Query 010629
Match_columns 505
No_of_seqs 47 out of 49
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 10:53:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010629.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010629hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q7m_A Lipoprotein YFGL, BAMB; 94.2 0.92 3.2E-05 43.7 14.4 103 338-461 54-159 (376)
2 2zux_A YESW protein; beta-prop 92.5 0.35 1.2E-05 53.0 9.1 60 398-457 124-202 (591)
3 1w6s_A Methanol dehydrogenase 91.4 2.1 7.1E-05 46.3 13.7 91 337-439 62-165 (599)
4 2zuy_A YESX protein; beta-prop 91.0 0.48 1.6E-05 52.1 8.2 49 409-457 153-206 (620)
5 3q7m_A Lipoprotein YFGL, BAMB; 89.6 3.1 0.00011 39.9 11.9 93 338-461 105-204 (376)
6 2ad6_A Methanol dehydrogenase 89.1 3.8 0.00013 43.6 13.1 88 337-439 62-159 (571)
7 2bwr_A Psathyrella velutina le 88.7 2.1 7.1E-05 43.3 10.4 31 433-463 226-256 (401)
8 3no2_A Uncharacterized protein 88.1 18 0.00061 34.2 16.9 63 339-427 139-203 (276)
9 3hxj_A Pyrrolo-quinoline quino 87.9 6.5 0.00022 36.2 12.4 113 337-460 108-240 (330)
10 1flg_A Protein (quinoprotein e 85.8 11 0.00037 40.3 14.3 108 337-460 68-189 (582)
11 3hxj_A Pyrrolo-quinoline quino 84.4 16 0.00054 33.6 13.1 95 337-461 226-320 (330)
12 1kb0_A Quinohemoprotein alcoho 83.6 8.6 0.0003 41.6 12.5 89 337-439 77-173 (677)
13 3k6s_A Integrin alpha-X; cell 83.0 2 6.9E-05 49.9 7.6 79 385-464 437-541 (1095)
14 3v4v_A Integrin alpha-4; cell 82.7 1.7 5.9E-05 47.3 6.6 79 385-463 271-373 (597)
15 2zux_A YESW protein; beta-prop 82.7 8.7 0.0003 42.1 11.9 91 345-452 150-285 (591)
16 3no2_A Uncharacterized protein 81.4 15 0.00053 34.6 12.0 68 338-430 49-118 (276)
17 1w6s_A Methanol dehydrogenase 80.3 12 0.00041 40.4 12.1 56 412-468 279-344 (599)
18 2bwr_A Psathyrella velutina le 78.2 4.3 0.00015 40.9 7.3 70 393-463 286-366 (401)
19 3v4v_A Integrin alpha-4; cell 77.3 19 0.00064 39.2 12.4 79 385-463 216-312 (597)
20 3ije_A Integrin alpha-V; integ 76.1 10 0.00035 43.5 10.5 75 389-464 278-380 (967)
21 3ije_A Integrin alpha-V; integ 76.0 4.9 0.00017 46.2 7.8 78 385-463 220-321 (967)
22 1flg_A Protein (quinoprotein e 74.1 42 0.0014 35.7 14.0 57 411-468 291-357 (582)
23 3hx6_A Type 4 fimbrial biogene 73.7 10 0.00035 41.5 9.1 94 361-465 178-285 (570)
24 1kv9_A Type II quinohemoprotei 73.3 14 0.00049 39.7 10.3 56 412-468 271-335 (668)
25 1kv9_A Type II quinohemoprotei 72.4 37 0.0013 36.5 13.2 79 338-430 67-147 (668)
26 3odt_A Protein DOA1; ubiquitin 71.1 56 0.0019 29.1 12.2 54 405-463 239-295 (313)
27 1yiq_A Quinohemoprotein alcoho 70.5 38 0.0013 36.7 12.8 79 337-429 70-150 (689)
28 2zuy_A YESX protein; beta-prop 69.0 45 0.0015 36.8 12.8 91 346-452 155-289 (620)
29 1kb0_A Quinohemoprotein alcoho 65.7 55 0.0019 35.3 12.8 83 346-454 457-540 (677)
30 3e5z_A Putative gluconolactona 64.0 18 0.00061 33.2 7.5 55 403-462 230-284 (296)
31 2ad6_A Methanol dehydrogenase 63.9 66 0.0023 34.0 12.8 56 412-468 273-337 (571)
32 3vi3_A Integrin alpha-5; beta 63.5 13 0.00043 40.9 7.3 66 386-453 230-306 (632)
33 3vi3_A Integrin alpha-5; beta 59.7 9.7 0.00033 41.8 5.6 28 437-464 357-391 (632)
34 3fcs_A Integrin, alpha 2B; bet 58.4 16 0.00055 42.0 7.3 68 385-453 233-310 (959)
35 2be1_A Serine/threonine-protei 55.7 80 0.0027 31.8 11.2 29 337-369 11-39 (339)
36 3t3p_A Integrin alpha-IIB; int 52.7 7.8 0.00027 40.9 3.3 27 438-464 363-396 (457)
37 1yiq_A Quinohemoprotein alcoho 52.5 1.5E+02 0.005 32.1 13.3 57 412-469 276-341 (689)
38 3k6s_A Integrin alpha-X; cell 49.9 34 0.0012 39.8 8.2 77 385-461 500-595 (1095)
39 4a7k_A Aldos-2-ulose dehydrata 49.8 83 0.0028 36.2 11.0 110 342-455 280-415 (900)
40 3kci_A Probable E3 ubiquitin-p 47.4 51 0.0017 32.7 8.1 106 337-462 63-185 (389)
41 3fcs_A Integrin, alpha 2B; bet 42.4 14 0.00048 42.5 3.5 27 438-464 363-396 (959)
42 3dr2_A Exported gluconolactona 42.2 61 0.0021 30.1 7.4 52 405-461 252-303 (305)
43 3hx6_A Type 4 fimbrial biogene 39.9 1.3E+02 0.0045 32.8 10.4 40 209-248 222-270 (570)
44 4a7k_A Aldos-2-ulose dehydrata 39.4 64 0.0022 37.1 8.0 33 431-463 152-194 (900)
45 2be1_A Serine/threonine-protei 38.8 28 0.00094 35.2 4.6 19 47-65 21-39 (339)
46 3uc1_A DNA gyrase subunit A; D 38.1 1.2E+02 0.0041 30.2 9.1 105 336-462 53-174 (327)
47 2hz6_A Endoplasmic reticulum t 38.0 76 0.0026 31.0 7.6 84 338-446 132-216 (369)
48 3t3p_A Integrin alpha-IIB; int 37.9 16 0.00053 38.7 2.7 24 438-461 424-449 (457)
49 2mad_H Methylamine dehydrogena 36.5 3.2E+02 0.011 26.8 12.3 47 410-460 297-346 (373)
50 1zvt_A Topoisomerase IV subuni 34.3 75 0.0026 30.5 6.7 101 336-460 44-159 (256)
