Query 010628
Match_columns 505
No_of_seqs 215 out of 949
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 10:52:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010628.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010628hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dnz_A Probable RNA-binding pr 97.3 0.0025 8.7E-08 50.2 11.6 39 319-357 46-86 (95)
2 4fxv_A ELAV-like protein 1; RN 97.3 0.0011 3.9E-08 53.0 9.2 78 199-353 17-96 (99)
3 2lkz_A RNA-binding protein 5; 97.3 0.00085 2.9E-08 53.4 8.0 35 319-353 52-92 (95)
4 3s8s_A Histone-lysine N-methyl 97.2 0.002 6.8E-08 52.7 9.4 80 199-355 4-85 (110)
5 2jrs_A RNA-binding protein 39; 97.2 0.003 1E-07 51.3 10.3 84 198-358 23-108 (108)
6 2lxi_A RNA-binding protein 10; 97.1 0.001 3.5E-08 52.3 6.8 35 319-353 43-80 (91)
7 3p5t_L Cleavage and polyadenyl 97.1 0.0013 4.6E-08 51.4 7.3 38 320-357 45-84 (90)
8 1x5s_A Cold-inducible RNA-bind 97.0 0.0045 1.6E-07 49.4 10.0 36 319-354 53-90 (102)
9 1x5u_A Splicing factor 3B subu 97.0 0.0073 2.5E-07 48.5 11.1 38 319-356 56-95 (105)
10 2dgs_A DAZ-associated protein 97.0 0.0086 3E-07 47.5 11.4 37 198-239 7-43 (99)
11 3mdf_A Peptidyl-prolyl CIS-tra 97.0 0.0041 1.4E-07 47.8 9.0 36 199-239 5-40 (85)
12 3bs9_A Nucleolysin TIA-1 isofo 97.0 0.0035 1.2E-07 48.4 8.6 37 199-240 4-40 (87)
13 1whw_A Hypothetical protein ri 97.0 0.0053 1.8E-07 48.7 10.0 38 319-356 49-88 (99)
14 1fxl_A Paraneoplastic encephal 97.0 0.0063 2.2E-07 52.9 11.2 58 320-377 44-109 (167)
15 4a8x_A RNA-binding protein wit 96.9 0.0027 9.2E-08 49.1 7.7 37 320-356 47-85 (88)
16 2x1f_A MRNA 3'-END-processing 96.9 0.0055 1.9E-07 48.4 9.5 38 319-356 43-82 (96)
17 1x5t_A Splicing factor 3B subu 96.9 0.0053 1.8E-07 48.3 9.3 36 319-354 47-84 (96)
18 2dgp_A Bruno-like 4, RNA bindi 96.9 0.0087 3E-07 48.1 10.8 37 319-355 54-95 (106)
19 2cpz_A CUG triplet repeat RNA- 96.9 0.0059 2E-07 50.0 9.6 37 199-240 23-59 (115)
20 2e5h_A Zinc finger CCHC-type a 96.8 0.0057 1.9E-07 48.0 9.0 36 198-238 13-48 (94)
21 3md1_A Nuclear and cytoplasmic 96.8 0.0076 2.6E-07 45.9 9.4 35 320-354 43-79 (83)
22 2dgo_A Cytotoxic granule-assoc 96.8 0.01 3.6E-07 48.4 10.7 38 198-240 12-49 (115)
23 2dgv_A HnRNP M, heterogeneous 96.8 0.007 2.4E-07 47.2 9.1 37 320-356 48-86 (92)
24 2dnm_A SRP46 splicing factor; 96.8 0.0091 3.1E-07 47.7 10.0 36 319-354 54-91 (103)
25 1p27_B RNA-binding protein 8A; 96.8 0.011 3.6E-07 47.6 10.3 78 199-353 21-100 (106)
26 2cq0_A Eukaryotic translation 96.8 0.01 3.4E-07 47.5 10.1 80 198-354 12-93 (103)
27 2dnh_A Bruno-like 5, RNA bindi 96.7 0.011 3.9E-07 47.3 10.3 79 198-354 12-95 (105)
28 1wi8_A EIF-4B, eukaryotic tran 96.7 0.012 4.3E-07 47.0 10.4 36 198-239 12-47 (104)
29 2cqc_A Arginine/serine-rich sp 96.7 0.0066 2.2E-07 47.7 8.6 38 198-240 12-49 (95)
30 4f25_A Polyadenylate-binding p 96.7 0.007 2.4E-07 49.7 9.0 35 201-240 5-39 (115)
31 2do4_A Squamous cell carcinoma 96.7 0.0081 2.8E-07 47.7 9.1 80 198-355 14-95 (100)
32 2fy1_A RNA-binding motif prote 96.7 0.011 3.9E-07 48.5 10.1 35 320-354 48-84 (116)
33 1b7f_A Protein (SXL-lethal pro 96.7 0.01 3.5E-07 51.7 10.5 58 320-377 45-110 (168)
34 2cq3_A RNA-binding protein 9; 96.7 0.017 5.9E-07 46.0 11.0 36 320-355 55-92 (103)
35 2d9p_A Polyadenylate-binding p 96.7 0.011 3.8E-07 47.2 9.8 35 320-354 55-91 (103)
36 2div_A TRNA selenocysteine ass 96.7 0.013 4.5E-07 46.3 10.0 38 198-240 6-44 (99)
37 2cqd_A RNA-binding region cont 96.6 0.011 3.6E-07 48.5 9.6 34 320-353 59-93 (116)
38 2la6_A RNA-binding protein FUS 96.6 0.013 4.5E-07 46.4 9.9 35 319-353 62-98 (99)
39 2cqp_A RNA-binding protein 12; 96.6 0.006 2.1E-07 48.3 7.8 39 319-357 56-96 (98)
40 2cph_A RNA binding motif prote 96.6 0.02 6.7E-07 46.0 11.1 38 319-356 57-97 (107)
41 1oo0_B CG8781-PA, drosophila Y 96.6 0.012 4.1E-07 47.7 9.7 35 319-353 67-103 (110)
42 3ex7_B RNA-binding protein 8A; 96.6 0.014 4.7E-07 48.5 10.2 35 319-353 63-99 (126)
43 2cqb_A Peptidyl-prolyl CIS-tra 96.6 0.0076 2.6E-07 48.1 8.2 36 319-354 53-90 (102)
44 2khc_A Testis-specific RNP-typ 96.6 0.01 3.5E-07 48.7 9.1 36 198-238 37-72 (118)
45 2ywk_A Putative RNA-binding pr 96.6 0.0085 2.9E-07 47.0 8.3 37 198-239 13-49 (95)
46 3ucg_A Polyadenylate-binding p 96.6 0.011 3.7E-07 45.7 8.8 36 200-240 5-40 (89)
47 2cqg_A TDP-43, TAR DNA-binding 96.6 0.011 3.9E-07 47.2 9.1 37 199-240 13-49 (103)
48 2dng_A Eukaryotic translation 96.6 0.016 5.6E-07 46.2 10.0 37 198-240 12-48 (103)
49 1h2v_Z 20 kDa nuclear CAP bind 96.6 0.013 4.4E-07 50.8 10.1 80 199-355 37-118 (156)
50 1x4h_A RNA-binding protein 28; 96.6 0.016 5.4E-07 46.9 10.0 36 199-239 13-48 (111)
51 2dhg_A TRNA selenocysteine ass 96.6 0.016 5.6E-07 46.2 10.0 38 198-240 6-44 (104)
52 3s7r_A Heterogeneous nuclear r 96.5 0.0096 3.3E-07 45.9 8.1 38 198-240 8-45 (87)
53 1s79_A Lupus LA protein; RRM, 96.5 0.015 5.2E-07 46.7 9.5 38 198-240 8-45 (103)
54 2a3j_A U1 small nuclear ribonu 96.5 0.012 4.3E-07 49.2 9.3 44 320-363 72-117 (127)
55 2cpd_A Apobec-1 stimulating pr 96.5 0.018 6.1E-07 45.6 9.9 33 321-353 52-86 (99)
56 1p1t_A Cleavage stimulation fa 96.5 0.0072 2.5E-07 48.4 7.5 37 320-356 50-88 (104)
57 2cpf_A RNA binding motif prote 96.5 0.014 4.7E-07 46.1 9.0 37 199-240 3-39 (98)
58 2cqi_A Nucleolysin TIAR; RNA r 96.5 0.018 6.3E-07 45.9 9.9 37 320-356 55-93 (103)
59 3ulh_A THO complex subunit 4; 96.5 0.015 5.2E-07 46.7 9.3 39 197-240 25-63 (107)
60 2cpj_A Non-POU domain-containi 96.5 0.02 6.9E-07 45.3 9.8 36 321-356 52-89 (99)
61 2kxn_B Transformer-2 protein h 96.4 0.018 6.2E-07 48.3 9.8 34 320-353 88-123 (129)
62 1uaw_A Mouse-musashi-1; RNP-ty 96.4 0.014 4.7E-07 43.7 8.2 35 319-353 41-76 (77)
63 3ns6_A Eukaryotic translation 96.4 0.0086 2.9E-07 47.8 7.3 34 320-353 54-90 (100)
64 3lqv_A PRE-mRNA branch site pr 96.4 0.017 5.7E-07 47.2 9.2 36 320-355 47-84 (115)
65 1x4a_A Splicing factor, argini 96.4 0.026 8.9E-07 45.5 10.2 34 320-353 61-96 (109)
66 2ku7_A MLL1 PHD3-CYP33 RRM chi 96.4 0.015 5.1E-07 49.2 9.0 35 199-238 61-95 (140)
67 3nmr_A Cugbp ELAV-like family 96.4 0.024 8.1E-07 49.6 10.7 103 200-377 2-116 (175)
68 2cpe_A RNA-binding protein EWS 96.3 0.023 7.9E-07 46.1 9.8 35 319-353 64-100 (113)
69 2kt5_A RNA and export factor-b 96.3 0.025 8.4E-07 46.9 10.1 35 320-354 76-112 (124)
70 2err_A Ataxin-2-binding protei 96.3 0.016 5.5E-07 46.9 8.6 34 320-353 69-104 (109)
71 2dnq_A RNA-binding protein 4B; 96.3 0.04 1.4E-06 42.7 10.6 34 321-354 43-78 (90)
72 2ek1_A RNA-binding protein 12; 96.3 0.01 3.4E-07 46.6 7.0 35 319-353 56-92 (95)
73 1x4e_A RNA binding motif, sing 96.2 0.02 6.7E-07 43.9 8.4 36 199-239 3-38 (85)
74 4f02_A Polyadenylate-binding p 96.2 0.029 9.9E-07 51.3 10.9 102 200-378 14-125 (213)
75 2ki2_A SS-DNA binding protein 96.2 0.0095 3.3E-07 46.2 6.5 37 319-356 42-80 (90)
76 2cpi_A CCR4-NOT transcription 96.2 0.014 4.9E-07 47.4 7.8 36 319-354 62-99 (111)
77 2dnp_A RNA-binding protein 14; 96.2 0.027 9.2E-07 43.7 9.1 33 322-354 45-79 (90)
78 2dgw_A Probable RNA-binding pr 96.2 0.017 5.9E-07 44.8 7.8 37 198-240 7-43 (91)
79 2dgx_A KIAA0430 protein; RRM d 96.2 0.026 9E-07 44.4 9.0 33 321-353 53-87 (96)
80 1x4c_A Splicing factor, argini 96.2 0.026 8.8E-07 45.5 9.1 34 321-354 51-91 (108)
81 3n9u_C Cleavage and polyadenyl 96.1 0.022 7.6E-07 49.5 9.1 79 200-353 54-134 (156)
82 2ytc_A PRE-mRNA-splicing facto 96.1 0.03 1E-06 42.7 9.0 28 198-228 9-36 (85)
83 2do0_A HnRNP M, heterogeneous 96.1 0.028 9.7E-07 45.6 9.3 37 198-239 12-48 (114)
84 2mss_A Protein (musashi1); RNA 96.1 0.02 7E-07 42.6 7.7 20 319-338 40-59 (75)
85 1wg5_A Heterogeneous nuclear r 96.1 0.045 1.5E-06 43.8 10.3 42 319-362 56-99 (104)
86 1wex_A Hypothetical protein (r 96.1 0.044 1.5E-06 44.0 10.1 34 321-354 52-89 (104)
87 1x5o_A RNA binding motif, sing 96.1 0.042 1.4E-06 44.6 10.2 37 199-240 23-59 (114)
88 3r27_A HnRNP L, heterogeneous 96.1 0.03 1E-06 44.7 8.8 35 197-236 17-51 (100)
89 2fc8_A NCL protein; structure 96.1 0.031 1.1E-06 44.4 9.0 37 320-356 54-92 (102)
90 3d2w_A TAR DNA-binding protein 96.1 0.014 4.7E-07 45.5 6.6 36 197-237 7-42 (89)
91 2dgt_A RNA-binding protein 30; 96.1 0.034 1.2E-06 43.2 9.0 32 322-353 46-79 (92)
92 2qfj_A FBP-interacting repress 96.0 0.052 1.8E-06 49.3 11.6 59 319-377 69-146 (216)
93 2j76_E EIF-4B, EIF4B, eukaryot 96.0 0.022 7.6E-07 45.2 7.9 36 198-239 16-51 (100)
94 1u6f_A Tcubp1, RNA-binding pro 96.0 0.034 1.2E-06 47.0 9.6 34 320-353 84-119 (139)
95 1wf1_A RNA-binding protein RAL 96.0 0.029 9.9E-07 45.3 8.7 37 320-356 62-100 (110)
96 1wf0_A TDP-43, TAR DNA-binding 96.0 0.0098 3.3E-07 46.0 5.5 26 200-228 4-29 (88)
97 3md3_A Nuclear and cytoplasmic 96.0 0.043 1.5E-06 47.4 10.4 57 320-376 41-107 (166)
98 1whx_A Hypothetical protein ri 96.0 0.022 7.5E-07 46.3 7.9 35 321-355 47-83 (111)
99 2e44_A Insulin-like growth fac 96.0 0.045 1.5E-06 42.9 9.5 36 321-356 55-92 (96)
100 1x4g_A Nucleolysin TIAR; struc 96.0 0.042 1.4E-06 44.3 9.6 35 321-355 62-98 (109)
101 1why_A Hypothetical protein ri 96.0 0.052 1.8E-06 42.6 9.9 34 321-354 54-91 (97)
102 1iqt_A AUF1, heterogeneous nuc 95.9 0.014 4.9E-07 43.4 6.1 21 319-339 40-60 (75)
103 2dgu_A Heterogeneous nuclear r 95.9 0.039 1.3E-06 44.0 9.1 35 321-355 46-82 (103)
104 2f3j_A RNA and export factor b 95.9 0.027 9.2E-07 50.1 8.8 42 320-361 129-172 (177)
105 2i2y_A Fusion protein consists 95.9 0.056 1.9E-06 46.3 10.7 37 320-356 110-148 (150)
106 1l3k_A Heterogeneous nuclear r 95.9 0.061 2.1E-06 47.9 11.3 103 198-377 10-125 (196)
107 2dh8_A DAZ-associated protein 95.9 0.02 7E-07 45.8 7.2 38 198-240 13-50 (105)
108 2lea_A Serine/arginine-rich sp 95.9 0.026 9E-07 47.7 8.2 35 319-353 88-124 (135)
109 1nu4_A U1A RNA binding domain; 95.9 0.03 1E-06 44.0 8.0 40 320-359 51-92 (97)
110 2dis_A Unnamed protein product 95.9 0.056 1.9E-06 43.4 9.8 35 319-353 51-89 (109)
111 2kvi_A Nuclear polyadenylated 95.9 0.038 1.3E-06 43.4 8.5 33 321-353 46-80 (96)
112 2rs2_A Musashi-1, RNA-binding 95.9 0.025 8.5E-07 45.8 7.6 36 199-239 23-58 (109)
113 2ad9_A Polypyrimidine tract-bi 95.8 0.041 1.4E-06 45.4 8.9 34 321-354 68-105 (119)
114 2jwn_A Embryonic polyadenylate 95.8 0.04 1.4E-06 45.5 9.1 35 201-240 36-70 (124)
115 1x4f_A Matrin 3; structural ge 95.8 0.041 1.4E-06 44.9 8.7 40 321-360 63-106 (112)
116 2cq1_A PTB-like protein L; RRM 95.8 0.047 1.6E-06 43.6 8.9 34 321-354 52-89 (101)
117 2lmi_A GRSF-1, G-rich sequence 95.8 0.039 1.3E-06 44.4 8.6 29 198-229 8-36 (107)
118 2kn4_A Immunoglobulin G-bindin 95.8 0.046 1.6E-06 47.2 9.5 34 320-353 112-147 (158)
119 2dnl_A Cytoplasmic polyadenyla 95.7 0.023 8E-07 46.3 7.1 27 199-228 6-32 (114)
120 2pe8_A Splicing factor 45; RRM 95.7 0.065 2.2E-06 43.1 9.6 36 320-355 56-93 (105)
121 3beg_B Splicing factor, argini 95.7 0.041 1.4E-06 45.0 8.5 23 321-343 52-74 (115)
122 1wez_A HnRNP H', FTP-3, hetero 95.7 0.049 1.7E-06 43.5 8.7 36 199-240 13-48 (102)
123 1rk8_A CG8781-PA, CG8781-PA pr 95.7 0.056 1.9E-06 47.3 9.7 38 198-240 69-106 (165)
124 3sde_A Paraspeckle component 1 95.6 0.072 2.5E-06 50.3 11.2 58 321-378 59-118 (261)
125 1x4b_A Heterogeneous nuclear r 95.6 0.042 1.4E-06 44.8 8.3 34 201-239 27-60 (116)
126 1x4d_A Matrin 3; structural ge 95.6 0.044 1.5E-06 43.9 8.1 36 321-356 53-92 (102)
127 2nlw_A Eukaryotic translation 95.6 0.08 2.7E-06 42.3 9.8 37 320-356 61-100 (105)
128 2hvz_A Splicing factor, argini 95.6 0.06 2E-06 42.6 8.9 34 320-353 37-72 (101)
129 2cq4_A RNA binding motif prote 95.6 0.027 9.3E-07 45.8 6.9 34 201-239 25-58 (114)
130 2xnq_A Nuclear polyadenylated 95.5 0.095 3.2E-06 41.3 9.8 33 321-353 58-92 (97)
131 2jvo_A Nucleolar protein 3; nu 95.5 0.064 2.2E-06 43.3 8.8 33 321-353 66-100 (108)
132 2m2b_A RNA-binding protein 10; 95.5 0.033 1.1E-06 46.6 7.4 34 319-353 66-105 (131)
133 2cjk_A Nuclear polyadenylated 95.5 0.023 8E-07 49.3 6.5 59 319-377 44-108 (167)
134 2hgl_A HNRPF protein, heteroge 95.5 0.034 1.2E-06 47.1 7.2 39 199-240 42-81 (136)
135 2cpy_A RNA-binding protein 12; 95.4 0.036 1.2E-06 45.2 7.1 27 199-228 13-39 (114)
136 2adc_A Polypyrimidine tract-bi 95.4 0.11 3.6E-06 48.1 11.0 35 199-238 32-67 (229)
137 2la4_A Nuclear and cytoplasmic 95.3 0.066 2.3E-06 42.3 8.2 24 320-343 63-86 (101)
138 1wel_A RNA-binding protein 12; 95.3 0.037 1.3E-06 45.9 6.8 34 319-353 66-101 (124)
139 2diu_A KIAA0430 protein; struc 95.3 0.024 8.2E-07 44.5 5.2 41 321-361 47-89 (96)
140 2dnn_A RNA-binding protein 12; 95.3 0.049 1.7E-06 44.2 7.3 34 200-239 15-48 (109)
141 3md3_A Nuclear and cytoplasmic 95.2 0.1 3.5E-06 44.9 9.8 38 198-240 84-121 (166)
142 3smz_A Protein raver-1, ribonu 95.2 0.11 3.9E-06 49.4 10.9 59 320-378 57-117 (284)
143 3tyt_A Heterogeneous nuclear r 95.2 0.13 4.4E-06 46.7 10.7 22 321-342 43-64 (205)
144 1qm9_A Polypyrimidine tract-bi 95.2 0.1 3.6E-06 46.6 10.0 26 200-228 2-28 (198)
145 2qfj_A FBP-interacting repress 95.1 0.11 3.7E-06 47.1 10.1 77 200-353 124-202 (216)
146 1b7f_A Protein (SXL-lethal pro 95.1 0.12 4E-06 44.7 9.8 34 320-353 131-168 (168)
147 3q2s_C Cleavage and polyadenyl 95.1 0.066 2.3E-06 49.7 8.5 80 200-354 67-148 (229)
148 2hgm_A HNRPF protein, heteroge 94.9 0.078 2.7E-06 44.2 7.7 27 199-228 40-66 (126)
149 1fxl_A Paraneoplastic encephal 94.7 0.18 6.1E-06 43.3 9.9 36 199-239 86-121 (167)
150 2hgn_A Heterogeneous nuclear r 94.6 0.049 1.7E-06 46.3 5.8 28 199-229 44-71 (139)
151 3nmr_A Cugbp ELAV-like family 94.6 0.17 5.7E-06 44.0 9.5 36 199-239 93-128 (175)
152 2g4b_A Splicing factor U2AF 65 94.4 0.12 4E-06 44.9 8.0 37 199-240 92-128 (172)
153 2wbr_A GW182, gawky, LD47780P; 94.3 0.26 8.7E-06 38.2 8.6 34 320-353 43-78 (89)
154 2cjk_A Nuclear polyadenylated 94.2 0.15 5E-06 44.0 8.2 34 319-353 128-163 (167)
155 2voo_A Lupus LA protein; RNA-b 93.9 0.11 3.7E-06 46.8 6.8 35 201-240 109-143 (193)
156 2ghp_A U4/U6 snRNA-associated 93.8 0.33 1.1E-05 46.3 10.5 58 320-379 81-140 (292)
157 1l3k_A Heterogeneous nuclear r 93.7 0.24 8.3E-06 43.9 8.9 37 199-240 102-138 (196)
158 3pgw_S U1-70K; protein-RNA com 93.7 0.21 7E-06 51.1 9.3 36 320-355 144-181 (437)
159 2yh0_A Splicing factor U2AF 65 93.4 0.35 1.2E-05 42.9 9.4 35 319-353 155-191 (198)
160 3pgw_A U1-A; protein-RNA compl 93.4 0.59 2E-05 44.2 11.6 30 199-228 7-37 (282)
161 4f02_A Polyadenylate-binding p 93.3 0.24 8.4E-06 45.0 8.4 34 320-353 143-178 (213)
162 1jmt_A Splicing factor U2AF 35 93.0 0.33 1.1E-05 38.8 7.6 36 319-354 67-104 (104)
163 2dit_A HIV TAT specific factor 92.8 0.47 1.6E-05 38.2 8.4 45 319-363 63-109 (112)
164 3smz_A Protein raver-1, ribonu 92.0 0.79 2.7E-05 43.4 10.3 103 198-377 92-206 (284)
165 3pgw_A U1-A; protein-RNA compl 91.3 0.69 2.4E-05 43.7 9.1 33 321-353 245-280 (282)
166 3sde_A Paraspeckle component 1 91.3 0.8 2.7E-05 42.9 9.3 36 200-240 95-130 (261)
167 1qm9_A Polypyrimidine tract-bi 91.1 0.64 2.2E-05 41.3 8.2 34 321-354 159-195 (198)
168 2d9o_A DNAJ (HSP40) homolog, s 90.9 0.41 1.4E-05 38.0 5.8 36 319-354 53-88 (100)
169 2adc_A Polypyrimidine tract-bi 90.7 1.1 3.9E-05 40.9 9.7 34 321-354 190-226 (229)
170 1wg1_A KIAA1579 protein, homol 90.3 0.18 6.1E-06 38.7 3.1 37 320-356 40-78 (88)
171 3s6e_A RNA-binding protein 39; 90.1 0.48 1.6E-05 38.5 5.7 36 319-354 54-91 (114)
172 2e5j_A Methenyltetrahydrofolat 89.1 0.66 2.3E-05 36.1 5.7 37 320-356 56-94 (97)
173 3tyt_A Heterogeneous nuclear r 88.7 1.1 3.6E-05 40.5 7.5 24 320-343 165-188 (205)
174 2ghp_A U4/U6 snRNA-associated 88.1 1.7 5.9E-05 41.1 9.1 58 320-377 159-232 (292)
175 1fj7_A Nucleolin RBD1, protein 87.3 0.96 3.3E-05 35.3 5.6 35 319-354 57-93 (101)
176 2jvr_A Nucleolar protein 3; RN 87.0 0.55 1.9E-05 38.0 4.0 36 320-355 67-104 (111)
177 2dha_A FLJ20171 protein; RRM d 87.0 0.61 2.1E-05 38.5 4.3 40 199-241 21-62 (123)
178 2cpx_A Hypothetical protein FL 86.9 1.1 3.6E-05 36.0 5.8 36 319-354 66-103 (115)
179 3v4m_A Splicing factor U2AF 65 86.5 0.55 1.9E-05 37.5 3.7 36 319-354 58-95 (105)
180 1sjq_A Polypyrimidine tract-bi 86.5 0.72 2.5E-05 36.9 4.3 38 198-240 13-50 (105)
181 2xs2_A Deleted in azoospermia- 86.4 0.77 2.6E-05 36.0 4.6 39 198-241 6-44 (102)
182 2fc9_A NCL protein; structure 86.3 0.74 2.5E-05 36.0 4.4 35 319-353 52-88 (101)
183 1fjc_A Nucleolin RBD2, protein 85.9 0.58 2E-05 36.2 3.5 35 320-354 53-89 (96)
184 2cqh_A IGF-II mRNA-binding pro 85.6 0.78 2.7E-05 35.3 4.1 35 320-354 44-81 (93)
185 1x5p_A Negative elongation fac 85.3 0.88 3E-05 35.3 4.3 35 320-354 49-85 (97)
186 2krb_A Eukaryotic translation 83.6 0.86 2.9E-05 34.0 3.4 25 319-343 46-70 (81)
187 2db1_A Heterogeneous nuclear r 83.2 1.4 4.6E-05 35.8 4.8 40 199-241 15-55 (118)
188 2bz2_A Negative elongation fac 82.6 1.9 6.5E-05 35.2 5.4 36 320-355 73-110 (121)
189 3ue2_A Poly(U)-binding-splicin 81.0 0.96 3.3E-05 36.9 3.0 36 320-355 71-108 (118)
190 1sjr_A Polypyrimidine tract-bi 80.1 2.2 7.4E-05 37.1 5.1 35 320-354 84-122 (164)
191 2e5g_A U6 snRNA-specific termi 79.6 1.5 5.1E-05 33.7 3.6 34 322-356 47-82 (94)
192 2krb_A Eukaryotic translation 77.3 3 0.0001 30.9 4.6 37 201-239 1-40 (81)
193 2diu_A KIAA0430 protein; struc 77.2 3.5 0.00012 32.2 4.9 37 199-236 7-44 (96)
194 2cq2_A Hypothetical protein LO 77.2 1.8 6E-05 35.1 3.4 23 321-343 64-86 (114)
195 1sjq_A Polypyrimidine tract-bi 77.0 2.1 7E-05 34.2 3.7 35 320-354 52-90 (105)
196 2e5i_A Heterogeneous nuclear r 76.5 4 0.00014 33.6 5.4 37 321-357 62-103 (124)
197 1fje_B Nucleolin RBD12, protei 76.1 3.5 0.00012 35.4 5.4 59 319-378 53-121 (175)
198 3egn_A RNA-binding protein 40; 75.4 1.9 6.5E-05 36.1 3.3 35 319-353 91-127 (143)
199 2dhx_A Poly (ADP-ribose) polym 74.5 4.1 0.00014 32.1 4.7 35 200-237 7-44 (104)
200 2g4b_A Splicing factor U2AF 65 74.0 5.5 0.00019 33.9 6.1 57 320-377 51-115 (172)
201 1wg1_A KIAA1579 protein, homol 72.6 3.1 0.00011 31.4 3.7 33 200-238 4-36 (88)
202 2hzc_A Splicing factor U2AF 65 72.4 4.1 0.00014 30.4 4.3 26 200-228 5-30 (87)
203 2hzc_A Splicing factor U2AF 65 72.4 2.6 9E-05 31.5 3.2 22 320-342 53-74 (87)
204 2db1_A Heterogeneous nuclear r 71.8 1.6 5.6E-05 35.3 1.9 20 319-338 60-79 (118)
205 2e5g_A U6 snRNA-specific termi 71.8 5.6 0.00019 30.3 5.0 33 199-236 6-38 (94)
206 1fje_B Nucleolin RBD12, protei 71.6 3.2 0.00011 35.6 4.0 35 319-353 135-171 (175)
207 3u1l_A PRE-mRNA-splicing facto 69.4 5.3 0.00018 36.9 5.0 24 320-343 179-202 (240)
208 2e5j_A Methenyltetrahydrofolat 68.8 5.9 0.0002 30.4 4.6 28 199-229 17-44 (97)
209 3zzy_A Polypyrimidine tract-bi 68.7 4.1 0.00014 33.8 3.8 35 322-356 68-106 (130)
