116 Ll~dp~~l~~iv~av~~~--~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~~~~g-------~~~a~~~~I~~i~ 186 (231)
T TIGR00736 116 LLKNKELLKEFLTKMKEL--NKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDAMYPG-------KPYADMDLLKILS 186 (231)
T ss_pred hcCCHHHHHHHHHHHHcC--CCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEeeCCCC-------CchhhHHHHHHHH
Confidence 345777777777766633 57899998531 112222222222 599988422211 1223334444444
Q ss_pred Hc-C-CCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 284 IQ-G-KPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 284 ~~-g-kpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
++ + +|+|- ++..-|.. |+...+..|+|+||+.
T Consensus 187 ~~~~~ipIIg---------NGgI~s~e---da~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 187 EEFNDKIIIG---------NNSIDDIE---SAKEMLKAGADFVSVA 220 (231)
T ss_pred HhcCCCcEEE---------ECCcCCHH---HHHHHHHhCCCeEEEc
Confidence 43 3 88885 44455555 4455555699999995
No 251
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=59.05 E-value=40 Score=32.40 Aligned_cols=67 Identities=12% Similarity=0.163 Sum_probs=49.3
Q ss_pred HHHHHHHHhccCCCceEEEEecCHHH-HhcHHHHHhcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010627 216 LVGVRKLLGGHAKNILLMSKVENQEG-VANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTA 292 (505)
Q Consensus 216 v~~v~~~l~~~~~~~~IiakIEt~~a-v~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~A 292 (505)
++.+++.|.+.|.++.|.+.-|.... .++.+++++..|.|+.+-.+ +.....+-+.|+++++|++.+
T Consensus 77 a~~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~----------~~~~~~ln~~c~~~~ip~i~~ 144 (198)
T cd01485 77 AAASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEEN----------YERTAKVNDVCRKHHIPFISC 144 (198)
T ss_pred HHHHHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 45666777778888888876665532 45778888888988876332 346667889999999999875
No 252
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=58.93 E-value=58 Score=33.20 Aligned_cols=86 Identities=14% Similarity=0.212 Sum_probs=54.0
Q ss_pred cccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCchhHHHHH
Q 010627 196 WGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQ 275 (505)
Q Consensus 196 ~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~q 275 (505)
.++..|+|-. .=|+++. ...-+|.|. .+.-+-.-.-...+++.++..++--+++.||+| ||- -+.+....
T Consensus 52 sa~~~GaDL~-HiFCe~~-Aa~vIKsYs----PdLIVHP~l~~~~av~~i~k~L~RlhavVIGPG-LGR---dp~~~k~i 121 (306)
T KOG3974|consen 52 SALRVGADLS-HIFCEPE-AAVVIKSYS----PDLIVHPVLDQENAVDIIEKLLQRLHAVVIGPG-LGR---DPAILKEI 121 (306)
T ss_pred HHHHhcccee-eeeechh-HHHHHhhcC----CceeecccccCCchHhHHHHHHhheeEEEECCC-CCC---CHHHHHHH
Confidence 3455688833 2233322 222334433 333343434445588888888888899999986 544 23556667
Q ss_pred HHHHHHHHHcCCCeEE
Q 010627 276 KVMIYKCNIQGKPVVT 291 (505)
Q Consensus 276 k~Ii~~~~~~gkpvi~ 291 (505)
+.|++.|+..++|+.+
T Consensus 122 ~~iley~~~~dvP~VI 137 (306)
T KOG3974|consen 122 AKILEYLRGKDVPLVI 137 (306)
T ss_pred HHHHHHHhcCCCcEEE
Confidence 8899999999999754
No 253
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=58.74 E-value=27 Score=29.38 Aligned_cols=43 Identities=33% Similarity=0.511 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEcCC---------chHHHHHHhhCCCCcEEEE
Q 010627 375 ESLASSAVRTANSARATLILVLTRG---------GSTAKLVAKYRPGMPILSV 418 (505)
Q Consensus 375 ~~ia~~av~~a~~~~a~~Ivv~T~s---------G~ta~~ls~~RP~~pIiav 418 (505)
...+....+.+.+.++++||+-++. |+++..+.+.-| ||++.+
T Consensus 88 ~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~-~pVlvv 139 (140)
T PF00582_consen 88 GDVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAP-CPVLVV 139 (140)
T ss_dssp SSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTS-SEEEEE
T ss_pred eccchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCC-CCEEEe
Confidence 3467788888999999999999887 788899999777 999987
No 254
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=58.56 E-value=25 Score=37.40 Aligned_cols=139 Identities=22% Similarity=0.226 Sum_probs=72.4
Q ss_pred CCCCcccCCccccCCCCChhcHHHHHhcccccCCCEEEEc---CCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcH
Q 010627 169 ERKNVNLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIALS---FVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANF 245 (505)
Q Consensus 169 s~Kgvnlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~s---fV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nl 245 (505)
+..|=.+|+..+ +++ ...+ +.+..|.|.+.-| -+.|.+|+.++.+.|++.+...+|-.|+=.-..++.+
T Consensus 148 pG~GG~Lp~~KV-----~~~-ia~~--R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~ 219 (368)
T PF01645_consen 148 PGEGGHLPGEKV-----TEE-IARI--RGVPPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDI 219 (368)
T ss_dssp TTT--EE-GGG-------HH-HHHH--HTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHH
T ss_pred ccCcceechhhc-----hHH-HHHH--hCCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHH
Confidence 444566777665 433 3343 4567788877644 3678888888888888888788999998655555544
Q ss_pred HHHHh--cCCeeEEecCcccC---------cCCchhHHHHHHHHHHHHHHcC---CCeEEehhhhHhhhcCCCCChHHHH
Q 010627 246 DDILA--NSDAFMVARGDLGM---------EIPIEKIFLAQKVMIYKCNIQG---KPVVTATQMLESMIKSPRPTRAEAT 311 (505)
Q Consensus 246 deI~~--~sDgImIaRgDLg~---------e~~~~~v~~~qk~Ii~~~~~~g---kpvi~ATqmLeSM~~~~~ptraEv~ 311 (505)
...+. -+|.|.|.-++=|. +.|++ +.....++.+...+.| +..++++-=| .--.
T Consensus 220 ~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP-~~~~l~~a~~~L~~~glr~~V~Li~sGgl-----------~t~~ 287 (368)
T PF01645_consen 220 AAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLP-TEYALARAHQALVKNGLRDRVSLIASGGL-----------RTGD 287 (368)
T ss_dssp HHHHHHTT-SEEEEE-TT---SSEECCHHHHC----HHHHHHHHHHHHHCTT-CCCSEEEEESS-------------SHH
T ss_pred HHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCc-HHHHHHHHHHHHHHcCCCCceEEEEeCCc-----------cCHH
Confidence 44332 25999996444332 22221 2233344444444444 3444444333 1257
Q ss_pred HHHHHHHcCCceeeec
Q 010627 312 DVANAVLDGTDCVMLS 327 (505)
Q Consensus 312 Dv~nav~~G~D~imLs 327 (505)
|++.++..|+|++.+.
T Consensus 288 dv~kalaLGAD~v~ig 303 (368)
T PF01645_consen 288 DVAKALALGADAVYIG 303 (368)
T ss_dssp HHHHHHHCT-SEEE-S
T ss_pred HHHHHHhcCCCeeEec
Confidence 8999999999999874
No 255
>PRK14057 epimerase; Provisional
Probab=58.39 E-value=2.1e+02 Score=28.93 Aligned_cols=139 Identities=12% Similarity=0.026 Sum_probs=78.9
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCC---------CceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCc
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAK---------NILLMSKVENQEGVANFDDILANSDAFMVARGDLGME 265 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~---------~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e 265 (505)
+.-.++|+|+|.+. ++...++.+.-+.+++.|. ...|.-+-+| .++.++.++...|.|+|---+=|-.
T Consensus 92 ~~~~~aGad~It~H-~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~T--p~e~i~~~l~~vD~VLvMtV~PGfg 168 (254)
T PRK14057 92 QACVKAGAHCITLQ-AEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPAT--PLDVIIPILSDVEVIQLLAVNPGYG 168 (254)
T ss_pred HHHHHhCCCEEEEe-eccccCHHHHHHHHHHcCCCcccccccceeEEEECCCC--CHHHHHHHHHhCCEEEEEEECCCCC
Confidence 33367799988765 4665677777777777764 3567777777 5777999999999998822111110
Q ss_pred CCchhHHHHHHHHHHHH---HHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCC-C-CCHHHHH
Q 010627 266 IPIEKIFLAQKVMIYKC---NIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAA-G-AYPEVAV 340 (505)
Q Consensus 266 ~~~~~v~~~qk~Ii~~~---~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~-G-~yP~~~V 340 (505)
|..-.+..-++|.+.. .++|..+.+. +.. .=+. .-+...+..|+|.+++. +++ + ..+.+++
T Consensus 169 -GQ~Fi~~~l~KI~~lr~~~~~~~~~~~Ie-------VDG-GI~~---~ti~~l~~aGad~~V~G--SalF~~~d~~~~i 234 (254)
T PRK14057 169 -SKMRSSDLHERVAQLLCLLGDKREGKIIV-------IDG-SLTQ---DQLPSLIAQGIDRVVSG--SALFRDDRLVENT 234 (254)
T ss_pred -chhccHHHHHHHHHHHHHHHhcCCCceEE-------EEC-CCCH---HHHHHHHHCCCCEEEEC--hHhhCCCCHHHHH
Confidence 1222333333333322 2334333220 111 1111 12345667899988885 444 2 3577888
Q ss_pred HHHHHHHHHH
Q 010627 341 RTMAQICVEA 350 (505)
Q Consensus 341 ~~m~~i~~~a 350 (505)
+.++++...|
T Consensus 235 ~~l~~~~~~~ 244 (254)
T PRK14057 235 RSWRAMFKVA 244 (254)
T ss_pred HHHHHHHhhc
Confidence 8877664433
No 256
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=57.88 E-value=1.9e+02 Score=28.27 Aligned_cols=134 Identities=9% Similarity=0.080 Sum_probs=90.7
Q ss_pred cccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCc--h-hHHHH
Q 010627 198 IPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPI--E-KIFLA 274 (505)
Q Consensus 198 l~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~--~-~v~~~ 274 (505)
.++|++.+.+. ++-.++..++.+.+++.|-...+--|=+| .|+.++..++..|-++|- ++|=|+ + -++..
T Consensus 84 a~agas~~tfH-~E~~q~~~~lv~~ir~~Gmk~G~alkPgT--~Ve~~~~~~~~~D~vLvM----tVePGFGGQkFme~m 156 (224)
T KOG3111|consen 84 AKAGASLFTFH-YEATQKPAELVEKIREKGMKVGLALKPGT--PVEDLEPLAEHVDMVLVM----TVEPGFGGQKFMEDM 156 (224)
T ss_pred HhcCcceEEEE-EeeccCHHHHHHHHHHcCCeeeEEeCCCC--cHHHHHHhhccccEEEEE----EecCCCchhhhHHHH
Confidence 46799987654 45556688888899998888888888888 477788888888988773 334333 2 23333
Q ss_pred HHHHHHHHHHcCCCeE-EehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHh
Q 010627 275 QKVMIYKCNIQGKPVV-TATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAE 351 (505)
Q Consensus 275 qk~Ii~~~~~~gkpvi-~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE 351 (505)
..++-..-.++..+.| +-. .-.| +-+..+...|+++++...-.---..|-++++.|+..++.+-
T Consensus 157 m~KV~~lR~kyp~l~ievDG--------Gv~~-----~ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~v~~a~ 221 (224)
T KOG3111|consen 157 MPKVEWLREKYPNLDIEVDG--------GVGP-----STIDKAAEAGANMIVAGSAVFGAADPSDVISLLRNSVEKAA 221 (224)
T ss_pred HHHHHHHHHhCCCceEEecC--------CcCc-----chHHHHHHcCCCEEEecceeecCCCHHHHHHHHHHHHhhhh
Confidence 3444444457888887 211 1123 23466677799999886555556779999999998876653
No 257
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=57.80 E-value=1.2e+02 Score=30.47 Aligned_cols=89 Identities=18% Similarity=0.188 Sum_probs=55.4
Q ss_pred CCeeEEecCccc--CcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHH-HHHcCCceeeecc
Q 010627 252 SDAFMVARGDLG--MEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSG 328 (505)
Q Consensus 252 sDgImIaRgDLg--~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~n-av~~G~D~imLs~ 328 (505)
.||+++. |--| ..+..++-..+.+.+.+.++ -..|+++.+ ..++-.|..+.+. +-..|+|++|+..
T Consensus 32 v~gi~~~-GstGE~~~ls~~Er~~l~~~~~~~~~-~~~~vi~gv---------~~~~~~~~i~~a~~a~~~Gad~v~v~p 100 (281)
T cd00408 32 VDGLVVL-GTTGEAPTLTDEERKEVIEAVVEAVA-GRVPVIAGV---------GANSTREAIELARHAEEAGADGVLVVP 100 (281)
T ss_pred CCEEEEC-CCCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEec---------CCccHHHHHHHHHHHHHcCCCEEEECC
Confidence 6999884 3222 23444554555555555543 246777543 2445567777665 4555999999976
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHh
Q 010627 329 ETAAGAYPEVAVRTMAQICVEAE 351 (505)
Q Consensus 329 Eta~G~yP~~~V~~m~~i~~~aE 351 (505)
=.-...-+-+.++....|+.++.
T Consensus 101 P~y~~~~~~~~~~~~~~ia~~~~ 123 (281)
T cd00408 101 PYYNKPSQEGIVAHFKAVADASD 123 (281)
T ss_pred CcCCCCCHHHHHHHHHHHHhcCC
Confidence 54333446788889999887654
No 258
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=57.79 E-value=1.7e+02 Score=28.15 Aligned_cols=123 Identities=13% Similarity=0.030 Sum_probs=60.9
Q ss_pred hcHHHHHhcccccCCCEEEEcCC----------------CChhHHHHHHHHHhccCCCceEEEEecC----H-HHHhcHH
Q 010627 188 KDKEDILKWGIPNQIDMIALSFV----------------RKGSDLVGVRKLLGGHAKNILLMSKVEN----Q-EGVANFD 246 (505)
Q Consensus 188 ~D~~di~~~al~~g~d~V~~sfV----------------~sa~dv~~v~~~l~~~~~~~~IiakIEt----~-~av~nld 246 (505)
.+.....+.+.+.|+|+|=+..- +.++-+.++-+.+.+.- ...+..|+-. . +.++-+.
T Consensus 67 ~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~-~~~v~vk~r~~~~~~~~~~~~~~ 145 (231)
T cd02801 67 ETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAV-PIPVTVKIRLGWDDEEETLELAK 145 (231)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhc-CCCEEEEEeeccCCchHHHHHHH
Confidence 34444436667789999976532 35554555544444321 2567777631 1 2333333
Q ss_pred HHHhc-CCeeEEecCccc-CcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHc-CCce
Q 010627 247 DILAN-SDAFMVARGDLG-MEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLD-GTDC 323 (505)
Q Consensus 247 eI~~~-sDgImIaRgDLg-~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~-G~D~ 323 (505)
.+.+. .|.|.+..+.-. ...+...+..+ -+.++..+.|++...- .-+. .|+..++.. |+|+
T Consensus 146 ~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~----~~i~~~~~ipvi~~Gg---------i~~~---~d~~~~l~~~gad~ 209 (231)
T cd02801 146 ALEDAGASALTVHGRTREQRYSGPADWDYI----AEIKEAVSIPVIANGD---------IFSL---EDALRCLEQTGVDG 209 (231)
T ss_pred HHHHhCCCEEEECCCCHHHcCCCCCCHHHH----HHHHhCCCCeEEEeCC---------CCCH---HHHHHHHHhcCCCE
Confidence 33332 477766432110 01111122221 1222245788886443 2233 355666666 8999
Q ss_pred eeec
Q 010627 324 VMLS 327 (505)
Q Consensus 324 imLs 327 (505)
+|+.
T Consensus 210 V~ig 213 (231)
T cd02801 210 VMIG 213 (231)
T ss_pred EEEc
Confidence 9995
No 259
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=57.76 E-value=36 Score=35.52 Aligned_cols=62 Identities=18% Similarity=0.357 Sum_probs=40.7
Q ss_pred hcccccCCCEEEEcCCCChhH----------HHHHHHHHhccCCCceEEEEecCHH--HHhcHHHHHhc--CCeeEEecC
Q 010627 195 KWGIPNQIDMIALSFVRKGSD----------LVGVRKLLGGHAKNILLMSKVENQE--GVANFDDILAN--SDAFMVARG 260 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~d----------v~~v~~~l~~~~~~~~IiakIEt~~--av~nldeI~~~--sDgImIaRg 260 (505)
+.+.+.|++.+.+- .|++.+ |.++++.+ .++.||+ |-+ ..+...+.++. +||+|||||
T Consensus 159 ~~~~~~g~~~ltVH-gRtr~~~y~~~ad~~~I~~vk~~~----~~ipvi~---NGdI~s~~~a~~~l~~tg~DgVMigRg 230 (323)
T COG0042 159 RILEDAGADALTVH-GRTRAQGYLGPADWDYIKELKEAV----PSIPVIA---NGDIKSLEDAKEMLEYTGADGVMIGRG 230 (323)
T ss_pred HHHHhcCCCEEEEe-cccHHhcCCCccCHHHHHHHHHhC----CCCeEEe---CCCcCCHHHHHHHHHhhCCCEEEEcHH
Confidence 66788899998764 565543 44444433 2266766 432 44556677776 699999999
Q ss_pred cccC
Q 010627 261 DLGM 264 (505)
Q Consensus 261 DLg~ 264 (505)
=|+.
T Consensus 231 a~~n 234 (323)
T COG0042 231 ALGN 234 (323)
T ss_pred HccC
Confidence 8864
No 260
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=57.56 E-value=21 Score=37.31 Aligned_cols=49 Identities=10% Similarity=0.212 Sum_probs=42.4
Q ss_pred EEEEecCCCCCCHHHHHHHHHhC--CcEEEEecCCCCHHHHHHHHHHHHHH
Q 010627 18 KIVCTLGPASRSVPMIEKLLKAG--MNVARFNFSHGSHEYHQETLNNLRTA 66 (505)
Q Consensus 18 kIi~TiGp~~~~~~~i~~li~~G--~~~~RlN~shg~~~~~~~~i~~ir~~ 66 (505)
-..+++|-..++.+.+.+|+++| .++.=+..+||..+...+.++.+|+.
T Consensus 84 ~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~ 134 (321)
T TIGR01306 84 FASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTH 134 (321)
T ss_pred EEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHh
Confidence 46777888878889999999999 69999999999999988888888863
No 261
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=57.51 E-value=2.1e+02 Score=28.50 Aligned_cols=131 Identities=12% Similarity=0.084 Sum_probs=76.7
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCC--CceEEEEecCHHHHhcHHHHHhcCCeeEEe---cCcccCcCC--
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAK--NILLMSKVENQEGVANFDDILANSDAFMVA---RGDLGMEIP-- 267 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~--~~~IiakIEt~~av~nldeI~~~sDgImIa---RgDLg~e~~-- 267 (505)
+.-.++|+|+|.+.+ ++..++.+.-+.+++.|. +..+.-+=+| .++.++.++...|.|+|= ||==|-.+-
T Consensus 85 ~~~~~aGad~It~H~-Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~T--p~~~i~~~l~~vD~VLiMtV~PGfgGQ~f~~~ 161 (228)
T PRK08091 85 KACVAAGADIVTLQV-EQTHDLALTIEWLAKQKTTVLIGLCLCPET--PISLLEPYLDQIDLIQILTLDPRTGTKAPSDL 161 (228)
T ss_pred HHHHHhCCCEEEEcc-cCcccHHHHHHHHHHCCCCceEEEEECCCC--CHHHHHHHHhhcCEEEEEEECCCCCCccccHH
Confidence 334678999888765 666677777778888887 6777777787 578899999999999882 222222211
Q ss_pred -chhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCC-C-CCHHHHHHHHH
Q 010627 268 -IEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAA-G-AYPEVAVRTMA 344 (505)
Q Consensus 268 -~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~-G-~yP~~~V~~m~ 344 (505)
++++..+.+.+ .++|.-+.+. +.. -=+. .-+......|+|.+++. |++ | ..|.+.++.++
T Consensus 162 ~l~KI~~lr~~~----~~~~~~~~Ie-------VDG-GI~~---~ti~~l~~aGaD~~V~G--SalF~~~d~~~~i~~l~ 224 (228)
T PRK08091 162 ILDRVIQVENRL----GNRRVEKLIS-------IDG-SMTL---ELASYLKQHQIDWVVSG--SALFSQGELKTTLKEWK 224 (228)
T ss_pred HHHHHHHHHHHH----HhcCCCceEE-------EEC-CCCH---HHHHHHHHCCCCEEEEC--hhhhCCCCHHHHHHHHH
Confidence 12333333322 2334332211 111 1111 12345667899988875 344 2 24667777665
Q ss_pred H
Q 010627 345 Q 345 (505)
Q Consensus 345 ~ 345 (505)
.
T Consensus 225 ~ 225 (228)
T PRK08091 225 S 225 (228)
T ss_pred H
Confidence 4
No 262
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=57.27 E-value=51 Score=31.67 Aligned_cols=65 Identities=6% Similarity=0.026 Sum_probs=46.7
Q ss_pred HHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010627 216 LVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTA 292 (505)
Q Consensus 216 v~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~A 292 (505)
++.+++.|.+.|+++.+-+.-+... ++.++..+-.|.|+.+..+ +..+..+-+.|+++|+|.+.+
T Consensus 77 a~a~~~~L~~lNp~v~i~~~~~~~~--~~~~~~~~~~dvVi~~~~~----------~~~~~~ln~~c~~~~ip~i~~ 141 (197)
T cd01492 77 AEASLERLRALNPRVKVSVDTDDIS--EKPEEFFSQFDVVVATELS----------RAELVKINELCRKLGVKFYAT 141 (197)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCcc--ccHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 4556677777788877766555443 4567777778988877433 346677889999999999865
No 263
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=57.08 E-value=1.4e+02 Score=29.22 Aligned_cols=127 Identities=12% Similarity=0.091 Sum_probs=63.4
Q ss_pred hcHHHHHhcccccCCCEEEEcC--CCChhHHHHHHHHHhccCCCceEEEEecC-------------H--HHHhcHHHHHh
Q 010627 188 KDKEDILKWGIPNQIDMIALSF--VRKGSDLVGVRKLLGGHAKNILLMSKVEN-------------Q--EGVANFDDILA 250 (505)
Q Consensus 188 ~D~~di~~~al~~g~d~V~~sf--V~sa~dv~~v~~~l~~~~~~~~IiakIEt-------------~--~av~nldeI~~ 250 (505)
.+.+++ +.+++.|+|.|.+.- .++++-+.++.+.+ +.+ .|+.-|.. . .-++-..+..+
T Consensus 86 ~~~~~~-~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~---g~~-~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~ 160 (241)
T PRK13585 86 RSAEDA-ASLLDLGVDRVILGTAAVENPEIVRELSEEF---GSE-RVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEE 160 (241)
T ss_pred CCHHHH-HHHHHcCCCEEEEChHHhhChHHHHHHHHHh---CCC-cEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHH
Confidence 356677 777889999988764 22344445544443 222 23332221 0 11222222222
Q ss_pred c-CCeeEEe-cCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecc
Q 010627 251 N-SDAFMVA-RGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG 328 (505)
Q Consensus 251 ~-sDgImIa-RgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~ 328 (505)
. +|.+.+- +..-|..-+ ..+. .+-+.++....|++.+.-+- +.. |+......|+|++++..
T Consensus 161 ~G~~~i~~~~~~~~g~~~g-~~~~----~i~~i~~~~~iPvia~GGI~---------~~~---di~~~~~~Ga~gv~vgs 223 (241)
T PRK13585 161 LGAGSILFTNVDVEGLLEG-VNTE----PVKELVDSVDIPVIASGGVT---------TLD---DLRALKEAGAAGVVVGS 223 (241)
T ss_pred cCCCEEEEEeecCCCCcCC-CCHH----HHHHHHHhCCCCEEEeCCCC---------CHH---HHHHHHHcCCCEEEEEH
Confidence 2 4777763 211111111 1211 23334445679999876533 333 44445667999999975
Q ss_pred cCCCCCCH
Q 010627 329 ETAAGAYP 336 (505)
Q Consensus 329 Eta~G~yP 336 (505)
---.|.++
T Consensus 224 a~~~~~~~ 231 (241)
T PRK13585 224 ALYKGKFT 231 (241)
T ss_pred HHhcCCcC
Confidence 54445444
No 264
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=57.01 E-value=1.9e+02 Score=27.80 Aligned_cols=87 Identities=17% Similarity=0.221 Sum_probs=53.6
Q ss_pred CCChHHHHHHHHHHHcCCceeeecccCC---CCCCHHHHHHHHHHHHHHHhcccCchhhHHhhhhCCCCCCCchhhHHHH
Q 010627 304 RPTRAEATDVANAVLDGTDCVMLSGETA---AGAYPEVAVRTMAQICVEAESTLDYGDVFKRVMQHSPVPMSPLESLASS 380 (505)
Q Consensus 304 ~ptraEv~Dv~nav~~G~D~imLs~Eta---~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~ 380 (505)
.++..-+..+..|+.+|+|.+-+.--.. .|.| -+..+.+..+++++.. ...+-.++ . ...+ +.....
T Consensus 66 ~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~-~~~~~ei~~v~~~~~g-~~lkvI~e----~--~~l~--~~~i~~ 135 (203)
T cd00959 66 TTTEVKVAEAREAIADGADEIDMVINIGALKSGDY-EAVYEEIAAVVEACGG-APLKVILE----T--GLLT--DEEIIK 135 (203)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCH-HHHHHHHHHHHHhcCC-CeEEEEEe----c--CCCC--HHHHHH
Confidence 4566667889999999999998754332 2333 5677778887776652 11111111 1 1112 334566
Q ss_pred HHHHHHhcCCcEEEEEcCCchH
Q 010627 381 AVRTANSARATLILVLTRGGST 402 (505)
Q Consensus 381 av~~a~~~~a~~Ivv~T~sG~t 402 (505)
++++|.+++|+ ++=|.||.+
T Consensus 136 a~ria~e~GaD--~IKTsTG~~ 155 (203)
T cd00959 136 ACEIAIEAGAD--FIKTSTGFG 155 (203)
T ss_pred HHHHHHHhCCC--EEEcCCCCC
Confidence 78899999999 455556754
No 265
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=56.83 E-value=41 Score=32.39 Aligned_cols=66 Identities=17% Similarity=0.275 Sum_probs=45.6
Q ss_pred HHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010627 216 LVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTA 292 (505)
Q Consensus 216 v~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~A 292 (505)
++.+.+.+.+.+..+.+-+.-++... +|++++++-.|.|+.+-.. +..+..+-+.|+++++|++.+
T Consensus 77 a~~~~~~l~~~np~v~i~~~~~~i~~-~~~~~~~~~~D~Vi~~~d~----------~~~r~~l~~~~~~~~ip~i~~ 142 (202)
T TIGR02356 77 VEVAAQRLRELNSDIQVTALKERVTA-ENLELLINNVDLVLDCTDN----------FATRYLINDACVALGTPLISA 142 (202)
T ss_pred HHHHHHHHHHhCCCCEEEEehhcCCH-HHHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 45556666666766665554333322 5778888888988876432 246778999999999999875
No 266
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=56.77 E-value=20 Score=39.83 Aligned_cols=50 Identities=24% Similarity=0.426 Sum_probs=42.7
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHH
Q 010627 16 KTKIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRT 65 (505)
Q Consensus 16 ~tkIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~ 65 (505)
+-..=|.+|+.-+..|-.++|+++|+|+.=+..+||......+.++.||+
T Consensus 236 ~l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~ 285 (505)
T PLN02274 236 KLLVGAAIGTRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKK 285 (505)
T ss_pred CEEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHH
Confidence 34455678987788899999999999999999999998887788888886
No 267
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=56.74 E-value=1.1e+02 Score=32.82 Aligned_cols=119 Identities=18% Similarity=0.169 Sum_probs=72.9
Q ss_pred cccccCCCEEEE---cCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHh-c-CCeeEEecCcccC------
Q 010627 196 WGIPNQIDMIAL---SFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILA-N-SDAFMVARGDLGM------ 264 (505)
Q Consensus 196 ~al~~g~d~V~~---sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~-~-sDgImIaRgDLg~------ 264 (505)
+.+..|.+.+.- +...+++++.+.-+.+++.....+|+.|+=.....+.+...++ . +|+|.|.=++=|.
T Consensus 178 r~~~~g~~~isp~~~~~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~ 257 (392)
T cd02808 178 RGIPPGVDLISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLT 257 (392)
T ss_pred hCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCccc
Confidence 455567776653 3467888888887888776655788888754312333444443 3 6999995433221
Q ss_pred ---cCCchhHHHHHHHHHHHHHHc----CCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 265 ---EIPIEKIFLAQKVMIYKCNIQ----GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 265 ---e~~~~~v~~~qk~Ii~~~~~~----gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
+.+++ .......+.+++++. ..|++.+.-+- --.|++.++..|||++.+.
T Consensus 258 ~~~~~g~p-t~~~L~~v~~~~~~~~~~~~i~viasGGI~------------~g~Dv~kalaLGAd~V~ig 314 (392)
T cd02808 258 FIDHVGLP-TELGLARAHQALVKNGLRDRVSLIASGGLR------------TGADVAKALALGADAVGIG 314 (392)
T ss_pred ccccCCcc-HHHHHHHHHHHHHHcCCCCCCeEEEECCCC------------CHHHHHHHHHcCCCeeeec
Confidence 11221 223344555555544 46777665543 3469999999999999884
No 268
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=56.54 E-value=6.8 Score=28.35 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=19.5
Q ss_pred CcEEEEecC-CCCHHHHHHHHHHHH
Q 010627 41 MNVARFNFS-HGSHEYHQETLNNLR 64 (505)
Q Consensus 41 ~~~~RlN~s-hg~~~~~~~~i~~ir 64 (505)
+.+.+++|| |++.++..++++.++
T Consensus 7 a~v~~~~fSgHad~~~L~~~i~~~~ 31 (43)
T PF07521_consen 7 ARVEQIDFSGHADREELLEFIEQLN 31 (43)
T ss_dssp SEEEESGCSSS-BHHHHHHHHHHHC
T ss_pred EEEEEEeecCCCCHHHHHHHHHhcC
Confidence 678899998 999999888888774
No 269
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=56.43 E-value=97 Score=29.98 Aligned_cols=148 Identities=8% Similarity=0.087 Sum_probs=75.1
Q ss_pred cHHHHHhcccccCCCEEEEcCC-----CChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc-CCeeEEecCcc
Q 010627 189 DKEDILKWGIPNQIDMIALSFV-----RKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN-SDAFMVARGDL 262 (505)
Q Consensus 189 D~~di~~~al~~g~d~V~~sfV-----~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-sDgImIaRgDL 262 (505)
|..++.+...+.|+|.+.+.-. ....+...++++.+..+..+.+-.-|-+++-+ +++++. +|.+++++.=|
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~---~~~~~~Gad~vvigs~~l 106 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQVGGGIRSLEDI---ERLLDLGVSRVIIGTAAV 106 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHH---HHHHHcCCCEEEECchHH
Confidence 4445545666789998887632 23344555555554433334444567765544 444443 69999987544
Q ss_pred cCcCCchhHHHHHHHHHHHHHHcCC-CeEEehhhhHh-h-hcC-CCCChHHHHHHHH-HHHcCCceeeecccCCCCCCHH
Q 010627 263 GMEIPIEKIFLAQKVMIYKCNIQGK-PVVTATQMLES-M-IKS-PRPTRAEATDVAN-AVLDGTDCVMLSGETAAGAYPE 337 (505)
Q Consensus 263 g~e~~~~~v~~~qk~Ii~~~~~~gk-pvi~ATqmLeS-M-~~~-~~ptraEv~Dv~n-av~~G~D~imLs~Eta~G~yP~ 337 (505)
. + |...++ .+++.|+ +++++--+-.+ . ... ...+.-+..+.+. +...|+|.+.+.+-+..|.+.-
T Consensus 107 ~------d-p~~~~~---i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g 176 (234)
T cd04732 107 K------N-PELVKE---LLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSG 176 (234)
T ss_pred h------C-hHHHHH---HHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCC
Confidence 2 1 222333 3344566 55544211100 0 000 0011112333333 4456899999987766666533
Q ss_pred HHHHHHHHHHHH
Q 010627 338 VAVRTMAQICVE 349 (505)
Q Consensus 338 ~~V~~m~~i~~~ 349 (505)
.-.+.+.++++.
T Consensus 177 ~~~~~i~~i~~~ 188 (234)
T cd04732 177 PNFELYKELAAA 188 (234)
T ss_pred CCHHHHHHHHHh
Confidence 334555555543
No 270
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.28 E-value=31 Score=35.32 Aligned_cols=67 Identities=18% Similarity=0.177 Sum_probs=48.7
Q ss_pred cHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHH--hcHHHHHhc-CCeeEEec
Q 010627 189 DKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGV--ANFDDILAN-SDAFMVAR 259 (505)
Q Consensus 189 D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av--~nldeI~~~-sDgImIaR 259 (505)
..+++ ..++++|+|.|.+=.. ++++++++.+.+.+.+.+.. .+||---|+ +|+.++++. .|+|-+|.
T Consensus 191 ~leea-~~a~~agaDiI~LDn~-~~e~l~~~v~~l~~~~~~~~--~~leaSGGI~~~ni~~yA~tGvD~Is~ga 260 (278)
T PRK08385 191 SLEDA-LKAAKAGADIIMLDNM-TPEEIREVIEALKREGLRER--VKIEVSGGITPENIEEYAKLDVDVISLGA 260 (278)
T ss_pred CHHHH-HHHHHcCcCEEEECCC-CHHHHHHHHHHHHhcCcCCC--EEEEEECCCCHHHHHHHHHcCCCEEEeCh
Confidence 34566 7788999999999886 89999999998877652222 235543344 678888877 69998853
No 271
>PRK07695 transcriptional regulator TenI; Provisional
Probab=56.24 E-value=34 Score=32.73 Aligned_cols=36 Identities=8% Similarity=0.062 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHH
Q 010627 30 VPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRT 65 (505)
Q Consensus 30 ~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~ 65 (505)
...+.+++++|++.+-|.--|.+.++..+.++.+++
T Consensus 17 ~~~~~~~~~~g~~~iqlR~k~~~~~~~~~~~~~l~~ 52 (201)
T PRK07695 17 LVAVAMQIHSEVDYIHIREREKSAKELYEGVESLLK 52 (201)
T ss_pred HHHHHHHHhCCCCEEEEcCCCCCHHHHHHHHHHHHH
Confidence 334446899999999999999999998888888874
No 272
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=56.24 E-value=2.3e+02 Score=28.73 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=68.4
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCc
Q 010627 277 VMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDY 356 (505)
Q Consensus 277 ~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 356 (505)
.+...|+.+|.|+++- .|..+........-..|++-+....+ +.| .++.+...++.++-.. .+.
T Consensus 73 alA~~a~~~G~~~~i~-----------~p~~~~~~k~~~~~~~GA~v~~v~~~---~~~-~~~~~~a~~l~~~~~~-~~~ 136 (290)
T TIGR01138 73 ALAMIAALKGYRMKLL-----------MPDNMSQERKAAMRAYGAELILVTKE---EGM-EGARDLALELANRGEG-KLL 136 (290)
T ss_pred HHHHHHHHcCCeEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCCC---CCh-HHHHHHHHHHHHhCCC-CCC
Confidence 4556899999999764 24444344556677789998877542 122 2445555554433221 111
Q ss_pred hhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcC--CcEEEEEcCCchHHHH----HHhhCCCCcEEEE
Q 010627 357 GDVFKRVMQHSPVPMSPLESLASSAVRTANSAR--ATLILVLTRGGSTAKL----VAKYRPGMPILSV 418 (505)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--a~~Ivv~T~sG~ta~~----ls~~RP~~pIiav 418 (505)
.+ |. . +..+.--...-+.++..+++ .++||+.+-+|.|+.- +..+.|...|+++
T Consensus 137 ~~-~~-----~--~~~~~~~~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~V 196 (290)
T TIGR01138 137 DQ-FN-----N--PDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGL 196 (290)
T ss_pred Cc-cC-----C--cccHHHHhHhHHHHHHHHcCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 10 11 1 11111012334556666664 6899999999988754 4445799999999
No 273
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=56.08 E-value=44 Score=33.04 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=69.9
Q ss_pred EEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc----CCeeEEecC------------cccCcCC
Q 010627 204 MIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN----SDAFMVARG------------DLGMEIP 267 (505)
Q Consensus 204 ~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~----sDgImIaRg------------DLg~e~~ 267 (505)
.|.+=...++++...+-+.|-+.|-+ .+=.-.-|+.+++.+.++.+. .+.++||-| +.|+++=
T Consensus 17 vi~Vvr~~~~~~a~~~~~al~~gGi~-~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~Fi 95 (222)
T PRK07114 17 MVPVFYHADVEVAKKVIKACYDGGAR-VFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFI 95 (222)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCC-EEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEE
Confidence 34455567888888888877666543 222334677788888877632 345888776 2222221
Q ss_pred chhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeee
Q 010627 268 IEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 326 (505)
Q Consensus 268 ~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imL 326 (505)
--|..-..+++.|+++|.|++ |--.=.+++..|...|+|.+=|
T Consensus 96 --VsP~~~~~v~~~~~~~~i~~i--------------PG~~TpsEi~~A~~~Ga~~vKl 138 (222)
T PRK07114 96 --VTPLFNPDIAKVCNRRKVPYS--------------PGCGSLSEIGYAEELGCEIVKL 138 (222)
T ss_pred --ECCCCCHHHHHHHHHcCCCEe--------------CCCCCHHHHHHHHHCCCCEEEE
Confidence 112344789999999999987 3333446678889999999888
No 274
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=55.93 E-value=1.2e+02 Score=33.04 Aligned_cols=134 Identities=14% Similarity=0.152 Sum_probs=0.0
Q ss_pred cHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc----CCeeEEec-----
Q 010627 189 DKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN----SDAFMVAR----- 259 (505)
Q Consensus 189 D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~----sDgImIaR----- 259 (505)
|..++ |++.|+|+|-++ +.--....+|..+ +....|=. +..+.+|+.++ +|.|.+|+
T Consensus 268 D~~dl---Al~~gAdGVHLG--QeDL~~~~aR~il---g~~~iIGv------StHs~eEl~~A~~~gaDYI~lGPIFpT~ 333 (437)
T PRK12290 268 DYWQL---AIKHQAYGVHLG--QEDLEEANLAQLT---DAGIRLGL------STHGYYELLRIVQIQPSYIALGHIFPTT 333 (437)
T ss_pred CHHHH---HHHcCCCEEEcC--hHHcchhhhhhhc---CCCCEEEE------ecCCHHHHHHHhhcCCCEEEECCccCCC
Q ss_pred --CcccCcCCchhHHHHHHHH--HHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCC
Q 010627 260 --GDLGMEIPIEKIFLAQKVM--IYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAY 335 (505)
Q Consensus 260 --gDLg~e~~~~~v~~~qk~I--i~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~y 335 (505)
-+-..-+|++.+..+++.+ +..++..++|++--.-+= ..++.....-|+|++-+...-.--..
T Consensus 334 TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI~-------------~~Ni~~vl~aGa~GVAVVSAI~~A~D 400 (437)
T PRK12290 334 TKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGID-------------QSNAEQVWQCGVSSLAVVRAITLAED 400 (437)
T ss_pred CCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCcC-------------HHHHHHHHHcCCCEEEEehHhhcCCC
Q ss_pred HHHHHHHHHHHHHH
Q 010627 336 PEVAVRTMAQICVE 349 (505)
Q Consensus 336 P~~~V~~m~~i~~~ 349 (505)
|.++++.+.++...
T Consensus 401 P~aa~~~l~~~~~~ 414 (437)
T PRK12290 401 PQLVIEFFDQVMAE 414 (437)
T ss_pred HHHHHHHHHHHHhh
No 275
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=55.84 E-value=1.8e+02 Score=29.26 Aligned_cols=116 Identities=16% Similarity=0.258 Sum_probs=69.1
Q ss_pred HHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccC
Q 010627 276 KVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLD 355 (505)
Q Consensus 276 k~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~ 355 (505)
..+...|+..|.++++-. |....-.-+...-..|++.+...+ . ..++.+...++.++- .. +
T Consensus 78 ~alA~~a~~~G~~~~ivv-----------p~~~~~~k~~~l~~~Ga~vi~~~~-----~-~~~~~~~a~~la~~~-~~-~ 138 (304)
T cd01562 78 QGVAYAAKLLGIPATIVM-----------PETAPAAKVDATRAYGAEVVLYGE-----D-FDEAEAKARELAEEE-GL-T 138 (304)
T ss_pred HHHHHHHHHcCCCEEEEE-----------CCCCCHHHHHHHHHcCCEEEEeCC-----C-HHHHHHHHHHHHHhc-CC-E
Confidence 356678999999987632 222222345567778999777753 2 345666666655442 11 1
Q ss_pred chhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcC-CcEEEEEcCCchHHHHHHhh----CCCCcEEEE
Q 010627 356 YGDVFKRVMQHSPVPMSPLESLASSAVRTANSAR-ATLILVLTRGGSTAKLVAKY----RPGMPILSV 418 (505)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~-a~~Ivv~T~sG~ta~~ls~~----RP~~pIiav 418 (505)
|-..| ..+. ........+.++..+++ .+.||+.+-||.|..-++++ .|...|+++
T Consensus 139 ~~~~~-----~n~~---~~~g~~~~~~Ei~~q~~~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv 198 (304)
T cd01562 139 FIHPF-----DDPD---VIAGQGTIGLEILEQVPDLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGV 198 (304)
T ss_pred EeCCC-----CCcc---hhccHHHHHHHHHHhcCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 11111 1111 11222334566666664 69999999999987665554 788899999
No 276
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=55.65 E-value=60 Score=34.61 Aligned_cols=92 Identities=16% Similarity=0.128 Sum_probs=51.7
Q ss_pred ChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHH---hc-CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHc--
Q 010627 212 KGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDIL---AN-SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQ-- 285 (505)
Q Consensus 212 sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~---~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~-- 285 (505)
+-++++++++.. +.+|+.| ++.+.++.. +. +|+|.|+--- |-++.- .+.....+.+...+.
T Consensus 216 ~w~~i~~l~~~~-----~~PvivK-----Gv~~~eda~~a~~~Gvd~I~VS~HG-Grq~~~--~~a~~~~L~ei~~av~~ 282 (367)
T TIGR02708 216 SPRDIEEIAGYS-----GLPVYVK-----GPQCPEDADRALKAGASGIWVTNHG-GRQLDG--GPAAFDSLQEVAEAVDK 282 (367)
T ss_pred CHHHHHHHHHhc-----CCCEEEe-----CCCCHHHHHHHHHcCcCEEEECCcC-ccCCCC--CCcHHHHHHHHHHHhCC
Confidence 457888887755 4689999 344433322 22 5899984211 223211 111111122222223
Q ss_pred CCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecc
Q 010627 286 GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG 328 (505)
Q Consensus 286 gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~ 328 (505)
..|+|....+- .-.|+..++..|+|++|+..
T Consensus 283 ~i~vi~dGGIr------------~g~Dv~KaLalGAd~V~igR 313 (367)
T TIGR02708 283 RVPIVFDSGVR------------RGQHVFKALASGADLVALGR 313 (367)
T ss_pred CCcEEeeCCcC------------CHHHHHHHHHcCCCEEEEcH
Confidence 37888754433 35799999999999999953
No 277
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=55.52 E-value=45 Score=33.15 Aligned_cols=75 Identities=17% Similarity=0.192 Sum_probs=44.9
Q ss_pred cHHHHHhcccccCCCEEEEcCCCCh---hHHHHHHHHHhccCCCceEEEE--ecCHHHHhcHHHHHhc-CCeeEEecCcc
Q 010627 189 DKEDILKWGIPNQIDMIALSFVRKG---SDLVGVRKLLGGHAKNILLMSK--VENQEGVANFDDILAN-SDAFMVARGDL 262 (505)
Q Consensus 189 D~~di~~~al~~g~d~V~~sfV~sa---~dv~~v~~~l~~~~~~~~Iiak--IEt~~av~nldeI~~~-sDgImIaRgDL 262 (505)
|..++.+.+.+.|+|+|.+.--.+. .+.+.++++-... ..++||+- |.|.+ ...+.++. +|++|||||=|
T Consensus 149 ~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~-~~ipIIgNGgI~s~e---da~e~l~~GAd~VmvgR~~l 224 (231)
T TIGR00736 149 DELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEF-NDKIIIGNNSIDDIE---SAKEMLKAGADFVSVARAIL 224 (231)
T ss_pred hHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhc-CCCcEEEECCcCCHH---HHHHHHHhCCCeEEEcHhhc
Confidence 3334446678899999988532222 3566565544322 23778874 44433 23333433 89999999987
Q ss_pred cCcCC
Q 010627 263 GMEIP 267 (505)
Q Consensus 263 g~e~~ 267 (505)
.-.+.
T Consensus 225 ~~~~~ 229 (231)
T TIGR00736 225 KGNVE 229 (231)
T ss_pred cCCcC
Confidence 66544
No 278
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=55.24 E-value=1.3e+02 Score=30.81 Aligned_cols=100 Identities=15% Similarity=0.210 Sum_probs=64.1
Q ss_pred ceEEEEecCHHHHhcHHHHHhc-CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhh---HhhhcC---
Q 010627 230 ILLMSKVENQEGVANFDDILAN-SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQML---ESMIKS--- 302 (505)
Q Consensus 230 ~~IiakIEt~~av~nldeI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmL---eSM~~~--- 302 (505)
+++.-...+..-++.+.+-+.. .+-||+..-+| |.++....-+++.+.|+.+|.++-.....+ |.+...
T Consensus 75 vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l----~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~ 150 (282)
T TIGR01859 75 VPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHL----PFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEA 150 (282)
T ss_pred CeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCC----CHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCcccccccccc
Confidence 7888888765544444444443 57899875554 778888889999999999998764322221 111111
Q ss_pred CCCChHHHHHHHHHHH-cCCceeeecccCCCCCCH
Q 010627 303 PRPTRAEATDVANAVL-DGTDCVMLSGETAAGAYP 336 (505)
Q Consensus 303 ~~ptraEv~Dv~nav~-~G~D~imLs~Eta~G~yP 336 (505)
..-+ ..++..++. .|+|.+-.|-=|..|.|+
T Consensus 151 ~~t~---~eea~~f~~~tgvD~Lavs~Gt~hg~~~ 182 (282)
T TIGR01859 151 ELAD---PDEAEQFVKETGVDYLAAAIGTSHGKYK 182 (282)
T ss_pred ccCC---HHHHHHHHHHHCcCEEeeccCccccccC
Confidence 1112 233456665 799999988778887773
No 279
>PRK15005 universal stress protein F; Provisional
Probab=55.16 E-value=28 Score=30.54 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCcEEEEEcCC--------chHHHHHHhhCCCCcEEEE
Q 010627 378 ASSAVRTANSARATLILVLTRG--------GSTAKLVAKYRPGMPILSV 418 (505)
Q Consensus 378 a~~av~~a~~~~a~~Ivv~T~s--------G~ta~~ls~~RP~~pIiav 418 (505)
+...++.|.+.+++.||+-|+. |+++..+.+.-| |||+.+
T Consensus 96 ~~~I~~~a~~~~~DLIV~Gs~~~~~~~~llGS~a~~vl~~a~-cpVlvV 143 (144)
T PRK15005 96 KDRILELAKKIPADMIIIASHRPDITTYLLGSNAAAVVRHAE-CSVLVV 143 (144)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCchheeecchHHHHHHhCC-CCEEEe
Confidence 4556667889999999998774 667777877765 999986
No 280
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=54.97 E-value=2e+02 Score=29.23 Aligned_cols=118 Identities=11% Similarity=0.175 Sum_probs=69.1
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCC-HHHHHHHHHHHHHHHhcccC
Q 010627 277 VMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAY-PEVAVRTMAQICVEAESTLD 355 (505)
Q Consensus 277 ~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~y-P~~~V~~m~~i~~~aE~~~~ 355 (505)
.+...|+.+|.|+.+- .|..+....+...-..|++-+...+ .| -.++++...++.++-..+++
T Consensus 72 alA~~a~~~G~~~~i~-----------vp~~~~~~k~~~~~~~GA~v~~~~~-----~~~~~~~~~~a~~~~~~~~~~~~ 135 (299)
T TIGR01136 72 ALAMVAAAKGYKLILT-----------MPETMSLERRKLLRAYGAELILTPA-----EEGMKGAIDKAEELAAETNKYVM 135 (299)
T ss_pred HHHHHHHHcCCcEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCC-----CCChHHHHHHHHHHHhhCCCeEe
Confidence 4556889999998653 3554445556667778999877643 22 23555555554432211111
Q ss_pred chhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcC--CcEEEEEcCCchHHH----HHHhhCCCCcEEEE
Q 010627 356 YGDVFKRVMQHSPVPMSPLESLASSAVRTANSAR--ATLILVLTRGGSTAK----LVAKYRPGMPILSV 418 (505)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--a~~Ivv~T~sG~ta~----~ls~~RP~~pIiav 418 (505)
.. -|. . +..+..-....+.++..+++ .+.||+.+-+|.++- .+..++|...|+++
T Consensus 136 ~~-~~~-----~--~~~~~~g~~t~~~Ei~~ql~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~V 196 (299)
T TIGR01136 136 LD-QFE-----N--PANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAV 196 (299)
T ss_pred cC-CCC-----C--chhHHHHHHHHHHHHHHhcCCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEE
Confidence 11 010 0 11111112334556777764 799999999998874 44455799999999
No 281
>PLN02282 phosphoglycerate kinase
Probab=54.84 E-value=7.4 Score=41.83 Aligned_cols=329 Identities=17% Similarity=0.207 Sum_probs=167.8
Q ss_pred CCCCCCCCcccccCCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHH----HHHHHHHHHHHHHHHcCCeeEE
Q 010627 1 MDANCGVSTAIEKKPKTKIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHE----YHQETLNNLRTAMVNTGILCAV 76 (505)
Q Consensus 1 ~~~~~~~~~~~~~~r~tkIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~----~~~~~i~~ir~~~~~~~~~v~i 76 (505)
+|.|+|+++.-.=.-.++|-+++ ..|+.|++.|..+.= +||-..- ....+-.-.+..++.++++|..