51 1suu_A DNA gyrase subunit A; t 32.5 66 0.0023 31.6 6.1 18 336-353 58-75 (312)
52 1wp5_A Topoisomerase IV; broke 32.4 1.2E+02 0.0041 30.1 8.0 17 336-352 50-66 (323)
53 3kci_A Probable E3 ubiquitin-p 31.7 3.3E+02 0.011 26.8 11.1 104 337-462 223-343 (389)
54 3no0_A DNA gyrase subunit A; D 31.6 1.8E+02 0.0062 28.0 9.0 50 410-460 80-142 (276)
55 2xzh_A Clathrin heavy chain 1; 31.4 1.1E+02 0.0038 31.7 7.6 96 345-460 151-286 (365)
56 4ggc_A P55CDC, cell division c 29.9 1.5E+02 0.005 26.5 7.5 54 405-460 38-94 (318)
57 3l6v_A GYRA, DNA gyrase subuni 29.9 98 0.0033 31.5 7.0 17 336-352 57-73 (370)
58 3qqz_A Putative uncharacterize 28.6 1.8E+02 0.0061 27.9 8.3 69 392-466 176-253 (255)
59 4d9s_A UVB-resistance protein 28.1 3.5E+02 0.012 26.8 10.7 102 337-461 131-250 (406)
60 4gga_A P55CDC, cell division c 27.8 1.4E+02 0.0048 28.8 7.5 54 405-460 118-174 (420)
61 4dh2_B Dockerin type 1; cellul 27.5 13 0.00046 30.5 0.1 18 231-248 4-21 (82)
62 3dsm_A Uncharacterized protein 27.3 3.9E+02 0.013 25.0 11.6 90 340-455 97-191 (328)
63 3vu4_A KMHSV2; beta-propeller 26.9 2.6E+02 0.009 26.4 9.2 50 408-464 78-128 (355)
64 3ul4_B Cellulosome enzyme, doc 26.0 14 0.00048 29.0 -0.0 15 233-247 4-18 (65)
65 3od9_A Putative exported prote 25.9 29 0.001 31.3 2.0 54 390-454 28-82 (135)
66 3of7_A Regulator of chromosome 25.4 1.5E+02 0.0051 30.3 7.5 101 339-460 216-337 (473)
67 2hz6_A Endoplasmic reticulum t 24.5 1E+02 0.0036 30.0 5.9 52 404-462 12-66 (369)
68 1daq_A Endoglucanase SS, CELS; 24.4 20 0.0007 28.3 0.6 17 230-246 2-18 (71)
69 4fl4_A Glycoside hydrolase fam 23.9 16 0.00056 30.6 -0.0 18 231-248 19-36 (88)
70 3mvd_K Regulator of chromosome 23.5 5.4E+02 0.018 25.3 11.2 67 337-425 85-151 (423)
71 2pm9_A Protein WEB1, protein t 22.9 4.6E+02 0.016 24.3 10.4 52 410-461 187-246 (416)
72 2dg1_A DRP35, lactonase; beta 22.6 1.9E+02 0.0065 26.5 7.1 52 403-455 245-300 (333)
73 1q7f_A NHL, brain tumor CG1071 21.9 4.2E+02 0.014 23.5 11.8 95 340-460 177-276 (286)
74 2oiz_A Aromatic amine dehydrog 21.7 5.3E+02 0.018 24.6 10.6 44 410-460 285-330 (361)
75 3i2n_A WD repeat-containing pr 21.5 2.8E+02 0.0095 25.0 7.8 58 402-461 30-96 (357)
76 1pjx_A Dfpase, DIISOPROPYLFLUO 20.8 3E+02 0.01 24.6 7.9 57 403-463 238-298 (314)
77 3iys_A Major capsid protein VP 20.6 2.3E+02 0.0078 29.0 7.4 67 199-279 14-85 (343)
78 3c12_A FLGD, flagellar protein 20.5 67 0.0023 28.0 3.2 51 411-464 41-91 (138)
No 1
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=94.16 E-value=0.92 Score=43.67 Aligned_cols=103 Identities=17% Similarity=0.259 Sum_probs=62.6
Q ss_pred cEEEE-ecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEEE
Q 010629 338 DVVFL-TNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVI 416 (505)
Q Consensus 338 D~vFL-~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~il 416 (505)
+.||+ +.+|.|.||+.. +++.+|+...+..-... . .....+..++.. ....++++..+..+..+
T Consensus 54 ~~v~~~~~~g~v~a~d~~----tG~~~W~~~~~~~~~~~----~-~~~~~~~~~~~~------~~~~v~v~~~~g~l~a~ 118 (376)
T 3q7m_A 54 NVVYAADRAGLVKALNAD----DGKEIWSVSLAEKDGWF----S-KEPALLSGGVTV------SGGHVYIGSEKAQVYAL 118 (376)
T ss_dssp TEEEEECTTSEEEEEETT----TCCEEEEEECCC---CC----S-CCCCCEEEEEEE------ETTEEEEEETTSEEEEE
T ss_pred CEEEEEcCCCeEEEEEcc----CCceeeeecCccccccc----c-ccCcccccCceE------eCCEEEEEcCCCEEEEE
Confidence 44555 457899999974 23899998765422100 0 000112112211 12334445555678999
Q ss_pred CC-CCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe-EEEEE
Q 010629 417 SP-GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG-VYGFV 461 (505)
Q Consensus 417 s~-~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~G-iygfv 461 (505)
|. +|+++-+.+++......|++.| | -|+|.|.+| +|+|-
T Consensus 119 d~~tG~~~W~~~~~~~~~~~p~~~~----~--~v~v~~~~g~l~~~d 159 (376)
T 3q7m_A 119 NTSDGTVAWQTKVAGEALSRPVVSD----G--LVLIHTSNGQLQALN 159 (376)
T ss_dssp ETTTCCEEEEEECSSCCCSCCEEET----T--EEEEECTTSEEEEEE
T ss_pred ECCCCCEEEEEeCCCceEcCCEEEC----C--EEEEEcCCCeEEEEE
Confidence 97 8999999999988777777652 2 466667776 88774
No 2
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=92.50 E-value=0.35 Score=52.97 Aligned_cols=60 Identities=23% Similarity=0.294 Sum_probs=47.6
Q ss_pred cCCccceEEEe--------------ecceEEEECCCCCEEEEEeCCCC-C----CcccEEeecCCCCcccEEEecCCeE
Q 010629 398 VHDNQQMILAG--------------GDQEAVVISPGGSILTSIDLPAP-P----THALVCEDFSNDGLTDVILMTSNGV 457 (505)
Q Consensus 398 ~~~~~~~IlA~--------------Ge~~~~ils~~G~vl~s~~Lp~p-P----~ap~Iv~DfngDG~nDiIVvT~~Gi 457 (505)
-++..++||+. |...+.+.+.+|++|-.+.|+.- . -.+++|.|||+||..+|+|.|.+|.