210 2lcw_A RNA-binding protein FUS 71.1 1.1 3.7E-05 36.1 0.0 35 319-353 56-92 (116)
211 2yh0_A Splicing factor U2AF 65 67.6 6.3 0.00022 34.4 5.1 26 200-228 3-28 (198)
212 2cpx_A Hypothetical protein FL 66.1 3.5 0.00012 32.8 2.8 27 199-228 23-49 (115)
213 2jvr_A Nucleolar protein 3; RN 65.0 5.5 0.00019 31.9 3.7 36 199-238 26-61 (111)
214 3ue2_A Poly(U)-binding-splicin 63.8 6.7 0.00023 31.8 4.1 41 200-242 19-61 (118)
215 2dnr_A Synaptojanin-1; RRM dom 62.8 5.3 0.00018 30.8 3.0 32 321-353 50-83 (91)
216 2lcw_A RNA-binding protein FUS 66.2 1.6 5.5E-05 35.0 0.0 27 199-228 5-31 (116)
217 2dha_A FLJ20171 protein; RRM d 61.9 2.8 9.6E-05 34.4 1.4 21 319-339 67-87 (123)
218 2fc9_A NCL protein; structure 61.7 6.9 0.00023 30.2 3.7 28 198-228 12-39 (101)
219 2cqh_A IGF-II mRNA-binding pro 60.7 7 0.00024 29.6 3.5 28 199-229 6-33 (93)
220 2j8a_A Histone-lysine N-methyl 60.5 10 0.00034 31.5 4.5 37 202-243 3-43 (136)
221 3dxb_A Thioredoxin N-terminall 58.0 8.1 0.00028 34.8 4.0 37 319-355 174-212 (222)
222 2kn4_A Immunoglobulin G-bindin 56.6 17 0.00058 30.5 5.7 61 319-379 12-93 (158)
223 1fjc_A Nucleolin RBD2, protein 52.6 12 0.0004 28.4 3.6 28 198-228 13-40 (96)
224 2xs2_A Deleted in azoospermia- 50.3 3.6 0.00012 32.0 0.2 20 319-338 49-68 (102)
225 1fj7_A Nucleolin RBD1, protein 49.7 13 0.00045 28.5 3.5 26 200-228 16-41 (101)
226 3tht_A Alkylated DNA repair pr 48.4 12 0.00041 36.5 3.7 23 321-343 57-79 (345)
227 2dhx_A Poly (ADP-ribose) polym 46.2 42 0.0014 26.4 5.7 45 321-365 48-95 (104)
228 1l8d_A DNA double-strand break 45.0 71 0.0024 25.1 7.3 31 280-310 49-85 (112)
229 3egn_A RNA-binding protein 40; 41.9 24 0.00083 29.0 4.2 29 198-229 42-70 (143)
230 1ufw_A Synaptojanin 2; RNP dom 40.6 17 0.00058 28.2 2.6 23 320-343 58-80 (95)
231 3he5_A Synzip1; heterodimeric 37.9 70 0.0024 20.1 4.6 20 287-306 29-48 (49)
232 3u1l_A PRE-mRNA-splicing facto 37.7 29 0.00098 31.9 4.2 40 199-240 132-177 (240)
233 2cq2_A Hypothetical protein LO 36.9 32 0.0011 27.5 3.9 36 199-239 23-60 (114)
234 3zzy_A Polypyrimidine tract-bi 33.8 51 0.0017 27.0 4.7 35 202-241 29-63 (130)
235 1sjr_A Polypyrimidine tract-bi 33.5 39 0.0013 29.0 4.2 34 202-240 47-80 (164)
236 2e5i_A Heterogeneous nuclear r 30.6 59 0.002 26.3 4.6 36 200-240 22-59 (124)
237 3v4m_A Splicing factor U2AF 65 29.7 46 0.0016 25.9 3.7 41 200-242 4-51 (105)
238 2dit_A HIV TAT specific factor 29.0 84 0.0029 24.4 5.3 38 199-238 13-58 (112)
239 1pfi_A Major coat protein of P 27.1 92 0.0031 19.8 3.8 27 4-30 19-45 (46)
240 2kv5_A FST, putative uncharact 25.1 75 0.0026 19.2 3.0 25 473-497 4-28 (33)
241 2l2t_A Receptor tyrosine-prote 24.1 74 0.0025 20.7 3.2 13 19-31 25-37 (44)
242 1wey_A Calcipressin 1; structu 24.1 81 0.0028 24.8 4.0 30 202-231 6-37 (104)
243 1whv_A Poly(A)-specific ribonu 23.6 62 0.0021 25.2 3.2 21 321-341 50-70 (100)
244 2ks1_B Epidermal growth factor 22.4 87 0.003 20.4 3.3 13 19-31 26-38 (44)
245 4eyt_A Telomerase associated p 22.1 71 0.0024 24.1 3.2 34 319-352 45-78 (129)
246 3twe_A Alpha4H; unknown functi 21.8 1.1E+02 0.0038 16.8 3.2 19 294-312 6-24 (27)
247 1ufw_A Synaptojanin 2; RNP dom 20.5 1.6E+02 0.0056 22.6 5.0 45 196-242 10-60 (95)
248 2lsl_A Telomerase associated p 25.8 21 0.00073 27.2 0.0 31 320-350 77-107 (137)
249 2dnr_A Synaptojanin-1; RRM dom 20.1 1.5E+02 0.0053 22.5 4.8 44 197-242 3-51 (91)
No 1
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.34 E-value=0.0025 Score=50.16 Aligned_cols=39 Identities=10% Similarity=-0.036 Sum_probs=30.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCCCC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPR 357 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP~ 357 (505)
..|.|||+|.+..+|..|.+.+... +...+.|+.|.++.
T Consensus 46 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 86 (95)
T 2dnz_A 46 SKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERL 86 (95)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCC
T ss_pred eeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccccc
Confidence 3589999999999999999976654 34567788776544
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=97.31 E-value=0.0011 Score=53.01 Aligned_cols=78 Identities=10% Similarity=0.133 Sum_probs=56.4
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEecchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccc
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMKT 278 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~L~~l~~~r~~~~~~le~~~~k~~k~~~~rp~~k~ 278 (505)
....+|.|.|||.+.++ +.|+++|++. |.|.++.+.+|-.
T Consensus 17 ~~gt~lfV~nLp~~~te---~~L~~~F~~~--G~I~~v~i~~d~~----------------------------------- 56 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQ---DELRSLFSSI--GEVESAKLIRDKV----------------------------------- 56 (99)
T ss_dssp CCCSEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEECSS-----------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEeEeeecCC-----------------------------------
Confidence 34569999999998875 7788999875 5677766654300
Q ss_pred ccccCCCCcccHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 279 GFLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 279 ~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
... ..|.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 57 ----------------------------------tg~---~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 57 ----------------------------------AGH---SLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp ----------------------------------SCC---EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ----------------------------------CCc---ccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 000 3589999999999999999877554 3345677776
No 3
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=97.28 E-value=0.00085 Score=53.36 Aligned_cols=35 Identities=23% Similarity=0.106 Sum_probs=26.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccCC------CCCceeeeC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTRN------PTLWLTEWA 353 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~~------~~~~~v~~A 353 (505)
..|.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 52 srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~A 92 (95)
T 2lkz_A 52 NRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFA 92 (95)
T ss_dssp CSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEEC
T ss_pred CceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEc
Confidence 35899999999999999999876642 234566665
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=97.17 E-value=0.002 Score=52.67 Aligned_cols=80 Identities=10% Similarity=0.053 Sum_probs=59.9
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEecchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccc
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMKT 278 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~L~~l~~~r~~~~~~le~~~~k~~k~~~~rp~~k~ 278 (505)
+..+||.|.|||.+.++ +.|+++|++. |.|.++.+.+|-. +
T Consensus 4 ~p~~~lfV~nL~~~~te---~~L~~~F~~~--G~i~~v~i~~d~~-------------------------------t--- 44 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRE---TFLKDMCRKY--GEVEEVEILLHPR-------------------------------T--- 44 (110)
T ss_dssp SCCCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEECTT-------------------------------T---
T ss_pred CCCcEEEEECCCCCCCH---HHHHHHHHhc--CCeeEEEEEECCC-------------------------------C---
Confidence 45689999999998875 7788999875 6787777765410 0
Q ss_pred ccccCCCCcccHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCC
Q 010628 279 GFLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (505)
Q Consensus 279 ~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APe 355 (505)
.. ..|.|||+|++..+|+.|.+.+... ....+.|+.|+.
T Consensus 45 -----------------------------------g~---~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 45 -----------------------------------RK---HLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp -----------------------------------CC---EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred -----------------------------------Cc---eeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 00 3589999999999999999987654 345677787753
No 5
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.16 E-value=0.003 Score=51.31 Aligned_cols=84 Identities=12% Similarity=0.111 Sum_probs=60.7
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEecchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 010628 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMK 277 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~L~~l~~~r~~~~~~le~~~~k~~k~~~~rp~~k 277 (505)
.+..+||.|.|||.+.++ +.|+++|+.. |.|.++.+.+|-.
T Consensus 23 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~~~---------------------------------- 63 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITE---DMLRGIFEPF--GRIESIQLMMDSE---------------------------------- 63 (108)
T ss_dssp CSSCEEEEEECCCSSCCH---HHHHHHHTTT--SCEEEEEEEEETT----------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEcCC----------------------------------
Confidence 346789999999998765 6788999875 4566666554200
Q ss_pred cccccCCCCcccHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCC
Q 010628 278 TGFLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (505)
Q Consensus 278 ~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APe 355 (505)
.| . ..|.|||+|.+..+|..|.+.+... ....+.|+.|-+
T Consensus 64 ------~g-----------------------------~---~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 105 (108)
T 2jrs_A 64 ------TG-----------------------------R---SKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTE 105 (108)
T ss_dssp ------TT-----------------------------E---EEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCS
T ss_pred ------CC-----------------------------c---cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEccc
Confidence 00 0 3589999999999999999877654 345678888766
Q ss_pred CCC
Q 010628 356 PRD 358 (505)
Q Consensus 356 P~D 358 (505)
..|
T Consensus 106 k~d 108 (108)
T 2jrs_A 106 RTD 108 (108)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 6
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=97.11 E-value=0.001 Score=52.33 Aligned_cols=35 Identities=17% Similarity=0.065 Sum_probs=26.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC---CCCCceeeeC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR---NPTLWLTEWA 353 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~---~~~~~~v~~A 353 (505)
..|.|||+|.+..+|..|.+.+.+. +...+.|+.|
T Consensus 43 ~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 43 SRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred cCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 3589999999999999998865332 3455677765
No 7
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.09 E-value=0.0013 Score=51.41 Aligned_cols=38 Identities=11% Similarity=-0.069 Sum_probs=26.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCCCC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPR 357 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP~ 357 (505)
.|.|||+|.+..+|..|.+.+.+. ....+.|+.|..|.
T Consensus 45 kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~ 84 (90)
T 3p5t_L 45 KGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLE 84 (90)
T ss_dssp EEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC----
T ss_pred CcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCc
Confidence 589999999999999999877654 34556777654443
No 8
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.02 E-value=0.0045 Score=49.41 Aligned_cols=36 Identities=14% Similarity=0.037 Sum_probs=27.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 354 (505)
..+.|||+|.+..+|..|.+.+... +...+.|+.|-
T Consensus 53 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 53 SRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred cccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3589999999999999999876654 34556777653
No 9
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.99 E-value=0.0073 Score=48.45 Aligned_cols=38 Identities=18% Similarity=-0.026 Sum_probs=29.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCCC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP 356 (505)
..|.|||+|.+..+|..|.+.+... ....+.|+.|-.+
T Consensus 56 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 95 (105)
T 1x5u_A 56 HQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAH 95 (105)
T ss_dssp BCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTT
T ss_pred CCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 3589999999999999999976654 3456777776433
No 10
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.99 E-value=0.0086 Score=47.47 Aligned_cols=37 Identities=11% Similarity=0.177 Sum_probs=27.9
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeE
Q 010628 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (505)
....+||.|.|||.+.++ +.|+++|++. |.|.++.+.
T Consensus 7 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~ 43 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGE---TELREYFKKF--GVVTEVVMI 43 (99)
T ss_dssp CSSCCEEEEESCCSSCCH---HHHHHHHSSS--SCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEE
Confidence 356789999999998775 6788999875 456555553
No 11
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=96.97 E-value=0.0041 Score=47.75 Aligned_cols=36 Identities=11% Similarity=0.192 Sum_probs=27.0
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeE
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (505)
+..+||.|.|||.+.++ +.|+++|+.. |.|.++.+.
T Consensus 5 ~~~~~l~V~nl~~~~~~---~~l~~~f~~~--G~i~~v~i~ 40 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDD---KVLHAAFIPF--GDITDIQIP 40 (85)
T ss_dssp CCSSEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEECC
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHhcc--CCEEEEEEE
Confidence 46789999999998765 6788888876 455555543
No 12
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=96.97 E-value=0.0035 Score=48.39 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=27.1
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEe
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (505)
...+||.|.|||.+.++ +.|+++|+.. |.|.++.+.+
T Consensus 4 ~~~~~l~v~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 40 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITT---AAIAAAFAPF--GRISDARVVK 40 (87)
T ss_dssp --CEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEE
T ss_pred CCceEEEEeCCCCCCCH---HHHHHHHHhc--CCEeEEEEEe
Confidence 45789999999998765 6788999876 4566666543
No 13
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.97 E-value=0.0053 Score=48.68 Aligned_cols=38 Identities=13% Similarity=-0.076 Sum_probs=28.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCCC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP 356 (505)
..|.|||+|.+..+|..|.+.+... ....+.|+.|-.+
T Consensus 49 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 88 (99)
T 1whw_A 49 PKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK 88 (99)
T ss_dssp CCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCC
T ss_pred cCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 3589999999999999999876653 3455677766443
No 14
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=96.95 E-value=0.0063 Score=52.86 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=40.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCCC------CCeecCCCCCChhHHHHHHHH
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP------RDVYWQNLAIPYVSLSVRRLI 377 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP------~DIiW~NL~~s~~~r~~R~~~ 377 (505)
.|.|||+|.+..+|..|.+.+... ....+.++.|..+ ..++-.||..+..+..++..+
T Consensus 44 ~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f 109 (167)
T 1fxl_A 44 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 109 (167)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHH
T ss_pred eeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHH
Confidence 589999999999999999876553 2344556655432 347888888766665555544
No 15
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=96.93 E-value=0.0027 Score=49.12 Aligned_cols=37 Identities=14% Similarity=0.039 Sum_probs=28.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCCC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP 356 (505)
.|.|||+|.+..+|..|.+.+... ....+.++.|-.|
T Consensus 47 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (88)
T 4a8x_A 47 KGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAP 85 (88)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCC
T ss_pred CcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCC
Confidence 589999999999999999976654 3345667665433
No 16
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=96.91 E-value=0.0055 Score=48.38 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=28.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCCC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP 356 (505)
..|.|||+|.+..+|..|.+.+... ....+.++.|-++
T Consensus 43 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 82 (96)
T 2x1f_A 43 SKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNS 82 (96)
T ss_dssp BCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCC
Confidence 3589999999999999999876654 3455677776443
No 17
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.90 E-value=0.0053 Score=48.34 Aligned_cols=36 Identities=14% Similarity=0.058 Sum_probs=27.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 354 (505)
..|.|||+|.+..+|..|.+.+... ....+.|+.|-
T Consensus 47 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (96)
T 1x5t_A 47 SKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF 84 (96)
T ss_dssp CCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred cCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence 3589999999999999999976654 34456677663
No 18
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=96.90 E-value=0.0087 Score=48.08 Aligned_cols=37 Identities=14% Similarity=0.040 Sum_probs=28.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC-----CCCCceeeeCCC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR-----NPTLWLTEWASE 355 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~-----~~~~~~v~~APe 355 (505)
..|.|||+|.+..+|..|.+.+... ....+.|+.|-.