T Consensus 24 vD~NvPi~~~g~I~dd~RI~a~l-------pTI~~l~~~gakvVl--~SHlGRP~g~~~~~SL~~va~~Ls~lL~~~V~f 94 (401)
T PLN02282 24 VDLNVPLDDNSNITDDTRIRAAV-------PTIKYLMGHGARVIL--CSHLGRPKGVTPKYSLKPLVPRLSELLGVEVVM 94 (401)
T ss_pred eecCCccCCCCcccCcHHHHHHH-------HHHHHHHHCCCeEEE--EecCCCCCCCCcccCHHHHHHHHHHHHCCCeEE
Confidence 47888885421112346666654 479999999998654 4775532 1122222233345567899988
Q ss_pred EEecCCCeeEEeecCCCCcEEecCCCEEEEEecCCCCCCccEEEecchhhhcccCCCCEEEEeCCeEEEEEEEEeeeCCe
Q 010627 77 MLDTKGPEIRTGFLKDGKPIQLKQGQEITISTDYTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGL 156 (505)
Q Consensus 77 ~~Dl~GpkiR~g~~~~~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~~~ 156 (505)
.-|.-||+.+- .+ -.|+.|+.+.|-.-.-..+.+ -|.++|.+.+..--.||++|.- -+- ....-+
T Consensus 95 v~d~~g~~~~~-~i-----~~l~~G~ilLLEN~RF~~~E~----~~~~~~a~~LA~l~DvyVNDAF---g~a--HR~haS 159 (401)
T PLN02282 95 ANDCIGEEVEK-LV-----AELPEGGVLLLENVRFYKEEE----KNDPEFAKKLASLADVYVNDAF---GTA--HRAHAS 159 (401)
T ss_pred CCCCCCHHHHH-HH-----hcCCCCCEEEEeccccCcccc----cCHHHHHHHHHHhCcEeeechh---hhh--hhcccc
Confidence 88999988761 11 135666665554321111111 1556788877776559999832 221 000001
Q ss_pred EEEEEeeCceecCCCCcccCCccccCCCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCC-ceEE--
Q 010627 157 VKCRCENSAMLGERKNVNLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKN-ILLM-- 233 (505)
Q Consensus 157 i~~~v~~gG~l~s~Kgvnlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~-~~Ii-- 233 (505)
+. -+|. -+| .. + ...-+ ..++..+.+.+..-.+. +.|+
T Consensus 160 ~~---------------gi~~---~l~---------------~~-~--aG~lm---ekEl~~L~~~l~~p~rP~vaIlGG 200 (401)
T PLN02282 160 TE---------------GVAK---YLK---------------PS-V--AGFLM---QKELDYLVGAVANPKKPFAAIVGG 200 (401)
T ss_pred hh---------------hhhh---hcC---------------cc-c--cchHH---HHHHHHHHHHhcCCCCCeEEEEcC
Confidence 00 0000 000 00 0 00111 23566666665432211 2233
Q ss_pred EEecCHHHHhcHHHHHhcCCeeEEecC-------cccCcCCc----hhHHHHHHHHHHHHHHcCCCeEEehhhhHhh-hc
Q 010627 234 SKVENQEGVANFDDILANSDAFMVARG-------DLGMEIPI----EKIFLAQKVMIYKCNIQGKPVVTATQMLESM-IK 301 (505)
Q Consensus 234 akIEt~~av~nldeI~~~sDgImIaRg-------DLg~e~~~----~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM-~~ 301 (505)
||+.+.-++ ++.++..+|.+++|-| -.|.++|. ++....-++|++.+++.|+.+++-.-..-+= ..
T Consensus 201 aKvsdKi~v--i~~Ll~kvD~lliGG~ma~tFl~A~G~~iG~sl~e~d~i~~a~~il~~a~~~g~~I~lPvD~v~~~~~~ 278 (401)
T PLN02282 201 SKVSTKIGV--IESLLEKVDILLLGGGMIFTFYKAQGYSVGSSLVEEDKLDLATSLIEKAKAKGVSLLLPTDVVIADKFA 278 (401)
T ss_pred CcHHhHHHH--HHHHHHhhhhheeccHHHHHHHHHcCCCcChhhcChhhHHHHHHHHHHHHhcCCEEeCCceEEEecccC
Confidence 688876655 8888888999999732 23455554 3444455689999999988776432211000 00
Q ss_pred CCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCchh--hHHhhhhCCCCCCCchhhHHH
Q 010627 302 SPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDYGD--VFKRVMQHSPVPMSPLESLAS 379 (505)
Q Consensus 302 ~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~--~~~~~~~~~~~~~~~~~~ia~ 379 (505)
...+ + .+.++ +.+-+ |...|. +|. ++++...+++..|...+|.-. .|+ .+.-..-+.+++.
T Consensus 279 ~~~~-~-~~~~~-~~ip~--~~~~lD----IGp---~Ti~~~~~~i~~aktI~wNGP~GvfE-----~~~F~~GT~~l~~ 341 (401)
T PLN02282 279 PDAN-S-KVVPA-SAIPD--GWMGLD----IGP---DSIKTFSEALDTTKTIIWNGPMGVFE-----FEKFAAGTEAIAK 341 (401)
T ss_pred CCCC-e-EEeeh-hcCCC--CCeeec----cCH---HHHHHHHHHHhhCCEEEEECCcCCcc-----CcchhHHHHHHHH
Confidence 0001 0 01111 11111 222222 332 788899999999998887532 232 1111123455555
Q ss_pred HHHHHHHhcCCcEEEEEcCCchHHHHHHhhCCCCcE
Q 010627 380 SAVRTANSARATLILVLTRGGSTAKLVAKYRPGMPI 415 (505)
Q Consensus 380 ~av~~a~~~~a~~Ivv~T~sG~ta~~ls~~RP~~pI 415 (505)
+...+. +.++..|+ -.|.|+..+.++--.-.+
T Consensus 342 aia~~t-~~~a~siv---GGGdt~aA~~~~g~~~~~ 373 (401)
T PLN02282 342 KLAELS-GKGVTTII---GGGDSVAAVEKVGLADKM 373 (401)
T ss_pred HHHHhh-cCCCEEEE---eCcHHHHHHHHcCCcCCc
Confidence 544422 23343222 348888888876533333
No 282
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=54.43 E-value=1.4e+02 Score=29.61 Aligned_cols=60 Identities=10% Similarity=0.129 Sum_probs=50.7
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEE
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMV 257 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImI 257 (505)
..-.++|+|+|.+- ++...++.++-+++++.|.+..+.-+=+|+ ++.++.++...|.|++
T Consensus 78 ~~fa~agad~It~H-~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp--~~~i~~~l~~vD~Vll 137 (220)
T COG0036 78 EAFAKAGADIITFH-AEATEHIHRTIQLIKELGVKAGLVLNPATP--LEALEPVLDDVDLVLL 137 (220)
T ss_pred HHHHHhCCCEEEEE-eccCcCHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhhCCEEEE
Confidence 33367899999875 467889999999999999888888888996 6779999999999988
No 283
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=54.39 E-value=15 Score=36.54 Aligned_cols=174 Identities=14% Similarity=0.225 Sum_probs=88.1
Q ss_pred eEEEEecCHHHHhcHHHHHhc-----CCeeEEecCcccCcCCchhHHHHHHHHHHHHH-HcCCCeEEehhhhHhhhcCCC
Q 010627 231 LLMSKVENQEGVANFDDILAN-----SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCN-IQGKPVVTATQMLESMIKSPR 304 (505)
Q Consensus 231 ~IiakIEt~~av~nldeI~~~-----sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~-~~gkpvi~ATqmLeSM~~~~~ 304 (505)
.=+.||.=..- ++.++|++. .|+|||| |-+|++. ....+.+++++ ..+.|++. .
T Consensus 17 ~H~tliDP~k~-~~~~ei~~~~~~~GTDaImIG-GS~gvt~------~~~~~~v~~ik~~~~lPvil------------f 76 (240)
T COG1646 17 RHLTLIDPDKT-EEADEIAEAAAEAGTDAIMIG-GSDGVTE------ENVDNVVEAIKERTDLPVIL------------F 76 (240)
T ss_pred eEEEEeCcccc-cccHHHHHHHHHcCCCEEEEC-CcccccH------HHHHHHHHHHHhhcCCCEEE------------e
Confidence 44556643222 566666654 5999998 5555432 23456677777 89999997 3
Q ss_pred CChHHHHHHHHHHHcCCceeee-----cccCC--CCCCHHHHHHHHHHHHHHH--hccc--CchhhHHhhhhCCCCCCCc
Q 010627 305 PTRAEATDVANAVLDGTDCVML-----SGETA--AGAYPEVAVRTMAQICVEA--ESTL--DYGDVFKRVMQHSPVPMSP 373 (505)
Q Consensus 305 ptraEv~Dv~nav~~G~D~imL-----s~Eta--~G~yP~~~V~~m~~i~~~a--E~~~--~~~~~~~~~~~~~~~~~~~ 373 (505)
|.-- +-+..++|+++. |.++- +| ..++..++..++..+. |.++ ....---+.....+.|.+.
T Consensus 77 P~~~------~~is~~aDavff~svLNS~n~~~i~g-aq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~ 149 (240)
T COG1646 77 PGSP------SGISPYADAVFFPSVLNSDNPYWIVG-AQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDK 149 (240)
T ss_pred cCCh------hccCccCCeEEEEEEecCCCcccccc-hhhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCc
Confidence 4332 334559999876 22221 23 3455556655555221 1111 0000000001111123333
Q ss_pred hhhHHHHHHHHHHhcCCcEEEEEcCCchH----HHHHHhhCCCCcEEEEeecccccCCCCcCCCChhhhhcccc
Q 010627 374 LESLASSAVRTANSARATLILVLTRGGST----AKLVAKYRPGMPILSVVVPEIKTDNFDWSCSNEAPARHSLI 443 (505)
Q Consensus 374 ~~~ia~~av~~a~~~~a~~Ivv~T~sG~t----a~~ls~~RP~~pIiav~~p~~~~t~~~~~~~~~~~aR~L~L 443 (505)
. -++..+..+++=++-+.+-+--.||.- ...+|+.....|.+.. . +.++...||++..
T Consensus 150 ~-~iaa~y~la~~~~g~~~~YlEagsga~~Pv~~e~v~~v~~~~~LivG-------G----GIrs~E~A~~~a~ 211 (240)
T COG1646 150 E-DIAAYYALAEKYLGMPVVYLEAGSGAGDPVPVEMVSRVLSDTPLIVG-------G----GIRSPEQAREMAE 211 (240)
T ss_pred H-HHHHHHHHHHHHhCCeEEEEEecCCCCCCcCHHHHHHhhccceEEEc-------C----CcCCHHHHHHHHH
Confidence 2 344444444445676654444444432 3456666666665554 2 2367777777765
No 284
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=54.21 E-value=49 Score=28.51 Aligned_cols=66 Identities=12% Similarity=0.065 Sum_probs=50.5
Q ss_pred CChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeE
Q 010627 211 RKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVV 290 (505)
Q Consensus 211 ~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi 290 (505)
.|.=-++.+++++.+.|-+..|.+. ++..+++.+.-.|.|+++| .+....+++-+.|...|+||.
T Consensus 12 SSs~la~km~~~a~~~gi~~~i~a~-----~~~e~~~~~~~~Dvill~P----------Qv~~~~~~i~~~~~~~~ipv~ 76 (99)
T cd05565 12 TSGLLANALNKGAKERGVPLEAAAG-----AYGSHYDMIPDYDLVILAP----------QMASYYDELKKDTDRLGIKLV 76 (99)
T ss_pred CHHHHHHHHHHHHHHCCCcEEEEEe-----eHHHHHHhccCCCEEEEcC----------hHHHHHHHHHHHhhhcCCCEE
Confidence 4445578889999888877666654 3444666666779999985 677888999999999999997
Q ss_pred E
Q 010627 291 T 291 (505)
Q Consensus 291 ~ 291 (505)
+
T Consensus 77 ~ 77 (99)
T cd05565 77 T 77 (99)
T ss_pred E
Confidence 5
No 285
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=53.92 E-value=2e+02 Score=31.06 Aligned_cols=131 Identities=14% Similarity=0.162 Sum_probs=74.1
Q ss_pred CCccccCCCCChhcHHHHHhcccccCCCEEEEcCCC-ChhHHHHHHHHHhccCCCceEEEEecCHH-HHhcHHHHHhc-C
Q 010627 176 PGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSFVR-KGSDLVGVRKLLGGHAKNILLMSKVENQE-GVANFDDILAN-S 252 (505)
Q Consensus 176 p~~~~~l~~lte~D~~di~~~al~~g~d~V~~sfV~-sa~dv~~v~~~l~~~~~~~~IiakIEt~~-av~nldeI~~~-s 252 (505)
|...+-+..++..+...+.+.+++.|+++|-..+-. +....+.++++.+..+ ...++.-+-... +-..++..++. +
T Consensus 4 ~~l~~alD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~~~~~~~i~~l~~~~~-~~~ii~D~kl~d~g~~~v~~a~~aGA 82 (430)
T PRK07028 4 PILQVALDLLELDRAVEIAKEAVAGGADWIEAGTPLIKSEGMNAIRTLRKNFP-DHTIVADMKTMDTGAIEVEMAAKAGA 82 (430)
T ss_pred ceEEEEeccCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhHHHHHHHHHHCC-CCEEEEEeeeccchHHHHHHHHHcCC
Confidence 333444555566666666577788999999663211 2444556666554432 344553322111 22255555554 6
Q ss_pred CeeEE-ecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 253 DAFMV-ARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 253 DgImI-aRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
|++.+ +-.| . .--+.+++.|+++|.++++.. | ..+|.. ..+..+...|+|.+.+.
T Consensus 83 dgV~v~g~~~--------~--~~~~~~i~~a~~~G~~~~~g~-----~---s~~t~~--e~~~~a~~~GaD~I~~~ 138 (430)
T PRK07028 83 DIVCILGLAD--------D--STIEDAVRAARKYGVRLMADL-----I---NVPDPV--KRAVELEELGVDYINVH 138 (430)
T ss_pred CEEEEecCCC--------h--HHHHHHHHHHHHcCCEEEEEe-----c---CCCCHH--HHHHHHHhcCCCEEEEE
Confidence 99886 3211 0 113678899999999988620 0 112322 33466777899999765
No 286
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=53.86 E-value=39 Score=34.55 Aligned_cols=47 Identities=17% Similarity=0.167 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCCe
Q 010627 27 SRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGIL 73 (505)
Q Consensus 27 ~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~~ 73 (505)
+.+.+.+++.+++|.+.+-+.-||-+.++..+.-+.+++....+|.+
T Consensus 84 ~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~ 130 (281)
T PRK06806 84 GMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGAT 130 (281)
T ss_pred CCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 45799999999999999999999999999999999999999988866
No 287
>PLN02417 dihydrodipicolinate synthase
Probab=53.76 E-value=77 Score=32.12 Aligned_cols=94 Identities=11% Similarity=0.139 Sum_probs=56.6
Q ss_pred HHHhcccccCCCEEEEcC------CCChhHHHHH-HHHHhccCCCceEEEEec---CHHHHhcHHHHHhc-CCeeEEecC
Q 010627 192 DILKWGIPNQIDMIALSF------VRKGSDLVGV-RKLLGGHAKNILLMSKVE---NQEGVANFDDILAN-SDAFMVARG 260 (505)
Q Consensus 192 di~~~al~~g~d~V~~sf------V~sa~dv~~v-~~~l~~~~~~~~IiakIE---t~~av~nldeI~~~-sDgImIaRg 260 (505)
.+.++.++.|+++|++.= .-|.++-.++ +...+..+.+++|++-+= +.++++....-.+. +|++|+.+-
T Consensus 26 ~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P 105 (280)
T PLN02417 26 SLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 105 (280)
T ss_pred HHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 333788999999998742 2233333333 333444456788998884 45666655554444 699999876
Q ss_pred cccCcCCchhHHHHHHHHHHHHHHcCCCeEE
Q 010627 261 DLGMEIPIEKIFLAQKVMIYKCNIQGKPVVT 291 (505)
Q Consensus 261 DLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ 291 (505)
... ..+.+.+...-+.+.++ . |+++
T Consensus 106 ~y~-~~~~~~i~~~f~~va~~----~-pi~l 130 (280)
T PLN02417 106 YYG-KTSQEGLIKHFETVLDM----G-PTII 130 (280)
T ss_pred ccC-CCCHHHHHHHHHHHHhh----C-CEEE
Confidence 653 23445555555666553 3 8765
No 288
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=53.65 E-value=35 Score=33.11 Aligned_cols=60 Identities=15% Similarity=0.078 Sum_probs=47.6
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEE
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMV 257 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImI 257 (505)
+.-.++|+|+|.+.+ ++.+++.++-+++++.|.+..|.-.-+| .++.++.++...|.|++
T Consensus 74 ~~~~~~g~~~i~~H~-E~~~~~~~~i~~ik~~g~k~GialnP~T--~~~~~~~~l~~vD~Vlv 133 (201)
T PF00834_consen 74 EEFAEAGADYITFHA-EATEDPKETIKYIKEAGIKAGIALNPET--PVEELEPYLDQVDMVLV 133 (201)
T ss_dssp HHHHHHT-SEEEEEG-GGTTTHHHHHHHHHHTTSEEEEEE-TTS---GGGGTTTGCCSSEEEE
T ss_pred HHHHhcCCCEEEEcc-cchhCHHHHHHHHHHhCCCEEEEEECCC--CchHHHHHhhhcCEEEE
Confidence 444678999887765 6778888888999998888888888888 57889999999999998
No 289
>PLN02970 serine racemase
Probab=53.53 E-value=2.3e+02 Score=29.41 Aligned_cols=115 Identities=16% Similarity=0.196 Sum_probs=68.4
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCc
Q 010627 277 VMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDY 356 (505)
Q Consensus 277 ~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 356 (505)
-+...|+.+|.|+.+- .|..+.-..+.+.-..|++.+...+ ...++.+...+++++ ...+ |
T Consensus 89 alA~~a~~~G~~~~iv-----------vp~~~~~~k~~~~~~~GA~Vi~~~~------~~~~~~~~a~~la~~-~g~~-~ 149 (328)
T PLN02970 89 ALALAAKLRGIPAYIV-----------VPKNAPACKVDAVIRYGGIITWCEP------TVESREAVAARVQQE-TGAV-L 149 (328)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHhcCCEEEEeCC------CHHHHHHHHHHHHHh-cCCE-E
Confidence 4556899999998763 2333333344566678999877642 234556666665543 1211 1
Q ss_pred hhhHHhhhhCCCCCCCchhhHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHHhh----CCCCcEEEE
Q 010627 357 GDVFKRVMQHSPVPMSPLESLASSAVRTANSA-RATLILVLTRGGSTAKLVAKY----RPGMPILSV 418 (505)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~-~a~~Ivv~T~sG~ta~~ls~~----RP~~pIiav 418 (505)
-..|. .+. ..+....-+.++..++ ..+.||+..-+|.+..-++++ .|...|+++
T Consensus 150 ~~~~~-----n~~---~~~g~~t~g~Ei~~ql~~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~V 208 (328)
T PLN02970 150 IHPYN-----DGR---VISGQGTIALEFLEQVPELDVIIVPISGGGLISGIALAAKAIKPSIKIIAA 208 (328)
T ss_pred eCCCC-----Ccc---hhhehHHHHHHHHHhccCCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEE
Confidence 11111 111 1111223355555565 469999999999998776665 899999999
No 290
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=53.45 E-value=2.4e+02 Score=28.05 Aligned_cols=37 Identities=8% Similarity=0.049 Sum_probs=27.4
Q ss_pred hcccccCCCEEEEcCC----------CChhHHHHHHHHHhccCCCce
Q 010627 195 KWGIPNQIDMIALSFV----------RKGSDLVGVRKLLGGHAKNIL 231 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV----------~sa~dv~~v~~~l~~~~~~~~ 231 (505)
+.+.+.|.|+|=++.- .+.+++.++++.+.+.|-++.
T Consensus 23 ~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 23 QLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred HHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCce
Confidence 7788999999977532 147788889998987765443
No 291
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=53.42 E-value=1e+02 Score=31.40 Aligned_cols=99 Identities=12% Similarity=0.068 Sum_probs=58.1
Q ss_pred HHHHHhcccc-cCCCEEEEcC------CCChhHHHHH-HHHHhccCCCceEEEEec---CHHHHhcHHHHHhc-CCeeEE
Q 010627 190 KEDILKWGIP-NQIDMIALSF------VRKGSDLVGV-RKLLGGHAKNILLMSKVE---NQEGVANFDDILAN-SDAFMV 257 (505)
Q Consensus 190 ~~di~~~al~-~g~d~V~~sf------V~sa~dv~~v-~~~l~~~~~~~~IiakIE---t~~av~nldeI~~~-sDgImI 257 (505)
.+.+.++.++ .|+++|++.= .=|.++-.++ +..++..+.++.||+.+- +.++++......+. +|++|+
T Consensus 26 ~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v 105 (293)
T PRK04147 26 LRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISA 105 (293)
T ss_pred HHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3334488899 9999997642 2233333333 334444456789999984 45666655555444 699999
Q ss_pred ecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010627 258 ARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTA 292 (505)
Q Consensus 258 aRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~A 292 (505)
.+...- ....+.+...-+. .|.+.+.|+++-
T Consensus 106 ~~P~y~-~~~~~~l~~~f~~---va~a~~lPv~iY 136 (293)
T PRK04147 106 VTPFYY-PFSFEEICDYYRE---IIDSADNPMIVY 136 (293)
T ss_pred eCCcCC-CCCHHHHHHHHHH---HHHhCCCCEEEE
Confidence 765432 1222344333344 455567898863
No 292
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=53.12 E-value=73 Score=32.32 Aligned_cols=98 Identities=10% Similarity=0.100 Sum_probs=57.3
Q ss_pred HHHHhcccccCCCEEEEcC-------CCChhHHHHHHHHHhccCCCceEEEEec---CHHHHhcHHHHHhc-CCeeEEec
Q 010627 191 EDILKWGIPNQIDMIALSF-------VRKGSDLVGVRKLLGGHAKNILLMSKVE---NQEGVANFDDILAN-SDAFMVAR 259 (505)
Q Consensus 191 ~di~~~al~~g~d~V~~sf-------V~sa~dv~~v~~~l~~~~~~~~IiakIE---t~~av~nldeI~~~-sDgImIaR 259 (505)
+.+.++.++.|++++++.- ....|..+-++........++.|++-+= +.++++.+....+. +|++|+.+
T Consensus 25 ~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~p 104 (292)
T PRK03170 25 RKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVT 104 (292)
T ss_pred HHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECC
Confidence 3333788999999998642 2223333333334444445678888874 44555555554443 59999976
Q ss_pred CcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010627 260 GDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTA 292 (505)
Q Consensus 260 gDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~A 292 (505)
-.+. ..+.+.+...-+.|.+ +.+.|+++-
T Consensus 105 P~~~-~~~~~~i~~~~~~ia~---~~~~pv~lY 133 (292)
T PRK03170 105 PYYN-KPTQEGLYQHFKAIAE---ATDLPIILY 133 (292)
T ss_pred CcCC-CCCHHHHHHHHHHHHh---cCCCCEEEE
Confidence 5543 2233555555555554 457898864
No 293
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=52.90 E-value=2.1e+02 Score=29.70 Aligned_cols=53 Identities=26% Similarity=0.365 Sum_probs=33.2
Q ss_pred CCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecc---cCCCCCCHHHHHHHHHHHHHHHh
Q 010627 286 GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG---ETAAGAYPEVAVRTMAQICVEAE 351 (505)
Q Consensus 286 gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~---Eta~G~yP~~~V~~m~~i~~~aE 351 (505)
..|+|.+.-+- ...|+..++..|+|+++++. ..... =+-.+.+++..+..+..
T Consensus 255 ~ipIiasGGIr------------~~~dv~kal~lGAd~V~i~~~~L~~~~~-g~~~~~~~i~~~~~el~ 310 (326)
T cd02811 255 DLPLIASGGIR------------NGLDIAKALALGADLVGMAGPFLKAALE-GEEAVIETIEQIIEELR 310 (326)
T ss_pred CCcEEEECCCC------------CHHHHHHHHHhCCCEEEEcHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 68988766544 34789999999999999974 11111 23334445555544443
No 294
>PLN02826 dihydroorotate dehydrogenase
Probab=52.78 E-value=2.4e+02 Score=30.60 Aligned_cols=88 Identities=18% Similarity=0.211 Sum_probs=50.8
Q ss_pred CCceEEEEecCHHHHhcHHHHHhc-----CCeeEEe-----c-Cccc-----CcC-Cc---hhHHHHHHHHHHHHHHc--
Q 010627 228 KNILLMSKVENQEGVANFDDILAN-----SDAFMVA-----R-GDLG-----MEI-PI---EKIFLAQKVMIYKCNIQ-- 285 (505)
Q Consensus 228 ~~~~IiakIEt~~av~nldeI~~~-----sDgImIa-----R-gDLg-----~e~-~~---~~v~~~qk~Ii~~~~~~-- 285 (505)
.+++|+.||=--..-+++++|++. +|||++. | +|+- .+. |+ .-.+...+.+-+..++.
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 358899999321222344555542 5999873 3 2231 111 11 12233444444444444
Q ss_pred CCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 286 GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 286 gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
..|+|-.+-+. ...|++..+..||+++.+.
T Consensus 341 ~ipIIgvGGI~------------sg~Da~e~i~AGAs~VQv~ 370 (409)
T PLN02826 341 KIPLVGCGGVS------------SGEDAYKKIRAGASLVQLY 370 (409)
T ss_pred CCcEEEECCCC------------CHHHHHHHHHhCCCeeeec
Confidence 46877766554 3578999999999999995
No 295
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=52.78 E-value=1.2e+02 Score=30.78 Aligned_cols=96 Identities=21% Similarity=0.198 Sum_probs=58.2
Q ss_pred HHHHhc-CCeeEEecCccc--CcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHH-HHHcCC
Q 010627 246 DDILAN-SDAFMVARGDLG--MEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGT 321 (505)
Q Consensus 246 deI~~~-sDgImIaRgDLg--~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~n-av~~G~ 321 (505)
+..++. .||+++. |--| ..+..++-..+.+..++.++ -..|+++.+ ...+-.|..+.+. |...|+
T Consensus 26 ~~l~~~Gv~Gi~~~-GstGE~~~Ls~~Er~~~~~~~~~~~~-~~~~vi~gv---------~~~s~~~~i~~a~~a~~~Ga 94 (285)
T TIGR00674 26 DFQIENGTDAIVVV-GTTGESPTLSHEEHKKVIEFVVDLVN-GRVPVIAGT---------GSNATEEAISLTKFAEDVGA 94 (285)
T ss_pred HHHHHcCCCEEEEC-ccCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEeC---------CCccHHHHHHHHHHHHHcCC
Confidence 443433 6999984 3222 34455555555555555542 236777543 1233345555444 778899
Q ss_pred ceeeecccCCCCCCHHHHHHHHHHHHHHHhc
Q 010627 322 DCVMLSGETAAGAYPEVAVRTMAQICVEAES 352 (505)
Q Consensus 322 D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~ 352 (505)
|++|+..=.-...-+-+.++....|+.+++.
T Consensus 95 d~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~ 125 (285)
T TIGR00674 95 DGFLVVTPYYNKPTQEGLYQHFKAIAEEVDL 125 (285)
T ss_pred CEEEEcCCcCCCCCHHHHHHHHHHHHhcCCC
Confidence 9999976554443467788999999887753
No 296
>PRK06381 threonine synthase; Validated
Probab=52.63 E-value=2.3e+02 Score=29.02 Aligned_cols=117 Identities=16% Similarity=0.166 Sum_probs=71.0
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCc
Q 010627 277 VMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDY 356 (505)
Q Consensus 277 ~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 356 (505)
-+...|+..|.|+++- .|.......+...-..|++-+...+ .| -++++...+.+++ +..+ +
T Consensus 77 alA~~aa~~G~~~~iv-----------vp~~~~~~~~~~l~~~GA~V~~~~~-----~~-~~~~~~a~~~~~~-~~~~-~ 137 (319)
T PRK06381 77 SIAYFARLYGLKAVIF-----------IPRSYSNSRVKEMEKYGAEIIYVDG-----KY-EEAVERSRKFAKE-NGIY-D 137 (319)
T ss_pred HHHHHHHHcCCcEEEE-----------ECCCCCHHHHHHHHHcCCEEEEcCC-----CH-HHHHHHHHHHHHH-cCcE-e
Confidence 4566899999998763 2333333445566678999888854 23 4677776666553 2211 1
Q ss_pred hhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHHhh----------CCCCcEEEE
Q 010627 357 GDVFKRVMQHSPVPMSPLESLASSAVRTANSAR--ATLILVLTRGGSTAKLVAKY----------RPGMPILSV 418 (505)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--a~~Ivv~T~sG~ta~~ls~~----------RP~~pIiav 418 (505)
... ....+....+....-+.++..+++ .+.||+.+-+|.|.--++++ .|...|+++
T Consensus 138 ~~~------~~~n~~~~~~G~~t~a~Ei~~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigV 205 (319)
T PRK06381 138 ANP------GSVNSVVDIEAYSAIAYEIYEALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGV 205 (319)
T ss_pred cCC------CCCCcchHhhhHHHHHHHHHHHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEE
Confidence 100 000010112234445566666665 68999999999997766664 587889998
No 297
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=52.59 E-value=77 Score=25.86 Aligned_cols=61 Identities=28% Similarity=0.376 Sum_probs=45.8
Q ss_pred eEEEEecCCCCCCHHHHHHH-HHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEecC-CC
Q 010627 17 TKIVCTLGPASRSVPMIEKL-LKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGILCAVMLDTK-GP 83 (505)
Q Consensus 17 tkIi~TiGp~~~~~~~i~~l-i~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~-Gp 83 (505)
-++.+=+ -.+.+-|.+.++ -..|+.++|-.-++|......++++.+++ |..++|-.|-+ ||
T Consensus 10 ~~~~~lv-S~s~DGe~ia~~~~~~G~~~iRGSs~rgg~~Alr~~~~~lk~-----G~~~~itpDGPrGP 72 (74)
T PF04028_consen 10 RKIAALV-SRSRDGELIARVLERFGFRTIRGSSSRGGARALREMLRALKE-----GYSIAITPDGPRGP 72 (74)
T ss_pred CCEEEEE-ccCcCHHHHHHHHHHcCCCeEEeCCCCcHHHHHHHHHHHHHC-----CCeEEEeCCCCCCC
Confidence 3333333 346677888774 45799999999999999998888888773 67888988876 54
No 298
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=52.22 E-value=64 Score=34.61 Aligned_cols=90 Identities=14% Similarity=0.231 Sum_probs=53.0
Q ss_pred ChhHHHHHHHHHhccCCCceEEEE-ecCHHHHhcHHHHHhc-CCeeEEe----cCcccCcC-CchhHHHHHHHHHHHHHH
Q 010627 212 KGSDLVGVRKLLGGHAKNILLMSK-VENQEGVANFDDILAN-SDAFMVA----RGDLGMEI-PIEKIFLAQKVMIYKCNI 284 (505)
Q Consensus 212 sa~dv~~v~~~l~~~~~~~~Iiak-IEt~~av~nldeI~~~-sDgImIa----RgDLg~e~-~~~~v~~~qk~Ii~~~~~ 284 (505)
+-+++..+++.. +.+++.| |-+++.. ...++. +|+|+|. |. +.... +++-++.+++. ..
T Consensus 241 tW~~i~~lr~~~-----~~pvivKgV~~~~dA---~~a~~~G~d~I~vsnhGGr~-~d~~~~t~~~L~ei~~~----~~- 306 (383)
T cd03332 241 TWEDLAFLREWT-----DLPIVLKGILHPDDA---RRAVEAGVDGVVVSNHGGRQ-VDGSIAALDALPEIVEA----VG- 306 (383)
T ss_pred CHHHHHHHHHhc-----CCCEEEecCCCHHHH---HHHHHCCCCEEEEcCCCCcC-CCCCcCHHHHHHHHHHH----hc-
Confidence 457777777744 4678888 5443322 222222 6999993 32 11111 12333333322 21
Q ss_pred cCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 285 QGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 285 ~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
-..|++++.-+- .-.||+.|+..|+|++++.
T Consensus 307 ~~~~vi~dGGIr------------~G~Dv~KALaLGA~~v~iG 337 (383)
T cd03332 307 DRLTVLFDSGVR------------TGADIMKALALGAKAVLIG 337 (383)
T ss_pred CCCeEEEeCCcC------------cHHHHHHHHHcCCCEEEEc
Confidence 248988876544 3589999999999999984
No 299
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=52.18 E-value=1.7e+02 Score=30.03 Aligned_cols=98 Identities=13% Similarity=0.233 Sum_probs=64.4
Q ss_pred ceEEEEecCHHHHhcHHHHHhc-CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeE-----E-ehhhhHhhhc-
Q 010627 230 ILLMSKVENQEGVANFDDILAN-SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVV-----T-ATQMLESMIK- 301 (505)
Q Consensus 230 ~~IiakIEt~~av~nldeI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi-----~-ATqmLeSM~~- 301 (505)
+++.-.+.+..-++.+..-++. .+-||+. |-++|+++=-..-+++++.|+++|.+|= + .++ +....
T Consensus 78 VPV~lHLDHg~~~e~i~~ai~~GftSVM~D----gS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~e--d~~~~~ 151 (285)
T PRK07709 78 VPVAIHLDHGSSFEKCKEAIDAGFTSVMID----ASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQE--DDVIAE 151 (285)
T ss_pred CcEEEECCCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCcc--CCcccc
Confidence 6788888776654444444433 4789996 3467888888888999999999999871 1 111 11101
Q ss_pred -CCCCChHHHHHHHHHHH-cCCceeeecccCCCCCCH
Q 010627 302 -SPRPTRAEATDVANAVL-DGTDCVMLSGETAAGAYP 336 (505)
Q Consensus 302 -~~~ptraEv~Dv~nav~-~G~D~imLs~Eta~G~yP 336 (505)
...-+.. +...++. -|+|++-.|--|+.|.|+
T Consensus 152 ~~~yT~pe---eA~~Fv~~TgvD~LAvaiGt~HG~Y~ 185 (285)
T PRK07709 152 GVIYADPA---ECKHLVEATGIDCLAPALGSVHGPYK 185 (285)
T ss_pred cccCCCHH---HHHHHHHHhCCCEEEEeecccccCcC
Confidence 1112223 3344553 499999999999999994
No 300
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=51.79 E-value=2.1e+02 Score=30.79 Aligned_cols=122 Identities=16% Similarity=0.192 Sum_probs=68.4
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCc
Q 010627 277 VMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDY 356 (505)
Q Consensus 277 ~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 356 (505)
-+...|+++|.++.+- .|..+.-..+...-..|++-+...+.. .-..+-..++...++.++.+..+ +
T Consensus 76 alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~v~~~~~~~-~~~~~~~~~~~a~~l~~~~~~~~-~ 142 (454)
T TIGR01137 76 GLALVAAIKGYKCIIV-----------LPEKMSNEKVDVLKALGAEIVRTPTAA-AFDSPESHIGVAKRLVREIPGAH-I 142 (454)
T ss_pred HHHHHHHHcCCeEEEE-----------eCCCcCHHHHHHHHHCCCEEEEcCCcc-CCCchHHHHHHHHHHHHhCCCcE-e
Confidence 4556899999998762 233333335556677899987764211 11122223444555544422221 1
Q ss_pred hhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 010627 357 GDVFKRVMQHSPVPMSPLESLASSAVRTANSAR--ATLILVLTRGGSTAKLVAK----YRPGMPILSV 418 (505)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--a~~Ivv~T~sG~ta~~ls~----~RP~~pIiav 418 (505)
..-|. .+..+..-....+.++..+++ .++||+..-+|.|+--+++ ++|.+.|+++
T Consensus 143 ~~~~~-------~~~~~~~~~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~v 203 (454)
T TIGR01137 143 LDQYN-------NPSNPLAHYDGTGPEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGA 203 (454)
T ss_pred cccCC-------ChhhHHHHHHhhHHHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEE
Confidence 10010 011121112334456666663 7999999999999765554 5799999999
No 301
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=51.78 E-value=2.4e+02 Score=29.88 Aligned_cols=129 Identities=12% Similarity=0.111 Sum_probs=72.1
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHh----cCCeeEEecCcccCcCCchh
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILA----NSDAFMVARGDLGMEIPIEK 270 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~----~sDgImIaRgDLg~e~~~~~ 270 (505)
+.|+..|+|+|-++.-. -.+..++.++ +.+..|-+-.-| ++++.+ -+|.|.+|+---+..=|-..
T Consensus 211 dlAl~~~aDGVHLgq~d--l~~~~aR~ll---g~~~iIG~S~Hs------~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~ 279 (347)
T PRK02615 211 DIALAVDADGVHLGQED--LPLAVARQLL---GPEKIIGRSTTN------PEEMAKAIAEGADYIGVGPVFPTPTKPGKA 279 (347)
T ss_pred HHHHHcCCCEEEeChhh--cCHHHHHHhc---CCCCEEEEecCC------HHHHHHHHHcCCCEEEECCCcCCCCCCCCC
Confidence 34677899999998522 1245666665 333334443333 444443 36999998643221111000
Q ss_pred HHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHH
Q 010627 271 IFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICV 348 (505)
Q Consensus 271 v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~ 348 (505)
+.--..+-..+.....|++.-..+ +.. ++......|+|+|.+.+.-.-...|.++++.+.....
T Consensus 280 -~~Gle~l~~~~~~~~iPv~AiGGI----------~~~---ni~~l~~~Ga~gVAvisaI~~a~dp~~~~~~l~~~l~ 343 (347)
T PRK02615 280 -PAGLEYLKYAAKEAPIPWFAIGGI----------DKS---NIPEVLQAGAKRVAVVRAIMGAEDPKQATQELLKQLS 343 (347)
T ss_pred -CCCHHHHHHHHHhCCCCEEEECCC----------CHH---HHHHHHHcCCcEEEEeHHHhCCCCHHHHHHHHHHHHh
Confidence 101122223334557898743221 222 3445556799999998877767789998888776544
No 302
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=51.71 E-value=94 Score=31.62 Aligned_cols=97 Identities=12% Similarity=0.139 Sum_probs=56.3
Q ss_pred HHHHHhcccccCCCEEEEc------CCCChhHHHHHH-HHHhccCCCceEEEEecCHHHHhcHHHHHhc-----CCeeEE
Q 010627 190 KEDILKWGIPNQIDMIALS------FVRKGSDLVGVR-KLLGGHAKNILLMSKVENQEGVANFDDILAN-----SDAFMV 257 (505)
Q Consensus 190 ~~di~~~al~~g~d~V~~s------fV~sa~dv~~v~-~~l~~~~~~~~IiakIEt~~av~nldeI~~~-----sDgImI 257 (505)
.+.+.++.++.|+++|++. +.-|.++-.++- ...+..+.++.||+-+- . +.+..-+.++. +|++|+
T Consensus 23 l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~a~~a~~~Gad~v~~ 100 (289)
T cd00951 23 YRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTATAIAYAQAAEKAGADGILL 100 (289)
T ss_pred HHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHHHHHHHHHHHHhCCCEEEE
Confidence 3333378899999999764 233444444443 34444456788898884 2 33333333332 599999
Q ss_pred ecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010627 258 ARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTA 292 (505)
Q Consensus 258 aRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~A 292 (505)
.+--.. ..+.+.+...-+.+.+ +.+.|+++-
T Consensus 101 ~pP~y~-~~~~~~i~~~f~~v~~---~~~~pi~lY 131 (289)
T cd00951 101 LPPYLT-EAPQEGLYAHVEAVCK---STDLGVIVY 131 (289)
T ss_pred CCCCCC-CCCHHHHHHHHHHHHh---cCCCCEEEE
Confidence 765432 2233455555555544 457998863
No 303
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=51.12 E-value=1.3e+02 Score=30.32 Aligned_cols=99 Identities=15% Similarity=0.119 Sum_probs=59.0
Q ss_pred cHHHHHhc-CCeeEEec-CcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHH-HHHHcC
Q 010627 244 NFDDILAN-SDAFMVAR-GDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVA-NAVLDG 320 (505)
Q Consensus 244 nldeI~~~-sDgImIaR-gDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~-nav~~G 320 (505)
+++-.++. .||++++- .-=+..+..++-..+.+.+++.++ -..|+++.+. ..+-.|.-+.+ .|...|
T Consensus 27 ~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~-~~~~vi~gv~---------~~st~~~i~~a~~a~~~G 96 (289)
T PF00701_consen 27 LIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAA-GRVPVIAGVG---------ANSTEEAIELARHAQDAG 96 (289)
T ss_dssp HHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHT-TSSEEEEEEE---------SSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHcc-CceEEEecCc---------chhHHHHHHHHHHHhhcC
Confidence 34445544 69999952 111233455555555555555442 3467776542 33444555544 477889
Q ss_pred CceeeecccCCCCCCHHHHHHHHHHHHHHHhc
Q 010627 321 TDCVMLSGETAAGAYPEVAVRTMAQICVEAES 352 (505)
Q Consensus 321 ~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~ 352 (505)
+|++|+..=--...-+-+.+++.+.|+..++.
T Consensus 97 ad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~ 128 (289)
T PF00701_consen 97 ADAVLVIPPYYFKPSQEELIDYFRAIADATDL 128 (289)
T ss_dssp -SEEEEEESTSSSCCHHHHHHHHHHHHHHSSS
T ss_pred ceEEEEeccccccchhhHHHHHHHHHHhhcCC
Confidence 99999976544555678889999999966654
No 304
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=51.11 E-value=62 Score=27.46 Aligned_cols=62 Identities=11% Similarity=0.118 Sum_probs=46.8
Q ss_pred HHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEE
Q 010627 215 DLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVT 291 (505)
Q Consensus 215 dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ 291 (505)
-+..+++++.+.|-+..+.+ -++.++++.+...|.|++++ .+...++++-+.+...|+||.+
T Consensus 19 l~~k~~~~~~~~gi~~~v~a-----~~~~~~~~~~~~~Dvill~p----------qi~~~~~~i~~~~~~~~ipv~~ 80 (95)
T TIGR00853 19 LVNKMNKAAEEYGVPVKIAA-----GSYGAAGEKLDDADVVLLAP----------QVAYMLPDLKKETDKKGIPVEV 80 (95)
T ss_pred HHHHHHHHHHHCCCcEEEEE-----ecHHHHHhhcCCCCEEEECc----------hHHHHHHHHHHHhhhcCCCEEE
Confidence 45778888888776654444 25555666666679999875 6778899999999999999875
No 305
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=51.06 E-value=1.4e+02 Score=29.51 Aligned_cols=105 Identities=12% Similarity=0.130 Sum_probs=75.6
Q ss_pred EEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCchhHHHHH--------
Q 010627 204 MIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQ-------- 275 (505)
Q Consensus 204 ~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~q-------- 275 (505)
.|.+=-..+.++...+.+.|-+.|-+ .|=--.-|+.+.+-|.++.+....++||-|-. +..+.+..+.
T Consensus 15 vI~Vlr~~~~e~a~~~a~Ali~gGi~-~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTV---L~~~q~~~a~~aGa~fiV 90 (211)
T COG0800 15 VVPVIRGDDVEEALPLAKALIEGGIP-AIEITLRTPAALEAIRALAKEFPEALIGAGTV---LNPEQARQAIAAGAQFIV 90 (211)
T ss_pred eeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEecCCCCHHHHHHHHHHhCcccEEccccc---cCHHHHHHHHHcCCCEEE
Confidence 35556678888888888877665533 34455679999999999999887888887643 3344444444
Q ss_pred -----HHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeee
Q 010627 276 -----KVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 326 (505)
Q Consensus 276 -----k~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imL 326 (505)
.++++.|+.+|.|.+ |--+-.+++..|.+.|++++=+
T Consensus 91 sP~~~~ev~~~a~~~~ip~~--------------PG~~TptEi~~Ale~G~~~lK~ 132 (211)
T COG0800 91 SPGLNPEVAKAANRYGIPYI--------------PGVATPTEIMAALELGASALKF 132 (211)
T ss_pred CCCCCHHHHHHHHhCCCccc--------------CCCCCHHHHHHHHHcChhheee
Confidence 689999999999985 3223345567888899988655
No 306
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=50.89 E-value=2.7e+02 Score=28.85 Aligned_cols=128 Identities=16% Similarity=0.223 Sum_probs=66.0
Q ss_pred CCChhcHHHHH-------hcccccCCCEEEEcC-------------CCCh----------------hHHHHHHHHHhccC
Q 010627 184 TLTEKDKEDIL-------KWGIPNQIDMIALSF-------------VRKG----------------SDLVGVRKLLGGHA 227 (505)
Q Consensus 184 ~lte~D~~di~-------~~al~~g~d~V~~sf-------------V~sa----------------~dv~~v~~~l~~~~ 227 (505)
.+|+.|.+.+. +.+.+.|+|+|=+.. .+.. +-++.+|+.+ |
T Consensus 143 ~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~v---G 219 (336)
T cd02932 143 ELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVW---P 219 (336)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHc---C
Confidence 57777776653 477889999996642 2332 3344444444 5
Q ss_pred CCceEEEEecC----------HHHHhcHHHHHhc-CCeeEEecCcccCc--CCchhHHHHHHHHHHHHHHcCCCeEEehh
Q 010627 228 KNILLMSKVEN----------QEGVANFDDILAN-SDAFMVARGDLGME--IPIEKIFLAQKVMIYKCNIQGKPVVTATQ 294 (505)
Q Consensus 228 ~~~~IiakIEt----------~~av~nldeI~~~-sDgImIaRgDLg~e--~~~~~v~~~qk~Ii~~~~~~gkpvi~ATq 294 (505)
.+..|..||=- .++++-+..+.+. .|.|=|..|..... .+..... .....-+..+....||+....
T Consensus 220 ~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~-~~~~~~~ir~~~~iPVi~~G~ 298 (336)
T cd02932 220 EDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGY-QVPFAERIRQEAGIPVIAVGL 298 (336)
T ss_pred CCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccc-cHHHHHHHHhhCCCCEEEeCC
Confidence 67778888541 1222222232222 46676665543222 1211100 011112223345899886433
Q ss_pred hhHhhhcCCCCChHHHHHHHHHHHcC-Cceeeec
Q 010627 295 MLESMIKSPRPTRAEATDVANAVLDG-TDCVMLS 327 (505)
Q Consensus 295 mLeSM~~~~~ptraEv~Dv~nav~~G-~D~imLs 327 (505)
.-|.+ |...++..| +|+|++.
T Consensus 299 ---------i~t~~---~a~~~l~~g~aD~V~~g 320 (336)
T cd02932 299 ---------ITDPE---QAEAILESGRADLVALG 320 (336)
T ss_pred ---------CCCHH---HHHHHHHcCCCCeehhh
Confidence 22333 345567777 9999884
No 307
>PRK12483 threonine dehydratase; Reviewed
Probab=50.78 E-value=1.7e+02 Score=32.68 Aligned_cols=151 Identities=17% Similarity=0.198 Sum_probs=89.1
Q ss_pred ceEEEEecCHHHHhcHHH------HHhc-----CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHh
Q 010627 230 ILLMSKVENQEGVANFDD------ILAN-----SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLES 298 (505)
Q Consensus 230 ~~IiakIEt~~av~nlde------I~~~-----sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeS 298 (505)
..|+.|.|+.+-.-.+.. |... ..||+-+ +-| ..=.-+..+|+..|.|+.+-
T Consensus 52 ~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~~~GVV~a------SaG-----Nha~gvA~aA~~lGi~~~Iv------ 114 (521)
T PRK12483 52 NQVLLKREDLQPVFSFKIRGAYNKMARLPAEQLARGVITA------SAG-----NHAQGVALAAARLGVKAVIV------ 114 (521)
T ss_pred CEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHhcCcEEEE------CCC-----HHHHHHHHHHHHhCCCEEEE------
Confidence 369999998765532221 2111 2454432 112 12235667899999998663
Q ss_pred hhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCchhhHHhhhhCCCCCCCchhhHH
Q 010627 299 MIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDYGDVFKRVMQHSPVPMSPLESLA 378 (505)
Q Consensus 299 M~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia 378 (505)
.|..+....+...-..|++-++. |....++++...+++++ +... |-.-|. . + .....-.