T Consensus 124 GDG~~EiVv~~dp~n~~d~s~~g~tg~~~l~aY~ldG~~LW~idlg~ni~aGa~yt~~~V~DlDGDGkaEIvv~TadGt 202 (591)
T 2zux_A 124 GDGQYELILKWDPSNSKDNSQDGYTGDVLIDAYKLDGTKLWRINLGKNIRAGAHYTQFMVYDLDGDGKAEVAMKTADGT 202 (591)
T ss_dssp SSSSCEEEEEEEETTCCCTTCCSCCCCCEEEEECTTSCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTC
T ss_pred CCCCEEEEEEECCcccccccccCcCCCcEEEEEECCCCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCc
Confidence 34556777765 34567788999999999999642 1 2479999999999999999999885
No 3
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=91.40 E-value=2.1 Score=46.33 Aligned_cols=91 Identities=8% Similarity=0.021 Sum_probs=54.4
Q ss_pred ccEEEEec--CceEEEecC--CCCCCcceeeeeeccccccccCCCCCC-CCCcCeeeeeeEEeecccCCc-cc-eEEEee
Q 010629 337 GDVVFLTN--RGEVTAYSP--GLHGHDAIWQWQLLTDATWSNLPSPSG-MTEASTVVPTLKAFSLRVHDN-QQ-MILAGG 409 (505)
Q Consensus 337 ~D~vFL~s--~G~vTs~~~--~g~g~~~~~~Wq~~T~a~W~~~~~~~g-~~e~~~~~PsL~af~lr~~~~-~~-~IlA~G 409 (505)
.+.||+.+ +|.|.|++. .| +.+|+..........+.... ..... |.+. | ..+. .. +++.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG-----~~lW~~~~~~~~~~~~~~~~~~~~~g---~av~--p--~~g~~~~rV~v~t~ 129 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPG-----TILWQDKPKQNPAARAVACCDLVNRG---LAYW--P--GDGKTPALILKTQL 129 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTT-----SEEEEECCCCCGGGGGGCSSCSCCCC---CEEE--C--CCSSSCCEEEEECT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCC-----cEEEEECCCCCccccccccccccccc---eEEE--e--cCCcceeEEEEEcC
Confidence 45677766 599999997 45 89999887654321100000 00000 2211 1 1111 12 555556
Q ss_pred cceEEEECC-CCCEEEEEeCCC-----CCCcccEEe
Q 010629 410 DQEAVVISP-GGSILTSIDLPA-----PPTHALVCE 439 (505)
Q Consensus 410 e~~~~ils~-~G~vl~s~~Lp~-----pP~ap~Iv~ 439 (505)
+..++-||. +|+++-+..++. ..+++|++.
T Consensus 130 dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~ 165 (599)
T 1w6s_A 130 DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV 165 (599)
T ss_dssp TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE
T ss_pred CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE
Confidence 778888996 999999999986 566777774
No 4
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=90.96 E-value=0.48 Score=52.12 Aligned_cols=49 Identities=20% Similarity=0.323 Sum_probs=40.4
Q ss_pred ecceEEEECCCCCEEEEEeCCCCC-----CcccEEeecCCCCcccEEEecCCeE
Q 010629 409 GDQEAVVISPGGSILTSIDLPAPP-----THALVCEDFSNDGLTDVILMTSNGV 457 (505)
Q Consensus 409 Ge~~~~ils~~G~vl~s~~Lp~pP-----~ap~Iv~DfngDG~nDiIVvT~~Gi 457 (505)
|...+.+.+.+|++|-.+.|+.-. -.+++|.|||+||..+|||.|.+|-
T Consensus 153 g~~~l~aY~ldG~~LW~idlg~Ni~aGahyt~~~V~DlDGDGkaEIvv~TadGt 206 (620)
T 2zuy_A 153 GEVLIDAYKLDGTFLWRINLGRNIRAGAHYTQFMVYDLDGDGKAEIAMKTADGT 206 (620)
T ss_dssp CCCEEEEECTTSCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTC
T ss_pred CCcEEEEEECCCCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCc
Confidence 345677888999999999985422 2488999999999999999999873
No 5
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=89.59 E-value=3.1 Score=39.92 Aligned_cols=93 Identities=16% Similarity=0.272 Sum_probs=58.1
Q ss_pred cEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEEEC
Q 010629 338 DVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVIS 417 (505)
Q Consensus 338 D~vFL~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~ils 417 (505)
.+++.+.+|.|.|++.. +++.+|+...+..- ..-|.+. ...+++++++..+..+|
T Consensus 105 ~v~v~~~~g~l~a~d~~----tG~~~W~~~~~~~~-------------~~~p~~~--------~~~v~v~~~~g~l~~~d 159 (376)
T 3q7m_A 105 HVYIGSEKAQVYALNTS----DGTVAWQTKVAGEA-------------LSRPVVS--------DGLVLIHTSNGQLQALN 159 (376)
T ss_dssp EEEEEETTSEEEEEETT----TCCEEEEEECSSCC-------------CSCCEEE--------TTEEEEECTTSEEEEEE
T ss_pred EEEEEcCCCEEEEEECC----CCCEEEEEeCCCce-------------EcCCEEE--------CCEEEEEcCCCeEEEEE
Confidence 45666678999999974 23899998664311 0112111 23455556667799999
Q ss_pred C-CCCEEEEEeCCCCCC-----cccEEeecCCCCcccEEEecCCe-EEEEE
Q 010629 418 P-GGSILTSIDLPAPPT-----HALVCEDFSNDGLTDVILMTSNG-VYGFV 461 (505)
Q Consensus 418 ~-~G~vl~s~~Lp~pP~-----ap~Iv~DfngDG~nDiIVvT~~G-iygfv 461 (505)
+ +|+++-...++.++. ..|++. +| -|++.|.+| +|+|-
T Consensus 160 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~----~~--~v~~g~~~g~l~~~d 204 (376)
T 3q7m_A 160 EADGAVKWTVNLDMPSLSLRGESAPTTA----FG--AAVVGGDNGRVSAVL 204 (376)
T ss_dssp TTTCCEEEEEECCC-----CCCCCCEEE----TT--EEEECCTTTEEEEEE
T ss_pred CCCCcEEEEEeCCCCceeecCCCCcEEE----CC--EEEEEcCCCEEEEEE
Confidence 6 999999999987763 444444 22 366666665 77773
No 6
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=89.05 E-value=3.8 Score=43.57 Aligned_cols=88 Identities=15% Similarity=0.136 Sum_probs=52.7
Q ss_pred ccEEEEecC--ceEEEecC--CCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecce
Q 010629 337 GDVVFLTNR--GEVTAYSP--GLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQE 412 (505)
Q Consensus 337 ~D~vFL~s~--G~vTs~~~--~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~ 412 (505)
.+.||+.+. |.|.|++. .| +.+|+...+......+.... ..+-.++.. ....++++..+..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG-----~~~W~~~~~~~~~~~~~~~~----~~~~~~~~~------~~~~v~v~~~dg~ 126 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPG-----KIVWQHKPKQDASTKAVMCC----DVVDRGLAY------GAGQIVKKQANGH 126 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTT-----SEEEEECCCCCGGGGGGCTT----CSCCCCCEE------ETTEEEEECTTSE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCc-----cEEEEEcCCCCccccccccc----cccccccEE------ECCEEEEEeCCCE
Confidence 456777664 99999997 45 89999876643211100000 000011111 1234455556678
Q ss_pred EEEECC-CCCEEEEEeCCC-----CCCcccEEe
Q 010629 413 AVVISP-GGSILTSIDLPA-----PPTHALVCE 439 (505)
Q Consensus 413 ~~ils~-~G~vl~s~~Lp~-----pP~ap~Iv~ 439 (505)
+..||. +|+++-+.+++. ...++|++.
T Consensus 127 l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~ 159 (571)
T 2ad6_A 127 LLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA 159 (571)
T ss_dssp EEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE
T ss_pred EEEEECCCCCEEEEecCCCCCccceeccCCEEE
Confidence 999997 999999999976 445666654
No 7
>2bwr_A Psathyrella velutina lectin; N-acetyl-glucosamine; HET: MES; 1.5A {Psathyrella velutina} PDB: 2bwm_A* 2c25_A* 2c4d_A*
Probab=88.75 E-value=2.1 Score=43.25 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=26.0
Q ss_pred CcccEEeecCCCCcccEEEecCCeEEEEEEe
Q 010629 433 THALVCEDFSNDGLTDVILMTSNGVYGFVQT 463 (505)
Q Consensus 433 ~ap~Iv~DfngDG~nDiIVvT~~Giygfv~~ 463 (505)
..++.+.||||||..||++...++++-|...