T Consensus 54 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 95 (106)
T 2dgp_A 54 HKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADS 95 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCC
T ss_pred cceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCc
Confidence 3589999999999999999877653 345677777643
No 19
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=96.85 E-value=0.0059 Score=49.98 Aligned_cols=37 Identities=11% Similarity=0.363 Sum_probs=27.8
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEe
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (505)
+..+||.|.|||.+.++ +.|+++|+.. +.|.++.+.+
T Consensus 23 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 59 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGD---QDLLQMFMPF--GNVVSAKVFI 59 (115)
T ss_dssp STTCCEEEESCCSSCCH---HHHHHHHGGG--SCCSEEEEEE
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEE
Confidence 45689999999998875 7788898876 4565655543
No 20
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.83 E-value=0.0057 Score=47.97 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=27.0
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEe
Q 010628 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQV 238 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 238 (505)
.+..++|.|.|||.+.++ +.|+++|+.. |.|.++.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~v~~v~i 48 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTN---NDLYRIFSKY--GKVVKVTI 48 (94)
T ss_dssp CCCTTSEEEESCCTTSCH---HHHHHHTTTT--SCEEEEEE
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHHhc--CCeEEEEE
Confidence 456789999999998765 6788999875 44555544
No 21
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=96.83 E-value=0.0076 Score=45.94 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=27.1
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 354 (505)
.|.|||+|.+..+|..|.+.+... ....+.++.|-
T Consensus 43 ~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 43 RGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 589999999999999999976654 33456677653
No 22
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=96.80 E-value=0.01 Score=48.43 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=28.8
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEe
Q 010628 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (505)
....+||.|.|||.+.++ +.|+++|+.. |.|.++.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 49 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITT---EDIKAAFAPF--GRISDARVVK 49 (115)
T ss_dssp STTCEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEE
Confidence 346789999999998765 6788999876 4566666653
No 23
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=96.78 E-value=0.007 Score=47.22 Aligned_cols=37 Identities=11% Similarity=-0.067 Sum_probs=27.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCCC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP 356 (505)
.|.|||+|.+..+|..|.+.+... ....+.|+.|-.+
T Consensus 48 ~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 48 KGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 579999999999999999876654 3345666665433
No 24
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.78 E-value=0.0091 Score=47.72 Aligned_cols=36 Identities=19% Similarity=0.101 Sum_probs=27.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 354 (505)
..|.|||+|.+..+|..|.+.+... ....+.|+.|-
T Consensus 54 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dnm_A 54 PRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR 91 (103)
T ss_dssp BCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECS
T ss_pred CCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECC
Confidence 3589999999999999999976654 33456666653
No 25
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=96.77 E-value=0.011 Score=47.57 Aligned_cols=78 Identities=10% Similarity=0.153 Sum_probs=55.5
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEecchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccc
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMKT 278 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~L~~l~~~r~~~~~~le~~~~k~~k~~~~rp~~k~ 278 (505)
...+||.|.|||.+.++ +.|+++|+.. |.|.++.+..|-.
T Consensus 21 ~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~i~~v~i~~~~~----------------------------------- 60 (106)
T 1p27_B 21 VEGWILFVTGVHEEATE---EDIHDKFAEY--GEIKNIHLNLDRR----------------------------------- 60 (106)
T ss_dssp TTBEEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEEEECTT-----------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHhcc--CCeEEEEEEecCC-----------------------------------
Confidence 45689999999998765 6788899876 5666666543200
Q ss_pred ccccCCCCcccHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 279 GFLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 279 ~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
.. ...|.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 61 ----------------------------------~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 61 ----------------------------------TG---YLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp ----------------------------------TS---SEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred ----------------------------------CC---ceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 00 03589999999999999999876654 3345666654
No 26
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.76 E-value=0.01 Score=47.45 Aligned_cols=80 Identities=21% Similarity=0.213 Sum_probs=56.5
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEecchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 010628 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMK 277 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~L~~l~~~r~~~~~~le~~~~k~~k~~~~rp~~k 277 (505)
....+||.|.|||.+.++ +.|+++|+.. |.|.++.+.+|-.
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~i~~v~i~~~~~---------------------------------- 52 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRE---TDLQELFRPF--GSISRIYLAKDKT---------------------------------- 52 (103)
T ss_dssp CSSSEEEEEESCCTTCCH---HHHHTTSTTT--CCEEEEEEEECSS----------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEeecCC----------------------------------
Confidence 346789999999998765 6788999875 4566665543200
Q ss_pred cccccCCCCcccHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCC
Q 010628 278 TGFLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (505)
Q Consensus 278 ~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 354 (505)
.. ...|.|||+|.+..+|..|.+.+... ....+.|+.|-
T Consensus 53 -----------------------------------~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (103)
T 2cq0_A 53 -----------------------------------TG---QSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 93 (103)
T ss_dssp -----------------------------------SC---SEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred -----------------------------------CC---ceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECC
Confidence 00 03589999999999999999976654 33456666653
No 27
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=96.74 E-value=0.011 Score=47.31 Aligned_cols=79 Identities=18% Similarity=0.140 Sum_probs=56.8
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEecchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 010628 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMK 277 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~L~~l~~~r~~~~~~le~~~~k~~k~~~~rp~~k 277 (505)
.+..+||.|.|||.+.++ +.|+++|+.. |.|.++.+..|- +
T Consensus 12 ~~~~~~l~v~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~--------------------------------~-- 52 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSE---EDVLRLFQPF--GVIDECTVLRGP--------------------------------D-- 52 (105)
T ss_dssp CCCCCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEECS--------------------------------S--
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEECC--------------------------------C--
Confidence 345789999999998765 6788999876 456666554320 0
Q ss_pred cccccCCCCcccHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeCCHHHHHHHHHhcccC--CC---CCceeee
Q 010628 278 TGFLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NP---TLWLTEW 352 (505)
Q Consensus 278 ~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~---~~~~v~~ 352 (505)
. ...|.|||+|.+..+|..|.+.+... .. ..+.|+.
T Consensus 53 ------------------------------------g---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~ 93 (105)
T 2dnh_A 53 ------------------------------------G---SSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKF 93 (105)
T ss_dssp ------------------------------------S---CEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEE
T ss_pred ------------------------------------C---CcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEE
Confidence 0 03579999999999999999877654 22 5677877
Q ss_pred CC
Q 010628 353 AS 354 (505)
Q Consensus 353 AP 354 (505)
|-
T Consensus 94 a~ 95 (105)
T 2dnh_A 94 AD 95 (105)
T ss_dssp SC
T ss_pred Cc
Confidence 64
No 28
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.73 E-value=0.012 Score=47.02 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=27.6
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeE
Q 010628 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (505)
....+||.|.|||.+.++ +.|+++|+.. | |.++.+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G-i~~v~i~ 47 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTE---ESIKEFFRGL--N-ISAVRLP 47 (104)
T ss_dssp SSSCEEEEEESCCSSCCH---HHHHHHTTTS--C-EEEEECC
T ss_pred CCCCCEEEEeCCCCcCCH---HHHHHHHHHC--C-ceEEEEe
Confidence 346789999999998765 7789999876 4 6665553
No 29
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.72 E-value=0.0066 Score=47.65 Aligned_cols=38 Identities=11% Similarity=-0.017 Sum_probs=28.3
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEe
Q 010628 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (505)
.+..+||.|.|||.+.++ +.|+++|+.. |.|.++.+.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~ 49 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTE---RDLREVFSKY--GPIADVSIVY 49 (95)
T ss_dssp CCGGGCEEEESCCSSCCH---HHHHHHHHTT--SCEEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHHhc--CCeeEEEEEE
Confidence 346789999999998765 6788888875 4566666543
No 30
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=96.72 E-value=0.007 Score=49.69 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=27.5
Q ss_pred cceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEe
Q 010628 201 QFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (505)
Q Consensus 201 ~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (505)
..+|.|.|||.+.++ +.|+++|++. |.|.++.+++
T Consensus 5 ~~~lfV~nLp~~~te---~~L~~~F~~~--G~v~~v~i~~ 39 (115)
T 4f25_A 5 SGNIFIKNLDKSIDN---KALYDTFSAF--GNILSCKVVC 39 (115)
T ss_dssp CCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEE
T ss_pred CCEEEECCCCCCCCH---HHHHHHHhcc--CCEEEEEEee
Confidence 468999999998875 7888999886 5676766654
No 31
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.72 E-value=0.0081 Score=47.74 Aligned_cols=80 Identities=10% Similarity=0.128 Sum_probs=56.7
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEecchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 010628 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMK 277 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~L~~l~~~r~~~~~~le~~~~k~~k~~~~rp~~k 277 (505)
....+||.|.|||.+.++ +.|+++|+.. |.|.++.+..|- +
T Consensus 14 ~~~~~~l~v~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~--------------------------------~-- 54 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTK---EELEEICKAH--GTVKDLRLVTNR--------------------------------A-- 54 (100)
T ss_dssp CCCCSCEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEECT--------------------------------T--
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEEECC--------------------------------C--
Confidence 345789999999998765 6788999875 456666554320 0
Q ss_pred cccccCCCCcccHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCC
Q 010628 278 TGFLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (505)
Q Consensus 278 ~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APe 355 (505)
.. ..|.|||+|.+..+|..|.+.+... ....+.|+.|-.
T Consensus 55 ------------------------------------g~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 55 ------------------------------------GK---PKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp ------------------------------------SC---EEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred ------------------------------------CC---EEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 00 3589999999999999999876543 345577776643
No 32
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=96.69 E-value=0.011 Score=48.52 Aligned_cols=35 Identities=20% Similarity=0.157 Sum_probs=27.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 354 (505)
.|.|||+|.+..+|..|.+.+... ....+.|+.|-
T Consensus 48 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 48 RGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred ccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 589999999999999999977653 33456666653
No 33
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=96.69 E-value=0.01 Score=51.65 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=41.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCC------CCCCeecCCCCCChhHHHHHHHH
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS------EPRDVYWQNLAIPYVSLSVRRLI 377 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP------eP~DIiW~NL~~s~~~r~~R~~~ 377 (505)
.|.|||+|.+..+|..|.+.+... ....+.++.|. .+.-|+-.||.....+..++..+
T Consensus 45 ~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f 110 (168)
T 1b7f_A 45 YGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIF 110 (168)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHH
T ss_pred ceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhh
Confidence 589999999999999999876543 23345555543 34458888998776666665544
No 34
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.69 E-value=0.017 Score=46.04 Aligned_cols=36 Identities=14% Similarity=0.057 Sum_probs=27.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APe 355 (505)
.+.|||+|.+..+|..|.+.+... ....+.|+.|-.
T Consensus 55 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 55 KGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred cEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 579999999999999999876553 344566766543
No 35
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.68 E-value=0.011 Score=47.21 Aligned_cols=35 Identities=20% Similarity=0.133 Sum_probs=27.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 354 (505)
.+.|||+|.+..+|..|.+.+... ....+.|+.|-
T Consensus 55 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 55 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 579999999999999999876654 34556777653
No 36
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.66 E-value=0.013 Score=46.33 Aligned_cols=38 Identities=11% Similarity=0.213 Sum_probs=27.7
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCcee-eeEeEe
Q 010628 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYL-THQVVV 240 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~-~v~i~~ 240 (505)
....+||.|.|||.+.++ +.|+++|+.. |.+. ++.+.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~~v~i~~ 44 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDE---NFISRAFATM--GETVMSVKIIR 44 (99)
T ss_dssp CSSSSEEEECSCCTTCCH---HHHHHHHHHT--TCCCCEEEEEE
T ss_pred CCCccEEEEeCCCCCCCH---HHHHHHHHHh--CCcceEEEEee
Confidence 445789999999998765 6788888875 4454 555543
No 37
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.65 E-value=0.011 Score=48.53 Aligned_cols=34 Identities=15% Similarity=0.058 Sum_probs=25.8
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC-CCCCceeeeC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR-NPTLWLTEWA 353 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~-~~~~~~v~~A 353 (505)
.+.|||+|.+..+|+.|.+.+... ....+.|+.|
T Consensus 59 ~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 93 (116)
T 2cqd_A 59 RGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA 93 (116)
T ss_dssp CSEEEEEESSHHHHHHHHTCSSCEETTEECEEEES
T ss_pred ceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEc
Confidence 589999999999999999876531 2344666666
No 38
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=96.64 E-value=0.013 Score=46.40 Aligned_cols=35 Identities=17% Similarity=0.085 Sum_probs=26.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
..|.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 62 ~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 62 LKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp EEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred eeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 3589999999999999999876654 3345566654
No 39
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.64 E-value=0.006 Score=48.28 Aligned_cols=39 Identities=23% Similarity=0.150 Sum_probs=30.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCCCC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPR 357 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP~ 357 (505)
..|.|||+|.+..+|+.|.+.+... ....+.|+.|-.|.
T Consensus 56 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (98)
T 2cqp_A 56 PTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGPS 96 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCSS
T ss_pred eeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Confidence 3589999999999999999877654 34567788876654
No 40
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.64 E-value=0.02 Score=46.00 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=28.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhc-ccC--CCCCceeeeCCCC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQ-QTR--NPTLWLTEWASEP 356 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~-~~~--~~~~~~v~~APeP 356 (505)
..|.|||+|.+..+|..|.+.+ ... ....+.|+.|-..
T Consensus 57 ~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~ 97 (107)
T 2cph_A 57 HRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSE 97 (107)
T ss_dssp SCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCC
T ss_pred cCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCC
Confidence 3689999999999999999887 443 3456777776443
No 41
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=96.63 E-value=0.012 Score=47.65 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=26.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
..|.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 67 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 67 SKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp BCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 3589999999999999999876654 3344566654
No 42
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=96.61 E-value=0.014 Score=48.55 Aligned_cols=35 Identities=9% Similarity=0.143 Sum_probs=26.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
..|.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 63 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 63 LKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp BCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 3589999999999999999876654 3345666654
No 43
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.60 E-value=0.0076 Score=48.06 Aligned_cols=36 Identities=19% Similarity=0.041 Sum_probs=26.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 354 (505)
..|.|||+|.+..+|..|.+.+... ....+.|+.|-
T Consensus 53 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 53 HRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 3589999999999999999876543 33455666653
No 44
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=96.58 E-value=0.01 Score=48.73 Aligned_cols=36 Identities=14% Similarity=0.329 Sum_probs=27.1
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEe
Q 010628 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQV 238 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 238 (505)
.+..+||.|.|||.+.++ +.|+++|++. |.|.++.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~~~i 72 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTD---TDLASTFLPF--GNVISAKV 72 (118)
T ss_dssp CCCSEEEEEECSCTTCCH---HHHHHHTTTS--CEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEE
Confidence 345689999999998765 7789999875 45655544
No 45
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=96.58 E-value=0.0085 Score=47.04 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=28.2
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeE
Q 010628 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (505)
....+||.|.|||.+.++ +.|+++|+.. |.|.++.+.
T Consensus 13 ~~~~~~l~v~nlp~~~~~---~~l~~~F~~~--G~i~~v~i~ 49 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVRE---EILYELFLQA--GPLTKVTIC 49 (95)
T ss_dssp TTGGGEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHHhc--CCEEEEEEE
Confidence 356789999999998765 6788999876 456665554
No 46
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=96.57 E-value=0.011 Score=45.73 Aligned_cols=36 Identities=19% Similarity=0.152 Sum_probs=27.3
Q ss_pred CcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEe
Q 010628 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (505)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (505)
+.+||.|.|||.+.++ +.|+++|+.. |.|.++.+.+
T Consensus 5 ~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 40 (89)
T 3ucg_A 5 DARSIYVGNVDYGATA---EELEAHFHGC--GSVNRVTILC 40 (89)
T ss_dssp HHTEEEEESCCTTCCH---HHHHHHHGGG--CCEEEEEEEE
T ss_pred cCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEe
Confidence 3579999999998765 6788999876 4566666553
No 47
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.57 E-value=0.011 Score=47.15 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=28.1
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEe
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (505)
...+||.|.|||.+.++ +.|+++|+.. |.|.++.+.+
T Consensus 13 ~~~~~l~v~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 49 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTE---QDLKEYFSTF--GEVLMVQVKK 49 (103)
T ss_dssp CCCCCEEEESCCSSCCH---HHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCEEEEEcCCCcCCH---HHHHHHHHhc--CCeEEEEEEe
Confidence 45689999999998765 6788999876 4566666553
No 48
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.57 E-value=0.016 Score=46.22 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=28.8
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEe
Q 010628 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (505)
....+||.|.|||.+.++ +.|+++|+.. + |.++.+.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--g-i~~v~i~~ 48 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQ---GDIDAIFKDL--S-IRSVRLVR 48 (103)
T ss_dssp SSSCEEEEEESCCTTCCH---HHHHHHTTTS--C-EEEEEEEE
T ss_pred CCCCeEEEEeCCCCCCCH---HHHHHHHHhC--C-ceEEEEee
Confidence 345789999999998875 7789999876 4 76766654
No 49
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=96.56 E-value=0.013 Score=50.84 Aligned_cols=80 Identities=16% Similarity=0.166 Sum_probs=57.2
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEecchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccc
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMKT 278 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~L~~l~~~r~~~~~~le~~~~k~~k~~~~rp~~k~ 278 (505)
...+||.|.|||.+.++ +.|+++|+.. +.|.++.+.+|-.
T Consensus 37 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~~----------------------------------- 76 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTE---EQIYELFSKS--GDIKKIIMGLDKM----------------------------------- 76 (156)
T ss_dssp TTCCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECTT-----------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecCC-----------------------------------
Confidence 35689999999998765 6788999876 4566666654210
Q ss_pred ccccCCCCcccHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCC
Q 010628 279 GFLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (505)
Q Consensus 279 ~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APe 355 (505)
... ..+.|||+|.+..+|..|.+.+... ....+.|+.|..
T Consensus 77 ----------------------------------~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 77 ----------------------------------KKT---ACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp ----------------------------------TCC---EEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred ----------------------------------CCc---cceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 000 3589999999999999999976554 345567777643
No 50
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.56 E-value=0.016 Score=46.91 Aligned_cols=36 Identities=25% Similarity=0.285 Sum_probs=26.7
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeE
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (505)
...+||.|.|||.+.++ +.|+++|+.. |.|.++.+.
T Consensus 13 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~ 48 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEE---EALGEVLQQF--GDLKYVRVV 48 (111)
T ss_dssp CCCCCEEEESCCTTCCH---HHHHHHHHTT--SCEEEEECC
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHhc--CCeEEEEEE
Confidence 35689999999998765 6788888775 455555543
No 51
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.56 E-value=0.016 Score=46.25 Aligned_cols=38 Identities=21% Similarity=0.457 Sum_probs=28.2
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhh-cCCCceeeeEeEe
Q 010628 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLV-NHPNHYLTHQVVV 240 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~-~~p~~v~~v~i~~ 240 (505)
....+||.|.|||.+.++ +.|+++|+. . |.|.++.+.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~~--G~v~~v~i~~ 44 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDD---GMLYEFFVKVY--PSCRGGKVVL 44 (104)
T ss_dssp SSCCCCEEEECCCTTCCH---HHHHHHHHHHC--TTEEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHHhC--CCeEEEEEEE
Confidence 345689999999998765 678888887 5 4566666543
No 52
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=96.53 E-value=0.0096 Score=45.90 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=29.1
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEe
Q 010628 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (505)
....+||.|.|||.+.++ +.|+++|+.. |.|.++.+.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 45 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSK---KDLKDYFTKF--GEVVDCTIKM 45 (87)
T ss_dssp CSCTTEEEEECCCTTCCH---HHHHHHHTTT--SCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEee
Confidence 456789999999998865 7788999775 5676666654
No 53
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.52 E-value=0.015 Score=46.68 Aligned_cols=38 Identities=13% Similarity=0.214 Sum_probs=29.3
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEe
Q 010628 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (505)
....+||.|.|||.+.++ +.|+++|+.. |.|.++.+.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te---~~L~~~F~~~--G~v~~v~i~~ 45 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATL---DDIKEWLEDK--GQVLNIQMRR 45 (103)
T ss_dssp CSGGGCEEEECCCTTCCH---HHHHHHHHTS--SCEEEEEEEC
T ss_pred cCCCCEEEEECCCCCCCH---HHHHHHHhhc--CCEEEEEEEE
Confidence 345789999999998765 7788999875 5676766653
No 54
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=96.52 E-value=0.012 Score=49.22 Aligned_cols=44 Identities=11% Similarity=0.176 Sum_probs=34.7
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCCCCCeecCC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPRDVYWQN 363 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP~DIiW~N 363 (505)
.|.|||+|.+..+|..|.+.+... ....+.|+.|-.++|...+.