T Consensus 115 -----mP~~tp~~Kv~~~r~~GAeVil~------g~~~d~a~~~A~~la~e-~g~~-~v~pfd-----d--~-~viaGqg 173 (521)
T PRK12483 115 -----MPRTTPQLKVDGVRAHGGEVVLH------GESFPDALAHALKLAEE-EGLT-FVPPFD-----D--P-DVIAGQG 173 (521)
T ss_pred -----ECCCCCHHHHHHHHHCCCEEEEE------CCCHHHHHHHHHHHHHh-cCCe-eeCCCC-----C--h-HHHHHHH
Confidence 34444555667777889986654 34456777777766543 2211 111111 0 1 1112223
Q ss_pred HHHHHHHHhcC--CcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 010627 379 SSAVRTANSAR--ATLILVLTRGGSTAKLVAK----YRPGMPILSV 418 (505)
Q Consensus 379 ~~av~~a~~~~--a~~Ivv~T~sG~ta~~ls~----~RP~~pIiav 418 (505)
.-+.++.++++ .+.||+..-+|.++--+++ ++|.+.||++
T Consensus 174 Tig~EI~eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGV 219 (521)
T PRK12483 174 TVAMEILRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGV 219 (521)
T ss_pred HHHHHHHHHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEE
Confidence 33566667764 6999999999998766554 4799999999
No 308
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=50.58 E-value=2e+02 Score=29.15 Aligned_cols=119 Identities=13% Similarity=0.162 Sum_probs=66.3
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCH-HHHHHHHHHHHHHHhcccC
Q 010627 277 VMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYP-EVAVRTMAQICVEAESTLD 355 (505)
Q Consensus 277 ~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP-~~~V~~m~~i~~~aE~~~~ 355 (505)
.+...|+++|.|+.+- .|....-..+...-..|++.+..-+ .|. .++++...++.++-...+.
T Consensus 71 alA~~a~~~Gl~~~i~-----------vp~~~~~~k~~~~~~~GA~v~~~~~-----~~~~~~~~~~a~~~~~~~~~~~~ 134 (298)
T TIGR01139 71 ALAMVAAARGYKLILT-----------MPETMSIERRKLLKAYGAELVLTPG-----AEGMKGAIAKAEEIAASTPNSYF 134 (298)
T ss_pred HHHHHHHHcCCeEEEE-----------eCCccCHHHHHHHHHcCCEEEEECC-----CCCHHHHHHHHHHHHHhCCCcEE
Confidence 4556889999998763 2333322334556678999886642 342 4566655554432111110
Q ss_pred chhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcC--CcEEEEEcCCchHHHH----HHhhCCCCcEEEE
Q 010627 356 YGDVFKRVMQHSPVPMSPLESLASSAVRTANSAR--ATLILVLTRGGSTAKL----VAKYRPGMPILSV 418 (505)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--a~~Ivv~T~sG~ta~~----ls~~RP~~pIiav 418 (505)
+-.-| .. +..+..-....+.++..+++ .+.||+.+-+|.++-- +..++|...|+++
T Consensus 135 ~~~~~-----~n--~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~V 196 (298)
T TIGR01139 135 MLQQF-----EN--PANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAV 196 (298)
T ss_pred ccccc-----CC--cccHHHHHHHHHHHHHHHhCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEE
Confidence 11001 01 11111112233445555654 7999999999988654 4455799999999
No 309
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=50.38 E-value=53 Score=33.81 Aligned_cols=66 Identities=9% Similarity=0.115 Sum_probs=48.5
Q ss_pred hcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEE--ecCHHHHhcHHHHHhc-CCeeEEec
Q 010627 188 KDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSK--VENQEGVANFDDILAN-SDAFMVAR 259 (505)
Q Consensus 188 ~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~Iiak--IEt~~av~nldeI~~~-sDgImIaR 259 (505)
.+.+.+ ..+++.|+|+|.+-. -++++++++...+++.+.++.+.|- | -.+|+.+.++. .|+|-++.
T Consensus 204 ~tleea-~eA~~~GaD~I~LDn-~~~e~l~~av~~~~~~~~~i~leAsGGI----t~~ni~~ya~tGvD~Isvgs 272 (288)
T PRK07428 204 ETLEQV-QEALEYGADIIMLDN-MPVDLMQQAVQLIRQQNPRVKIEASGNI----TLETIRAVAETGVDYISSSA 272 (288)
T ss_pred CCHHHH-HHHHHcCCCEEEECC-CCHHHHHHHHHHHHhcCCCeEEEEECCC----CHHHHHHHHHcCCCEEEEch
Confidence 345566 677899999999995 6778999988887655555554442 3 14688888877 79999864
No 310
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=50.32 E-value=63 Score=30.38 Aligned_cols=67 Identities=13% Similarity=0.139 Sum_probs=46.9
Q ss_pred HHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHc-CCCeEEeh
Q 010627 216 LVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQ-GKPVVTAT 293 (505)
Q Consensus 216 v~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~-gkpvi~AT 293 (505)
++.+++.+.+.+..+.+.+--+.... +|++++++-.|.|+.+-.+ +..+..+...|.++ ++|.+.+.
T Consensus 54 a~~~~~~l~~lnp~v~i~~~~~~~~~-~~~~~~l~~~DlVi~~~d~----------~~~r~~i~~~~~~~~~ip~i~~~ 121 (174)
T cd01487 54 VEALKENLREINPFVKIEAINIKIDE-NNLEGLFGDCDIVVEAFDN----------AETKAMLAESLLGNKNKPVVCAS 121 (174)
T ss_pred HHHHHHHHHHHCCCCEEEEEEeecCh-hhHHHHhcCCCEEEECCCC----------HHHHHHHHHHHHHHCCCCEEEEe
Confidence 66667777777877777665444433 6788888888888876333 24566777777776 99999863
No 311
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=50.11 E-value=78 Score=27.57 Aligned_cols=62 Identities=15% Similarity=0.257 Sum_probs=49.7
Q ss_pred HHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEE
Q 010627 215 DLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVT 291 (505)
Q Consensus 215 dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ 291 (505)
=+...+++....|.+..|.|.=|+. +++-+...|.+++|| .+...-+++-+.+...|+||-+
T Consensus 17 LV~Km~~aA~~kg~~~~I~A~s~~e-----~~~~~~~~DvvLlGP----------Qv~y~~~~~~~~~~~~giPV~v 78 (102)
T COG1440 17 LVTKMKKAAESKGKDVTIEAYSETE-----LSEYIDNADVVLLGP----------QVRYMLKQLKEAAEEKGIPVEV 78 (102)
T ss_pred HHHHHHHHHHhCCCceEEEEechhH-----HHHhhhcCCEEEECh----------HHHHHHHHHHHHhcccCCCeEE
Confidence 4667777888888899999876663 444455789999996 6778889999999999999865
No 312
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.93 E-value=56 Score=33.32 Aligned_cols=65 Identities=14% Similarity=0.186 Sum_probs=45.6
Q ss_pred cHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEE--ecCHHHHhcHHHHHhc-CCeeEEec
Q 010627 189 DKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSK--VENQEGVANFDDILAN-SDAFMVAR 259 (505)
Q Consensus 189 D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~Iiak--IEt~~av~nldeI~~~-sDgImIaR 259 (505)
..+.. +.++++|+|+|.+-.. ++++++++.+++.....++.+.|- | | .+|+.++++. +|+|.+|.
T Consensus 191 tleea-~~A~~~GaDiI~LDn~-~~e~l~~~v~~~~~~~~~~~ieAsGgI-t---~~ni~~ya~~GvD~IsvG~ 258 (273)
T PRK05848 191 SLEEA-KNAMNAGADIVMCDNM-SVEEIKEVVAYRNANYPHVLLEASGNI-T---LENINAYAKSGVDAISSGS 258 (273)
T ss_pred CHHHH-HHHHHcCCCEEEECCC-CHHHHHHHHHHhhccCCCeEEEEECCC-C---HHHHHHHHHcCCCEEEeCh
Confidence 34566 6778999999999774 888888888876543445544442 3 2 3577777776 79999864
No 313
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=49.89 E-value=93 Score=31.97 Aligned_cols=111 Identities=14% Similarity=0.236 Sum_probs=65.7
Q ss_pred CceEEEEecCHHHHhcHHHHHhc-CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCe-EEehhhh---Hhhhc--
Q 010627 229 NILLMSKVENQEGVANFDDILAN-SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPV-VTATQML---ESMIK-- 301 (505)
Q Consensus 229 ~~~IiakIEt~~av~nldeI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpv-i~ATqmL---eSM~~-- 301 (505)
++++.-.+.+..-++.+.+-++. .+.||+. |-.+|+++=-..-+++++.|+.+|.+| .=-.++- +....
T Consensus 74 ~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~D----gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~ 149 (283)
T PRK07998 74 DVPVSLHLDHGKTFEDVKQAVRAGFTSVMID----GAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEA 149 (283)
T ss_pred CCCEEEECcCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccc
Confidence 45666666655433333332322 4799994 235788777777899999999999998 1111110 11101
Q ss_pred CCCCChHHHHHHHHHH-HcCCceeeecccCCCCCCH--HHHHHHHHHH
Q 010627 302 SPRPTRAEATDVANAV-LDGTDCVMLSGETAAGAYP--EVAVRTMAQI 346 (505)
Q Consensus 302 ~~~ptraEv~Dv~nav-~~G~D~imLs~Eta~G~yP--~~~V~~m~~i 346 (505)
...-+..|+ ..++ .-|+|++-.+--|+.|.|+ ---.+.+.+|
T Consensus 150 ~~~T~pe~a---~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I 194 (283)
T PRK07998 150 DCKTEPEKV---KDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRI 194 (283)
T ss_pred cccCCHHHH---HHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHH
Confidence 111223333 4444 3599999999999999994 3223444444
No 314
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=49.79 E-value=3.3e+02 Score=29.82 Aligned_cols=185 Identities=19% Similarity=0.140 Sum_probs=105.9
Q ss_pred CCChhcHHHHHhcccccCCCEEEE----------cCCCChhHHHHHHHHHhccCCCceE--EEEecCHHHHhc-------
Q 010627 184 TLTEKDKEDILKWGIPNQIDMIAL----------SFVRKGSDLVGVRKLLGGHAKNILL--MSKVENQEGVAN------- 244 (505)
Q Consensus 184 ~lte~D~~di~~~al~~g~d~V~~----------sfV~sa~dv~~v~~~l~~~~~~~~I--iakIEt~~av~n------- 244 (505)
.++..|+..|.....+.|++.|=+ +|+. .++.+.++.+- +...++.+ ++.--|..|..+
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~-e~p~e~l~~l~-~~~~~~~l~~l~r~~N~~G~~~~pddvv~ 99 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLN-EDPWERLRKIR-KAVKKTKLQMLLRGQNLLGYRNYADDVVE 99 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCC-CCHHHHHHHHH-HhCCCCEEEEEeccccccccccCchhhHH
Confidence 567778777755556678887755 4544 22344444432 22233443 355445555543
Q ss_pred --HHHHHhc-CCeeEE--ecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHH-HHH
Q 010627 245 --FDDILAN-SDAFMV--ARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVL 318 (505)
Q Consensus 245 --ldeI~~~-sDgImI--aRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~n-av~ 318 (505)
++.-++. .|.+-| +-.|+ .. .+..++.++++|+.+-++- +....|+-+.+-+.+++. +..
T Consensus 100 ~~v~~A~~~Gvd~irif~~lnd~---------~n-~~~~v~~ak~~G~~v~~~i----~~t~~p~~~~~~~~~~a~~l~~ 165 (448)
T PRK12331 100 SFVQKSVENGIDIIRIFDALNDV---------RN-LETAVKATKKAGGHAQVAI----SYTTSPVHTIDYFVKLAKEMQE 165 (448)
T ss_pred HHHHHHHHCCCCEEEEEEecCcH---------HH-HHHHHHHHHHcCCeEEEEE----EeecCCCCCHHHHHHHHHHHHH
Confidence 1222222 364433 33333 22 4557899999998754321 233346666666777665 667
Q ss_pred cCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCchhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcCCcEEEEEcC
Q 010627 319 DGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDYGDVFKRVMQHSPVPMSPLESLASSAVRTANSARATLILVLTR 398 (505)
Q Consensus 319 ~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~ 398 (505)
.|+|.|.+ .+|+=--.|.++-+.+..+.++..--+.. |.+ + ..-+|.+....|.+.+|+ +|=-|-
T Consensus 166 ~Gad~I~i-~Dt~G~l~P~~v~~lv~alk~~~~~pi~~--H~H----------n-t~GlA~AN~laAieaGad-~vD~sv 230 (448)
T PRK12331 166 MGADSICI-KDMAGILTPYVAYELVKRIKEAVTVPLEV--HTH----------A-TSGIAEMTYLKAIEAGAD-IIDTAI 230 (448)
T ss_pred cCCCEEEE-cCCCCCCCHHHHHHHHHHHHHhcCCeEEE--Eec----------C-CCCcHHHHHHHHHHcCCC-EEEeec
Confidence 79999999 58888888999988888876544311111 111 1 123466666677788888 343333
Q ss_pred C
Q 010627 399 G 399 (505)
Q Consensus 399 s 399 (505)
+
T Consensus 231 ~ 231 (448)
T PRK12331 231 S 231 (448)
T ss_pred c
Confidence 3
No 315
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=49.48 E-value=1.9e+02 Score=28.06 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=22.7
Q ss_pred HHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHH-HHHcCCceeeec
Q 010627 281 KCNIQGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLS 327 (505)
Q Consensus 281 ~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~n-av~~G~D~imLs 327 (505)
.++..+.|++.+..+ -+.. |+.. .-..|+|+++++
T Consensus 192 i~~~~~ipvia~GGi---------~s~~---di~~~l~~~gadgV~vg 227 (232)
T TIGR03572 192 VSDAVSIPVIALGGA---------GSLD---DLVEVALEAGASAVAAA 227 (232)
T ss_pred HHhhCCCCEEEECCC---------CCHH---HHHHHHHHcCCCEEEEe
Confidence 344458999987654 2334 4444 344699999986
No 316
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=49.41 E-value=30 Score=37.33 Aligned_cols=46 Identities=20% Similarity=0.431 Sum_probs=42.1
Q ss_pred EecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHH
Q 010627 21 CTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTA 66 (505)
Q Consensus 21 ~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~ 66 (505)
|.||-.-++.+-+.-|.++|+|+.=|.-|.|+..+..++|+.+|+.
T Consensus 244 AaiGTre~dK~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~ 289 (503)
T KOG2550|consen 244 AAIGTRDDDKERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKET 289 (503)
T ss_pred eccccccchhHHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhh
Confidence 5678778889999999999999999999999999999999999973
No 317
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=49.37 E-value=2.4e+02 Score=30.30 Aligned_cols=89 Identities=16% Similarity=0.156 Sum_probs=53.3
Q ss_pred ceEEEEe---cCHHHHhcHHHHHhc--CCeeEEec--------CcccCcCCchhHHHHHHHHHHHHHHc-CCCeEEehhh
Q 010627 230 ILLMSKV---ENQEGVANFDDILAN--SDAFMVAR--------GDLGMEIPIEKIFLAQKVMIYKCNIQ-GKPVVTATQM 295 (505)
Q Consensus 230 ~~IiakI---Et~~av~nldeI~~~--sDgImIaR--------gDLg~e~~~~~v~~~qk~Ii~~~~~~-gkpvi~ATqm 295 (505)
+.+|+-| .+++....+-+.++. +|++=+.= .++|..++ .-+..-+++++.++++ .+|+++=
T Consensus 114 ~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~g--q~~e~~~~i~~~Vk~~~~iPv~vK--- 188 (385)
T PLN02495 114 RILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVG--QDCDLLEEVCGWINAKATVPVWAK--- 188 (385)
T ss_pred CcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhc--cCHHHHHHHHHHHHHhhcCceEEE---
Confidence 4555555 344444444333332 46665511 12343333 3367777888888764 7999862
Q ss_pred hHhhhcCCCCChHHHHHHHH-HHHcCCceeeecccC
Q 010627 296 LESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSGET 330 (505)
Q Consensus 296 LeSM~~~~~ptraEv~Dv~n-av~~G~D~imLs~Et 330 (505)
-.|.-.++.+++. +...|+||+.+.+=+
T Consensus 189 -------LsPn~t~i~~ia~aa~~~Gadgi~liNT~ 217 (385)
T PLN02495 189 -------MTPNITDITQPARVALKSGCEGVAAINTI 217 (385)
T ss_pred -------eCCChhhHHHHHHHHHHhCCCEEEEeccc
Confidence 2355556888888 667899999997644
No 318
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=49.33 E-value=1.4e+02 Score=30.11 Aligned_cols=97 Identities=19% Similarity=0.205 Sum_probs=58.8
Q ss_pred HHHHHhc-CCeeEEecCccc--CcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHH-HHHHHHcC
Q 010627 245 FDDILAN-SDAFMVARGDLG--MEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATD-VANAVLDG 320 (505)
Q Consensus 245 ldeI~~~-sDgImIaRgDLg--~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~D-v~nav~~G 320 (505)
++-.++. .||+++. |--| ..+..++-..+.+...+.+. ...|+++.+. .++-.|..+ ...|...|
T Consensus 27 i~~l~~~Gv~gl~v~-GstGE~~~lt~~Er~~l~~~~~~~~~-~~~~vi~gv~---------~~~~~~~~~~a~~a~~~G 95 (284)
T cd00950 27 IEFQIENGTDGLVVC-GTTGESPTLSDEEHEAVIEAVVEAVN-GRVPVIAGTG---------SNNTAEAIELTKRAEKAG 95 (284)
T ss_pred HHHHHHcCCCEEEEC-CCCcchhhCCHHHHHHHHHHHHHHhC-CCCcEEeccC---------CccHHHHHHHHHHHHHcC
Confidence 3444433 6999986 3332 33445555555555555542 2457665321 223334433 44578889
Q ss_pred CceeeecccCCCCCCHHHHHHHHHHHHHHHhc
Q 010627 321 TDCVMLSGETAAGAYPEVAVRTMAQICVEAES 352 (505)
Q Consensus 321 ~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~ 352 (505)
+|++|+..-.-...-+-+.++..+.|+.++..
T Consensus 96 ~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~ 127 (284)
T cd00950 96 ADAALVVTPYYNKPSQEGLYAHFKAIAEATDL 127 (284)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHhcCCC
Confidence 99999987665555578889999999887653
No 319
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=49.26 E-value=2.2e+02 Score=28.95 Aligned_cols=102 Identities=14% Similarity=0.085 Sum_probs=60.3
Q ss_pred HHHhc-HHHHHh--cCCeeEEecCcc--cCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHH-
Q 010627 240 EGVAN-FDDILA--NSDAFMVARGDL--GMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDV- 313 (505)
Q Consensus 240 ~av~n-ldeI~~--~sDgImIaRgDL--g~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv- 313 (505)
+++++ ++..++ -.|||+++ |-- +..+..++-..+.+..++.++ -..|++..+ ..++-.|..+.
T Consensus 24 ~~~~~li~~l~~~~Gv~gi~v~-GstGE~~~Ls~eEr~~~~~~~~~~~~-~~~~viagv---------g~~~t~~ai~~a 92 (293)
T PRK04147 24 QGLRRLVRFNIEKQGIDGLYVG-GSTGEAFLLSTEEKKQVLEIVAEEAK-GKVKLIAQV---------GSVNTAEAQELA 92 (293)
T ss_pred HHHHHHHHHHHhcCCCCEEEEC-CCccccccCCHHHHHHHHHHHHHHhC-CCCCEEecC---------CCCCHHHHHHHH
Confidence 34433 344444 36999985 322 223555665566666666654 236777543 13444555544
Q ss_pred HHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhc
Q 010627 314 ANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAES 352 (505)
Q Consensus 314 ~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~ 352 (505)
..|...|+|++|+..=--...-+-+.++....++.++.-
T Consensus 93 ~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~l 131 (293)
T PRK04147 93 KYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADN 131 (293)
T ss_pred HHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCC
Confidence 457789999999975433333346778888888877653
No 320
>PRK08638 threonine dehydratase; Validated
Probab=49.23 E-value=2.1e+02 Score=29.88 Aligned_cols=116 Identities=16% Similarity=0.233 Sum_probs=69.6
Q ss_pred HHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccC
Q 010627 276 KVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLD 355 (505)
Q Consensus 276 k~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~ 355 (505)
.-+...|+..|.|+.+- .|..+--..+...-..|++-++.. ....++++.+.+++++- ..+
T Consensus 88 ~alA~~aa~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~V~~~~------~~~~~~~~~a~~~a~~~-g~~- 148 (333)
T PRK08638 88 QGVALSCALLGIDGKVV-----------MPKGAPKSKVAATCGYGAEVVLHG------DNFNDTIAKVEEIVEEE-GRT- 148 (333)
T ss_pred HHHHHHHHHcCCCEEEE-----------eCCCCcHHHHHHHHHcCCEEEEEC------cCHHHHHHHHHHHHHhc-CCE-
Confidence 34566899999999763 233333334455567899887652 23457777777776542 221
Q ss_pred chhhHHhhhhCCCCCCCchhhHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHHhh----CCCCcEEEE
Q 010627 356 YGDVFKRVMQHSPVPMSPLESLASSAVRTANSA-RATLILVLTRGGSTAKLVAKY----RPGMPILSV 418 (505)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~-~a~~Ivv~T~sG~ta~~ls~~----RP~~pIiav 418 (505)
|-.-|. .+....-...++ .++.+++ +.+.||+..-+|.+..-++++ .|...|+++
T Consensus 149 ~~~~~~-----~~~~~~g~~t~a---~Ei~~q~~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigV 208 (333)
T PRK08638 149 FIPPYD-----DPKVIAGQGTIG---LEILEDLWDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGV 208 (333)
T ss_pred EcCcCC-----CcchhccccHHH---HHHHhhcCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 111111 111111122333 3444444 479999999999998776665 799999999
No 321
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=49.02 E-value=1.3e+02 Score=30.32 Aligned_cols=43 Identities=16% Similarity=0.174 Sum_probs=31.2
Q ss_pred HHHHHHHHcCCceeeecccCCC---CCCHHHHHHHHHHHHHHHhcc
Q 010627 311 TDVANAVLDGTDCVMLSGETAA---GAYPEVAVRTMAQICVEAEST 353 (505)
Q Consensus 311 ~Dv~nav~~G~D~imLs~Eta~---G~yP~~~V~~m~~i~~~aE~~ 353 (505)
.|.......|+||+|+.++-.. ..-+-+++..|..|+.+.=+.
T Consensus 33 ~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~ 78 (254)
T PF03437_consen 33 REAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRRE 78 (254)
T ss_pred HHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHh
Confidence 4555678889999999876421 112559999999999876543
No 322
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=49.01 E-value=2.3e+02 Score=26.57 Aligned_cols=128 Identities=16% Similarity=0.126 Sum_probs=71.5
Q ss_pred hcccccCCCEEEE-----cCCCCh----hHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc-CCeeEEecCcccC
Q 010627 195 KWGIPNQIDMIAL-----SFVRKG----SDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN-SDAFMVARGDLGM 264 (505)
Q Consensus 195 ~~al~~g~d~V~~-----sfV~sa----~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-sDgImIaRgDLg~ 264 (505)
+.+.+.|+|+|-+ +|+... +.++++++.. +....+--++.++ .+.++.+.+. +||+.|--+.
T Consensus 19 ~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~---~~~~~v~l~~~d~--~~~~~~~~~~g~dgv~vh~~~--- 90 (211)
T cd00429 19 KRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHT---DLPLDVHLMVENP--ERYIEAFAKAGADIITFHAEA--- 90 (211)
T ss_pred HHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhC---CCcEEEEeeeCCH--HHHHHHHHHcCCCEEEECccc---
Confidence 7888999999998 776443 4555555443 2223344566555 3346666655 6998773111
Q ss_pred cCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecc--cCCCC-CCHHHHHH
Q 010627 265 EIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG--ETAAG-AYPEVAVR 341 (505)
Q Consensus 265 e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~--Eta~G-~yP~~~V~ 341 (505)
.+ .....++.++++|..+++.+. |+.. . +....+..++|.+++.+ .+..| .+|....+
T Consensus 91 ---~~----~~~~~~~~~~~~~~~~g~~~~----------~~~~-~-~~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~ 151 (211)
T cd00429 91 ---TD----HLHRTIQLIKELGMKAGVALN----------PGTP-V-EVLEPYLDEVDLVLVMSVNPGFGGQKFIPEVLE 151 (211)
T ss_pred ---hh----hHHHHHHHHHHCCCeEEEEec----------CCCC-H-HHHHHHHhhCCEEEEEEECCCCCCcccCHHHHH
Confidence 01 123458888899988877532 2111 1 11233345588876643 13333 46666666
Q ss_pred HHHHHHHH
Q 010627 342 TMAQICVE 349 (505)
Q Consensus 342 ~m~~i~~~ 349 (505)
.++++.+.
T Consensus 152 ~i~~~~~~ 159 (211)
T cd00429 152 KIRKLREL 159 (211)
T ss_pred HHHHHHHH
Confidence 66555433
No 323
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=48.96 E-value=97 Score=31.20 Aligned_cols=87 Identities=13% Similarity=0.076 Sum_probs=55.8
Q ss_pred HHHHHhccCCCceEEEEecCHHHHhcHHHHHhcC--CeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhh
Q 010627 219 VRKLLGGHAKNILLMSKVENQEGVANFDDILANS--DAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQML 296 (505)
Q Consensus 219 v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~s--DgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmL 296 (505)
+++.|.+...-...+..+-++.. -||+..+ |.++|. .|=+.-.+..+ ..++.+|+.+|.+.++
T Consensus 10 lk~~l~~g~~~~g~~~~~~sp~~----~e~~a~~G~D~v~iD-----~EHg~~~~~~~-~~~i~a~~~~g~~~lV----- 74 (256)
T PRK10558 10 FKAALAAKQVQIGCWSALANPIT----TEVLGLAGFDWLVLD-----GEHAPNDVSTF-IPQLMALKGSASAPVV----- 74 (256)
T ss_pred HHHHHHcCCceEEEEEcCCCcHH----HHHHHhcCCCEEEEc-----cccCCCCHHHH-HHHHHHHhhcCCCcEE-----
Confidence 56666543222446666666654 3566554 999994 13333344444 4688899999999987
Q ss_pred HhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 297 ESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 297 eSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
.-|.+ +-..+..++..|+++||+.
T Consensus 75 ----Rvp~~---~~~~i~r~LD~Ga~giivP 98 (256)
T PRK10558 75 ----RVPTN---EPVIIKRLLDIGFYNFLIP 98 (256)
T ss_pred ----ECCCC---CHHHHHHHhCCCCCeeeec
Confidence 32334 4456677888899999994
No 324
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=48.91 E-value=66 Score=31.46 Aligned_cols=67 Identities=15% Similarity=0.242 Sum_probs=48.0
Q ss_pred HHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010627 215 DLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTA 292 (505)
Q Consensus 215 dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~A 292 (505)
-++.+++.+.+.+.++.+-+.-+.. .-+|++++++-.|.|+.+-.+. ..+..+-+.|+++++|.+.+
T Consensus 76 Ka~~~~~~l~~~np~~~i~~~~~~i-~~~~~~~~~~~~DvVi~~~d~~----------~~r~~l~~~~~~~~ip~i~~ 142 (228)
T cd00757 76 KAEAAAERLRAINPDVEIEAYNERL-DAENAEELIAGYDLVLDCTDNF----------ATRYLINDACVKLGKPLVSG 142 (228)
T ss_pred HHHHHHHHHHHhCCCCEEEEeccee-CHHHHHHHHhCCCEEEEcCCCH----------HHHHHHHHHHHHcCCCEEEE
Confidence 3556667777777777666544443 2367888888889888874332 35677889999999999875
No 325
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=48.70 E-value=1.2e+02 Score=30.57 Aligned_cols=93 Identities=26% Similarity=0.246 Sum_probs=56.6
Q ss_pred HHHHHHHHcCCceeeeccc--CCCCCC-HHHHHHHHHHHHHHHhcccCchhhHHhhhhCCCCCCCchhhHHHHHHHHHHh
Q 010627 311 TDVANAVLDGTDCVMLSGE--TAAGAY-PEVAVRTMAQICVEAESTLDYGDVFKRVMQHSPVPMSPLESLASSAVRTANS 387 (505)
Q Consensus 311 ~Dv~nav~~G~D~imLs~E--ta~G~y-P~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~ 387 (505)
.|-...-.-|+|++|+.+. +.+-++ +-+++..|..|.++.-+...- |.-.+...-=+.+|..+|+.
T Consensus 38 ~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~i-----------PvGvNVLrNd~vaA~~IA~a 106 (263)
T COG0434 38 RDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVSI-----------PVGVNVLRNDAVAALAIAYA 106 (263)
T ss_pred HHHHHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHhccc-----------cceeeeeccccHHHHHHHHh
Confidence 3444466789999999653 333222 358999999998776553321 11112211125566777888
Q ss_pred cCCcEE-------EEEcCCch---HHHHHHhhCCCCc
Q 010627 388 ARATLI-------LVLTRGGS---TAKLVAKYRPGMP 414 (505)
Q Consensus 388 ~~a~~I-------vv~T~sG~---ta~~ls~~RP~~p 414 (505)
.+|+.| +.+|..|- -|..+.|||++.+
T Consensus 107 ~gA~FIRVN~~tg~~~tdqGiieg~A~e~~r~r~~L~ 143 (263)
T COG0434 107 VGADFIRVNVLTGAYATDQGIIEGNAAELARYRARLG 143 (263)
T ss_pred cCCCEEEEEeeeceEecccceecchHHHHHHHHHhcc
Confidence 899988 45666664 3566667766544
No 326
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=48.37 E-value=5e+02 Score=30.22 Aligned_cols=47 Identities=13% Similarity=0.018 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhh--CCCCcEEEEeecc
Q 010627 375 ESLASSAVRTANSARATLILVLTRGGSTAKLVAKY--RPGMPILSVVVPE 422 (505)
Q Consensus 375 ~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~ls~~--RP~~pIiav~~p~ 422 (505)
+..+...+..|.+.+.+-+|+-|.+|+++..+|.+ +-..+.+.+ +|.
T Consensus 364 dR~Al~~i~~A~~~G~~~~IvetssGNhG~AlA~aaA~~Gl~c~Iv-mp~ 412 (695)
T PRK13802 364 INNALGQALLVKRMGKTRVIAETGAGQHGVATATVCAMLGLKCRIY-MGQ 412 (695)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEECcHHHHHHHHHHHHHcCCCEEEE-EeC
Confidence 34566667778888888788889999998765544 344666666 554
No 327
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=48.35 E-value=63 Score=32.13 Aligned_cols=67 Identities=12% Similarity=0.203 Sum_probs=47.2
Q ss_pred HHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeh
Q 010627 216 LVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTAT 293 (505)
Q Consensus 216 v~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~AT 293 (505)
++.+++.+.+.+.++.|-+--+.... +|++++++..|.|+-+-.+ +..+..+-+.|+++++|++.+.
T Consensus 80 a~~a~~~l~~inp~v~i~~~~~~i~~-~~~~~~~~~~DlVvd~~D~----------~~~r~~ln~~~~~~~ip~v~~~ 146 (240)
T TIGR02355 80 VESAKDALTQINPHIAINPINAKLDD-AELAALIAEHDIVVDCTDN----------VEVRNQLNRQCFAAKVPLVSGA 146 (240)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCH-HHHHHHhhcCCEEEEcCCC----------HHHHHHHHHHHHHcCCCEEEEE
Confidence 45556667777877776665443332 5788888888988876332 3457778899999999998763
No 328
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=48.32 E-value=59 Score=33.47 Aligned_cols=55 Identities=15% Similarity=0.096 Sum_probs=46.3
Q ss_pred EEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCCee
Q 010627 18 KIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGILC 74 (505)
Q Consensus 18 kIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~~v 74 (505)
.+..-+=- + +.+.+++.+++|.+..-+..||-+.++..+.-+.+++....++.++
T Consensus 79 PV~lHLDH-~-~~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~v 133 (293)
T PRK07315 79 PVAIHLDH-G-HYEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISV 133 (293)
T ss_pred cEEEECCC-C-CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 34444422 3 6889999999999999999999999999999999999988888665
No 329
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=48.20 E-value=2e+02 Score=29.43 Aligned_cols=87 Identities=17% Similarity=0.249 Sum_probs=48.9
Q ss_pred ceEEEEe--c-CHHHHhcHHHHHhc--CCeeEE---e-----cCcccCcCCchhHHHHHHHHHHHHHHc-CCCeEEehhh
Q 010627 230 ILLMSKV--E-NQEGVANFDDILAN--SDAFMV---A-----RGDLGMEIPIEKIFLAQKVMIYKCNIQ-GKPVVTATQM 295 (505)
Q Consensus 230 ~~IiakI--E-t~~av~nldeI~~~--sDgImI---a-----RgDLg~e~~~~~v~~~qk~Ii~~~~~~-gkpvi~ATqm 295 (505)
..+|+.| . +++-+...-+.++. +|+|=+ + +..+|..+. .-+..-.+++++.++. ++|+.+=
T Consensus 100 ~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~--~~~~~~~~iv~~v~~~~~~Pv~vK--- 174 (299)
T cd02940 100 KILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVG--QDPELVEEICRWVREAVKIPVIAK--- 174 (299)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhc--cCHHHHHHHHHHHHHhcCCCeEEE---
Confidence 4566666 4 55444433333332 455544 1 112333332 2245556677777654 7899863
Q ss_pred hHhhhcCCCCChHHHHHHHH-HHHcCCceeeecc
Q 010627 296 LESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSG 328 (505)
Q Consensus 296 LeSM~~~~~ptraEv~Dv~n-av~~G~D~imLs~ 328 (505)
-.|.-.++.+++. +...|+|++.+++
T Consensus 175 -------l~~~~~~~~~~a~~~~~~Gadgi~~~N 201 (299)
T cd02940 175 -------LTPNITDIREIARAAKEGGADGVSAIN 201 (299)
T ss_pred -------CCCCchhHHHHHHHHHHcCCCEEEEec
Confidence 2354456666666 5677999999875
No 330
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=47.81 E-value=1.8e+02 Score=29.51 Aligned_cols=96 Identities=21% Similarity=0.253 Sum_probs=57.2
Q ss_pred HHHHhc-CCeeEEecCccc--CcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHH-HHHcCC
Q 010627 246 DDILAN-SDAFMVARGDLG--MEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGT 321 (505)
Q Consensus 246 deI~~~-sDgImIaRgDLg--~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~n-av~~G~ 321 (505)
+-+++. .||+++. |--| ..+..++-..+-+.+++.+. -..|+++.+. ..+..|..+.+. |...|+
T Consensus 29 ~~l~~~Gv~gi~~~-Gs~GE~~~ls~~Er~~~~~~~~~~~~-~~~~vi~gv~---------~~~~~~~i~~a~~a~~~G~ 97 (292)
T PRK03170 29 DYLIANGTDGLVVV-GTTGESPTLTHEEHEELIRAVVEAVN-GRVPVIAGTG---------SNSTAEAIELTKFAEKAGA 97 (292)
T ss_pred HHHHHcCCCEEEEC-CcCCccccCCHHHHHHHHHHHHHHhC-CCCcEEeecC---------CchHHHHHHHHHHHHHcCC
Confidence 334433 6999984 3222 33444554445555555442 2367775432 223445555544 556699
Q ss_pred ceeeecccCCCCCCHHHHHHHHHHHHHHHhc
Q 010627 322 DCVMLSGETAAGAYPEVAVRTMAQICVEAES 352 (505)
Q Consensus 322 D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~ 352 (505)
|++|+..=.-....+-+.++....|+..++.
T Consensus 98 d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~ 128 (292)
T PRK03170 98 DGALVVTPYYNKPTQEGLYQHFKAIAEATDL 128 (292)
T ss_pred CEEEECCCcCCCCCHHHHHHHHHHHHhcCCC
Confidence 9999976554444578889999999887653
No 331
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=47.61 E-value=47 Score=30.49 Aligned_cols=53 Identities=17% Similarity=0.190 Sum_probs=39.0
Q ss_pred HHhcHHHHHh--cCCe--eEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeh
Q 010627 241 GVANFDDILA--NSDA--FMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTAT 293 (505)
Q Consensus 241 av~nldeI~~--~sDg--ImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~AT 293 (505)
.++++++.+. -.|. +++|-.|+....+.+++..-.+.+++.+++.|.++++.|
T Consensus 47 ~l~~l~~~~~~~~~d~v~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~ 103 (183)
T cd04501 47 MLVRFYEDVIALKPAVVIIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILAS 103 (183)
T ss_pred HHHHHHHHHHhcCCCEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEe
Confidence 4445554332 2464 445777998878888999999999999999999888754
No 332
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=47.59 E-value=1.4e+02 Score=30.87 Aligned_cols=95 Identities=11% Similarity=0.066 Sum_probs=54.7
Q ss_pred HHhcccccCCCEEEEc------CCCChhHHHH-HHHHHhccCCCceEEEEec---CHHHHhcHHHHHhc-CCeeEEecCc
Q 010627 193 ILKWGIPNQIDMIALS------FVRKGSDLVG-VRKLLGGHAKNILLMSKVE---NQEGVANFDDILAN-SDAFMVARGD 261 (505)
Q Consensus 193 i~~~al~~g~d~V~~s------fV~sa~dv~~-v~~~l~~~~~~~~IiakIE---t~~av~nldeI~~~-sDgImIaRgD 261 (505)
+.++.++.|+++|++. +.-|.++=++ ++...+..+.++.||+-+= +.++++....-.+. +|++|+.+-.
T Consensus 34 lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~ 113 (309)
T cd00952 34 LVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPM 113 (309)
T ss_pred HHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCc
Confidence 3378889999999863 1223333333 3444445566788999884 45566555554443 6999996542
Q ss_pred ccCcCCchhHHHHHHHHHHHHHHc-CCCeEE
Q 010627 262 LGMEIPIEKIFLAQKVMIYKCNIQ-GKPVVT 291 (505)
Q Consensus 262 Lg~e~~~~~v~~~qk~Ii~~~~~~-gkpvi~ 291 (505)
.- ....+.+...-+.|.+ +. +.|+++
T Consensus 114 y~-~~~~~~l~~yf~~va~---a~~~lPv~i 140 (309)
T cd00952 114 WL-PLDVDTAVQFYRDVAE---AVPEMAIAI 140 (309)
T ss_pred CC-CCCHHHHHHHHHHHHH---hCCCCcEEE
Confidence 21 1122444444444444 45 588876
No 333
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=47.58 E-value=1.2e+02 Score=29.42 Aligned_cols=44 Identities=25% Similarity=0.480 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHh-cCCcEEEEEcCCch--HHHHHHh-----h---CCCCcEEEE
Q 010627 375 ESLASSAVRTANS-ARATLILVLTRGGS--TAKLVAK-----Y---RPGMPILSV 418 (505)
Q Consensus 375 ~~ia~~av~~a~~-~~a~~Ivv~T~sG~--ta~~ls~-----~---RP~~pIiav 418 (505)
+.+..++-.++.. .++.-|+++-..|+ .|+.++. | ||..|.+++
T Consensus 25 ~~i~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l 79 (196)
T PRK10886 25 DAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIAL 79 (196)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEe
Confidence 4455555555554 46677888877444 4555552 3 999999998
No 334
>PRK07334 threonine dehydratase; Provisional
Probab=47.47 E-value=2.2e+02 Score=30.44 Aligned_cols=115 Identities=17% Similarity=0.249 Sum_probs=69.7
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCc
Q 010627 277 VMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDY 356 (505)
Q Consensus 277 ~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 356 (505)
-+...|+.+|.|+++- .|..+.-..+...-..|++.++.. ...-++++...+++++. .. +|
T Consensus 85 alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~v~~~~------~~~~~~~~~a~~l~~~~-~~-~~ 145 (403)
T PRK07334 85 GVAYHAQRLGIPATIV-----------MPRFTPTVKVERTRGFGAEVVLHG------ETLDEARAHARELAEEE-GL-TF 145 (403)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEEC------cCHHHHHHHHHHHHHhc-CC-Ee
Confidence 4566899999999763 233333344566677899998652 24556777766665442 11 11
Q ss_pred hhhHHhhhhCCCCCCCchhhHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 010627 357 GDVFKRVMQHSPVPMSPLESLASSAVRTANSA-RATLILVLTRGGSTAKLVAK----YRPGMPILSV 418 (505)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~-~a~~Ivv~T~sG~ta~~ls~----~RP~~pIiav 418 (505)
..-|. . + ...+....-+.++..++ ..+.+|+..-+|.|+--+++ ++|...|+++
T Consensus 146 ~~~~~-----~--~-~~~~g~~t~~~Ei~~q~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~v 204 (403)
T PRK07334 146 VHPYD-----D--P-AVIAGQGTVALEMLEDAPDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGV 204 (403)
T ss_pred cCCCC-----C--H-HHHHhHHHHHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 11110 0 1 11122233445555555 36899999999998665555 4899999999
No 335
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=47.15 E-value=1e+02 Score=30.31 Aligned_cols=42 Identities=24% Similarity=0.246 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeee
Q 010627 272 FLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 326 (505)
Q Consensus 272 ~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imL 326 (505)
..+....++.++++|+++++-|- -+ ..+...++..|+|+|+-
T Consensus 217 ~~~~~~~i~~~~~~G~~v~vwtv----------n~---~~~~~~~~~~Gvdgi~T 258 (263)
T cd08567 217 TLVTKELVDEAHALGLKVVPWTV----------ND---PEDMARLIDLGVDGIIT 258 (263)
T ss_pred hhcCHHHHHHHHHCCCEEEEecC----------CC---HHHHHHHHHcCCCEEEc
Confidence 34667899999999999998772 11 23556788889999875
No 336
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=47.08 E-value=4.8e+02 Score=29.64 Aligned_cols=186 Identities=17% Similarity=0.106 Sum_probs=109.7
Q ss_pred CCChhcHHHHHhcccccCCCEEEE----------cCCCChhHHHHHHHHHhccCCCceEEEEe--cCHHHHhc-------
Q 010627 184 TLTEKDKEDILKWGIPNQIDMIAL----------SFVRKGSDLVGVRKLLGGHAKNILLMSKV--ENQEGVAN------- 244 (505)
Q Consensus 184 ~lte~D~~di~~~al~~g~d~V~~----------sfV~sa~dv~~v~~~l~~~~~~~~IiakI--Et~~av~n------- 244 (505)
.++..|+..|.....+.|++.|=+ +|+. .++.+.++.+ .+...++.+.+.. -|..|..+
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~-e~~~e~l~~l-~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~ 94 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLN-EDPWERLREL-KKALPNTPLQMLLRGQNLLGYRHYADDVVE 94 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCC-CCHHHHHHHH-HHhCCCCEEEEEEccccccccccCchhhHH
Confidence 567777777756666678887744 6664 4455555554 3333455555543 33333322
Q ss_pred --HHHHHhc-CCeeEE--ecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHH-HHH
Q 010627 245 --FDDILAN-SDAFMV--ARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVL 318 (505)
Q Consensus 245 --ldeI~~~-sDgImI--aRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~n-av~ 318 (505)
++.-++. .|.+-| +-.| + .-.+..++.++++|+.+-.+ + ++..+|.=|.....+++. +..
T Consensus 95 ~~v~~a~~~Gvd~irif~~lnd---------~-~n~~~~i~~ak~~G~~v~~~---i-~~t~~p~~~~~~~~~~~~~~~~ 160 (582)
T TIGR01108 95 RFVKKAVENGMDVFRIFDALND---------P-RNLQAAIQAAKKHGAHAQGT---I-SYTTSPVHTLETYLDLAEELLE 160 (582)
T ss_pred HHHHHHHHCCCCEEEEEEecCc---------H-HHHHHHHHHHHHcCCEEEEE---E-EeccCCCCCHHHHHHHHHHHHH
Confidence 1111211 364433 3333 2 23566778999999987644 1 444466557777777776 455
Q ss_pred cCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCchhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcCCcEEEEEcC
Q 010627 319 DGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDYGDVFKRVMQHSPVPMSPLESLASSAVRTANSARATLILVLTR 398 (505)
Q Consensus 319 ~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~ 398 (505)
.|+|.|.| .+|+=.-.|.++-+.++.+.++...-+. -|+ ++ ..-+|.+...+|-+.+|+ +|=-|-
T Consensus 161 ~Gad~I~i-~Dt~G~~~P~~v~~lv~~lk~~~~~pi~--~H~----------Hn-t~Gla~An~laAveaGa~-~vd~ai 225 (582)
T TIGR01108 161 MGVDSICI-KDMAGILTPKAAYELVSALKKRFGLPVH--LHS----------HA-TTGMAEMALLKAIEAGAD-GIDTAI 225 (582)
T ss_pred cCCCEEEE-CCCCCCcCHHHHHHHHHHHHHhCCCceE--EEe----------cC-CCCcHHHHHHHHHHhCCC-EEEecc
Confidence 79999999 6999999999998888887644321111 111 11 123566666777788888 454444
Q ss_pred Cc
Q 010627 399 GG 400 (505)
Q Consensus 399 sG 400 (505)
+|
T Consensus 226 ~G 227 (582)
T TIGR01108 226 SS 227 (582)
T ss_pred cc
Confidence 44
No 337
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=46.93 E-value=2.1e+02 Score=30.04 Aligned_cols=131 Identities=17% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc-CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCe---EE
Q 010627 216 LVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN-SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPV---VT 291 (505)
Q Consensus 216 v~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpv---i~ 291 (505)
+..++.+..+.+..+++.-.+.+..-++.+.+-++. .+-||+. |-.+|+++=...-+++++.|+.+|..| +-
T Consensus 72 ~~~~~~~a~~a~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiD----~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG 147 (321)
T PRK07084 72 AQGAVEYAKELGCPIPIVLHLDHGDSFELCKDCIDSGFSSVMID----GSHLPYEENVALTKKVVEYAHQFDVTVEGELG 147 (321)
T ss_pred HHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEee----CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEe
Q ss_pred ehhhhHhhhcCCCCChHHHHHHHHHHHc-CCceeeecccCCCCCC--------HHHHHHHHHHHHHHH
Q 010627 292 ATQMLESMIKSPRPTRAEATDVANAVLD-GTDCVMLSGETAAGAY--------PEVAVRTMAQICVEA 350 (505)
Q Consensus 292 ATqmLeSM~~~~~ptraEv~Dv~nav~~-G~D~imLs~Eta~G~y--------P~~~V~~m~~i~~~a 350 (505)
.--=.|--.....-......+...++.. |+|++-.|--|+.|.| |.--.+.+.+|-.+.
T Consensus 148 ~igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~ 215 (321)
T PRK07084 148 VLAGVEDEVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRI 215 (321)
T ss_pred eecCccCCccCcccccCCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhc
No 338
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=46.92 E-value=2.1e+02 Score=29.49 Aligned_cols=126 Identities=13% Similarity=0.135 Sum_probs=0.0
Q ss_pred ChhcHHHHHhcccccCCCEEEEc----------------CCCChhHHHHHHHHHhccCCCceEEEEe-----cCHHHHhc
Q 010627 186 TEKDKEDILKWGIPNQIDMIALS----------------FVRKGSDLVGVRKLLGGHAKNILLMSKV-----ENQEGVAN 244 (505)
Q Consensus 186 te~D~~di~~~al~~g~d~V~~s----------------fV~sa~dv~~v~~~l~~~~~~~~IiakI-----Et~~av~n 244 (505)
+..+.....+.+.+.|+|+|=+. ..++++-+.++-+.+.+.-. +.|.+|| ++..-...
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~-~pv~vKir~g~~~~~~~~~~ 151 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVD-IPVTVKIRIGWDDAHINAVE 151 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcC-CCEEEEEEcccCCCcchHHH
Q ss_pred HHHHHhcC--CeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHH-HcCC
Q 010627 245 FDDILANS--DAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAV-LDGT 321 (505)
Q Consensus 245 ldeI~~~s--DgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav-~~G~ 321 (505)
+-..++.+ |+|.+....-.--++-.--...-++|.+..+ .|++....+- ...|+..++ ..|+
T Consensus 152 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~---ipvi~nGgI~------------~~~da~~~l~~~ga 216 (319)
T TIGR00737 152 AARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVR---IPVIGNGDIF------------SPEDAKAMLETTGC 216 (319)
T ss_pred HHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCC---CcEEEeCCCC------------CHHHHHHHHHhhCC
Q ss_pred ceeeec
Q 010627 322 DCVMLS 327 (505)
Q Consensus 322 D~imLs 327 (505)
|++|+.
