BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010629
(505 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8S2G0|ISPE_ORYSJ 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic
OS=Oryza sativa subsp. japonica GN=ISPE PE=2 SV=1
Length = 401
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 369 DATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSILTSIDL 428
DA ++L P A V+P+LK R+ + GD +AV +S GS + I
Sbjct: 297 DACVNDLEPP-----AFEVLPSLKRLKKRI-----IAANRGDYDAVFMSGSGSTIVGIGS 346
Query: 429 PAPPTHALVCEDFSNDGLTDVILMTSN 455
P PP +D+ + +++ +T N
Sbjct: 347 PDPPAFVYDDDDYKDTFVSEACFLTRN 373
>sp|B7NLX4|CITX_ECO7I Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=citX
PE=3 SV=1
Length = 183
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 364 WQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSIL 423
WQ+ A + P GM + LK ++ + N + G + V++P G IL
Sbjct: 77 WQIQEQAALVSASGPEGMLSIAAPARDLKLATIELEHNHPL---GRLWDIDVLTPEGDIL 133
Query: 424 TSIDLPAPPTHALVCE 439
+ D PP L+CE
Sbjct: 134 SRRDYSLPPRRCLLCE 149
>sp|Q87QT9|TOLB_VIBPA Protein TolB OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD
2210633) GN=tolB PE=3 SV=1
Length = 450
Score = 33.5 bits (75), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 11/135 (8%)
Query: 142 KSTSYPFHKPEEHHPPGKDSTKKISNLIGKAATYAGSAKSKKPVNYIPTITNYTQLWWVP 201
K TSYP H P + + + G Y K++K + +N T+ +W P
Sbjct: 258 KITSYPRHNGAPRFSPDGNKLALVLSKTGTLQVYTFDLKTRKLTQITRSRSNNTEPFWHP 317
Query: 202 N---VVVAHQKEG---IEAVHLASGRTVCKLHLQ-EGGLHADINGDG---VLDHVQAVGG 251
+ ++ + G I V+L SG ++ +L Q L I DG V+ + G
Sbjct: 318 DGKSLIFTSDRGGKPQIYQVNLGSG-SIDRLTWQGSQNLGGQITPDGRFLVMVNRSDSGF 376
Query: 252 NGAEQTVVSGSMEVL 266
N A+Q + +G+++VL
Sbjct: 377 NLAKQDLETGALQVL 391
>sp|Q1REU8|CITX_ECOUT Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
OS=Escherichia coli (strain UTI89 / UPEC) GN=citX PE=3
SV=1
Length = 183
Score = 32.3 bits (72), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 364 WQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSIL 423
WQ+ A + P GM + LK ++ + + + G + V++P G IL
Sbjct: 77 WQIQEQAALVSASGPEGMLSIAAPARDLKLATIELEHSHPL---GRLWDIDVLTPEGDIL 133
Query: 424 TSIDLPAPPTHALVCE 439
+ D PP L+CE
Sbjct: 134 SRRDYSLPPRRCLLCE 149
>sp|A1A8P3|CITX_ECOK1 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
OS=Escherichia coli O1:K1 / APEC GN=citX PE=3 SV=1
Length = 183
Score = 32.3 bits (72), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 364 WQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSIL 423
WQ+ A + P GM + LK ++ + + + G + V++P G IL
Sbjct: 77 WQIQEQAALVSASGPEGMLSIAAPARDLKLATIELEHSHPL---GRLWDIDVLTPEGDIL 133
Query: 424 TSIDLPAPPTHALVCE 439
+ D PP L+CE
Sbjct: 134 SRRDYSLPPRRCLLCE 149
>sp|B7MF27|CITX_ECO45 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=citX
PE=3 SV=1
Length = 183
Score = 32.3 bits (72), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 364 WQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSIL 423
WQ+ A + P GM + LK ++ + + + G + V++P G IL
Sbjct: 77 WQIQEQAALVSASGPEGMLSIAAPARDLKLATIELEHSHPL---GRLWDIDVLTPEGDIL 133
Query: 424 TSIDLPAPPTHALVCE 439
+ D PP L+CE
Sbjct: 134 SRRDYSLPPRRCLLCE 149
>sp|B1IYJ2|CITX_ECOLC Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
OS=Escherichia coli (strain ATCC 8739 / DSM 1576 /
Crooks) GN=citX PE=3 SV=1
Length = 183
Score = 32.3 bits (72), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 364 WQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSIL 423
WQ+ A + P GM + LK ++ + + + G + V++P G IL
Sbjct: 77 WQIQEQAALVSASGPEGMLSIAAPARDLKLATIELEHSHPL---GRLWDIDVLTPEGEIL 133
Query: 424 TSIDLPAPPTHALVCE 439
+ D PP L+CE
Sbjct: 134 SRRDYSLPPRRCLLCE 149
>sp|A7ZXP1|CITX_ECOHS Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
OS=Escherichia coli O9:H4 (strain HS) GN=citX PE=3 SV=1
Length = 183
Score = 32.3 bits (72), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 364 WQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSIL 423
WQ+ A + P GM + LK ++ + + + G + V++P G IL