T Consensus 72 rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~~~~~~ 117 (127)
T 2a3j_A 72 SGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQSQVAED 117 (127)
T ss_dssp CCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCHHHHCC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcchhcccc
Confidence 589999999999999999887654 34567888887777766543
No 55
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.52 E-value=0.018 Score=45.63 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=25.2
Q ss_pred CeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
+.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 52 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 52 DYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp SEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred CeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 69999999999999999876553 3345566655
No 56
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.50 E-value=0.0072 Score=48.35 Aligned_cols=37 Identities=11% Similarity=0.065 Sum_probs=28.8
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCCC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP 356 (505)
.|.|||+|.+..+|..|.+.+... ....+.++.|-.+
T Consensus 50 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 88 (104)
T 1p1t_A 50 KGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE 88 (104)
T ss_dssp EEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCc
Confidence 589999999999999999876653 3456777776543
No 57
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.49 E-value=0.014 Score=46.11 Aligned_cols=37 Identities=11% Similarity=0.127 Sum_probs=28.1
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEe
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (505)
...+||.|.|||.+.++ +.|+++|+.. |.|.++.+.+
T Consensus 3 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 39 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTE---ETLKGVFSKV--GAIKSCTISK 39 (98)
T ss_dssp CCCCCEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEe
Confidence 35689999999998765 6788888875 5566666654
No 58
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.49 E-value=0.018 Score=45.86 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=27.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCCC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP 356 (505)
.|.|||+|.+..+|..|.+.+... ....+.|+.|-.+
T Consensus 55 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2cqi_A 55 DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP 93 (103)
T ss_dssp CCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCT
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCC
Confidence 479999999999999999876543 3445677766433
No 59
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=96.47 E-value=0.015 Score=46.70 Aligned_cols=39 Identities=13% Similarity=0.031 Sum_probs=28.7
Q ss_pred CCCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEe
Q 010628 197 RRPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (505)
Q Consensus 197 ~~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (505)
.....++|.|.|||.+.++ +.|+++|+.. |.|.++.+.+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 63 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSD---ADIQELFAEF--GTLKKAAVHY 63 (107)
T ss_dssp CCCCSEEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEE
Confidence 3456789999999998765 6788888875 5566666543
No 60
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.45 E-value=0.02 Score=45.27 Aligned_cols=36 Identities=11% Similarity=0.108 Sum_probs=28.3
Q ss_pred CeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCCC
Q 010628 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP 356 (505)
+.|||+|++..+|..|.+.+... ....+.|+.|-.+
T Consensus 52 g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 52 GFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp TEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 79999999999999999877654 3456778777543
No 61
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=96.42 E-value=0.018 Score=48.28 Aligned_cols=34 Identities=15% Similarity=0.081 Sum_probs=26.5
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
.|.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 88 ~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 88 RGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 589999999999999999976654 3345666655
No 62
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.41 E-value=0.014 Score=43.70 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=25.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC-CCCCceeeeC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR-NPTLWLTEWA 353 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~-~~~~~~v~~A 353 (505)
..|.|||+|.+..+|..|.+..... +...+.++.|
T Consensus 41 ~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 41 SRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred cCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 3589999999999999999876511 2344555554
No 63
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=96.40 E-value=0.0086 Score=47.75 Aligned_cols=34 Identities=12% Similarity=-0.068 Sum_probs=27.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CC-CCceeeeC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NP-TLWLTEWA 353 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~-~~~~v~~A 353 (505)
.|.|||+|.+..+|+.|.+.+... .. ..+.|+.|
T Consensus 54 kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a 90 (100)
T 3ns6_A 54 KGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTM 90 (100)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEES
T ss_pred ceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEEC
Confidence 589999999999999999877654 23 45677765
No 64
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=96.39 E-value=0.017 Score=47.18 Aligned_cols=36 Identities=8% Similarity=0.106 Sum_probs=28.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APe 355 (505)
.|.|||+|.+..+|..|.+.+.+. ....+.++.|-.
T Consensus 47 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 47 RGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 479999999999999999977654 345677777653
No 65
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.37 E-value=0.026 Score=45.51 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=26.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
.+.|||+|++..+|..|.+.+... ....+.|+.|
T Consensus 61 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 61 PPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 589999999999999999876654 2344566655
No 66
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=96.36 E-value=0.015 Score=49.20 Aligned_cols=35 Identities=11% Similarity=0.214 Sum_probs=26.2
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEe
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQV 238 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 238 (505)
...+||.|.|||.+.++ +.|+++|+.. |.|.++.+
T Consensus 61 ~~~~~l~v~nlp~~~~~---~~l~~~f~~~--G~i~~v~i 95 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDD---KVLHAAFIPF--GDITDIQI 95 (140)
T ss_dssp SSCCEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEC
T ss_pred CCCcEEEEEeCCCCCCH---HHHHHHHHhc--CCEEEEEE
Confidence 35689999999998765 6788888876 45555444
No 67
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=96.36 E-value=0.024 Score=49.56 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=69.7
Q ss_pred CcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEecchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccc
Q 010628 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMKTG 279 (505)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~L~~l~~~r~~~~~~le~~~~k~~k~~~~rp~~k~~ 279 (505)
.++||.|.|||.+.++ +.|+++|+.. |.|.++.+.+|-.
T Consensus 2 ~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~~~------------------------------------ 40 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSE---KDLRELFEQY--GAVYEINVLRDRS------------------------------------ 40 (175)
T ss_dssp CCEEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEEECS------------------------------------
T ss_pred CceEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEecCC------------------------------------
Confidence 4689999999998875 6788899876 5577776654310
Q ss_pred cccCCCCcccHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeCCHHHHHHHHHhcccCC-----CCCceeeeCC
Q 010628 280 FLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTRN-----PTLWLTEWAS 354 (505)
Q Consensus 280 ~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~-----~~~~~v~~AP 354 (505)
.| .+ ...|.|||+|.+..+|..|.+.+.... ...+.+..+.
T Consensus 41 ----~~-----------------------------~~-~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~ 86 (175)
T 3nmr_A 41 ----QN-----------------------------PP-QSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPAD 86 (175)
T ss_dssp ----SS-----------------------------SC-EEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECG
T ss_pred ----CC-----------------------------CC-CcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcccc
Confidence 00 00 136899999999999999998765432 2334444332
Q ss_pred -------CCCCeecCCCCCChhHHHHHHHH
Q 010628 355 -------EPRDVYWQNLAIPYVSLSVRRLI 377 (505)
Q Consensus 355 -------eP~DIiW~NL~~s~~~r~~R~~~ 377 (505)
+..-|+=.||..+..+..++.++
T Consensus 87 ~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F 116 (175)
T 3nmr_A 87 SEKNNAVEDRKLFIGMISKKCTENDIRVMF 116 (175)
T ss_dssp GGCCSCGGGSEEEEESCCTTCCHHHHHHHH
T ss_pred ccccccCCCCeEEEcCCCCcCCHHHHHHHH
Confidence 33457888888777666666644
No 68
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.35 E-value=0.023 Score=46.14 Aligned_cols=35 Identities=14% Similarity=-0.018 Sum_probs=26.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
..|.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 64 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (113)
T 2cpe_A 64 PKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 100 (113)
T ss_dssp BCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECS
T ss_pred eeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEEC
Confidence 4689999999999999999876654 3344566655
No 69
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=96.34 E-value=0.025 Score=46.89 Aligned_cols=35 Identities=14% Similarity=0.041 Sum_probs=27.1
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 354 (505)
.|.|||+|.+..+|..|.+.+... ....+.|+.|.
T Consensus 76 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 76 LGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred eeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 589999999999999999876543 34556676654
No 70
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.32 E-value=0.016 Score=46.94 Aligned_cols=34 Identities=15% Similarity=0.046 Sum_probs=26.4
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
.|.|||+|.+..+|..|.+.+... +...+.|+.|
T Consensus 69 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 69 KGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 589999999999999999876654 3445666665
No 71
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.31 E-value=0.04 Score=42.66 Aligned_cols=34 Identities=12% Similarity=0.016 Sum_probs=26.2
Q ss_pred CeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCC
Q 010628 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 354 (505)
+.|||+|.+..+|..|.+.+... ....+.|+.|-
T Consensus 43 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 43 NYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 58999999999999999876653 34556777653
No 72
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=96.28 E-value=0.01 Score=46.59 Aligned_cols=35 Identities=20% Similarity=0.070 Sum_probs=25.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
..+.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 56 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 56 PTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred EeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 3589999999999999999876554 2344555554
No 73
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.25 E-value=0.02 Score=43.85 Aligned_cols=36 Identities=6% Similarity=0.201 Sum_probs=27.1
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeE
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (505)
...+||.|.|||.+.++ +.|+++|+.. |.|.++.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~i~~~~i~ 38 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTD---QDLVKLCQPY--GKIVSTKAI 38 (85)
T ss_dssp CCCCEEEEESCCTTCCH---HHHHTTSTTT--SCEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEE
Confidence 34679999999998875 6788999875 456665554
No 74
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=96.22 E-value=0.029 Score=51.30 Aligned_cols=102 Identities=15% Similarity=0.148 Sum_probs=70.0
Q ss_pred CcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEecchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccc
Q 010628 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMKTG 279 (505)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~L~~l~~~r~~~~~~le~~~~k~~k~~~~rp~~k~~ 279 (505)
..+||.|.|||.+.++ +.|+++|++. |.|.++.+++|-.
T Consensus 14 p~~tlfVgnLp~~~te---~~L~~~F~~~--G~I~~v~i~~d~~------------------------------------ 52 (213)
T 4f02_A 14 PMASLYVGDLHPDVTE---AMLYEKFSPA--GPILSIRVCRDMI------------------------------------ 52 (213)
T ss_dssp -CCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECTT------------------------------------
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHhh--CCEEEEEEecccC------------------------------------
Confidence 4579999999998875 7889999886 5677777654310
Q ss_pred cccCCCCcccHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeCCHHHHHHHHHhcccCC--CCCceeeeCC---
Q 010628 280 FLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTRN--PTLWLTEWAS--- 354 (505)
Q Consensus 280 ~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~AP--- 354 (505)
.. ...|.|||+|.+..+|..|.+.+.... ...+.+..+.
T Consensus 53 ---------------------------------tg---~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~ 96 (213)
T 4f02_A 53 ---------------------------------TR---RSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDP 96 (213)
T ss_dssp ---------------------------------TC---CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCT
T ss_pred ---------------------------------CC---CccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccc
Confidence 00 035899999999999999998765532 2233444443
Q ss_pred -----CCCCeecCCCCCChhHHHHHHHHH
Q 010628 355 -----EPRDVYWQNLAIPYVSLSVRRLIM 378 (505)
Q Consensus 355 -----eP~DIiW~NL~~s~~~r~~R~~~~ 378 (505)
...-|+=.||..+..+.-++.++.
T Consensus 97 ~~~~~~~~~l~v~nl~~~~t~~~l~~~F~ 125 (213)
T 4f02_A 97 SLRKSGVGNIFIKNLDKSIDNKALYDTFS 125 (213)
T ss_dssp HHHHHCTTEEEEESCCTTCCHHHHHHHHG
T ss_pred cccccccccceECCcccccHHHHHHHHHh
Confidence 234577888887777766666543
No 75
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=96.22 E-value=0.0095 Score=46.23 Aligned_cols=37 Identities=8% Similarity=-0.089 Sum_probs=26.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCCC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP 356 (505)
..|.|||+|++.. |..|.+.+... ....+.++.|..+
T Consensus 42 ~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 42 PKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp CCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 3589999999999 99998876654 3455677776443
No 76
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.22 E-value=0.014 Score=47.39 Aligned_cols=36 Identities=11% Similarity=0.046 Sum_probs=27.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 354 (505)
..|.|||+|.+..+|+.|.+.+... ....+.|+.|-
T Consensus 62 ~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~ 99 (111)
T 2cpi_A 62 PSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGT 99 (111)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCC
T ss_pred CCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecc
Confidence 3589999999999999999976553 33456666653
No 77
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.20 E-value=0.027 Score=43.66 Aligned_cols=33 Identities=15% Similarity=0.103 Sum_probs=25.3
Q ss_pred eEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCC
Q 010628 322 AAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (505)
Q Consensus 322 ~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 354 (505)
.|||+|.+..+|..|.+.+... ....+.++.|-
T Consensus 45 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 45 YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp CEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 8999999999999999876654 34456666653
No 78
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.18 E-value=0.017 Score=44.84 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=27.1
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEe
Q 010628 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (505)
....++|.|.|||.+.++ +.|+++|+.. .+.++.+.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~---~~l~~~F~~~---~i~~v~i~~ 43 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTE---KNVMEFLAPL---KPVAIRIVR 43 (91)
T ss_dssp CCCCCEEEEECCCSSCCH---HHHHHHHTTS---CCSEEEEEE
T ss_pred CCCccEEEEECCCCCCCH---HHHHHHHhhC---CceEEEEEE
Confidence 346789999999998765 6788999775 354555543
No 79
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.17 E-value=0.026 Score=44.41 Aligned_cols=33 Identities=15% Similarity=0.039 Sum_probs=25.9
Q ss_pred CeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
|.|||+|.+..+|+.|.+.+... ....+.|+.|
T Consensus 53 g~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 53 LKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 58999999999999999876653 3445677765
No 80
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.17 E-value=0.026 Score=45.55 Aligned_cols=34 Identities=6% Similarity=0.036 Sum_probs=25.8
Q ss_pred CeEEEEeCCHHHHHHHHHhcccCC--C-----CCceeeeCC
Q 010628 321 PAAFVSFNSRWGAAVCAQTQQTRN--P-----TLWLTEWAS 354 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~~~~~~--~-----~~~~v~~AP 354 (505)
+.|||+|.+..+|+.|.+.+.... . ..+.|+.|-
T Consensus 51 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 51 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 699999999999999999765431 1 456777653
No 81
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=96.15 E-value=0.022 Score=49.50 Aligned_cols=79 Identities=10% Similarity=-0.121 Sum_probs=56.2
Q ss_pred CcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEecchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccc
Q 010628 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMKTG 279 (505)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~L~~l~~~r~~~~~~le~~~~k~~k~~~~rp~~k~~ 279 (505)
..++|.|.|||.+.++ +.|+++|+...+..|.++.+++|-.
T Consensus 54 ~~~~lfVgnLp~~~te---~~L~~~F~~~G~i~v~~v~i~~d~~------------------------------------ 94 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTD---QQLIQVIRSIGVYDVVELKFAENRA------------------------------------ 94 (156)
T ss_dssp --CEEEEECCCTTCCH---HHHHHHHHHTTCCCEEEEEEEECTT------------------------------------
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHHCCccEEEEEEEecCC------------------------------------
Confidence 4589999999998875 6788899886433677777665410
Q ss_pred cccCCCCcccHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 280 FLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 280 ~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
... ..|.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 95 ---------------------------------tg~---skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 95 ---------------------------------NGQ---SKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp ---------------------------------TCC---EEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred ---------------------------------CCc---cceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 000 3589999999999999999987654 3345666665
No 82
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.14 E-value=0.03 Score=42.71 Aligned_cols=28 Identities=14% Similarity=0.052 Sum_probs=22.4
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhhc
Q 010628 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~ 228 (505)
....+||.|.|||.+.++ +.|+++|+..
T Consensus 9 ~~~~~~l~V~~l~~~~t~---~~l~~~f~~~ 36 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITE---TDLRNHFYQF 36 (85)
T ss_dssp CSSCCCEEEECCTTTSCH---HHHHHHHHTT
T ss_pred CCCccEEEEcCCCCCCCH---HHHHHHHHhC
Confidence 456789999999998765 6788888765
No 83
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.13 E-value=0.028 Score=45.64 Aligned_cols=37 Identities=14% Similarity=0.092 Sum_probs=27.8
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeE
Q 010628 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (505)
....+||.|.|||.+.++ +.|+++|+.. +.|.++.+.
T Consensus 12 ~~~~~~l~V~nlp~~~~~---~~l~~~f~~~--G~i~~~~i~ 48 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGW---KKLKEVFSMA--GVVVRADIL 48 (114)
T ss_dssp CCCCSCEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEE
Confidence 345689999999998765 6788999875 456665554
No 84
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=96.13 E-value=0.02 Score=42.56 Aligned_cols=20 Identities=20% Similarity=0.102 Sum_probs=17.9
Q ss_pred CCCeEEEEeCCHHHHHHHHH
Q 010628 319 IMPAAFVSFNSRWGAAVCAQ 338 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q 338 (505)
..|.|||+|++..+|+.|.+
T Consensus 40 ~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 40 HRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp SCBEEEEECSCHHHHHHHHS
T ss_pred cCcEEEEEECCHHHHHHHHH
Confidence 35899999999999999887
No 85
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.13 E-value=0.045 Score=43.76 Aligned_cols=42 Identities=17% Similarity=0.012 Sum_probs=28.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCCCCCeecC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPRDVYWQ 362 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP~DIiW~ 362 (505)
..|.|||+|++..+|..|.+. ... ....+.|..| .+.++.|.
T Consensus 56 ~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~-~~~~~~~~ 99 (104)
T 1wg5_A 56 STGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS-SRAEVRTS 99 (104)
T ss_dssp BCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE-CTTTSCCS
T ss_pred cceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC-CHHHHHHh
Confidence 368999999999999999987 332 2234566665 34555443
No 86
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.12 E-value=0.044 Score=44.02 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=25.6
Q ss_pred CeEEEEeCCHHHHHHHHHhcccC----CCCCceeeeCC
Q 010628 321 PAAFVSFNSRWGAAVCAQTQQTR----NPTLWLTEWAS 354 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~~~~~----~~~~~~v~~AP 354 (505)
|.|||+|++..+|..|.+.+... ....+.++.|-
T Consensus 52 g~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 52 RQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp TEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 69999999999999998865432 34556677664
No 87
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.11 E-value=0.042 Score=44.60 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=27.7
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEe
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (505)
...+||.|.|||.+.++ +.|+++|+.. |.|.++.+.+
T Consensus 23 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~~~i~~ 59 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDE---QELENMLKPF--GQVISTRILR 59 (114)
T ss_dssp CCTTEEEEESCCTTCCH---HHHHHTTTTT--SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEE
Confidence 45689999999998765 6788999875 4566655543
No 88
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=96.09 E-value=0.03 Score=44.66 Aligned_cols=35 Identities=11% Similarity=-0.041 Sum_probs=25.9
Q ss_pred CCCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeee
Q 010628 197 RRPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTH 236 (505)
Q Consensus 197 ~~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v 236 (505)
..+.+++|.|.|+|.+.++ +.|++.|+.. |.|.++
T Consensus 17 ~~~ps~~l~V~NLp~~~te---~~L~~lF~~f--G~V~~v 51 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVE---ADLVEALQEF--GPISYV 51 (100)
T ss_dssp CCCCCSEEEEESCCTTCCH---HHHHHHHGGG--SCEEEE
T ss_pred cCCCCcEEEEeCCCCCCCH---HHHHHHHhcc--CCEEEE
Confidence 4556789999999998765 6788888775 455443
No 89
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.06 E-value=0.031 Score=44.37 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=28.2
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCCC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP 356 (505)
.+.|||+|.+..+|..|.+.+... ....+.|+.|-.+
T Consensus 54 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 54 KGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp EEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 589999999999999999876654 3345677766433
No 90
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=96.06 E-value=0.014 Score=45.52 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=24.9
Q ss_pred CCCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeE
Q 010628 197 RRPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQ 237 (505)
Q Consensus 197 ~~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~ 237 (505)
..++.+||.|.|||.+.++ +.|+++|++. |.|.++.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te---~~L~~~F~~~--G~i~~v~ 42 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTA---EELQQFFCQY--GEVVDVF 42 (89)
T ss_dssp ----CCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHhcc--CCEEEEE
Confidence 3456789999999998875 7788999875 4454433
No 91
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.05 E-value=0.034 Score=43.23 Aligned_cols=32 Identities=13% Similarity=0.048 Sum_probs=24.5
Q ss_pred eEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 322 AAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 322 ~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
.|||+|++..+|..|.+.+... ....+.|+.|
T Consensus 46 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 46 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 8999999999999999876543 3345666665
No 92
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=96.04 E-value=0.052 Score=49.27 Aligned_cols=59 Identities=10% Similarity=0.058 Sum_probs=39.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCC-----------------CCCCeecCCCCCChhHHHHHHHH
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS-----------------EPRDVYWQNLAIPYVSLSVRRLI 377 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP-----------------eP~DIiW~NL~~s~~~r~~R~~~ 377 (505)
..|.|||+|.+..+|..|.+.+... ....+.+..+. ...-|+-.||.....+.-++.++
T Consensus 69 ~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f 146 (216)
T 2qfj_A 69 HKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVF 146 (216)
T ss_dssp CCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHH
T ss_pred cCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHH
Confidence 3689999999999999999876553 23345554432 22457777887666555555544
No 93
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=96.03 E-value=0.022 Score=45.23 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=25.0
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeE
Q 010628 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (505)
....+||.|.|||.+.++ +.|+++|++. | |.++.+.