T Consensus 217 d~Vmig 222 (319)
T TIGR00737 217 DGVMIG 222 (319)
T ss_pred CEEEEC
No 339
>PRK08185 hypothetical protein; Provisional
Probab=46.87 E-value=63 Score=33.18 Aligned_cols=48 Identities=8% Similarity=0.083 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCCee
Q 010627 27 SRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGILC 74 (505)
Q Consensus 27 ~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~~v 74 (505)
+.+.+.+++.+++|.+.+-+.-||-+.+++.+.-..+.+....+|.++
T Consensus 78 g~~~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~v 125 (283)
T PRK08185 78 GATIEDVMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSV 125 (283)
T ss_pred CCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 347999999999999999999999999999999999998888888664
No 340
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=46.54 E-value=2.6e+02 Score=29.32 Aligned_cols=149 Identities=15% Similarity=0.158 Sum_probs=90.8
Q ss_pred hhcHHHHHhcccccCC--CEEEEcCCCChhHHHHHHHHHhccCCCceEEEEe-cCHHHHhcHHHHHhcC----CeeEEec
Q 010627 187 EKDKEDILKWGIPNQI--DMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKV-ENQEGVANFDDILANS----DAFMVAR 259 (505)
Q Consensus 187 e~D~~di~~~al~~g~--d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakI-Et~~av~nldeI~~~s----DgImIaR 259 (505)
++|.+-| +.+++.-- ..++-| -+.+..+++-.+..+.|. .+++.- -..+....+-+.+... +-|++.+
T Consensus 136 ~kD~evl-eaale~~~g~~pLInS--at~en~~~i~~lA~~y~~--~Vva~s~~Dln~ak~L~~~l~~~Gi~~edIviDP 210 (319)
T PRK04452 136 EKDAEVL-EKVAEAAEGERCLLGS--AEEDNYKKIAAAAMAYGH--AVIAWSPLDINLAKQLNILLTELGVPRERIVMDP 210 (319)
T ss_pred CCCHHHH-HHHHHHhCCCCCEEEE--CCHHHHHHHHHHHHHhCC--eEEEEcHHHHHHHHHHHHHHHHcCCCHHHEEEeC
Confidence 5688888 77777422 235555 346677777777665543 455542 2233333333333322 5678899
Q ss_pred CcccCcCCchhHHHHHHHHHHHHHH----cCCCeEEehhhh------Hhhh-------cCCCCChH---HHHHHHHHHHc
Q 010627 260 GDLGMEIPIEKIFLAQKVMIYKCNI----QGKPVVTATQML------ESMI-------KSPRPTRA---EATDVANAVLD 319 (505)
Q Consensus 260 gDLg~e~~~~~v~~~qk~Ii~~~~~----~gkpvi~ATqmL------eSM~-------~~~~ptra---Ev~Dv~nav~~ 319 (505)
+=..+..+.+.....+.+|-.++-+ .|-|+|..+ .. |+.. ..++-.|+ |+.--...+..
T Consensus 211 ~~~~lg~g~e~~~~~~e~IR~aAl~~d~~l~~P~i~~~-~~~~~~~kea~~~~~~~~~~g~~~~r~~~~E~~~a~~~~~~ 289 (319)
T PRK04452 211 TTGALGYGIEYSYSVMERIRLAALKGDEMLQMPMISGV-GFEAWKAKEAWMPEEEDPEWGPREYRGILWEAVTALTLLLA 289 (319)
T ss_pred CcccccCCHHHHHHHHHHHHHHHhcCCCcCCCCeEecc-hhhhhhccccccccccccccccchhccHHHHHHHHHHHHHh
Confidence 8887778888777777777777754 556755322 21 2211 01111233 56666668889
Q ss_pred CCceeeecccCCCCCCHHHHHHHHHHHHHH
Q 010627 320 GTDCVMLSGETAAGAYPEVAVRTMAQICVE 349 (505)
Q Consensus 320 G~D~imLs~Eta~G~yP~~~V~~m~~i~~~ 349 (505)
|+|.++| +|| ++|+++++++..
T Consensus 290 ga~i~vm-------~hp-~s~~~~~~~~~~ 311 (319)
T PRK04452 290 GADIFMM-------RHP-ESVKTLKEIIDT 311 (319)
T ss_pred cCcEEEE-------eCH-HHHHHHHHHHHH
Confidence 9999999 688 899999887653
No 341
>PRK10717 cysteine synthase A; Provisional
Probab=46.13 E-value=2.4e+02 Score=29.10 Aligned_cols=126 Identities=13% Similarity=0.128 Sum_probs=66.3
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCc
Q 010627 277 VMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDY 356 (505)
Q Consensus 277 ~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 356 (505)
-+...|+.+|.|+.+- .|..+.-.-+...-..|++.+...+. . ...|-..++...+++++.+.....
T Consensus 78 alA~~a~~~G~~~~vv-----------~p~~~~~~k~~~~~~~GA~V~~~~~~-~-~~~~~~~~~~a~~~a~~~~~~~~~ 144 (330)
T PRK10717 78 GLALVAAARGYKTVIV-----------MPETQSQEKKDLLRALGAELVLVPAA-P-YANPNNYVKGAGRLAEELVASEPN 144 (330)
T ss_pred HHHHHHHHcCCcEEEE-----------eCCCCCHHHHHHHHHcCCEEEEeCCc-c-cccccchHHHHHHHHHHHHhhCCC
Confidence 4556889999998763 23333333456666789998777532 1 111222344444444443221000
Q ss_pred hhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHH----hhCCCCcEEEE
Q 010627 357 GDVFKRVMQHSPVPMSPLESLASSAVRTANSAR--ATLILVLTRGGSTAKLVA----KYRPGMPILSV 418 (505)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--a~~Ivv~T~sG~ta~~ls----~~RP~~pIiav 418 (505)
...+.. ....|.....-...-+.++..+++ .+.||+..-+|.++--++ .++|.+.|+++
T Consensus 145 ~~~~~~---~~~~~~~~~~g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~V 209 (330)
T PRK10717 145 GAIWAN---QFDNPANREAHYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLA 209 (330)
T ss_pred CeEecC---CCCChhhHHHHHHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 000000 000011110112234566666764 799999999998866544 45799999999
No 342
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=45.99 E-value=1.4e+02 Score=27.28 Aligned_cols=40 Identities=15% Similarity=0.167 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeee
Q 010627 274 AQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 326 (505)
Q Consensus 274 ~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imL 326 (505)
+..++++.|+++|+++++-|- . +..+...++..|+|+|+-
T Consensus 148 ~~~~~i~~~~~~g~~v~~wtv----------n---~~~~~~~~~~~GVdgI~T 187 (189)
T cd08556 148 LTPELVRAAHAAGLKVYVWTV----------N---DPEDARRLLALGVDGIIT 187 (189)
T ss_pred CCHHHHHHHHHcCCEEEEEcC----------C---CHHHHHHHHHCCCCEEec
Confidence 568999999999999998662 1 244566778889999874
No 343
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=45.82 E-value=1.2e+02 Score=32.51 Aligned_cols=325 Identities=20% Similarity=0.237 Sum_probs=163.5
Q ss_pred CCCCCCCCcccccCCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHH----HHHHHHHHHHHHHHHcCCeeEE
Q 010627 1 MDANCGVSTAIEKKPKTKIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHE----YHQETLNNLRTAMVNTGILCAV 76 (505)
Q Consensus 1 ~~~~~~~~~~~~~~r~tkIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~----~~~~~i~~ir~~~~~~~~~v~i 76 (505)
+|.|+|++.. .-.-.++|-+++ ..|+.|++.|..+.= +||-... ....+-.-.+..++.++.+|..
T Consensus 18 vD~NvPi~~g-~I~dd~RI~~~l-------pTI~~l~~~gakvvl--~sH~gRP~g~~~~~SL~~va~~L~~lL~~~V~f 87 (389)
T PRK00073 18 VDFNVPVKDG-KITDDTRIRAAL-------PTIKYLLEKGAKVIL--LSHLGRPKGEDPEFSLAPVAKRLSELLGKEVKF 87 (389)
T ss_pred eccCCCCcCC-cCCChHhHHHHH-------HHHHHHHHCCCeEEE--EEecCCCCCCCCCcCHHHHHHHHHHHhCCCeEE
Confidence 4788888542 112345555544 489999999998654 4775522 1111111122234457888888
Q ss_pred EEecCCCeeEEeecCCCCcEEecCCCEEEEEecCCCCCCccEEEecchhhhcccCCCCEEEEeCCeEEEEEEEEeeeCCe
Q 010627 77 MLDTKGPEIRTGFLKDGKPIQLKQGQEITISTDYTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGL 156 (505)
Q Consensus 77 ~~Dl~GpkiR~g~~~~~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~~~ 156 (505)
.-|.-|++.+-- .-.|++|+.+.|-.-.-..+.+ -|.+.|.+.+.+.-.||++|.- -+- ....-+
T Consensus 88 v~d~~g~~~~~~------i~~l~~G~ilLLEN~Rf~~~E~----~~d~~~a~~LA~l~DiyVNDAF---g~a--HR~haS 152 (389)
T PRK00073 88 VDDCIGEEAREA------IAALKDGEVLLLENVRFNKGEE----KNDPELAKKLASLGDVFVNDAF---GTA--HRAHAS 152 (389)
T ss_pred CCCCCCHHHHHH------HhcCCCCcEEEEeccCcCcccc----cCHHHHHHHHHHhCCEEEECch---hhh--hhcccc
Confidence 778878766511 1246666666554321111211 1446677777765558888832 211 000000
Q ss_pred EEEEEeeCceecCCCCcccCCccccCCCCChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCC-ceEE--
Q 010627 157 VKCRCENSAMLGERKNVNLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKN-ILLM-- 233 (505)
Q Consensus 157 i~~~v~~gG~l~s~Kgvnlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~-~~Ii-- 233 (505)
+-|...-+| .. .. .+.+ .+++..+.+.+..-.+. +.|+
T Consensus 153 ------------------~vgi~~~lp---~~---~a-G~lm--------------ekEl~~L~k~l~~p~rP~vaIlGG 193 (389)
T PRK00073 153 ------------------TVGIAKFLK---PA---AA-GFLM--------------EKELEALGKALENPERPFVAILGG 193 (389)
T ss_pred ------------------hhchhhhCc---hh---hh-hHHH--------------HHHHHHHHHHhcCCCCCeEEEEcC
Confidence 001100011 00 00 1111 45777777766532222 2233
Q ss_pred EEecCHHHHhcHHHHHhcCCeeEEec-----------CcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcC
Q 010627 234 SKVENQEGVANFDDILANSDAFMVAR-----------GDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKS 302 (505)
Q Consensus 234 akIEt~~av~nldeI~~~sDgImIaR-----------gDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~ 302 (505)
||+.+.-.+ ++.++..+|.+++|- .+.|.++--++....-++|++.|++.|+.+++-+-..-+=...
T Consensus 194 aKvsdKi~v--i~~Ll~~~D~liigG~ma~tFl~A~G~~ig~sl~e~~~i~~a~~il~~a~~~~~~i~lPvD~vv~~~~~ 271 (389)
T PRK00073 194 AKVSDKIGV--LENLLEKVDKLIIGGGMANTFLKAQGYNVGKSLVEEDLIDTAKELLEKAKEKGVKIPLPVDVVVAKEFS 271 (389)
T ss_pred ccHHhHHHH--HHHHHHhhhhheeChHHHHHHHHHcCCCcChhhcchhhHHHHHHHHHHHHhcCCEEECCCeeEEeeccC
Confidence 678775554 777788899999952 2455444334566667899999999999876532222000000
Q ss_pred CCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCchh--hHHhhhhCCCCCCCchhhHHHH
Q 010627 303 PRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDYGD--VFKRVMQHSPVPMSPLESLASS 380 (505)
Q Consensus 303 ~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~--~~~~~~~~~~~~~~~~~~ia~~ 380 (505)
..+++ ++ ++ ..+-+ |...|. +| -++++..++++..|...+|.-. .|+ .+.-..-+.+++.+
T Consensus 272 ~~~~~-~~-~~-~~ip~--~~~~lD----IG---p~Ti~~~~~~i~~akti~wNGP~GvfE-----~~~F~~GT~~l~~a 334 (389)
T PRK00073 272 DAEAT-VV-SV-DEIPD--DWMILD----IG---PKTIELFAEIIKDAKTIVWNGPMGVFE-----FENFAKGTKAVAKA 334 (389)
T ss_pred CCceE-Ee-Ec-ccCCC--CCeeee----cC---HHHHHHHHHHHhhCCEEEEECCCCccc-----cccchHHHHHHHHH
Confidence 00000 00 00 00111 112221 22 2789999999999999887542 222 11111223444443
Q ss_pred HHHHHHhcCCcEEEEEcCCchHHHHHHhhCCCCcE
Q 010627 381 AVRTANSARATLILVLTRGGSTAKLVAKYRPGMPI 415 (505)
Q Consensus 381 av~~a~~~~a~~Ivv~T~sG~ta~~ls~~RP~~pI 415 (505)
... ..+ ..+--.|.|+..+.++--.-.+
T Consensus 335 ia~----~~a---~sivGGGdt~aa~~~~g~~~~~ 362 (389)
T PRK00073 335 IAE----STA---FSIIGGGDTAAAVEKLGLADKF 362 (389)
T ss_pred HHh----cCC---eEEEcCCHHHHHHHHcCCCCCc
Confidence 322 122 2222378899888887544443
No 344
>PRK15456 universal stress protein UspG; Provisional
Probab=45.81 E-value=44 Score=29.52 Aligned_cols=40 Identities=25% Similarity=0.368 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCcEEEEEcCC--------chHHHHHHhhCCCCcEEEE
Q 010627 378 ASSAVRTANSARATLILVLTRG--------GSTAKLVAKYRPGMPILSV 418 (505)
Q Consensus 378 a~~av~~a~~~~a~~Ivv~T~s--------G~ta~~ls~~RP~~pIiav 418 (505)
+...++.|.+.+++.||+-|+. |+++..+.+.-| |||+.+
T Consensus 94 ~~~I~~~a~~~~~DLIVmG~~g~~~~~~llGS~a~~v~~~a~-~pVLvV 141 (142)
T PRK15456 94 RDEVNELAEELGADVVVIGSRNPSISTHLLGSNASSVIRHAN-LPVLVV 141 (142)
T ss_pred HHHHHHHHhhcCCCEEEEcCCCCCccceecCccHHHHHHcCC-CCEEEe
Confidence 4445667889999999998873 567777777755 999986
No 345
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=45.68 E-value=66 Score=31.52 Aligned_cols=75 Identities=20% Similarity=0.220 Sum_probs=51.0
Q ss_pred cCCCeEEEEec-----CCCCCC-HHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCCee-EEEEecCCCee
Q 010627 13 KKPKTKIVCTL-----GPASRS-VPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGILC-AVMLDTKGPEI 85 (505)
Q Consensus 13 ~~r~tkIi~Ti-----Gp~~~~-~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~~v-~i~~Dl~Gpki 85 (505)
+.+++|||++- .|+..+ .+.+++|.+.|.|+.+|-..--+.++..+++...+++......|+ ++-+ |+.=
T Consensus 115 ~~~~~kvI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~p~i~~~M---G~~G 191 (228)
T TIGR01093 115 KKGGTKIIMSYHDFQKTPSWEEIVERLEKALSYGADIVKIAVMANSKEDVLTLLEITNKVDEHADVPLITMSM---GDRG 191 (228)
T ss_pred HHCCCEEEEeccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEeccCCHHHHHHHHHHHHHHHhcCCCCEEEEeC---CCCC
Confidence 35689999998 343322 357788999999999999887778888888887777654445564 3333 4444
Q ss_pred EEeec
Q 010627 86 RTGFL 90 (505)
Q Consensus 86 R~g~~ 90 (505)
|..++
T Consensus 192 ~~SRi 196 (228)
T TIGR01093 192 KISRV 196 (228)
T ss_pred hhHhh
Confidence 44433
No 346
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=45.47 E-value=81 Score=30.66 Aligned_cols=60 Identities=13% Similarity=0.227 Sum_probs=39.3
Q ss_pred EecCCCEEEEEec----CCCCCCccEEEecchhhh--cccCCCCEEEE--eCCeEEEEEEEEeeeCCeEE
Q 010627 97 QLKQGQEITISTD----YTIKGDENMICMSYKKLA--VDVQPGSVILC--SDGTISFTVLECNVKAGLVK 158 (505)
Q Consensus 97 ~l~~G~~v~l~~~----~~~~~~~~~i~v~~~~~~--~~v~~Gd~I~i--dDG~i~l~V~~v~~~~~~i~ 158 (505)
-++.|+++.++.. +..-.......++-..|. ..+++|++++. ++|.+.++|++ ++++.|+
T Consensus 51 G~~~Gd~~~v~l~peeAyGe~d~~lV~~vpr~~F~~~~~l~~G~~~~~~~~~G~~~~~V~e--v~~d~V~ 118 (196)
T PRK10737 51 GHEVGDKFDVAVGANDAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITA--VEDDHVV 118 (196)
T ss_pred CCCCCCEEEEEEChHHhcCCCChHHEEEecHHHCCCccCCCCCCEEEEeCCCCcEEEEEEE--EcCCEEE
Confidence 4678999888875 222222224446555553 35899999987 47888888885 4666654
No 347
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=45.43 E-value=96 Score=30.49 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=39.3
Q ss_pred HHHHHHHHHhC-CcEEEEecCCCCHHHHHHHHHHHHHHHHHcCCe
Q 010627 30 VPMIEKLLKAG-MNVARFNFSHGSHEYHQETLNNLRTAMVNTGIL 73 (505)
Q Consensus 30 ~~~i~~li~~G-~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~~ 73 (505)
.+.+++.++.| ++.+-+-..+-+.+++.++.+.+++..++++.+
T Consensus 29 ~~~l~~al~~G~v~~vQlR~K~l~~~~~~~~a~~l~~l~~~~gv~ 73 (221)
T PRK06512 29 AKLLRAALQGGDVASVILPQYGLDEATFQKQAEKLVPVIQEAGAA 73 (221)
T ss_pred HHHHHHHHcCCCccEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCE
Confidence 47899999999 799999999999999999999999998888744
No 348
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=45.12 E-value=3.7e+02 Score=27.83 Aligned_cols=130 Identities=13% Similarity=0.140 Sum_probs=74.0
Q ss_pred hcccccCCCEEEEcCCCChhHHHH---HHHHHhccCCCceEEEEec--CHHHHhcHHHHHhc--CCeeEEecCcccCcCC
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVG---VRKLLGGHAKNILLMSKVE--NQEGVANFDDILAN--SDAFMVARGDLGMEIP 267 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~---v~~~l~~~~~~~~IiakIE--t~~av~nldeI~~~--sDgImIaRgDLg~e~~ 267 (505)
.++.++|+++...+|+.....+.. .+..+.....+..++.+|- +++.+...-.++.. .|+| ||.+.+|
T Consensus 27 ~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g~~~~~~~~aa~~~~~~g~d~I-----dlN~gCP 101 (321)
T PRK10415 27 TLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQII-----DINMGCP 101 (321)
T ss_pred HHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEeCCCHHHHHHHHHHHHHCCCCEE-----EEeCCCC
Confidence 446788999988899888654321 1112222223345678884 44444333333322 2444 5556666
Q ss_pred chhH------------HHHHHHHHHHHHH-cCCCeEEehhhhHhhhcCCCCChHHHHHHHH-HHHcCCceeeecccCCCC
Q 010627 268 IEKI------------FLAQKVMIYKCNI-QGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSGETAAG 333 (505)
Q Consensus 268 ~~~v------------~~~qk~Ii~~~~~-~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~n-av~~G~D~imLs~Eta~G 333 (505)
..++ |..-++|+++.++ .++|+.+=.. ..-.++..+..+++. +...|+|++.+.+-|..+
T Consensus 102 ~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR------~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~ 175 (321)
T PRK10415 102 AKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIR------TGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRAC 175 (321)
T ss_pred HHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEE------ccccCCcchHHHHHHHHHHhCCCEEEEecCcccc
Confidence 5322 5556677777755 4788876332 111233334556665 456799999999887655
Q ss_pred CC
Q 010627 334 AY 335 (505)
Q Consensus 334 ~y 335 (505)
.|
T Consensus 176 ~~ 177 (321)
T PRK10415 176 LF 177 (321)
T ss_pred cc
Confidence 44
No 349
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=44.95 E-value=1.3e+02 Score=30.22 Aligned_cols=87 Identities=14% Similarity=0.075 Sum_probs=54.7
Q ss_pred HHHHHhccCCCceEEEEecCHHHHhcHHHHHhcC--CeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhh
Q 010627 219 VRKLLGGHAKNILLMSKVENQEGVANFDDILANS--DAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQML 296 (505)
Q Consensus 219 v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~s--DgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmL 296 (505)
+|+.|.+...-...+..+-++.. -||+..+ |.++|. +|=+.-.+..+ ..++.+|+..|.++++
T Consensus 3 lk~~l~~g~~~~G~~~~~~sp~~----~e~~a~~G~D~v~iD-----~EHg~~~~~~~-~~~~~a~~~~g~~~~V----- 67 (249)
T TIGR03239 3 FRQDLLARETLIGCWSALGNPIT----TEVLGLAGFDWLLLD-----GEHAPNDVLTF-IPQLMALKGSASAPVV----- 67 (249)
T ss_pred HHHHHHcCCceEEEEEcCCCcHH----HHHHHhcCCCEEEEe-----cccCCCCHHHH-HHHHHHHhhcCCCcEE-----
Confidence 45555542222446666666644 4556554 999995 13333344444 4677889999999887
Q ss_pred HhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 297 ESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 297 eSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
.-|.+ +-..+..++..|+++||+.
T Consensus 68 ----Rvp~~---~~~~i~r~LD~Ga~gIivP 91 (249)
T TIGR03239 68 ----RPPWN---EPVIIKRLLDIGFYNFLIP 91 (249)
T ss_pred ----ECCCC---CHHHHHHHhcCCCCEEEec
Confidence 32333 4456677888899999994
No 350
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=44.77 E-value=74 Score=31.69 Aligned_cols=66 Identities=14% Similarity=0.220 Sum_probs=46.4
Q ss_pred HHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010627 216 LVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTA 292 (505)
Q Consensus 216 v~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~A 292 (505)
++.+++.|.+.+.++.|.+.-+... -+|++++++-.|.|+.+-.+ +..+..+-+.|+++++|++.+
T Consensus 88 a~~a~~~l~~lnp~v~i~~~~~~i~-~~~~~~~~~~~DiVi~~~D~----------~~~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 88 VESARAALARINPHIAIETINARLD-DDELAALIAGHDLVLDCTDN----------VATRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCC-HHHHHHHHhcCCEEEecCCC----------HHHHHHHHHHHHHhCCEEEEe
Confidence 5555666777777777766544332 25678888888988876322 246778889999999999865
No 351
>PLN03013 cysteine synthase
Probab=44.45 E-value=3e+02 Score=29.99 Aligned_cols=118 Identities=14% Similarity=0.208 Sum_probs=66.4
Q ss_pred HHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCch
Q 010627 278 MIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDYG 357 (505)
Q Consensus 278 Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~ 357 (505)
+...|+.+|.|+++- .|..+....+...-..|++-++.... .| | ..+++...+++++....++-.
T Consensus 190 LA~~a~~~G~~~~Vv-----------vP~~~s~~K~~~ira~GAeVi~v~~~--~~-~-~~a~~~A~ela~~~~g~~~~~ 254 (429)
T PLN03013 190 LAFIAASRGYRLILT-----------MPASMSMERRVLLKAFGAELVLTDPA--KG-M-TGAVQKAEEILKNTPDAYMLQ 254 (429)
T ss_pred HHHHHHHcCCCEEEE-----------ECCCCcHHHHHHHHHcCCEEEEECCC--CC-h-HHHHHHHHHHHhhcCCeEeCC
Confidence 445889999999763 34444455556666789998776332 12 1 245555555554321111101
Q ss_pred hhHHhhhhCCCCCCCchhhHHHHHHHHHHhc--CCcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 010627 358 DVFKRVMQHSPVPMSPLESLASSAVRTANSA--RATLILVLTRGGSTAKLVAK----YRPGMPILSV 418 (505)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~--~a~~Ivv~T~sG~ta~~ls~----~RP~~pIiav 418 (505)
+ |. . +..+..-...-+.++.+++ +.+++|+..-+|.|.--+++ .+|.+.|+++
T Consensus 255 q-y~-----N--p~n~~ah~~ttg~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigV 313 (429)
T PLN03013 255 Q-FD-----N--PANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGV 313 (429)
T ss_pred C-CC-----C--HHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEE
Confidence 0 10 0 1111000112234455555 47999999999977655444 4799999999
No 352
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=44.40 E-value=81 Score=30.70 Aligned_cols=67 Identities=13% Similarity=0.168 Sum_probs=46.3
Q ss_pred HHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHc-CCCeEEeh
Q 010627 216 LVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQ-GKPVVTAT 293 (505)
Q Consensus 216 v~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~-gkpvi~AT 293 (505)
++.+++.+.+.+..+.+-+.-|.... +|++++++-.|.|+-+-. -+.....+...|.++ ++|++.++
T Consensus 83 a~~a~~~l~~lnp~v~v~~~~~~i~~-~~~~~~~~~~DvVI~a~D----------~~~~r~~l~~~~~~~~~~p~I~~~ 150 (212)
T PRK08644 83 VEALKENLLEINPFVEIEAHNEKIDE-DNIEELFKDCDIVVEAFD----------NAETKAMLVETVLEHPGKKLVAAS 150 (212)
T ss_pred HHHHHHHHHHHCCCCEEEEEeeecCH-HHHHHHHcCCCEEEECCC----------CHHHHHHHHHHHHHhCCCCEEEee
Confidence 34556666666777777666555443 577888887888776621 223556788999998 99999874
No 353
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=44.38 E-value=3.1e+02 Score=26.75 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=30.0
Q ss_pred HHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHc-CCceeeecccCCCCCCHHHH
Q 010627 283 NIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLD-GTDCVMLSGETAAGAYPEVA 339 (505)
Q Consensus 283 ~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~-G~D~imLs~Eta~G~yP~~~ 339 (505)
...+.|++.+.-+- +. .|+..+... |+|++|++.---.|.+..+-
T Consensus 190 ~~~~~pvia~GGi~---------~~---~di~~~l~~~g~dgv~vg~al~~~~~~~~~ 235 (243)
T cd04731 190 SAVNIPVIASGGAG---------KP---EHFVEAFEEGGADAALAASIFHFGEYTIAE 235 (243)
T ss_pred hhCCCCEEEeCCCC---------CH---HHHHHHHHhCCCCEEEEeHHHHcCCCCHHH
Confidence 34689999866533 23 345555554 99999997666677776554
No 354
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=44.24 E-value=3.9e+02 Score=27.83 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=40.7
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHH
Q 010627 14 KPKTKIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVN 69 (505)
Q Consensus 14 ~r~tkIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~ 69 (505)
.+++|+|+.+- +..+.+.--+-++.|.+..-|+- .++++.++..+.++++..+
T Consensus 143 ~e~~kliA~V~-saeEA~vA~eTLE~GaDgVll~~--~d~~eIk~~~~~~~e~~~E 195 (376)
T COG1465 143 HEKVKLIAGVK-SAEEARVALETLEKGADGVLLDS--DDPEEIKKTAEVVEEAESE 195 (376)
T ss_pred ccceEEEEEec-cHHHHHHHHHHHhccCceEEeCC--CCHHHHHHHHHHHHHhccc
Confidence 37899999874 33445566678899999987764 4899999999988888743
No 355
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=44.21 E-value=49 Score=32.77 Aligned_cols=176 Identities=18% Similarity=0.200 Sum_probs=89.1
Q ss_pred HHHhcHHHHHhc-CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHH
Q 010627 240 EGVANFDDILAN-SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVL 318 (505)
Q Consensus 240 ~av~nldeI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~ 318 (505)
...+.++.+.+. .|+|||| |=+++.- + --..++++.+++.+|+++ .|.. .+.+.
T Consensus 15 ~~~~~~~~~~~~gtdai~vG-GS~~vt~--~----~~~~~v~~ik~~~lPvil------------fp~~------~~~i~ 69 (223)
T TIGR01768 15 EADEIAKAAAESGTDAILIG-GSQGVTY--E----KTDTLIEALRRYGLPIIL------------FPSN------PTNVS 69 (223)
T ss_pred ccHHHHHHHHhcCCCEEEEc-CCCcccH--H----HHHHHHHHHhccCCCEEE------------eCCC------ccccC
Confidence 345566777765 6999998 4444321 2 334556667778899996 3433 23455
Q ss_pred cCCceeeecc------cCCCCCCHHHHHHHHHHHHHH--Hhccc--CchhhHHhhhhCCCCCCCchhhHHHHHHHHHHhc
Q 010627 319 DGTDCVMLSG------ETAAGAYPEVAVRTMAQICVE--AESTL--DYGDVFKRVMQHSPVPMSPLESLASSAVRTANSA 388 (505)
Q Consensus 319 ~G~D~imLs~------Eta~G~yP~~~V~~m~~i~~~--aE~~~--~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~ 388 (505)
.|+|++++-. ...+-....+++..+.+...+ .|.|+ +...--.+...-.+.|.+..+ ++..+.-+++=+
T Consensus 70 ~~aDa~l~~svlNs~~~~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~~~-~aa~~~lA~~~~ 148 (223)
T TIGR01768 70 RDADALFFPSVLNSDDPYWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPGGAAARVTKAKPIPYDKED-LAAYAAMAEEML 148 (223)
T ss_pred cCCCEEEEEEeecCCCchHHHhHHHHHHHHHhhhcceecceEEEEECCCcceeecccccccCCCcHH-HHHHHHHHHHHc
Confidence 7899998732 122222234555555444311 11121 111000111112223344444 444444444547
Q ss_pred CCcEEEEEcCCch-------HHHHHHhhCCCCcEEEEeecccccCCCCcCCCChhhhhccccccccEEEEeC
Q 010627 389 RATLILVLTRGGS-------TAKLVAKYRPGMPILSVVVPEIKTDNFDWSCSNEAPARHSLIFRGLVPVLYA 453 (505)
Q Consensus 389 ~a~~Ivv~T~sG~-------ta~~ls~~RP~~pIiav~~p~~~~t~~~~~~~~~~~aR~L~L~~GV~P~l~~ 453 (505)
+-+.+.+--.||. ..+.+.+.-...|++.. - +.++...++++. ..|.--+.+.
T Consensus 149 g~~~vYlE~gs~~g~~v~~e~i~~v~~~~~~~pl~vG-------G----GIrs~e~a~~l~-~aGAD~VVVG 208 (223)
T TIGR01768 149 GMPIIYLEAGSGAPEPVPPELVAEVKKVLDKARLFVG-------G----GIRSVEKAREMA-EAGADTIVTG 208 (223)
T ss_pred CCcEEEEEecCCCCCCcCHHHHHHHHHHcCCCCEEEe-------c----CCCCHHHHHHHH-HcCCCEEEEC
Confidence 8886666544333 23445555457888554 2 236677777654 3355544443
No 356
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=44.16 E-value=3.3e+02 Score=27.00 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=29.2
Q ss_pred HHHHHhcCCcEEEEEcC-CchHHHHHHhhCCCCcEEEEee
Q 010627 382 VRTANSARATLILVLTR-GGSTAKLVAKYRPGMPILSVVV 420 (505)
Q Consensus 382 v~~a~~~~a~~Ivv~T~-sG~ta~~ls~~RP~~pIiav~~ 420 (505)
.+.+.+.+|+++++.+. +....+.+++. +..|++...+
T Consensus 166 a~ay~~AGAD~v~v~~~~~~~~~~~~~~~-~~~Pl~~~~~ 204 (243)
T cd00377 166 AKAYAEAGADGIFVEGLKDPEEIRAFAEA-PDVPLNVNMT 204 (243)
T ss_pred HHHHHHcCCCEEEeCCCCCHHHHHHHHhc-CCCCEEEEec
Confidence 45567889999999876 56667778776 6699999844
No 357
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=43.80 E-value=55 Score=36.02 Aligned_cols=50 Identities=18% Similarity=0.355 Sum_probs=41.4
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHH
Q 010627 16 KTKIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRT 65 (505)
Q Consensus 16 ~tkIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~ 65 (505)
+.++-+.+|+.-.+.+..+.|+++|++++-++-+||..+...+.++.+|+
T Consensus 216 ~l~V~aai~~~~~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 216 RLRVGAAVGVGADNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred CEEEEeecccCcchHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHh
Confidence 45566677765567899999999999999999999999887777777776
No 358
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=43.77 E-value=1.2e+02 Score=31.39 Aligned_cols=62 Identities=13% Similarity=0.214 Sum_probs=41.1
Q ss_pred CeEEEEecCCCCCCH----HHHHHHHHhCCcEEEEecCCCC-----HHHHHHHHHHHHHHHHHcCCeeEEEEec
Q 010627 16 KTKIVCTLGPASRSV----PMIEKLLKAGMNVARFNFSHGS-----HEYHQETLNNLRTAMVNTGILCAVMLDT 80 (505)
Q Consensus 16 ~tkIi~TiGp~~~~~----~~i~~li~~G~~~~RlN~shg~-----~~~~~~~i~~ir~~~~~~~~~v~i~~Dl 80 (505)
+...-+|+|....++ +..+++.++|.+.+.+...|+. .+.-.++++.+|++ .+.-+.+++|.
T Consensus 126 ~v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~---~g~~~~l~vDa 196 (357)
T cd03316 126 RVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREA---VGPDVDLMVDA 196 (357)
T ss_pred ceeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHh---hCCCCEEEEEC
Confidence 445556776654233 3556677899999999999987 66666777777764 33334456655
No 359
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=43.74 E-value=52 Score=28.04 Aligned_cols=43 Identities=21% Similarity=0.189 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHhcCCcEEEEEcCC---------chHHHHHHhhCCCCcEEEE
Q 010627 376 SLASSAVRTANSARATLILVLTRG---------GSTAKLVAKYRPGMPILSV 418 (505)
Q Consensus 376 ~ia~~av~~a~~~~a~~Ivv~T~s---------G~ta~~ls~~RP~~pIiav 418 (505)
.++...++.+.+.+++.||+-++. |+++..+.++-|+|||+.+
T Consensus 72 ~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 72 DVAEAIVEFAREHNVTQIVVGKSRRSRWRELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCCCchHHHHhcccHHHHHHHhCCCCeEEEe
Confidence 356777778899999999988872 6889999999889999876
No 360
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=43.40 E-value=1.4e+02 Score=30.55 Aligned_cols=97 Identities=9% Similarity=0.106 Sum_probs=56.4
Q ss_pred HHHHHhcccccCCCEEEEc------CCCChhHHHHHHH-HHhccCCCceEEEEecCHHHHhcHHHHHhc-----CCeeEE
Q 010627 190 KEDILKWGIPNQIDMIALS------FVRKGSDLVGVRK-LLGGHAKNILLMSKVENQEGVANFDDILAN-----SDAFMV 257 (505)
Q Consensus 190 ~~di~~~al~~g~d~V~~s------fV~sa~dv~~v~~-~l~~~~~~~~IiakIEt~~av~nldeI~~~-----sDgImI 257 (505)
.+.+.++.++.|+|+|.+. +-=|.++-+++-+ ..+..+.++.|++-+-+ +.+..-+.++. +|++|+
T Consensus 28 l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~--~t~~ai~~a~~a~~~Gadav~~ 105 (296)
T TIGR03249 28 YRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG--NTSDAIEIARLAEKAGADGYLL 105 (296)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc--cHHHHHHHHHHHHHhCCCEEEE
Confidence 3344478899999999873 3344444444433 44444567889998842 34433334432 499998
Q ss_pred ecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010627 258 ARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTA 292 (505)
Q Consensus 258 aRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~A 292 (505)
-+--..- ...+.+...-+.|.+ +.+.|+++-
T Consensus 106 ~pP~y~~-~s~~~i~~~f~~v~~---a~~~pvilY 136 (296)
T TIGR03249 106 LPPYLIN-GEQEGLYAHVEAVCE---STDLGVIVY 136 (296)
T ss_pred CCCCCCC-CCHHHHHHHHHHHHh---ccCCCEEEE
Confidence 6643321 223455555555544 457898763
No 361
>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2.5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.
Probab=43.23 E-value=67 Score=26.67 Aligned_cols=41 Identities=15% Similarity=0.261 Sum_probs=30.1
Q ss_pred EEEecch-hhhcccCCCCEEEEeCCeEEEEEEEEeeeCCeEEEEEe
Q 010627 118 MICMSYK-KLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCE 162 (505)
Q Consensus 118 ~i~v~~~-~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~~~i~~~v~ 162 (505)
.+.+..| ..+..+.+|+.|-+|. ++|.|.+ +.++.+...+.
T Consensus 21 ~~~i~~~~~~~~~~~~g~SIavnG--vcLTV~~--~~~~~f~~~l~ 62 (85)
T PF00677_consen 21 RLRIEIPDKILSDLKIGGSIAVNG--VCLTVTD--INEDWFEVDLI 62 (85)
T ss_dssp EEEEEESTGGGGTG-TTSEEEETT--EEEEEEE--EETTEEEEEEE
T ss_pred EEEEEcCHHHHhhCccCcEEEECC--eeeEEEE--ecCCEEEEech
Confidence 4555555 7789999999999994 6789995 47888877654
No 362
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=43.11 E-value=62 Score=32.84 Aligned_cols=63 Identities=24% Similarity=0.311 Sum_probs=44.8
Q ss_pred hcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHH--HhcHHHHHhc-CCeeEEec
Q 010627 188 KDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEG--VANFDDILAN-SDAFMVAR 259 (505)
Q Consensus 188 ~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~a--v~nldeI~~~-sDgImIaR 259 (505)
.+.+++ ..+++.|+|+|.+..+. +++++++.+.+.. ++++.| .-| .+|+.++++. +|+|-++.
T Consensus 190 ~s~eea-~~A~~~gaDyI~ld~~~-~e~l~~~~~~~~~---~ipi~A----iGGI~~~ni~~~a~~Gvd~Iav~s 255 (268)
T cd01572 190 ETLEQL-KEALEAGADIIMLDNMS-PEELREAVALLKG---RVLLEA----SGGITLENIRAYAETGVDYISVGA 255 (268)
T ss_pred CCHHHH-HHHHHcCCCEEEECCcC-HHHHHHHHHHcCC---CCcEEE----ECCCCHHHHHHHHHcCCCEEEEEe
Confidence 345566 67788999999999874 7888887776632 344443 223 4788888887 79998864
No 363
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=43.08 E-value=32 Score=35.49 Aligned_cols=69 Identities=14% Similarity=0.256 Sum_probs=38.8
Q ss_pred HHHHHhcccccCCCEEEEcC------CCChhHHHHHHHHHhccCCCceEEEE--ecCHHHHhcHHHHHhc--CCeeEEec
Q 010627 190 KEDILKWGIPNQIDMIALSF------VRKGSDLVGVRKLLGGHAKNILLMSK--VENQEGVANFDDILAN--SDAFMVAR 259 (505)
Q Consensus 190 ~~di~~~al~~g~d~V~~sf------V~sa~dv~~v~~~l~~~~~~~~Iiak--IEt~~av~nldeI~~~--sDgImIaR 259 (505)
..++.+...+.|+++|.+.- -+...+...++++.... +++||+- |.|+ +.+.++++. +||+||||
T Consensus 140 ~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~--~ipvi~NGdI~s~---~d~~~~~~~tg~dgvMigR 214 (309)
T PF01207_consen 140 TIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEAL--PIPVIANGDIFSP---EDAERMLEQTGADGVMIGR 214 (309)
T ss_dssp HHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC---TSEEEEESS--SH---HHHHHHCCCH-SSEEEESH
T ss_pred HHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcc--cceeEEcCccCCH---HHHHHHHHhcCCcEEEEch
Confidence 33443788889999998753 12245566666554433 3788875 4443 333444444 79999999
Q ss_pred Cccc
Q 010627 260 GDLG 263 (505)
Q Consensus 260 gDLg 263 (505)
|=|+
T Consensus 215 gal~ 218 (309)
T PF01207_consen 215 GALG 218 (309)
T ss_dssp HHCC
T ss_pred hhhh
Confidence 8775
No 364
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=43.07 E-value=47 Score=32.78 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHH
Q 010627 310 ATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICV 348 (505)
Q Consensus 310 v~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~ 348 (505)
+.....++..|+|+++...--.-...|.++++.+.+.+.
T Consensus 190 ~~~~~~ai~~Gad~iVvGR~I~~a~dP~~~a~~i~~~i~ 228 (230)
T PRK00230 190 VMTPAQAIAAGSDYIVVGRPITQAADPAAAYEAILAEIA 228 (230)
T ss_pred HhCHHHHHHcCCCEEEECCcccCCCCHHHHHHHHHHHhh
Confidence 345778999999999998877778889999998877554
No 365
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=43.04 E-value=1.1e+02 Score=29.64 Aligned_cols=66 Identities=17% Similarity=0.225 Sum_probs=47.8
Q ss_pred cCCCeEEEEecC--CCCCC----HHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCCeeE-EEE
Q 010627 13 KKPKTKIVCTLG--PASRS----VPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGILCA-VML 78 (505)
Q Consensus 13 ~~r~tkIi~TiG--p~~~~----~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~~v~-i~~ 78 (505)
+..++|||.+-= ..+-+ .+.+++|.+.|.+++++-..-.+.++..++++..++..+..+.|+. +.+
T Consensus 110 ~~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~~~~~~~p~i~~~M 182 (224)
T PF01487_consen 110 RKGGTKIILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMANSPEDVLRLLRFTKEFREEPDIPVIAISM 182 (224)
T ss_dssp HHTTSEEEEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-SSHHHHHHHHHHHHHHHHHTSSEEEEEEE
T ss_pred hhCCCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCHHHHHHHHHHHHHHhhccCCcEEEEEc
Confidence 347899998863 22222 3667888999999999999999999999998888888777677754 444
No 366
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=42.86 E-value=62 Score=27.01 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=30.1
Q ss_pred chhhhcccCCCCEEEEeCCeEEEEEEEEeeeCCeEEEEEeeCcee
Q 010627 123 YKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAML 167 (505)
Q Consensus 123 ~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~~~i~~~v~~gG~l 167 (505)
..++...+++||+|..-.|-. -+|.+ ++++.+..++-.|..+
T Consensus 31 ~~~m~~~L~~Gd~VvT~gGi~-G~V~~--i~d~~v~vei~~g~~i 72 (84)
T TIGR00739 31 HKKLIESLKKGDKVLTIGGII-GTVTK--IAENTIVIELNDNTEI 72 (84)
T ss_pred HHHHHHhCCCCCEEEECCCeE-EEEEE--EeCCEEEEEECCCeEE
Confidence 357888999999999997665 66664 4677777666554444
No 367
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=42.82 E-value=3.9e+02 Score=28.02 Aligned_cols=114 Identities=9% Similarity=0.005 Sum_probs=67.1
Q ss_pred HHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCch-
Q 010627 191 EDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIE- 269 (505)
Q Consensus 191 ~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~- 269 (505)
+.+ +.+++.++.+|.++|- ++.++++++ +. .++++..+-|..-...+.+ .-+|+|++-=.+=|-+.|..
T Consensus 73 ~~l-~vi~e~~v~~V~~~~G-~P~~~~~lk----~~--Gi~v~~~v~s~~~A~~a~~--~GaD~vVaqG~EAGGH~G~~~ 142 (320)
T cd04743 73 AQL-AVVRAIKPTFALIAGG-RPDQARALE----AI--GISTYLHVPSPGLLKQFLE--NGARKFIFEGRECGGHVGPRS 142 (320)
T ss_pred HHH-HHHHhcCCcEEEEcCC-ChHHHHHHH----HC--CCEEEEEeCCHHHHHHHHH--cCCCEEEEecCcCcCCCCCCC
Confidence 355 7789999999998874 455554443 33 5789998887644433222 23799998333333333311
Q ss_pred hHHHHHHHHHHHHHH-------cCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCC--------ceeeec
Q 010627 270 KIFLAQKVMIYKCNI-------QGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGT--------DCVMLS 327 (505)
Q Consensus 270 ~v~~~qk~Ii~~~~~-------~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~--------D~imLs 327 (505)
-+..+ ..++.+... ...|||.|.-+-+ -..++-+...|+ +++.+.
T Consensus 143 t~~L~-~~v~~~l~~~~~~~~~~~iPViAAGGI~d------------gr~~aaalaLGA~~~~~Ga~~GV~mG 202 (320)
T cd04743 143 SFVLW-ESAIDALLAANGPDKAGKIHLLFAGGIHD------------ERSAAMVSALAAPLAERGAKVGVLMG 202 (320)
T ss_pred chhhH-HHHHHHHHHhhcccccCCccEEEEcCCCC------------HHHHHHHHHcCCcccccccccEEEEc
Confidence 11122 233333221 2699999887653 345677777887 788873
No 368
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=42.72 E-value=55 Score=33.15 Aligned_cols=64 Identities=22% Similarity=0.293 Sum_probs=44.8
Q ss_pred hcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHH--HhcHHHHHhc-CCeeEEe
Q 010627 188 KDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEG--VANFDDILAN-SDAFMVA 258 (505)
Q Consensus 188 ~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~a--v~nldeI~~~-sDgImIa 258 (505)
.+.+++ ..+++.|+|+|.+-.+ ++++++++.+++... .++++.| --| .+|+.++++. +|+|-++
T Consensus 189 ~t~eea-~~A~~~gaD~I~ld~~-~~e~l~~~v~~i~~~-~~i~i~a----sGGIt~~ni~~~a~~Gad~Isvg 255 (269)
T cd01568 189 ETLEEA-EEALEAGADIIMLDNM-SPEELKEAVKLLKGL-PRVLLEA----SGGITLENIRAYAETGVDVISTG 255 (269)
T ss_pred CCHHHH-HHHHHcCCCEEEECCC-CHHHHHHHHHHhccC-CCeEEEE----ECCCCHHHHHHHHHcCCCEEEEc
Confidence 345566 6678889999999775 568888888877543 3444333 223 4788888887 7999874
No 369
>PLN02565 cysteine synthase
Probab=42.69 E-value=3.1e+02 Score=28.43 Aligned_cols=118 Identities=12% Similarity=0.158 Sum_probs=70.0
Q ss_pred HHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCch
Q 010627 278 MIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDYG 357 (505)
Q Consensus 278 Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~ 357 (505)
+...|+.+|.|+.+- .|..+....+...-..|++.++...+ . ..-++++...++.++-...+ +-
T Consensus 82 lA~~a~~~G~~~~iv-----------vp~~~~~~k~~~i~~~GA~V~~~~~~--~--~~~~~~~~a~~l~~~~~~~~-~~ 145 (322)
T PLN02565 82 LAFMAAAKGYKLIIT-----------MPASMSLERRIILLAFGAELVLTDPA--K--GMKGAVQKAEEILAKTPNSY-IL 145 (322)
T ss_pred HHHHHHHcCCeEEEE-----------eCCCCcHHHHHHHHHcCCEEEEeCCC--C--CcHHHHHHHHHHHHhCCCcE-ee
Confidence 445899999998753 46666666677778899998875332 1 22355666555554311111 11
Q ss_pred hhHHhhhhCCCCCCCchhhHHHHHHHHHHhc--CCcEEEEEcCCchHHHH----HHhhCCCCcEEEE
Q 010627 358 DVFKRVMQHSPVPMSPLESLASSAVRTANSA--RATLILVLTRGGSTAKL----VAKYRPGMPILSV 418 (505)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~--~a~~Ivv~T~sG~ta~~----ls~~RP~~pIiav 418 (505)
.-|. .+..+..-...-+.++..++ ..++||+..-+|.+.-- +..++|.+.|+++
T Consensus 146 ~q~~-------n~~n~~~~~~t~a~Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~V 205 (322)
T PLN02565 146 QQFE-------NPANPKIHYETTGPEIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGV 205 (322)
T ss_pred cccC-------CHhHHHHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 0011 01111001233345555665 37999999999988654 4455799999999
No 370
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=42.66 E-value=2.6e+02 Score=28.51 Aligned_cols=94 Identities=17% Similarity=0.110 Sum_probs=54.9
Q ss_pred HHHHhc-CCeeEEecCcc--cCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHH-HHHHcCC
Q 010627 246 DDILAN-SDAFMVARGDL--GMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVA-NAVLDGT 321 (505)
Q Consensus 246 deI~~~-sDgImIaRgDL--g~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~-nav~~G~ 321 (505)
+..++. .||+++. |=- +..+..++-..+.+..++.+. ...||+..+- ..+-.|....+ .|-..|+
T Consensus 28 ~~~~~~Gv~gi~v~-GstGE~~~Ls~~Er~~l~~~~~~~~~-g~~pvi~gv~---------~~~t~~ai~~a~~A~~~Ga 96 (294)
T TIGR02313 28 EFQIEGGSHAISVG-GTSGEPGSLTLEERKQAIENAIDQIA-GRIPFAPGTG---------ALNHDETLELTKFAEEAGA 96 (294)
T ss_pred HHHHHcCCCEEEEC-ccCcccccCCHHHHHHHHHHHHHHhC-CCCcEEEECC---------cchHHHHHHHHHHHHHcCC
Confidence 444443 6899984 211 123444555555555555442 3467775432 23334444333 3566799
Q ss_pred ceeeecccCCCCCCHHHHHHHHHHHHHHH
Q 010627 322 DCVMLSGETAAGAYPEVAVRTMAQICVEA 350 (505)
Q Consensus 322 D~imLs~Eta~G~yP~~~V~~m~~i~~~a 350 (505)
|++|+..=--...-+-+.++.-..|+.++
T Consensus 97 d~v~v~pP~y~~~~~~~l~~~f~~ia~a~ 125 (294)
T TIGR02313 97 DAAMVIVPYYNKPNQEALYDHFAEVADAV 125 (294)
T ss_pred CEEEEcCccCCCCCHHHHHHHHHHHHHhc
Confidence 99999765443333578888999998877
No 371
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=42.61 E-value=1.9e+02 Score=29.39 Aligned_cols=98 Identities=13% Similarity=0.101 Sum_probs=57.2
Q ss_pred HHHHHhcccccC-CCEEEEc------CCCChhHHHHHHH-HHhccCCCceEEEEec---CHHHHhcHHHHHhc-CCeeEE
Q 010627 190 KEDILKWGIPNQ-IDMIALS------FVRKGSDLVGVRK-LLGGHAKNILLMSKVE---NQEGVANFDDILAN-SDAFMV 257 (505)
Q Consensus 190 ~~di~~~al~~g-~d~V~~s------fV~sa~dv~~v~~-~l~~~~~~~~IiakIE---t~~av~nldeI~~~-sDgImI 257 (505)
.+.+.++.++.| +|+|++. +.=|.++-.++-+ ..+..+.++.|++.+- +.++++....-.+. +|++|+
T Consensus 23 ~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v 102 (290)
T TIGR00683 23 LRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSA 102 (290)
T ss_pred HHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 333337888999 9999776 4445555555544 4444455788999985 44555555443333 599999
Q ss_pred ecCcccCcCCchhHHHHHHHHHHHHHHc-CCCeEE
Q 010627 258 ARGDLGMEIPIEKIFLAQKVMIYKCNIQ-GKPVVT 291 (505)
Q Consensus 258 aRgDLg~e~~~~~v~~~qk~Ii~~~~~~-gkpvi~ 291 (505)
.+-..- ....+++...-+.+.+ +. +.|+++
T Consensus 103 ~~P~y~-~~~~~~i~~yf~~v~~---~~~~lpv~l 133 (290)
T TIGR00683 103 VTPFYY-KFSFPEIKHYYDTIIA---ETGGLNMIV 133 (290)
T ss_pred eCCcCC-CCCHHHHHHHHHHHHh---hCCCCCEEE
Confidence 654322 1223444444444443 34 578775
No 372
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=42.44 E-value=2.4e+02 Score=27.25 Aligned_cols=35 Identities=14% Similarity=0.184 Sum_probs=23.0
Q ss_pred HHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcC-Cceeeecc
Q 010627 282 CNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDG-TDCVMLSG 328 (505)
Q Consensus 282 ~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G-~D~imLs~ 328 (505)
++..+.|+|.+.-+ -+.. |+......| +|++|+..