T Consensus 226 ~~~~~~~D~dgDG~~Dlv~~~~~~~~~~~n~ 256 (401)
T 2bwr_A 226 AHPRVVADLTGDRKADILGFGVAGVYTSLNN 256 (401)
T ss_dssp TCCEEEECSSSSSCCEEEEECSSSEEEECBC
T ss_pred CcceeeeEcCCCCCccEEEECCCcEEEEEeC
Confidence 4567999999999999999888888777543
No 8
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=88.14 E-value=18 Score=34.20 Aligned_cols=63 Identities=22% Similarity=0.220 Sum_probs=40.8
Q ss_pred EEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeec-ceEEEEC
Q 010629 339 VVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGD-QEAVVIS 417 (505)
Q Consensus 339 ~vFL~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge-~~~~ils 417 (505)
+|....+|.|.||++.| ...|+..++. | |.-.+ . ......+++... ..+..+|
T Consensus 139 lv~~~~~~~v~~~d~~G-----~~~w~~~~~~-~----------------~~~~~--~--~~~g~~~v~~~~~~~v~~~d 192 (276)
T 3no2_A 139 LVPLFATSEVREIAPNG-----QLLNSVKLSG-T----------------PFSSA--F--LDNGDCLVACGDAHCFVQLN 192 (276)
T ss_dssp EEEETTTTEEEEECTTS-----CEEEEEECSS-C----------------CCEEE--E--CTTSCEEEECBTTSEEEEEC
T ss_pred EEEecCCCEEEEECCCC-----CEEEEEECCC-C----------------cccee--E--cCCCCEEEEeCCCCeEEEEe
Confidence 44556789999999976 8999987641 1 11111 1 122344554444 4688999
Q ss_pred CC-CCEEEEEe
Q 010629 418 PG-GSILTSID 427 (505)
Q Consensus 418 ~~-G~vl~s~~ 427 (505)
++ |+++-++.
T Consensus 193 ~~tG~~~w~~~ 203 (276)
T 3no2_A 193 LESNRIVRRVN 203 (276)
T ss_dssp TTTCCEEEEEE
T ss_pred CcCCcEEEEec
Confidence 85 99998885
No 9
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=87.91 E-value=6.5 Score=36.21 Aligned_cols=113 Identities=15% Similarity=0.184 Sum_probs=58.0
Q ss_pred ccEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCC--CCCC-----CCcC--eeee---eeEEeeccc------
Q 010629 337 GDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPS--PSGM-----TEAS--TVVP---TLKAFSLRV------ 398 (505)
Q Consensus 337 ~D~vFL~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~--~~g~-----~e~~--~~~P---sL~af~lr~------ 398 (505)
+.+++-+.+|.|.+|++.| ...|+...+......+. ..|. .... .+-| .+..+++..
T Consensus 108 ~~l~v~t~~~~l~~~d~~g-----~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~~~ 182 (330)
T 3hxj_A 108 DILYVTSMDGHLYAINTDG-----TEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFKTNDAITSAA 182 (330)
T ss_dssp TEEEEECTTSEEEEECTTS-----CEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTTSCEEEEEECSSCCCSCC
T ss_pred CEEEEEecCCEEEEEcCCC-----CEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCCCCEeEEEecCCCceeee
Confidence 3466666689999999865 78898776533211111 0111 0000 0001 011111110
Q ss_pred -CCccceEEEeecceEEEECCCCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecC-CeEEEE
Q 010629 399 -HDNQQMILAGGDQEAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTS-NGVYGF 460 (505)
Q Consensus 399 -~~~~~~IlA~Ge~~~~ils~~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~-~Giygf 460 (505)
-+.+..|++.. ..+..+|++|+.+-...++...+..+.+ +.|| .|.|.|. +|+|.|
T Consensus 183 ~~d~~g~l~v~t-~~l~~~d~~g~~~~~~~~~~~~~~~~~~---~~~g--~l~v~t~~~gl~~~ 240 (330)
T 3hxj_A 183 SIGKDGTIYFGS-DKVYAINPDGTEKWNFYAGYWTVTRPAI---SEDG--TIYVTSLDGHLYAI 240 (330)
T ss_dssp EECTTCCEEEES-SSEEEECTTSCEEEEECCSSCCCSCCEE---CTTS--CEEEEETTTEEEEE
T ss_pred EEcCCCEEEEEe-CEEEEECCCCcEEEEEccCCcceeceEE---CCCC--eEEEEcCCCeEEEE
Confidence 01122333333 6777788888888777776554444433 2343 5777776 468877
No 10
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=85.81 E-value=11 Score=40.25 Aligned_cols=108 Identities=14% Similarity=0.123 Sum_probs=62.2
Q ss_pred ccEEEEecC-ceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEE
Q 010629 337 GDVVFLTNR-GEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVV 415 (505)
Q Consensus 337 ~D~vFL~s~-G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~i 415 (505)
.+.||+.+. +.|.|++.. .|+.+|+..+...-... + .-+.+-.++.. ....+++++.+..++-
T Consensus 68 ~g~vyv~~~~~~v~AlD~~----tG~~~W~~~~~~~~~~~--~----~~~~~~~g~a~------~~~~v~~~t~dg~l~A 131 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAK----TGKRLWTYNHRLPDDIR--P----CCDVVNRGAAI------YGDKVFFGTLDASVVA 131 (582)
T ss_dssp TTEEEEEETTTEEEEEESS----SCCEEEEEECCCCTTCC--C----SSCSCCCCCEE------ETTEEEEEETTTEEEE
T ss_pred CCEEEEEcCCCCEEEEECC----CCcEEEEEcCCCCcccc--c----ccccCCCccEE------ECCEEEEEeCCCEEEE
Confidence 456666665 679999973 34899998776432111 0 00000111111 1234555566778889
Q ss_pred ECC-CCCEEEEEeCCCC-----CCcccEEeecCCCCcccEEEecC------Ce-EEEE
Q 010629 416 ISP-GGSILTSIDLPAP-----PTHALVCEDFSNDGLTDVILMTS------NG-VYGF 460 (505)
Q Consensus 416 ls~-~G~vl~s~~Lp~p-----P~ap~Iv~DfngDG~nDiIVvT~------~G-iygf 460 (505)
||. +|+++-+..++.+ .+++|++.+=+.+|..-|+|.+. +| ||+|
T Consensus 132 lD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~al 189 (582)
T 1flg_A 132 LNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFAR 189 (582)
T ss_dssp EESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEE
T ss_pred EECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEE
Confidence 997 9999999998762 44555555434455543444442 33 6666
No 11
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=84.41 E-value=16 Score=33.56 Aligned_cols=95 Identities=17% Similarity=0.228 Sum_probs=61.2
Q ss_pred ccEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEEE
Q 010629 337 GDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVI 416 (505)
Q Consensus 337 ~D~vFL~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~il 416 (505)
+.+++-+.+|-|.+|++.+ ...|+..+.... ..++.. .....+.+++.+..+..+
T Consensus 226 g~l~v~t~~~gl~~~~~~g-----~~~~~~~~~~~~---------------~~~~~~-----~~~g~l~v~t~~ggl~~~ 280 (330)
T 3hxj_A 226 GTIYVTSLDGHLYAINPDG-----TEKWRFKTGKRI---------------ESSPVI-----GNTDTIYFGSYDGHLYAI 280 (330)
T ss_dssp SCEEEEETTTEEEEECTTS-----CEEEEEECSSCC---------------CSCCEE-----CTTSCEEEECTTCEEEEE
T ss_pred CeEEEEcCCCeEEEECCCC-----CEeEEeeCCCCc---------------cccceE-----cCCCeEEEecCCCCEEEE
Confidence 3566667789999998766 677886543211 111111 222344444444478899
Q ss_pred CCCCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCeEEEEE
Q 010629 417 SPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFV 461 (505)
Q Consensus 417 s~~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~Giygfv 461 (505)
|++|+++....++...+..+++ | .|| -|.|.|.+|+.-+.