T Consensus 16 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G-i~~v~i~ 51 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTE---ESIKEFFRGL--N-ISAVRLP 51 (100)
T ss_dssp ----CEEEESCCSSCCSS---SHHHHHSCSS--C-EEEEECS
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHhc--C-CeEEEEE
Confidence 345789999999998865 5788899875 4 6665553
No 94
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=96.03 E-value=0.034 Score=46.98 Aligned_cols=34 Identities=18% Similarity=-0.014 Sum_probs=26.4
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
.|.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 84 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 84 RGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 589999999999999999976653 3345666665
No 95
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=96.01 E-value=0.029 Score=45.35 Aligned_cols=37 Identities=22% Similarity=0.212 Sum_probs=27.9
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCCC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP 356 (505)
.+.|||+|.+..+|..|.+.+... ....+.|+.|-+|
T Consensus 62 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 62 KGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp TTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 379999999999999999876654 3455677776433
No 96
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.00 E-value=0.0098 Score=46.03 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=21.5
Q ss_pred CcceEEEEcCCCCCCccHHHHHHHhhhhc
Q 010628 200 DQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (505)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~ 228 (505)
..+||.|.|||.+.++ +.|+++|+..
T Consensus 4 ~~~~l~V~nLp~~~te---~~l~~~F~~~ 29 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTE---DELREFFSQY 29 (88)
T ss_dssp CCCEEEEESCCSSSCH---HHHHHHSTTT
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHHc
Confidence 4689999999998775 6788888765
No 97
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.043 Score=47.36 Aligned_cols=57 Identities=18% Similarity=0.318 Sum_probs=36.8
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCC--------CCCCeecCCCCCChhHHHHHHH
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS--------EPRDVYWQNLAIPYVSLSVRRL 376 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP--------eP~DIiW~NL~~s~~~r~~R~~ 376 (505)
.|.|||+|.+..+|..|.+.+... ....+.++.|. +...++=.||.....+..++..
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~ 107 (166)
T 3md3_A 41 VNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNA 107 (166)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHH
Confidence 589999999999999999776554 22334444442 2223666777766555555543
No 98
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.99 E-value=0.022 Score=46.34 Aligned_cols=35 Identities=20% Similarity=0.155 Sum_probs=27.7
Q ss_pred CeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCC
Q 010628 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APe 355 (505)
+.|||+|.+..+|..|.+.+... ....+.|+.|+.
T Consensus 47 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 47 ITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp SCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 68999999999999999887654 345567777754
No 99
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.99 E-value=0.045 Score=42.87 Aligned_cols=36 Identities=8% Similarity=0.021 Sum_probs=28.0
Q ss_pred CeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCCC
Q 010628 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP 356 (505)
+.|||+|.+..+|..|.+.+... ....+.|+.|.+.
T Consensus 55 ~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 55 AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 44999999999999999876654 3456788887654
No 100
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.98 E-value=0.042 Score=44.26 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=26.4
Q ss_pred CeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCC
Q 010628 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APe 355 (505)
|.|||+|.+..+|..|.+.+... ....+.|+.|-.
T Consensus 62 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 62 GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 69999999999999999876654 234566666543
No 101
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.97 E-value=0.052 Score=42.63 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=26.9
Q ss_pred CeEEEEeCCHHHHHHHHHhcccC--C--CCCceeeeCC
Q 010628 321 PAAFVSFNSRWGAAVCAQTQQTR--N--PTLWLTEWAS 354 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~~~~~--~--~~~~~v~~AP 354 (505)
+.|||+|.+..+|+.|.+.+... . ...+.|+.|-
T Consensus 54 g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 54 SFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 69999999999999999876654 3 4567777753
No 102
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=95.94 E-value=0.014 Score=43.41 Aligned_cols=21 Identities=10% Similarity=0.075 Sum_probs=18.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHh
Q 010628 319 IMPAAFVSFNSRWGAAVCAQT 339 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~ 339 (505)
..|.|||+|++..+|..|.+.
T Consensus 40 ~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 40 RRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp SCCCEEEECSSSHHHHHHHTT
T ss_pred cCCEEEEEECCHHHHHHHHHh
Confidence 368999999999999999885
No 103
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=95.94 E-value=0.039 Score=43.97 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=25.8
Q ss_pred CeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCC
Q 010628 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APe 355 (505)
+.|||+|.+..+|..|.+.+... ....+.|+.|-.
T Consensus 46 ~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 46 DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 48999999999999999876543 334566666543
No 104
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=95.94 E-value=0.027 Score=50.09 Aligned_cols=42 Identities=14% Similarity=0.039 Sum_probs=31.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCCCCCeec
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPRDVYW 361 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP~DIiW 361 (505)
.|.|||+|.+..+|..|.+.+... ....+.|+.|..+....|
T Consensus 129 kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~~~~~ 172 (177)
T 2f3j_A 129 LGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDLEH 172 (177)
T ss_dssp SCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGGGGCC
T ss_pred eeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCCC
Confidence 589999999999999999976654 345677887765444333
No 105
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.93 E-value=0.056 Score=46.32 Aligned_cols=37 Identities=22% Similarity=0.112 Sum_probs=28.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCCC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP 356 (505)
.|.|||+|.+..+|..|.+.+... ....+.|+.|-++
T Consensus 110 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 110 PGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp CSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 379999999999999999876654 3456777776443
No 106
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=95.91 E-value=0.061 Score=47.95 Aligned_cols=103 Identities=8% Similarity=0.086 Sum_probs=67.0
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEecchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 010628 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMK 277 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~L~~l~~~r~~~~~~le~~~~k~~k~~~~rp~~k 277 (505)
....+||.|.|||.+.++ +.|+++|+.. |.|.++.+..|-.
T Consensus 10 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~~~---------------------------------- 50 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTD---ESLRSHFEQW--GTLTDCVVMRDPN---------------------------------- 50 (196)
T ss_dssp CGGGGEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECTT----------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEEcCC----------------------------------
Confidence 346789999999998865 7788999876 5566666654310
Q ss_pred cccccCCCCcccHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeCCHHHHHHHHHhcccC-CCCCceeeeCC--
Q 010628 278 TGFLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR-NPTLWLTEWAS-- 354 (505)
Q Consensus 278 ~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~-~~~~~~v~~AP-- 354 (505)
.. ...|.|||+|.+..+|..|.+..... ....+.+..|.
T Consensus 51 -----------------------------------~g---~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~ 92 (196)
T 1l3k_A 51 -----------------------------------TK---RSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSR 92 (196)
T ss_dssp -----------------------------------TC---CEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC-
T ss_pred -----------------------------------CC---CccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCc
Confidence 00 03589999999999999999762110 12223343332
Q ss_pred ----------CCCCeecCCCCCChhHHHHHHHH
Q 010628 355 ----------EPRDVYWQNLAIPYVSLSVRRLI 377 (505)
Q Consensus 355 ----------eP~DIiW~NL~~s~~~r~~R~~~ 377 (505)
.+.-|+=.||.....+..++.++
T Consensus 93 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F 125 (196)
T 1l3k_A 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125 (196)
T ss_dssp ----------CCSEEEEECCTTTCCHHHHHHHH
T ss_pred ccccccccCCCcceEEEeCCCCCCCHHHHHHHH
Confidence 22457778887766666666544
No 107
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.89 E-value=0.02 Score=45.77 Aligned_cols=38 Identities=8% Similarity=0.112 Sum_probs=28.7
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEe
Q 010628 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (505)
....++|.|.|||.+.++ +.|+++|+.. |.|.++.+.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~v~~v~i~~ 50 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQ---ETLRSYFSQY--GEVVDCVIMK 50 (105)
T ss_dssp SSSSSEECCBSCCTTCCH---HHHHHHHHTT--SCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEee
Confidence 345789999999998765 6788899875 5666666553
No 108
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=95.89 E-value=0.026 Score=47.69 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=26.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
..|.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 88 ~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 88 SRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp CCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 3589999999999999999876654 3345667655
No 109
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=95.89 E-value=0.03 Score=44.00 Aligned_cols=40 Identities=20% Similarity=0.153 Sum_probs=30.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCCCCCe
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPRDV 359 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP~DI 359 (505)
.|.|||+|.+..+|..|.+.+.+. ....+.++.|-.+.+.
T Consensus 51 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 92 (97)
T 1nu4_A 51 RGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDI 92 (97)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCTH
T ss_pred CcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCcc
Confidence 479999999999999999876654 3455777777655543
No 110
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.87 E-value=0.056 Score=43.42 Aligned_cols=35 Identities=23% Similarity=0.232 Sum_probs=26.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcc--cC--CCCCceeeeC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQ--TR--NPTLWLTEWA 353 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~--~~--~~~~~~v~~A 353 (505)
..|.|||+|.+..+|..|.+.+. .. ....+.|+.|
T Consensus 51 ~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a 89 (109)
T 2dis_A 51 NRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWA 89 (109)
T ss_dssp TCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEES
T ss_pred cCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEc
Confidence 35899999999999999999774 22 3355677765
No 111
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.038 Score=43.44 Aligned_cols=33 Identities=9% Similarity=0.120 Sum_probs=25.8
Q ss_pred CeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
|.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 46 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 46 AFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp TEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 69999999999999999876553 2355666665
No 112
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=95.85 E-value=0.025 Score=45.80 Aligned_cols=36 Identities=8% Similarity=0.092 Sum_probs=25.7
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeE
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (505)
...+||.|.|||.+.++ +.|+++|+.. |.|.++.+.
T Consensus 23 ~~~~~lfV~nLp~~~te---~~L~~~F~~~--G~i~~v~i~ 58 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQ---EGLREYFGQF--GEVKECLVM 58 (109)
T ss_dssp ---CCEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHcc--CCeEEEEEE
Confidence 45689999999998765 6788999875 556655554
No 113
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.84 E-value=0.041 Score=45.39 Aligned_cols=34 Identities=12% Similarity=0.140 Sum_probs=25.4
Q ss_pred CeEEEEeCCHHHHHHHHHhccc----CCCCCceeeeCC
Q 010628 321 PAAFVSFNSRWGAAVCAQTQQT----RNPTLWLTEWAS 354 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~~~~----~~~~~~~v~~AP 354 (505)
|.|||+|++..+|..|.+.+.. -....+.|+.|-
T Consensus 68 G~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 68 NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp TEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred CEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 6999999999999999886542 234556677663
No 114
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=95.84 E-value=0.04 Score=45.48 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=27.3
Q ss_pred cceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEe
Q 010628 201 QFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (505)
Q Consensus 201 ~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (505)
.+||.|.|||.+.++ +.|+++|+.. |.|.++.+.+
T Consensus 36 ~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 70 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTA---QDLEAHFSSC--GSINRITILC 70 (124)
T ss_dssp HTEEEEEEECTTCCH---HHHHHHHHTT--SCEEEEEEEE
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEe
Confidence 579999999998765 6788999875 5676666654
No 115
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.82 E-value=0.041 Score=44.91 Aligned_cols=40 Identities=10% Similarity=0.085 Sum_probs=30.2
Q ss_pred CeEEEEeCCHHHHHHHHHhccc----CCCCCceeeeCCCCCCee
Q 010628 321 PAAFVSFNSRWGAAVCAQTQQT----RNPTLWLTEWASEPRDVY 360 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~~~~----~~~~~~~v~~APeP~DIi 360 (505)
|.|||+|.+..+|..|.+.+.. -....+.|+.|-...++.
T Consensus 63 g~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~~~ 106 (112)
T 1x4f_A 63 SQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLV 106 (112)
T ss_dssp TEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSSSS
T ss_pred CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccccccc
Confidence 7999999999999999987643 244567788776655554
No 116
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.81 E-value=0.047 Score=43.62 Aligned_cols=34 Identities=9% Similarity=0.093 Sum_probs=25.2
Q ss_pred CeEEEEeCCHHHHHHHHHhcccC----CCCCceeeeCC
Q 010628 321 PAAFVSFNSRWGAAVCAQTQQTR----NPTLWLTEWAS 354 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~~~~~----~~~~~~v~~AP 354 (505)
|.|||+|++..+|..|.+.+... ....+.|+.|-
T Consensus 52 g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 52 NQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp TEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 79999999999999998865421 33456666664
No 117
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=95.80 E-value=0.039 Score=44.37 Aligned_cols=29 Identities=24% Similarity=0.210 Sum_probs=23.3
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhhcC
Q 010628 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNH 229 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~ 229 (505)
....++|.|.|||.+.++ +.|+++|+...
T Consensus 8 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~g 36 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTM---EDVLNFFSDCR 36 (107)
T ss_dssp CSSCCEEEEECCCSSCCS---HHHHHHTTTSC
T ss_pred CCCccEEEEeCCCCCCCH---HHHHHHHHhcC
Confidence 346789999999998876 67889998753
No 118
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.76 E-value=0.046 Score=47.22 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=26.4
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
.|.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 112 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 112 RGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 589999999999999999876653 3345666654
No 119
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.74 E-value=0.023 Score=46.33 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=22.4
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhc
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~ 228 (505)
...+||.|.|||.+.++ +.|+++|++.
T Consensus 6 ~~~~~lfVgnLp~~~te---~~L~~~F~~~ 32 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDE---DEITASFRRF 32 (114)
T ss_dssp SCCCCEEEECCCTTCCH---HHHHHHTTTT
T ss_pred CCCCEEEEcCCCCCCCH---HHHHHHHHhc
Confidence 34689999999998875 7788999876
No 120
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=95.74 E-value=0.065 Score=43.09 Aligned_cols=36 Identities=11% Similarity=0.016 Sum_probs=29.4
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APe 355 (505)
.|.|||+|.+..+|..|.+.+... ....+.++.|++
T Consensus 56 ~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 56 AVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred cEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 589999999999999999988765 345667777764
No 121
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=95.71 E-value=0.041 Score=44.96 Aligned_cols=23 Identities=9% Similarity=0.102 Sum_probs=20.2
Q ss_pred CeEEEEeCCHHHHHHHHHhcccC
Q 010628 321 PAAFVSFNSRWGAAVCAQTQQTR 343 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~~~~~ 343 (505)
+.|||+|.+..+|+.|.+.+...
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g~ 74 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDNT 74 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTC
T ss_pred CEEEEEECCHHHHHHHHHHhCCC
Confidence 69999999999999999976653
No 122
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.70 E-value=0.049 Score=43.50 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=26.8
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEe
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (505)
...++|.|.|||.+.++ +.|+++|+... +.++.+++
T Consensus 13 ~~~~~l~V~nLp~~~te---~~l~~~F~~~G---~~~v~i~~ 48 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATE---NDIYNFFSPLN---PMRVHIEI 48 (102)
T ss_dssp SSSCEEEEESCCTTCCH---HHHHHSSCSCC---CSEEEEEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHcC---ceEEEEEE
Confidence 45689999999998875 78899998753 22555553
No 123
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=95.67 E-value=0.056 Score=47.25 Aligned_cols=38 Identities=8% Similarity=0.190 Sum_probs=28.1
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEe
Q 010628 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (505)
....+||.|.|||.+.++ +.|+++|+.. |.|.++.+..
T Consensus 69 ~~~~~~l~V~nLp~~~t~---~~L~~~F~~~--G~i~~v~i~~ 106 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQE---DEIQEKFCDY--GEIKNIHLNL 106 (165)
T ss_dssp CC-CEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHhhcC--CCEEEEEEEe
Confidence 345689999999998765 6788999876 5666666543
No 124
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=95.65 E-value=0.072 Score=50.29 Aligned_cols=58 Identities=12% Similarity=0.071 Sum_probs=46.9
Q ss_pred CeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCCCCCeecCCCCCChhHHHHHHHHH
Q 010628 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPRDVYWQNLAIPYVSLSVRRLIM 378 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP~DIiW~NL~~s~~~r~~R~~~~ 378 (505)
|.|||+|.+..+|..|.+.+... ....+.++.|.+..-|+=.||.....+..++.++.
T Consensus 59 g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~F~ 118 (261)
T 3sde_A 59 GFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFS 118 (261)
T ss_dssp TEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSSEEEEESCCTTCCHHHHHHHHG
T ss_pred cEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCCcccccCCCCCCCHHHHHHHHH
Confidence 79999999999999999876554 34567888888888899999988777777776654
No 125
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.64 E-value=0.042 Score=44.79 Aligned_cols=34 Identities=9% Similarity=0.144 Sum_probs=25.7
Q ss_pred cceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeE
Q 010628 201 QFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (505)
Q Consensus 201 ~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (505)
.++|.|.|||.+.++ +.|+++|+.. |.|.++.+.
T Consensus 27 ~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~ 60 (116)
T 1x4b_A 27 FRKLFIGGLSFETTE---ESLRNYYEQW--GKLTDCVVM 60 (116)
T ss_dssp HTEEEEECCTTCCCH---HHHHHHHTSS--CCCSEEEEE
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEE
Confidence 489999999998875 6788899775 455555554
No 126
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.63 E-value=0.044 Score=43.89 Aligned_cols=36 Identities=11% Similarity=0.004 Sum_probs=26.8
Q ss_pred CeEEEEeCCHHHHHHHHHhcccC----CCCCceeeeCCCC
Q 010628 321 PAAFVSFNSRWGAAVCAQTQQTR----NPTLWLTEWASEP 356 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~~~~~----~~~~~~v~~APeP 356 (505)
+.|||+|.+..+|..|.+.+... ....+.|+.|-..
T Consensus 53 g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 53 NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 57999999999999999876532 3455677776543
No 127
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=95.62 E-value=0.08 Score=42.33 Aligned_cols=37 Identities=8% Similarity=0.039 Sum_probs=28.8
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCC-CceeeeCCCC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPT-LWLTEWASEP 356 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~-~~~v~~APeP 356 (505)
.|.|||+|.+..+|..|.+.+... ... .+.|+.|-+-
T Consensus 61 ~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 61 KGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp CCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 589999999999999999987654 333 5777777543
No 128
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=95.62 E-value=0.06 Score=42.61 Aligned_cols=34 Identities=18% Similarity=0.093 Sum_probs=25.5
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
.|.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 37 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 37 PGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 72 (101)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEES
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEc
Confidence 479999999999999999876543 3344666654
No 129
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.59 E-value=0.027 Score=45.81 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=25.9
Q ss_pred cceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeE
Q 010628 201 QFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (505)
Q Consensus 201 ~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (505)
.+||.|.|||.+.++ +.|+++|+.. |.|.++.+.
T Consensus 25 ~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~ 58 (114)
T 2cq4_A 25 ARTVFCMQLAARIRP---RDLEDFFSAV--GKVRDVRII 58 (114)
T ss_dssp HTEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEC
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhC--CCEeEEEEE
Confidence 579999999998765 6788999775 456555543
No 130
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=95.55 E-value=0.095 Score=41.26 Aligned_cols=33 Identities=9% Similarity=0.089 Sum_probs=25.8
Q ss_pred CeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
|.|||+|.+..+|..|.+.+.+. ....+.++.|
T Consensus 58 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 58 AFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 79999999999999999976654 3445666665
No 131
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=95.53 E-value=0.064 Score=43.28 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=25.6
Q ss_pred CeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
|.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 66 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 66 GFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp TEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 69999999999999999876654 3345666665
No 132
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=95.52 E-value=0.033 Score=46.64 Aligned_cols=34 Identities=24% Similarity=0.119 Sum_probs=25.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC------CCCCceeeeC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR------NPTLWLTEWA 353 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~------~~~~~~v~~A 353 (505)
..|.|||+|.+. +|..|.+.+... ....+.|+.|
T Consensus 66 ~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a 105 (131)
T 2m2b_A 66 NRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFA 105 (131)
T ss_dssp BCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEEC
T ss_pred cceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEEC
Confidence 358999999999 999999887664 1234566655
No 133
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=95.48 E-value=0.023 Score=49.28 Aligned_cols=59 Identities=10% Similarity=0.079 Sum_probs=37.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccCCCCCceeeeCC------CCCCeecCCCCCChhHHHHHHHH
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTRNPTLWLTEWAS------EPRDVYWQNLAIPYVSLSVRRLI 377 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~~~~~~~v~~AP------eP~DIiW~NL~~s~~~r~~R~~~ 377 (505)
..|.|||+|.+..+|..|.+....-....+.+..|. .+.-|+=.||..+..+.-++.++
T Consensus 44 ~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F 108 (167)
T 2cjk_A 44 SRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFF 108 (167)
T ss_dssp CCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCHHHHHHCEEEEEEEECTTCCHHHHHHHH
T ss_pred ccceEEEEEccHHHHHHHHhcccccCCeEcccccccchhhccCCCeEEECCCCCCCCHHHHHHHH
Confidence 358999999999999999985322222333444432 23357777777766666666544
No 134
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=95.46 E-value=0.034 Score=47.11 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=27.6
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhcCCC-ceeeeEeEe
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPN-HYLTHQVVV 240 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~-~v~~v~i~~ 240 (505)
...++|.|.|||.+.++ +.|+++|+...+- .|.++.+++
T Consensus 42 ~~~~~lfVgnLp~~~te---~dL~~~F~~~G~v~~v~~v~i~~ 81 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSV---EDVQNFLSDCTIHDGAAGVHFIY 81 (136)
T ss_dssp CTTCEEEEESCCTTCCH---HHHHHHTTTCCCSSSSTTEEEEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHhCCcCceeEEEEEE
Confidence 35689999999998875 7789999876321 144555543
No 135
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.45 E-value=0.036 Score=45.21 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=22.5
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhc
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~ 228 (505)
...+||.|.|||.+.++ +.|+++|+..