T Consensus 186 ~~~~~ipvia~GGi---------~~~~---di~~~~~~g~~~gv~vg~ 221 (233)
T PRK00748 186 AAAVPIPVIASGGV---------SSLD---DIKALKGLGAVEGVIVGR 221 (233)
T ss_pred HHhCCCCEEEeCCC---------CCHH---HHHHHHHcCCccEEEEEH
Confidence 44557999986653 3344 455555567 99999963
No 373
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=42.39 E-value=39 Score=33.35 Aligned_cols=61 Identities=25% Similarity=0.392 Sum_probs=36.5
Q ss_pred hcHHHHHhcC--CeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcC
Q 010627 243 ANFDDILANS--DAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDG 320 (505)
Q Consensus 243 ~nldeI~~~s--DgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G 320 (505)
..+++++..+ |+|||| |=+++....+++..+.|+ .+. ..|++. .|... +.+..|
T Consensus 15 ~~~~~~~~~~gtdai~vG-GS~~v~~~~~~~~~~ik~----~~~-~~Pvil------------fp~~~------~~i~~~ 70 (219)
T cd02812 15 EEIAKLAEESGTDAIMVG-GSDGVSSTLDNVVRLIKR----IRR-PVPVIL------------FPSNP------EAVSPG 70 (219)
T ss_pred HHHHHHHHhcCCCEEEEC-CccchhhhHHHHHHHHHH----hcC-CCCEEE------------eCCCc------cccCcC
Confidence 3466777644 999999 666554122233222222 222 699986 46654 344689
Q ss_pred Cceeeec
Q 010627 321 TDCVMLS 327 (505)
Q Consensus 321 ~D~imLs 327 (505)
+|++++.
T Consensus 71 aDa~l~~ 77 (219)
T cd02812 71 ADAYLFP 77 (219)
T ss_pred CCEEEEE
Confidence 9999873
No 374
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=42.29 E-value=58 Score=33.89 Aligned_cols=70 Identities=16% Similarity=0.192 Sum_probs=0.0
Q ss_pred ChhcHHHHHhcccccCCCEEEEcCCCCh------------------hHHHHHHHHHhccCCCceEEEE--ecCHHHHhcH
Q 010627 186 TEKDKEDILKWGIPNQIDMIALSFVRKG------------------SDLVGVRKLLGGHAKNILLMSK--VENQEGVANF 245 (505)
Q Consensus 186 te~D~~di~~~al~~g~d~V~~sfV~sa------------------~dv~~v~~~l~~~~~~~~Iiak--IEt~~av~nl 245 (505)
+..+..++.+.+.+.|+|.|.+. -|++ +.+.++++.+ .+++||+- |.|.+ .+
T Consensus 139 ~~~~~~~~~~~l~~~G~~~itvH-gRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~----~~ipVi~NGdI~s~~---da 210 (318)
T TIGR00742 139 SYEFLCDFVEIVSGKGCQNFIVH-ARKAWLSGLSPKENREIPPLRYERVYQLKKDF----PHLTIEINGGIKNSE---QI 210 (318)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEe-CCchhhcCCCccccccCCchhHHHHHHHHHhC----CCCcEEEECCcCCHH---HH
Q ss_pred HHHHhcCCeeEEecCccc
Q 010627 246 DDILANSDAFMVARGDLG 263 (505)
Q Consensus 246 deI~~~sDgImIaRgDLg 263 (505)
.+.++-+||+|||||=|+
T Consensus 211 ~~~l~g~dgVMigRgal~ 228 (318)
T TIGR00742 211 KQHLSHVDGVMVGREAYE 228 (318)
T ss_pred HHHHhCCCEEEECHHHHh
No 375
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=42.24 E-value=2e+02 Score=24.92 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=30.8
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHH
Q 010627 16 KTKIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHE 54 (505)
Q Consensus 16 ~tkIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~ 54 (505)
..++..+..+...+.+.++.|.++|++.+++++...+.+
T Consensus 76 ~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~ 114 (166)
T PF04055_consen 76 GIRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEE 114 (166)
T ss_dssp TEEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHH
T ss_pred ccceeeeccccchhHHHHHHHHhcCccEEecccccCCHH
Confidence 445555444444459999999999999999999999987
No 376
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=42.17 E-value=64 Score=35.37 Aligned_cols=107 Identities=12% Similarity=0.117 Sum_probs=56.6
Q ss_pred cHHHHHhcccccCCCEEEEcC------CCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHh---cCCeeEEec
Q 010627 189 DKEDILKWGIPNQIDMIALSF------VRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILA---NSDAFMVAR 259 (505)
Q Consensus 189 D~~di~~~al~~g~d~V~~sf------V~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~---~sDgImIaR 259 (505)
+.+++ +.+++.|++.|.+.. --+.+.-.++..++ -.+..+|+ |+ |+.+.+++.. .+||++||-
T Consensus 168 ~~~El-~~al~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~i---p~~~~~vs--eS--GI~t~~d~~~~~~~~davLiG~ 239 (454)
T PRK09427 168 NEEEL-ERAIALGAKVIGINNRNLRDLSIDLNRTRELAPLI---PADVIVIS--ES--GIYTHAQVRELSPFANGFLIGS 239 (454)
T ss_pred CHHHH-HHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhC---CCCcEEEE--eC--CCCCHHHHHHHHhcCCEEEECH
Confidence 45566 667777777777653 22233333333333 23444554 33 5554444432 379999987
Q ss_pred CcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeee
Q 010627 260 GDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 326 (505)
Q Consensus 260 gDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imL 326 (505)
.-+..+=|.+.+..+.. ..=|-|++- ...|+..+...|+|++=+
T Consensus 240 ~lm~~~d~~~~~~~L~~-------~~vKICGit----------------~~eda~~a~~~GaD~lGf 283 (454)
T PRK09427 240 SLMAEDDLELAVRKLIL-------GENKVCGLT----------------RPQDAKAAYDAGAVYGGL 283 (454)
T ss_pred HHcCCCCHHHHHHHHhc-------cccccCCCC----------------CHHHHHHHHhCCCCEEee
Confidence 66665544433333321 112344431 235666777788887655
No 377
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=41.67 E-value=3.1e+02 Score=25.91 Aligned_cols=120 Identities=13% Similarity=0.157 Sum_probs=63.1
Q ss_pred CChhcHHHHHhcccccCCCEEEEc--CCCChhHHHHHHHHHhccCCCceEEE--EecCHHHHhcHHHHHhc-CCeeEEec
Q 010627 185 LTEKDKEDILKWGIPNQIDMIALS--FVRKGSDLVGVRKLLGGHAKNILLMS--KVENQEGVANFDDILAN-SDAFMVAR 259 (505)
Q Consensus 185 lte~D~~di~~~al~~g~d~V~~s--fV~sa~dv~~v~~~l~~~~~~~~Iia--kIEt~~av~nldeI~~~-sDgImIaR 259 (505)
.+.++...+.+ +++.|+++|=+. + .++.-...++.+-+... +..+++ |+-++... .+++..+. +|.|.+-.
T Consensus 9 ~~~~~a~~~~~-~l~~~v~~iev~~~l-~~~~g~~~i~~l~~~~~-~~~i~~d~k~~d~~~~-~~~~~~~~Gad~i~vh~ 84 (206)
T TIGR03128 9 LDIEEALELAE-KVADYVDIIEIGTPL-IKNEGIEAVKEMKEAFP-DRKVLADLKTMDAGEY-EAEQAFAAGADIVTVLG 84 (206)
T ss_pred CCHHHHHHHHH-HcccCeeEEEeCCHH-HHHhCHHHHHHHHHHCC-CCEEEEEEeeccchHH-HHHHHHHcCCCEEEEec
Confidence 35555666634 448888888773 3 22222333333322211 223443 33344321 35554544 68777641
Q ss_pred CcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 260 GDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 260 gDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
+.+ +..-+++++.|+++|++++.+- . .|.. -..++..+...|+|.+.+.
T Consensus 85 -----~~~----~~~~~~~i~~~~~~g~~~~~~~-------~--~~~t-~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 85 -----VAD----DATIKGAVKAAKKHGKEVQVDL-------I--NVKD-KVKRAKELKELGADYIGVH 133 (206)
T ss_pred -----cCC----HHHHHHHHHHHHHcCCEEEEEe-------c--CCCC-hHHHHHHHHHcCCCEEEEc
Confidence 112 1233778899999999998741 0 1211 1234455666799988774
No 378
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=41.63 E-value=65 Score=28.35 Aligned_cols=40 Identities=13% Similarity=0.093 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCcEEEEEcCCch------HHHHHHhhCCCCcEEEE
Q 010627 378 ASSAVRTANSARATLILVLTRGGS------TAKLVAKYRPGMPILSV 418 (505)
Q Consensus 378 a~~av~~a~~~~a~~Ivv~T~sG~------ta~~ls~~RP~~pIiav 418 (505)
+...++.|.+.+++.||+-|+.+. +|..+.+. .+|||+.+
T Consensus 92 ~~~I~~~a~~~~~DLIV~Gs~~~~~~~lgSva~~v~~~-a~~pVLvv 137 (144)
T PRK15118 92 GQVLVDAIKKYDMDLVVCGHHQDFWSKLMSSARQLINT-VHVDMLIV 137 (144)
T ss_pred HHHHHHHHHHhCCCEEEEeCcccHHHHHHHHHHHHHhh-CCCCEEEe
Confidence 445566788999999999898432 34444444 45999998
No 379
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=41.55 E-value=1.6e+02 Score=29.38 Aligned_cols=87 Identities=10% Similarity=0.055 Sum_probs=54.5
Q ss_pred HHHHHhccCCCceEEEEecCHHHHhcHHHHHhc--CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhh
Q 010627 219 VRKLLGGHAKNILLMSKVENQEGVANFDDILAN--SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQML 296 (505)
Q Consensus 219 v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~--sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmL 296 (505)
+++.|.+...-...+.++=++..+ |++.. .|.|+|.- |=+......++. ++.+|+..|..+++
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~----e~~~~~g~D~v~iDl-----EH~~~~~~~~~~-~~~a~~~~g~~~~V----- 67 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAA----EICAGAGFDWLLIDG-----EHAPNDVRTILS-QLQALAPYPSSPVV----- 67 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHH----HHHHhcCCCEEEEec-----cCCCCCHHHHHH-HHHHHHhcCCCcEE-----
Confidence 555665422224466666666554 33433 59999952 322234444555 77888888887776
Q ss_pred HhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 297 ESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 297 eSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
.=|.+++ .++..++..|+|+||+-
T Consensus 68 ----Rv~~~~~---~~i~~~Ld~Ga~gIivP 91 (249)
T TIGR02311 68 ----RPAIGDP---VLIKQLLDIGAQTLLVP 91 (249)
T ss_pred ----ECCCCCH---HHHHHHhCCCCCEEEec
Confidence 3334443 37888999999999994
No 380
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=41.35 E-value=38 Score=35.13 Aligned_cols=76 Identities=17% Similarity=0.132 Sum_probs=46.2
Q ss_pred HHHHHHHHcCCCeEE--------ehhhhHhhhc-CCCCChHHHHHHHH-HHHcCCceeeecccCCCCC--CHHHHHHHHH
Q 010627 277 VMIYKCNIQGKPVVT--------ATQMLESMIK-SPRPTRAEATDVAN-AVLDGTDCVMLSGETAAGA--YPEVAVRTMA 344 (505)
Q Consensus 277 ~Ii~~~~~~gkpvi~--------ATqmLeSM~~-~~~ptraEv~Dv~n-av~~G~D~imLs~Eta~G~--yP~~~V~~m~ 344 (505)
..+.+|+++|.||+- ..+.++.|.. +..-...=+..+++ |...|+||.++.-||..+. ..-..+..++
T Consensus 46 ~widaAHrnGV~vLGTiife~~~~~~~~~~ll~~~~~g~~~~A~kLi~ia~~yGFDGw~iN~E~~~~~~~~~~~l~~F~~ 125 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGTIIFEWGGGAEWCEELLEKDEDGSFPYADKLIEIAKYYGFDGWLINIETPLSGPEDAENLIDFLK 125 (311)
T ss_dssp HHHHHHHHTT--EEEEEEEEEE--HHHHHHHT---TTS--HHHHHHHHHHHHHT--EEEEEEEESSTTGGGHHHHHHHHH
T ss_pred hhHHHHHhcCceEEEEEEecCCchHHHHHHHHcCCcccccHHHHHHHHHHHHcCCCceEEEecccCCchhHHHHHHHHHH
Confidence 357999999999851 2355666666 22222222222222 5678999999999999985 6777777777
Q ss_pred HHHHHHhc
Q 010627 345 QICVEAES 352 (505)
Q Consensus 345 ~i~~~aE~ 352 (505)
.+-+++.+
T Consensus 126 ~l~~~~~~ 133 (311)
T PF03644_consen 126 YLRKEAHE 133 (311)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhc
Confidence 77777776
No 381
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=41.27 E-value=2.4e+02 Score=27.09 Aligned_cols=102 Identities=12% Similarity=0.194 Sum_probs=57.1
Q ss_pred cHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEe---c----CHHHHhcHHHHHhcCCeeEEecCc
Q 010627 189 DKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKV---E----NQEGVANFDDILANSDAFMVARGD 261 (505)
Q Consensus 189 D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakI---E----t~~av~nldeI~~~sDgImIaRgD 261 (505)
|.+.+.+...+.|++.++++- .++++...+.+..+..+ ++....=| + ..+-++.+++.+.......| |.
T Consensus 16 ~~~~~~~~~~~~Gv~~~v~~~-~~~~~~~~~~~~~~~~~-~i~~~~GihP~~~~~~~~~~~~~l~~~l~~~~~~~i--GE 91 (252)
T TIGR00010 16 DVEEVIERAKAAGVTAVVAVG-TDLEDFLRALELAEKYP-NVYAAVGVHPLDVDDDTKEDIKELERLAAHPKVVAI--GE 91 (252)
T ss_pred CHHHHHHHHHHcCCCEEEEec-CCHHHHHHHHHHHHHCC-CEEEEEEeCcchhhcCCHHHHHHHHHHccCCCEEEE--Ee
Confidence 455554666778999887553 33677787777776554 44333322 1 12223334443332223334 66
Q ss_pred ccCcCCch-h----HHHHHHHHHHHHHHcCCCeEEehh
Q 010627 262 LGMEIPIE-K----IFLAQKVMIYKCNIQGKPVVTATQ 294 (505)
Q Consensus 262 Lg~e~~~~-~----v~~~qk~Ii~~~~~~gkpvi~ATq 294 (505)
.|.+.... . -..+-+..++.|++.|+||.+-|.
T Consensus 92 iGld~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~ 129 (252)
T TIGR00010 92 TGLDYYKADEYKRRQEEVFRAQLQLAEELNLPVIIHAR 129 (252)
T ss_pred cccCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEec
Confidence 77665321 1 113445667788999999998664
No 382
>PLN02826 dihydroorotate dehydrogenase
Probab=41.24 E-value=1.3e+02 Score=32.48 Aligned_cols=100 Identities=18% Similarity=0.104 Sum_probs=54.4
Q ss_pred CCCChhcHHHHHhcccccCCCEEEEcCCCC--hhH----------------------HHHHHHHHhccCCCceEEEE--e
Q 010627 183 PTLTEKDKEDILKWGIPNQIDMIALSFVRK--GSD----------------------LVGVRKLLGGHAKNILLMSK--V 236 (505)
Q Consensus 183 ~~lte~D~~di~~~al~~g~d~V~~sfV~s--a~d----------------------v~~v~~~l~~~~~~~~Iiak--I 236 (505)
|.+++.|..++.+.+.+.|+|+|+++.-.. +.| ++.++++-+..+.++.||+- |
T Consensus 271 Pdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI 350 (409)
T PLN02826 271 PDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGV 350 (409)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCC
Confidence 467878888887788999999999986211 111 11222222222334666654 5
Q ss_pred cCHHHHhcHHHHHhcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcC
Q 010627 237 ENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQG 286 (505)
Q Consensus 237 Et~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~g 286 (505)
.|.+- -++-|.+-++.+.++++=+- -|..-+..+.+.+.+...+.|
T Consensus 351 ~sg~D--a~e~i~AGAs~VQv~Ta~~~--~Gp~~i~~I~~eL~~~l~~~G 396 (409)
T PLN02826 351 SSGED--AYKKIRAGASLVQLYTAFAY--EGPALIPRIKAELAACLERDG 396 (409)
T ss_pred CCHHH--HHHHHHhCCCeeeecHHHHh--cCHHHHHHHHHHHHHHHHHcC
Confidence 55332 25555555788888764221 133334444444444444444
No 383
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=41.19 E-value=2e+02 Score=28.23 Aligned_cols=104 Identities=15% Similarity=0.164 Sum_probs=62.2
Q ss_pred CCCChHHHHHHHHHHHcCCceeeecccCC---CCCCHHHHHHHHHHHHHHHhcccCchhhHHhhhhCCCCCCCchhhHHH
Q 010627 303 PRPTRAEATDVANAVLDGTDCVMLSGETA---AGAYPEVAVRTMAQICVEAESTLDYGDVFKRVMQHSPVPMSPLESLAS 379 (505)
Q Consensus 303 ~~ptraEv~Dv~nav~~G~D~imLs~Eta---~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~ 379 (505)
..||..-+.++..|+.+|+|.+-+----. .|. --...+.|..|.+++.. ..-+-.++ .. ..+. +.+.
T Consensus 66 ~~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~-~~~v~~ei~~i~~~~~g-~~lKvIlE-----~~-~L~~-~ei~- 135 (211)
T TIGR00126 66 ASTTDVKLYETKEAIKYGADEVDMVINIGALKDGN-EEVVYDDIRAVVEACAG-VLLKVIIE-----TG-LLTD-EEIR- 135 (211)
T ss_pred CCcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCc-HHHHHHHHHHHHHHcCC-CeEEEEEe-----cC-CCCH-HHHH-
Confidence 36778888899999999999987644333 233 35677778887776642 11111111 11 1222 3454
Q ss_pred HHHHHHHhcCCcEEEEEcCCchH--------HHHHHhh-CCCCcEEEE
Q 010627 380 SAVRTANSARATLILVLTRGGST--------AKLVAKY-RPGMPILSV 418 (505)
Q Consensus 380 ~av~~a~~~~a~~Ivv~T~sG~t--------a~~ls~~-RP~~pIiav 418 (505)
.+++++...+|+ ++=|.||.. .+.+.+. +.++||-+-
T Consensus 136 ~a~~ia~eaGAD--fvKTsTGf~~~gat~~dv~~m~~~v~~~v~IKaa 181 (211)
T TIGR00126 136 KACEICIDAGAD--FVKTSTGFGAGGATVEDVRLMRNTVGDTIGVKAS 181 (211)
T ss_pred HHHHHHHHhCCC--EEEeCCCCCCCCCCHHHHHHHHHHhccCCeEEEe
Confidence 788899999999 555666643 2334343 345666665
No 384
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=41.13 E-value=93 Score=34.38 Aligned_cols=149 Identities=21% Similarity=0.224 Sum_probs=92.2
Q ss_pred eEEEEEeeCceecCCCCcccCCccccCCCCChhcHHHHHhcccccCCCEEEE---cCCCChhHHHHHHHHHhccCCCceE
Q 010627 156 LVKCRCENSAMLGERKNVNLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIAL---SFVRKGSDLVGVRKLLGGHAKNILL 232 (505)
Q Consensus 156 ~i~~~v~~gG~l~s~Kgvnlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~---sfV~sa~dv~~v~~~l~~~~~~~~I 232 (505)
.++-++-.|- ++..|=.+|+..+ +++ ...+ +...-|.|.|.= ..+-|.+|+.++-.-|++.+..-+|
T Consensus 237 ~ieIKiaQGA--KPGeGG~Lpg~KV-----~~~-IA~~--R~~~pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~~I 306 (485)
T COG0069 237 AIEIKIAQGA--KPGEGGQLPGEKV-----TPE-IAKT--RGSPPGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWAKI 306 (485)
T ss_pred eEEEEeccCC--CCCCCCCCCCccC-----CHH-HHHh--cCCCCCCCCcCCCCcccccCHHHHHHHHHHHHhcCCCCeE
Confidence 3444443332 3445556677665 332 2222 345567776642 2467889999998889888877779
Q ss_pred EEEecCHHHHhcHHH-HHhc-CCeeEEecCcccCcC-----------Cch-hHHHHHHHHHHHHHHcCCCeEEehhhhHh
Q 010627 233 MSKVENQEGVANFDD-ILAN-SDAFMVARGDLGMEI-----------PIE-KIFLAQKVMIYKCNIQGKPVVTATQMLES 298 (505)
Q Consensus 233 iakIEt~~av~nlde-I~~~-sDgImIaRgDLg~e~-----------~~~-~v~~~qk~Ii~~~~~~gkpvi~ATqmLeS 298 (505)
..|+=...++.-+.. .+++ +|.|.|.-.|=|.-. |++ -++.+++.+...-.+ .|+.+.+.--|-
T Consensus 307 ~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glR-d~v~l~~~Ggl~- 384 (485)
T COG0069 307 SVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLR-DKVKLIADGGLR- 384 (485)
T ss_pred EEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCc-ceeEEEecCCcc-
Confidence 999977777766665 4443 699999654444322 222 555666666555544 555554443332
Q ss_pred hhcCCCCChHHHHHHHHHHHcCCceeee
Q 010627 299 MIKSPRPTRAEATDVANAVLDGTDCVML 326 (505)
Q Consensus 299 M~~~~~ptraEv~Dv~nav~~G~D~imL 326 (505)
--.||+-|++.|+|.+-.
T Consensus 385 ----------Tg~DVaka~aLGAd~v~~ 402 (485)
T COG0069 385 ----------TGADVAKAAALGADAVGF 402 (485)
T ss_pred ----------CHHHHHHHHHhCcchhhh
Confidence 146999999999998654
No 385
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=41.10 E-value=2.1e+02 Score=29.81 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=36.1
Q ss_pred HhcHHHHHhc--CCeeEEecCcccCc----CCchhHH----HHHHHHHHHHHHc-CCCeEE-----ehhhhHhhhc
Q 010627 242 VANFDDILAN--SDAFMVARGDLGME----IPIEKIF----LAQKVMIYKCNIQ-GKPVVT-----ATQMLESMIK 301 (505)
Q Consensus 242 v~nldeI~~~--sDgImIaRgDLg~e----~~~~~v~----~~qk~Ii~~~~~~-gkpvi~-----ATqmLeSM~~ 301 (505)
++.++..++. +|+|.+. -|++.. ++.+... -..|+|++..+++ |+|++. .+.+|+.|..
T Consensus 158 i~y~~~qiea~Gad~I~i~-Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~g~piilH~cG~~~~~l~~~~e 232 (321)
T cd03309 158 LKLYERRIKHLEPDLLVYH-DDLGSQKGSFISPATFREFILPRMQRIFDFLRSNTSALIVHHSCGAAASLVPSMAE 232 (321)
T ss_pred HHHHHHHHHHhCCCEEEEe-CCCccccCCccCHHHHHHHHHHHHHHHHHHHHhccCCceEEEeCCCcHHHHHHHHH
Confidence 3344444444 7899985 344444 5554333 3447899999988 788876 3355665544
No 386
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=40.99 E-value=89 Score=33.32 Aligned_cols=96 Identities=10% Similarity=0.054 Sum_probs=56.8
Q ss_pred HHHHHhcccccCCCEEEEcCCC------ChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc----CCeeEEec
Q 010627 190 KEDILKWGIPNQIDMIALSFVR------KGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN----SDAFMVAR 259 (505)
Q Consensus 190 ~~di~~~al~~g~d~V~~sfV~------sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~----sDgImIaR 259 (505)
.+|. +.+.+.|+|+|.+|..- .+..+..+.+.....+.++.||+= -||.+-.+|+++ +|++||||
T Consensus 239 ~eda-~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~d----GGIr~g~Dv~KaLalGAd~V~igR 313 (367)
T TIGR02708 239 PEDA-DRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFD----SGVRRGQHVFKALASGADLVALGR 313 (367)
T ss_pred HHHH-HHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEee----CCcCCHHHHHHHHHcCCCEEEEcH
Confidence 4566 77789999999888632 222344454444333445777773 356666666553 79999999
Q ss_pred CcccC--cCCc---h-hHHHHHHHHHHHHHHcCCCeE
Q 010627 260 GDLGM--EIPI---E-KIFLAQKVMIYKCNIQGKPVV 290 (505)
Q Consensus 260 gDLg~--e~~~---~-~v~~~qk~Ii~~~~~~gkpvi 290 (505)
.=|-. .-|. + -+..++.++-......|..-+
T Consensus 314 ~~l~~la~~G~~gv~~~l~~l~~El~~~M~l~G~~~i 350 (367)
T TIGR02708 314 PVIYGLALGGSQGARQVFEYLNKELKRVMQLTGTQTI 350 (367)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 74432 1132 2 233555566666666665544
No 387
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=40.99 E-value=1.6e+02 Score=28.63 Aligned_cols=120 Identities=15% Similarity=0.144 Sum_probs=67.8
Q ss_pred cHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCc-----cc
Q 010627 189 DKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGD-----LG 263 (505)
Q Consensus 189 D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgD-----Lg 263 (505)
+.+.+.+.+-+.++|+|=+..-++++.+..+++.. +.++.-...+.....+.++.+....+|.+++.-+. =|
T Consensus 65 ~~~~i~~~~~~~~~d~vQLHg~e~~~~~~~l~~~~---~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGtG 141 (210)
T PRK01222 65 SDEEIDEIVETVPLDLLQLHGDETPEFCRQLKRRY---GLPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGTG 141 (210)
T ss_pred CHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhc---CCcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCCC
Confidence 34444355667899999999989999988888753 22222223444444455555555567999996432 12
Q ss_pred CcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHc-CCceeee--cccCCCCC
Q 010627 264 MEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLD-GTDCVML--SGETAAGA 334 (505)
Q Consensus 264 ~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~-G~D~imL--s~Eta~G~ 334 (505)
..+.+..+ . +...+|+++|.-+ .| ..|.+++.. +.+++=+ +-|++-|+
T Consensus 142 ~~~dw~~l---~-------~~~~~p~~LAGGi--------~p-----eNv~~ai~~~~p~gvDvsSgvE~~~G~ 192 (210)
T PRK01222 142 KTFDWSLL---P-------AGLAKPWILAGGL--------NP-----DNVAEAIRQVRPYGVDVSSGVESAPGI 192 (210)
T ss_pred CccchHHh---h-------hccCCCEEEECCC--------CH-----HHHHHHHHhcCCCEEEecCceECCCCC
Confidence 22333222 1 1237899998752 12 234555543 4445444 44766674
No 388
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=40.92 E-value=2.1e+02 Score=28.80 Aligned_cols=102 Identities=11% Similarity=0.088 Sum_probs=59.1
Q ss_pred hhcHHHHHhcccccCCCEEEEcC------CCChhHHHHH-HHHHhccCCCceEEEEecC---HHHHhcHHHHHhc-CCee
Q 010627 187 EKDKEDILKWGIPNQIDMIALSF------VRKGSDLVGV-RKLLGGHAKNILLMSKVEN---QEGVANFDDILAN-SDAF 255 (505)
Q Consensus 187 e~D~~di~~~al~~g~d~V~~sf------V~sa~dv~~v-~~~l~~~~~~~~IiakIEt---~~av~nldeI~~~-sDgI 255 (505)
+.-.+.+.++.++.|+|++++.= -=|.++=.++ +...+..+.++.|++-+-. .++++.+...-+. +|++
T Consensus 21 ~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v 100 (289)
T PF00701_consen 21 EDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAV 100 (289)
T ss_dssp HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEE
Confidence 33334444888999999998742 2233333333 3334445667899998854 5555555554443 5999
Q ss_pred EEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010627 256 MVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTA 292 (505)
Q Consensus 256 mIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~A 292 (505)
|+.+-.... ...+++.. ..-..|.+.+.|+++-
T Consensus 101 ~v~~P~~~~-~s~~~l~~---y~~~ia~~~~~pi~iY 133 (289)
T PF00701_consen 101 LVIPPYYFK-PSQEELID---YFRAIADATDLPIIIY 133 (289)
T ss_dssp EEEESTSSS-CCHHHHHH---HHHHHHHHSSSEEEEE
T ss_pred EEecccccc-chhhHHHH---HHHHHHhhcCCCEEEE
Confidence 987544432 33445444 4444456688998864
No 389
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=40.90 E-value=2e+02 Score=28.49 Aligned_cols=97 Identities=14% Similarity=0.094 Sum_probs=51.5
Q ss_pred CCCChhHHHHHHHHHhccCCCceEEEEecC---HHHHhcHHHHHhc-CCeeEEecCcccCcCCchhHHHHHHHHHHHHHH
Q 010627 209 FVRKGSDLVGVRKLLGGHAKNILLMSKVEN---QEGVANFDDILAN-SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNI 284 (505)
Q Consensus 209 fV~sa~dv~~v~~~l~~~~~~~~IiakIEt---~~av~nldeI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~ 284 (505)
.-++++.+.++-+.+++. +++|..||=. .+.++-...+.+. .|+|-+.-+.-+... ++ ..++..+
T Consensus 121 Ll~~p~~l~eiv~avr~~--~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~~~g~~a---d~-----~~I~~i~- 189 (233)
T cd02911 121 LLKDPERLSEFIKALKET--GVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAMDPGNHA---DL-----KKIRDIS- 189 (233)
T ss_pred HcCCHHHHHHHHHHHHhc--CCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCCCCCCC---cH-----HHHHHhc-
Confidence 345667777766666553 6789999831 1122212222222 587665322222111 22 2233333
Q ss_pred cCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecc
Q 010627 285 QGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG 328 (505)
Q Consensus 285 ~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~ 328 (505)
.++|+|-.. ..-|. .|...++..|+|+||+.-
T Consensus 190 ~~ipVIgnG---------gI~s~---eda~~~l~~GaD~VmiGR 221 (233)
T cd02911 190 TELFIIGNN---------SVTTI---ESAKEMFSYGADMVSVAR 221 (233)
T ss_pred CCCEEEEEC---------CcCCH---HHHHHHHHcCCCEEEEcC
Confidence 578988533 33333 456667778999999963
No 390
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=40.87 E-value=41 Score=33.02 Aligned_cols=50 Identities=16% Similarity=0.260 Sum_probs=35.1
Q ss_pred hcccccCCCEEEEcCCCChhH--------HHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHh
Q 010627 195 KWGIPNQIDMIALSFVRKGSD--------LVGVRKLLGGHAKNILLMSKVENQEGVANFDDILA 250 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~d--------v~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~ 250 (505)
..|.+.|++|| .|||...+| ++++.++++..+.+++|++ .+++|.+++.+
T Consensus 116 ~~Aa~aGa~yi-spyvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIla-----AS~r~~~~v~~ 173 (213)
T TIGR00875 116 LLAAKAGATYV-SPFVGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIA-----ASVRHPRHVLE 173 (213)
T ss_pred HHHHHcCCCEE-EeecchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEE-----eccCCHHHHHH
Confidence 34677899977 599988766 5566666666666777666 46666766665
No 391
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=40.80 E-value=1.5e+02 Score=30.56 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=27.9
Q ss_pred HHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHH
Q 010627 312 DVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQIC 347 (505)
Q Consensus 312 Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~ 347 (505)
|+..+...|+|++++.+.-.....|.+.++.+.+..
T Consensus 219 daa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai 254 (293)
T PRK04180 219 DAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEAT 254 (293)
T ss_pred HHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHH
Confidence 445666789999999877776778998888776654
No 392
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=40.67 E-value=45 Score=36.75 Aligned_cols=48 Identities=21% Similarity=0.307 Sum_probs=40.5
Q ss_pred EEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHH
Q 010627 18 KIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRT 65 (505)
Q Consensus 18 kIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~ 65 (505)
.+=+-+|.+-+..+.++.|+++|+++.=+..+||-.+...++++.||+
T Consensus 215 ~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~ 262 (475)
T TIGR01303 215 RIGAAVGINGDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRA 262 (475)
T ss_pred eehheeeeCccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHH
Confidence 344445666677899999999999999999999999888888888886
No 393
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=40.63 E-value=4.4e+02 Score=27.38 Aligned_cols=119 Identities=15% Similarity=0.216 Sum_probs=68.1
Q ss_pred HHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCchh
Q 010627 279 IYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDYGD 358 (505)
Q Consensus 279 i~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~ 358 (505)
...|+..|-++++- .|.........-.-..|+..++... .+.|-..+++-..+++.+-..+..+..
T Consensus 78 A~vaa~~Gy~~iiv-----------mP~~~S~er~~~l~a~GAevi~t~~---~~g~~~~a~~~a~el~~~~p~~~~~~~ 143 (300)
T COG0031 78 AMVAAAKGYRLIIV-----------MPETMSQERRKLLRALGAEVILTPG---APGNMKGAIERAKELAAEIPGYAVWLN 143 (300)
T ss_pred HHHHHHcCCcEEEE-----------eCCCCCHHHHHHHHHcCCEEEEcCC---CCCchHHHHHHHHHHHHhCCCceEchh
Confidence 45788999998763 2333333444555568999998876 334444566666666554433222211
Q ss_pred hHHhhhhCCCCCCCchhhHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHHhh----CCCCcEEEE
Q 010627 359 VFKRVMQHSPVPMSPLESLASSAVRTANSAR--ATLILVLTRGGSTAKLVAKY----RPGMPILSV 418 (505)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--a~~Ivv~T~sG~ta~~ls~~----RP~~pIiav 418 (505)
-|. + |.++..=.-..+-++-+..+ .+++|+-.-||-|.--++|| .|.+.|+++
T Consensus 144 Qf~-----N--paN~~aH~~tT~~EI~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~v 202 (300)
T COG0031 144 QFE-----N--PANPEAHYETTGPEIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAV 202 (300)
T ss_pred hcC-----C--CccHHHHHhhhHHHHHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEE
Confidence 111 1 12221001122333444443 89999999999886555554 799999999
No 394
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=40.62 E-value=83 Score=31.15 Aligned_cols=64 Identities=19% Similarity=0.349 Sum_probs=39.6
Q ss_pred HHHHHhcccccCCCEEEEcCCCC--hhHHHHHHHHHhccCCCceEEEE--ecCHHHHhcHHHHHhc-CCeeEEecC
Q 010627 190 KEDILKWGIPNQIDMIALSFVRK--GSDLVGVRKLLGGHAKNILLMSK--VENQEGVANFDDILAN-SDAFMVARG 260 (505)
Q Consensus 190 ~~di~~~al~~g~d~V~~sfV~s--a~dv~~v~~~l~~~~~~~~Iiak--IEt~~av~nldeI~~~-sDgImIaRg 260 (505)
...+.+...+.|+|+|.++--.. ..|...+++.- .+++||+- |.+.+-. .+.++. +|+|||||+
T Consensus 154 ~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~----~~ipVIgnGgI~s~eda---~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 154 DEELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS----TELFIIGNNSVTTIESA---KEMFSYGADMVSVARA 222 (233)
T ss_pred HHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc----CCCEEEEECCcCCHHHH---HHHHHcCCCEEEEcCC
Confidence 33443667789999887753332 33566555542 34677763 6655443 334434 899999999
No 395
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=40.51 E-value=2.9e+02 Score=28.40 Aligned_cols=95 Identities=13% Similarity=0.121 Sum_probs=56.4
Q ss_pred HHHHhc-CCeeEEe-c-CcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHH-HHHHcCC
Q 010627 246 DDILAN-SDAFMVA-R-GDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVA-NAVLDGT 321 (505)
Q Consensus 246 deI~~~-sDgImIa-R-gDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~-nav~~G~ 321 (505)
+..++. .|||++. - |+. ..+..++-..+.+..++.+ .-..||++-+- ..+-.|..+.+ .|-..|+
T Consensus 36 ~~li~~Gv~Gi~v~GstGE~-~~Lt~eEr~~v~~~~~~~~-~grvpvi~Gv~---------~~~t~~ai~~a~~A~~~Ga 104 (309)
T cd00952 36 ERLIAAGVDGILTMGTFGEC-ATLTWEEKQAFVATVVETV-AGRVPVFVGAT---------TLNTRDTIARTRALLDLGA 104 (309)
T ss_pred HHHHHcCCCEEEECcccccc-hhCCHHHHHHHHHHHHHHh-CCCCCEEEEec---------cCCHHHHHHHHHHHHHhCC
Confidence 343433 6999984 1 222 2345556555556666554 33478776432 22334554444 4667799
Q ss_pred ceeeecccCCCCCCHHHHHHHHHHHHHHHh
Q 010627 322 DCVMLSGETAAGAYPEVAVRTMAQICVEAE 351 (505)
Q Consensus 322 D~imLs~Eta~G~yP~~~V~~m~~i~~~aE 351 (505)
|++|+..=--...-+-+.++..+.|+..++
T Consensus 105 d~vlv~~P~y~~~~~~~l~~yf~~va~a~~ 134 (309)
T cd00952 105 DGTMLGRPMWLPLDVDTAVQFYRDVAEAVP 134 (309)
T ss_pred CEEEECCCcCCCCCHHHHHHHHHHHHHhCC
Confidence 999997653222234688888999998874
No 396
>PRK06815 hypothetical protein; Provisional
Probab=40.37 E-value=2.7e+02 Score=28.56 Aligned_cols=115 Identities=14% Similarity=0.210 Sum_probs=67.7
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCc
Q 010627 277 VMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDY 356 (505)
Q Consensus 277 ~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 356 (505)
-+..+|+..|.|+.+- .|..+.-..+...-..|++-+...++ ..++.+...+++++- ...|
T Consensus 82 alA~~a~~~G~~~~i~-----------~p~~~~~~k~~~~~~~GA~V~~~~~~------~~~~~~~a~~~~~~~--~~~~ 142 (317)
T PRK06815 82 GVALAAKLAGIPVTVY-----------APEQASAIKLDAIRALGAEVRLYGGD------ALNAELAARRAAEQQ--GKVY 142 (317)
T ss_pred HHHHHHHHhCCCEEEE-----------ECCCCCHHHHHHHHHCCCEEEEECCC------HHHHHHHHHHHHHhc--CCEE
Confidence 4667899999998763 13223234455566789998888543 345655555554331 1112
Q ss_pred hhhHHhhhhCCCCCCCchhhHHHHHHHHHHhc-CCcEEEEEcCCchHHHH----HHhhCCCCcEEEE
Q 010627 357 GDVFKRVMQHSPVPMSPLESLASSAVRTANSA-RATLILVLTRGGSTAKL----VAKYRPGMPILSV 418 (505)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~-~a~~Ivv~T~sG~ta~~----ls~~RP~~pIiav 418 (505)
-..|. .+ ...+.....+.++..++ ..+.||+..-+|.+.-- +..+.|...|+++
T Consensus 143 ~~~~~-----~~---~~~~g~~t~a~Ei~~q~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigV 201 (317)
T PRK06815 143 ISPYN-----DP---QVIAGQGTIGMELVEQQPDLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGC 201 (317)
T ss_pred ecCCC-----Ch---hhhcchhHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 11111 11 11122233455666665 46899999999987654 4445689999999
No 397
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.36 E-value=86 Score=32.07 Aligned_cols=63 Identities=11% Similarity=0.169 Sum_probs=46.5
Q ss_pred hcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEE--ecCHHHHhcHHHHHhc-CCeeEEec
Q 010627 188 KDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSK--VENQEGVANFDDILAN-SDAFMVAR 259 (505)
Q Consensus 188 ~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~Iiak--IEt~~av~nldeI~~~-sDgImIaR 259 (505)
.+.+.+ ..+++.|+|+|.+.. -++++++++.+.+. .++++.|- |. .+|+.+.++. +|+|-+|.
T Consensus 197 ~tleea-~eA~~~gaD~I~LD~-~~~e~l~~~v~~~~---~~i~leAsGGIt----~~ni~~~a~tGvD~Isvg~ 262 (277)
T PRK05742 197 ESLDEL-RQALAAGADIVMLDE-LSLDDMREAVRLTA---GRAKLEASGGIN----ESTLRVIAETGVDYISIGA 262 (277)
T ss_pred CCHHHH-HHHHHcCCCEEEECC-CCHHHHHHHHHHhC---CCCcEEEECCCC----HHHHHHHHHcCCCEEEECh
Confidence 446677 778899999999975 58889998887763 34555542 31 4788888887 79998864
No 398
>PRK09224 threonine dehydratase; Reviewed
Probab=40.32 E-value=4.2e+02 Score=29.38 Aligned_cols=116 Identities=16% Similarity=0.211 Sum_probs=68.7
Q ss_pred HHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccC
Q 010627 276 KVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLD 355 (505)
Q Consensus 276 k~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~ 355 (505)
.-+..+|+..|.|+.+- .|..+.-..+...-..|++-++.. ...-++.+...+++++ +.. .
T Consensus 81 ~avA~aa~~lGi~~~Iv-----------mP~~tp~~K~~~~r~~GA~Vi~~g------~~~~~a~~~a~~l~~~-~g~-~ 141 (504)
T PRK09224 81 QGVALSAARLGIKAVIV-----------MPVTTPDIKVDAVRAFGGEVVLHG------DSFDEAYAHAIELAEE-EGL-T 141 (504)
T ss_pred HHHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHhCCCEEEEEC------CCHHHHHHHHHHHHHh-cCC-E
Confidence 35667899999998652 122222334455667899876653 2345777776666544 222 1
Q ss_pred chhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcC--CcEEEEEcCCchHHHH----HHhhCCCCcEEEE
Q 010627 356 YGDVFKRVMQHSPVPMSPLESLASSAVRTANSAR--ATLILVLTRGGSTAKL----VAKYRPGMPILSV 418 (505)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--a~~Ivv~T~sG~ta~~----ls~~RP~~pIiav 418 (505)
|-.-|. . + .....-..-+.++..+++ .++||+..-+|.++-- +..++|...|+++
T Consensus 142 ~v~~f~-----~--~-~~i~G~gTi~~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigV 202 (504)
T PRK09224 142 FIHPFD-----D--P-DVIAGQGTIAMEILQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGV 202 (504)
T ss_pred EeCCCC-----C--c-HHHHhHHHHHHHHHHhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 211111 0 1 111222333466666664 6899999999977554 5567899999999
No 399
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=40.30 E-value=72 Score=34.33 Aligned_cols=85 Identities=13% Similarity=0.029 Sum_probs=59.7
Q ss_pred hcHHHHHhcccccCCCEEEEc-------CCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecC
Q 010627 188 KDKEDILKWGIPNQIDMIALS-------FVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARG 260 (505)
Q Consensus 188 ~D~~di~~~al~~g~d~V~~s-------fV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRg 260 (505)
.|...+ .+..+.|+.+|... -|-+.+++.+.|+.+.+.|- -++-||+. .+.+-|..+.+
T Consensus 11 ~d~v~l-~~irQ~G~~giV~al~~~p~gevW~~~~i~~~k~~ie~~GL---~~~vvEs~----------pv~e~Ik~g~~ 76 (394)
T TIGR00695 11 NDPVSL-EDVRQAGATGIVTALHHIPNGEVWEKEEIRKRKEYIESAGL---HWSVVESV----------PVHEAIKTGTG 76 (394)
T ss_pred CCcchH-HHHhhcCCcceeecCCCCCCCCCCCHHHHHHHHHHHHHcCC---eEEEEeCC----------CccHHHHcCCC
Confidence 444455 66677899998833 36788999999999988874 34446762 22234555533
Q ss_pred cccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010627 261 DLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTA 292 (505)
Q Consensus 261 DLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~A 292 (505)
+.++.....|+.|+..-++|+|+++-
T Consensus 77 ------~rd~~Ienyk~~irNla~~GI~vicY 102 (394)
T TIGR00695 77 ------NYGRWIENYKQTLRNLAQCGIKTVCY 102 (394)
T ss_pred ------cHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 24566677789999999999999863
No 400
>PRK08197 threonine synthase; Validated
Probab=40.21 E-value=2e+02 Score=30.69 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=30.6
Q ss_pred chhhHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhh--CCCCcEEEEeecc
Q 010627 373 PLESLASSAVRTANSARATLILVLTRGGSTAKLVAKY--RPGMPILSVVVPE 422 (505)
Q Consensus 373 ~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~ls~~--RP~~pIiav~~p~ 422 (505)
-.+..+..++..|.+.+.+.|++.| ||+++..+|.| +-..|.+.+ +|.
T Consensus 110 fKdRga~~~i~~a~~~g~~~vv~aS-sGN~g~alA~~aa~~G~~~~v~-vp~ 159 (394)
T PRK08197 110 FKARGLAVGVSRAKELGVKHLAMPT-NGNAGAAWAAYAARAGIRATIF-MPA 159 (394)
T ss_pred cHHhHHHHHHHHHHHcCCCEEEEeC-CcHHHHHHHHHHHHcCCcEEEE-EcC
Confidence 3455566666667777777666655 78887766655 345676666 553
No 401
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=40.15 E-value=2.9e+02 Score=27.08 Aligned_cols=135 Identities=13% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc-CCeeEEecCcccCcCCchh
Q 010627 192 DILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN-SDAFMVARGDLGMEIPIEK 270 (505)
Q Consensus 192 di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-sDgImIaRgDLg~e~~~~~ 270 (505)
++ +.|++.++|+|.++ ++-..+..+++++ +.+..|=. |...++.+.+..+. +|.|.+| -=+........
T Consensus 73 ~~-dlA~~~~AdGVHlG--q~D~~~~~ar~~~---~~~~iIG~---S~h~~eea~~A~~~g~DYv~~G-pifpT~tK~~~ 142 (211)
T COG0352 73 RV-DLALAVGADGVHLG--QDDMPLAEARELL---GPGLIIGL---STHDLEEALEAEELGADYVGLG-PIFPTSTKPDA 142 (211)
T ss_pred cH-HHHHhCCCCEEEcC--CcccchHHHHHhc---CCCCEEEe---ecCCHHHHHHHHhcCCCEEEEC-CcCCCCCCCCC
Q ss_pred HHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHH
Q 010627 271 IFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVE 349 (505)
Q Consensus 271 v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~ 349 (505)
-+.--..+-.......+|++. +=.-.|.++ .....-|+|+|-+.....-...|..+++-+.+...+
T Consensus 143 ~~~G~~~l~~~~~~~~iP~vA--------IGGi~~~nv-----~~v~~~Ga~gVAvvsai~~a~d~~~a~~~~~~~~~~ 208 (211)
T COG0352 143 PPLGLEGLREIRELVNIPVVA--------IGGINLENV-----PEVLEAGADGVAVVSAITSAADPAAAAKALRNALED 208 (211)
T ss_pred CccCHHHHHHHHHhCCCCEEE--------EcCCCHHHH-----HHHHHhCCCeEEehhHhhcCCCHHHHHHHHHHHHHh
No 402
>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function
Probab=40.13 E-value=77 Score=27.19 Aligned_cols=71 Identities=14% Similarity=0.276 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHcCCeeEEEEecCCCeeEEeecCCCCcEEecCCCEEEEEecC-----CCCCCccEEEecc--------hh
Q 010627 59 TLNNLRTAMVNTGILCAVMLDTKGPEIRTGFLKDGKPIQLKQGQEITISTDY-----TIKGDENMICMSY--------KK 125 (505)
Q Consensus 59 ~i~~ir~~~~~~~~~v~i~~Dl~GpkiR~g~~~~~~~i~l~~G~~v~l~~~~-----~~~~~~~~i~v~~--------~~ 125 (505)
.+..++.-..+...|..++ .|.+-...|+.++-++.+.|..+. ...+-...+.++. -.
