Query 010629
Match_columns 505
No_of_seqs 47 out of 49
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 02:45:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010629.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010629hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01839 FG-GAP: FG-GAP repeat 95.8 0.0093 2E-07 42.8 3.1 25 436-460 5-34 (34)
2 TIGR03300 assembly_YfgL outer 93.1 0.63 1.4E-05 47.8 9.9 92 339-461 68-161 (377)
3 PF14782 BBS2_C: Ciliary BBSom 92.8 0.12 2.5E-06 56.2 4.4 42 419-461 1-43 (431)
4 TIGR02658 TTQ_MADH_Hv methylam 92.4 17 0.00037 38.7 20.1 201 209-453 76-318 (352)
5 TIGR03075 PQQ_enz_alc_DH PQQ-d 92.4 14 0.00031 41.0 19.9 58 412-470 272-338 (527)
6 PF01011 PQQ: PQQ enzyme repea 92.2 0.12 2.6E-06 37.2 2.4 22 46-67 10-31 (38)
7 PF13517 VCBS: Repeat domain i 92.0 0.14 3.1E-06 39.5 2.8 25 440-464 1-25 (61)
8 PF13360 PQQ_2: PQQ-like domai 91.6 1.2 2.5E-05 41.9 9.1 88 344-460 1-91 (238)
9 TIGR03300 assembly_YfgL outer 91.6 3.1 6.8E-05 42.7 12.9 108 339-461 244-377 (377)
10 PRK11138 outer membrane biogen 90.6 1.7 3.6E-05 45.4 9.9 104 338-461 70-176 (394)
11 PRK11138 outer membrane biogen 90.6 2.9 6.3E-05 43.6 11.7 94 338-461 296-392 (394)
12 PF13517 VCBS: Repeat domain i 90.6 0.8 1.7E-05 35.3 5.7 50 401-451 7-61 (61)
13 cd00216 PQQ_DH Dehydrogenases 90.3 2 4.4E-05 46.6 10.6 87 338-440 63-156 (488)
14 PF13360 PQQ_2: PQQ-like domai 87.9 14 0.0003 34.7 13.1 102 337-460 77-188 (238)
15 smart00564 PQQ beta-propeller 82.9 0.92 2E-05 30.7 1.9 18 45-62 15-32 (33)
16 PF14727 PHTB1_N: PTHB1 N-term 77.9 16 0.00034 39.9 10.2 62 400-461 251-316 (418)
17 cd00216 PQQ_DH Dehydrogenases 77.5 21 0.00046 38.9 11.1 90 344-456 364-458 (488)
18 TIGR03075 PQQ_enz_alc_DH PQQ-d 77.4 23 0.0005 39.4 11.5 88 338-439 70-164 (527)
19 PF14779 BBS1: Ciliary BBSome 74.7 7.8 0.00017 39.8 6.4 56 401-458 195-253 (257)
20 PF14783 BBS2_Mid: Ciliary BBS 71.0 4.3 9.4E-05 36.8 3.2 27 434-460 3-30 (111)
21 PF12256 TcdB_toxin_midN: Inse 70.4 3.4 7.4E-05 39.1 2.6 30 425-455 11-45 (175)
22 TIGR03074 PQQ_membr_DH membran 68.2 66 0.0014 37.8 12.7 60 411-471 414-483 (764)
23 smart00191 Int_alpha Integrin 67.4 3.1 6.7E-05 32.5 1.4 27 438-464 12-46 (58)
24 PF08450 SGL: SMP-30/Gluconola 64.1 17 0.00036 35.1 6.0 47 405-454 197-245 (246)
25 PF00404 Dockerin_1: Dockerin 60.5 3.3 7.1E-05 27.2 0.3 11 236-246 1-11 (21)
26 KOG0301 Phospholipase A2-activ 52.7 1.4E+02 0.0029 35.0 11.3 115 337-473 183-300 (745)
27 PF09912 DUF2141: Uncharacteri 50.0 18 0.00038 32.3 3.3 32 215-246 36-72 (112)
28 COG3386 Gluconolactonase [Carb 49.4 97 0.0021 32.4 9.0 46 407-456 229-277 (307)
29 PF14783 BBS2_Mid: Ciliary BBS 45.9 1.3E+02 0.0027 27.5 8.1 26 431-457 82-107 (111)
30 PF13860 FlgD_ig: FlgD Ig-like 43.6 23 0.0005 29.4 2.8 50 412-464 28-77 (81)
31 PF04841 Vps16_N: Vps16, N-ter 42.8 80 0.0017 34.0 7.5 44 412-460 62-106 (410)
32 KOG2063 Vacuolar assembly/sort 41.1 59 0.0013 38.9 6.6 107 316-465 200-309 (877)
33 PF07483 W_rich_C: Tryptophan- 39.2 7.6 0.00016 35.1 -0.7 13 231-243 96-108 (109)
34 KOG3637 Vitronectin receptor, 36.6 72 0.0016 38.8 6.5 102 362-464 299-424 (1030)
35 PF14870 PSII_BNR: Photosynthe 35.7 1.8E+02 0.0038 30.6 8.4 102 337-456 20-124 (302)
36 KOG3637 Vitronectin receptor, 35.6 22 0.00048 43.0 2.1 31 435-465 326-366 (1030)
37 PF12256 TcdB_toxin_midN: Inse 33.7 24 0.00053 33.3 1.7 17 233-249 28-44 (175)
38 PF13540 RCC1_2: Regulator of 33.2 45 0.00097 22.9 2.5 19 406-424 4-22 (30)
39 COG4704 Uncharacterized protei 33.1 26 0.00056 33.3 1.7 28 218-245 72-105 (151)
40 PF10144 SMP_2: Bacterial viru 32.6 1.7E+02 0.0037 29.2 7.4 20 402-426 84-103 (210)
41 PRK12634 flgD flagellar basal 30.6 82 0.0018 31.6 4.8 52 409-463 122-173 (221)
42 KOG2695 WD40 repeat protein [G 29.5 92 0.002 33.9 5.2 45 390-434 346-392 (425)
43 KOG4649 PQQ (pyrrolo-quinoline 28.4 3.1E+02 0.0067 29.2 8.6 99 338-453 191-300 (354)
44 PF06433 Me-amine-dh_H: Methyl 28.1 2.6E+02 0.0057 30.1 8.3 169 265-460 135-317 (342)
45 COG1520 FOG: WD40-like repeat 27.9 5.4E+02 0.012 26.7 10.5 106 315-460 101-214 (370)
46 cd00200 WD40 WD40 domain, foun 27.5 4.5E+02 0.0097 23.5 10.6 57 402-462 147-206 (289)
47 cd00200 WD40 WD40 domain, foun 26.5 4.7E+02 0.01 23.4 11.1 56 402-462 105-164 (289)
48 PF13570 PQQ_3: PQQ-like domai 25.5 1.6E+02 0.0034 20.9 4.3 35 420-460 1-36 (40)
49 PF05567 Neisseria_PilC: Neiss 24.9 93 0.002 32.8 4.3 40 209-248 180-226 (335)
50 PF05567 Neisseria_PilC: Neiss 24.9 76 0.0016 33.4 3.6 54 412-465 182-241 (335)
51 PF13128 DUF3954: Protein of u 23.5 1.1E+02 0.0025 24.3 3.5 29 337-365 9-38 (50)
52 CHL00114 psbX photosystem II p 23.3 51 0.0011 25.0 1.4 24 467-490 6-33 (39)
53 TIGR03074 PQQ_membr_DH membran 22.9 4.5E+02 0.0098 31.2 9.7 96 345-454 640-745 (764)
54 smart00331 PP2C_SIG Sigma fact 22.8 2.9E+02 0.0062 25.5 6.7 56 404-462 102-164 (193)
55 KOG4550 Predicted membrane pro 22.5 95 0.0021 34.7 3.8 23 432-454 251-273 (606)
56 PRK09966 putative inner membra 22.4 31 0.00068 35.7 0.2 26 405-430 82-108 (407)
57 COG1520 FOG: WD40-like repeat 22.4 55 0.0012 33.9 2.1 20 47-66 122-141 (370)
58 PF06977 SdiA-regulated: SdiA- 22.1 3.4E+02 0.0073 27.6 7.5 68 391-460 173-247 (248)
59 PF11688 DUF3285: Protein of u 21.8 74 0.0016 24.7 2.0 20 470-489 26-45 (45)
60 PF13202 EF-hand_5: EF hand; P 21.7 41 0.00089 22.3 0.6 11 235-245 8-18 (25)
61 PRK12633 flgD flagellar basal 21.7 1.4E+02 0.003 30.1 4.7 50 411-463 131-180 (230)
No 1
>PF01839 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This region contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure []. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat []. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding []. A putative Ca2+ binding motif is found in some of the repeats. ; PDB: 1L5G_A 3IJE_A 1M1X_A 1JV2_A 1U8C_A 3V4P_C 3V4V_C 3VI3_A 3VI4_C 2VDN_A ....
Probab=95.82 E-value=0.0093 Score=42.84 Aligned_cols=25 Identities=32% Similarity=0.647 Sum_probs=18.4
Q ss_pred cEEeecCCCCcccEEE----ecCCe-EEEE
Q 010629 436 LVCEDFSNDGLTDVIL----MTSNG-VYGF 460 (505)
Q Consensus 436 ~Iv~DfngDG~nDiIV----vT~~G-iygf 460 (505)
+-+.||||||..||+| .+..| +|.|
T Consensus 5 ~~~gD~ngDG~~Dl~vg~~~~~~~G~v~v~ 34 (34)
T PF01839_consen 5 VAVGDFNGDGYDDLAVGYNNGGNAGAVYVY 34 (34)
T ss_dssp EEEESTSSSSS-EEEEETTTTCTCBEEEEE
T ss_pred cEEEEcCCCCCccEEEEcCCCCcCCEEEEC
Confidence 5578999999999999 45555 6554
No 2
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=93.06 E-value=0.63 Score=47.77 Aligned_cols=92 Identities=17% Similarity=0.219 Sum_probs=60.9
Q ss_pred EEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEEECC
Q 010629 339 VVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISP 418 (505)
Q Consensus 339 ~vFL~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~ils~ 418 (505)
+++...+|.|.|++.. +|...|+..++...... |.+ +...++++..+..+.-+|.
T Consensus 68 v~v~~~~g~v~a~d~~----tG~~~W~~~~~~~~~~~-------------p~v--------~~~~v~v~~~~g~l~ald~ 122 (377)
T TIGR03300 68 VYAADADGTVVALDAE----TGKRLWRVDLDERLSGG-------------VGA--------DGGLVFVGTEKGEVIALDA 122 (377)
T ss_pred EEEECCCCeEEEEEcc----CCcEeeeecCCCCcccc-------------eEE--------cCCEEEEEcCCCEEEEEEC
Confidence 4455567999999953 33899998776532111 111 1223344445567788887
Q ss_pred -CCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe-EEEEE
Q 010629 419 -GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG-VYGFV 461 (505)
Q Consensus 419 -~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~G-iygfv 461 (505)
+|+++-+..++.++.++|++.| + -++|.+.+| +|+|=
T Consensus 123 ~tG~~~W~~~~~~~~~~~p~v~~----~--~v~v~~~~g~l~a~d 161 (377)
T TIGR03300 123 EDGKELWRAKLSSEVLSPPLVAN----G--LVVVRTNDGRLTALD 161 (377)
T ss_pred CCCcEeeeeccCceeecCCEEEC----C--EEEEECCCCeEEEEE
Confidence 9999999999988888888742 2 266777777 88874
No 3
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=92.83 E-value=0.12 Score=56.21 Aligned_cols=42 Identities=26% Similarity=0.543 Sum_probs=39.0
Q ss_pred CCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe-EEEEE
Q 010629 419 GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG-VYGFV 461 (505)
Q Consensus 419 ~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~G-iygfv 461 (505)
+|.||-...|.+ |+|.++++|+-.||.++||++|.|| |-||.