T Consensus 13 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~ 39 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITK---MDVLQFLEGI 39 (114)
T ss_dssp SCCCEEEEESCCTTSCH---HHHHHHTTTS
T ss_pred CCccEEEEeCcCCcCCH---HHHHHHHHhC
Confidence 45789999999998765 6789999875
No 136
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=95.38 E-value=0.11 Score=48.05 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=25.4
Q ss_pred CCcceEEEEcCCC-CCCccHHHHHHHhhhhcCCCceeeeEe
Q 010628 199 PDQFTVLVRNVPP-DPDESVSELVEHFFLVNHPNHYLTHQV 238 (505)
Q Consensus 199 ~~~~TVlV~~IP~-~~~~~~~~~l~~~f~~~~p~~v~~v~i 238 (505)
+..+||.|.|||. +.++ +.|+++|+.. |.|.++.+
T Consensus 32 ~~~~~l~V~nLp~~~~te---~~L~~~F~~~--G~i~~v~i 67 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTP---QSLFILFGVY--GDVQRVKI 67 (229)
T ss_dssp CCCSEEEEESCCTTTCCH---HHHHHHHHHH--TCEEEEEE
T ss_pred CCCCEEEEeCCCcccCCH---HHHHHHHHhC--CCeEEEEE
Confidence 4578999999999 7765 6788888776 34544443
No 137
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=95.32 E-value=0.066 Score=42.33 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=20.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR 343 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~ 343 (505)
.|.|||+|.+..+|..|.+.+...
T Consensus 63 ~g~afV~f~~~~~A~~Ai~~l~g~ 86 (101)
T 2la4_A 63 KGCCFIKYDTHEQAAVCIVALANF 86 (101)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCC
Confidence 479999999999999999876543
No 138
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.30 E-value=0.037 Score=45.87 Aligned_cols=34 Identities=9% Similarity=0.046 Sum_probs=25.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
..|.|||+|.+..+|..|.+ +... ....+.|..|
T Consensus 66 ~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 66 ATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp EEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 35899999999999999999 5443 2345666665
No 139
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.29 E-value=0.024 Score=44.52 Aligned_cols=41 Identities=10% Similarity=0.147 Sum_probs=35.4
Q ss_pred CeEEEEeCCHHHHHHHHHhcccCC--CCCceeeeCCCCCCeec
Q 010628 321 PAAFVSFNSRWGAAVCAQTQQTRN--PTLWLTEWASEPRDVYW 361 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~APeP~DIiW 361 (505)
|.|||+|+++.+|+.|.+.+.... ...++++.|+..+|++=
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~~~ 89 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRELCE 89 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCCCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcceeE
Confidence 899999999999999998877653 46788999999999863
No 140
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.27 E-value=0.049 Score=44.18 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=25.6
Q ss_pred CcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeE
Q 010628 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (505)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (505)
..++|.|.|||.+.++ +.|+++|+.. .|.++.++
T Consensus 15 ~~~~v~V~nLp~~~te---~dl~~~F~~~---~v~~v~i~ 48 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAME---NDVRDFFHGL---RVDAVHLL 48 (109)
T ss_dssp HHHEEEEECCCSSCCH---HHHHHHTTTS---CCCEEEEC
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHhccC---CeeEEEEE
Confidence 4589999999998875 7889999875 34455554
No 141
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=95.22 E-value=0.1 Score=44.86 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=27.9
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEe
Q 010628 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (505)
....++|.|.|||.+.++ +.|+++|+.. |.|.++.+.+
T Consensus 84 ~~~~~~l~v~nl~~~~t~---~~l~~~f~~~--G~i~~~~i~~ 121 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDD---ETLRNAFKDF--PSYLSGHVMW 121 (166)
T ss_dssp CTTCEEEEEESCCTTCCH---HHHHHHHTTS--TTEEEEEEEE
T ss_pred CCCCceEEECCCCCCCCH---HHHHHHHhcc--CCeeEEEEEe
Confidence 345689999999998764 6788888765 5566665543
No 142
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=95.20 E-value=0.11 Score=49.38 Aligned_cols=59 Identities=12% Similarity=0.040 Sum_probs=47.2
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCCCCCeecCCCCCChhHHHHHHHHH
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPRDVYWQNLAIPYVSLSVRRLIM 378 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP~DIiW~NL~~s~~~r~~R~~~~ 378 (505)
.|.|||+|.+..+|..|.+.+... ....+.++.+|...-|+=.||..+..+.-++.++.
T Consensus 57 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f~ 117 (284)
T 3smz_A 57 KGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVR 117 (284)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEEEESCCTTCCHHHHHHHHG
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEEEcCCCCcCCHHHHHHHHH
Confidence 479999999999999999876654 34567788888888899999988877776666543
No 143
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=95.17 E-value=0.13 Score=46.72 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=19.4
Q ss_pred CeEEEEeCCHHHHHHHHHhccc
Q 010628 321 PAAFVSFNSRWGAAVCAQTQQT 342 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~~~~ 342 (505)
|.|||+|.+..+|+.|.+.+..
T Consensus 43 g~afV~f~~~~~A~~Ai~~lng 64 (205)
T 3tyt_A 43 GAAMVEMADGYAVDRAITHLNN 64 (205)
T ss_dssp TCEEEEESSHHHHHHHHHHHTT
T ss_pred CEEEEEECCHHHHHHHHHHhCC
Confidence 7899999999999999987654
No 144
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=95.16 E-value=0.1 Score=46.62 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=20.9
Q ss_pred CcceEEEEcCCC-CCCccHHHHHHHhhhhc
Q 010628 200 DQFTVLVRNVPP-DPDESVSELVEHFFLVN 228 (505)
Q Consensus 200 ~~~TVlV~~IP~-~~~~~~~~~l~~~f~~~ 228 (505)
+++||.|.|||. +.++ +.|+++|+..
T Consensus 2 ~~~~l~v~nlp~~~~~~---~~l~~~F~~~ 28 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTP---QSLFILFGVY 28 (198)
T ss_dssp CCCEEEEECCCSSSCCH---HHHHHHHHTT
T ss_pred CCcEEEEeCCCcccCCH---HHHHHHHHhc
Confidence 467999999999 7765 6788888765
No 145
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=95.12 E-value=0.11 Score=47.05 Aligned_cols=77 Identities=8% Similarity=0.051 Sum_probs=54.9
Q ss_pred CcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEecchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccc
Q 010628 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMKTG 279 (505)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~L~~l~~~r~~~~~~le~~~~k~~k~~~~rp~~k~~ 279 (505)
..++|.|.|||.+.++ +.|+++|+.. |.|.++.+..|-.
T Consensus 124 ~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~~~------------------------------------ 162 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSD---DDIKSVFEAF--GKIKSATLARDPT------------------------------------ 162 (216)
T ss_dssp TSCEEEEECCCTTCCH---HHHHHHHTTS--SCEEEEEEEECTT------------------------------------
T ss_pred CCcEEEEeCCCCcCCH---HHHHHHHhcc--CCeeEEEEEecCC------------------------------------
Confidence 4579999999998764 7788999875 5676666654200
Q ss_pred cccCCCCcccHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 280 FLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 280 ~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
... ..|.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 163 ---------------------------------~g~---~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 163 ---------------------------------TGK---HKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp ---------------------------------TCC---EEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred ---------------------------------CCC---cCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 000 3589999999999999999987654 3345566654
No 146
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=95.09 E-value=0.12 Score=44.68 Aligned_cols=34 Identities=24% Similarity=0.180 Sum_probs=26.2
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccCCC----CCceeeeC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTRNP----TLWLTEWA 353 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~~~----~~~~v~~A 353 (505)
.|.|||+|.+..+|..|.+.+....- ..+.|+.|
T Consensus 131 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 131 RGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred ceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 58999999999999999998776532 44555544
No 147
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=95.08 E-value=0.066 Score=49.66 Aligned_cols=80 Identities=11% Similarity=-0.027 Sum_probs=55.9
Q ss_pred CcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEecchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccc
Q 010628 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMKTG 279 (505)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~L~~l~~~r~~~~~~le~~~~k~~k~~~~rp~~k~~ 279 (505)
..+||.|.|||.+.++ +.|+++|+......|.++.+++|-.
T Consensus 67 ~~~~lfVgnL~~~~te---~~L~~~F~~~G~~~v~~v~i~~d~~------------------------------------ 107 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTD---EDLTEAVHSLGVNDILEIKFFENRA------------------------------------ 107 (229)
T ss_dssp --CEEEEESCCTTCCH---HHHHHHHHTTTCCCEEEEEEEECTT------------------------------------
T ss_pred CccEEEEeCCCCCCCH---HHHHHHHHHHCCcceEEEEEEecCC------------------------------------
Confidence 4579999999998875 6788999876322677777765410
Q ss_pred cccCCCCcccHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCC
Q 010628 280 FLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (505)
Q Consensus 280 ~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 354 (505)
... ..|.|||+|.+..+|..|++.+... ....+.|+.|-
T Consensus 108 ---------------------------------tg~---skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~ 148 (229)
T 3q2s_C 108 ---------------------------------NGQ---SKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVN 148 (229)
T ss_dssp ---------------------------------TCC---EEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECC
T ss_pred ---------------------------------CCc---cceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECC
Confidence 000 3589999999999999999876544 23456677663
No 148
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=94.92 E-value=0.078 Score=44.22 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=22.7
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhc
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~ 228 (505)
...++|.|.|||.+.++ +.|+++|+..
T Consensus 40 ~~~~~lfVgnLp~~~te---~dL~~~F~~~ 66 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTK---EEIVQFFSGL 66 (126)
T ss_dssp SSCCEEEEECCCTTCCH---HHHHHHTTTS
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHhcC
Confidence 35689999999998875 7889999875
No 149
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=94.67 E-value=0.18 Score=43.32 Aligned_cols=36 Identities=14% Similarity=0.284 Sum_probs=26.6
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeE
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (505)
...++|.|.|+|.+.++ +.|+++|+.. |.+.++.+.
T Consensus 86 ~~~~~l~v~nl~~~~t~---~~l~~~f~~~--G~i~~~~i~ 121 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQ---KELEQLFSQY--GRIITSRIL 121 (167)
T ss_dssp GTTCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEE
T ss_pred CCCCcEEECCCCCcCCH---HHHHHHHHhc--CCEeEEEEE
Confidence 34679999999998764 6788888876 456555554
No 150
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=94.60 E-value=0.049 Score=46.30 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=22.6
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhcC
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNH 229 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~ 229 (505)
...++|.|.|||.+.++ +.|+++|+...
T Consensus 44 ~~~~~lfV~nLp~~~te---~dL~~~F~~~G 71 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATE---NDIYNFFSPLN 71 (139)
T ss_dssp -CCCCEECCSCCTTCCH---HHHHHHHCSCC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcC
Confidence 35689999999998875 78899998753
No 151
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=94.59 E-value=0.17 Score=43.97 Aligned_cols=36 Identities=6% Similarity=0.097 Sum_probs=27.1
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeE
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (505)
...++|.|.|+|.+.++ +.|+++|+.. |.|.++.+.
T Consensus 93 ~~~~~l~v~nl~~~~t~---~~l~~~F~~~--G~i~~v~~~ 128 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTE---NDIRVMFSSF--GQIEECRIL 128 (175)
T ss_dssp GGGSEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEE
T ss_pred CCCCeEEEcCCCCcCCH---HHHHHHHHhC--CCEEEEEEE
Confidence 35689999999998765 6788888876 456665554
No 152
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=94.36 E-value=0.12 Score=44.93 Aligned_cols=37 Identities=11% Similarity=0.260 Sum_probs=27.3
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEe
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (505)
...++|.|.|+|.+.++ +.|+++|+.. |.|.++.+.+
T Consensus 92 ~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~ 128 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLND---DQVKELLTSF--GPLKAFNLVK 128 (172)
T ss_dssp TTTTCEEEECCCTTCCH---HHHHHHHHTT--SCEEEEEEEE
T ss_pred CCCCEEEEEcCCCcCCH---HHHHHHHHhc--CCceEEEEEe
Confidence 34689999999998764 6788888875 5566655543
No 153
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=94.26 E-value=0.26 Score=38.15 Aligned_cols=34 Identities=15% Similarity=0.070 Sum_probs=27.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
.|.|||.|.++.+|..|.+.+... ....++|+.|
T Consensus 43 kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 43 QGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 489999999999999999987654 3345667777
No 154
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=94.19 E-value=0.15 Score=44.05 Aligned_cols=34 Identities=15% Similarity=0.026 Sum_probs=25.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
..|.|||+|.+..+|..|.+ +... ....+.|+.|
T Consensus 128 ~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 128 SRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp TSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred cceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 36899999999999999998 3321 3456677766
No 155
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=93.89 E-value=0.11 Score=46.77 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=27.1
Q ss_pred cceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEe
Q 010628 201 QFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (505)
Q Consensus 201 ~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (505)
.+||.|.|||.+.++ +.|+++|+.. |.|.++.+.+
T Consensus 109 ~~~l~V~nLp~~~t~---~~L~~~F~~~--G~v~~v~i~~ 143 (193)
T 2voo_A 109 NRSVYIKGFPTDATL---DDIKEWLEDK--GQVLNIQMRR 143 (193)
T ss_dssp HTEEEEECCCTTCCH---HHHHHHHTTS--CCEEEEEEEE
T ss_pred cCEEEecCCCCcCCH---HHHHHHHhcC--CCEEEEEEEE
Confidence 479999999998764 7889999876 5576666654
No 156
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=93.78 E-value=0.33 Score=46.31 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=41.7
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCCCCCeecCCCCCChhHHHHHHHHHH
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPRDVYWQNLAIPYVSLSVRRLIMG 379 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP~DIiW~NL~~s~~~r~~R~~~~~ 379 (505)
.|.|||+|.+..+|..|.+ +... ....+.++.+ ...-|+=.||.....+..++.++..
T Consensus 81 ~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~-~~~~l~v~nlp~~~t~~~l~~~f~~ 140 (292)
T 2ghp_A 81 FRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHL-TECTLWMTNFPPSYTQRNIRDLLQD 140 (292)
T ss_dssp SEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEEC-CSCEEEEECCCTTCCHHHHHHHHHH
T ss_pred cEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEEC-CCCEEEEECCCCCCCHHHHHHHHHH
Confidence 4899999999999999996 3322 2344566666 3566888899877777777766543
No 157
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=93.70 E-value=0.24 Score=43.90 Aligned_cols=37 Identities=11% Similarity=0.211 Sum_probs=27.6
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEe
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (505)
...++|.|.|||.+.++ +.|+++|+.. |.|.++.+.+
T Consensus 102 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 138 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEE---HHLRDYFEQY--GKIEVIEIMT 138 (196)
T ss_dssp -CCSEEEEECCTTTCCH---HHHHHHHTTT--SCEEEEEEEE
T ss_pred CCcceEEEeCCCCCCCH---HHHHHHHhcC--CCeEEEEEee
Confidence 45689999999998765 7788999865 5666666654
No 158
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=93.68 E-value=0.21 Score=51.08 Aligned_cols=36 Identities=8% Similarity=0.094 Sum_probs=27.9
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APe 355 (505)
.|.|||+|.+..+|..|++.+... ....+.|+.|-.
T Consensus 144 kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~ 181 (437)
T 3pgw_S 144 RGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181 (437)
T ss_pred cceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence 589999999999999999887654 334566776643
No 159
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=93.42 E-value=0.35 Score=42.92 Aligned_cols=35 Identities=11% Similarity=-0.057 Sum_probs=27.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
..|.|||+|.+..+|..|.+.+... ....+.++.|
T Consensus 155 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 155 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp EEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 3589999999999999999976654 3345667765
No 160
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=93.40 E-value=0.59 Score=44.21 Aligned_cols=30 Identities=10% Similarity=0.142 Sum_probs=20.9
Q ss_pred CCcceEEEEcCCCCCCc-cHHHHHHHhhhhc
Q 010628 199 PDQFTVLVRNVPPDPDE-SVSELVEHFFLVN 228 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~-~~~~~l~~~f~~~ 228 (505)
...+||.|.|||.+.++ .+++.|.++|+..
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~ 37 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQF 37 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhcc
Confidence 45789999999998754 3333455777654
No 161
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=93.33 E-value=0.24 Score=44.96 Aligned_cols=34 Identities=15% Similarity=0.070 Sum_probs=26.2
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
.|.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 143 ~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a 178 (213)
T 4f02_A 143 KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 178 (213)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 479999999999999999887654 2345666665
No 162
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=92.98 E-value=0.33 Score=38.75 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=28.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 354 (505)
..|.|||+|.+..+|..|.+.+... ....+.++.+|
T Consensus 67 ~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 67 LVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp SEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred ccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 4689999999999999999987765 33455666666
No 163
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.77 E-value=0.47 Score=38.24 Aligned_cols=45 Identities=22% Similarity=0.039 Sum_probs=34.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCCCCCeecCC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPRDVYWQN 363 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP~DIiW~N 363 (505)
..|.|||+|.+..+|..|.+.+... ....+.++.|.+..|.-++.
T Consensus 63 ~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~ 109 (112)
T 2dit_A 63 PDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQSGP 109 (112)
T ss_dssp TTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCSSCCC
T ss_pred CCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCcccCC
Confidence 4689999999999999999887654 34567788886666655443
No 164
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=92.00 E-value=0.79 Score=43.37 Aligned_cols=103 Identities=15% Similarity=0.194 Sum_probs=66.9
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEecchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 010628 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMK 277 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~L~~l~~~r~~~~~~le~~~~k~~k~~~~rp~~k 277 (505)
.+.+.+|.|.|||.+.++ +.|+++|+.. |.|.++.+.+|-.
T Consensus 92 ~~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~i~~~~i~~~~~---------------------------------- 132 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQ---QQFEELVRPF--GSLERCFLVYSER---------------------------------- 132 (284)
T ss_dssp CCCSCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECTT----------------------------------
T ss_pred cCCCCEEEEcCCCCcCCH---HHHHHHHHhc--CCeeEEEEEeeCC----------------------------------
Confidence 356789999999998765 6788888875 4566666544310
Q ss_pred cccccCCCCcccHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCC-
Q 010628 278 TGFLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS- 354 (505)
Q Consensus 278 ~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP- 354 (505)
.. ...|.|||+|.+..+|..|.+.+... ....+.++.|.
T Consensus 133 -----------------------------------~g---~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~ 174 (284)
T 3smz_A 133 -----------------------------------TG---QSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA 174 (284)
T ss_dssp -----------------------------------TC---CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCG
T ss_pred -----------------------------------CC---ccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 00 13589999999999999999776553 22334454442
Q ss_pred --------CCCCeecCCCCCCh-hHHHHHHHH
Q 010628 355 --------EPRDVYWQNLAIPY-VSLSVRRLI 377 (505)
Q Consensus 355 --------eP~DIiW~NL~~s~-~~r~~R~~~ 377 (505)
...-|+=.||..+. .+.-++.++
T Consensus 175 ~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f 206 (284)
T 3smz_A 175 GQLTPALLHSRCLCVDRLPPGFNDVDALCRAL 206 (284)
T ss_dssp GGCCTTTTSCSEEEEECCCTTCCCHHHHHHHT
T ss_pred CCCCcccCCccEEEEecCCcccCCHHHHHHHh
Confidence 23346777877663 444455443
No 165
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=91.33 E-value=0.69 Score=43.71 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=24.7
Q ss_pred CeEEEEeCCHHHHHHHHHhcccCC---CCCceeeeC
Q 010628 321 PAAFVSFNSRWGAAVCAQTQQTRN---PTLWLTEWA 353 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~~~~~~---~~~~~v~~A 353 (505)
|.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 699999999999999999876642 334445443
No 166
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=91.27 E-value=0.8 Score=42.94 Aligned_cols=36 Identities=28% Similarity=0.281 Sum_probs=27.4
Q ss_pred CcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEe
Q 010628 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (505)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (505)
...+|.|.|+|.+.++ +.|+++|+.. |.|.++.+.+
T Consensus 95 ~~~~l~v~nl~~~~t~---~~l~~~F~~~--G~i~~v~i~~ 130 (261)
T 3sde_A 95 HGAALTVKNLSPVVSN---ELLEQAFSQF--GPVEKAVVVV 130 (261)
T ss_dssp CSSEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEE
T ss_pred cCCcccccCCCCCCCH---HHHHHHHHhc--CCeEEEEeee
Confidence 4579999999998764 6788888875 5666666654
No 167
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=91.11 E-value=0.64 Score=41.28 Aligned_cols=34 Identities=9% Similarity=0.040 Sum_probs=26.1
Q ss_pred CeEEEEeCCHHHHHHHHHhcccCC---CCCceeeeCC
Q 010628 321 PAAFVSFNSRWGAAVCAQTQQTRN---PTLWLTEWAS 354 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~~~~~~---~~~~~v~~AP 354 (505)
|.|||+|.+..+|..|.+.+.+.. ...+.++.|-
T Consensus 159 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 159 KMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp SCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred cEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 799999999999999999877643 3445566553
No 168
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.86 E-value=0.41 Score=37.95 Aligned_cols=36 Identities=17% Similarity=0.132 Sum_probs=28.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccCCCCCceeeeCC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTRNPTLWLTEWAS 354 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~~~~~~~v~~AP 354 (505)
..|.|||+|.+..+|..|.+.........+.|+.|-
T Consensus 53 ~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~ 88 (100)
T 2d9o_A 53 KPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLE 88 (100)
T ss_dssp SSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSS
T ss_pred CCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEcc
Confidence 368999999999999999987555445566777653
No 169
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=90.74 E-value=1.1 Score=40.89 Aligned_cols=34 Identities=9% Similarity=0.040 Sum_probs=26.5
Q ss_pred CeEEEEeCCHHHHHHHHHhcccCC---CCCceeeeCC
Q 010628 321 PAAFVSFNSRWGAAVCAQTQQTRN---PTLWLTEWAS 354 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~~~~~~---~~~~~v~~AP 354 (505)
|.|||+|.+..+|..|.+.+.... ...+.++.|-
T Consensus 190 g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 190 KMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred cEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 699999999999999999776542 3456666654
No 170
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=90.28 E-value=0.18 Score=38.69 Aligned_cols=37 Identities=14% Similarity=0.021 Sum_probs=29.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCCC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP 356 (505)
.|.|||+|.+..+|..|.+.+... ....+.++.||..