T Consensus 281 d~~g~~~~~~~~~~~~~~~~~~-d--~~g--~l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 281 NPDGTEKWNFETGSWIIATPVI-D--ENG--TIYFGTRNGKFYAL 320 (330)
T ss_dssp CTTSCEEEEEECSSCCCSCCEE-C--TTC--CEEEECTTSCEEEE
T ss_pred CCCCcEEEEEEcCCccccceEE-c--CCC--EEEEEcCCCeEEEE
Confidence 9999999999998876665554 3 233 49999999965553
No 12
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=83.56 E-value=8.6 Score=41.62 Aligned_cols=89 Identities=10% Similarity=0.018 Sum_probs=52.6
Q ss_pred ccEEEEec-CceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEE
Q 010629 337 GDVVFLTN-RGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVV 415 (505)
Q Consensus 337 ~D~vFL~s-~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~i 415 (505)
.+.||+.+ +|.|.|++.. .|+.+|+......-...+... .+.+..++.. ....+++++.+..+..
T Consensus 77 ~g~vyv~~~~~~v~AlD~~----tG~~~W~~~~~~~~~~~~~~~----~~~~~~~~a~------~~~~v~v~~~dg~l~a 142 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTR----TGNRIWTYDPQIDRSTGFKGC----CDVVNRGVAL------WKGKVYVGAWDGRLIA 142 (677)
T ss_dssp TTEEEEECGGGCEEEEETT----TTEEEEEECCCCCGGGGGGSS----SCSCCCCCEE------ETTEEEEECTTSEEEE
T ss_pred CCEEEEECCCCeEEEEECC----CCcEEEEEcCCCCcccccccc----ccCCCCCceE------ECCEEEEEcCCCEEEE
Confidence 34565554 5999999964 349999988764322110000 0011111111 1234455566778999
Q ss_pred ECC-CCCEEEEEeCC------CCCCcccEEe
Q 010629 416 ISP-GGSILTSIDLP------APPTHALVCE 439 (505)
Q Consensus 416 ls~-~G~vl~s~~Lp------~pP~ap~Iv~ 439 (505)
||. +|+++-++.++ ...+.+|++.
T Consensus 143 lD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~ 173 (677)
T 1kb0_A 143 LDAATGKEVWHQNTFEGQKGSLTITGAPRVF 173 (677)
T ss_dssp EETTTCCEEEEEETTTTCCSSCBCCSCCEEE
T ss_pred EECCCCCEEeeecCCcCcCcCcccccCcEEE
Confidence 997 99999999997 3455566654
No 13
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=82.95 E-value=2 Score=49.92 Aligned_cols=79 Identities=22% Similarity=0.230 Sum_probs=46.8
Q ss_pred CeeeeeeEEeecccCCccceEEEeecc---------eEEEE--CCC-CCEEEEEeCCCCC--------CcccEEeecCCC
Q 010629 385 STVVPTLKAFSLRVHDNQQMILAGGDQ---------EAVVI--SPG-GSILTSIDLPAPP--------THALVCEDFSND 444 (505)
Q Consensus 385 ~~~~PsL~af~lr~~~~~~~IlA~Ge~---------~~~il--s~~-G~vl~s~~Lp~pP--------~ap~Iv~DfngD 444 (505)
..+=+++++.-+..++...+ |++|.. .+.|. +.+ |.......|...+ .+-.+++|+|+|
T Consensus 437 s~fG~sva~~DvngDG~~Dl-lvvGAP~~~~~~~~G~Vyvy~~~~~~~~~~~~~~l~g~~~~~~~~FG~sva~~gD~NgD 515 (1095)
T 3k6s_A 437 SYFGASLCSVDVDSDGSTDL-VLIGAPHYYEQTRGGQVSVCPLPRGWRRWWCDAVLYGEQGHPWGRFGAALTVLGDVNGD 515 (1095)
T ss_dssp SCTTSCEEEECSSSSSSCCE-EEEECSSCCSSCCCBCEEEEECCSSTTCCCSCSSCCCCCSCSSCCBTSCEEEEECSSSS
T ss_pred CcCCceEEEEEeCCCCCccE-EEECCccccCcCCCCEEEEEEeCCCCcceeeeEEeecccCCccccCccceEeecccCCC
Confidence 56668888877777777775 344421 23333 233 2232223343332 222346899999
Q ss_pred CcccEEEec-----CCe-EEEEEEec
Q 010629 445 GLTDVILMT-----SNG-VYGFVQTR 464 (505)
Q Consensus 445 G~nDiIVvT-----~~G-iygfv~~~ 464 (505)
|.+||+|.. ..| +|.|....
T Consensus 516 G~~Dl~VGAP~~~~~~G~vyi~~g~~ 541 (1095)
T 3k6s_A 516 KLTDVVIGAPGEEENRGAVYLFHGVL 541 (1095)
T ss_dssp SCCEEEEECTTTTTSCCBEEEEEBCS
T ss_pred CCcCEEEeCCcCCCCCCEEEEecCCC
Confidence 999999865 234 88886654
No 14
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A*
Probab=82.71 E-value=1.7 Score=47.34 Aligned_cols=79 Identities=19% Similarity=0.289 Sum_probs=44.1
Q ss_pred CeeeeeeEEeecccCCccceEEEee-------cceEEEE--CCCCCE--EEEEeCCCCCC-----ccc--EEeecCCCCc
Q 010629 385 STVVPTLKAFSLRVHDNQQMILAGG-------DQEAVVI--SPGGSI--LTSIDLPAPPT-----HAL--VCEDFSNDGL 446 (505)
Q Consensus 385 ~~~~PsL~af~lr~~~~~~~IlA~G-------e~~~~il--s~~G~v--l~s~~Lp~pP~-----ap~--Iv~DfngDG~ 446 (505)
.++-.++++.-+..++...+++.+- +-.+.|+ +.+|.. .....|+..+. ... .++|+|+||.
T Consensus 271 ~~fG~sva~~D~ngDG~~DlvVGap~~~~~~~~G~v~vy~~~g~g~~~~~~~~~l~g~~~~~~~FG~sva~~gDlngDG~ 350 (597)
T 3v4v_A 271 SYFGASVCAVDLNADGFSDLLVGAPMQSTIREEGRVFVYINSGSGAVMNAMETNLVGSDKYAARFGESIVNLGDIDNDGF 350 (597)
T ss_dssp CCTTSEEEEECTTCSSSCEEEEEETTCCSSSCCCEEEEEEECSSSSCEECCSSCBCTTCCTTCCTTSCEECCCCSSCSSS
T ss_pred CCCcceEEEEeeCCCCCceEEEEcccccCCCcCCeEEEEEECCCCcceeccceEEeCCcccccccccccccccccCCCCC
Confidence 3444567766566666666554431 1123333 345642 22334554331 112 3689999999
Q ss_pred ccEEEecC-----Ce-EEEEEEe
Q 010629 447 TDVILMTS-----NG-VYGFVQT 463 (505)
Q Consensus 447 nDiIVvT~-----~G-iygfv~~ 463 (505)
+||+|-.- .| +|.|...