T Consensus 1 tGeVlfKd~~~s-~VA~vv~~DYR~dG~~~lI~csvdGeVrGy~ 43 (431)
T PF14782_consen 1 TGEVLFKDTFSS-PVAGVVVADYRMDGKPQLICCSVDGEVRGYL 43 (431)
T ss_pred CceEEEEecccc-hhheeeeeccccCCCceEEEEEcCCEEEEec
Confidence 588888888888 8999999999999999999999999 99993
No 4
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=92.44 E-value=17 Score=38.73 Aligned_cols=201 Identities=14% Similarity=0.208 Sum_probs=117.4
Q ss_pred cCceeEEEccCCCeeEEEecCCC-------------------Cee-eeccCCCceeEEEeeecCCceeeeecCCcccccC
Q 010629 209 KEGIEAVHLASGRTVCKLHLQEG-------------------GLH-ADINGDGVLDHVQAVGGNGAEQTVVSGSMEVLRP 268 (505)
Q Consensus 209 ~~GIEViHL~SGrtlckL~L~~~-------------------~l~-aDINgDGVlD~V~a~gg~~~e~~~~~g~~~~~~~ 268 (505)
..-|+|+.++|++++-+|.+++. -+| ++++.|..|--|-+..+.-..+. ..++
T Consensus 76 ~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei-------~vp~ 148 (352)
T TIGR02658 76 TDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMM-------DVPD 148 (352)
T ss_pred CCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEE-------eCCC
Confidence 46799999999999998887432 244 46666666655544322222222 2377
Q ss_pred ceEEEEecCCCcccceeccccCCCCCCCccCCccccCcCCCCCCCcccccCceE--------eeCCCCCCCCccccccEE
Q 010629 269 CWAVATSGVPVREQLFNASICHHSPFNLFPHGEFSRNFGRTSDVASLEVATPIL--------IPRSDGHRHRKGSHGDVV 340 (505)
Q Consensus 269 C~avatSGvP~re~LFn~sIC~~~~f~~f~~~~~~r~~~~~~d~~~~ev~~Pli--------i~~~~g~~~r~~~~~D~v 340 (505)
|+.+-.++ |.-|- .+|....+..+... .+ +...+.+..+ +.++ .- ....+-.+
T Consensus 149 ~~~vy~t~----e~~~~-~~~~Dg~~~~v~~d---------~~-g~~~~~~~~vf~~~~~~v~~rP--~~--~~~dg~~~ 209 (352)
T TIGR02658 149 CYHIFPTA----NDTFF-MHCRDGSLAKVGYG---------TK-GNPKIKPTEVFHPEDEYLINHP--AY--SNKSGRLV 209 (352)
T ss_pred CcEEEEec----CCccE-EEeecCceEEEEec---------CC-CceEEeeeeeecCCccccccCC--ce--EcCCCcEE
Confidence 98887652 44555 77876554222110 01 1111111111 1121 00 01124578
Q ss_pred EEecCceEEEecCCCCCCcceeeeeecccc----ccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEE---------
Q 010629 341 FLTNRGEVTAYSPGLHGHDAIWQWQLLTDA----TWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILA--------- 407 (505)
Q Consensus 341 FL~s~G~vTs~~~~g~g~~~~~~Wq~~T~a----~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA--------- 407 (505)
|.++.|.|+-++..+.+-.....|.+.+.+ .|... | . +++.+.+.+..=||++
T Consensus 210 ~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~----g------~----q~ia~~~dg~~lyV~~~~~~~~thk 275 (352)
T TIGR02658 210 WPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPG----G------W----QQVAYHRARDRIYLLADQRAKWTHK 275 (352)
T ss_pred EEecCCeEEEEecCCCcceecceeeeccccccccccCCC----c------c----eeEEEcCCCCEEEEEecCCcccccc
Confidence 999999999999766444445667765543 45432 1 1 2255555666666665
Q ss_pred eecceEEEECC-CCCEEEEEeCCCCCCcccEEeecCCCCcccEEEec
Q 010629 408 GGDQEAVVISP-GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMT 453 (505)
Q Consensus 408 ~Ge~~~~ils~-~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT 453 (505)
.|..++.++|. ++++++.+++...| .-.-|+.||..=+.+..
T Consensus 276 ~~~~~V~ViD~~t~kvi~~i~vG~~~----~~iavS~Dgkp~lyvtn 318 (352)
T TIGR02658 276 TASRFLFVVDAKTGKRLRKIELGHEI----DSINVSQDAKPLLYALS 318 (352)
T ss_pred CCCCEEEEEECCCCeEEEEEeCCCce----eeEEECCCCCeEEEEeC
Confidence 45579999997 99999999997643 33447888775555555
No 5
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=92.41 E-value=14 Score=40.97 Aligned_cols=58 Identities=22% Similarity=0.344 Sum_probs=43.0
Q ss_pred eEEEECC-CCCEEEEEeCCC------CCCcccEEeecCCCCc-ccE-EEecCCeEEEEEEeccCChhh
Q 010629 412 EAVVISP-GGSILTSIDLPA------PPTHALVCEDFSNDGL-TDV-ILMTSNGVYGFVQTRQPGALF 470 (505)
Q Consensus 412 ~~~ils~-~G~vl~s~~Lp~------pP~ap~Iv~DfngDG~-nDi-IVvT~~Giygfv~~~~~g~~~ 470 (505)
+++-||. +|++.=.++.-. =..++|++.|++.||. -++ ++.|++| +-|++-|.+|-.+
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G-~~~vlDr~tG~~i 338 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNG-FFYVLDRTNGKLL 338 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCc-eEEEEECCCCcee
Confidence 6777787 899988877733 3567788889877775 354 4778888 5689999999654
No 6
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=92.17 E-value=0.12 Score=37.17 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.4
Q ss_pred EEEeeecCCccceeceecCCCc
Q 010629 46 FAFYAFAGRSGLLRWSRKNENI 67 (505)
Q Consensus 46 fsyyAf~g~tG~~RW~h~~~d~ 67 (505)
-..||||.+||++.|+++.+..
T Consensus 10 g~l~AlD~~TG~~~W~~~~~~~ 31 (38)
T PF01011_consen 10 GYLYALDAKTGKVLWKFQTGPP 31 (38)
T ss_dssp SEEEEEETTTTSEEEEEESSSG
T ss_pred CEEEEEECCCCCEEEeeeCCCC
Confidence 3689999999999999998753
No 7
>PF13517 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; PDB: 2C25_A 2BWR_B 2C4D_A 2BWM_A.
Probab=92.01 E-value=0.14 Score=39.53 Aligned_cols=25 Identities=28% Similarity=0.674 Sum_probs=18.6
Q ss_pred ecCCCCcccEEEecCCeEEEEEEec
Q 010629 440 DFSNDGLTDVILMTSNGVYGFVQTR 464 (505)
Q Consensus 440 DfngDG~nDiIVvT~~Giygfv~~~ 464 (505)
||||||..||++.....++-|.+..
T Consensus 1 D~ngDG~~Div~~~~~~~~~~~~~~ 25 (61)
T PF13517_consen 1 DFNGDGRPDIVVANDGSVYVYLNDG 25 (61)
T ss_dssp -SSSSSS-EEEEE-SSSEEEEEB-S
T ss_pred CCCCCCCccEEEEeCCCeEEEEECC
Confidence 8999999999999977788887765
No 8
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=91.63 E-value=1.2 Score=41.87 Aligned_cols=88 Identities=24% Similarity=0.387 Sum_probs=57.1
Q ss_pred cCceEEEecC-CCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEEECC-CCC
Q 010629 344 NRGEVTAYSP-GLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISP-GGS 421 (505)
Q Consensus 344 s~G~vTs~~~-~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~ils~-~G~ 421 (505)
++|.|+|+++ .| ...|+...+..+. . ....|. ....-++++.++..+..+|. +|+
T Consensus 1 ~~g~l~~~d~~tG-----~~~W~~~~~~~~~---------~-~~~~~~--------~~~~~v~~~~~~~~l~~~d~~tG~ 57 (238)
T PF13360_consen 1 DDGTLSALDPRTG-----KELWSYDLGPGIG---------G-PVATAV--------PDGGRVYVASGDGNLYALDAKTGK 57 (238)
T ss_dssp -TSEEEEEETTTT-----EEEEEEECSSSCS---------S-EEETEE--------EETTEEEEEETTSEEEEEETTTSE
T ss_pred CCCEEEEEECCCC-----CEEEEEECCCCCC---------C-ccceEE--------EeCCEEEEEcCCCEEEEEECCCCC
Confidence 4799999998 45 9999985533210 0 110011 12233455558899999997 999
Q ss_pred EEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe-EEEE
Q 010629 422 ILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG-VYGF 460 (505)
Q Consensus 422 vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~G-iygf 460 (505)
++-+.+++.+...+|++.+ +.|+|.+.+| +|+|
T Consensus 58 ~~W~~~~~~~~~~~~~~~~------~~v~v~~~~~~l~~~ 91 (238)
T PF13360_consen 58 VLWRFDLPGPISGAPVVDG------GRVYVGTSDGSLYAL 91 (238)
T ss_dssp EEEEEECSSCGGSGEEEET------TEEEEEETTSEEEEE
T ss_pred EEEEeeccccccceeeecc------cccccccceeeeEec
Confidence 9999999888777764432 3456676665 6665
No 9
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=91.59 E-value=3.1 Score=42.67 Aligned_cols=108 Identities=16% Similarity=0.211 Sum_probs=63.2
Q ss_pred EEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeee----eeeEEeecccCC-------------c
Q 010629 339 VVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVV----PTLKAFSLRVHD-------------N 401 (505)
Q Consensus 339 ~vFL~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~----PsL~af~lr~~~-------------~ 401 (505)
+++.+.+|.+.|++.. .+...|+......... ...+. ..++ ..|.++...... .
T Consensus 244 vy~~~~~g~l~a~d~~----tG~~~W~~~~~~~~~p--~~~~~---~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~s 314 (377)
T TIGR03300 244 VYAVSYQGRVAALDLR----SGRVLWKRDASSYQGP--AVDDN---RLYVTDADGVVVALDRRSGSELWKNDELKYRQLT 314 (377)
T ss_pred EEEEEcCCEEEEEECC----CCcEEEeeccCCccCc--eEeCC---EEEEECCCCeEEEEECCCCcEEEccccccCCccc
Confidence 4445568999999974 3478998875432111 11110 1111 234343332110 0
Q ss_pred -----cceEEEee-cceEEEECC-CCCEEEEEeCCCC-CCcccEEeecCCCCcccEEEecCCe-EEEEE
Q 010629 402 -----QQMILAGG-DQEAVVISP-GGSILTSIDLPAP-PTHALVCEDFSNDGLTDVILMTSNG-VYGFV 461 (505)
Q Consensus 402 -----~~~IlA~G-e~~~~ils~-~G~vl~s~~Lp~p-P~ap~Iv~DfngDG~nDiIVvT~~G-iygfv 461 (505)
...|++.. +-.+.++|. +|+++.+.+++.. -.+.|++.| +-|+|.|.+| +|+|.