T Consensus 40 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 40 KRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp GTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 489999999999999999977654 4456778888763
No 171
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=90.13 E-value=0.48 Score=38.54 Aligned_cols=36 Identities=11% Similarity=0.094 Sum_probs=28.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 354 (505)
..|.|||+|.+..+|..|.+.+.+. ....+.++.+|
T Consensus 54 ~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 54 AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 3699999999999999999988765 34455666654
No 172
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.08 E-value=0.66 Score=36.08 Aligned_cols=37 Identities=14% Similarity=0.068 Sum_probs=29.1
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCCC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP 356 (505)
.|.|||+|.+..+|..|.+.+... ....+.|+.|-++
T Consensus 56 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 56 RRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 589999999999999999877654 3456778776443
No 173
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=88.71 E-value=1.1 Score=40.53 Aligned_cols=24 Identities=8% Similarity=0.051 Sum_probs=21.2
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR 343 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~ 343 (505)
.|.|||.|.+..+|..|.+.+.+.
T Consensus 165 ~g~gfV~f~~~~~A~~Ai~~lng~ 188 (205)
T 3tyt_A 165 SSSGLLEWDSKSDALETLGFLNHY 188 (205)
T ss_dssp SEEEEEECSSHHHHHHHHHHHTTC
T ss_pred ceEEEEEeCCHHHHHHHHHHhCCC
Confidence 489999999999999999987654
No 174
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=88.11 E-value=1.7 Score=41.12 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=37.7
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC-------------CCCCCeecCCCCCC-hhHHHHHHHH
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA-------------SEPRDVYWQNLAIP-YVSLSVRRLI 377 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A-------------PeP~DIiW~NL~~s-~~~r~~R~~~ 377 (505)
.|.|||+|.+..+|..|.+.+... ....+.++.| +...-|+=.||... ..+.-++.++
T Consensus 159 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F 232 (292)
T 2ghp_A 159 RRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESF 232 (292)
T ss_dssp CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHH
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHH
Confidence 589999999999999999876543 2233444433 12244667777766 5555555543
No 175
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=87.28 E-value=0.96 Score=35.32 Aligned_cols=35 Identities=11% Similarity=-0.103 Sum_probs=26.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 354 (505)
..|.|||+|.+..+|..|.+ +... ....+.|+.|-
T Consensus 57 ~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 57 NRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp TTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred cCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 36899999999999999998 6543 33556777653
No 176
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=86.99 E-value=0.55 Score=37.96 Aligned_cols=36 Identities=8% Similarity=-0.061 Sum_probs=27.8
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APe 355 (505)
.|.|||+|++..+|..|.+.+... +...+.|+.|..
T Consensus 67 rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 67 DGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp SCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 589999999999999999876553 345567776643
No 177
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.98 E-value=0.61 Score=38.48 Aligned_cols=40 Identities=25% Similarity=0.219 Sum_probs=30.6
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhcCC--CceeeeEeEec
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHP--NHYLTHQVVVN 241 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p--~~v~~v~i~~d 241 (505)
...++|.|.|||.+.++ +.|+++|+...+ +.+.++.+++|
T Consensus 21 ~~~~~v~V~nLp~~~te---~dl~~~F~~~g~v~g~v~~v~i~~d 62 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATA---EEVVAFFGQHCPITGGKEGILFVTY 62 (123)
T ss_dssp CSCCEEEECSCCTTCCH---HHHHHHHHTTSCCTTGGGGEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhhCCccCCcceEEEEEC
Confidence 44689999999998775 789999988754 34567777754
No 178
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.87 E-value=1.1 Score=35.99 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=27.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 354 (505)
..|.|||+|.+..+|..|.+.+... ....+.|+.|-
T Consensus 66 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 66 MRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp SCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 3689999999999999999877654 34556777653
No 179
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=86.48 E-value=0.55 Score=37.50 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=28.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 354 (505)
..|.|||+|++..+|..|.+.+... ....+.++.+|
T Consensus 58 ~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 58 GCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 4689999999999999999988765 33456666665
No 180
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.46 E-value=0.72 Score=36.90 Aligned_cols=38 Identities=16% Similarity=0.061 Sum_probs=29.8
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEe
Q 010628 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (505)
.+...+|.|.|||.+.++ +.|+++|+.. |.|.++.++.
T Consensus 13 ~~~~~~LfV~nLp~~vte---~dL~~lF~~f--G~V~~v~i~~ 50 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTE---GEVISLGLPF--GKVTNLLMLK 50 (105)
T ss_dssp CCCCCEEEECSCCTTSCH---HHHHHHHHHH--CCEEEEEEET
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEc
Confidence 345789999999998765 6788888876 6687877764
No 181
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=86.37 E-value=0.77 Score=35.98 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=30.1
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEec
Q 010628 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVN 241 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 241 (505)
....+||.|.|||.+.++ +.|+++|+.. |.|.++.+.+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 44 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDE---TEIRSFFARY--GSVKEVKIITD 44 (102)
T ss_dssp EEEEEEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEEEC
Confidence 345689999999998765 6788999876 56777777653
No 182
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.25 E-value=0.74 Score=36.00 Aligned_cols=35 Identities=20% Similarity=0.071 Sum_probs=26.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
..+.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 52 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 52 SKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp BCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred EeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 3589999999999999999976543 3345666665
No 183
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=85.88 E-value=0.58 Score=36.20 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=27.4
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 354 (505)
.|.|||+|.+..+|..|.+.+... ....+.++.|.
T Consensus 53 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 53 KGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 589999999999999999976543 34456777763
No 184
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.61 E-value=0.78 Score=35.26 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=27.1
Q ss_pred CCeEEEEeCCHHHHHHHHHhccc-C--CCCCceeeeCC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQT-R--NPTLWLTEWAS 354 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~-~--~~~~~~v~~AP 354 (505)
.+.|||+|.+..+|..|.+.+.. . ....+.++.|-
T Consensus 44 ~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 44 SGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp TTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 47999999999999999987765 3 34556677653
No 185
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.31 E-value=0.88 Score=35.34 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=26.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 354 (505)
.|.|||+|.+..+|..|.+.+... ....+.|+.|-
T Consensus 49 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 49 RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp TTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 589999999999999999876543 33456666653
No 186
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=83.56 E-value=0.86 Score=34.02 Aligned_cols=25 Identities=12% Similarity=0.049 Sum_probs=21.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR 343 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~ 343 (505)
..|.|||+|.+..+|..|.+.+...
T Consensus 46 ~~g~afV~f~~~~~A~~Ai~~lng~ 70 (81)
T 2krb_A 46 TKGYIFLEYASPAHAVDAVKNADGY 70 (81)
T ss_dssp CCCEEEEEESSHHHHHHHHTTSSSC
T ss_pred EeEEEEEEECCHHHHHHHHHHhcCc
Confidence 3589999999999999999876553
No 187
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=83.20 E-value=1.4 Score=35.82 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=29.5
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhcCC-CceeeeEeEec
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHP-NHYLTHQVVVN 241 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p-~~v~~v~i~~d 241 (505)
...+||.|.|||.+.++ +.|+++|+...+ +.|.++.+++|
T Consensus 15 ~~~~~l~V~nLp~~~te---~~l~~~F~~~G~~~~v~~v~i~~~ 55 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSI---EDVQNFLSDCTIHDGVAGVHFIYT 55 (118)
T ss_dssp CCCCEEEEESCCTTCCH---HHHHHHTTTSCBTTGGGGEEEEEC
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHHcCCccCceeEEEEEC
Confidence 35689999999998875 779999987643 12666777654
No 188
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=82.59 E-value=1.9 Score=35.18 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=27.7
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APe 355 (505)
.|.|||+|.+..+|..|.+.+... ....+.|+.|-.
T Consensus 73 kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 73 RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 589999999999999999876654 345567776643
No 189
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=80.99 E-value=0.96 Score=36.95 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=29.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APe 355 (505)
.|.|||+|.+..+|..|.+.+... ....+.++.+|+
T Consensus 71 ~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 71 IVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred eEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 589999999999999999998765 345566777664
No 190
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=80.09 E-value=2.2 Score=37.06 Aligned_cols=35 Identities=9% Similarity=0.068 Sum_probs=28.1
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccCCC----CCceeeeCC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTRNP----TLWLTEWAS 354 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~~~----~~~~v~~AP 354 (505)
.+.|||+|.+..+|..|.+.+....- ..++|+.|=
T Consensus 84 rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 84 QFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 36999999999999999998876543 567777763
No 191
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.64 E-value=1.5 Score=33.71 Aligned_cols=34 Identities=9% Similarity=-0.064 Sum_probs=24.8
Q ss_pred eEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCCC
Q 010628 322 AAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (505)
Q Consensus 322 ~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP 356 (505)
.|||+|.+..+|..|.+ +... ....+.|+.|.+.
T Consensus 47 ~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 47 FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 89999999999999999 5543 2344556665443
No 192
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=77.35 E-value=3 Score=30.88 Aligned_cols=37 Identities=14% Similarity=0.202 Sum_probs=27.0
Q ss_pred cceEEEEcCCCCCCcc---HHHHHHHhhhhcCCCceeeeEeE
Q 010628 201 QFTVLVRNVPPDPDES---VSELVEHFFLVNHPNHYLTHQVV 239 (505)
Q Consensus 201 ~~TVlV~~IP~~~~~~---~~~~l~~~f~~~~p~~v~~v~i~ 239 (505)
++||.|.|||.+.++. ..+.|+++|+.. |.|.++.+.
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~i~~v~i~ 40 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFYP 40 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhc--CCeEEEEec
Confidence 3699999999876432 357889999876 556666654
No 193
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.25 E-value=3.5 Score=32.19 Aligned_cols=37 Identities=22% Similarity=0.159 Sum_probs=27.0
Q ss_pred CCcceEEEEcCCCCCCc-cHHHHHHHhhhhcCCCceeee
Q 010628 199 PDQFTVLVRNVPPDPDE-SVSELVEHFFLVNHPNHYLTH 236 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~-~~~~~l~~~f~~~~p~~v~~v 236 (505)
|++.++.|.|||.+.++ .+++.|++.|++. .|.|.+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~y-GG~Vl~V 44 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNC-GGKVLSI 44 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTT-TCCEEEC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHc-CCeeEEE
Confidence 44444889999998754 5677888999886 3466665
No 194
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.20 E-value=1.8 Score=35.15 Aligned_cols=23 Identities=13% Similarity=0.201 Sum_probs=20.8
Q ss_pred CeEEEEeCCHHHHHHHHHhcccC
Q 010628 321 PAAFVSFNSRWGAAVCAQTQQTR 343 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~~~~~ 343 (505)
|.|||+|.+..+|..|.+.+...
T Consensus 64 gfaFV~f~~~~~A~~Ai~~lnG~ 86 (114)
T 2cq2_A 64 PYSFARYRTTEESKRAYVTLNGK 86 (114)
T ss_dssp SCEEEEESSHHHHHHHHHHTTTC
T ss_pred CEEEEEECCHHHHHHHHHHhCCC
Confidence 79999999999999999987765
No 195
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.97 E-value=2.1 Score=34.17 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=25.5
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC----CCCCceeeeCC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR----NPTLWLTEWAS 354 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~----~~~~~~v~~AP 354 (505)
.|.|||+|++..+|..|.+.+... ....+.|+.|.
T Consensus 52 kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 52 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 489999999999999999865431 23445566553
No 196
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=76.50 E-value=4 Score=33.56 Aligned_cols=37 Identities=22% Similarity=0.166 Sum_probs=29.1
Q ss_pred C-eEEEEeCCHHHHHHHHHhcccCCC----CCceeeeCCCCC
Q 010628 321 P-AAFVSFNSRWGAAVCAQTQQTRNP----TLWLTEWASEPR 357 (505)
Q Consensus 321 ~-~AFVtF~s~~~a~~a~q~~~~~~~----~~~~v~~APeP~ 357 (505)
| .|||+|.+..+|..|.+.+....- ..++|+.|-.++
T Consensus 62 Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 62 GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 6 599999999999999998877643 357788775444
No 197
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=76.14 E-value=3.5 Score=35.40 Aligned_cols=59 Identities=12% Similarity=0.021 Sum_probs=39.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCC--------CCCeecCCCCCChhHHHHHHHHH
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE--------PRDVYWQNLAIPYVSLSVRRLIM 378 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APe--------P~DIiW~NL~~s~~~r~~R~~~~ 378 (505)
..|.|||+|.+..+|..|.+ +... ....+.++.|.. ..-|+=.||..+..+.-++..+.
T Consensus 53 ~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~ 121 (175)
T 1fje_B 53 NRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFE 121 (175)
T ss_dssp TTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCT
T ss_pred cccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHH
Confidence 35899999999999999996 4332 233455555432 24577788887766666666543
No 198
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=75.38 E-value=1.9 Score=36.09 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=26.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
..|.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 91 ~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 127 (143)
T 3egn_A 91 MKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFA 127 (143)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEEC
T ss_pred cccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4689999999999999999976653 3344566655
No 199
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.49 E-value=4.1 Score=32.14 Aligned_cols=35 Identities=29% Similarity=0.418 Sum_probs=26.5
Q ss_pred CcceEEEEcCCCCCCccHHHHHHHhhhh---cCCCceeeeE
Q 010628 200 DQFTVLVRNVPPDPDESVSELVEHFFLV---NHPNHYLTHQ 237 (505)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~---~~p~~v~~v~ 237 (505)
...+|.|+|+|++.++ +.|+-||++ ...|.|.++.
T Consensus 7 ~~~~I~V~~lPp~~~~---e~L~LYFEn~rrsGGG~V~~v~ 44 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPD---ELLTLYFENRRRSGGGPVLSWQ 44 (104)
T ss_dssp CCCEEEEESCCTTSCH---HHHHHHHHCTTTTCCCCEEEEE
T ss_pred CccEEEEECCCCCCCh---hHheEEEeCCCcCCCceeeEEE
Confidence 3579999999998764 689999987 3455666554
No 200
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=73.98 E-value=5.5 Score=33.90 Aligned_cols=57 Identities=12% Similarity=0.043 Sum_probs=37.5
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCC------CCCCeecCCCCCChhHHHHHHHH
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS------EPRDVYWQNLAIPYVSLSVRRLI 377 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP------eP~DIiW~NL~~s~~~r~~R~~~ 377 (505)
.|.|||+|.+..+|..|. .+... ....+.++.+. .+.-|+=.||..+..+..++..+
T Consensus 51 ~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f 115 (172)
T 2g4b_A 51 KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELL 115 (172)
T ss_dssp TTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHH
Confidence 489999999999999998 44332 22334444332 23557777887766666666654
No 201
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=72.60 E-value=3.1 Score=31.39 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=25.4
Q ss_pred CcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEe
Q 010628 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQV 238 (505)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 238 (505)
+.+||.|.|||.+.++ +.|+++|++. .|.++.+
T Consensus 4 ~~~~l~V~nLp~~~t~---~~l~~~F~~~---~v~~~~i 36 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNC---QEVHDLLKDY---DLKYCYV 36 (88)
T ss_dssp CCCCEEEESCCSSCCH---HHHHHHTCSS---CCCCEEE
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHhhC---CeEEEEE
Confidence 4689999999998875 7789999876 3555554
No 202
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=72.37 E-value=4.1 Score=30.39 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=20.6
Q ss_pred CcceEEEEcCCCCCCccHHHHHHHhhhhc
Q 010628 200 DQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (505)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~ 228 (505)
..+||.|.|||.+.++ +.++++|++.
T Consensus 5 ~~~~l~V~nLp~~~t~---~~l~~~F~~~ 30 (87)
T 2hzc_A 5 SARRLYVGNIPFGITE---EAMMDFFNAQ 30 (87)
T ss_dssp GGGEEEEESCCTTCCH---HHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHH
Confidence 4689999999998764 6677777765
No 203
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=72.37 E-value=2.6 Score=31.53 Aligned_cols=22 Identities=18% Similarity=0.087 Sum_probs=19.1
Q ss_pred CCeEEEEeCCHHHHHHHHHhccc
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQT 342 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~ 342 (505)
.|.|||+|.+..+|..|. .+..
T Consensus 53 kg~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 53 KNFAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp SSEEEEEESSHHHHHHHG-GGTT
T ss_pred CcEEEEEcCCHHHHHHHH-hcCC
Confidence 589999999999999998 5544
No 204
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=71.77 E-value=1.6 Score=35.31 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=18.6
Q ss_pred CCCeEEEEeCCHHHHHHHHH
Q 010628 319 IMPAAFVSFNSRWGAAVCAQ 338 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q 338 (505)
..|.|||+|++..+|..|.+
T Consensus 60 ~~G~afV~F~~~~~a~~Al~ 79 (118)
T 2db1_A 60 QSGEAFVELESEDDVKLALK 79 (118)
T ss_dssp EEEEEEEEBSSHHHHHHHGG
T ss_pred CCeEEEEEECCHHHHHHHHh
Confidence 57899999999999999998
No 205
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.75 E-value=5.6 Score=30.30 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=25.6
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeee
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTH 236 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v 236 (505)
...++|.|.|||.+.++ +.|+++|+.. |.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~---~~l~~~F~~~--G~v~~v 38 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDS---AQLSEYFLAF--GPVASV 38 (94)
T ss_dssp TTCCEEEEECCCTTCCH---HHHHHHGGGT--SCEEEE
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHhc--CCeEEE
Confidence 34679999999998875 7889999876 455554
No 206
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=71.60 E-value=3.2 Score=35.62 Aligned_cols=35 Identities=14% Similarity=0.080 Sum_probs=27.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
..|.|||+|.+..+|..|.+.+... ....+.++.|
T Consensus 135 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 135 SKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred CceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 5789999999999999999976653 3345667766
No 207
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=69.39 E-value=5.3 Score=36.93 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=20.7
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR 343 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~ 343 (505)
.|.|||+|.+..+|..|.+.+.+.
T Consensus 179 kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 179 KNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp GTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEEeCCHHHHHHHHHHhCCC
Confidence 379999999999999999876654
No 208
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.82 E-value=5.9 Score=30.38 Aligned_cols=28 Identities=21% Similarity=0.157 Sum_probs=22.7
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhcC
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNH 229 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~ 229 (505)
...+||.|.|||.+.++ +.|+++|++..
T Consensus 17 ~~~~~l~V~nL~~~~t~---~~l~~~F~~~G 44 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARV---SDLKRALRELG 44 (97)
T ss_dssp CCCCEEEEECCCTTCCH---HHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCcCcH---HHHHHHHHhcC
Confidence 34689999999998865 67888888764
No 209
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=68.67 E-value=4.1 Score=33.76 Aligned_cols=35 Identities=9% Similarity=0.088 Sum_probs=27.6
Q ss_pred eEEEEeCCHHHHHHHHHhcccCCC----CCceeeeCCCC
Q 010628 322 AAFVSFNSRWGAAVCAQTQQTRNP----TLWLTEWASEP 356 (505)
Q Consensus 322 ~AFVtF~s~~~a~~a~q~~~~~~~----~~~~v~~APeP 356 (505)
.|||+|.+..+|..|.+.+....- ..++++.|-.+
T Consensus 68 qAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 68 QALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 599999999999999999877532 45677777543
No 210
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=71.08 E-value=1.1 Score=36.12 Aligned_cols=35 Identities=17% Similarity=0.085 Sum_probs=25.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
..|.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (116)
T 2lcw_A 56 LKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 92 (116)
Confidence 3589999999999999998866543 2334555554
No 211
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=67.64 E-value=6.3 Score=34.38 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=20.0
Q ss_pred CcceEEEEcCCCCCCccHHHHHHHhhhhc
Q 010628 200 DQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (505)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~ 228 (505)
.++||.|.|||.+.++ +.|+++|+..
T Consensus 3 ~~~~l~V~nLp~~~te---~~l~~~F~~~ 28 (198)
T 2yh0_A 3 MARRLYVGNIPFGITE---EAMMDFFNAQ 28 (198)
T ss_dssp -CCEEEEESCCTTCCH---HHHHHHHHHH
T ss_pred ceeEEEEcCCCCCCCH---HHHHHHHHHH
Confidence 4689999999998765 6677777654
No 212
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.11 E-value=3.5 Score=32.82 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=21.4
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhc
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~ 228 (505)
...+||.|.|||.+.++ +.|+++|+..
T Consensus 23 ~~~~~l~V~nLp~~~t~---~~l~~~f~~~ 49 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTE---RDLVSLFARF 49 (115)
T ss_dssp SCCSEEEEECCCTTCCH---HHHHHHTHHH
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHh
Confidence 35689999999998765 6777888765
No 213
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=64.96 E-value=5.5 Score=31.88 Aligned_cols=36 Identities=11% Similarity=0.146 Sum_probs=26.6
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEe
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQV 238 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 238 (505)
+..++|.|.|||.+.++ +.|+++|++..+ .|..+.+
T Consensus 26 ~~~~~l~VgnLp~~~te---~dL~~~F~~~G~-~v~~v~i 61 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSW---QDLKDLARENSL-ETTFSSV 61 (111)
T ss_dssp CCCEEEEEECSSCCCCH---HHHHHHHHHHTC-CCSEEEC
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHHhCC-eeEEEEE
Confidence 45689999999998765 678888887742 4555544
No 214
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=63.78 E-value=6.7 Score=31.76 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=31.8
Q ss_pred CcceEEEEcCC--CCCCccHHHHHHHhhhhcCCCceeeeEeEecc
Q 010628 200 DQFTVLVRNVP--PDPDESVSELVEHFFLVNHPNHYLTHQVVVNA 242 (505)
Q Consensus 200 ~~~TVlV~~IP--~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~ 242 (505)
.+++|.+.|+- .+.++.+.+.+++.|++. |.|.++.+..|-
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~--G~V~~v~I~~~~ 61 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKF--GAVNRVIIYQEK 61 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTT--SCEEEEEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhcc--CCEeEEEEeecC
Confidence 56899999994 444556788899999875 678888888764
No 215
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.78 E-value=5.3 Score=30.82 Aligned_cols=32 Identities=9% Similarity=-0.044 Sum_probs=23.3
Q ss_pred CeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010628 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
+.+||||++.++|..|.+ +... ....++|++|
T Consensus 50 d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lk 83 (91)
T 2dnr_A 50 DKMWVTFLEGSSALNVLS-LNGKELLNRTITIALK 83 (91)
T ss_dssp SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEEC
T ss_pred CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeC
Confidence 459999999999999988 5443 2345666664
No 216
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=66.20 E-value=1.6 Score=35.04 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=21.5
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhc
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~ 228 (505)
...++|.|.|||.+.++ +.|+++|+..