T Consensus 2 ~ik~~a~~~~~~~~p~~i~---------~G~V~s~~PL~I~i~~~liL~~~~L~i~~~l~~~~~~~~~~~~~~~~~~~i~ 72 (100)
T PF10844_consen 2 LIKKIAEEAVEASNPVDIV---------IGTVVSVPPLKIKIDQKLILDKDFLIIPELLKDYTRDITIEHNSETDNITIT 72 (100)
T ss_pred HHHHHHHHHHhcCCCceeE---------EEEEEecccEEEEECCeEEEchHHEEeehhccceEEEEEEeccccccceeEE
Confidence 4555655555666665552 355443334555555544443321 1111122222222 22
Q ss_pred hhcccCCCCEEEE
Q 010627 126 LAVDVQPGSVILC 138 (505)
Q Consensus 126 ~~~~v~~Gd~I~i 138 (505)
+...+++||.|++
T Consensus 73 ~~~~Lk~GD~V~l 85 (100)
T PF10844_consen 73 FTDGLKVGDKVLL 85 (100)
T ss_pred EecCCcCCCEEEE
Confidence 4457889998876
No 403
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=40.13 E-value=2.6e+02 Score=27.72 Aligned_cols=115 Identities=10% Similarity=0.066 Sum_probs=66.3
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHh-cCCeeEE-e-cCcccCcCCchhH
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILA-NSDAFMV-A-RGDLGMEIPIEKI 271 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~-~sDgImI-a-RgDLg~e~~~~~v 271 (505)
+.+.++|+|++.+|-.. .++...+.+.+++.|-+.-++..=.| ..+.++.|++ ..|.+.+ + .|=.|.+-+..
T Consensus 98 ~~~~~aG~~giiipDl~-~ee~~~~~~~~~~~g~~~i~~i~P~T--~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~-- 172 (242)
T cd04724 98 RDAKEAGVDGLIIPDLP-PEEAEEFREAAKEYGLDLIFLVAPTT--PDERIKKIAELASGFIYYVSRTGVTGARTELP-- 172 (242)
T ss_pred HHHHHCCCcEEEECCCC-HHHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHhhCCCCEEEEeCCCCCCCccCCC--
Confidence 66678899999995542 47888888888887765444443344 3567888888 4454443 4 23344433321
Q ss_pred HHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 272 FLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 272 ~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
+.....+-+..+...+|+.+..- .=+.+ ++...... +|++...
T Consensus 173 ~~~~~~i~~lr~~~~~pI~vggG---------I~~~e---~~~~~~~~-ADgvVvG 215 (242)
T cd04724 173 DDLKELIKRIRKYTDLPIAVGFG---------ISTPE---QAAEVAKY-ADGVIVG 215 (242)
T ss_pred hhHHHHHHHHHhcCCCcEEEEcc---------CCCHH---HHHHHHcc-CCEEEEC
Confidence 22223333333334789887543 22233 33444445 8888874
No 404
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=40.11 E-value=2.2e+02 Score=30.52 Aligned_cols=47 Identities=23% Similarity=0.371 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhh--CCCCcEEEEeecc
Q 010627 374 LESLASSAVRTANSARATLILVLTRGGSTAKLVAKY--RPGMPILSVVVPE 422 (505)
Q Consensus 374 ~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~ls~~--RP~~pIiav~~p~ 422 (505)
.+.-|..++..+.+.+++.| +...||++++.+|.| +-..|.+.+ ||.
T Consensus 101 KdRga~~~i~~a~~~g~~~V-v~aSsGN~g~alA~~aa~~Gi~~~I~-vP~ 149 (398)
T TIGR03844 101 KELEALPTMQRLKERGGKTL-VVASAGNTGRAFAEVSAITGQPVILV-VPK 149 (398)
T ss_pred HHHHHHHHHHHHHHcCCCEE-EEECCCHHHHHHHHHHHHcCCcEEEE-ECC
Confidence 45556666666666676644 444568888877666 455777777 553
No 405
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=40.09 E-value=92 Score=32.01 Aligned_cols=54 Identities=17% Similarity=0.181 Sum_probs=42.4
Q ss_pred EEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCC
Q 010627 18 KIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGI 72 (505)
Q Consensus 18 kIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~ 72 (505)
.+..-+ .-+.+.+.+.+.+++|.+-.-+..||-..+++.+.-+.+-+.+...|.
T Consensus 79 PV~lHL-DHg~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv 132 (285)
T PRK07709 79 PVAIHL-DHGSSFEKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNV 132 (285)
T ss_pred cEEEEC-CCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 445444 334479999999999999999999999999877777777777766663
No 406
>PRK10812 putative DNAse; Provisional
Probab=40.00 E-value=1.5e+02 Score=29.97 Aligned_cols=100 Identities=20% Similarity=0.224 Sum_probs=61.5
Q ss_pred hcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhcc-------CCCceEEEEecCHHHHhcHHHHHhcCCeeEEecC
Q 010627 188 KDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGH-------AKNILLMSKVENQEGVANFDDILANSDAFMVARG 260 (505)
Q Consensus 188 ~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~-------~~~~~IiakIEt~~av~nldeI~~~sDgImIaRg 260 (505)
.|...+.+.+.+.|+..++.+- .+.++..++.++.... |-++.- +.....++.+.++++.. =++|=|
T Consensus 20 ~d~~~vl~~a~~~gv~~~~~~~-~~~~~~~~~~~l~~~~~~v~~~~GiHP~~---~~~~~~~~~l~~~~~~~--~vvaIG 93 (265)
T PRK10812 20 KDVDDVLAKAAARDVKFCLAVA-TTLPGYRHMRDLVGERDNVVFSCGVHPLN---QDEPYDVEELRRLAAEE--GVVAMG 93 (265)
T ss_pred cCHHHHHHHHHHcCCCEEEEeC-CCHHHHHHHHHHHhhCCCeEEEEEeCCCC---CCChhHHHHHHHHhcCC--CEEEEE
Confidence 4666665888899999887665 4677888777776543 112211 12234456666665433 344557
Q ss_pred cccCcCCch-hHHHHH----HHHHHHHHHcCCCeEEeh
Q 010627 261 DLGMEIPIE-KIFLAQ----KVMIYKCNIQGKPVVTAT 293 (505)
Q Consensus 261 DLg~e~~~~-~v~~~q----k~Ii~~~~~~gkpvi~AT 293 (505)
..|.+.... .-...| +..++.|++.|+|+++-+
T Consensus 94 EiGLD~~~~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~ 131 (265)
T PRK10812 94 ETGLDYYYTPETKVRQQESFRHHIQIGRELNKPVIVHT 131 (265)
T ss_pred eeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 788776421 123444 466778899999999854
No 407
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=39.77 E-value=3.6e+02 Score=27.65 Aligned_cols=94 Identities=17% Similarity=0.247 Sum_probs=55.5
Q ss_pred HHHHHHHHcCCceeeecccCC-CCCCHHHHHHHHHHHHHHHhcccCchhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcC
Q 010627 311 TDVANAVLDGTDCVMLSGETA-AGAYPEVAVRTMAQICVEAESTLDYGDVFKRVMQHSPVPMSPLESLASSAVRTANSAR 389 (505)
Q Consensus 311 ~Dv~nav~~G~D~imLs~Eta-~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~ 389 (505)
......+.+|||-|=+.+|++ -|.-|+..-+.+.++.-..+.. ......+. ..|+.-..+.+.|-+.+
T Consensus 42 ~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l----------~~~~~~~I-SIDT~~~~va~~AL~~G 110 (282)
T PRK11613 42 KHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAI----------AQRFEVWI-SVDTSKPEVIRESAKAG 110 (282)
T ss_pred HHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH----------HhcCCCeE-EEECCCHHHHHHHHHcC
Confidence 445557889999999999988 7777776666766655433321 10111121 12222333344444558
Q ss_pred CcEE---EEEcCCchHHHHHHhhCCCCcEEEE
Q 010627 390 ATLI---LVLTRGGSTAKLVAKYRPGMPILSV 418 (505)
Q Consensus 390 a~~I---vv~T~sG~ta~~ls~~RP~~pIiav 418 (505)
|+.| --++ .-..+..+++| .+|++.+
T Consensus 111 adiINDI~g~~-d~~~~~~~a~~--~~~vVlm 139 (282)
T PRK11613 111 AHIINDIRSLS-EPGALEAAAET--GLPVCLM 139 (282)
T ss_pred CCEEEECCCCC-CHHHHHHHHHc--CCCEEEE
Confidence 8854 2343 34567778777 5888888
No 408
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=39.34 E-value=4.2e+02 Score=26.75 Aligned_cols=153 Identities=18% Similarity=0.083 Sum_probs=90.7
Q ss_pred CCChhcHHHHHhcccccCCCEEEEcCC---------CChhHHHHHHHHHhccCCCceEEE--EecCHHH--------Hh-
Q 010627 184 TLTEKDKEDILKWGIPNQIDMIALSFV---------RKGSDLVGVRKLLGGHAKNILLMS--KVENQEG--------VA- 243 (505)
Q Consensus 184 ~lte~D~~di~~~al~~g~d~V~~sfV---------~sa~dv~~v~~~l~~~~~~~~Iia--kIEt~~a--------v~- 243 (505)
.++..++..+.....+.|+|.|=+-+= -+.++.+.++.+.+. ..+.++.+ .-.+.-+ .+
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~-~~~~~l~~~~r~~~~~~~~~~p~~~~~~ 95 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKA-MPNTPLQMLLRGQNLVGYRHYPDDVVEL 95 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHh-CCCCceehhcccccccCccCCCcHHHHH
Confidence 356677777756667789998855441 255555555544322 23333333 2111111 11
Q ss_pred cHHHHHhc-CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHH-HHcCC
Q 010627 244 NFDDILAN-SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANA-VLDGT 321 (505)
Q Consensus 244 nldeI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~na-v~~G~ 321 (505)
.++...+. .|.|-|. .+..++. --+..++.++++|+-+..+ .+|...+..+.+.+.+++.. ...|+
T Consensus 96 di~~~~~~g~~~iri~-------~~~~~~~-~~~~~i~~ak~~G~~v~~~----i~~~~~~~~~~~~~~~~~~~~~~~Ga 163 (275)
T cd07937 96 FVEKAAKNGIDIFRIF-------DALNDVR-NLEVAIKAVKKAGKHVEGA----ICYTGSPVHTLEYYVKLAKELEDMGA 163 (275)
T ss_pred HHHHHHHcCCCEEEEe-------ecCChHH-HHHHHHHHHHHCCCeEEEE----EEecCCCCCCHHHHHHHHHHHHHcCC
Confidence 12222222 3665553 2333332 3456778889999876542 13344567788888877764 56699
Q ss_pred ceeeecccCCCCCCHHHHHHHHHHHHHHH
Q 010627 322 DCVMLSGETAAGAYPEVAVRTMAQICVEA 350 (505)
Q Consensus 322 D~imLs~Eta~G~yP~~~V~~m~~i~~~a 350 (505)
|.|.| .+|.=.-.|.++-+.++.+.++.
T Consensus 164 ~~i~l-~DT~G~~~P~~v~~lv~~l~~~~ 191 (275)
T cd07937 164 DSICI-KDMAGLLTPYAAYELVKALKKEV 191 (275)
T ss_pred CEEEE-cCCCCCCCHHHHHHHHHHHHHhC
Confidence 99999 58888888999988888877554
No 409
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=39.26 E-value=4.6e+02 Score=27.20 Aligned_cols=129 Identities=12% Similarity=0.172 Sum_probs=66.1
Q ss_pred CCChhcHHHHH-------hcccccCCCEEEE-------------cCCCCh----------------hHHHHHHHHHhccC
Q 010627 184 TLTEKDKEDIL-------KWGIPNQIDMIAL-------------SFVRKG----------------SDLVGVRKLLGGHA 227 (505)
Q Consensus 184 ~lte~D~~di~-------~~al~~g~d~V~~-------------sfV~sa----------------~dv~~v~~~l~~~~ 227 (505)
.+|+.|.+.+. +.+.++|+|+|=+ |..+.. +-++++|+.+ |
T Consensus 138 ~mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~av---G 214 (338)
T cd04733 138 AMTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAV---G 214 (338)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHc---C
Confidence 46777766553 5778899999966 333321 2333344333 5
Q ss_pred CCceEEEEec---------C-HHHHhcHHHHHhc-CCeeEEecCcccCcC-------CchhHHHHHHHHHHHHH-HcCCC
Q 010627 228 KNILLMSKVE---------N-QEGVANFDDILAN-SDAFMVARGDLGMEI-------PIEKIFLAQKVMIYKCN-IQGKP 288 (505)
Q Consensus 228 ~~~~IiakIE---------t-~~av~nldeI~~~-sDgImIaRgDLg~e~-------~~~~v~~~qk~Ii~~~~-~~gkp 288 (505)
.+..|..+|= + .++++-++.+.+. .|.|-|..|-..-.. +...-+..+....+..+ ..+.|
T Consensus 215 ~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iP 294 (338)
T cd04733 215 PGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTP 294 (338)
T ss_pred CCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCC
Confidence 6778888883 1 2233333333332 466666544221000 00000111122222222 35899
Q ss_pred eEEehhhhHhhhcCCCCChHHHHHHHHHHHcC-Cceeeec
Q 010627 289 VVTATQMLESMIKSPRPTRAEATDVANAVLDG-TDCVMLS 327 (505)
Q Consensus 289 vi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G-~D~imLs 327 (505)
|+....+ - ...+...++.+| +|.|+++
T Consensus 295 Vi~~G~i---------~---t~~~a~~~l~~g~aD~V~lg 322 (338)
T cd04733 295 LMVTGGF---------R---TRAAMEQALASGAVDGIGLA 322 (338)
T ss_pred EEEeCCC---------C---CHHHHHHHHHcCCCCeeeeC
Confidence 9976543 1 224456777776 8999985
No 410
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=38.91 E-value=1e+02 Score=31.60 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=44.3
Q ss_pred EEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCC
Q 010627 18 KIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGI 72 (505)
Q Consensus 18 kIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~ 72 (505)
.++--+ --..+.+.+++.+++|.+..-+.-||-+.++..+..+.+++....+|.
T Consensus 76 pv~lhl-DH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv 129 (282)
T TIGR01859 76 PVALHL-DHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGV 129 (282)
T ss_pred eEEEEC-CCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 444443 333479999999999999999999999999999999999988887774
No 411
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=38.88 E-value=2.5e+02 Score=28.39 Aligned_cols=92 Identities=12% Similarity=-0.060 Sum_probs=49.9
Q ss_pred HHhcccccCCCEEEEc------CCCChhHHHHHHHHHhccCCCceEEEEec---CHHHHhcHHHHHhc-CCeeEEecCcc
Q 010627 193 ILKWGIPNQIDMIALS------FVRKGSDLVGVRKLLGGHAKNILLMSKVE---NQEGVANFDDILAN-SDAFMVARGDL 262 (505)
Q Consensus 193 i~~~al~~g~d~V~~s------fV~sa~dv~~v~~~l~~~~~~~~IiakIE---t~~av~nldeI~~~-sDgImIaRgDL 262 (505)
+.++.++.|+|+|++. +-=|.++-.++-+...+... .|++.+- +.++++-...-.+. +|++|+.+-..
T Consensus 25 li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~--~vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~~P~y 102 (279)
T cd00953 25 HCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITD--KVIFQVGSLNLEESIELARAAKSFGIYAIASLPPYY 102 (279)
T ss_pred HHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcC--CEEEEeCcCCHHHHHHHHHHHHHcCCCEEEEeCCcC
Confidence 3378888999999873 23344444444333322222 2777774 33444444333333 59999865443
Q ss_pred cCcCCchhHHHHHHHHHHHHHHcCCCeEE
Q 010627 263 GMEIPIEKIFLAQKVMIYKCNIQGKPVVT 291 (505)
Q Consensus 263 g~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ 291 (505)
-...+.+.+...-+.+.+ +.|+++
T Consensus 103 ~~~~~~~~i~~yf~~v~~-----~lpv~i 126 (279)
T cd00953 103 FPGIPEEWLIKYFTDISS-----PYPTFI 126 (279)
T ss_pred CCCCCHHHHHHHHHHHHh-----cCCEEE
Confidence 221223455555555555 688875
No 412
>PRK08639 threonine dehydratase; Validated
Probab=38.88 E-value=5e+02 Score=27.90 Aligned_cols=116 Identities=19% Similarity=0.286 Sum_probs=67.1
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCcee--eecccCCCCCCHHHHHHHHHHHHHHHhccc
Q 010627 277 VMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCV--MLSGETAAGAYPEVAVRTMAQICVEAESTL 354 (505)
Q Consensus 277 ~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~i--mLs~Eta~G~yP~~~V~~m~~i~~~aE~~~ 354 (505)
-+..+|+..|.|+.+- .|..+-...+...-..|++.+ .+. |...-++++.-.+++++ +..
T Consensus 87 alA~~a~~~G~~~~Iv-----------mP~~~~~~k~~~~r~~GA~vv~v~~~-----g~~~~~a~~~a~~~a~~-~g~- 148 (420)
T PRK08639 87 GVAYACRHLGIPGVIF-----------MPVTTPQQKIDQVRFFGGEFVEIVLV-----GDTFDDSAAAAQEYAEE-TGA- 148 (420)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCChHHHHHHHHHcCCCeeEEEEe-----CcCHHHHHHHHHHHHHh-cCC-
Confidence 5667899999998763 244433344556667799843 332 44456676666555443 221
Q ss_pred CchhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcC----CcEEEEEcCCchHHHHHH----hhCCCCcEEEE
Q 010627 355 DYGDVFKRVMQHSPVPMSPLESLASSAVRTANSAR----ATLILVLTRGGSTAKLVA----KYRPGMPILSV 418 (505)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~----a~~Ivv~T~sG~ta~~ls----~~RP~~pIiav 418 (505)
.|-.-|. .+ ...+.-..-+.++..+++ .++||+..-+|.++--++ .++|.+.|+++
T Consensus 149 ~~~~~~~-----~~---~~~~G~~tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigV 212 (420)
T PRK08639 149 TFIPPFD-----DP---DVIAGQGTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGV 212 (420)
T ss_pred cccCCCC-----Ch---hHhcchhHHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 1211111 00 011111222455556654 689999999998765544 44799999999
No 413
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=38.86 E-value=48 Score=32.83 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=47.5
Q ss_pred hcccccCCCEEEEcCCCC-----hhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHh-------cCCeeEEecCcc
Q 010627 195 KWGIPNQIDMIALSFVRK-----GSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILA-------NSDAFMVARGDL 262 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~s-----a~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~-------~sDgImIaRgDL 262 (505)
+...+.|++.+.+--+.. .-|...+++..+. .++++|+- -++.+++++.+ -+||+|+||+=+
T Consensus 153 ~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~--~~ipvias----GGi~s~~D~~~l~~~~~~GvdgV~igra~~ 226 (241)
T PRK14024 153 ERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCAR--TDAPVVAS----GGVSSLDDLRALAELVPLGVEGAIVGKALY 226 (241)
T ss_pred HHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhh--CCCCEEEe----CCCCCHHHHHHHhhhccCCccEEEEeHHHH
Confidence 556788999888876533 2345555554433 24677772 34555555543 269999999988
Q ss_pred cCcCCchhHHH
Q 010627 263 GMEIPIEKIFL 273 (505)
Q Consensus 263 g~e~~~~~v~~ 273 (505)
.-.+++++...
T Consensus 227 ~g~~~~~~~~~ 237 (241)
T PRK14024 227 AGAFTLPEALA 237 (241)
T ss_pred cCCCCHHHHHH
Confidence 88888776543
No 414
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=38.78 E-value=4.1e+02 Score=28.61 Aligned_cols=128 Identities=13% Similarity=0.193 Sum_probs=77.7
Q ss_pred cccCCCEEEEcCCCC-hh-------HHHH-HHHHHhccCCCceEEEE-----ecCHHHHhcHHHHHhcCCe--eEEecCc
Q 010627 198 IPNQIDMIALSFVRK-GS-------DLVG-VRKLLGGHAKNILLMSK-----VENQEGVANFDDILANSDA--FMVARGD 261 (505)
Q Consensus 198 l~~g~d~V~~sfV~s-a~-------dv~~-v~~~l~~~~~~~~Iiak-----IEt~~av~nldeI~~~sDg--ImIaRgD 261 (505)
.++|+|+|++-...+ ++ +..+ +++.+... ++.++-- -..++ -+++.+++..| .+|....
T Consensus 150 ~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av--~vPLIL~gsg~~~kD~e---VLeaaLe~~~G~kpLL~SAt 224 (389)
T TIGR00381 150 KEFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAV--DVPIVIGGSGNPEKDPL---VLEKAAEVAEGERCLLASAN 224 (389)
T ss_pred HHhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhC--CCCEEEeCCCCCcCCHH---HHHHHHHHhCCCCcEEEecC
Confidence 368999999998776 44 3433 44443332 3333221 23433 35667777655 6666433
Q ss_pred ccCcCCchhHHHHHHHHHHHHHHcCCCeEEeh----hhhHhhhcCCCCChHHHHHHHHHHHcCCc--eeeecccC-CCCC
Q 010627 262 LGMEIPIEKIFLAQKVMIYKCNIQGKPVVTAT----QMLESMIKSPRPTRAEATDVANAVLDGTD--CVMLSGET-AAGA 334 (505)
Q Consensus 262 Lg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~AT----qmLeSM~~~~~ptraEv~Dv~nav~~G~D--~imLs~Et-a~G~ 334 (505)
+-. -.+++.+.|+++|.|+++-+ .++.++.. .....|.. =|++.-=| +.|.
T Consensus 225 ~e~---------Ny~~ia~lAk~yg~~Vvv~s~~Din~ak~Ln~-------------kL~~~Gv~~eDIVlDP~t~alG~ 282 (389)
T TIGR00381 225 LDL---------DYEKIANAAKKYGHVVLSWTIMDINMQKTLNR-------------YLLKRGLMPRDIVMDPTTCALGY 282 (389)
T ss_pred chh---------hHHHHHHHHHHhCCeEEEEcCCcHHHHHHHHH-------------HHHHcCCCHHHEEEcCCCccccC
Confidence 321 46789999999999999876 22222211 14456887 77776555 3455
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 010627 335 YPEVAVRTMAQICVEAES 352 (505)
Q Consensus 335 yP~~~V~~m~~i~~~aE~ 352 (505)
=...++.+|.+|-+.|=+
T Consensus 283 Gieya~s~~erIRraALk 300 (389)
T TIGR00381 283 GIEFSITNMERIRLSGLK 300 (389)
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 566788888777666543
No 415
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=38.76 E-value=4.4e+02 Score=26.79 Aligned_cols=129 Identities=18% Similarity=0.152 Sum_probs=0.0
Q ss_pred CChhcHHHHHhcccccCCCEEEEc-------------CCCChhHHHHHHHHHhccCCCceEEEEec---C----HHHHhc
Q 010627 185 LTEKDKEDILKWGIPNQIDMIALS-------------FVRKGSDLVGVRKLLGGHAKNILLMSKVE---N----QEGVAN 244 (505)
Q Consensus 185 lte~D~~di~~~al~~g~d~V~~s-------------fV~sa~dv~~v~~~l~~~~~~~~IiakIE---t----~~av~n 244 (505)
++-+|..-- +.+-+.|+|.+.+. ---+.+++...-+.+...-....|++=++ - .++++|
T Consensus 20 ~tayD~~sA-rl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~~ 98 (264)
T PRK00311 20 LTAYDYPFA-KLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALRN 98 (264)
T ss_pred EeCCCHHHH-HHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHHH
Q ss_pred HHHHHh-c-CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeE----EehhhhHhhhcCCCCChHH------HHH
Q 010627 245 FDDILA-N-SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVV----TATQMLESMIKSPRPTRAE------ATD 312 (505)
Q Consensus 245 ldeI~~-~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi----~ATqmLeSM~~~~~ptraE------v~D 312 (505)
.-.+++ + ++||-+--| ..+...|+++.++|.||+ +--|--.++-.--..-|.+ +.|
T Consensus 99 a~r~~~~aGa~aVkiEdg------------~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~r 166 (264)
T PRK00311 99 AGRLMKEAGAHAVKLEGG------------EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLED 166 (264)
T ss_pred HHHHHHHhCCeEEEEcCc------------HHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecCCHHHHHHHHHH
Q ss_pred HHHHHHcCCceeee
Q 010627 313 VANAVLDGTDCVML 326 (505)
Q Consensus 313 v~nav~~G~D~imL 326 (505)
.......|+|+++|
T Consensus 167 a~a~~eAGA~~i~l 180 (264)
T PRK00311 167 AKALEEAGAFALVL 180 (264)
T ss_pred HHHHHHCCCCEEEE
No 416
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=38.65 E-value=37 Score=36.39 Aligned_cols=92 Identities=22% Similarity=0.268 Sum_probs=57.8
Q ss_pred cHHHHHhcccccC-CCEEEEcCCC--C---------------hhHHHHHHHHHhccC--CCceEEEEecCHHHHhcHHHH
Q 010627 189 DKEDILKWGIPNQ-IDMIALSFVR--K---------------GSDLVGVRKLLGGHA--KNILLMSKVENQEGVANFDDI 248 (505)
Q Consensus 189 D~~di~~~al~~g-~d~V~~sfV~--s---------------a~dv~~v~~~l~~~~--~~~~IiakIEt~~av~nldeI 248 (505)
+..++ ..+++.+ +|+|.++-.. + ..-+.++++.+...+ .++.||+ --|+.+-.++
T Consensus 226 ~~~~~-a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~via----sGGI~~g~Dv 300 (392)
T cd02808 226 GEGDI-AAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIA----SGGLRTGADV 300 (392)
T ss_pred CHHHH-HHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEE----ECCCCCHHHH
Confidence 44466 4555555 9999998874 1 223344555554332 3577776 2355555555
Q ss_pred Hh----cCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehh
Q 010627 249 LA----NSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQ 294 (505)
Q Consensus 249 ~~----~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATq 294 (505)
++ -+|++.+||.=|-. +-......|+.-.+|+++|||
T Consensus 301 ~kalaLGAd~V~ig~~~l~a---------l~c~~~~~c~~~~cP~Giat~ 341 (392)
T cd02808 301 AKALALGADAVGIGTAALIA---------LGCIQARKCHTNTCPVGVATQ 341 (392)
T ss_pred HHHHHcCCCeeeechHHHHh---------cchHHHHhcCCCCCCcccccC
Confidence 54 37999999865532 112345889999999999998
No 417
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=38.64 E-value=1.7e+02 Score=27.69 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=35.6
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCCe
Q 010627 30 VPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGIL 73 (505)
Q Consensus 30 ~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~~ 73 (505)
.+.+++++++|++.+.+...+.+..++.+.++.+++..+.++.+
T Consensus 24 ~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (212)
T PRK00043 24 LEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRRYGVP 67 (212)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCe
Confidence 46788999999999999988888777777888887766666654
No 418
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=38.64 E-value=1.4e+02 Score=25.40 Aligned_cols=69 Identities=10% Similarity=0.250 Sum_probs=44.5
Q ss_pred CcEEecCCCEEEEEecC-CCCCCccEEEecchhhhcccCCCCEEEEe-CCeEEEEEEEEeeeCC-eEEEEEeeCc
Q 010627 94 KPIQLKQGQEITISTDY-TIKGDENMICMSYKKLAVDVQPGSVILCS-DGTISFTVLECNVKAG-LVKCRCENSA 165 (505)
Q Consensus 94 ~~i~l~~G~~v~l~~~~-~~~~~~~~i~v~~~~~~~~v~~Gd~I~id-DG~i~l~V~~v~~~~~-~i~~~v~~gG 165 (505)
+.+.+.+|+.+.|.+.. .........+++.. ...+....++.++ ||.|.+.=.+. .|.+ ...|.+.+..
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~--~~~i~~~~Ri~~~~~GnL~fs~v~~-~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSD--LLHITQDERVSMGQNGNLYFANVEE-QDSHPDYICHAHFPG 82 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCC--CccccccccEEECCCceEEEEEEeh-hhCCCCeEEEEEccc
Confidence 35889999999999862 22223445556432 2334457788885 79998875532 2343 5899988765
No 419
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=38.53 E-value=3.3e+02 Score=28.00 Aligned_cols=100 Identities=12% Similarity=0.182 Sum_probs=63.1
Q ss_pred ceEEEEecCHHHHhcHHHHHhc-CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEE-ehhh--h-Hhhh--cC
Q 010627 230 ILLMSKVENQEGVANFDDILAN-SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVT-ATQM--L-ESMI--KS 302 (505)
Q Consensus 230 ~~IiakIEt~~av~nldeI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~-ATqm--L-eSM~--~~ 302 (505)
+++.-.+.+...++.+..-++. .+-||+.. -.+|+++=-..-+++++.|++.|.+|=- -.++ - +... ..
T Consensus 78 vPV~lHLDHg~~~e~i~~ai~~GftSVM~Dg----S~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~ 153 (286)
T PRK08610 78 IPVAIHLDHGSSFEKCKEAIDAGFTSVMIDA----SHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGI 153 (286)
T ss_pred CCEEEECCCCCCHHHHHHHHHcCCCEEEEeC----CCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCccc
Confidence 6788888776544444333332 36899973 3578888888889999999999998710 0001 0 1100 00
Q ss_pred CCCChHHHHHHHHHHH-cCCceeeecccCCCCCCH
Q 010627 303 PRPTRAEATDVANAVL-DGTDCVMLSGETAAGAYP 336 (505)
Q Consensus 303 ~~ptraEv~Dv~nav~-~G~D~imLs~Eta~G~yP 336 (505)
..-+.. +...++. -|+|++-.|-=|+.|.|+
T Consensus 154 ~yT~pe---ea~~Fv~~TgvD~LAvaiGt~HG~Y~ 185 (286)
T PRK08610 154 IYADPK---ECQELVEKTGIDALAPALGSVHGPYK 185 (286)
T ss_pred ccCCHH---HHHHHHHHHCCCEEEeeccccccccC
Confidence 112223 3344554 499999999999999995
No 420
>PRK06381 threonine synthase; Validated
Probab=38.30 E-value=2.3e+02 Score=29.06 Aligned_cols=86 Identities=19% Similarity=0.195 Sum_probs=50.1
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHhcccCchhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcCCcEEEEEcCCchHHHHH
Q 010627 327 SGETAAGAYPEVAVRTMAQICVEAESTLDYGDVFKRVMQHSPVPMSPLESLASSAVRTANSARATLILVLTRGGSTAKLV 406 (505)
Q Consensus 327 s~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~l 406 (505)
|.|-.+|+=|+.-.+.+..-+-. ..++.+ +...+| .-+-.+..+...+..|.+.+++-|+.. .+|+++..+
T Consensus 8 ~~~~~~g~TPL~~~~~l~~~~G~--~~i~~K-----~E~~np-tGS~K~R~a~~~l~~a~~~g~~~lv~a-SsGN~g~al 78 (319)
T PRK06381 8 SEEKPPGGTPLLRARKLEEELGL--RKIYLK-----FEGANP-TGTQKDRIAEAHVRRAMRLGYSGITVG-TCGNYGASI 78 (319)
T ss_pred cccccCCCCceeEhHhhHHhcCC--ceEEEE-----ecCCCC-ccCcHHHHHHHHHHHHHHcCCCEEEEe-CCcHHHHHH
Confidence 66778888887655554322100 122222 111121 123345667777888888888876664 479998876
Q ss_pred Hhh--CCCCcEEEEeecc
Q 010627 407 AKY--RPGMPILSVVVPE 422 (505)
Q Consensus 407 s~~--RP~~pIiav~~p~ 422 (505)
|.+ +-..|.+.+ +|.
T Consensus 79 A~~aa~~G~~~~iv-vp~ 95 (319)
T PRK06381 79 AYFARLYGLKAVIF-IPR 95 (319)
T ss_pred HHHHHHcCCcEEEE-ECC
Confidence 655 345777777 554
No 421
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=38.28 E-value=2.9e+02 Score=27.43 Aligned_cols=55 Identities=20% Similarity=0.246 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHH
Q 010627 273 LAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTM 343 (505)
Q Consensus 273 ~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m 343 (505)
.+....++.++++|+++++-|. ++. . -...+...++..|+|++.- .||-...+++
T Consensus 210 ~~~~~~v~~~~~~Gl~v~~wT~--~~~-----~--n~~~~~~~l~~~GvdgiiT-------D~p~~~~~~~ 264 (265)
T cd08564 210 FWTEEFVKKAHENGLKVMTYFD--EPV-----N--DNEEDYKVYLELGVDCICP-------NDPVLLVNFL 264 (265)
T ss_pred hhhHHHHHHHHHcCCEEEEecC--CCC-----C--CCHHHHHHHHHcCCCEEEc-------CCHHHHHHhh
Confidence 4578899999999999998872 111 1 1133445567789999765 6887766554
No 422
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=38.26 E-value=2.3e+02 Score=28.92 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=30.2
Q ss_pred HHHHHHHhc----CCcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 010627 380 SAVRTANSA----RATLILVLTRGGSTAKLVAK----YRPGMPILSV 418 (505)
Q Consensus 380 ~av~~a~~~----~a~~Ivv~T~sG~ta~~ls~----~RP~~pIiav 418 (505)
-+.++.+++ ..++||+..-+|.|+--+++ ++|.++|+++
T Consensus 156 ~~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV 202 (311)
T TIGR01275 156 AVLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGV 202 (311)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEE
Confidence 355666665 47899999999999765544 4899999988
No 423
>PRK07476 eutB threonine dehydratase; Provisional
Probab=38.25 E-value=4.6e+02 Score=26.94 Aligned_cols=115 Identities=17% Similarity=0.224 Sum_probs=68.2
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCc
Q 010627 277 VMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDY 356 (505)
Q Consensus 277 ~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 356 (505)
.+...|++.|.|+.+- .|..+.-..+...-..|++-+... + ..-++++...+++++- .. .|
T Consensus 81 alA~~a~~~G~~~~i~-----------vp~~~~~~k~~~~~~~GA~V~~~~-~-----~~~~~~~~a~~~~~~~-g~-~~ 141 (322)
T PRK07476 81 ALAYAARALGIRATIC-----------MSRLVPANKVDAIRALGAEVRIVG-R-----SQDDAQAEVERLVREE-GL-TM 141 (322)
T ss_pred HHHHHHHHhCCCEEEE-----------eCCCCCHHHHHHHHHcCCEEEEEC-C-----CHHHHHHHHHHHHHhc-CC-EE
Confidence 5667899999998763 233333344556667899966553 2 2446777666655431 11 12
Q ss_pred hhhHHhhhhCCCCCCCchhhHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHH----hhCCCCcEEEE
Q 010627 357 GDVFKRVMQHSPVPMSPLESLASSAVRTANSA-RATLILVLTRGGSTAKLVA----KYRPGMPILSV 418 (505)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~-~a~~Ivv~T~sG~ta~~ls----~~RP~~pIiav 418 (505)
-..| ..+. ..+.....+.++..++ +.++||+.+-+|.+.--++ .+.|...|+++
T Consensus 142 ~~~~-----~n~~---~~~g~~t~~~Ei~~Q~~~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigV 200 (322)
T PRK07476 142 VPPF-----DDPR---IIAGQGTIGLEILEALPDVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGV 200 (322)
T ss_pred eCCC-----CCcc---eeechhHHHHHHHHhCcCCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 1111 1111 1122234456666665 4688999999998865544 45788999999
No 424
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=38.16 E-value=1.4e+02 Score=30.60 Aligned_cols=48 Identities=8% Similarity=0.071 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCCee
Q 010627 27 SRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGILC 74 (505)
Q Consensus 27 ~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~~v 74 (505)
+.+.+.+++.+++|.+-.-+..||-..++..+.-+.+.+.+...|.+|
T Consensus 84 ~~~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~V 131 (283)
T PRK07998 84 GKTFEDVKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPV 131 (283)
T ss_pred CCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 347899999999999999999999999988888888887777777553
No 425
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=37.80 E-value=39 Score=31.90 Aligned_cols=62 Identities=18% Similarity=0.241 Sum_probs=45.1
Q ss_pred HHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHH--hcHHHHHhcC-CeeEEec
Q 010627 192 DILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGV--ANFDDILANS-DAFMVAR 259 (505)
Q Consensus 192 di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av--~nldeI~~~s-DgImIaR 259 (505)
.+ .-+++.|+|.|.+=.. ++++++++.+.+...+.++. ||---|+ +|+.+.++.- |+|-+|.
T Consensus 92 e~-~ea~~~g~d~I~lD~~-~~~~~~~~v~~l~~~~~~v~----ie~SGGI~~~ni~~ya~~gvD~isvg~ 156 (169)
T PF01729_consen 92 EA-EEALEAGADIIMLDNM-SPEDLKEAVEELRELNPRVK----IEASGGITLENIAEYAKTGVDVISVGS 156 (169)
T ss_dssp HH-HHHHHTT-SEEEEES--CHHHHHHHHHHHHHHTTTSE----EEEESSSSTTTHHHHHHTT-SEEEECH
T ss_pred HH-HHHHHhCCCEEEecCc-CHHHHHHHHHHHhhcCCcEE----EEEECCCCHHHHHHHHhcCCCEEEcCh
Confidence 44 5678899999999885 78999999998877777744 4433333 6888888774 9998863
No 426
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=37.80 E-value=2.7e+02 Score=30.34 Aligned_cols=238 Identities=18% Similarity=0.214 Sum_probs=137.5
Q ss_pred eEEEEecCCCeeEEeecCCCCcEEecCC------CEEEEEecCCCCCCccEEEecchhhhcccCCCCEEEEeCCeEEEEE
Q 010627 74 CAVMLDTKGPEIRTGFLKDGKPIQLKQG------QEITISTDYTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTV 147 (505)
Q Consensus 74 v~i~~Dl~GpkiR~g~~~~~~~i~l~~G------~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V 147 (505)
.+.++.-.||..|+|.+- .|+...+ +.|-|. ++...+..-+-...+.+|+.|+...+.+++.|
T Consensus 32 ~G~~lea~g~~~~iGelc---~i~~~~~~~~~~aEVvgf~--------~~~~~L~p~~~~~gv~~g~~V~~~~~~~~v~~ 100 (441)
T COG1157 32 TGLLLEAVGPQARIGELC---KIERSRGSEKVLAEVVGFN--------EERVLLMPFEPVEGVSPGAEVVPTGRPLSVPV 100 (441)
T ss_pred eeeEEEEecCCCcccceE---EEEecCCCCceeEEEEEEc--------CCeEEEeccCccccCCCCCEEEecCCcccccc
Confidence 467788889999988662 2444333 323222 23344433334578999999988866666554
Q ss_pred EEEeeeCCeEEEEEeeC-ceecCCCCcccCC--ccccCCCCChhcHHHHHhcccccCCCEEE---------------EcC
Q 010627 148 LECNVKAGLVKCRCENS-AMLGERKNVNLPG--VIVDLPTLTEKDKEDILKWGIPNQIDMIA---------------LSF 209 (505)
Q Consensus 148 ~~v~~~~~~i~~~v~~g-G~l~s~Kgvnlp~--~~~~l~~lte~D~~di~~~al~~g~d~V~---------------~sf 209 (505)
- +.+--+|+++ |.--.+++.--.. ..+..|+.+.--+.-| +-.++.|+..|- =|-
T Consensus 101 g------~~lLGRVld~~G~plDg~~~~~~~~~~~l~~~pp~pm~R~~I-~~~l~tGVRaIDgllT~G~GQRiGIFAgsG 173 (441)
T COG1157 101 G------DALLGRVLDGLGRPLDGGGLPDGTERRPLDAPPPNPLKRRPI-EEPLDTGVRAIDGLLTCGKGQRIGIFAGSG 173 (441)
T ss_pred C------hhhhhhhhccCCCcCcCCCCCCCcccccccCCCCCchhcccc-cccccccceeeecccccccCceeEEEecCC
Confidence 3 3555666654 3333332221111 2344455555556666 666777765431 111
Q ss_pred CCChhHHHHHHHHH-hccCCCceEEEEe-cCHHHHh-cHHHHHhcC----CeeEEecCcccCcCCchhHHHHH--HHHHH
Q 010627 210 VRKGSDLVGVRKLL-GGHAKNILLMSKV-ENQEGVA-NFDDILANS----DAFMVARGDLGMEIPIEKIFLAQ--KVMIY 280 (505)
Q Consensus 210 V~sa~dv~~v~~~l-~~~~~~~~IiakI-Et~~av~-nldeI~~~s----DgImIaRgDLg~e~~~~~v~~~q--k~Ii~ 280 (505)
|-.- .+-.++ +....++.|||.| |.-.=|. -+++++... -.++++..|-+ ++.++..++ ..|.+
T Consensus 174 VGKS----tLLgMiar~t~aDv~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvATSD~s---~l~R~~aa~~At~IAE 246 (441)
T COG1157 174 VGKS----TLLGMIARNTEADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDES---ALMRLKAAFTATTIAE 246 (441)
T ss_pred CcHH----HHHHHHhccccCCEEEEEEeeccchhHHHHHHHhcchhhccceEEEEECCCCC---HHHHHHHHHHHHHHHH
Confidence 1110 011111 2224578899999 5444443 345555432 46777888865 344444444 68888
Q ss_pred HHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCC-CCHHHHHHHHHHHHHHHhcc
Q 010627 281 KCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAG-AYPEVAVRTMAQICVEAEST 353 (505)
Q Consensus 281 ~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G-~yP~~~V~~m~~i~~~aE~~ 353 (505)
--|..||-|.+ |+||++.- |.|..+=+ +-.+|+... -||--+-..|.++.+.|=+.
T Consensus 247 yFRDqG~~VLL---~mDSlTRf-----------A~AqREI~---LA~GEpP~~kGYppSVF~~LP~LlERaG~~ 303 (441)
T COG1157 247 YFRDQGKRVLL---IMDSLTRF-----------AMAQREIG---LAAGEPPATKGYPPSVFSELPRLLERAGNG 303 (441)
T ss_pred HHHhCCCeEEE---EeecHHHH-----------HHHHHHHH---HhcCCCCccCCCCchHHHHhHHHHhhcCCC
Confidence 99999999998 89997542 33222210 125788766 79999999999999887654
No 427
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=37.65 E-value=98 Score=31.77 Aligned_cols=46 Identities=15% Similarity=0.103 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCC
Q 010627 27 SRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGI 72 (505)
Q Consensus 27 ~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~ 72 (505)
..+.|.+++.+++|.+-..+.-||-..+++.+.-+.+.+.+...|.
T Consensus 82 g~~~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv 127 (282)
T TIGR01858 82 HESLDDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDC 127 (282)
T ss_pred CCCHHHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 3479999999999999999999999999988888888877777663
No 428
>PRK11761 cysM cysteine synthase B; Provisional
Probab=37.12 E-value=4.2e+02 Score=26.99 Aligned_cols=118 Identities=15% Similarity=0.175 Sum_probs=64.8
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCc
Q 010627 277 VMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDY 356 (505)
Q Consensus 277 ~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 356 (505)
-+...|+.+|.|+.+- .|..+.-..+...-..|++-+....+ +.|. ++.+...++.++- ..+ |
T Consensus 77 alA~~a~~~G~~~~i~-----------~p~~~~~~k~~~~~~~GA~v~~~~~~---~~~~-~~~~~a~~l~~~~-~~~-~ 139 (296)
T PRK11761 77 ALAMIAAIKGYRMKLI-----------MPENMSQERRAAMRAYGAELILVPKE---QGME-GARDLALQMQAEG-EGK-V 139 (296)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCCC---CChH-HHHHHHHHHHhcc-CCE-e
Confidence 4456899999999763 23333233445555689999888642 3332 4444444433321 111 1
Q ss_pred hhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcC--CcEEEEEcCCchHH----HHHHhhCCCCcEEEE
Q 010627 357 GDVFKRVMQHSPVPMSPLESLASSAVRTANSAR--ATLILVLTRGGSTA----KLVAKYRPGMPILSV 418 (505)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--a~~Ivv~T~sG~ta----~~ls~~RP~~pIiav 418 (505)
-.-|. . +..+..-...-+.++..+++ .++||+.+-+|.+. +.+..++|...|+++
T Consensus 140 ~~~~~-----n--~~~~~~~~~t~~~Ei~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigV 200 (296)
T PRK11761 140 LDQFA-----N--PDNPLAHYETTGPEIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGL 200 (296)
T ss_pred cCCCC-----C--hhhHHHHhhchHHHHHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEE
Confidence 10010 0 00110001122345555653 69999999999775 456666899999999
No 429
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=37.09 E-value=1.2e+02 Score=31.92 Aligned_cols=66 Identities=9% Similarity=0.170 Sum_probs=46.9
Q ss_pred HHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010627 216 LVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTA 292 (505)
Q Consensus 216 v~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~A 292 (505)
+..+++.+.+.+.++.|-+-.+... -+|++++++-.|.|+.+-.++ ..+..+-+.|.++|+|.+.+
T Consensus 82 a~aa~~~l~~inp~v~i~~~~~~~~-~~~~~~~~~~~DlVid~~D~~----------~~r~~in~~~~~~~ip~i~~ 147 (338)
T PRK12475 82 AIAAKEHLRKINSEVEIVPVVTDVT-VEELEELVKEVDLIIDATDNF----------DTRLLINDLSQKYNIPWIYG 147 (338)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCC-HHHHHHHhcCCCEEEEcCCCH----------HHHHHHHHHHHHcCCCEEEE
Confidence 4556666777777777766655432 357888888889888875433 34556778999999998864
No 430
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=37.00 E-value=1.1e+02 Score=31.08 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=43.7
Q ss_pred HHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHH--hcHHHHHhc-CCeeEEe
Q 010627 190 KEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGV--ANFDDILAN-SDAFMVA 258 (505)
Q Consensus 190 ~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av--~nldeI~~~-sDgImIa 258 (505)
.+++ ..+.+.|+|+|.+..+ ++++++++.+.++....+++++|- -|+ +|+.++++. +|+|.++
T Consensus 193 ~eea-~~A~~~gaD~I~ld~~-~p~~l~~~~~~~~~~~~~i~i~As----GGI~~~ni~~~~~~Gvd~I~vs 258 (272)
T cd01573 193 LEEA-LAAAEAGADILQLDKF-SPEELAELVPKLRSLAPPVLLAAA----GGINIENAAAYAAAGADILVTS 258 (272)
T ss_pred HHHH-HHHHHcCCCEEEECCC-CHHHHHHHHHHHhccCCCceEEEE----CCCCHHHHHHHHHcCCcEEEEC
Confidence 4555 5667899999999765 457787777777544345555552 233 788888887 7999775
No 431
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=36.85 E-value=90 Score=32.16 Aligned_cols=64 Identities=11% Similarity=0.079 Sum_probs=47.3
Q ss_pred HHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHH--hcHHHHHhc-CCeeEEec
Q 010627 190 KEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGV--ANFDDILAN-SDAFMVAR 259 (505)
Q Consensus 190 ~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av--~nldeI~~~-sDgImIaR 259 (505)
.++. ..+++.|+|.|.+=... +++++++.+.++..+.++ +||---|+ +|+.+.++. .|.|-+|.
T Consensus 209 l~ea-~eal~~gaDiI~LDnm~-~e~vk~av~~~~~~~~~v----~ieaSGGI~~~ni~~yA~tGvD~Is~ga 275 (289)
T PRK07896 209 LEQL-DEVLAEGAELVLLDNFP-VWQTQEAVQRRDARAPTV----LLESSGGLTLDTAAAYAETGVDYLAVGA 275 (289)
T ss_pred HHHH-HHHHHcCCCEEEeCCCC-HHHHHHHHHHHhccCCCE----EEEEECCCCHHHHHHHHhcCCCEEEeCh
Confidence 3455 66789999999999866 899999888876655554 35544344 688888887 69998853
No 432
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.83 E-value=35 Score=34.63 Aligned_cols=32 Identities=28% Similarity=0.242 Sum_probs=29.1
Q ss_pred hcCCcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 010627 387 SARATLILVLTRGGSTAKLVAK----YRPGMPILSV 418 (505)
Q Consensus 387 ~~~a~~Ivv~T~sG~ta~~ls~----~RP~~pIiav 418 (505)
+..++.+++-|.+|+||-.+|- ..|.++.+.+
T Consensus 145 ~~~gDGlIVsTptGSTAYslSaGGPIv~P~~~~~~l 180 (265)
T PRK04885 145 RFRGDGLCVSTPTGSTAYNKSLGGAVLHPSIEALQL 180 (265)
T ss_pred EEEcCEEEEECCCChHHHHhhCCCceeCCCCCeEEE
Confidence 4578999999999999999998 7889999999
No 433
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=36.81 E-value=2.7e+02 Score=25.27 Aligned_cols=49 Identities=22% Similarity=0.353 Sum_probs=35.0
Q ss_pred EEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHH---------HHHHHHHHHH
Q 010627 19 IVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQ---------ETLNNLRTAM 67 (505)
Q Consensus 19 Ii~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~---------~~i~~ir~~~ 67 (505)
+..+.-+...+.+.+++|.++|.+.+.+++-|++.+.+. ++++.++.+.