T Consensus 315 sp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~------~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 315 APAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVG------DGLLVQTRDGDLYAFR 377 (377)
T ss_pred cCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEEC------CEEEEEeCCceEEEeC
Confidence 12233322 245677787 8999999999884 356666665 3499999999 98873
No 10
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=90.59 E-value=1.7 Score=45.39 Aligned_cols=104 Identities=14% Similarity=0.208 Sum_probs=61.5
Q ss_pred cEEEE-ecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEEE
Q 010629 338 DVVFL-TNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVI 416 (505)
Q Consensus 338 D~vFL-~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~il 416 (505)
|.||+ ..+|.|.|++.. +|+.+|+.++...-... +. ..+..+-.++.. ....+++...+..+.-+
T Consensus 70 ~~vy~~~~~g~l~ald~~----tG~~~W~~~~~~~~~~~---~~-~~~~~~~~~~~v------~~~~v~v~~~~g~l~al 135 (394)
T PRK11138 70 NKVYAADRAGLVKALDAD----TGKEIWSVDLSEKDGWF---SK-NKSALLSGGVTV------AGGKVYIGSEKGQVYAL 135 (394)
T ss_pred CEEEEECCCCeEEEEECC----CCcEeeEEcCCCccccc---cc-ccccccccccEE------ECCEEEEEcCCCEEEEE
Confidence 44555 567999999964 33899998776511000 00 000000011111 11233333344567778
Q ss_pred CC-CCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe-EEEEE
Q 010629 417 SP-GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG-VYGFV 461 (505)
Q Consensus 417 s~-~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~G-iygfv 461 (505)
|. +|+++=+.+++.++.+.|++.| | -|+|.|.+| +|+|-
T Consensus 136 d~~tG~~~W~~~~~~~~~ssP~v~~----~--~v~v~~~~g~l~ald 176 (394)
T PRK11138 136 NAEDGEVAWQTKVAGEALSRPVVSD----G--LVLVHTSNGMLQALN 176 (394)
T ss_pred ECCCCCCcccccCCCceecCCEEEC----C--EEEEECCCCEEEEEE
Confidence 96 9999999999998888887763 2 266777777 78873
No 11
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=90.58 E-value=2.9 Score=43.58 Aligned_cols=94 Identities=13% Similarity=0.213 Sum_probs=54.5
Q ss_pred cEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEEEC
Q 010629 338 DVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVIS 417 (505)
Q Consensus 338 D~vFL~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~ils 417 (505)
.+++.+.+|.|.|++.. ++..+|+......+.. .-|.+. + .-++++..+-.+.++|
T Consensus 296 ~vy~~~~~g~l~ald~~----tG~~~W~~~~~~~~~~------------~sp~v~------~--g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 296 RIYLVDQNDRVYALDTR----GGVELWSQSDLLHRLL------------TAPVLY------N--GYLVVGDSEGYLHWIN 351 (394)
T ss_pred EEEEEcCCCeEEEEECC----CCcEEEcccccCCCcc------------cCCEEE------C--CEEEEEeCCCEEEEEE
Confidence 45556668888888864 2366776432111100 011111 1 1223333344577789
Q ss_pred C-CCCEEEEEeCCC-CCCcccEEeecCCCCcccEEEecCCe-EEEEE
Q 010629 418 P-GGSILTSIDLPA-PPTHALVCEDFSNDGLTDVILMTSNG-VYGFV 461 (505)
Q Consensus 418 ~-~G~vl~s~~Lp~-pP~ap~Iv~DfngDG~nDiIVvT~~G-iygfv 461 (505)
+ +|+++.+.+++. .-.+.|++. || .|+|.|.+| +|.|-
T Consensus 352 ~~tG~~~~~~~~~~~~~~s~P~~~----~~--~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 352 REDGRFVAQQKVDSSGFLSEPVVA----DD--KLLIQARDGTVYAIT 392 (394)
T ss_pred CCCCCEEEEEEcCCCcceeCCEEE----CC--EEEEEeCCceEEEEe
Confidence 7 999999999864 334445543 22 599999998 88864
No 12
>PF13517 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; PDB: 2C25_A 2BWR_B 2C4D_A 2BWM_A.
Probab=90.58 E-value=0.8 Score=35.33 Aligned_cols=50 Identities=18% Similarity=0.388 Sum_probs=25.8
Q ss_pred ccceEEEeecceEEEE-C-CCCCE--EEEEeCCC-CCCcccEEeecCCCCcccEEE
Q 010629 401 NQQMILAGGDQEAVVI-S-PGGSI--LTSIDLPA-PPTHALVCEDFSNDGLTDVIL 451 (505)
Q Consensus 401 ~~~~IlA~Ge~~~~il-s-~~G~v--l~s~~Lp~-pP~ap~Iv~DfngDG~nDiIV 451 (505)
..+++++ ++.+..|. . .+|+. .....++. .....+.+.|||+||..||+|
T Consensus 7 ~~Div~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~D~d~DG~~Di~V 61 (61)
T PF13517_consen 7 RPDIVVA-NDGSVYVYLNDGDGTFQFPAQIPFSSSGSGWSVAFADIDGDGKPDILV 61 (61)
T ss_dssp S-EEEEE--SSSEEEEEB-SSS-BEEEEEEBTTCSGGTTTTCEE-SSSSSS-EEE-
T ss_pred CccEEEE-eCCCeEEEEECCCCCeEEeeeEeeCCCCCcceeEEEEccCCCcccEEC
Confidence 3454444 45444444 2 35554 33444433 223468899999999999997
No 13
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=90.29 E-value=2 Score=46.63 Aligned_cols=87 Identities=13% Similarity=0.082 Sum_probs=54.9
Q ss_pred cEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEEEC
Q 010629 338 DVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVIS 417 (505)
Q Consensus 338 D~vFL~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~ils 417 (505)
.++|.+.+|.|.|++.. .+..+|+..+....... .|.+..-+....+...++++..+..+.-+|
T Consensus 63 ~vy~~~~~g~l~AlD~~----tG~~~W~~~~~~~~~~~------------~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD 126 (488)
T cd00216 63 DMYFTTSHSALFALDAA----TGKVLWRYDPKLPADRG------------CCDVVNRGVAYWDPRKVFFGTFDGRLVALD 126 (488)
T ss_pred EEEEeCCCCcEEEEECC----CChhhceeCCCCCcccc------------ccccccCCcEEccCCeEEEecCCCeEEEEE
Confidence 35566668999999963 34899998876541110 010101011011124556666677788889
Q ss_pred C-CCCEEEEEeCCCC------CCcccEEee
Q 010629 418 P-GGSILTSIDLPAP------PTHALVCED 440 (505)
Q Consensus 418 ~-~G~vl~s~~Lp~p------P~ap~Iv~D 440 (505)
. +|+++-.++++.+ ..++|++.|
T Consensus 127 ~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~ 156 (488)
T cd00216 127 AETGKQVWKFGNNDQVPPGYTMTGAPTIVK 156 (488)
T ss_pred CCCCCEeeeecCCCCcCcceEecCCCEEEC
Confidence 7 9999999999876 567777765
No 14
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=87.86 E-value=14 Score=34.67 Aligned_cols=102 Identities=21% Similarity=0.383 Sum_probs=57.4
Q ss_pred ccEEEEecCceEEEecCCCCCCcceeeeee-ccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEE
Q 010629 337 GDVVFLTNRGEVTAYSPGLHGHDAIWQWQL-LTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVV 415 (505)
Q Consensus 337 ~D~vFL~s~G~vTs~~~~g~g~~~~~~Wq~-~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~i 415 (505)
..+++.+.+|.|.+++.. +|..+|+. .+....... . ....|.+. ...++++.....++.
T Consensus 77 ~~v~v~~~~~~l~~~d~~----tG~~~W~~~~~~~~~~~~-------~-~~~~~~~~--------~~~~~~~~~~g~l~~ 136 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAK----TGKVLWSIYLTSSPPAGV-------R-SSSSPAVD--------GDRLYVGTSSGKLVA 136 (238)
T ss_dssp TEEEEEETTSEEEEEETT----TSCEEEEEEE-SSCTCST-------B---SEEEEE--------TTEEEEEETCSEEEE
T ss_pred cccccccceeeeEecccC----Ccceeeeecccccccccc-------c-cccCceEe--------cCEEEEEeccCcEEE
Confidence 456777788999999932 34999994 444211110 0 11111111 333444444788999
Q ss_pred ECC-CCCEEEEEeCCCCCCcccE--EeecC-----CCCcccEEEecCCe-EEEE
Q 010629 416 ISP-GGSILTSIDLPAPPTHALV--CEDFS-----NDGLTDVILMTSNG-VYGF 460 (505)
Q Consensus 416 ls~-~G~vl~s~~Lp~pP~ap~I--v~Dfn-----gDG~nDiIVvT~~G-iygf 460 (505)
+|+ +|+++-..+++.++..-.+ +.|.+ .+| .|.+.+.+| ++.+
T Consensus 137 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~~~~ 188 (238)
T PF13360_consen 137 LDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG--RVYVSSGDGRVVAV 188 (238)
T ss_dssp EETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT--EEEEECCTSSEEEE
T ss_pred EecCCCcEEEEeecCCCCCCcceeeecccccceEEECC--EEEEEcCCCeEEEE
Confidence 996 9999999999776632221 11111 133 677777677 4544
No 15
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=82.87 E-value=0.92 Score=30.73 Aligned_cols=18 Identities=22% Similarity=0.606 Sum_probs=15.9
Q ss_pred eEEEeeecCCccceecee
Q 010629 45 HFAFYAFAGRSGLLRWSR 62 (505)
Q Consensus 45 hfsyyAf~g~tG~~RW~h 62 (505)
.-..||+|.+||+++|+.