Sbjct: 77 WQIQEQAALVSASGPEGMLSIAAPARDLKLATIELEHSHPL---GRLWDIDVLTPEGEIL 133
Query: 424 TSIDLPAPPTHALVCE 439
+ D PP L+CE
Sbjct: 134 SRRDYSLPPRRCLLCE 149
>sp|Q0T702|CITX_SHIF8 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
OS=Shigella flexneri serotype 5b (strain 8401) GN=citX
PE=3 SV=1
Length = 183
Score = 32.3 bits (72), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 364 WQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSIL 423
WQ+ A + P GM + LK ++ + + + G + V++P G IL
Sbjct: 77 WQIQEQAALVSASGPEGMLSIAAPARDLKLATIELEHSHPL---GRLWDIDVLTPEGEIL 133
Query: 424 TSIDLPAPPTHALVCE 439
+ D PP L+CE
Sbjct: 134 SRRDYSLPPRRCLLCE 149
>sp|Q3Z4H9|CITX_SHISS Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
OS=Shigella sonnei (strain Ss046) GN=citX PE=3 SV=1
Length = 183
Score = 32.3 bits (72), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 364 WQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSIL 423
WQ+ A + P GM + LK ++ + + + G + V++P G IL
Sbjct: 77 WQIQEQAALVSASGPEGMLSIAAPARDLKLATIELEHSHPL---GRLWDIDVLTPEGEIL 133
Query: 424 TSIDLPAPPTHALVCE 439
+ D PP L+CE
Sbjct: 134 SRRDYSLPPRRCLLCE 149
>sp|B2TTH7|CITX_SHIB3 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
OS=Shigella boydii serotype 18 (strain CDC 3083-94 /
BS512) GN=citX PE=3 SV=1
Length = 183
Score = 32.3 bits (72), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 364 WQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSIL 423
WQ+ A + P GM + LK ++ + + + G + V++P G IL
Sbjct: 77 WQIQEQAALVSASGPEGMLSIAAPARDLKLATIELEHSHPL---GRLWDIDVLTPEGEIL 133
Query: 424 TSIDLPAPPTHALVCE 439
+ D PP L+CE
Sbjct: 134 SRRDYSLPPRRCLLCE 149
>sp|B6I0S3|CITX_ECOSE Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
OS=Escherichia coli (strain SE11) GN=citX PE=3 SV=1
Length = 183
Score = 32.3 bits (72), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 364 WQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSIL 423
WQ+ A + P GM + LK ++ + + + G + V++P G IL
Sbjct: 77 WQIQEQAALVSASGPEGMLSIAAPARDLKLATIELEHSHPL---GRLWDIDVLTPEGEIL 133
Query: 424 TSIDLPAPPTHALVCE 439
+ D PP L+CE
Sbjct: 134 SRRDYSLPPRRCLLCE 149
>sp|B7N9M0|CITX_ECOLU Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
GN=citX PE=3 SV=1
Length = 183
Score = 32.3 bits (72), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 364 WQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSIL 423
WQ+ A + P GM + LK ++ + + + G + V++P G IL
Sbjct: 77 WQIQEQAALVSASGPEGMLSIAAPARDLKLATIELEHSHPL---GRLWDIDVLTPEGEIL 133
Query: 424 TSIDLPAPPTHALVCE 439
+ D PP L+CE
Sbjct: 134 SRRDYSLPPRRCLLCE 149
>sp|P0A6G5|CITX_ECOLI Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
OS=Escherichia coli (strain K12) GN=citX PE=2 SV=1
Length = 183
Score = 32.3 bits (72), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 364 WQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSIL 423
WQ+ A + P GM + LK ++ + + + G + V++P G IL
Sbjct: 77 WQIQEQAALVSASGPEGMLSIAAPARDLKLATIELEHSHPL---GRLWDIDVLTPEGEIL 133
Query: 424 TSIDLPAPPTHALVCE 439
+ D PP L+CE
Sbjct: 134 SRRDYSLPPRRCLLCE 149
>sp|Q8FK03|CITX_ECOL6 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 /
UPEC) GN=citX PE=3 SV=1
Length = 183
Score = 32.3 bits (72), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 364 WQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSIL 423
WQ+ A + P GM + LK ++ + + + G + V++P G IL
Sbjct: 77 WQIQEQAALVSASGPEGMLSIAAPARDLKLATIELEHSHPL---GRLWDIDVLTPEGDIL 133
Query: 424 TSIDLPAPPTHALVCE 439
+ D PP L+CE
Sbjct: 134 SRRDYSLPPRRCLLCE 149
>sp|Q0TK58|CITX_ECOL5 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC)
GN=citX PE=3 SV=1
Length = 183
Score = 32.3 bits (72), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 364 WQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSIL 423
WQ+ A + P GM + LK ++ + + + G + V++P G IL
Sbjct: 77 WQIQEQAALVSASGPEGMLSIAAPARDLKLATIELEHSHPL---GRLWDIDVLTPEGDIL 133
Query: 424 TSIDLPAPPTHALVCE 439
+ D PP L+CE
Sbjct: 134 SRRDYSLPPRRCLLCE 149