T Consensus 89 ~~~~tn~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 146 (216)
T smart00729 89 ITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLR 146 (216)
T ss_pred EEEEeCcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 333333556689999999999999888888888876553 4555555553
No 434
>PRK08328 hypothetical protein; Provisional
Probab=36.78 E-value=1.3e+02 Score=29.72 Aligned_cols=63 Identities=16% Similarity=0.209 Sum_probs=42.8
Q ss_pred HHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010627 219 VRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTA 292 (505)
Q Consensus 219 v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~A 292 (505)
+++.+.+.+.++.|-+--+.. .-+|++++++-.|.|+-+-.+. ..+..+-+.|+++|+|++.+
T Consensus 87 a~~~l~~~np~v~v~~~~~~~-~~~~~~~~l~~~D~Vid~~d~~----------~~r~~l~~~~~~~~ip~i~g 149 (231)
T PRK08328 87 AKWKLERFNSDIKIETFVGRL-SEENIDEVLKGVDVIVDCLDNF----------ETRYLLDDYAHKKGIPLVHG 149 (231)
T ss_pred HHHHHHHhCCCCEEEEEeccC-CHHHHHHHHhcCCEEEECCCCH----------HHHHHHHHHHHHcCCCEEEE
Confidence 445566667777777644432 3467888888888888763332 34556677899999998764
No 435
>PRK07591 threonine synthase; Validated
Probab=36.77 E-value=4.4e+02 Score=28.40 Aligned_cols=117 Identities=15% Similarity=0.163 Sum_probs=71.0
Q ss_pred HHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccC
Q 010627 276 KVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLD 355 (505)
Q Consensus 276 k~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~ 355 (505)
..+...|+++|.|+.+- .|..+.-..+...-..|++-+..- |.| -++++.+.+++++-+..+
T Consensus 150 ~alA~~aa~~Gl~~~I~-----------vP~~~~~~k~~~~~~~GA~Vi~v~-----g~~-d~a~~~a~~~~~~~~~~~- 211 (421)
T PRK07591 150 NSVAAHAARAGLDSCVF-----------IPADLEAGKIVGTLVYGPTLVAVD-----GNY-DDVNRLCSELANEHEGWG- 211 (421)
T ss_pred HHHHHHHHHcCCCEEEE-----------EcCCCCHHHHHHHHHcCCEEEEEC-----CCH-HHHHHHHHHHHHhcCCEE-
Confidence 35567889999998763 344444455677778999988774 345 467777766654321111
Q ss_pred chhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcC---CcEEEEEcCCchHHHHHHh----h-------CCCCcEEEE
Q 010627 356 YGDVFKRVMQHSPVPMSPLESLASSAVRTANSAR---ATLILVLTRGGSTAKLVAK----Y-------RPGMPILSV 418 (505)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~---a~~Ivv~T~sG~ta~~ls~----~-------RP~~pIiav 418 (505)
+.. ....|. ..+....-+.++..+++ .+.||+.+-+|.+..-+++ + +|...|+++
T Consensus 212 ~~n-------~~~~p~-~ieG~~Tia~Ei~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~V 280 (421)
T PRK07591 212 FVN-------INLRPY-YAEGSKTLGYEVAEQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGA 280 (421)
T ss_pred Eec-------CCCCcc-cccchHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEE
Confidence 110 000111 01112233556777774 5899999999998765544 3 577889998
No 436
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=36.70 E-value=1.2e+02 Score=31.95 Aligned_cols=66 Identities=15% Similarity=0.151 Sum_probs=47.0
Q ss_pred HHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010627 216 LVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTA 292 (505)
Q Consensus 216 v~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~A 292 (505)
++.+++.|.+.+..+.+-+.-+... -+|..++++-.|.|+-+-.++ ..+..+-++|+++++|++.+
T Consensus 84 a~~a~~~l~~~np~v~v~~~~~~i~-~~~~~~~~~~~DvVvd~~d~~----------~~r~~~n~~c~~~~ip~v~~ 149 (355)
T PRK05597 84 AESAREAMLALNPDVKVTVSVRRLT-WSNALDELRDADVILDGSDNF----------DTRHLASWAAARLGIPHVWA 149 (355)
T ss_pred HHHHHHHHHHHCCCcEEEEEEeecC-HHHHHHHHhCCCEEEECCCCH----------HHHHHHHHHHHHcCCCEEEE
Confidence 5556677777888887776544433 257788888889888775432 45556788999999998865
No 437
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=36.69 E-value=2.6e+02 Score=29.37 Aligned_cols=110 Identities=16% Similarity=0.177 Sum_probs=74.8
Q ss_pred hccccc-CCCEEEEcCCC-ChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCC----c
Q 010627 195 KWGIPN-QIDMIALSFVR-KGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIP----I 268 (505)
Q Consensus 195 ~~al~~-g~d~V~~sfV~-sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~----~ 268 (505)
...++. |+-.+..+|-. ..+++..++. . .++++.++=+..--...++ .=.|+++.-..+=|-+.+ .
T Consensus 97 ~~ii~~~~vpvv~~~~g~~~~~~i~~~~~-~-----g~~v~~~v~~~~~A~~~~~--~G~d~vI~~g~eAGGH~g~~~~~ 168 (336)
T COG2070 97 DAIIEGAGVPVVSTSFGAPPAEFVARLKA-A-----GIKVIHSVITVREALKAER--AGADAVIAQGAEAGGHRGGVDLE 168 (336)
T ss_pred hhHHhcCCCCEEeccCCCCcHHHHHHHHH-c-----CCeEEEEeCCHHHHHHHHh--CCCCEEEecCCcCCCcCCCCCCC
Confidence 455665 99999999994 7778887776 2 3577887766533222211 125888886666666655 3
Q ss_pred hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeee
Q 010627 269 EKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 326 (505)
Q Consensus 269 ~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imL 326 (505)
..+..+..+|.++++. .|||.|.-+-+ -.+++.|...|+|++..
T Consensus 169 ~~t~~Lv~ev~~~~~~--iPViAAGGI~d------------g~~i~AAlalGA~gVq~ 212 (336)
T COG2070 169 VSTFALVPEVVDAVDG--IPVIAAGGIAD------------GRGIAAALALGADGVQM 212 (336)
T ss_pred ccHHHHHHHHHHHhcC--CCEEEecCccC------------hHHHHHHHHhccHHHHh
Confidence 3446666666666655 89999887653 46788999999998765
No 438
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=36.68 E-value=1e+02 Score=31.37 Aligned_cols=61 Identities=16% Similarity=0.103 Sum_probs=39.5
Q ss_pred EecCCCCCCHHHHHHHHHhCCcEEEEec-----------CCCCHHHHHHHHHHHHHHHHHcCCeeEEEEecCCC
Q 010627 21 CTLGPASRSVPMIEKLLKAGMNVARFNF-----------SHGSHEYHQETLNNLRTAMVNTGILCAVMLDTKGP 83 (505)
Q Consensus 21 ~TiGp~~~~~~~i~~li~~G~~~~RlN~-----------shg~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~Gp 83 (505)
.|+ |-..++++-++|.++|+|+.=.++ ..-+.++..+.++.+.++.++.+.-+-+|.- -||
T Consensus 152 ~T~-~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~h-GGP 223 (268)
T PF09370_consen 152 FTT-AYVFNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCH-GGP 223 (268)
T ss_dssp EE---EE-SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEE-CTT
T ss_pred eee-eeecCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEe-CCC
Confidence 455 556689999999999999998887 2335688889999999998877655444433 344
No 439
>PRK06382 threonine dehydratase; Provisional
Probab=36.55 E-value=5.3e+02 Score=27.56 Aligned_cols=114 Identities=16% Similarity=0.248 Sum_probs=67.6
Q ss_pred HHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCch
Q 010627 278 MIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDYG 357 (505)
Q Consensus 278 Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~ 357 (505)
+..+|+..|.|+.+- .|..+-...+...-..|++-+.. ++ ..-++.+...+++++- .. +|-
T Consensus 88 ~A~aa~~~G~~~~iv-----------mp~~~~~~k~~~~~~~GA~Vv~~-~~-----~~~~a~~~a~~la~~~-~~-~~v 148 (406)
T PRK06382 88 VAYAASINGIDAKIV-----------MPEYTIPQKVNAVEAYGAHVILT-GR-----DYDEAHRYADKIAMDE-NR-TFI 148 (406)
T ss_pred HHHHHHHcCCCEEEE-----------EcCCCHHHHHHHHHHcCCEEEEE-CC-----CHHHHHHHHHHHHHhc-CC-Eec
Confidence 567899999998763 24333333444456789986643 32 3446666666665432 21 111
Q ss_pred hhHHhhhhCCCCCCCchhhHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHHhh----CCCCcEEEE
Q 010627 358 DVFKRVMQHSPVPMSPLESLASSAVRTANSA-RATLILVLTRGGSTAKLVAKY----RPGMPILSV 418 (505)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~-~a~~Ivv~T~sG~ta~~ls~~----RP~~pIiav 418 (505)
.-|. . + ...+....-+.++..++ ..++||+..-+|.++--++++ .|.+.|+++
T Consensus 149 ~~~~-----~--~-~~i~g~~t~~~Ei~eq~~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigV 206 (406)
T PRK06382 149 EAFN-----D--R-WVISGQGTIGLEIMEDLPDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGI 206 (406)
T ss_pred CccC-----C--h-HHHHHHHHHHHHHHHhcCCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 1111 0 0 11222233455666665 369999999999987655554 899999999
No 440
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=36.45 E-value=86 Score=33.18 Aligned_cols=94 Identities=16% Similarity=0.090 Sum_probs=52.6
Q ss_pred HHHHhcccccCCCEEEEcCC------CChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHh----cCCeeEEecC
Q 010627 191 EDILKWGIPNQIDMIALSFV------RKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILA----NSDAFMVARG 260 (505)
Q Consensus 191 ~di~~~al~~g~d~V~~sfV------~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~----~sDgImIaRg 260 (505)
+|. +.+.+.|+|+|.+|.. ..+..+..+.++....+.++.||+- -||.+-.+|++ -+|++++||.
T Consensus 233 ~dA-~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~d----GGIr~g~Di~kaLalGA~~V~iGr~ 307 (351)
T cd04737 233 EDA-DVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFD----SGVRRGEHVFKALASGADAVAVGRP 307 (351)
T ss_pred HHH-HHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEE----CCCCCHHHHHHHHHcCCCEEEECHH
Confidence 455 6778999999999732 2222344444433333445777763 34555555544 3799999995
Q ss_pred cccC--cCCc----hhHHHHHHHHHHHHHHcCCCe
Q 010627 261 DLGM--EIPI----EKIFLAQKVMIYKCNIQGKPV 289 (505)
Q Consensus 261 DLg~--e~~~----~~v~~~qk~Ii~~~~~~gkpv 289 (505)
=|-. .-|. ..+..+++++-......|..-
T Consensus 308 ~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~~ 342 (351)
T cd04737 308 VLYGLALGGAQGVASVLEHLNKELKIVMQLAGTRT 342 (351)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 4421 0122 233345556666666666543
No 441
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=36.43 E-value=65 Score=35.76 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=41.8
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHH
Q 010627 15 PKTKIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRT 65 (505)
Q Consensus 15 r~tkIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~ 65 (505)
.+-.+.+.+|+. ...+..+.|+++|++++=+..+||..+...+.|+.+|+
T Consensus 230 grL~V~~av~~~-~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~ 279 (502)
T PRK07107 230 KRYVVGAGINTR-DYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIRE 279 (502)
T ss_pred cCeeeeeccChh-hHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHH
Confidence 455677888885 45789999999999999999999998887778888876
No 442
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=36.38 E-value=2.5e+02 Score=27.30 Aligned_cols=110 Identities=13% Similarity=0.118 Sum_probs=61.1
Q ss_pred ChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc-CCeeEEecCcccC
Q 010627 186 TEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN-SDAFMVARGDLGM 264 (505)
Q Consensus 186 te~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-sDgImIaRgDLg~ 264 (505)
+..+...+.+.+++.|+..+=+.+ +++...+.++.+.++.+.++. .=.=|.--.++++..++. +|+++.+
T Consensus 20 ~~~~~~~~~~a~~~gGi~~iEvt~-~~~~~~~~i~~l~~~~~~~~~--iGaGTV~~~~~~~~a~~aGA~fivsp------ 90 (206)
T PRK09140 20 TPDEALAHVGALIEAGFRAIEIPL-NSPDPFDSIAALVKALGDRAL--IGAGTVLSPEQVDRLADAGGRLIVTP------ 90 (206)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeC-CCccHHHHHHHHHHHcCCCcE--EeEEecCCHHHHHHHHHcCCCEEECC------
Confidence 344444444556666677666664 555555555555544432211 111122222334444433 4555542
Q ss_pred cCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeee
Q 010627 265 EIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 326 (505)
Q Consensus 265 e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imL 326 (505)
..-..+++.|+..|.|++..+. | .+++..+...|+|.+.+
T Consensus 91 --------~~~~~v~~~~~~~~~~~~~G~~-----------t---~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 91 --------NTDPEVIRRAVALGMVVMPGVA-----------T---PTEAFAALRAGAQALKL 130 (206)
T ss_pred --------CCCHHHHHHHHHCCCcEEcccC-----------C---HHHHHHHHHcCCCEEEE
Confidence 2335678899999999886432 2 24457788899999987
No 443
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=36.38 E-value=83 Score=39.32 Aligned_cols=138 Identities=15% Similarity=0.117 Sum_probs=88.6
Q ss_pred CCCCcccCCccccCCCCChhcHHHHHhcccccCCCEEEEc---CCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcH
Q 010627 169 ERKNVNLPGVIVDLPTLTEKDKEDILKWGIPNQIDMIALS---FVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANF 245 (505)
Q Consensus 169 s~Kgvnlp~~~~~l~~lte~D~~di~~~al~~g~d~V~~s---fV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nl 245 (505)
+..|=.+|+.++ ++ ....+ +....|.|.|.-| -+.|.+|+.++..-|++.+...+|-.|+=...++..+
T Consensus 941 PG~GG~Lpg~KV-----~~-~IA~~--R~~~~G~~liSP~phhdiySieDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg~i 1012 (1485)
T PRK11750 941 PGEGGQLPGDKV-----NP-LIARL--RYSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKALVSVKLVSEPGVGTI 1012 (1485)
T ss_pred CCCCCcCccccC-----CH-HHHHH--cCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHhCCCCcEEEEEccCCCccHH
Confidence 444667777766 32 23333 4556688866533 3568888888888888888888899998776777666
Q ss_pred HH-HHh-cCCeeEEecCcccCc-----------CCch-hHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHH
Q 010627 246 DD-ILA-NSDAFMVARGDLGME-----------IPIE-KIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEAT 311 (505)
Q Consensus 246 de-I~~-~sDgImIaRgDLg~e-----------~~~~-~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~ 311 (505)
.. +++ -+|.|.|.-+|=|.- +|++ .+..+++.+...=-+....++.+.++.. -.
T Consensus 1013 a~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~Ggl~t------------~~ 1080 (1485)
T PRK11750 1013 ATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQVDGGLKT------------GL 1080 (1485)
T ss_pred HhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEEEcCCcCC------------HH
Confidence 63 332 379999965443321 2222 4556666555544444455666555441 27
Q ss_pred HHHHHHHcCCceeee
Q 010627 312 DVANAVLDGTDCVML 326 (505)
Q Consensus 312 Dv~nav~~G~D~imL 326 (505)
||+-|+..|||.+-+
T Consensus 1081 Dv~kA~aLGAd~~~~ 1095 (1485)
T PRK11750 1081 DVIKAAILGAESFGF 1095 (1485)
T ss_pred HHHHHHHcCCccccc
Confidence 999999999998755
No 444
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=36.35 E-value=4e+02 Score=27.93 Aligned_cols=131 Identities=16% Similarity=0.226 Sum_probs=66.9
Q ss_pred CCCChhcHHHHH-------hcccccCCCEEEEcC-------------CCCh----------------hHHHHHHHHHhc-
Q 010627 183 PTLTEKDKEDIL-------KWGIPNQIDMIALSF-------------VRKG----------------SDLVGVRKLLGG- 225 (505)
Q Consensus 183 ~~lte~D~~di~-------~~al~~g~d~V~~sf-------------V~sa----------------~dv~~v~~~l~~- 225 (505)
..||..|.+.|. +.|.++|+|+|=+.. .+.. +-++++|+.+..
T Consensus 132 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~ 211 (353)
T cd04735 132 RELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKH 211 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccc
Confidence 357888777763 467789999996632 3332 223344444421
Q ss_pred cCCCceEEEEecC----------HHHHhcHHHHHhc-CCeeEEecCcccCcC---CchhHHHHHHHHHHHHHHcCCCeEE
Q 010627 226 HAKNILLMSKVEN----------QEGVANFDDILAN-SDAFMVARGDLGMEI---PIEKIFLAQKVMIYKCNIQGKPVVT 291 (505)
Q Consensus 226 ~~~~~~IiakIEt----------~~av~nldeI~~~-sDgImIaRgDLg~e~---~~~~v~~~qk~Ii~~~~~~gkpvi~ 291 (505)
...+..|-.+|-- .+.++-+..+.+. .|.|=|..|.....- +.... ...+.+ +.+...++||+.
T Consensus 212 ~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~-~~~~~i-k~~~~~~iPVi~ 289 (353)
T cd04735 212 ADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQ-TIMELV-KERIAGRLPLIA 289 (353)
T ss_pred cCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchH-HHHHHH-HHHhCCCCCEEE
Confidence 0145666667642 2233333333333 588888766543211 11111 111222 222223689887
Q ss_pred ehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 292 ATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 292 ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
...+ -|.+ +...++..|+|+|++.
T Consensus 290 ~Ggi---------~t~e---~ae~~l~~gaD~V~~g 313 (353)
T cd04735 290 VGSI---------NTPD---DALEALETGADLVAIG 313 (353)
T ss_pred ECCC---------CCHH---HHHHHHHcCCChHHHh
Confidence 5443 2333 3455666799999874
No 445
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=36.34 E-value=3.7e+02 Score=27.51 Aligned_cols=129 Identities=14% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc-CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCe---EE
Q 010627 216 LVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN-SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPV---VT 291 (505)
Q Consensus 216 v~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpv---i~ 291 (505)
...++.+.... .++|.-.+.+....+.+.+-++. .+-||+. |-.+|+++=-..-+++++.|+..|..| +-
T Consensus 58 ~~~~~~~a~~~--~VPV~lHLDH~~~~~~i~~ai~~GftSVMiD----~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG 131 (276)
T cd00947 58 VAMVKAAAERA--SVPVALHLDHGSSFELIKRAIRAGFSSVMID----GSHLPFEENVAKTKEVVELAHAYGVSVEAELG 131 (276)
T ss_pred HHHHHHHHHHC--CCCEEEECCCCCCHHHHHHHHHhCCCEEEeC----CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEe
Q ss_pred ehhhhHhhhcCCCCChHHHHHHHHHHHc-CCceeeecccCCCCCC----HHHHHHHHHHHHHHH
Q 010627 292 ATQMLESMIKSPRPTRAEATDVANAVLD-GTDCVMLSGETAAGAY----PEVAVRTMAQICVEA 350 (505)
Q Consensus 292 ATqmLeSM~~~~~ptraEv~Dv~nav~~-G~D~imLs~Eta~G~y----P~~~V~~m~~i~~~a 350 (505)
...=-|.-.....-......++..++.. |+|++..|--|+.|.| |.--.+.+.+|....
T Consensus 132 ~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~ 195 (276)
T cd00947 132 RIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV 195 (276)
T ss_pred eecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh
No 446
>PLN02979 glycolate oxidase
Probab=36.20 E-value=1.8e+02 Score=31.09 Aligned_cols=87 Identities=17% Similarity=0.214 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhc----CCeeEE----ecCcccCcCCchhHHHHHHHHHHHHH
Q 010627 212 KGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILAN----SDAFMV----ARGDLGMEIPIEKIFLAQKVMIYKCN 283 (505)
Q Consensus 212 sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~----sDgImI----aRgDLg~e~~~~~v~~~qk~Ii~~~~ 283 (505)
+-+|+..+|+.- +.+||.| +|.+.++...+ +|+|.| ||. ....+.....+.+...
T Consensus 211 tW~dl~wlr~~~-----~~PvivK-----gV~~~~dA~~a~~~Gvd~I~VsnhGGrq-------ld~~p~t~~~L~ei~~ 273 (366)
T PLN02979 211 SWKDVQWLQTIT-----KLPILVK-----GVLTGEDARIAIQAGAAGIIVSNHGARQ-------LDYVPATISALEEVVK 273 (366)
T ss_pred CHHHHHHHHhcc-----CCCEEee-----cCCCHHHHHHHHhcCCCEEEECCCCcCC-------CCCchhHHHHHHHHHH
Q ss_pred HcC--CCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 284 IQG--KPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 284 ~~g--kpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
+.+ .|++...-+= .-.|++.|+..|+|++++.
T Consensus 274 ~~~~~~~Vi~dGGIr------------~G~Di~KALALGAdaV~iG 307 (366)
T PLN02979 274 ATQGRIPVFLDGGVR------------RGTDVFKALALGASGIFIG 307 (366)
T ss_pred HhCCCCeEEEeCCcC------------cHHHHHHHHHcCCCEEEEc
No 447
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=36.07 E-value=1.3e+02 Score=28.28 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=38.1
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCCe
Q 010627 30 VPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGIL 73 (505)
Q Consensus 30 ~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~~ 73 (505)
.+.+++++++|++.+.+..-+.+..++.+.+..++...++++.+
T Consensus 16 ~~~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~~~~~~~ 59 (196)
T TIGR00693 16 LNRVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELCRRYGVP 59 (196)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHHHHhCCe
Confidence 56788999999999999988888888889999999988877755
No 448
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=36.03 E-value=4e+02 Score=28.00 Aligned_cols=116 Identities=16% Similarity=0.222 Sum_probs=69.0
Q ss_pred HHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccC
Q 010627 276 KVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLD 355 (505)
Q Consensus 276 k~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~ 355 (505)
.-+...|+..|.|+.+- .|..+.-..+...-..|++-++. + ...-++.+...+++.+-. ..
T Consensus 61 ~alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~V~~~-~-----~~~~~a~~~a~~~~~~~~--~~ 121 (380)
T TIGR01127 61 QGVAYAAKKFGIKAVIV-----------MPESAPPSKVKATKSYGAEVILH-G-----DDYDEAYAFATSLAEEEG--RV 121 (380)
T ss_pred HHHHHHHHHcCCCEEEE-----------EcCCCcHHHHHHHHHCCCEEEEE-C-----CCHHHHHHHHHHHHHhcC--CE
Confidence 35667899999998763 23333344556677789987654 2 234577777666654422 12
Q ss_pred chhhHHhhhhCCCCCCCchhhHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHH----hhCCCCcEEEE
Q 010627 356 YGDVFKRVMQHSPVPMSPLESLASSAVRTANSA-RATLILVLTRGGSTAKLVA----KYRPGMPILSV 418 (505)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~-~a~~Ivv~T~sG~ta~~ls----~~RP~~pIiav 418 (505)
|-..|. .+. ..+.-..-+.++..++ +.++||+..-+|.+.--++ .++|...|+++
T Consensus 122 ~~~~~~-----~~~---~~~g~~t~~~Ei~~q~~~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigV 181 (380)
T TIGR01127 122 FVHPFD-----DEF---VMAGQGTIGLEIMEDIPDVDTVIVPVGGGGLISGVASAAKQINPNVKVIGV 181 (380)
T ss_pred ecCCCC-----Chh---hhhhhHHHHHHHHHhCCCCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 211111 110 1111122344555555 4799999999998876444 44799999999
No 449
>PRK12677 xylose isomerase; Provisional
Probab=35.95 E-value=5.3e+02 Score=27.54 Aligned_cols=154 Identities=12% Similarity=0.035 Sum_probs=83.2
Q ss_pred ChhcHHHHHhcccccCCCEEEEcC---C---CC----hhHHHHHHHHHhccCCCceEEEE------------e------c
Q 010627 186 TEKDKEDILKWGIPNQIDMIALSF---V---RK----GSDLVGVRKLLGGHAKNILLMSK------------V------E 237 (505)
Q Consensus 186 te~D~~di~~~al~~g~d~V~~sf---V---~s----a~dv~~v~~~l~~~~~~~~Iiak------------I------E 237 (505)
+..|..+.+..+.+.|+++|-+.. . .+ ...+.++++.+.+.|-.+..+.- + .
T Consensus 29 ~~~~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~lts~d~~~ 108 (384)
T PRK12677 29 PPLDPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDGAFTSNDRDV 108 (384)
T ss_pred CCCCHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCCcCCCCCHHH
Confidence 344555555788899999997762 1 11 12488899999877654333210 0 1
Q ss_pred CHHHHhcHHHHHh---c--CCeeEEecCcccCcCCc----h----hHHHHHHHHHHHHHHcCCCeEEehhhhHhhh----
Q 010627 238 NQEGVANFDDILA---N--SDAFMVARGDLGMEIPI----E----KIFLAQKVMIYKCNIQGKPVVTATQMLESMI---- 300 (505)
Q Consensus 238 t~~av~nldeI~~---~--sDgImIaRgDLg~e~~~----~----~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~---- 300 (505)
...+++.+.+-+. . ++.+.+-.|--|.+.+. + .+....+.+.+.+.+.|.-|-++ ||.+-
T Consensus 109 R~~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~la---IEpkp~ep~ 185 (384)
T PRK12677 109 RRYALRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFA---LEPKPNEPR 185 (384)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEE---EccCCCCCC
Confidence 1234444433333 2 35566655544444322 1 22233345556666655444443 34432
Q ss_pred -cCCCCChHHHHHHHHHHHcCC-ceee--ecccCCCCCCHHHHHHH
Q 010627 301 -KSPRPTRAEATDVANAVLDGT-DCVM--LSGETAAGAYPEVAVRT 342 (505)
Q Consensus 301 -~~~~ptraEv~Dv~nav~~G~-D~im--Ls~Eta~G~yP~~~V~~ 342 (505)
....||-.+...+.+.+..+. =++. +......|..|.+++..
T Consensus 186 ~~~~l~t~~~al~li~~lg~~~~vGv~lD~gH~~m~g~n~~~~i~~ 231 (384)
T PRK12677 186 GDILLPTVGHALAFIATLEHPEMVGLNPEVGHEQMAGLNFTHGIAQ 231 (384)
T ss_pred CCeeeCCHHHHHHHHHHhCCCccEEEeeechHHHhcCCCHHHHHHH
Confidence 234688888877777775443 2244 35555677788777755
No 450
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=35.88 E-value=3.9e+02 Score=26.97 Aligned_cols=129 Identities=17% Similarity=0.175 Sum_probs=0.0
Q ss_pred CChhcHHHHHhcccccCCCEEEEcCC-------------CChhHHHHHHHHHhccCCCceEEEEec-------CHHHHhc
Q 010627 185 LTEKDKEDILKWGIPNQIDMIALSFV-------------RKGSDLVGVRKLLGGHAKNILLMSKVE-------NQEGVAN 244 (505)
Q Consensus 185 lte~D~~di~~~al~~g~d~V~~sfV-------------~sa~dv~~v~~~l~~~~~~~~IiakIE-------t~~av~n 244 (505)
++-+|.--- +.+-+.|+|.+.+..- -+.+++..--+.+...-..+.|++=++ -.++++|
T Consensus 17 ~~ayD~~sA-~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~ 95 (254)
T cd06557 17 LTAYDYPTA-KLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRN 95 (254)
T ss_pred EeCCCHHHH-HHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHH
Q ss_pred HHHHHh-c-CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeE--------EehhhhHhhhcCCCCChHHH--HH
Q 010627 245 FDDILA-N-SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVV--------TATQMLESMIKSPRPTRAEA--TD 312 (505)
Q Consensus 245 ldeI~~-~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi--------~ATqmLeSM~~~~~ptraEv--~D 312 (505)
.-.+++ + ++||.|--|+ .+...|+++.++|.||+ ..+++=.-.+..-...+++- .|
T Consensus 96 a~r~~~~aGa~aVkiEd~~------------~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~r 163 (254)
T cd06557 96 AARLMKEAGADAVKLEGGA------------EVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLED 163 (254)
T ss_pred HHHHHHHhCCeEEEEcCcH------------HHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHHHHHH
Q ss_pred HHHHHHcCCceeee
Q 010627 313 VANAVLDGTDCVML 326 (505)
Q Consensus 313 v~nav~~G~D~imL 326 (505)
.......|+|+++|
T Consensus 164 a~a~~~AGA~~i~l 177 (254)
T cd06557 164 ALALEEAGAFALVL 177 (254)
T ss_pred HHHHHHCCCCEEEE
No 451
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=35.88 E-value=4.2e+02 Score=25.70 Aligned_cols=108 Identities=13% Similarity=0.069 Sum_probs=57.8
Q ss_pred HHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCchh
Q 010627 191 EDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEK 270 (505)
Q Consensus 191 ~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~ 270 (505)
+++ +.++++|+||+..|. .+.+-++. .. . .++.++.-..|++-+....+ .-+|.+-+-+.+ .+|++.
T Consensus 74 ~~~-~~a~~aGA~fivsp~-~~~~v~~~-~~---~--~~~~~~~G~~t~~E~~~A~~--~Gad~vk~Fpa~---~~G~~~ 140 (206)
T PRK09140 74 EQV-DRLADAGGRLIVTPN-TDPEVIRR-AV---A--LGMVVMPGVATPTEAFAALR--AGAQALKLFPAS---QLGPAG 140 (206)
T ss_pred HHH-HHHHHcCCCEEECCC-CCHHHHHH-HH---H--CCCcEEcccCCHHHHHHHHH--cCCCEEEECCCC---CCCHHH
Confidence 355 667899999998875 33333332 22 2 24456664555433322111 226888774432 244444
Q ss_pred HHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeeccc
Q 010627 271 IFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGE 329 (505)
Q Consensus 271 v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~E 329 (505)
+..+.+.+- ...|++ |+-=+ ...++..+...|+|++.+++.
T Consensus 141 l~~l~~~~~-----~~ipvv-aiGGI------------~~~n~~~~~~aGa~~vav~s~ 181 (206)
T PRK09140 141 IKALRAVLP-----PDVPVF-AVGGV------------TPENLAPYLAAGAAGFGLGSA 181 (206)
T ss_pred HHHHHhhcC-----CCCeEE-EECCC------------CHHHHHHHHHCCCeEEEEehH
Confidence 333222111 247765 33211 125667888889999998654
No 452
>PRK08185 hypothetical protein; Provisional
Probab=35.81 E-value=2.6e+02 Score=28.70 Aligned_cols=106 Identities=13% Similarity=0.186 Sum_probs=69.4
Q ss_pred CCceEEEEecCHHHHhcHHHHHhc-CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHh----hhcC
Q 010627 228 KNILLMSKVENQEGVANFDDILAN-SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLES----MIKS 302 (505)
Q Consensus 228 ~~~~IiakIEt~~av~nldeI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeS----M~~~ 302 (505)
.++++.-.+.+..-++.+..-++. .+.||+.--+ +|.++-...-+++++.|+.+|.++=.-=-.+-. ....
T Consensus 67 ~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~----l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~ 142 (283)
T PRK08185 67 SPVPFVIHLDHGATIEDVMRAIRCGFTSVMIDGSL----LPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGG 142 (283)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCC----CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccc
Confidence 367888888887655555554543 3789997544 588888889999999999999997211111110 0000
Q ss_pred CCC-ChHHHHHHHHHHHc-CCceeeecccCCCCCCHH
Q 010627 303 PRP-TRAEATDVANAVLD-GTDCVMLSGETAAGAYPE 337 (505)
Q Consensus 303 ~~p-traEv~Dv~nav~~-G~D~imLs~Eta~G~yP~ 337 (505)
... ..-...+...++.. |+|++-.|--|+.|.||-
T Consensus 143 ~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~ 179 (283)
T PRK08185 143 VSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPK 179 (283)
T ss_pred cccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCC
Confidence 000 00122334667776 999999999999999964
No 453
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=35.61 E-value=64 Score=28.82 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=24.7
Q ss_pred cCCCCChHHHHHHHHHHHcCCceeeecccC
Q 010627 301 KSPRPTRAEATDVANAVLDGTDCVMLSGET 330 (505)
Q Consensus 301 ~~~~ptraEv~Dv~nav~~G~D~imLs~Et 330 (505)
.-|-..|-+...+..|...|+|+|++.+-.
T Consensus 33 rvpC~Grv~~~~il~Af~~GADGV~V~gC~ 62 (124)
T PF02662_consen 33 RVPCSGRVDPEFILRAFEKGADGVLVAGCH 62 (124)
T ss_pred EccCCCccCHHHHHHHHHcCCCEEEEeCCC
Confidence 445666778889999999999999996655
No 454
>PRK10425 DNase TatD; Provisional
Probab=35.43 E-value=2.3e+02 Score=28.43 Aligned_cols=102 Identities=14% Similarity=0.116 Sum_probs=61.8
Q ss_pred hcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhcc-------CCCceEEEEecCHHHHhcHHHHHhcCCeeEEecC
Q 010627 188 KDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGH-------AKNILLMSKVENQEGVANFDDILANSDAFMVARG 260 (505)
Q Consensus 188 ~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~-------~~~~~IiakIEt~~av~nldeI~~~sDgImIaRg 260 (505)
.|.+.+.+.+.+.|+..++.+-+ +.++..++.++.... |-++.-+.. -+.+.++.+++++.... ++|=|
T Consensus 15 ~d~~~vl~~a~~~gv~~~i~~~~-~~~~~~~~~~l~~~~~~v~~~~GiHP~~~~~-~~~~~~~~l~~~~~~~~--~vaIG 90 (258)
T PRK10425 15 KDRDDVVARAFAAGVNGMLITGT-NLRESQQAQKLARQYPSCWSTAGVHPHDSSQ-WQAATEEAIIELAAQPE--VVAIG 90 (258)
T ss_pred ccHHHHHHHHHHCCCCEEEEeCC-CHHHHHHHHHHHHhCCCEEEEEEeCcCcccc-CCHHHHHHHHHhccCCC--EEEEe
Confidence 45666658888889888777665 477777777766543 112211111 12344556666654333 44557
Q ss_pred cccCcCCch-hHHHHH----HHHHHHHHHcCCCeEEeh
Q 010627 261 DLGMEIPIE-KIFLAQ----KVMIYKCNIQGKPVVTAT 293 (505)
Q Consensus 261 DLg~e~~~~-~v~~~q----k~Ii~~~~~~gkpvi~AT 293 (505)
..|.+.... .-...| ++.++.|.++++|+++-+
T Consensus 91 EiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~ 128 (258)
T PRK10425 91 ECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHC 128 (258)
T ss_pred eeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 778776531 123344 567888999999999754
No 455
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=35.14 E-value=1.2e+02 Score=31.29 Aligned_cols=45 Identities=9% Similarity=0.050 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcC
Q 010627 27 SRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTG 71 (505)
Q Consensus 27 ~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~ 71 (505)
..+.+.+++.+++|.+-.-+.-||-+.+++.+.-+.+-+.+...|
T Consensus 84 g~~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~g 128 (284)
T PRK09195 84 HEKFDDIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFD 128 (284)
T ss_pred CCCHHHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 347999999999999999999999999998777777777776666
No 456
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=35.07 E-value=1.2e+02 Score=31.13 Aligned_cols=46 Identities=17% Similarity=0.228 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCC
Q 010627 27 SRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGI 72 (505)
Q Consensus 27 ~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~ 72 (505)
+.+.|.+++.+++|.+-.-+.-||-+.|++.+.-+.+-+.+...|.
T Consensus 87 g~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv 132 (286)
T PRK08610 87 GSSFEKCKEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGV 132 (286)
T ss_pred CCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 4479999999999999999999999999987777777777776663
No 457
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=34.68 E-value=6.4e+02 Score=27.54 Aligned_cols=244 Identities=14% Similarity=0.137 Sum_probs=120.6
Q ss_pred eEEEEecCCCeeEEeecCCCCcEEecCCCEEEEEecCCCCCCccEEEecchhhhcccCCCCEEEEeCCeEEEEEEEEeee
Q 010627 74 CAVMLDTKGPEIRTGFLKDGKPIQLKQGQEITISTDYTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVK 153 (505)
Q Consensus 74 v~i~~Dl~GpkiR~g~~~~~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~ 153 (505)
.+.++.-.||..++|.+ ..+..|..+-... ...++. ...+.+ .=...+++|+.|..-+..+.+.|-
T Consensus 29 ~g~~~~~~g~~~~ige~-----~~i~~~~~~~eV~--~~~~~~-~~~~~~-~~~~gi~~g~~v~~~~~~~~v~vg----- 94 (432)
T PRK06793 29 QEQFFVAKGPKAKIGDV-----CFVGEHNVLCEVI--AIEKEN-NMLLPF-EQTEKVCYGDSVTLIAEDVVIPRG----- 94 (432)
T ss_pred EEEEEEEEcCCCCcCCE-----EEECCCCEEEEEE--EecCCc-EEEEEc-cCccCCCCCCEEEECCCccEEEcC-----
Confidence 46777778888887755 2232222110000 011111 222222 224678899999987766655442
Q ss_pred CCeEEEEEeeC-ceecCCCCcccCC--ccccCCCCChhcHHHHHhcccccCC-------------CEEEEcCCCChhHHH
Q 010627 154 AGLVKCRCENS-AMLGERKNVNLPG--VIVDLPTLTEKDKEDILKWGIPNQI-------------DMIALSFVRKGSDLV 217 (505)
Q Consensus 154 ~~~i~~~v~~g-G~l~s~Kgvnlp~--~~~~l~~lte~D~~di~~~al~~g~-------------d~V~~sfV~sa~dv~ 217 (505)
+.+.-+|+++ |.--..++...+. .++.-|++..-++..+ ...++.|+ -+.++.-..+.....
T Consensus 95 -~~~lGrV~d~~G~piD~~~~~~~~~~~~i~~~~~~~~~r~~i-~~~l~TGiraID~ll~I~~Gqri~I~G~sG~GKTtL 172 (432)
T PRK06793 95 -NHLLGKVLSANGEVLNEEAENIPLQKIKLDAPPIHAFEREEI-TDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTL 172 (432)
T ss_pred -HhhccCEECcCCccCCCCCCCCCcccccccCCCCCchheech-hhccCCCCEEEeccceecCCcEEEEECCCCCChHHH
Confidence 3455566655 5544444322211 1233344444444444 33333332 222222222222221
Q ss_pred HHHHHHhccCCCceEEEEe-cCHHHH-hcHHHHHhcC---C-eeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEE
Q 010627 218 GVRKLLGGHAKNILLMSKV-ENQEGV-ANFDDILANS---D-AFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVT 291 (505)
Q Consensus 218 ~v~~~l~~~~~~~~IiakI-Et~~av-~nldeI~~~s---D-gImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ 291 (505)
++.+++.......+|+-| |...-+ +.+...+... . .++++..|-..-+ ....+.+...+.+.-+..|++|.+
T Consensus 173 -l~~Ia~~~~~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~-r~ra~~~a~~iAEyfr~~G~~VLl 250 (432)
T PRK06793 173 -LGMIAKNAKADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLM-QLRAAKLATSIAEYFRDQGNNVLL 250 (432)
T ss_pred -HHHHhccCCCCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHH-HHHHHHHHHHHHHHHHHcCCcEEE
Confidence 233333333344566655 332222 2334344321 1 3455555543211 126677777888888889999988
Q ss_pred ehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhc
Q 010627 292 ATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAES 352 (505)
Q Consensus 292 ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~ 352 (505)
+|+||.....+-| | +.. +.+|...+.||.-....+.++++.+-+
T Consensus 251 ---ilDslTr~a~A~r-e---isl----------~~~e~p~~G~~~~~~s~l~~L~ERag~ 294 (432)
T PRK06793 251 ---MMDSVTRFADARR-S---VDI----------AVKELPIGGKTLLMESYMKKLLERSGK 294 (432)
T ss_pred ---EecchHHHHHHHH-H---HHH----------HhcCCCCCCeeeeeeccchhHHHHhcc
Confidence 7888766444422 1 221 236777677777665667888887765
No 458
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=34.68 E-value=1.4e+02 Score=27.38 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCCe
Q 010627 30 VPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGIL 73 (505)
Q Consensus 30 ~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~~ 73 (505)
.+.+++++++|++.+-+....++..++.+.++.+++..+.++.+
T Consensus 15 ~~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~~~~~~~~ 58 (196)
T cd00564 15 LEVVEAALKGGVTLVQLREKDLSARELLELARALRELCRKYGVP 58 (196)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCe
Confidence 57799999999999999988888888888888888776555544
No 459
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=34.57 E-value=1.9e+02 Score=25.12 Aligned_cols=76 Identities=18% Similarity=0.159 Sum_probs=52.1
Q ss_pred hHHHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHh--cCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEE
Q 010627 214 SDLVGVRKLLGGHAKNILLMSKVENQEGVANFDDILA--NSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVT 291 (505)
Q Consensus 214 ~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~--~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ 291 (505)
--+..+++++.+.|-+..+.+ -++.++++.+. ..|.|++++ .+...++.+-+.|...|+|+.+
T Consensus 16 lla~k~k~~~~e~gi~~~i~a-----~~~~e~~~~~~~~~~DvIll~P----------Qi~~~~~~i~~~~~~~~ipv~~ 80 (104)
T PRK09590 16 MMAKKTTEYLKEQGKDIEVDA-----ITATEGEKAIAAAEYDLYLVSP----------QTKMYFKQFEEAGAKVGKPVVQ 80 (104)
T ss_pred HHHHHHHHHHHHCCCceEEEE-----ecHHHHHHhhccCCCCEEEECh----------HHHHHHHHHHHHhhhcCCCEEE
Confidence 346677888888776644443 24555666554 369999875 7888889999999999999975
Q ss_pred ehhhhHhhhcCCCCChH
Q 010627 292 ATQMLESMIKSPRPTRA 308 (505)
Q Consensus 292 ATqmLeSM~~~~~ptra 308 (505)
++.....|.|-.+
T Consensus 81 ----I~~~~Y~~~~~~~ 93 (104)
T PRK09590 81 ----IPPQAYIPIPMGI 93 (104)
T ss_pred ----eCHHHcCCCccCH
Confidence 3334455555443
No 460
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=34.55 E-value=2.4e+02 Score=28.72 Aligned_cols=87 Identities=11% Similarity=0.024 Sum_probs=54.4
Q ss_pred HHHHHhccCCCceEEEEecCHHHHhcHHHHHhc--CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhh
Q 010627 219 VRKLLGGHAKNILLMSKVENQEGVANFDDILAN--SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQML 296 (505)
Q Consensus 219 v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~--sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmL 296 (505)
+++.|.....-...+..+-++... |++.. -|.++|.- |=+.-.+..+. .++.+++..|.+.++
T Consensus 9 lk~~L~~G~~~~G~~~~~~sp~~~----E~~a~~GfD~v~iD~-----EHg~~~~~~l~-~~i~a~~~~g~~~lV----- 73 (267)
T PRK10128 9 FKEGLRKGEVQIGLWLSSTTSYMA----EIAATSGYDWLLIDG-----EHAPNTIQDLY-HQLQAIAPYASQPVI----- 73 (267)
T ss_pred HHHHHHcCCceEEEEecCCCcHHH----HHHHHcCCCEEEEcc-----ccCCCCHHHHH-HHHHHHHhcCCCeEE-----
Confidence 566665422223466666666544 55554 49999941 33333344443 577788899998876
Q ss_pred HhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 297 ESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 297 eSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
.-|.+. -..+..++..|+++||+-
T Consensus 74 ----Rvp~~~---~~~i~r~LD~GA~GIivP 97 (267)
T PRK10128 74 ----RPVEGS---KPLIKQVLDIGAQTLLIP 97 (267)
T ss_pred ----ECCCCC---HHHHHHHhCCCCCeeEec
Confidence 333443 356678888999999994
No 461
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.50 E-value=54 Score=28.50 Aligned_cols=29 Identities=17% Similarity=0.445 Sum_probs=23.0
Q ss_pred ecchhhhcccCCCCEEEEeCCeEEEEEEEE
Q 010627 121 MSYKKLAVDVQPGSVILCSDGTISFTVLEC 150 (505)
Q Consensus 121 v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v 150 (505)
++++. ...+++||+|.+..+++..+|+.+
T Consensus 26 l~d~k-rr~ik~GD~IiF~~~~l~v~V~~v 54 (111)
T COG4043 26 LADPK-RRQIKPGDKIIFNGDKLKVEVIDV 54 (111)
T ss_pred ecCHh-hcCCCCCCEEEEcCCeeEEEEEEE
Confidence 44443 477899999999999999999854
No 462
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=34.40 E-value=1.3e+02 Score=29.50 Aligned_cols=72 Identities=21% Similarity=0.149 Sum_probs=44.2
Q ss_pred hcccccCCCEEEEcCCCC-----hhHHHHHHHHHhccCCCceEEEE--ecCHHHHhcHHHHHhc--CCeeEEecCcccCc
Q 010627 195 KWGIPNQIDMIALSFVRK-----GSDLVGVRKLLGGHAKNILLMSK--VENQEGVANFDDILAN--SDAFMVARGDLGME 265 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~s-----a~dv~~v~~~l~~~~~~~~Iiak--IEt~~av~nldeI~~~--sDgImIaRgDLg~e 265 (505)
+...+.|+|+|.++-+.. .-+...++++.... ++++++- |-++ +++.++++. +||+|+||.-..-.
T Consensus 156 ~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~--~~pvia~GGi~~~---~di~~~l~~~g~dgv~vg~al~~~~ 230 (243)
T cd04731 156 KEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSAV--NIPVIASGGAGKP---EHFVEAFEEGGADAALAASIFHFGE 230 (243)
T ss_pred HHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCCEEEeCCCCCH---HHHHHHHHhCCCCEEEEeHHHHcCC
Confidence 667788999999976543 11233334433322 4555552 4443 344555554 79999999988777
Q ss_pred CCchhH
Q 010627 266 IPIEKI 271 (505)
Q Consensus 266 ~~~~~v 271 (505)
++++++
T Consensus 231 ~~~~~~ 236 (243)
T cd04731 231 YTIAEL 236 (243)
T ss_pred CCHHHH
Confidence 776653
No 463
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=34.34 E-value=93 Score=31.43 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=41.0
Q ss_pred HHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEecCCCee
Q 010627 31 PMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGILCAVMLDTKGPEI 85 (505)
Q Consensus 31 ~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~Gpki 85 (505)
+..++|+++|+++.=+|+.-...++..++...++...+.++.| |.+|+.-|++
T Consensus 29 ~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~~~p--lsIDT~~~~v 81 (261)
T PRK07535 29 KLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVVDVP--LCIDSPNPAA 81 (261)
T ss_pred HHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhCCCC--EEEeCCCHHH
Confidence 4556789999999999998666677788888888776666666 7888876654
No 464
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=34.31 E-value=40 Score=34.33 Aligned_cols=33 Identities=30% Similarity=0.375 Sum_probs=29.3
Q ss_pred HhcCCcEEEEEcCCchHHHHHHhh----CCCCcEEEE
Q 010627 386 NSARATLILVLTRGGSTAKLVAKY----RPGMPILSV 418 (505)
Q Consensus 386 ~~~~a~~Ivv~T~sG~ta~~ls~~----RP~~pIiav 418 (505)
.+..++.+++-|++|+||-.+|-- .|..+.+.+
T Consensus 162 ~~~r~DGliVsTPTGSTAY~lSAGGPIv~P~l~ai~l 198 (281)
T COG0061 162 ESFRGDGLIVSTPTGSTAYNLSAGGPILHPGLDAIQL 198 (281)
T ss_pred EEEecCEEEEEcCCcHHHHhhhcCCCccCCCCCeEEE
Confidence 346899999999999999999986 688999999
No 465
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=34.27 E-value=4.7e+02 Score=28.05 Aligned_cols=121 Identities=18% Similarity=0.253 Sum_probs=66.2
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCc
Q 010627 277 VMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDY 356 (505)
Q Consensus 277 ~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 356 (505)
-+...|+..|.|+.+- .|..+-...+.+.-..|++-+... ....++.+.+.+++++ +.++..