T Consensus 15 ~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 15 DGTLYALDAKTGEILWTY 32 (33)
T ss_pred CCEEEEEEcccCcEEEEc
Confidence 357899999999999985
No 16
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=77.94 E-value=16 Score=39.93 Aligned_cols=62 Identities=13% Similarity=0.206 Sum_probs=48.5
Q ss_pred CccceEEEeecceEEEECCCCCEEEEEeCCCCCCcccEEee--cCCCC-cccEEEecCCe-EEEEE
Q 010629 400 DNQQMILAGGDQEAVVISPGGSILTSIDLPAPPTHALVCED--FSNDG-LTDVILMTSNG-VYGFV 461 (505)
Q Consensus 400 ~~~~~IlA~Ge~~~~ils~~G~vl~s~~Lp~pP~ap~Iv~D--fngDG-~nDiIVvT~~G-iygfv 461 (505)
+..+.|++-||+.+.+++.+|.+..+.+|..+|++=-.+.= -+..+ -+=+||.|.++ +..|-
T Consensus 251 ~~~~~IvvLger~Lf~l~~~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~ 316 (418)
T PF14727_consen 251 SSESDIVVLGERSLFCLKDNGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE 316 (418)
T ss_pred CCCceEEEEecceEEEEcCCCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe
Confidence 36788999999999999999999999999998887665443 33322 12389999988 77773
No 17
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=77.55 E-value=21 Score=38.90 Aligned_cols=90 Identities=13% Similarity=0.176 Sum_probs=56.2
Q ss_pred cCceEEEecCCCCCCcceeeeeeccc---cccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEE-eecceEEEECC-
Q 010629 344 NRGEVTAYSPGLHGHDAIWQWQLLTD---ATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILA-GGDQEAVVISP- 418 (505)
Q Consensus 344 s~G~vTs~~~~g~g~~~~~~Wq~~T~---a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA-~Ge~~~~ils~- 418 (505)
.+|.|+|++.. +|+.+|+.... ..|... . ...-.++.. .+ .+|++ ..+..+.-+|.
T Consensus 364 ~~G~l~AlD~~----tG~~~W~~~~~~~~~~~~~g-------~-~~~~~~~~~-----~g--~~v~~g~~dG~l~ald~~ 424 (488)
T cd00216 364 GKGGLAALDPK----TGKVVWEKREGTIRDSWNIG-------F-PHWGGSLAT-----AG--NLVFAGAADGYFRAFDAT 424 (488)
T ss_pred CceEEEEEeCC----CCcEeeEeeCCccccccccC-------C-cccCcceEe-----cC--CeEEEECCCCeEEEEECC
Confidence 47999999963 45899998776 223211 0 101111111 11 23333 44567888886
Q ss_pred CCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe
Q 010629 419 GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG 456 (505)
Q Consensus 419 ~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~G 456 (505)
+|+++-+.+|+++-.++|++-.-+| .+.|.|.+|
T Consensus 425 tG~~lW~~~~~~~~~a~P~~~~~~g----~~yv~~~~g 458 (488)
T cd00216 425 TGKELWKFRTPSGIQATPMTYEVNG----KQYVGVMVG 458 (488)
T ss_pred CCceeeEEECCCCceEcCEEEEeCC----EEEEEEEec
Confidence 9999999999999999998754443 455555544
No 18
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=77.35 E-value=23 Score=39.40 Aligned_cols=88 Identities=15% Similarity=0.121 Sum_probs=51.5
Q ss_pred cEEEE-ecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEEE
Q 010629 338 DVVFL-TNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVI 416 (505)
Q Consensus 338 D~vFL-~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~il 416 (505)
+.||+ +..|.|.|++.. .|+.+|+.+....-...+.... ..+--.++ .....++++..+..++-|
T Consensus 70 g~vyv~s~~g~v~AlDa~----TGk~lW~~~~~~~~~~~~~~~~----~~~~rg~a------v~~~~v~v~t~dg~l~AL 135 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAK----TGKELWKYDPKLPDDVIPVMCC----DVVNRGVA------LYDGKVFFGTLDARLVAL 135 (527)
T ss_pred CEEEEECCCCcEEEEECC----CCceeeEecCCCCccccccccc----ccccccce------EECCEEEEEcCCCEEEEE
Confidence 45555 567999999964 3489999876542111000000 00000000 112346677777788888
Q ss_pred CC-CCCEEEEEeCCC-----CCCcccEEe
Q 010629 417 SP-GGSILTSIDLPA-----PPTHALVCE 439 (505)
Q Consensus 417 s~-~G~vl~s~~Lp~-----pP~ap~Iv~ 439 (505)
|. +|+++-+..+.. ..+++|++.
T Consensus 136 Da~TGk~~W~~~~~~~~~~~~~tssP~v~ 164 (527)
T TIGR03075 136 DAKTGKVVWSKKNGDYKAGYTITAAPLVV 164 (527)
T ss_pred ECCCCCEEeecccccccccccccCCcEEE
Confidence 97 999999888754 345667665
No 19
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=74.67 E-value=7.8 Score=39.80 Aligned_cols=56 Identities=20% Similarity=0.469 Sum_probs=44.2
Q ss_pred ccceEEEeecceEEEECCCC-CEEEEEeCCCCCCcccEEeecC-CCCcccEEEecCCe-EE
Q 010629 401 NQQMILAGGDQEAVVISPGG-SILTSIDLPAPPTHALVCEDFS-NDGLTDVILMTSNG-VY 458 (505)
Q Consensus 401 ~~~~IlA~Ge~~~~ils~~G-~vl~s~~Lp~pP~ap~Iv~Dfn-gDG~nDiIVvT~~G-iy 458 (505)
.+-.||++=..++-|||+.| .++.++.||+.|+.=...+-|+ .|.. |+|.|-+| ||
T Consensus 195 ~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyR--I~Va~Rdg~iy 253 (257)
T PF14779_consen 195 VSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYR--IVVACRDGKIY 253 (257)
T ss_pred cceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceE--EEEEeCCCEEE
Confidence 35667777778999999966 8899999999999666666665 5543 89999998 55
No 20
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=71.05 E-value=4.3 Score=36.79 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.9
Q ss_pred cccEEeecCCCCcccEEEecCCe-EEEE
Q 010629 434 HALVCEDFSNDGLTDVILMTSNG-VYGF 460 (505)
Q Consensus 434 ap~Iv~DfngDG~nDiIVvT~~G-iygf 460 (505)
..+.+.||+|||.|.|||-|.|. |-.|
T Consensus 3 ~al~~~d~d~dg~~eLlvGs~D~~IRvf 30 (111)
T PF14783_consen 3 TALCLFDFDGDGENELLVGSDDFEIRVF 30 (111)
T ss_pred eEEEEEecCCCCcceEEEecCCcEEEEE
Confidence 45678999999999999999998 7777
No 21
>PF12256 TcdB_toxin_midN: Insecticide toxin TcdB middle/N-terminal region; InterPro: IPR022045 This domain family is found in bacteria and archaea, and is typically between 164 and 180 amino acids in length. The family is found in association with PF05593 from PFAM. This domain is the N-terminal-sided middle region of the bacterial insecticide toxin TcdB.
Probab=70.45 E-value=3.4 Score=39.13 Aligned_cols=30 Identities=27% Similarity=0.635 Sum_probs=21.7
Q ss_pred EEeCCCCCCc-----ccEEeecCCCCcccEEEecCC
Q 010629 425 SIDLPAPPTH-----ALVCEDFSNDGLTDVILMTSN 455 (505)
Q Consensus 425 s~~Lp~pP~a-----p~Iv~DfngDG~nDiIVvT~~ 455 (505)
.+.+|.||.- .+-+.||||||+.|++. +..
T Consensus 11 ~~~~~~p~~~~~~~~~~~~~DinGdG~~dlv~-~~~ 45 (175)
T PF12256_consen 11 PVTIPLPPGDSYDLSQVSVADINGDGTADLVW-SSP 45 (175)
T ss_pred cccccCCCcccccccEEEEEEeCCCCCEEEEE-ecC
Confidence 4445555444 46899999999999999 443
No 22
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=68.18 E-value=66 Score=37.85 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=42.1
Q ss_pred ceEEEECC-CCCEEEEEeC-CC-----CCCcccEEeecCC-CC--cccEEEecCCeEEEEEEeccCChhhH
Q 010629 411 QEAVVISP-GGSILTSIDL-PA-----PPTHALVCEDFSN-DG--LTDVILMTSNGVYGFVQTRQPGALFF 471 (505)
Q Consensus 411 ~~~~ils~-~G~vl~s~~L-p~-----pP~ap~Iv~Dfng-DG--~nDiIVvT~~Giygfv~~~~~g~~~f 471 (505)
.+++=||. +|++.=.++. |+ =..++|++.|+.. || ..=|++.|++| +-|++-+++|..+.
T Consensus 414 ~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G-~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 414 SSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQG-QIYVLDRRTGEPIV 483 (764)
T ss_pred ceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCC-EEEEEECCCCCEEe
Confidence 45666786 9999888877 32 2447777889976 77 23477788888 46777888875443
No 23
>smart00191 Int_alpha Integrin alpha (beta-propellor repeats). Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.
Probab=67.37 E-value=3.1 Score=32.47 Aligned_cols=27 Identities=22% Similarity=0.490 Sum_probs=19.3
Q ss_pred EeecCCCCcccEEEecC--------CeEEEEEEec
Q 010629 438 CEDFSNDGLTDVILMTS--------NGVYGFVQTR 464 (505)
Q Consensus 438 v~DfngDG~nDiIVvT~--------~Giygfv~~~ 464 (505)
+.|+|+||..||+|-.- ..+|.|-...
T Consensus 12 ~~d~ngDg~~dl~vGAP~~~~~~~~G~vy~~~~~~ 46 (58)
T smart00191 12 VGDVNGDGYPDLLVGAPRANDAGETGAVYVYFGSS 46 (58)
T ss_pred ccccCCCCccCEEEeCcccCCCCCCCEEEEEEecC
Confidence 68999999999887532 2366666544
No 24
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=64.13 E-value=17 Score=35.13 Aligned_cols=47 Identities=26% Similarity=0.457 Sum_probs=37.4
Q ss_pred EEEe--ecceEEEECCCCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecC
Q 010629 405 ILAG--GDQEAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTS 454 (505)
Q Consensus 405 IlA~--Ge~~~~ils~~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~ 454 (505)
|+.+ +...+.++|++|+++..+++|.+ .|...-|-|+..+.|.|.|.