T Consensus 5 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~ 31 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTI---ESVADYFKQI 31 (116)
Confidence 45689999999998765 5678888775
No 217
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.95 E-value=2.8 Score=34.38 Aligned_cols=21 Identities=24% Similarity=0.088 Sum_probs=19.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHh
Q 010628 319 IMPAAFVSFNSRWGAAVCAQT 339 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~ 339 (505)
..|.|||+|.+..+|..|.+.
T Consensus 67 ~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 67 PTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp EEEEEEECCSSHHHHHHHHTT
T ss_pred EeeEEEEEECCHHHHHHHHHh
Confidence 578999999999999999985
No 218
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.66 E-value=6.9 Score=30.19 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=22.8
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhhc
Q 010628 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~ 228 (505)
....++|.|.|||.+.++ +.|+++|++.
T Consensus 12 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~ 39 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATE---ETLQEVFEKA 39 (101)
T ss_dssp SCCCSEEEEESCCTTCCH---HHHHHHCSSC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC
Confidence 345789999999998765 7788999875
No 219
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.74 E-value=7 Score=29.60 Aligned_cols=28 Identities=11% Similarity=0.199 Sum_probs=22.7
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhcC
Q 010628 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNH 229 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~ 229 (505)
...+||.|.|||.+.++ +.|+++|+...
T Consensus 6 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~G 33 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTA---DDLRQLFGDRK 33 (93)
T ss_dssp CCCCCEEEECCCTTCCH---HHHHHHHHHTT
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHHcC
Confidence 45689999999998865 67888888764
No 220
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=60.54 E-value=10 Score=31.52 Aligned_cols=37 Identities=8% Similarity=0.177 Sum_probs=29.2
Q ss_pred ceEEEEcC----CCCCCccHHHHHHHhhhhcCCCceeeeEeEecch
Q 010628 202 FTVLVRNV----PPDPDESVSELVEHFFLVNHPNHYLTHQVVVNAN 243 (505)
Q Consensus 202 ~TVlV~~I----P~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~ 243 (505)
..|+|.|+ |...++ +.|++||+.. |.|.++.++.|-.
T Consensus 3 ~kI~VgnL~~~~~~~tte---~~Lk~~Fs~f--GeV~~~~li~Dp~ 43 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQD---ISIKNYFKKY--GEISHFEAFNDPN 43 (136)
T ss_dssp CEEEEEESSSSCCCCCCH---HHHHHHHHTT--SCCSEEEEEECTT
T ss_pred cEEEEeCCCCCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecCC
Confidence 47999999 988765 7889999875 6788888777654
No 221
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=57.98 E-value=8.1 Score=34.80 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=30.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCC
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APe 355 (505)
..|.+||.|++..+|..|.+.+.+. ....+.++.+|+
T Consensus 174 ~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 174 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred ceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 4589999999999999999998875 455677777764
No 222
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=56.64 E-value=17 Score=30.50 Aligned_cols=61 Identities=8% Similarity=-0.091 Sum_probs=40.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC------------CC---------CCceeeeCCCCCCeecCCCCCChhHHHHHHHH
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTR------------NP---------TLWLTEWASEPRDVYWQNLAIPYVSLSVRRLI 377 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~------------~~---------~~~~v~~APeP~DIiW~NL~~s~~~r~~R~~~ 377 (505)
..|.|||.|.+..+|..|.+..... .. ........+...-|+-.||.....+.-++.++
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F 91 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVF 91 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHHH
T ss_pred ccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 5799999999999999998664321 00 00111123345678889999887777777765
Q ss_pred HH
Q 010628 378 MG 379 (505)
Q Consensus 378 ~~ 379 (505)
..
T Consensus 92 ~~ 93 (158)
T 2kn4_A 92 EK 93 (158)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 223
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=52.63 E-value=12 Score=28.41 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=22.6
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhhc
Q 010628 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~ 228 (505)
....+||.|.|||.+.++ +.|+++|+..
T Consensus 13 ~~~~~~l~V~nL~~~~t~---~~l~~~F~~~ 40 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITE---DELKEVFEDA 40 (96)
T ss_dssp TTGGGEEEEESCCSSCCH---HHHHHHHCSE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHhhC
Confidence 345789999999998765 6788888775
No 224
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=50.29 E-value=3.6 Score=31.97 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=18.2
Q ss_pred CCCeEEEEeCCHHHHHHHHH
Q 010628 319 IMPAAFVSFNSRWGAAVCAQ 338 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q 338 (505)
..|.|||+|.+..+|..|.+
T Consensus 49 ~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 49 SKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEEESSCCCHHHHTT
T ss_pred ccceEEEEECCHHHHHHHHh
Confidence 46899999999999999988
No 225
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=49.74 E-value=13 Score=28.47 Aligned_cols=26 Identities=12% Similarity=0.202 Sum_probs=20.4
Q ss_pred CcceEEEEcCCCCCCccHHHHHHHhhhhc
Q 010628 200 DQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (505)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~ 228 (505)
..++|.|.|||.+.++ +.|+++|+..
T Consensus 16 ~~~~l~V~nLp~~~t~---~~l~~~F~~~ 41 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSV---AELKVAISEL 41 (101)
T ss_dssp CSEEEEEECCCTTSCH---HHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHh
Confidence 5789999999998765 5677777654
No 226
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=48.38 E-value=12 Score=36.50 Aligned_cols=23 Identities=13% Similarity=0.201 Sum_probs=20.7
Q ss_pred CeEEEEeCCHHHHHHHHHhcccC
Q 010628 321 PAAFVSFNSRWGAAVCAQTQQTR 343 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~~~~~ 343 (505)
|.|||+|++.++|+.|.+.+...
T Consensus 57 gfaFV~f~~~~~A~~Ai~~lnG~ 79 (345)
T 3tht_A 57 PYSFARYRTTEESKRAYVTLNGK 79 (345)
T ss_dssp SEEEEEESSHHHHHHHHHHTTTC
T ss_pred CEEEEEECCHHHHHHHHHHhCCC
Confidence 79999999999999999987653
No 227
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.24 E-value=42 Score=26.39 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=31.0
Q ss_pred CeEEEEeCCHHHHHHHHHh-cccCCCCCceeeeCC--CCCCeecCCCC
Q 010628 321 PAAFVSFNSRWGAAVCAQT-QQTRNPTLWLTEWAS--EPRDVYWQNLA 365 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~-~~~~~~~~~~v~~AP--eP~DIiW~NL~ 365 (505)
+.|.|||.+...|+.+.+. -+.-+...+.|.+.| +|.-+.-.+|.
T Consensus 48 ~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~~~~~~r~ll~gl~ 95 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQADHELHGAQLSLRPAPPRAPARLLLQGLP 95 (104)
T ss_dssp TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECCCCCCCCCCCCSCC
T ss_pred CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCCCCCcceEeeecCC
Confidence 7999999999999888875 333344566666543 45556555554
No 228
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=45.04 E-value=71 Score=25.07 Aligned_cols=31 Identities=6% Similarity=0.051 Sum_probs=18.8
Q ss_pred cccCCCCccc------HHHHHHHHHHHHHHHHHHHHh
Q 010628 280 FLGLWGEKVD------GIDYHISEIEKLSKEIAEERE 310 (505)
Q Consensus 280 ~~~~~g~kvd------ai~~~~~~l~~l~~~I~~~~~ 310 (505)
.|+.||..++ .++.+..+++++..++...+.
T Consensus 49 ~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~ 85 (112)
T 1l8d_A 49 KCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLID 85 (112)
T ss_dssp ECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666776544 356666666666666655443
No 229
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=41.93 E-value=24 Score=29.01 Aligned_cols=29 Identities=14% Similarity=0.132 Sum_probs=23.2
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhhcC
Q 010628 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNH 229 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~ 229 (505)
.....||.|.|||.+.++ +.|+++|+...
T Consensus 42 ~~~~~~l~V~nLp~~~te---~~L~~~F~~~G 70 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQE---KDLKYIFGRYV 70 (143)
T ss_dssp CSCCSEEEEEEECTTCCH---HHHHHHHGGGC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHHhC
Confidence 345689999999998765 67888888764
No 230
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.64 E-value=17 Score=28.18 Aligned_cols=23 Identities=13% Similarity=0.097 Sum_probs=18.7
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTR 343 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~ 343 (505)
...+||||++.++|..|.+ +...
T Consensus 58 ~d~~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 58 QGQMLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp TTEEEEECSCSHHHHHHHH-GGGS
T ss_pred cCcEEEEEcChHHHHHHHh-cCCe
Confidence 3459999999999999998 5443
No 231
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=37.92 E-value=70 Score=20.14 Aligned_cols=20 Identities=45% Similarity=0.491 Sum_probs=16.0
Q ss_pred cccHHHHHHHHHHHHHHHHH
Q 010628 287 KVDGIDYHISEIEKLSKEIA 306 (505)
Q Consensus 287 kvdai~~~~~~l~~l~~~I~ 306 (505)
|.|-|.|+++++..+.++|+
T Consensus 29 kkdliaylekeianlrkkie 48 (49)
T 3he5_A 29 KKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 45778899999888888775
No 232
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=37.70 E-value=29 Score=31.92 Aligned_cols=40 Identities=10% Similarity=0.047 Sum_probs=30.1
Q ss_pred CCcceEEEEcCCCCCC------ccHHHHHHHhhhhcCCCceeeeEeEe
Q 010628 199 PDQFTVLVRNVPPDPD------ESVSELVEHFFLVNHPNHYLTHQVVV 240 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~------~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (505)
...+||.|.|||.+.+ +...+.|+++|++. |.|.++.++.
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f--G~I~~v~v~~ 177 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL--GDIDRIRYVE 177 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT--SCEEEEEEEG
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHcc--CCEEEEEEEC
Confidence 4578999999998752 11357889999886 6788887764
No 233
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.93 E-value=32 Score=27.53 Aligned_cols=36 Identities=3% Similarity=-0.144 Sum_probs=26.5
Q ss_pred CCcceEEEE--cCCCCCCccHHHHHHHhhhhcCCCceeeeEeE
Q 010628 199 PDQFTVLVR--NVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (505)
Q Consensus 199 ~~~~TVlV~--~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (505)
...+++.|. |+|.+.++ +.|+++|++. |.|.++.+.
T Consensus 23 ~pt~~L~V~Ng~L~~~~te---~~L~~~F~~f--G~v~~v~i~ 60 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSR---NQLLPVLEKC--GLVDALLMP 60 (114)
T ss_dssp SCCSEEEEETCTGGGTCCH---HHHHHHHHHH--SCEEEEECC
T ss_pred CCCCEEEEECCCCCCCCCH---HHHHHHHHhc--CCeEEEEEe
Confidence 346799994 59998765 6788888886 467776654
No 234
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=33.79 E-value=51 Score=27.05 Aligned_cols=35 Identities=11% Similarity=0.133 Sum_probs=26.9
Q ss_pred ceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEec
Q 010628 202 FTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVN 241 (505)
Q Consensus 202 ~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 241 (505)
-.|.|.|+|...++ +.|++.|++. |.|.++.+..+
T Consensus 29 L~I~V~NL~~~vte---~~L~~lFs~y--G~V~~V~i~~~ 63 (130)
T 3zzy_A 29 LRIIVENLFYPVTL---DVLHQIFSKF--GTVLKIITFTK 63 (130)
T ss_dssp EEEEEESCCSCCCH---HHHHHHHTTS--SCEEEEEEEEE
T ss_pred EEEEECCCCCCCCH---HHHHHHHhCc--CCEEEEEEEcC
Confidence 46679999987765 6788999876 67888877654
No 235
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=33.48 E-value=39 Score=28.98 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=26.4
Q ss_pred ceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEe
Q 010628 202 FTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (505)
Q Consensus 202 ~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (505)
.+|.|.|+|.+.++ +.|++.|+.. |.|.++.+..
T Consensus 47 l~l~VgNL~~~vte---d~L~~~Fs~f--G~V~~V~i~~ 80 (164)
T 1sjr_A 47 LRIIVENLFYPVTL---DVLHQIFSKF--GTVLKIITFT 80 (164)
T ss_dssp EEEEECSCCSCCCH---HHHHHHHHHH--SCEEEEEEEE
T ss_pred EEEEEeCcCCCCCH---HHHHHHHHhc--CCEEEEEEEe
Confidence 57889999988765 6788888886 6788877653
No 236
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=30.62 E-value=59 Score=26.32 Aligned_cols=36 Identities=3% Similarity=-0.139 Sum_probs=26.3
Q ss_pred Ccce--EEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEe
Q 010628 200 DQFT--VLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (505)
Q Consensus 200 ~~~T--VlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (505)
...+ |.|.|+|...++ +.|++.|+.. |.|.++.+..
T Consensus 22 ps~vl~l~V~NL~~~vt~---~~L~~~Fs~y--G~V~~v~i~~ 59 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITV---DVLYTVCNPV--GKVQRIVIFK 59 (124)
T ss_dssp CCSEEEEEEESCCSCCCH---HHHHHHHTTT--SCEEEEEEEE
T ss_pred CCcEEEEEEcCcCCCCCH---HHHHHHHHhc--CCEEEEEEEe
Confidence 3444 458999987765 6789999876 6788887753
No 237
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=29.70 E-value=46 Score=25.90 Aligned_cols=41 Identities=10% Similarity=-0.010 Sum_probs=29.0
Q ss_pred CcceEEEEcC--CCCCCc-----cHHHHHHHhhhhcCCCceeeeEeEecc
Q 010628 200 DQFTVLVRNV--PPDPDE-----SVSELVEHFFLVNHPNHYLTHQVVVNA 242 (505)
Q Consensus 200 ~~~TVlV~~I--P~~~~~-----~~~~~l~~~f~~~~p~~v~~v~i~~d~ 242 (505)
.+++|.+.|+ |.+..+ .+.+.|++.|++. |.|.++.+..|.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~--G~V~~v~i~~~~ 51 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY--GLVKSIEIPRPV 51 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT--SCEEEEECCCCB
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc--CCEEEEEEeccC
Confidence 4679999998 544432 3567788888875 678888887664
No 238
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.02 E-value=84 Score=24.39 Aligned_cols=38 Identities=11% Similarity=0.015 Sum_probs=25.9
Q ss_pred CCcceEEEEcCCCCC----C----ccHHHHHHHhhhhcCCCceeeeEe
Q 010628 199 PDQFTVLVRNVPPDP----D----ESVSELVEHFFLVNHPNHYLTHQV 238 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~----~----~~~~~~l~~~f~~~~p~~v~~v~i 238 (505)
...+||+|.|+.... + +.+.+.|+++|++. |.|.++.+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~--G~v~~v~i 58 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF--GQIRKLLL 58 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT--SCCSEEEE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc--CCEeEEEE
Confidence 457899999994321 1 12467888999876 56777744
No 239
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=27.14 E-value=92 Score=19.81 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 010628 4 LADIGVSAALNILGAFIFLIAFAILRL 30 (505)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~~F~~lR~ 30 (505)
++++.+-++=.+++-++.-++|..+|+
T Consensus 19 m~si~~~IVGaLvil~VAGLiysm~RK 45 (46)
T 1pfi_A 19 MKAIGGYIVGALVILAVAGLIYSMLRK 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666666777777789999996
No 240
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=25.13 E-value=75 Score=19.22 Aligned_cols=25 Identities=16% Similarity=0.470 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHhcc
Q 010628 473 FVNVFLGSIIAGTAFEQLNSFLKQS 497 (505)
Q Consensus 473 ~~n~flv~~i~~s~~~~l~~~~~~p 497 (505)
++...+.+.+.|-+...++.++|+-
T Consensus 4 i~~~IIaPivVGvvl~L~d~WLn~r 28 (33)
T 2kv5_A 4 LMSLVIAPIFVGLVLEMISRVLDEE 28 (33)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc
Confidence 5677888999999999999999865
No 241
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=24.13 E-value=74 Score=20.74 Aligned_cols=13 Identities=15% Similarity=0.076 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhCC
Q 010628 19 FIFLIAFAILRLQ 31 (505)
Q Consensus 19 ~~~~~~F~~lR~~ 31 (505)
++.++.|.++|+|
T Consensus 25 ii~~~~~~~~RRR 37 (44)
T 2l2t_A 25 IVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhh
Confidence 4446677888876
No 242
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.06 E-value=81 Score=24.77 Aligned_cols=30 Identities=10% Similarity=0.108 Sum_probs=23.1
Q ss_pred ceEEEEcCCCCC--CccHHHHHHHhhhhcCCC
Q 010628 202 FTVLVRNVPPDP--DESVSELVEHFFLVNHPN 231 (505)
Q Consensus 202 ~TVlV~~IP~~~--~~~~~~~l~~~f~~~~p~ 231 (505)
.|+.++|+|.+. .+++++.+++.|....|.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~ 37 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKD 37 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSS
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcC
Confidence 589999998854 445788899999876543
No 243
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=23.56 E-value=62 Score=25.15 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=18.4
Q ss_pred CeEEEEeCCHHHHHHHHHhcc
Q 010628 321 PAAFVSFNSRWGAAVCAQTQQ 341 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~~~ 341 (505)
.+|||+|++...|+.|..+..
T Consensus 50 TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 50 TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEEecCHHHHHHHHHhcc
Confidence 499999999999999888653
No 244
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=22.43 E-value=87 Score=20.39 Aligned_cols=13 Identities=15% Similarity=0.028 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhCC
Q 010628 19 FIFLIAFAILRLQ 31 (505)
Q Consensus 19 ~~~~~~F~~lR~~ 31 (505)
++.++.|.++|+|
T Consensus 26 ii~~~~~~~~RRr 38 (44)
T 2ks1_B 26 VVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhh
Confidence 4446677888876
No 245
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=22.11 E-value=71 Score=24.14 Aligned_cols=34 Identities=18% Similarity=0.101 Sum_probs=28.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccCCCCCceeee
Q 010628 319 IMPAAFVSFNSRWGAAVCAQTQQTRNPTLWLTEW 352 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~~~~~~~v~~ 352 (505)
--|.|.+.|++......|.|.+..++.+.+.++.
T Consensus 45 idgqamirfqnsdeqrlaiqkllnhnnnklqiei 78 (129)
T 4eyt_A 45 IDGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEI 78 (129)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHEETTTTEEEEEE
T ss_pred ecCeeEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 3589999999999999999999988877766554
No 246
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=21.80 E-value=1.1e+02 Score=16.81 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 010628 294 HISEIEKLSKEIAEERERV 312 (505)
Q Consensus 294 ~~~~l~~l~~~I~~~~~~~ 312 (505)
+-++++++++.+.+.|++.
T Consensus 6 lykeledlqerlrklrkkl 24 (27)
T 3twe_A 6 LYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4466778888887777653
No 247
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.48 E-value=1.6e+02 Score=22.59 Aligned_cols=45 Identities=13% Similarity=0.044 Sum_probs=31.0
Q ss_pred CCCCCcceEEEEcCCCC------CCccHHHHHHHhhhhcCCCceeeeEeEecc
Q 010628 196 KRRPDQFTVLVRNVPPD------PDESVSELVEHFFLVNHPNHYLTHQVVVNA 242 (505)
Q Consensus 196 ~~~~~~~TVlV~~IP~~------~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~ 242 (505)
...|.+=||+|.-.|.. .++.+...|.+.|.++ |.|..+.++.|-
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~--G~Vilvr~v~d~ 60 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSY--GTIVLVRINQGQ 60 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHH--SCCSEEEEETTE
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHC--CCEEEEEEecCc
Confidence 35678889999998753 3444556677778775 466677766554
No 248
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=25.79 E-value=21 Score=27.25 Aligned_cols=31 Identities=13% Similarity=0.059 Sum_probs=25.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccCCCCCcee
Q 010628 320 MPAAFVSFNSRWGAAVCAQTQQTRNPTLWLT 350 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~~~~~~~v 350 (505)
.|.|.+.|++......|.|.+..++...+.+
T Consensus 77 egqamirfqnsdeqrlaiqkllnhnnnklqi 107 (137)
T 2lsl_A 77 EGQAMIRFQNSDEQRLAIQKLLNHNNNKLQI 107 (137)
Confidence 5899999999999999999988776555433
No 249
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.06 E-value=1.5e+02 Score=22.52 Aligned_cols=44 Identities=16% Similarity=0.100 Sum_probs=30.9
Q ss_pred CCCCcceEEEEcCCC----C-CCccHHHHHHHhhhhcCCCceeeeEeEecc
Q 010628 197 RRPDQFTVLVRNVPP----D-PDESVSELVEHFFLVNHPNHYLTHQVVVNA 242 (505)
Q Consensus 197 ~~~~~~TVlV~~IP~----~-~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~ 242 (505)
..|.+=||+|+-.|. + .++.+...|.+.|.++ |.|..+.++.|-
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~--G~Vi~vr~~~d~ 51 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASF--GEVILIRFVEDK 51 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT--CCEEEEEECSSS
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhC--CCeEEEEEecCC
Confidence 357778999999874 1 2445667788888875 567777776654
Done!