T Consensus 351 ~Dl~VGap~~~~~~G~vyv~~g~ 373 (597)
T 3v4v_A 351 EDVAIGAPQEDDLQGAIYIYNGR 373 (597)
T ss_dssp CCEEEEETTHHHHTBEEEEECEE
T ss_pred cceEEecccccCCCCcEEEecCC
Confidence 99999763 24 8877544
No 15
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=82.69 E-value=8.7 Score=42.15 Aligned_cols=91 Identities=12% Similarity=0.179 Sum_probs=61.3
Q ss_pred CceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEe----------------
Q 010629 345 RGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAG---------------- 408 (505)
Q Consensus 345 ~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~---------------- 408 (505)
...|++|+-.| +.+||+..+... .+| ....++.++-|.-++..++|+.+
T Consensus 150 ~~~l~aY~ldG-----~~LW~idlg~ni-----~aG-----a~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~ 214 (591)
T 2zux_A 150 DVLIDAYKLDG-----TKLWRINLGKNI-----RAG-----AHYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNAN 214 (591)
T ss_dssp CCEEEEECTTS-----CEEEEEECCTTS-----CCS-----TTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTT
T ss_pred CcEEEEEECCC-----CEEEEEcCCCCc-----ccc-----cccCceeEEEcCCCCcceEEEEccCCcccCCceEecccc
Confidence 35799999865 999998876421 111 11234566666666666665553
Q ss_pred ------------ecceEEEECC-CCCEEEEEeCCCCCCc----------------ccEEeecCCCCcccEEEe
Q 010629 409 ------------GDQEAVVISP-GGSILTSIDLPAPPTH----------------ALVCEDFSNDGLTDVILM 452 (505)
Q Consensus 409 ------------Ge~~~~ils~-~G~vl~s~~Lp~pP~a----------------p~Iv~DfngDG~nDiIVv 452 (505)
|...+.|++- +|+.+.+++++ ||.. .+-+.+|+|| .-.||+.
T Consensus 215 ~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~-p~rg~~~~WGD~ygnR~drf~~~vayLDG~-~Ps~v~~ 285 (591)
T 2zux_A 215 ADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFE-PARGNVSDWGDSYGNRVDRFLAGIAYLDGQ-RPSLIMT 285 (591)
T ss_dssp CCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECS-SCCCCGGGGTCSSSSGGGCEEEEEECTTSS-SCEEEEE
T ss_pred cccccccceeecCCcEEEEEeCCCCCEEecccCC-CCCCcccccccccccccccceeeEEECCCC-CceEEEe
Confidence 4556899995 99999999985 2222 4678999999 6666654
No 16
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=81.38 E-value=15 Score=34.62 Aligned_cols=68 Identities=12% Similarity=0.252 Sum_probs=43.0
Q ss_pred cEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEE-ee-cceEEE
Q 010629 338 DVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILA-GG-DQEAVV 415 (505)
Q Consensus 338 D~vFL~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA-~G-e~~~~i 415 (505)
.+++ +.++.|.+|++.| ..+|+..++.. .+ +.....-.+ ..++++ .| ...+..
T Consensus 49 ~ilv-s~~~~V~~~d~~G-----~~~W~~~~~~~----------~~-------~~~~~~~~d--G~~lv~~~~~~~~v~~ 103 (276)
T 3no2_A 49 EILF-SYSKGAKMITRDG-----RELWNIAAPAG----------CE-------MQTARILPD--GNALVAWCGHPSTILE 103 (276)
T ss_dssp CEEE-ECBSEEEEECTTS-----CEEEEEECCTT----------CE-------EEEEEECTT--SCEEEEEESTTEEEEE
T ss_pred CEEE-eCCCCEEEECCCC-----CEEEEEcCCCC----------cc-------ccccEECCC--CCEEEEecCCCCEEEE
Confidence 4555 7788899999976 89999876310 01 111111122 233444 44 567778
Q ss_pred ECCCCCEEEEEeCCC
Q 010629 416 ISPGGSILTSIDLPA 430 (505)
Q Consensus 416 ls~~G~vl~s~~Lp~ 430 (505)
++++|+++.++.+..
T Consensus 104 vd~~Gk~l~~~~~~~ 118 (276)
T 3no2_A 104 VNMKGEVLSKTEFET 118 (276)
T ss_dssp ECTTSCEEEEEEECC
T ss_pred EeCCCCEEEEEeccC
Confidence 899999999998853
No 17
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=80.29 E-value=12 Score=40.36 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=36.7
Q ss_pred eEEEECC-CCCEEEEEeCCCC------CCcccEEeecC-CCCcc-cEEE-ecCCeEEEEEEeccCCh
Q 010629 412 EAVVISP-GGSILTSIDLPAP------PTHALVCEDFS-NDGLT-DVIL-MTSNGVYGFVQTRQPGA 468 (505)
Q Consensus 412 ~~~ils~-~G~vl~s~~Lp~p------P~ap~Iv~Dfn-gDG~n-DiIV-vT~~Giygfv~~~~~g~ 468 (505)
+++-||+ +|+++-..++... ..+.|++.|+. .||.. ++++ .+++|. .|++-+..|.
T Consensus 279 sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~ 344 (599)
T 1w6s_A 279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGI-VYTLDRTDGA 344 (599)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSE-EEEEETTTCC
T ss_pred eEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcE-EEEEECCCCC
Confidence 6888897 9999999988643 34566777765 55632 4444 678883 3555555553
No 18
>2bwr_A Psathyrella velutina lectin; N-acetyl-glucosamine; HET: MES; 1.5A {Psathyrella velutina} PDB: 2bwm_A* 2c25_A* 2c4d_A*
Probab=78.19 E-value=4.3 Score=40.94 Aligned_cols=70 Identities=20% Similarity=0.218 Sum_probs=42.9
Q ss_pred EeecccCCccceEEEeecceEEEEC-C-CCCEEEEEeC----CC-----CCCcccEEeecCCCCcccEEEecCCeEEEEE
Q 010629 393 AFSLRVHDNQQMILAGGDQEAVVIS-P-GGSILTSIDL----PA-----PPTHALVCEDFSNDGLTDVILMTSNGVYGFV 461 (505)
Q Consensus 393 af~lr~~~~~~~IlA~Ge~~~~ils-~-~G~vl~s~~L----p~-----pP~ap~Iv~DfngDG~nDiIVvT~~Giygfv 461 (505)
.--+..++...+|+ .++..+.+.- . +|.......+ +. .....+.+.||||||..|||+...+.++-|.