T Consensus 197 l~va~~~~~~I~~~~p~G~~~~~i~~p~~---~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 197 LWVADWGGGRIVVFDPDGKLLREIELPVP---RPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EEEEEETTTEEEEEETTSCEEEEEE-SSS---SEEEEEEESTTSSEEEEEEB
T ss_pred EEEEEcCCCEEEEECCCccEEEEEcCCCC---CEEEEEEECCCCCEEEEEeC
Confidence 4444 67889999999999999999943 56677788888899988885
No 25
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=60.48 E-value=3.3 Score=27.20 Aligned_cols=11 Identities=45% Similarity=1.032 Sum_probs=8.6
Q ss_pred eccCCCceeEE
Q 010629 236 DINGDGVLDHV 246 (505)
Q Consensus 236 DINgDGVlD~V 246 (505)
|+|+||.||.+
T Consensus 1 DvN~DG~vna~ 11 (21)
T PF00404_consen 1 DVNGDGKVNAI 11 (21)
T ss_dssp -TTSSSSSSHH
T ss_pred CCCCCCcCCHH
Confidence 89999999864
No 26
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=52.72 E-value=1.4e+02 Score=35.04 Aligned_cols=115 Identities=16% Similarity=0.226 Sum_probs=73.2
Q ss_pred ccEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEEE
Q 010629 337 GDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVI 416 (505)
Q Consensus 337 ~D~vFL~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~il 416 (505)
+-+.+|-+++.++|=+. |. ..+|++..+.--.-. | ...++=|+. .-..+..|+.+||+.-+-+
T Consensus 183 RgL~vl~~~~flScsND-g~----Ir~w~~~ge~l~~~~----g---htn~vYsis-----~~~~~~~Ivs~gEDrtlri 245 (745)
T KOG0301|consen 183 RGLAVLDDSHFLSCSND-GS----IRLWDLDGEVLLEMH----G---HTNFVYSIS-----MALSDGLIVSTGEDRTLRI 245 (745)
T ss_pred eeeEEecCCCeEeecCC-ce----EEEEeccCceeeeee----c---cceEEEEEE-----ecCCCCeEEEecCCceEEE
Confidence 34668888888888654 32 789998444332221 1 123333444 2345678999999877777
Q ss_pred CCCCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe-EEEEEEe--ccCChhhHHH
Q 010629 417 SPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG-VYGFVQT--RQPGALFFST 473 (505)
Q Consensus 417 s~~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~G-iygfv~~--~~~g~~~fs~ 473 (505)
=.++...+.+.||+-.+=-.-+-+ || ||+|.++|| ||.|-+. |..+.+.+=+
T Consensus 246 W~~~e~~q~I~lPttsiWsa~~L~-Ng----DIvvg~SDG~VrVfT~~k~R~As~evl~a 300 (745)
T KOG0301|consen 246 WKKDECVQVITLPTTSIWSAKVLL-NG----DIVVGGSDGRVRVFTVDKDRKASDEVLKA 300 (745)
T ss_pred eecCceEEEEecCccceEEEEEee-CC----CEEEeccCceEEEEEecccccCCHHHHHH
Confidence 667799999999985543322221 33 799999999 8888665 3366554433
No 27
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=50.04 E-value=18 Score=32.30 Aligned_cols=32 Identities=31% Similarity=0.479 Sum_probs=25.2
Q ss_pred EEccCCCeeEEEe-cCCC----CeeeeccCCCceeEE
Q 010629 215 VHLASGRTVCKLH-LQEG----GLHADINGDGVLDHV 246 (505)
Q Consensus 215 iHL~SGrtlckL~-L~~~----~l~aDINgDGVlD~V 246 (505)
+-...|...|.+. |++| ..|+|.|+||.||.-
T Consensus 36 ~~~~~~~~~~~f~~lp~G~YAi~v~hD~N~NgklD~n 72 (112)
T PF09912_consen 36 VPAKGGTVTITFEDLPPGTYAIAVFHDENGNGKLDTN 72 (112)
T ss_pred EEcCCCcEEEEECCCCCccEEEEEEEeCCCCCcCCcC
Confidence 4556788889986 6666 456799999999975
No 28
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=49.43 E-value=97 Score=32.41 Aligned_cols=46 Identities=24% Similarity=0.376 Sum_probs=33.7
Q ss_pred Eeecc--eEEEECCCCCEEEEEeCC-CCCCcccEEeecCCCCcccEEEecCCe
Q 010629 407 AGGDQ--EAVVISPGGSILTSIDLP-APPTHALVCEDFSNDGLTDVILMTSNG 456 (505)
Q Consensus 407 A~Ge~--~~~ils~~G~vl~s~~Lp-~pP~ap~Iv~DfngDG~nDiIVvT~~G 456 (505)
+..+. .+++.+++|+++..++|| ..|+.+-.. |...++|.|.+..-
T Consensus 229 ~a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~Fg----G~~~~~L~iTs~~~ 277 (307)
T COG3386 229 AAVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFG----GPDLNTLYITSARS 277 (307)
T ss_pred ecccCCceEEEECCCCcEEEEEECCCCCCccceEe----CCCcCEEEEEecCC
Confidence 55554 789999999999999999 556655543 45577777776653
No 29
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=45.92 E-value=1.3e+02 Score=27.50 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=21.1
Q ss_pred CCCcccEEeecCCCCcccEEEecCCeE
Q 010629 431 PPTHALVCEDFSNDGLTDVILMTSNGV 457 (505)
Q Consensus 431 pP~ap~Iv~DfngDG~nDiIVvT~~Gi 457 (505)
.|+ ....-|+|+||.-.||+.-++|-
T Consensus 82 ~~~-~~~~~D~~gdG~~eLI~GwsnGk 107 (111)
T PF14783_consen 82 QVT-SMAFYDINGDGVPELIVGWSNGK 107 (111)
T ss_pred CeE-EEEEEcCCCCCceEEEEEecCCe
Confidence 433 46678999999999999988883
No 30
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=43.61 E-value=23 Score=29.40 Aligned_cols=50 Identities=22% Similarity=0.330 Sum_probs=34.4
Q ss_pred eEEEECCCCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCeEEEEEEec
Q 010629 412 EAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTR 464 (505)
Q Consensus 412 ~~~ils~~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~Giygfv~~~ 464 (505)
.+.|.|.+|+++.+++|+..+.. ...|.=||.++==-...+|.|-|..+.
T Consensus 28 ~v~I~d~~G~~V~t~~~~~~~~G---~~~~~WdG~d~~G~~~~~G~Y~~~v~a 77 (81)
T PF13860_consen 28 TVTIYDSNGQVVRTISLGSQSAG---EHSFTWDGKDDDGNPVPDGTYTFRVTA 77 (81)
T ss_dssp EEEEEETTS-EEEEEEEEECSSE---EEEEEE-SB-TTS-B--SEEEEEEEEE
T ss_pred EEEEEcCCCCEEEEEEcCCcCCc---eEEEEECCCCCCcCCCCCCCEEEEEEE
Confidence 68888999999999999666553 457778888876667788998887654
No 31
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=42.84 E-value=80 Score=33.99 Aligned_cols=44 Identities=23% Similarity=0.464 Sum_probs=38.5
Q ss_pred eEEEECCCCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe-EEEE
Q 010629 412 EAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG-VYGF 460 (505)
Q Consensus 412 ~~~ils~~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~G-iygf 460 (505)
.+.|.+.+|++|.++.++. .++|...|+.+ .++||++++| +.-|
T Consensus 62 ~I~iys~sG~ll~~i~w~~---~~iv~~~wt~~--e~LvvV~~dG~v~vy 106 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDS---GRIVGMGWTDD--EELVVVQSDGTVRVY 106 (410)
T ss_pred EEEEECCCCCEeEEEEECC---CCEEEEEECCC--CeEEEEEcCCEEEEE
Confidence 4888899999999999988 89999999884 7899999999 4555
No 32
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.12 E-value=59 Score=38.88 Aligned_cols=107 Identities=21% Similarity=0.272 Sum_probs=73.4
Q ss_pred cccCceEeeCCCCCCCCccccccEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEee
Q 010629 316 EVATPILIPRSDGHRHRKGSHGDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFS 395 (505)
Q Consensus 316 ev~~Plii~~~~g~~~r~~~~~D~vFL~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~ 395 (505)
+..+|+|.+..++....-+...-.||.+..|.++ ......|+..|.
T Consensus 200 ~s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~----------------~~~~l~ws~~P~------------------ 245 (877)
T KOG2063|consen 200 ESRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIA----------------QRGTLVWSEVPL------------------ 245 (877)
T ss_pred ccCCCeEEEecCCceEEEccCceEEEEecCCccc----------------CCCceEecccch------------------
Confidence 5789999999776444444556677777777665 224455655422
Q ss_pred cccCCccceEEEeecceEEEECC-CCCEEEEE-eCCCCCCcccEEeecCCCCcccEEEecC-CeEEEEEEecc
Q 010629 396 LRVHDNQQMILAGGDQEAVVISP-GGSILTSI-DLPAPPTHALVCEDFSNDGLTDVILMTS-NGVYGFVQTRQ 465 (505)
Q Consensus 396 lr~~~~~~~IlA~Ge~~~~ils~-~G~vl~s~-~Lp~pP~ap~Iv~DfngDG~nDiIVvT~-~Giygfv~~~~ 465 (505)
...-+.|||+|.+...+-|-|. +|..+.|+ +|+..+. +.+.++ -+|++++ .++|-++-+..
T Consensus 246 -~v~~~~PYlIa~~~~~veI~s~~~~qlvQSI~~~~~~~~----l~s~~~----~i~~~~~~s~v~~L~p~~~ 309 (877)
T KOG2063|consen 246 -SVVVESPYLIALLDRSVEIRSKLDGQLVQSITPLSNGRS----LLSAHN----GIIFVASLSNVWILVPVSN 309 (877)
T ss_pred -hhcccCceEEEEccccEEEEeccCHHHhhccccccccce----eeecCC----cEEEEEeccceEEEEeccc
Confidence 2244679999999999999996 88888888 6655432 223322 7888888 89999887774
No 33
>PF07483 W_rich_C: Tryptophan-rich Synechocystis species C-terminal domain; InterPro: IPR011121 This entry represents a tryptophan-rich domain found in membrane proteins of Synechocystis and Bradyrhizobium; it is normally found in 2 to 3 copies.
Probab=39.20 E-value=7.6 Score=35.11 Aligned_cols=13 Identities=46% Similarity=1.002 Sum_probs=11.1
Q ss_pred CCeeeeccCCCce
Q 010629 231 GGLHADINGDGVL 243 (505)
Q Consensus 231 ~~l~aDINgDGVl 243 (505)
..++.||||||+|
T Consensus 96 ~~F~qDlNgDG~I 108 (109)
T PF07483_consen 96 TSFHQDLNGDGTI 108 (109)
T ss_pred HHhCccccCCCcC
Confidence 4677899999987
No 34
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=36.60 E-value=72 Score=38.83 Aligned_cols=102 Identities=20% Similarity=0.262 Sum_probs=59.4
Q ss_pred eeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEe--------ecceEEEE--CC-CCCE--EEEEeC
Q 010629 362 WQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAG--------GDQEAVVI--SP-GGSI--LTSIDL 428 (505)
Q Consensus 362 ~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~--------Ge~~~~il--s~-~G~v--l~s~~L 428 (505)
..-|.... .|.......|.--+.+|=-||.+-=+..++-+++|+++ +|.-.|-| .. .|.. -.++.+
T Consensus 299 ~if~~~~~-~~~~~~~~~GeQ~GSYFG~sl~~vDlNgDG~tDLLVGAP~y~~~~~~e~GrVYVy~~~~~~~~~~~~~L~~ 377 (1030)
T KOG3637|consen 299 YIFQLSGK-SLRPLQVLRGEQIGSYFGYSLAAVDLNGDGLTDLLVGAPLYFERDRYEVGRVYVYLNGGLGLFPEQITLRG 377 (1030)
T ss_pred EEEecccc-ccceeeeeeeeeehhhcCeeEEEEEcCCCCCcceEEecCccccCCCCcceEEEEEEecCCCCcccceeEec
Confidence 33444444 67666554443113677789999888888877744443 12222222 22 3423 223444
Q ss_pred CCCC-----CcccEEeecCCCCcccEEEecC---C--e-EEEEEEec
Q 010629 429 PAPP-----THALVCEDFSNDGLTDVILMTS---N--G-VYGFVQTR 464 (505)
Q Consensus 429 p~pP-----~ap~Iv~DfngDG~nDiIVvT~---~--G-iygfv~~~ 464 (505)
|.+| .|---++|+|+||+|||.|--- + | ||.|--..