>sp|C4ZWA3|CITX_ECOBW Probable apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
OS=Escherichia coli (strain K12 / MC4100 / BW2952)
GN=citX PE=3 SV=1
Length = 183
Score = 32.3 bits (72), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 364 WQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSIL 423
WQ+ A + P GM + LK ++ + + + G + V++P G IL
Sbjct: 77 WQIQEQAALVSASGPEGMLSIAAPARDLKLATIELEHSHPL---GRLWDIDVLTPEGEIL 133
Query: 424 TSIDLPAPPTHALVCE 439
+ D PP L+CE
Sbjct: 134 SRRDYSLPPRRCLLCE 149
>sp|B7MRQ2|CITX_ECO81 Probable apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
OS=Escherichia coli O81 (strain ED1a) GN=citX PE=3 SV=1
Length = 183
Score = 32.3 bits (72), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 364 WQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSIL 423
WQ+ A + P GM + LK ++ + + + G + V++P G IL
Sbjct: 77 WQIQEQAALVSASGPEGMLSIAAPARDLKLATIELEHSHPL---GRLWDIDVLTPEGDIL 133
Query: 424 TSIDLPAPPTHALVCE 439
+ D PP L+CE
Sbjct: 134 SRRDYSLPPRRCLLCE 149
>sp|B5YPW2|CITX_ECO5E Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
OS=Escherichia coli O157:H7 (strain EC4115 / EHEC)
GN=citX PE=3 SV=1
Length = 183
Score = 32.3 bits (72), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 364 WQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSIL 423
WQ+ A + P GM + LK ++ + + + G + V++P G IL
Sbjct: 77 WQIQEQAALVSASGPEGMLSIAAPARDLKLATIELEHSHPL---GRLWDIDVLTPEGEIL 133
Query: 424 TSIDLPAPPTHALVCE 439
+ D PP L+CE
Sbjct: 134 SRRDYSLPPRRCLLCE 149
>sp|P0A6G6|CITX_ECO57 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
OS=Escherichia coli O157:H7 GN=citX PE=3 SV=1
Length = 183
Score = 32.3 bits (72), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 364 WQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSIL 423
WQ+ A + P GM + LK ++ + + + G + V++P G IL
Sbjct: 77 WQIQEQAALVSASGPEGMLSIAAPARDLKLATIELEHSHPL---GRLWDIDVLTPEGEIL 133
Query: 424 TSIDLPAPPTHALVCE 439
+ D PP L+CE
Sbjct: 134 SRRDYSLPPRRCLLCE 149
>sp|B7L8J7|CITX_ECO55 Probable apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
OS=Escherichia coli (strain 55989 / EAEC) GN=citX PE=3
SV=1
Length = 183
Score = 32.3 bits (72), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 364 WQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSIL 423
WQ+ A + P GM + LK ++ + + + G + V++P G IL
Sbjct: 77 WQIQEQAALVSASGPEGMLSIAAPARDLKLATIELEHSHPL---GRLWDIDVLTPEGEIL 133
Query: 424 TSIDLPAPPTHALVCE 439
+ D PP L+CE
Sbjct: 134 SRRDYSLPPRRCLLCE 149
>sp|B7UKQ6|CITX_ECO27 Probable apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC)
GN=citX PE=3 SV=1
Length = 183
Score = 32.3 bits (72), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 364 WQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSIL 423
WQ+ A + P GM + LK ++ + + + G + V++P G IL
Sbjct: 77 WQIQEQAALVSASGPEGMLSIAAPARDLKLATIELEHSHPL---GRLWDIDVLTPEGDIL 133
Query: 424 TSIDLPAPPTHALVCE 439
+ D PP L+CE
Sbjct: 134 SRRDYSLPPRRCLLCE 149
>sp|B1LKK6|CITX_ECOSM Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=citX
PE=3 SV=1
Length = 183
Score = 32.3 bits (72), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 364 WQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISPGGSIL 423
WQ+ A + P GM + LK ++ + + + G + V++P G IL
Sbjct: 77 WQIQEQAALVSASGPEGMLSIAAPARDLKLATIELEHSHPL---GRLWDIDVLTPEGDIL 133
Query: 424 TSIDLPAPPTHALVCE 439
+ D PP L+CE
Sbjct: 134 SRRDYSLPPRRCLLCE 149
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 199,691,965
Number of Sequences: 539616
Number of extensions: 8752740
Number of successful extensions: 20800
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 20790
Number of HSP's gapped (non-prelim): 39
length of query: 505
length of database: 191,569,459
effective HSP length: 122
effective length of query: 383
effective length of database: 125,736,307
effective search space: 48157005581
effective search space used: 48157005581
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)