T Consensus 286 ~~D~dgDG~~Dlv~-~~~~~~~~~~n~g~g~f~~~~~~~~~~~~~~g~~~~~~~~~~~D~dgDG~~Dlv~~~~~~~~~~~ 364 (401)
T 2bwr_A 286 VSSLTNKKVGDIIG-FGDAGVYVALNNGNGTFGPVKRVIDNFGYNQGWRVDKHPRFVVDLTGDGCADIVGFGENSVWACM 364 (401)
T ss_dssp EECCSTTCSCEEEE-ECSSSEEEECBCSSSCBCCCEEEESCSSGGGTCCTTTCCEEEECSSSSSSCEEEEECSSCEEEEE
T ss_pred eEeCCCCCCccEEE-EcCCeEEEEecCCCccccCcceeccccccCCCcccccceeeeEccCCCCCccEEEECCCcEEEEE
Confidence 33444556667655 4555566663 2 4443222211 11 1235688899999999999998877788875
Q ss_pred Ee
Q 010629 462 QT 463 (505)
Q Consensus 462 ~~ 463 (505)
-.
T Consensus 365 n~ 366 (401)
T 2bwr_A 365 NK 366 (401)
T ss_dssp EC
T ss_pred eC
Confidence 43
No 19
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A*
Probab=77.29 E-value=19 Score=39.24 Aligned_cols=79 Identities=14% Similarity=0.246 Sum_probs=46.2
Q ss_pred CeeeeeeEEeecccCCccceEEEee----cceEEEEC-CCCCEEEEEeCCCCCC-----cccEEeecCCCCcccEEEec-
Q 010629 385 STVVPTLKAFSLRVHDNQQMILAGG----DQEAVVIS-PGGSILTSIDLPAPPT-----HALVCEDFSNDGLTDVILMT- 453 (505)
Q Consensus 385 ~~~~PsL~af~lr~~~~~~~IlA~G----e~~~~ils-~~G~vl~s~~Lp~pP~-----ap~Iv~DfngDG~nDiIVvT- 453 (505)
..+=.++++--+..++...+|+.+- .-.+.|+. .+|.......|..... ..+.++|||+||.+||+|-.
T Consensus 216 sy~GySva~gD~ngDG~~DlvvGAP~~~~~G~V~v~~~~~~~~~~~~~l~G~~~g~~fG~sva~~D~ngDG~~DlvVGap 295 (597)
T 3v4v_A 216 SYLGYSVGAGHFRSQHTTEVVGGAPQHEQIGKAYIFSIDEKELNILHEMKGKKLGSYFGASVCAVDLNADGFSDLLVGAP 295 (597)
T ss_dssp CCBTSSEEEECSSCTTSCEEEEEETTGGGTCEEEEEEECSSSEEEEEEEECSSTTCCTTSEEEEECTTCSSSCEEEEEET
T ss_pred CcCccEEEEEEECCCCCeEEEEecccccCCceEEEEecCCCceeEEEEecccccCCCCcceEEEEeeCCCCCceEEEEcc
Confidence 4455677665555555555443321 11345554 3566655555654322 24567899999999998863
Q ss_pred ------CCe-EEEEEEe
Q 010629 454 ------SNG-VYGFVQT 463 (505)
Q Consensus 454 ------~~G-iygfv~~ 463 (505)
..| +|.|...
T Consensus 296 ~~~~~~~~G~v~vy~~~ 312 (597)
T 3v4v_A 296 MQSTIREEGRVFVYINS 312 (597)
T ss_dssp TCCSSSCCCEEEEEEEC
T ss_pred cccCCCcCCeEEEEEEC
Confidence 345 8888544
No 20
>3ije_A Integrin alpha-V; integrin structure, activation, EGF domains, FLIM, cell SIGN cell adhesion, cleavage on PAIR of basic residues; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 4g1e_A* 4g1m_A* 1jv2_A* 1l5g_A* 1m1x_A* 1u8c_A*
Probab=76.13 E-value=10 Score=43.54 Aligned_cols=75 Identities=17% Similarity=0.267 Sum_probs=42.4
Q ss_pred eeeEEeecccCCccceEEEe------------e-cceEEEE-C-CCCCEEEEEeCCCCCC----ccc--EEeecCCCCcc
Q 010629 389 PTLKAFSLRVHDNQQMILAG------------G-DQEAVVI-S-PGGSILTSIDLPAPPT----HAL--VCEDFSNDGLT 447 (505)
Q Consensus 389 PsL~af~lr~~~~~~~IlA~------------G-e~~~~il-s-~~G~vl~s~~Lp~pP~----ap~--Iv~DfngDG~n 447 (505)
-++++.-+..++..++++++ . .-.+.|. . .+|... ...|+..+. .-. .++||||||.+
T Consensus 278 ~sva~~D~ngDG~~DLvVgaP~~~~~~~~g~~~~~G~v~vy~~~g~g~f~-~~~l~g~~~~~~fG~sva~~gDlngDG~~ 356 (967)
T 3ije_A 278 FSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQRASGDFQ-TTKLNGFEVFARFGSAIAPLGDLDQDGFN 356 (967)
T ss_dssp SEEEEECTTSSSCCEEEEEETTCEEECTTSCEEECCEEEEEECCSSSCCE-EEEEECSSTTSCTTSEEEEEESTTCSSSC
T ss_pred EEEEEEecCCCCCceEEEEcccccccccccccccCCcEEEEEECCCCcee-eeeccCccccCCCcceEEeeeccCCCCCc
Confidence 35666566666666765552 0 1223333 2 244433 445544332 112 36899999999
Q ss_pred cEEEecC------Ce-EEEEEEec
Q 010629 448 DVILMTS------NG-VYGFVQTR 464 (505)
Q Consensus 448 DiIVvT~------~G-iygfv~~~ 464 (505)
||+|..- .| +|.|.-..
T Consensus 357 Dl~VGap~~~~~~~G~vyiy~g~~ 380 (967)
T 3ije_A 357 DIAIAAPYGGEDKKGIVYIFNGRS 380 (967)
T ss_dssp EEEEEETTCSSSSCCEEEEEEEET
T ss_pred ceEEeccccCCCCCceEEEEecCC
Confidence 9999763 34 88776544
No 21
>3ije_A Integrin alpha-V; integrin structure, activation, EGF domains, FLIM, cell SIGN cell adhesion, cleavage on PAIR of basic residues; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 4g1e_A* 4g1m_A* 1jv2_A* 1l5g_A* 1m1x_A* 1u8c_A*
Probab=76.03 E-value=4.9 Score=46.18 Aligned_cols=78 Identities=10% Similarity=0.086 Sum_probs=43.5
Q ss_pred CeeeeeeEEeecccCCccceEEEe----ec-ceEEEECCCCCEEEEEeCCCCCC-----cccEEeecCCCCcccEEEec-
Q 010629 385 STVVPTLKAFSLRVHDNQQMILAG----GD-QEAVVISPGGSILTSIDLPAPPT-----HALVCEDFSNDGLTDVILMT- 453 (505)
Q Consensus 385 ~~~~PsL~af~lr~~~~~~~IlA~----Ge-~~~~ils~~G~vl~s~~Lp~pP~-----ap~Iv~DfngDG~nDiIVvT- 453 (505)
.++=+++++--+..++...+|+.+ +. -.+.|...+| ......+..... ..+.++||||||..||+|..