T Consensus 378 ~~~~~~RFG~Ala~LGDlN~DG~nDVAVGAP~eg~~~GaVYIy~Gs~ 424 (1030)
T KOG3637|consen 378 PGGPSGRFGSALAALGDLNQDGYNDVAVGAPFEGDNQGAVYIYHGSK 424 (1030)
T ss_pred CCCcccchhhhhhcccCcccCCCCceEEeCCcCCCCCceEEEEcCCC
Confidence 4443 2344578999999999999753 2 5 99995443
No 35
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=35.74 E-value=1.8e+02 Score=30.59 Aligned_cols=102 Identities=19% Similarity=0.213 Sum_probs=46.3
Q ss_pred ccEEEEe-cCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEE
Q 010629 337 GDVVFLT-NRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVV 415 (505)
Q Consensus 337 ~D~vFL~-s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~i 415 (505)
.||.|.. +.|-+ +...+ ...=-.+-+.+|....... + ......|.++.+. +. -.+++|+..+++
T Consensus 20 ~dV~F~d~~~G~~--VG~~g-----~il~T~DGG~tW~~~~~~~---~-~~~~~~l~~I~f~--~~--~g~ivG~~g~ll 84 (302)
T PF14870_consen 20 LDVAFVDPNHGWA--VGAYG-----TILKTTDGGKTWQPVSLDL---D-NPFDYHLNSISFD--GN--EGWIVGEPGLLL 84 (302)
T ss_dssp EEEEESSSS-EEE--EETTT-----EEEEESSTTSS-EE--------S------EEEEEEEE--TT--EEEEEEETTEEE
T ss_pred EEEEEecCCEEEE--EecCC-----EEEEECCCCccccccccCC---C-ccceeeEEEEEec--CC--ceEEEcCCceEE
Confidence 5666764 33433 33322 4444445567776653211 1 2234566666553 22 267789998888
Q ss_pred ECC-CCCEEEEEeCCCC-CCcccEEeecCCCCcccEEEecCCe
Q 010629 416 ISP-GGSILTSIDLPAP-PTHALVCEDFSNDGLTDVILMTSNG 456 (505)
Q Consensus 416 ls~-~G~vl~s~~Lp~p-P~ap~Iv~DfngDG~nDiIVvT~~G 456 (505)
.+. .|.-=..++|+.+ |-.|.-+..+ +++ .+++++..|
T Consensus 85 ~T~DgG~tW~~v~l~~~lpgs~~~i~~l-~~~--~~~l~~~~G 124 (302)
T PF14870_consen 85 HTTDGGKTWERVPLSSKLPGSPFGITAL-GDG--SAELAGDRG 124 (302)
T ss_dssp EESSTTSS-EE----TT-SS-EEEEEEE-ETT--EEEEEETT-
T ss_pred EecCCCCCcEEeecCCCCCCCeeEEEEc-CCC--cEEEEcCCC
Confidence 887 6777777777654 4444434433 332 555555554
No 36
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=35.58 E-value=22 Score=43.01 Aligned_cols=31 Identities=32% Similarity=0.583 Sum_probs=23.4
Q ss_pred ccEEeecCCCCcccEEEec---------CCe-EEEEEEecc
Q 010629 435 ALVCEDFSNDGLTDVILMT---------SNG-VYGFVQTRQ 465 (505)
Q Consensus 435 p~Iv~DfngDG~nDiIVvT---------~~G-iygfv~~~~ 465 (505)
-+-+.|+|+||.+||||-- ..| ||-|.+...
T Consensus 326 sl~~vDlNgDG~tDLLVGAP~y~~~~~~e~GrVYVy~~~~~ 366 (1030)
T KOG3637|consen 326 SLAAVDLNGDGLTDLLVGAPLYFERDRYEVGRVYVYLNGGL 366 (1030)
T ss_pred eEEEEEcCCCCCcceEEecCccccCCCCcceEEEEEEecCC
Confidence 4667899999999977753 235 999977663
No 37
>PF12256 TcdB_toxin_midN: Insecticide toxin TcdB middle/N-terminal region; InterPro: IPR022045 This domain family is found in bacteria and archaea, and is typically between 164 and 180 amino acids in length. The family is found in association with PF05593 from PFAM. This domain is the N-terminal-sided middle region of the bacterial insecticide toxin TcdB.
Probab=33.72 E-value=24 Score=33.35 Aligned_cols=17 Identities=53% Similarity=0.610 Sum_probs=14.5
Q ss_pred eeeeccCCCceeEEEee
Q 010629 233 LHADINGDGVLDHVQAV 249 (505)
Q Consensus 233 l~aDINgDGVlD~V~a~ 249 (505)
..+||||||..|.|-..
T Consensus 28 ~~~DinGdG~~dlv~~~ 44 (175)
T PF12256_consen 28 SVADINGDGTADLVWSS 44 (175)
T ss_pred EEEEeCCCCCEEEEEec
Confidence 45899999999999854
No 38
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=33.21 E-value=45 Score=22.94 Aligned_cols=19 Identities=16% Similarity=0.414 Sum_probs=15.6
Q ss_pred EEeecceEEEECCCCCEEE
Q 010629 406 LAGGDQEAVVISPGGSILT 424 (505)
Q Consensus 406 lA~Ge~~~~ils~~G~vl~ 424 (505)
||+|+.+.++|+.+|++..
T Consensus 4 ia~G~~ht~al~~~g~v~~ 22 (30)
T PF13540_consen 4 IACGGYHTCALTSDGEVYC 22 (30)
T ss_dssp EEEESSEEEEEE-TTEEEE
T ss_pred EEecCCEEEEEEcCCCEEE
Confidence 7899999999999998754
No 39
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.15 E-value=26 Score=33.26 Aligned_cols=28 Identities=43% Similarity=0.622 Sum_probs=21.6
Q ss_pred cCCCeeEEEe--cCCCCe----eeeccCCCceeE
Q 010629 218 ASGRTVCKLH--LQEGGL----HADINGDGVLDH 245 (505)
Q Consensus 218 ~SGrtlckL~--L~~~~l----~aDINgDGVlD~ 245 (505)
.+|.++.+.. |+.|.| +.|.||||-||-
T Consensus 72 it~dpv~~~f~~Lk~G~YAvaa~qD~nGdgkldt 105 (151)
T COG4704 72 ITGDPVSKSFYGLKPGKYAVAAFQDENGDGKLDT 105 (151)
T ss_pred ccCCchhheeecCCCccEEEEEEEecCCCccccc
Confidence 4788888855 777744 469999999985
No 40
>PF10144 SMP_2: Bacterial virulence factor haemolysin; InterPro: IPR019305 This entry represents a group of bacterial proteins that are membrane proteins that effect the expression of haemolysin under anaerobic conditions [].
Probab=32.56 E-value=1.7e+02 Score=29.24 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=17.1
Q ss_pred cceEEEeecceEEEECCCCCEEEEE
Q 010629 402 QQMILAGGDQEAVVISPGGSILTSI 426 (505)
Q Consensus 402 ~~~IlA~Ge~~~~ils~~G~vl~s~ 426 (505)
+|+|+. |+|.|.+|.++|.-
T Consensus 84 d~~Vld-----AsIYd~~G~lLA~S 103 (210)
T PF10144_consen 84 DPFVLD-----ASIYDADGVLLAQS 103 (210)
T ss_pred CCeEeE-----EEEECCCCCEEEEc
Confidence 788875 78999999999876
No 41
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=30.58 E-value=82 Score=31.59 Aligned_cols=52 Identities=23% Similarity=0.311 Sum_probs=36.0
Q ss_pred ecceEEEECCCCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCeEEEEEEe
Q 010629 409 GDQEAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQT 463 (505)
Q Consensus 409 Ge~~~~ils~~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~Giygfv~~ 463 (505)
+.-.+.|.|.+|+++.++.|...+.. ..+|+=||.++==..-.+|.|-|..+
T Consensus 122 ~~v~i~I~d~~G~~V~t~~lg~~~aG---~~~f~WDG~d~~G~~~~~G~Yt~~v~ 173 (221)
T PRK12634 122 GFVNFEITDANGAFVKQISVPASAAG---EVSFAWDGTDANGNRMAAGKYGVTAT 173 (221)
T ss_pred CeEEEEEEcCCCCEEEEEecCCcCCC---ceeEEECCCCCCCCcCCCeeeEEEEE
Confidence 33458888999999999999766644 35688888766322235676666554
No 42
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=29.49 E-value=92 Score=33.90 Aligned_cols=45 Identities=22% Similarity=0.322 Sum_probs=35.4
Q ss_pred eeEEeecccCCccceEEEeecceEEEE-CC-CCCEEEEEeCCCCCCc
Q 010629 390 TLKAFSLRVHDNQQMILAGGDQEAVVI-SP-GGSILTSIDLPAPPTH 434 (505)
Q Consensus 390 sL~af~lr~~~~~~~IlA~Ge~~~~il-s~-~G~vl~s~~Lp~pP~a 434 (505)
..+..|+-.+++.-+|+|+|++..+=+ |. +|.+|.+++.|.+.+-
T Consensus 346 ~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e 392 (425)
T KOG2695|consen 346 LSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASE 392 (425)
T ss_pred cccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCcccc
Confidence 444555666778889999999988766 76 9999999999886554
No 43
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.36 E-value=3.1e+02 Score=29.19 Aligned_cols=99 Identities=19% Similarity=0.292 Sum_probs=60.1
Q ss_pred cEEEEecCceEEEecCCCCCCcceeeeeeccc-cccccCCCCCCCCCcCeeeeeeEEeecccCCcc--ceEEEeecceEE
Q 010629 338 DVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTD-ATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQ--QMILAGGDQEAV 414 (505)
Q Consensus 338 D~vFL~s~G~vTs~~~~g~g~~~~~~Wq~~T~-a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~--~~IlA~Ge~~~~ 414 (505)
.++--+=+|.+||+++.| ++.||-.|. +-| |+.-.-.|+-+...+..++-- +.=.| -+++
T Consensus 191 sv~i~~VdG~l~~f~~sG-----~qvwr~~t~GpIf---------~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~---ghL~ 253 (354)
T KOG4649|consen 191 SVIITTVDGVLTSFDESG-----RQVWRPATKGPIF---------MEPCESRPSCQQISLENENCFCAPLPIA---GHLL 253 (354)
T ss_pred eEEEEEeccEEEEEcCCC-----cEEEeecCCCcee---------cccccCCCcceEEEEecCCeEEEecccc---ceEE
Confidence 456667789999999988 899998775 555 232233488788888665421 00011 2233
Q ss_pred EECCCCCEEE-------EEeCCCCCCc-ccEEeecCCCCcccEEEec
Q 010629 415 VISPGGSILT-------SIDLPAPPTH-ALVCEDFSNDGLTDVILMT 453 (505)
Q Consensus 415 ils~~G~vl~-------s~~Lp~pP~a-p~Iv~DfngDG~nDiIVvT 453 (505)
.-+..|..+. -++|++|-.. |-++.-=++||.-=|+-+.