T Consensus 127 alA~~aa~~Gi~~~Iv-----------vP~~~~~~K~~~ir~~GAeVi~~~------~~~~~a~~~a~~~a~~-~g~~~v 188 (396)
T TIGR03528 127 GVAWAANQLGQKSVVY-----------MPKGSAQIRLENIRAEGAECTITD------LNYDDAVRLAWKMAQE-NGWVMV 188 (396)
T ss_pred HHHHHHHHcCCCEEEE-----------EeCCCcHHHHHHHHhcCCEEEEEC------CCHHHHHHHHHHHHHh-cCcEee
Confidence 4567899999998763 233333355677788999877663 2345777777776654 221111
Q ss_pred hhh-HHhhhhCCCCCCCchhhHHHHHHHHHHhcC------CcEEEEEcCCchHHHHHHh-----hCCCCc-EEEE
Q 010627 357 GDV-FKRVMQHSPVPMSPLESLASSAVRTANSAR------ATLILVLTRGGSTAKLVAK-----YRPGMP-ILSV 418 (505)
Q Consensus 357 ~~~-~~~~~~~~~~~~~~~~~ia~~av~~a~~~~------a~~Ivv~T~sG~ta~~ls~-----~RP~~p-Iiav 418 (505)
... ++.. .. .+....+-...-+.++..+++ .+.||+.+-+|.++-.++. ++|..| |+++
T Consensus 189 ~~~~~~~~--~~-~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~V 260 (396)
T TIGR03528 189 QDTAWEGY--EK-IPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIV 260 (396)
T ss_pred cccccccc--cc-CchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEE
Confidence 100 0000 00 011111222334455555553 6889998888876544433 366765 7777
No 466
>PLN02535 glycolate oxidase
Probab=34.23 E-value=3.1e+02 Score=29.26 Aligned_cols=96 Identities=18% Similarity=0.205 Sum_probs=53.4
Q ss_pred CChhHHHHHHHHHhccCCCceEEEE-ecCHHHHhcHHHHHhc-CCeeEEe-cCcccCcCCchhHHHHHHHHHHHHHH--c
Q 010627 211 RKGSDLVGVRKLLGGHAKNILLMSK-VENQEGVANFDDILAN-SDAFMVA-RGDLGMEIPIEKIFLAQKVMIYKCNI--Q 285 (505)
Q Consensus 211 ~sa~dv~~v~~~l~~~~~~~~Iiak-IEt~~av~nldeI~~~-sDgImIa-RgDLg~e~~~~~v~~~qk~Ii~~~~~--~ 285 (505)
-+-++++.+++.. +.+|+.| |-+++-.. ...+. +|+|.+. .| |-.++.. +.....+.+...+ .
T Consensus 210 ~tW~~i~~lr~~~-----~~PvivKgV~~~~dA~---~a~~~GvD~I~vsn~G--Gr~~d~~--~~t~~~L~ev~~av~~ 277 (364)
T PLN02535 210 LSWKDIEWLRSIT-----NLPILIKGVLTREDAI---KAVEVGVAGIIVSNHG--ARQLDYS--PATISVLEEVVQAVGG 277 (364)
T ss_pred CCHHHHHHHHhcc-----CCCEEEecCCCHHHHH---HHHhcCCCEEEEeCCC--cCCCCCC--hHHHHHHHHHHHHHhc
Confidence 3567777777643 3567777 55554432 22222 6999884 12 2222211 1111222222222 2
Q ss_pred CCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccC
Q 010627 286 GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGET 330 (505)
Q Consensus 286 gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Et 330 (505)
..|+|...-+- --.|+..++..|+|++++..--
T Consensus 278 ~ipVi~dGGIr------------~g~Dv~KALalGA~aV~vGr~~ 310 (364)
T PLN02535 278 RVPVLLDGGVR------------RGTDVFKALALGAQAVLVGRPV 310 (364)
T ss_pred CCCEEeeCCCC------------CHHHHHHHHHcCCCEEEECHHH
Confidence 58888755433 3579999999999999986443
No 467
>PRK06801 hypothetical protein; Provisional
Probab=34.12 E-value=2.1e+02 Score=29.38 Aligned_cols=105 Identities=12% Similarity=0.124 Sum_probs=65.8
Q ss_pred CCceEEEEecCHHHHhcHHHHHhc-CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCC--C
Q 010627 228 KNILLMSKVENQEGVANFDDILAN-SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSP--R 304 (505)
Q Consensus 228 ~~~~IiakIEt~~av~nldeI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~--~ 304 (505)
..+++.-...+..-++.+++-++. .+.||+.- -.+|.++-...-+++.+.|+.+|.+|=..=..+-.....+ .
T Consensus 73 ~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~----S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~ 148 (286)
T PRK06801 73 HDIPVVLNLDHGLHFEAVVRALRLGFSSVMFDG----STLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYG 148 (286)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCcEEEEcC----CCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccC
Confidence 356788777776555555554443 58999943 2457788888889999999999998722211121111100 0
Q ss_pred C----ChHHHHHHHHHH-HcCCceeeecccCCCCCCH
Q 010627 305 P----TRAEATDVANAV-LDGTDCVMLSGETAAGAYP 336 (505)
Q Consensus 305 p----traEv~Dv~nav-~~G~D~imLs~Eta~G~yP 336 (505)
+ ......+...++ .-|+|++-++-=|+.|+|+
T Consensus 149 ~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~ 185 (286)
T PRK06801 149 EADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYK 185 (286)
T ss_pred CcccccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCC
Confidence 0 011123334455 5799999999999999996
No 468
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=34.12 E-value=1.2e+02 Score=31.86 Aligned_cols=52 Identities=19% Similarity=0.232 Sum_probs=36.4
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHH
Q 010627 14 KPKTKIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRT 65 (505)
Q Consensus 14 ~r~tkIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~ 65 (505)
.+++|+.+-+=|...+.+.++...++|++++|+-+.-...+...+.++.+|+
T Consensus 75 ~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~ 126 (337)
T PRK08195 75 VKQAKIAALLLPGIGTVDDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARE 126 (337)
T ss_pred CCCCEEEEEeccCcccHHHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHH
Confidence 4578888755576667899999999999999996633333444444544443
No 469
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=34.01 E-value=2e+02 Score=23.43 Aligned_cols=75 Identities=13% Similarity=0.158 Sum_probs=38.6
Q ss_pred cEEecCCCEEEEEecCCCCCCccEEEe-cchhhhcccCCCCEEEEeCCeEEE-EEEEE---eeeCCeEEEEEeeC--cee
Q 010627 95 PIQLKQGQEITISTDYTIKGDENMICM-SYKKLAVDVQPGSVILCSDGTISF-TVLEC---NVKAGLVKCRCENS--AML 167 (505)
Q Consensus 95 ~i~l~~G~~v~l~~~~~~~~~~~~i~v-~~~~~~~~v~~Gd~I~idDG~i~l-~V~~v---~~~~~~i~~~v~~g--G~l 167 (505)
...+.+|+.++|.+.-...-.....+. |...+ ..-..+......+|.+.+ .+..+ ..+.+...|.+.|+ |.+
T Consensus 8 ~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l-~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~ 86 (95)
T cd05722 8 DIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLL-NLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSI 86 (95)
T ss_pred CeEEcCCCCEEEeeecccCCCCEEEEEECCeEC-ccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcE
Confidence 466778999999876211112223332 22222 111112244456675443 23210 23567899999998 777
Q ss_pred cCC
Q 010627 168 GER 170 (505)
Q Consensus 168 ~s~ 170 (505)
.++
T Consensus 87 ~s~ 89 (95)
T cd05722 87 VSR 89 (95)
T ss_pred EEe
Confidence 654
No 470
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=33.92 E-value=3e+02 Score=28.28 Aligned_cols=98 Identities=11% Similarity=0.115 Sum_probs=58.5
Q ss_pred HHHHHhcccccCCCEEEEc------CCCChhHHHHH-HHHHhccCCCceEEEEec---CHHHHhcHHHHHhc-CCeeEEe
Q 010627 190 KEDILKWGIPNQIDMIALS------FVRKGSDLVGV-RKLLGGHAKNILLMSKVE---NQEGVANFDDILAN-SDAFMVA 258 (505)
Q Consensus 190 ~~di~~~al~~g~d~V~~s------fV~sa~dv~~v-~~~l~~~~~~~~IiakIE---t~~av~nldeI~~~-sDgImIa 258 (505)
.+.+.+|.++.|+|+|++. +--|.++=.++ +...+..+.++++|+-+= |.++++....--+. +||+|+-
T Consensus 27 ~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v 106 (299)
T COG0329 27 LRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVV 106 (299)
T ss_pred HHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3344488899999999763 33344444444 333444567788999773 44555544443333 6999986
Q ss_pred cCcccCcCCchhHHHHHHHHHHHHHHcCCCeEE
Q 010627 259 RGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVT 291 (505)
Q Consensus 259 RgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ 291 (505)
+-..- ..+.+.+..--+.|.+++ +.|+|+
T Consensus 107 ~PyY~-k~~~~gl~~hf~~ia~a~---~lPvil 135 (299)
T COG0329 107 PPYYN-KPSQEGLYAHFKAIAEAV---DLPVIL 135 (299)
T ss_pred CCCCc-CCChHHHHHHHHHHHHhc---CCCEEE
Confidence 43332 222455555555655555 899886
No 471
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=33.90 E-value=7.6e+02 Score=28.14 Aligned_cols=185 Identities=16% Similarity=0.080 Sum_probs=106.9
Q ss_pred CCChhcHHHHHhcccccCCCEEEE----------cCCCChhHHHHHHHHHhccCCCceEEEEecC--HHHHhc-----HH
Q 010627 184 TLTEKDKEDILKWGIPNQIDMIAL----------SFVRKGSDLVGVRKLLGGHAKNILLMSKVEN--QEGVAN-----FD 246 (505)
Q Consensus 184 ~lte~D~~di~~~al~~g~d~V~~----------sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt--~~av~n-----ld 246 (505)
.++..|...|....-+.|++.+=+ +|. +.++.+.+|.+- +...++++.+.+=- .-|..+ ++
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~-~e~p~e~lr~l~-~~~~~~~lqml~Rg~n~vg~~~ypddvv~ 100 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFL-GEDPWERLRELK-KAMPNTPQQMLLRGQNLLGYRHYADDVVE 100 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhcccc-CCCHHHHHHHHH-HhCCCCeEEEEecCcceeccccCcHHHHH
Confidence 578888888844445567777633 333 334555555533 23455565544411 122222 11
Q ss_pred HHHh----c-CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCe---EEehhhhHhhhcCCCCChHHHHHHHH-HH
Q 010627 247 DILA----N-SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPV---VTATQMLESMIKSPRPTRAEATDVAN-AV 317 (505)
Q Consensus 247 eI~~----~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpv---i~ATqmLeSM~~~~~ptraEv~Dv~n-av 317 (505)
+.++ . .|.+-|. | ++.++. -.+..++.++++|+.+ +..| ..|.=|.....+++. +.
T Consensus 101 ~~v~~a~~~Gid~~rif--d-----~lnd~~-~~~~ai~~ak~~G~~~~~~i~yt-------~~p~~~~~~~~~~a~~l~ 165 (593)
T PRK14040 101 RFVERAVKNGMDVFRVF--D-----AMNDPR-NLETALKAVRKVGAHAQGTLSYT-------TSPVHTLQTWVDLAKQLE 165 (593)
T ss_pred HHHHHHHhcCCCEEEEe--e-----eCCcHH-HHHHHHHHHHHcCCeEEEEEEEe-------eCCccCHHHHHHHHHHHH
Confidence 2222 1 3666554 2 222333 3456678999999974 3222 245556777777776 55
Q ss_pred HcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCchhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcCCcEEEEEc
Q 010627 318 LDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDYGDVFKRVMQHSPVPMSPLESLASSAVRTANSARATLILVLT 397 (505)
Q Consensus 318 ~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T 397 (505)
..|+|.|.+ .+|+=+-.|.++-+.++.+.++..-.+.+. . ++ ...+|.+....|.+.+|+ +|=-|
T Consensus 166 ~~Gad~i~i-~Dt~G~l~P~~~~~lv~~lk~~~~~pi~~H--~----------Hn-t~GlA~An~laAieAGa~-~vD~a 230 (593)
T PRK14040 166 DMGVDSLCI-KDMAGLLKPYAAYELVSRIKKRVDVPLHLH--C----------HA-TTGLSTATLLKAIEAGID-GVDTA 230 (593)
T ss_pred HcCCCEEEE-CCCCCCcCHHHHHHHHHHHHHhcCCeEEEE--E----------CC-CCchHHHHHHHHHHcCCC-EEEec
Confidence 679999999 699999999999999888875543212111 1 11 123566667778888988 45445
Q ss_pred CCc
Q 010627 398 RGG 400 (505)
Q Consensus 398 ~sG 400 (505)
-+|
T Consensus 231 i~g 233 (593)
T PRK14040 231 ISS 233 (593)
T ss_pred ccc
Confidence 444
No 472
>PRK08329 threonine synthase; Validated
Probab=33.88 E-value=3e+02 Score=28.80 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=30.5
Q ss_pred chhhHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhh--CCCCcEEEEeecc
Q 010627 373 PLESLASSAVRTANSARATLILVLTRGGSTAKLVAKY--RPGMPILSVVVPE 422 (505)
Q Consensus 373 ~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~ls~~--RP~~pIiav~~p~ 422 (505)
-.+.-+..++..|.+.+.+.|++.| ||++++.+|.| +-..|.+.+ +|.
T Consensus 87 fKdRga~~~i~~a~~~g~~~vv~aS-sGN~g~alA~~aa~~G~~~~v~-vp~ 136 (347)
T PRK08329 87 FKDRGTYVTVAKLKEEGINEVVIDS-SGNAALSLALYSLSEGIKVHVF-VSY 136 (347)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEC-CCcHHHHHHHHHHHcCCcEEEE-ECC
Confidence 3455566666667777777666655 78887776665 344666666 553
No 473
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=33.82 E-value=3.2e+02 Score=26.99 Aligned_cols=36 Identities=19% Similarity=0.364 Sum_probs=22.5
Q ss_pred HHHHHhcCCcEEEEEc--CCc-------hHHHHHHhhCCCCcEEEE
Q 010627 382 VRTANSARATLILVLT--RGG-------STAKLVAKYRPGMPILSV 418 (505)
Q Consensus 382 v~~a~~~~a~~Ivv~T--~sG-------~ta~~ls~~RP~~pIiav 418 (505)
+..+.+.+++.|++.+ +.| .....+.+. ...||||-
T Consensus 159 ~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~-~~ipvia~ 203 (253)
T PRK02083 159 AKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSDA-VNVPVIAS 203 (253)
T ss_pred HHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhh-CCCCEEEE
Confidence 3455677999888844 555 223334333 46899998
No 474
>PLN00011 cysteine synthase
Probab=33.70 E-value=5.5e+02 Score=26.46 Aligned_cols=121 Identities=12% Similarity=0.135 Sum_probs=66.7
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCc
Q 010627 277 VMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDY 356 (505)
Q Consensus 277 ~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 356 (505)
-+...|+.+|.|+.+. .|..+.-..+...-..|++-++...+ .+ .-+.++...++.++...++ +
T Consensus 83 alA~~a~~~G~~~~iv-----------vp~~~~~~k~~~i~~~GA~V~~~~~~--~~--~~~~~~~a~~l~~~~~~~~-~ 146 (323)
T PLN00011 83 GLACIGAARGYKVILV-----------MPSTMSLERRIILRALGAEVHLTDQS--IG--LKGMLEKAEEILSKTPGGY-I 146 (323)
T ss_pred HHHHHHHHcCCeEEEE-----------eCCCCCHHHHHHHHHcCCEEEEECCC--cC--hHHHHHHHHHHHHhCCCeE-E
Confidence 4456899999998763 23333334455666789998876432 11 2233444444443211111 1
Q ss_pred hhhHHhhhhCCCCCCCchhhHHHHHHHHHHhc--CCcEEEEEcCCchHHHH----HHhhCCCCcEEEEeec
Q 010627 357 GDVFKRVMQHSPVPMSPLESLASSAVRTANSA--RATLILVLTRGGSTAKL----VAKYRPGMPILSVVVP 421 (505)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~--~a~~Ivv~T~sG~ta~~----ls~~RP~~pIiav~~p 421 (505)
..-|. . +.++.--....+.++..+. ..++||+.+-+|.|.-- +-.++|...|+++ -|
T Consensus 147 ~~~~~-----n--~~n~~~~~~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigV-e~ 209 (323)
T PLN00011 147 PQQFE-----N--PANPEIHYRTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVV-EP 209 (323)
T ss_pred ecccc-----C--CccHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEE-ec
Confidence 11111 0 1122111233455565554 47999999999988654 4456899999999 44
No 475
>PRK05638 threonine synthase; Validated
Probab=33.60 E-value=4e+02 Score=28.87 Aligned_cols=107 Identities=14% Similarity=0.066 Sum_probs=65.9
Q ss_pred HHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccC
Q 010627 276 KVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLD 355 (505)
Q Consensus 276 k~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~ 355 (505)
..+...|+++|.|+.+- .|..+....+...-..|++-+... |. .-++++...+++++ ...+
T Consensus 125 ~alA~~aa~~G~~~~i~-----------vp~~~~~~k~~~~~~~GA~vi~v~-----~~-~~~~~~~a~~~~~~--~~~~ 185 (442)
T PRK05638 125 ASVAAYSARAGKEAFVV-----------VPRKVDKGKLIQMIAFGAKIIRYG-----ES-VDEAIEYAEELARL--NGLY 185 (442)
T ss_pred HHHHHHHHHcCCCEEEE-----------EeCCCCHHHHHHHHhcCcEEEEEC-----CC-HHHHHHHHHHHHHh--CCeE
Confidence 34566889999999763 355555556677778899988873 33 35777766665432 2111
Q ss_pred chhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhh
Q 010627 356 YGDVFKRVMQHSPVPMSPLESLASSAVRTANSARATLILVLTRGGSTAKLVAKY 409 (505)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~ls~~ 409 (505)
+-..+ ..+ ...+....-+.+++.+++.+.||+.+-+|.+..-+++.
T Consensus 186 ~~~~~-----~np---~~~eG~~t~a~Ei~eq~~pD~vv~pvG~Gg~~~Gi~~g 231 (442)
T PRK05638 186 NVTPE-----YNI---IGLEGQKTIAFELWEEINPTHVIVPTGSGSYLYSIYKG 231 (442)
T ss_pred ecCCC-----CCh---hHhhhHHHHHHHHHHHHCcCEEEEeCCchHHHHHHHHH
Confidence 11001 011 11223344455677777899999999999998655544
No 476
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=33.39 E-value=3.1e+02 Score=26.30 Aligned_cols=42 Identities=21% Similarity=0.198 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeee
Q 010627 272 FLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 326 (505)
Q Consensus 272 ~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imL 326 (505)
..+....++.++++|++|.+-|- -+.+ +...++..|+|+|+-
T Consensus 176 ~~~~~~~v~~~~~~G~~v~~wtv----------n~~~---~~~~~~~~Gvd~i~T 217 (220)
T cd08579 176 STLNKEFIRQAHQNGKKVYVWTV----------NDPD---DMQRYLAMGVDGIIT 217 (220)
T ss_pred hhcCHHHHHHHHHCCCEEEEEcC----------CCHH---HHHHHHHcCCCEEeC
Confidence 34567899999999999998761 1223 346677789999864
No 477
>PLN02623 pyruvate kinase
Probab=33.35 E-value=7.7e+02 Score=28.07 Aligned_cols=96 Identities=9% Similarity=0.183 Sum_probs=55.8
Q ss_pred cEEEecchhhhcccCCCCEEEEeCCeEEEEEEEEeeeCCeEEEEEeeCceecCCCCcccCCc----------------c-
Q 010627 117 NMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGERKNVNLPGV----------------I- 179 (505)
Q Consensus 117 ~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~~~i~~~v~~gG~l~s~Kgvnlp~~----------------~- 179 (505)
+.|++|+-.+--.| +..+++.+..+|+ .++.+.- +-|.=-+++.+.+|.. +
T Consensus 227 d~IlidDG~i~l~V-----~~~~~~~v~~~V~----~gG~L~s---~KgvNlpg~~~~lp~lTekD~~di~f~~~~~vD~ 294 (581)
T PLN02623 227 DMLLVDGGMMSLAV-----KSKTSDSVKCEVV----DGGELKS---RRHLNVRGKSATLPSITEKDWEDIKFGVENKVDF 294 (581)
T ss_pred CEEEEeCCeEEEEE-----EEEECCEEEEEEE----eceEecC---CCCCCCCCCcCCCCCCCHHHHHHHHHHHHcCCCE
Confidence 45777653322111 2234566766665 2333321 2344456677777731 0
Q ss_pred ccCCCC-ChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHh
Q 010627 180 VDLPTL-TEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLG 224 (505)
Q Consensus 180 ~~l~~l-te~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~ 224 (505)
+.+... +.+|...+.++..+.+.+...+.++++++-++.+.+++.
T Consensus 295 ialSFVr~a~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~ 340 (581)
T PLN02623 295 YAVSFVKDAQVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIT 340 (581)
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHH
Confidence 111221 456777775555566778889999999999999888763
No 478
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=33.24 E-value=1.4e+02 Score=31.15 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=42.4
Q ss_pred eEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcC
Q 010627 17 TKIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTG 71 (505)
Q Consensus 17 tkIi~TiGp~~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~ 71 (505)
..+..-+ --..+.|.+++-+++|.+-..+.-||-..|++.+.-+.+-+.+...|
T Consensus 75 VPValHL-DHg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~g 128 (307)
T PRK05835 75 IPVALHL-DHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAG 128 (307)
T ss_pred CeEEEEC-CCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 3455555 22347999999999999999999999999987777777777776666
No 479
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=33.20 E-value=1.3e+02 Score=29.99 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=44.8
Q ss_pred CCCeEEEEec-----CCCCCC-HHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHH-cCCee
Q 010627 14 KPKTKIVCTL-----GPASRS-VPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVN-TGILC 74 (505)
Q Consensus 14 ~r~tkIi~Ti-----Gp~~~~-~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~-~~~~v 74 (505)
...+|+|++- .|+.++ .+.+++|.+.|.|+.++-..--+.++..+++...+++.+. .+.|+
T Consensus 133 ~~~~kvI~S~H~f~~tP~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~~P~ 200 (253)
T PRK02412 133 EHGVKVVLSYHDFEKTPPKEEIVERLRKMESLGADIVKIAVMPQSEQDVLTLLNATREMKELYADQPL 200 (253)
T ss_pred HcCCEEEEeeCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCE
Confidence 4579999987 343222 3567888999999999998877888888888877776543 45664
No 480
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.17 E-value=1.1e+02 Score=31.21 Aligned_cols=65 Identities=14% Similarity=0.201 Sum_probs=45.3
Q ss_pred ChhcHHHHHhcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEE--EecCHHHHhcHHHHHhc-CCeeEEec
Q 010627 186 TEKDKEDILKWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMS--KVENQEGVANFDDILAN-SDAFMVAR 259 (505)
Q Consensus 186 te~D~~di~~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~Iia--kIEt~~av~nldeI~~~-sDgImIaR 259 (505)
+-.+.+++ +.+.+.|+|||.+.. -++++++++.+.+. .++.+.| =| -.+|+.++++. +|+|-++.
T Consensus 194 sv~tleea-~~A~~~gaDyI~lD~-~~~e~l~~~~~~~~---~~i~i~AiGGI----t~~ni~~~a~~Gvd~IAvg~ 261 (277)
T PRK08072 194 ETETEEQV-REAVAAGADIIMFDN-RTPDEIREFVKLVP---SAIVTEASGGI----TLENLPAYGGTGVDYISLGF 261 (277)
T ss_pred EeCCHHHH-HHHHHcCCCEEEECC-CCHHHHHHHHHhcC---CCceEEEECCC----CHHHHHHHHHcCCCEEEECh
Confidence 33456677 777889999999975 67788888887663 2333222 12 24688888887 79999864
No 481
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=33.16 E-value=42 Score=30.81 Aligned_cols=20 Identities=35% Similarity=0.405 Sum_probs=17.7
Q ss_pred HHHHHHHHHHcCCCeEEehh
Q 010627 275 QKVMIYKCNIQGKPVVTATQ 294 (505)
Q Consensus 275 qk~Ii~~~~~~gkpvi~ATq 294 (505)
...+++.-.++|+|+++||-
T Consensus 65 ~~evi~~I~~~G~PviVAtD 84 (138)
T PF04312_consen 65 RSEVIEWISEYGKPVIVATD 84 (138)
T ss_pred HHHHHHHHHHcCCEEEEEec
Confidence 46788888999999999997
No 482
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=33.12 E-value=3.2e+02 Score=27.89 Aligned_cols=113 Identities=18% Similarity=0.256 Sum_probs=71.3
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCCC-ceEEEEecCHHHHhcHHHHHhcCCeeEE--ec-CcccCcCCchh
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKN-ILLMSKVENQEGVANFDDILANSDAFMV--AR-GDLGMEIPIEK 270 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~-~~IiakIEt~~av~nldeI~~~sDgImI--aR-gDLg~e~~~~~ 270 (505)
+.+.+.|+|++++|=.- .++-..+.+.+.+.|-+ +.++|---+ -+.++.|++.++|.+- +| |==|++.+...
T Consensus 116 ~~~~~~GvdGlivpDLP-~ee~~~~~~~~~~~gi~~I~lvaPtt~---~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~ 191 (265)
T COG0159 116 RRAKEAGVDGLLVPDLP-PEESDELLKAAEKHGIDPIFLVAPTTP---DERLKKIAEAASGFIYYVSRMGVTGARNPVSA 191 (265)
T ss_pred HHHHHcCCCEEEeCCCC-hHHHHHHHHHHHHcCCcEEEEeCCCCC---HHHHHHHHHhCCCcEEEEecccccCCCcccch
Confidence 67788899999998654 34445677777766644 445543332 3678999999986654 55 55555555322
Q ss_pred HHHHHHHHHHHHHH-cCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 271 IFLAQKVMIYKCNI-QGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 271 v~~~qk~Ii~~~~~-~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
.-++.++..|+ .++|+.+-- ..-+++.+.++..+ +||+...
T Consensus 192 ---~~~~~v~~vr~~~~~Pv~vGF---------GIs~~e~~~~v~~~----ADGVIVG 233 (265)
T COG0159 192 ---DVKELVKRVRKYTDVPVLVGF---------GISSPEQAAQVAEA----ADGVIVG 233 (265)
T ss_pred ---hHHHHHHHHHHhcCCCeEEec---------CcCCHHHHHHHHHh----CCeEEEc
Confidence 24455555555 488987632 35566666666664 7777774
No 483
>PRK15108 biotin synthase; Provisional
Probab=33.10 E-value=1.1e+02 Score=32.08 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=25.1
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHhCCcEEEEec
Q 010627 16 KTKIVCTLGPASRSVPMIEKLLKAGMNVARFNF 48 (505)
Q Consensus 16 ~tkIi~TiGp~~~~~~~i~~li~~G~~~~RlN~ 48 (505)
..++++|+|+- +.+.+++|.++|++.+-+|+
T Consensus 124 ~i~v~~s~G~l--s~e~l~~LkeAGld~~n~~l 154 (345)
T PRK15108 124 GLETCMTLGTL--SESQAQRLANAGLDYYNHNL 154 (345)
T ss_pred CCEEEEeCCcC--CHHHHHHHHHcCCCEEeecc
Confidence 35678889964 59999999999999777763
No 484
>PRK11175 universal stress protein UspE; Provisional
Probab=33.08 E-value=2.9e+02 Score=27.55 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCC---------chHHHHHHhhCCCCcEEEE
Q 010627 377 LASSAVRTANSARATLILVLTRG---------GSTAKLVAKYRPGMPILSV 418 (505)
Q Consensus 377 ia~~av~~a~~~~a~~Ivv~T~s---------G~ta~~ls~~RP~~pIiav 418 (505)
.+....+.|.+.++++||+-++. |.++..+.+.-| ||++.+
T Consensus 95 ~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~~~-~pvlvv 144 (305)
T PRK11175 95 PFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRKCP-CPVLMV 144 (305)
T ss_pred cHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhcCC-CCEEEe
Confidence 35556777888999999998774 456666766554 999999
No 485
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=33.01 E-value=59 Score=30.08 Aligned_cols=96 Identities=15% Similarity=0.162 Sum_probs=57.5
Q ss_pred hcccccCCCEEEEcCCCCh------hHHHHHHHHHhccCCCceEEEE-ec--------------CHHHHhcHHHHHhc--
Q 010627 195 KWGIPNQIDMIALSFVRKG------SDLVGVRKLLGGHAKNILLMSK-VE--------------NQEGVANFDDILAN-- 251 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa------~dv~~v~~~l~~~~~~~~Iiak-IE--------------t~~av~nldeI~~~-- 251 (505)
+++.++|+++|=+++.... .++.++++++++.|-.+.-+.- .. ...+++.+.+.++.
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~ 81 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAK 81 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHH
Confidence 5567788898888765543 3477888888877644222111 11 12346666666654
Q ss_pred ---CCeeEEecC--cccCcCCc----hhHHHHHHHHHHHHHHcCCCeE
Q 010627 252 ---SDAFMVARG--DLGMEIPI----EKIFLAQKVMIYKCNIQGKPVV 290 (505)
Q Consensus 252 ---sDgImIaRg--DLg~e~~~----~~v~~~qk~Ii~~~~~~gkpvi 290 (505)
++.+.+..| +....... +.+...-+++.+.|.++|.-+.
T Consensus 82 ~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~ 129 (213)
T PF01261_consen 82 RLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIA 129 (213)
T ss_dssp HHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred HhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEE
Confidence 367777766 33333332 3555566778888888885544
No 486
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=32.99 E-value=5.9e+02 Score=26.61 Aligned_cols=103 Identities=12% Similarity=0.050 Sum_probs=57.6
Q ss_pred cCCCeEEehhhhHhhhcCC----CCChHHHHHHHHHHHcCCceeeecc------cCCCCCCHHHHHHHHHHHHHHHhccc
Q 010627 285 QGKPVVTATQMLESMIKSP----RPTRAEATDVANAVLDGTDCVMLSG------ETAAGAYPEVAVRTMAQICVEAESTL 354 (505)
Q Consensus 285 ~gkpvi~ATqmLeSM~~~~----~ptraEv~Dv~nav~~G~D~imLs~------Eta~G~yP~~~V~~m~~i~~~aE~~~ 354 (505)
.+.|+|+. +-.+. .-.-+|...++..+.+++|++.|+- .-..+.+|-...+.++.+-.......
T Consensus 136 ~~~pvivs------I~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~ 209 (344)
T PRK05286 136 RGIPLGIN------IGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELH 209 (344)
T ss_pred CCCcEEEE------EecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccc
Confidence 67898873 32221 1245677777888888999999851 12237888777777777665543110
Q ss_pred CchhhHHhhhhCCCCCCCchhhHHHHHHHHHHhcCCcEEEEEcCC
Q 010627 355 DYGDVFKRVMQHSPVPMSPLESLASSAVRTANSARATLILVLTRG 399 (505)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~s 399 (505)
.....+- +..+ ..+..+ ....++.+.+.++++|+++.++
T Consensus 210 ~~~PV~v---Klsp-~~~~~~--~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 210 GYVPLLV---KIAP-DLSDEE--LDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred cCCceEE---EeCC-CCCHHH--HHHHHHHHHHhCCcEEEEeCCc
Confidence 0001111 1121 111111 3334555677899999998753
No 487
>PRK06801 hypothetical protein; Provisional
Probab=32.79 E-value=1.6e+02 Score=30.22 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCC
Q 010627 27 SRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGI 72 (505)
Q Consensus 27 ~~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~ 72 (505)
+.+.+.+++-+++|.+.+-+.-||-+.++..+.-+.+++..+.+|.
T Consensus 84 ~~~~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv 129 (286)
T PRK06801 84 GLHFEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGV 129 (286)
T ss_pred CCCHHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 4478999999999999999999999999988888888888877774
No 488
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=32.68 E-value=3.9e+02 Score=27.55 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCchHHHHH----HhhCCCCcEEEE
Q 010627 389 RATLILVLTRGGSTAKLV----AKYRPGMPILSV 418 (505)
Q Consensus 389 ~a~~Ivv~T~sG~ta~~l----s~~RP~~pIiav 418 (505)
..+.||+..-+|.|+--+ ..++|.++|+++
T Consensus 183 ~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigV 216 (331)
T PRK03910 183 DFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGV 216 (331)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEE
Confidence 378999999999998544 445799999998
No 489
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=32.50 E-value=5e+02 Score=26.37 Aligned_cols=95 Identities=14% Similarity=0.079 Sum_probs=55.0
Q ss_pred HHHHHhc--CCeeEEecCccc--CcCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHH-HHHHHHc
Q 010627 245 FDDILAN--SDAFMVARGDLG--MEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATD-VANAVLD 319 (505)
Q Consensus 245 ldeI~~~--sDgImIaRgDLg--~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~D-v~nav~~ 319 (505)
++..++. +|||+++ |--| ..+..++-..+.+..++.+. ...|+++.+- ..+-.|..+ ...|...
T Consensus 27 i~~~i~~G~v~gi~~~-GstGE~~~Lt~eEr~~~~~~~~~~~~-~~~pvi~gv~---------~~~t~~~i~la~~a~~~ 95 (290)
T TIGR00683 27 IRHNIDKMKVDGLYVG-GSTGENFMLSTEEKKEIFRIAKDEAK-DQIALIAQVG---------SVNLKEAVELGKYATEL 95 (290)
T ss_pred HHHHHhCCCcCEEEEC-CcccccccCCHHHHHHHHHHHHHHhC-CCCcEEEecC---------CCCHHHHHHHHHHHHHh
Confidence 4444443 7899885 3222 23455555555555555542 2367775431 223344444 3446888
Q ss_pred CCceeeecccCCCCCCHHHHHHHHHHHHHHH
Q 010627 320 GTDCVMLSGETAAGAYPEVAVRTMAQICVEA 350 (505)
Q Consensus 320 G~D~imLs~Eta~G~yP~~~V~~m~~i~~~a 350 (505)
|+|++|+..=.-...-+-+.+.....++.++
T Consensus 96 Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~ 126 (290)
T TIGR00683 96 GYDCLSAVTPFYYKFSFPEIKHYYDTIIAET 126 (290)
T ss_pred CCCEEEEeCCcCCCCCHHHHHHHHHHHHhhC
Confidence 9999999653333333577888888888765
No 490
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=32.49 E-value=1.8e+02 Score=29.02 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=40.2
Q ss_pred CeEEEEecCCCC-CCHHHHHHHHHhCCcEEEEecCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEecC
Q 010627 16 KTKIVCTLGPAS-RSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLNNLRTAMVNTGILCAVMLDTK 81 (505)
Q Consensus 16 ~tkIi~TiGp~~-~~~~~i~~li~~G~~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~ 81 (505)
+..+-+|+|..+ ...+.++++.+.|.+.|.+.+...+.++-.+.++.+|++ .+..+.+++|-.
T Consensus 72 ~v~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~d~~~v~~vr~~---~g~~~~l~vDaN 135 (263)
T cd03320 72 RIPVNALLPAGDAAALGEAKAAYGGGYRTVKLKVGATSFEEDLARLRALREA---LPADAKLRLDAN 135 (263)
T ss_pred CcceeEEecCCCHHHHHHHHHHHhCCCCEEEEEECCCChHHHHHHHHHHHHH---cCCCCeEEEeCC
Confidence 445566776543 233567778889999999998766666556667777654 443344555543
No 491
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=32.46 E-value=3.6e+02 Score=28.87 Aligned_cols=121 Identities=18% Similarity=0.219 Sum_probs=66.2
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccCc
Q 010627 277 VMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLDY 356 (505)
Q Consensus 277 ~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 356 (505)
-+...|+..|.|+.+- .|..+.-..+.+.-..|++.+...+ .+-++++.+.++.++- .+++.
T Consensus 130 alA~~a~~~G~~~~Iv-----------vp~~~~~~k~~~i~~~GA~Vi~v~~------~~~~~~~~a~~~~~~~-g~~~v 191 (399)
T PRK08206 130 GVAWAAQQLGQKAVIY-----------MPKGSSEERVDAIRALGAECIITDG------NYDDSVRLAAQEAQEN-GWVVV 191 (399)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCC------CHHHHHHHHHHHHHHc-CCEEe
Confidence 4567889999998763 3444444556677789999666542 3456777766655431 11110
Q ss_pred hh-hHHhhhhCCCCCCCchhhHHHHHHHHHHhcC-----CcEEEEEcCCchHHHHHHhh-----CC-CCcEEEE
Q 010627 357 GD-VFKRVMQHSPVPMSPLESLASSAVRTANSAR-----ATLILVLTRGGSTAKLVAKY-----RP-GMPILSV 418 (505)
Q Consensus 357 ~~-~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~-----a~~Ivv~T~sG~ta~~ls~~-----RP-~~pIiav 418 (505)
.. .+.. ....+....+-...-+.++..+++ .+.||+.+-+|.++--++++ ++ ...|+++
T Consensus 192 ~~~~~~~---~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~V 262 (399)
T PRK08206 192 QDTAWEG---YEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVV 262 (399)
T ss_pred cCccccC---cccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEE
Confidence 00 0000 000001111222334445555543 68999999999887665543 24 4557777
No 492
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=32.26 E-value=3.7e+02 Score=26.87 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=29.2
Q ss_pred HHHHhcCCcEEEEEcCCchHHHHHHhhCCCCcEEEE
Q 010627 383 RTANSARATLILVLTRGGSTAKLVAKYRPGMPILSV 418 (505)
Q Consensus 383 ~~a~~~~a~~Ivv~T~sG~ta~~ls~~RP~~pIiav 418 (505)
.+..+.+|++|++-..+...++.+++. +..|+++.
T Consensus 163 ~ay~~AGAd~i~~e~~~~e~~~~i~~~-~~~P~~~~ 197 (240)
T cd06556 163 LAYAPAGADLIVMECVPVELAKQITEA-LAIPLAGI 197 (240)
T ss_pred HHHHHcCCCEEEEcCCCHHHHHHHHHh-CCCCEEEE
Confidence 334578999999998888889999885 77999998
No 493
>COG0051 RpsJ Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]
Probab=32.22 E-value=74 Score=27.82 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=32.2
Q ss_pred cEEEEecCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEecCCC
Q 010627 42 NVARFNFSHGSHEYHQETLNNLRTAMVNTGILCAVMLDTKGP 83 (505)
Q Consensus 42 ~~~RlN~shg~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~Gp 83 (505)
..+||-+.-.++....+..+.|.+.++.+| ++++||
T Consensus 4 ~kirI~L~s~d~~~LD~~~~~Ive~akrtg------~~v~GP 39 (104)
T COG0051 4 QKIRIRLKSFDHRLLDQVCREIVETAKRTG------ADVKGP 39 (104)
T ss_pred ceEEEEEecCCHHHHHHHHHHHHHHHHHhC------CeeeCC
Confidence 478999999999999999999999999998 567777
No 494
>PRK08526 threonine dehydratase; Provisional
Probab=32.20 E-value=5.8e+02 Score=27.39 Aligned_cols=116 Identities=15% Similarity=0.207 Sum_probs=68.8
Q ss_pred HHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeecccCCCCCCHHHHHHHHHHHHHHHhcccC
Q 010627 276 KVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPEVAVRTMAQICVEAESTLD 355 (505)
Q Consensus 276 k~Ii~~~~~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~ 355 (505)
.-+...|+..|.|+.+- .|..+....+...-..|++-++. |...-++++...+++++- . ..
T Consensus 81 ~avA~aa~~~Gi~~~Iv-----------mP~~~p~~k~~~~r~~GA~Vv~~------g~~~~~a~~~a~~~a~~~-g-~~ 141 (403)
T PRK08526 81 QGVAISAKKFGIKAVIV-----------MPEATPLLKVSGTKALGAEVILK------GDNYDEAYAFALEYAKEN-N-LT 141 (403)
T ss_pred HHHHHHHHHcCCCEEEE-----------EcCCCCHHHHHHHHhCCCEEEEE------CCCHHHHHHHHHHHHHhc-C-CE
Confidence 35566899999998663 24444444556667789988764 234567777766654331 1 11
Q ss_pred chhhHHhhhhCCCCCCCchhhHHHHHHHHHHhc-CCcEEEEEcCCchHHHH----HHhhCCCCcEEEE
Q 010627 356 YGDVFKRVMQHSPVPMSPLESLASSAVRTANSA-RATLILVLTRGGSTAKL----VAKYRPGMPILSV 418 (505)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~-~a~~Ivv~T~sG~ta~~----ls~~RP~~pIiav 418 (505)
|-.-|. . + .....-..-+.++..++ +.++||+..-+|.++-- +...+|.+.|+++
T Consensus 142 ~v~p~~-----~--~-~~i~G~gtia~EI~eq~~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigV 201 (403)
T PRK08526 142 FIHPFE-----D--E-EVMAGQGTIALEMLDEISDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGV 201 (403)
T ss_pred eeCCCC-----C--H-HHHhhhHHHHHHHHHhcCCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 111111 0 0 11111122345555555 57999999999888654 4445799999999
No 495
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=32.17 E-value=3.5e+02 Score=26.11 Aligned_cols=48 Identities=10% Similarity=0.188 Sum_probs=35.0
Q ss_pred hcccccCCCEEEEcCCCChhHHHHHHHHHhccCCCceEEEEecCHHHH
Q 010627 195 KWGIPNQIDMIALSFVRKGSDLVGVRKLLGGHAKNILLMSKVENQEGV 242 (505)
Q Consensus 195 ~~al~~g~d~V~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av 242 (505)
+...+.|+|++.+.-.-..+-++.+.+...+.+..+.+++..=++.+.
T Consensus 70 ~~~~~~gad~vTvh~~~g~~~l~~~~~~~~~~~~~v~~v~~lss~~~~ 117 (213)
T TIGR01740 70 ESKIKQGADMVNVHGVAGSESVEAAKEAASEGGRGLLAVTELTSMGSL 117 (213)
T ss_pred HHHHhcCCCEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChh
Confidence 334678999999998777777888888877666556666666665443
No 496
>PRK14852 hypothetical protein; Provisional
Probab=32.15 E-value=1.2e+02 Score=36.57 Aligned_cols=70 Identities=16% Similarity=0.093 Sum_probs=49.1
Q ss_pred HHHHHHHHhccCCCceEEEEecCHHHHhcHHHHHhcCCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEehh
Q 010627 216 LVGVRKLLGGHAKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQ 294 (505)
Q Consensus 216 v~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~ATq 294 (505)
+..+++.+.+.|..+.|-+--|.. .-+|++++++-.|.|+=+-.++. ..+++.+...|+++|+|++.++-
T Consensus 388 aevaa~~l~~INP~v~I~~~~~~I-~~en~~~fl~~~DiVVDa~D~~~--------~~~rr~l~~~c~~~~IP~I~ag~ 457 (989)
T PRK14852 388 LDVMTERALSVNPFLDIRSFPEGV-AAETIDAFLKDVDLLVDGIDFFA--------LDIRRRLFNRALELGIPVITAGP 457 (989)
T ss_pred HHHHHHHHHHHCCCCeEEEEecCC-CHHHHHHHhhCCCEEEECCCCcc--------HHHHHHHHHHHHHcCCCEEEeec
Confidence 455566677778877776654443 33789999988898875432221 13677888999999999997764
No 497
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=32.14 E-value=4.5e+02 Score=27.50 Aligned_cols=123 Identities=11% Similarity=0.082 Sum_probs=0.0
Q ss_pred CCChhcHHHHH-------hcccccCCCEEEEcCCC--------Ch---------------------hHHHHHHHHHhccC
Q 010627 184 TLTEKDKEDIL-------KWGIPNQIDMIALSFVR--------KG---------------------SDLVGVRKLLGGHA 227 (505)
Q Consensus 184 ~lte~D~~di~-------~~al~~g~d~V~~sfV~--------sa---------------------~dv~~v~~~l~~~~ 227 (505)
.+|..|.+.+. +.+.++|+|+|=+.... |+ +-++++|+.+ +
T Consensus 141 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~v---g 217 (338)
T cd02933 141 ALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAI---G 217 (338)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHh---C
Q ss_pred CCceEEEEe-------------cCHHHHhcHHHHHhc-CCeeEEecCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeh
Q 010627 228 KNILLMSKV-------------ENQEGVANFDDILAN-SDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTAT 293 (505)
Q Consensus 228 ~~~~IiakI-------------Et~~av~nldeI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~~~~~gkpvi~AT 293 (505)
.+ .|..|| .-.+.++-+..+.+. .|.+=|..|...... -.......-......+.||+...
T Consensus 218 ~d-~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~----~~~~~~~~~~ik~~~~ipvi~~G 292 (338)
T cd02933 218 AD-RVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP----EDQPPDFLDFLRKAFKGPLIAAG 292 (338)
T ss_pred CC-ceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc----cccchHHHHHHHHHcCCCEEEEC
Q ss_pred hhhHhhhcCCCCChHHHHHHHHHHHcC-Cceeeec
Q 010627 294 QMLESMIKSPRPTRAEATDVANAVLDG-TDCVMLS 327 (505)
Q Consensus 294 qmLeSM~~~~~ptraEv~Dv~nav~~G-~D~imLs 327 (505)
.+- |..+ ..++..| +|+|+++
T Consensus 293 ~i~--------~~~a-----~~~l~~g~~D~V~~g 314 (338)
T cd02933 293 GYD--------AESA-----EAALADGKADLVAFG 314 (338)
T ss_pred CCC--------HHHH-----HHHHHcCCCCEEEeC
No 498
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=32.07 E-value=2.2e+02 Score=30.39 Aligned_cols=32 Identities=25% Similarity=0.435 Sum_probs=23.9
Q ss_pred HcCCCeEEehhhhHhhhcCCCCChHHHHHHHHHHHcCCceeeec
Q 010627 284 IQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 327 (505)
Q Consensus 284 ~~gkpvi~ATqmLeSM~~~~~ptraEv~Dv~nav~~G~D~imLs 327 (505)
..+.|+|....+= --.||..|+..|+|++|+.
T Consensus 287 ~~~~~vi~dGGIr------------~g~Dv~KALaLGA~aV~iG 318 (361)
T cd04736 287 ATYKPVLIDSGIR------------RGSDIVKALALGANAVLLG 318 (361)
T ss_pred HhCCeEEEeCCCC------------CHHHHHHHHHcCCCEEEEC
Confidence 3468888644322 2479999999999999984
No 499
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=32.02 E-value=2.6e+02 Score=29.27 Aligned_cols=129 Identities=12% Similarity=0.118 Sum_probs=0.0
Q ss_pred ChhcHHHHHhcccccC--CCEEEE----------cCCCChhHHHHHHHHHhccCC------CceEEEEecCHHHHhcHHH
Q 010627 186 TEKDKEDILKWGIPNQ--IDMIAL----------SFVRKGSDLVGVRKLLGGHAK------NILLMSKVENQEGVANFDD 247 (505)
Q Consensus 186 te~D~~di~~~al~~g--~d~V~~----------sfV~sa~dv~~v~~~l~~~~~------~~~IiakIEt~~av~nlde 247 (505)
++...+|..+.+...+ +|++-+ ++-+.++.+.++-+.+.+.-. +++|++|+=---.-+++.+
T Consensus 149 ~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ 228 (335)
T TIGR01036 149 SEDAKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLED 228 (335)
T ss_pred cccCHHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHH
Q ss_pred HHhcC-----CeeEEe--------------cCcccCcCCchhHHHHHHHHHHHHHHc--CCCeEEehhhhHhhhcCCCCC
Q 010627 248 ILANS-----DAFMVA--------------RGDLGMEIPIEKIFLAQKVMIYKCNIQ--GKPVVTATQMLESMIKSPRPT 306 (505)
Q Consensus 248 I~~~s-----DgImIa--------------RgDLg~e~~~~~v~~~qk~Ii~~~~~~--gkpvi~ATqmLeSM~~~~~pt 306 (505)
+++++ |||.+. ....|-=-|..-.+.+.+.+-...... ..|+|-++.+.
T Consensus 229 ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~---------- 298 (335)
T TIGR01036 229 IADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGIS---------- 298 (335)
T ss_pred HHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCC----------
Q ss_pred hHHHHHHHHHHHcCCceeee
Q 010627 307 RAEATDVANAVLDGTDCVML 326 (505)
Q Consensus 307 raEv~Dv~nav~~G~D~imL 326 (505)
...|+..++..|||++.+
T Consensus 299 --~~~da~e~l~aGA~~Vqv 316 (335)
T TIGR01036 299 --SAQDALEKIRAGASLLQI 316 (335)
T ss_pred --CHHHHHHHHHcCCcHHHh
No 500
>PF11213 DUF3006: Protein of unknown function (DUF3006); InterPro: IPR021377 This family of proteins has no known function.
Probab=31.99 E-value=1.1e+02 Score=24.54 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=29.2
Q ss_pred CCCEEEEEecCCCCCCccEEEecchhhhcccCCCCEEEE-eCCeEEE
Q 010627 100 QGQEITISTDYTIKGDENMICMSYKKLAVDVQPGSVILC-SDGTISF 145 (505)
Q Consensus 100 ~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~i-dDG~i~l 145 (505)
+|+...|-.+.. ...+.|+-..|+..++.||.+.+ ++|.+.+
T Consensus 8 E~~~AVl~~~~~----~~~~~vp~~~LP~~~keGDvl~i~~~~~~~~ 50 (71)
T PF11213_consen 8 EGDYAVLELEDG----EKEIDVPRSRLPEGAKEGDVLEIGEDGSIEI 50 (71)
T ss_pred eCCEEEEEECCC----eEEEEEEHHHCCCCCCcccEEEECCCceEEE
Confidence 355555554321 13577888889999999999999 7777643
Done!