T Consensus 254 w~~~~g~t~~vy~~p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~ 300 (354)
T KOG4649|consen 254 WATQSGTTLHVYLSPKLRFDLHSPGISYPKLLRRSSGDGKVMILMTS 300 (354)
T ss_pred EEecCCcEEEEEeCcccceeccCCCCcchhhhhhhcCCCcEEEEEec
Confidence 3344442221 2566777776 7777777888877665443
No 44
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=28.10 E-value=2.6e+02 Score=30.15 Aligned_cols=169 Identities=18% Similarity=0.284 Sum_probs=86.3
Q ss_pred cccCceEEEEecCCCcccceeccccCCCCCCCccCCccccCcCCCCCCCcccccCceEeeCCC---CCCCCccccccEEE
Q 010629 265 VLRPCWAVATSGVPVREQLFNASICHHSPFNLFPHGEFSRNFGRTSDVASLEVATPILIPRSD---GHRHRKGSHGDVVF 341 (505)
Q Consensus 265 ~~~~C~avatSGvP~re~LFn~sIC~~~~f~~f~~~~~~r~~~~~~d~~~~ev~~Plii~~~~---g~~~r~~~~~D~vF 341 (505)
+.+.||.+--+| +.=|. ++|..+.+.-+...+ .|.+ . +..++++.+-.+ .+.-..+...-.+|
T Consensus 135 ~~PGC~~iyP~~----~~~F~-~lC~DGsl~~v~Ld~------~Gk~--~-~~~t~~F~~~~dp~f~~~~~~~~~~~~~F 200 (342)
T PF06433_consen 135 DTPGCWLIYPSG----NRGFS-MLCGDGSLLTVTLDA------DGKE--A-QKSTKVFDPDDDPLFEHPAYSRDGGRLYF 200 (342)
T ss_dssp EGTSEEEEEEEE----TTEEE-EEETTSCEEEEEETS------TSSE--E-EEEEEESSTTTS-B-S--EEETTTTEEEE
T ss_pred cCCCEEEEEecC----CCceE-EEecCCceEEEEECC------CCCE--e-EeeccccCCCCcccccccceECCCCeEEE
Confidence 469999998775 33577 999988763332110 0111 0 112222221111 00000122345899
Q ss_pred EecCceEEEecCCCCCCcceeeeeecccc----ccccCCCCCCCCCcCeee-eeeEEeec---ccCCccceEEEeecceE
Q 010629 342 LTNRGEVTAYSPGLHGHDAIWQWQLLTDA----TWSNLPSPSGMTEASTVV-PTLKAFSL---RVHDNQQMILAGGDQEA 413 (505)
Q Consensus 342 L~s~G~vTs~~~~g~g~~~~~~Wq~~T~a----~W~~~~~~~g~~e~~~~~-PsL~af~l---r~~~~~~~IlA~Ge~~~ 413 (505)
.+=+|.|-.++-++-+-.....|.+-|++ .|.. .| .+.-.+. ++=..|=| ...++.. -+..++
T Consensus 201 ~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrP----GG-~Q~~A~~~~~~rlyvLMh~g~~gsHK----dpgteV 271 (342)
T PF06433_consen 201 VSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRP----GG-WQLIAYHAASGRLYVLMHQGGEGSHK----DPGTEV 271 (342)
T ss_dssp EBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-----S-SS-EEEETTTTEEEEEEEE--TT-TT----S-EEEE
T ss_pred EecCCEEEEEeccCCcccccCcccccCccccccCcCC----cc-eeeeeeccccCeEEEEecCCCCCCcc----CCceEE
Confidence 99999999998877443445677766643 5644 33 2211111 11111111 1122221 245689
Q ss_pred EEECC-CCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecC-Ce-EEEE
Q 010629 414 VVISP-GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTS-NG-VYGF 460 (505)
Q Consensus 414 ~ils~-~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~-~G-iygf 460 (505)
-++|. ++++++.++|+.+.. -.-++.|-.--|+..+. +| ++.|
T Consensus 272 Wv~D~~t~krv~Ri~l~~~~~----Si~Vsqd~~P~L~~~~~~~~~l~v~ 317 (342)
T PF06433_consen 272 WVYDLKTHKRVARIPLEHPID----SIAVSQDDKPLLYALSAGDGTLDVY 317 (342)
T ss_dssp EEEETTTTEEEEEEEEEEEES----EEEEESSSS-EEEEEETTTTEEEEE
T ss_pred EEEECCCCeEEEEEeCCCccc----eEEEccCCCcEEEEEcCCCCeEEEE
Confidence 99997 999999999987643 22335555555554443 33 6555
No 45
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=27.90 E-value=5.4e+02 Score=26.67 Aligned_cols=106 Identities=16% Similarity=0.296 Sum_probs=67.9
Q ss_pred ccccCceEeeCCCCCCCCccccccEEEEecCceEEEecCCCCCCcceeeeeecccc--ccccCCCCCCCCCcCeeeeeeE
Q 010629 315 LEVATPILIPRSDGHRHRKGSHGDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDA--TWSNLPSPSGMTEASTVVPTLK 392 (505)
Q Consensus 315 ~ev~~Plii~~~~g~~~r~~~~~D~vFL~s~G~vTs~~~~g~g~~~~~~Wq~~T~a--~W~~~~~~~g~~e~~~~~PsL~ 392 (505)
.++..|++.. +| .++|-+.+|.+=|++.+ +|+..|+..++. .|... -
T Consensus 101 ~~~~~~~~~~--~G---------~i~~g~~~g~~y~ld~~----~G~~~W~~~~~~~~~~~~~--------------~-- 149 (370)
T COG1520 101 AQLSGPILGS--DG---------KIYVGSWDGKLYALDAS----TGTLVWSRNVGGSPYYASP--------------P-- 149 (370)
T ss_pred eeccCceEEe--CC---------eEEEecccceEEEEECC----CCcEEEEEecCCCeEEecC--------------c--
Confidence 3567788875 23 38999999999999983 339999987776 22111 0
Q ss_pred EeecccCCccceEEEe-ecceEEEECC-CCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe----EEEE
Q 010629 393 AFSLRVHDNQQMILAG-GDQEAVVISP-GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG----VYGF 460 (505)
Q Consensus 393 af~lr~~~~~~~IlA~-Ge~~~~ils~-~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~G----iygf 460 (505)
--.+..|+.. .+.++.-|+. +|..+=.++.+.+ ....+..... -..|+++++.++ +|++
T Consensus 150 ------v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~~--~~~~~vy~~~~~~~~~~~a~ 214 (370)
T COG1520 150 ------VVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAP-LSLSIYGSPA--IASGTVYVGSDGYDGILYAL 214 (370)
T ss_pred ------EEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCc-cccccccCce--eecceEEEecCCCcceEEEE
Confidence 0112224444 5677888887 6999888888765 4444444444 555677777663 5555
No 46
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=27.54 E-value=4.5e+02 Score=23.48 Aligned_cols=57 Identities=16% Similarity=0.220 Sum_probs=38.9
Q ss_pred cceEEEee-cceEEEECC-CCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe-EEEEEE
Q 010629 402 QQMILAGG-DQEAVVISP-GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG-VYGFVQ 462 (505)
Q Consensus 402 ~~~IlA~G-e~~~~ils~-~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~G-iygfv~ 462 (505)
..++++.. +..+.|.|. +++.+..+.. ...++...+|+.|| +-|++.+.+| ++.|-.
T Consensus 147 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~ 206 (289)
T cd00200 147 GTFVASSSQDGTIKLWDLRTGKCVATLTG---HTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDL 206 (289)
T ss_pred CCEEEEEcCCCcEEEEEccccccceeEec---CccccceEEECCCc-CEEEEecCCCcEEEEEC
Confidence 44555555 677888887 6888887773 33466677888888 5577777677 666644
No 47
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=26.53 E-value=4.7e+02 Score=23.36 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=38.2
Q ss_pred cceEEEee-cceEEEECC-CCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecC-Ce-EEEEEE
Q 010629 402 QQMILAGG-DQEAVVISP-GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTS-NG-VYGFVQ 462 (505)
Q Consensus 402 ~~~IlA~G-e~~~~ils~-~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~-~G-iygfv~ 462 (505)
..++++.+ +..+.+.+. +++.+..+. ....++....|+.| +.+|+.+. +| ++.|-.
T Consensus 105 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~d~ 164 (289)
T cd00200 105 GRILSSSSRDKTIKVWDVETGKCLTTLR---GHTDWVNSVAFSPD--GTFVASSSQDGTIKLWDL 164 (289)
T ss_pred CCEEEEecCCCeEEEEECCCcEEEEEec---cCCCcEEEEEEcCc--CCEEEEEcCCCcEEEEEc
Confidence 45677676 677888887 588777766 22345667778887 67777776 66 666643
No 48
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=25.55 E-value=1.6e+02 Score=20.91 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=18.0
Q ss_pred CCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe-EEEE
Q 010629 420 GSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG-VYGF 460 (505)
Q Consensus 420 G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~G-iygf 460 (505)
|+++=+.+++.+-...|++. ||. |.|.|.+| +|+|
T Consensus 1 G~~~W~~~~~~~~~~~~~v~----~g~--vyv~~~dg~l~al 36 (40)
T PF13570_consen 1 GKVLWSYDTGGPIWSSPAVA----GGR--VYVGTGDGNLYAL 36 (40)
T ss_dssp S-EEEEEE-SS---S--EEC----TSE--EEEE-TTSEEEEE
T ss_pred CceeEEEECCCCcCcCCEEE----CCE--EEEEcCCCEEEEE
Confidence 67777888888665656554 232 67777777 7776
No 49
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=24.93 E-value=93 Score=32.79 Aligned_cols=40 Identities=30% Similarity=0.513 Sum_probs=26.7
Q ss_pred cCceeEEEccC-CCeeEEEecCC--CCe----eeeccCCCceeEEEe
Q 010629 209 KEGIEAVHLAS-GRTVCKLHLQE--GGL----HADINGDGVLDHVQA 248 (505)
Q Consensus 209 ~~GIEViHL~S-GrtlckL~L~~--~~l----~aDINgDGVlD~V~a 248 (505)
+..|=|+.|.| |..+-++.+.. +++ -.|.|+||++|.|.+
T Consensus 180 ~~~lyi~d~~t~G~l~~~i~~~~~~~gl~~~~~~D~d~DG~~D~vYa 226 (335)
T PF05567_consen 180 GAALYILDADTTGALIKKIDVPGGSGGLSSPAVVDSDGDGYVDRVYA 226 (335)
T ss_dssp -EEEEEEETTT---EEEEEEE--STT-EEEEEEE-TTSSSEE-EEEE
T ss_pred CcEEEEEECCCCCceEEEEecCCCCccccccEEEeccCCCeEEEEEE
Confidence 45788999999 99999988765 333 259999999999976
No 50
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=24.92 E-value=76 Score=33.43 Aligned_cols=54 Identities=19% Similarity=0.362 Sum_probs=34.6
Q ss_pred eEEEECC-C-CCEEEEEeCCC--CCCcccEEeecCCCCcccEEEecCC-e-EEEEEEecc
Q 010629 412 EAVVISP-G-GSILTSIDLPA--PPTHALVCEDFSNDGLTDVILMTSN-G-VYGFVQTRQ 465 (505)
Q Consensus 412 ~~~ils~-~-G~vl~s~~Lp~--pP~ap~Iv~DfngDG~nDiIVvT~~-G-iygfv~~~~ 465 (505)
.+-|+|. + |.++..+.+|. .-.+.|.+.|.|+||+.|.|-.-.- | +|=|-++..
T Consensus 182 ~lyi~d~~t~G~l~~~i~~~~~~~gl~~~~~~D~d~DG~~D~vYaGDl~GnlwR~dl~~~ 241 (335)
T PF05567_consen 182 ALYILDADTTGALIKKIDVPGGSGGLSSPAVVDSDGDGYVDRVYAGDLGGNLWRFDLSSA 241 (335)
T ss_dssp EEEEEETTT---EEEEEEE--STT-EEEEEEE-TTSSSEE-EEEEEETTSEEEEEE--TT
T ss_pred EEEEEECCCCCceEEEEecCCCCccccccEEEeccCCCeEEEEEEEcCCCcEEEEECCCC
Confidence 4567786 6 99999999876 3356778899999999998876543 4 888877654
No 51
>PF13128 DUF3954: Protein of unknown function (DUF3954)
Probab=23.51 E-value=1.1e+02 Score=24.28 Aligned_cols=29 Identities=28% Similarity=0.594 Sum_probs=22.0
Q ss_pred ccEEEEecCceEEEecCCCCCC-cceeeee
Q 010629 337 GDVVFLTNRGEVTAYSPGLHGH-DAIWQWQ 365 (505)
Q Consensus 337 ~D~vFL~s~G~vTs~~~~g~g~-~~~~~Wq 365 (505)
-|-|+.+.+|+|+.++|...|. .-...||
T Consensus 9 ~ngiYiV~~G~v~~i~pP~sGfGeq~~~w~ 38 (50)
T PF13128_consen 9 ENGIYIVKDGEVTFIEPPESGFGEQVIVWQ 38 (50)
T ss_pred CCeEEEEECCeEEEcCCCCCCcceEEEEEE
Confidence 4667888999999999876553 4466777
No 52
>CHL00114 psbX photosystem II protein X; Reviewed
Probab=23.34 E-value=51 Score=24.99 Aligned_cols=24 Identities=42% Similarity=0.739 Sum_probs=16.2
Q ss_pred ChhhHHHHHHHHHHH----HHhheeeee
Q 010629 467 GALFFSTLVGCLIVV----MGVIFVTQH 490 (505)
Q Consensus 467 g~~~fs~lvg~Liv~----~~v~f~~~~ 490 (505)
+.++.|++.|.+||+ .+++|++|.
T Consensus 6 snF~~SL~~Ga~ivvipi~~aLifvSq~ 33 (39)
T CHL00114 6 SAFINSLLLGAIIVVIPITLALLFVSQK 33 (39)
T ss_pred HHHHHHHHHHHHHhHHHhhhheEEEecc
Confidence 356677777777654 477888774
No 53
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=22.91 E-value=4.5e+02 Score=31.17 Aligned_cols=96 Identities=17% Similarity=0.162 Sum_probs=57.4
Q ss_pred CceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeec--cc-CC----ccceEE--EeecceEEE
Q 010629 345 RGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSL--RV-HD----NQQMIL--AGGDQEAVV 415 (505)
Q Consensus 345 ~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~l--r~-~~----~~~~Il--A~Ge~~~~i 415 (505)
-|.|+|+|..- ++..||...+-.=... |.| .|.--+++. .. .+ ..-+++ ++.+..+.-
T Consensus 640 ~G~l~AiDl~t----Gk~~W~~~~g~~~~~~--p~~-------~~~~~~~~~g~p~~gG~l~TagglvF~~gt~d~~l~A 706 (764)
T TIGR03074 640 WGYMAAIDLKT----GKVVWQHPNGTVRDTG--PMG-------IRMPLPIPIGVPTLGGPLATAGGLVFIGATQDNYLRA 706 (764)
T ss_pred cEEEEEEECCC----CcEeeeeECCcccccc--ccc-------cccccccccCCcccCCcEEEcCCEEEEEeCCCCEEEE
Confidence 48899999753 4899998775211111 111 110001110 00 11 123333 345677888
Q ss_pred ECC-CCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecC
Q 010629 416 ISP-GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTS 454 (505)
Q Consensus 416 ls~-~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~ 454 (505)
+|. +|++|=+.+||+...+.|+.=- .-||.-=|+|++.
T Consensus 707 ~D~~tGk~lW~~~l~~~~~a~P~tY~-~~~GkQYVvi~aG 745 (764)
T TIGR03074 707 YDLSTGKELWKARLPAGGQATPMTYM-GKDGKQYVVIVAG 745 (764)
T ss_pred EECCCCceeeEeeCCCCcccCCEEEE-ecCCEEEEEEEeC
Confidence 886 9999999999999998888764 1377776777654
No 54
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=22.77 E-value=2.9e+02 Score=25.48 Aligned_cols=56 Identities=13% Similarity=0.237 Sum_probs=33.4
Q ss_pred eEEEeecceEEEECCCCCEEEEEeCCCCCCcc-------cEEeecCCCCcccEEEecCCeEEEEEE
Q 010629 404 MILAGGDQEAVVISPGGSILTSIDLPAPPTHA-------LVCEDFSNDGLTDVILMTSNGVYGFVQ 462 (505)
Q Consensus 404 ~IlA~Ge~~~~ils~~G~vl~s~~Lp~pP~ap-------~Iv~DfngDG~nDiIVvT~~Giygfv~ 462 (505)
.+.-+|+..+.+++++|..+....-+.+|... ....+++. .|+|+.+.||++-.+-
T Consensus 102 ~~~~~Gd~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~l~~---gd~l~l~TDGl~e~~~ 164 (193)
T smart00331 102 SYANAGHSPPYLLRADGGLVEDLDDLGAPLGLEPDVEVDVRELTLEP---GDLLLLYTDGLTEARN 164 (193)
T ss_pred EEEeCCCCceEEEECCCCeEEEcCCCCceeeeCCCCcceeEEEeeCC---CCEEEEECCCccccCC
Confidence 45667888788887655554444333333321 22333433 3899999999987543
No 55
>KOG4550 consensus Predicted membrane protein [Function unknown]
Probab=22.50 E-value=95 Score=34.69 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=19.8
Q ss_pred CCcccEEeecCCCCcccEEEecC
Q 010629 432 PTHALVCEDFSNDGLTDVILMTS 454 (505)
Q Consensus 432 P~ap~Iv~DfngDG~nDiIVvT~ 454 (505)
-+.++++.||++||--||+|.-+
T Consensus 251 ~vGq~vfmDfd~dG~~dilvP~C 273 (606)
T KOG4550|consen 251 VVGQSVFMDFDGDGHMDILVPGC 273 (606)
T ss_pred eecceEEEeecCCcceeeeecce
Confidence 35788999999999999999744
No 56
>PRK09966 putative inner membrane diguanylate cyclase; Provisional
Probab=22.42 E-value=31 Score=35.75 Aligned_cols=26 Identities=23% Similarity=0.181 Sum_probs=20.5
Q ss_pred EEEeec-ceEEEECCCCCEEEEEeCCC
Q 010629 405 ILAGGD-QEAVVISPGGSILTSIDLPA 430 (505)
Q Consensus 405 IlA~Ge-~~~~ils~~G~vl~s~~Lp~ 430 (505)
+...++ ..+.|+|.+|++++....+.
T Consensus 82 l~~~~~i~~i~v~d~~G~vl~~~~~~~ 108 (407)
T PRK09966 82 LGQQGQFSTAEVRDKQQNILASWHYTR 108 (407)
T ss_pred hhcCcceeEEEEECCCCCEEEEeecCC
Confidence 335556 68999999999999887664
No 57
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=22.41 E-value=55 Score=33.92 Aligned_cols=20 Identities=35% Similarity=0.699 Sum_probs=18.9
Q ss_pred EEeeecCCccceeceecCCC
Q 010629 47 AFYAFAGRSGLLRWSRKNEN 66 (505)
Q Consensus 47 syyAf~g~tG~~RW~h~~~d 66 (505)
.|||||..||++.|+++..+
T Consensus 122 ~~y~ld~~~G~~~W~~~~~~ 141 (370)
T COG1520 122 KLYALDASTGTLVWSRNVGG 141 (370)
T ss_pred eEEEEECCCCcEEEEEecCC
Confidence 69999999999999999887
No 58
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=22.06 E-value=3.4e+02 Score=27.63 Aligned_cols=68 Identities=18% Similarity=0.330 Sum_probs=36.3
Q ss_pred eEEeecccCCccceEEEeecceEEEECCCCCEEEEEeCCC------CCCcccEEeecCCCCcccEEEecCCe-EEEE
Q 010629 391 LKAFSLRVHDNQQMILAGGDQEAVVISPGGSILTSIDLPA------PPTHALVCEDFSNDGLTDVILMTSNG-VYGF 460 (505)
Q Consensus 391 L~af~lr~~~~~~~IlA~Ge~~~~ils~~G~vl~s~~Lp~------pP~ap~Iv~DfngDG~nDiIVvT~~G-iygf 460 (505)
+++..+......=+||..-...++++|++|+++....|.. .-+.+|=-.=|+.|| .|-||.+-- .|-|
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G--~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG--NLYIVSEPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT----EEEEETTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCC--CEEEEcCCceEEEe
Confidence 3444444444445666666677888899999999999987 334455555555777 666666543 4544
No 59
>PF11688 DUF3285: Protein of unknown function (DUF3285); InterPro: IPR021702 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=21.75 E-value=74 Score=24.74 Aligned_cols=20 Identities=35% Similarity=0.517 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHhheeee
Q 010629 470 FFSTLVGCLIVVMGVIFVTQ 489 (505)
Q Consensus 470 ~fs~lvg~Liv~~~v~f~~~ 489 (505)
|+-+.+|+|.+++|++|+++
T Consensus 26 F~LT~~gll~~lv~la~l~r 45 (45)
T PF11688_consen 26 FGLTAVGLLGFLVGLAYLTR 45 (45)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 77788999999999998864
No 60
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=21.72 E-value=41 Score=22.31 Aligned_cols=11 Identities=36% Similarity=0.709 Sum_probs=9.2
Q ss_pred eeccCCCceeE
Q 010629 235 ADINGDGVLDH 245 (505)
Q Consensus 235 aDINgDGVlD~ 245 (505)
.|.|+||.|+.
T Consensus 8 ~D~d~DG~is~ 18 (25)
T PF13202_consen 8 FDTDGDGKISF 18 (25)
T ss_dssp HTTTSSSEEEH
T ss_pred HcCCCCCcCCH
Confidence 58999999974
No 61
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=21.69 E-value=1.4e+02 Score=30.05 Aligned_cols=50 Identities=20% Similarity=0.320 Sum_probs=32.9
Q ss_pred ceEEEECCCCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCeEEEEEEe
Q 010629 411 QEAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQT 463 (505)
Q Consensus 411 ~~~~ils~~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~Giygfv~~ 463 (505)
-.+.|.|.+|+++.+++|...+..- .+|+=||+++==-.-.+|.|=|..+
T Consensus 131 v~v~I~D~~G~vV~t~~lg~~~aG~---~~f~WDG~d~~G~~~~~G~Y~~~V~ 180 (230)
T PRK12633 131 VTVKVLDPSGAVVRTMELGDLKTGV---HTLQWDGNNDGGQPLADGKYSITVS 180 (230)
T ss_pred EEEEEEeCCCCEEEEEecCCCCCCc---eeEEECCCCCCCCcCCCcceEEEEE
Confidence 3478889999999999997666442 3677777765322234555555443
Done!