T Consensus 220 sy~G~sVa~gD~ngDG~~DlvvGaP~~~~~~G~V~i~~~~~-~~~~~~~~g~~~gs~fG~sva~~D~ngDG~~DLvVgaP 298 (967)
T 3ije_A 220 SYLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKN-MSSLYNFTGEQMAAYFGFSVAATDINGDDYADVFIGAP 298 (967)
T ss_dssp CCBTSEEEEECCSSSSSCEEEEEETTHHHHTCEEEEECSSS-SCEEEEEECSSTTSCTTSEEEEECTTSSSCCEEEEEET
T ss_pred CccceEEEEEEECCCCCeEEEEEecccCCCCcEEEEEeCCC-ceeeeEecccccCCceeEEEEEEecCCCCCceEEEEcc
Confidence 445567776555555556655431 12 2344555444 222222322211 35568999999999998873
Q ss_pred ------------CCe-EEEEEEe
Q 010629 454 ------------SNG-VYGFVQT 463 (505)
Q Consensus 454 ------------~~G-iygfv~~ 463 (505)
..| +|-|...
T Consensus 299 ~~~~~~~~g~~~~~G~v~vy~~~ 321 (967)
T 3ije_A 299 LFMDRGSDGKLQEVGQVSVSLQR 321 (967)
T ss_dssp TCEEECTTSCEEECCEEEEEECC
T ss_pred cccccccccccccCCcEEEEEEC
Confidence 234 8888664
No 22
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=74.07 E-value=42 Score=35.68 Aligned_cols=57 Identities=23% Similarity=0.329 Sum_probs=36.5
Q ss_pred ceEEEECC-CCCEEEEEeCCCC------CCcccEEeecC-CCCcc-c-EEEecCCeEEEEEEeccCCh
Q 010629 411 QEAVVISP-GGSILTSIDLPAP------PTHALVCEDFS-NDGLT-D-VILMTSNGVYGFVQTRQPGA 468 (505)
Q Consensus 411 ~~~~ils~-~G~vl~s~~Lp~p------P~ap~Iv~Dfn-gDG~n-D-iIVvT~~Giygfv~~~~~g~ 468 (505)
.+++-||+ +|+++-.+++... .+..|++.|.+ -||.. + |++.+++| +-|++-+..|.
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G-~l~~lD~~tG~ 357 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNG-FFYVVDRSNGK 357 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTS-EEEEEETTTCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCc-eEEEEECCCCC
Confidence 46888897 9999999988643 24566777764 45642 4 45567777 23444444443
No 23
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=73.68 E-value=10 Score=41.46 Aligned_cols=94 Identities=17% Similarity=0.271 Sum_probs=63.4
Q ss_pred eeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEee------cceEEEECC-CCCEEEEEeCCCCC-
Q 010629 361 IWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGG------DQEAVVISP-GGSILTSIDLPAPP- 432 (505)
Q Consensus 361 ~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~G------e~~~~ils~-~G~vl~s~~Lp~pP- 432 (505)
.++|.+.+. ..... +. ..-.|.+..+. ++.--+|++.| ...+-|+|. +|.++..+.++...
T Consensus 178 ~~LWe~~~~-~~~~L------G~-t~s~P~I~~~~---~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~~~~~~ 246 (570)
T 3hx6_A 178 KLLWEIGVD-QEPDL------GY-SFPKPTVARLH---NGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEVTGRTG 246 (570)
T ss_dssp EEEEEEETT-TCTTC------CB-CCSCCEEEECT---TSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEECCSTT
T ss_pred ceeEEECCC-Ccccc------Cc-cccCCEEEEec---CCCEEEEEccccCCCCCccEEEEEECCCCceEEEEecCCCCc
Confidence 889998832 12111 22 33456666543 34444566665 346778896 99999999987532
Q ss_pred ----CcccEEeecCCCCcccEEEecCC-e-EEEEEEecc
Q 010629 433 ----THALVCEDFSNDGLTDVILMTSN-G-VYGFVQTRQ 465 (505)
Q Consensus 433 ----~ap~Iv~DfngDG~nDiIVvT~~-G-iygfv~~~~ 465 (505)
.+.|.+.|.|+||+.|.|-...- | +|=|-+...
T Consensus 247 ~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~ 285 (570)
T 3hx6_A 247 VPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAG 285 (570)
T ss_dssp SCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCS
T ss_pred cCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCC
Confidence 34577899999999998887765 4 888876654
No 24
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=73.30 E-value=14 Score=39.75 Aligned_cols=56 Identities=20% Similarity=0.363 Sum_probs=38.7
Q ss_pred eEEEECC-CCCEEEEEeCCCC------CCcccEEeecCCCCcc--cEEEecCCeEEEEEEeccCCh
Q 010629 412 EAVVISP-GGSILTSIDLPAP------PTHALVCEDFSNDGLT--DVILMTSNGVYGFVQTRQPGA 468 (505)
Q Consensus 412 ~~~ils~-~G~vl~s~~Lp~p------P~ap~Iv~DfngDG~n--DiIVvT~~Giygfv~~~~~g~ 468 (505)
.++-||+ +|+++-.+++... .+.|+++.|+.-||.. =|++.+.+| +-|++-+..|.
T Consensus 271 ~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G-~l~~lD~~tG~ 335 (668)
T 1kv9_A 271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNG-FFYVLDRTNGK 335 (668)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTS-EEEEEETTTCC
T ss_pred eEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCC-EEEEEECCCCC
Confidence 4888896 9999999988532 3578899998777753 266667777 23444444443
No 25
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=72.38 E-value=37 Score=36.51 Aligned_cols=79 Identities=10% Similarity=0.109 Sum_probs=46.3
Q ss_pred cEEE-EecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEEE
Q 010629 338 DVVF-LTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVI 416 (505)
Q Consensus 338 D~vF-L~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~il 416 (505)
+.|| .+.+|.|.|++.. +|+.+|+..+........... . ..+-.++.. ....+++.+.+..+..|
T Consensus 67 g~vyv~~~~~~v~AlD~~----tG~~~W~~~~~~~~~~~~~~~---~-~~~~~~~~~------~~~~v~v~~~dg~l~al 132 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAA----SGKELWRYDPEVAKVKARTSC---C-DAVNRGVAL------WGDKVYVGTLDGRLIAL 132 (668)
T ss_dssp TEEEEEEGGGEEEEEETT----TCCEEEEECCCCCGGGGGGCT---T-CSCCCCCEE------EBTEEEEECTTSEEEEE
T ss_pred CEEEEECCCCeEEEEECC----CChhceEECCCCCcccccccc---c-cCCccceEE------ECCEEEEEcCCCEEEEE
Confidence 4454 4568999999963 348999987764332110000 0 001111111 12344555557788999
Q ss_pred CC-CCCEEEEEeCCC
Q 010629 417 SP-GGSILTSIDLPA 430 (505)
Q Consensus 417 s~-~G~vl~s~~Lp~ 430 (505)
|. +|+++-+.++..
T Consensus 133 D~~tG~~~W~~~~~~ 147 (668)
T 1kv9_A 133 DAKTGKAIWSQQTTD 147 (668)
T ss_dssp ETTTCCEEEEEECSC
T ss_pred ECCCCCEeeeeccCC
Confidence 96 999999999853
No 26
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=71.12 E-value=56 Score=29.08 Aligned_cols=54 Identities=31% Similarity=0.423 Sum_probs=40.8
Q ss_pred EEEee-cceEEEECC-CCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe-EEEEEEe
Q 010629 405 ILAGG-DQEAVVISP-GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG-VYGFVQT 463 (505)
Q Consensus 405 IlA~G-e~~~~ils~-~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~G-iygfv~~ 463 (505)
+++.| +..+.|.|. +|+.+..+..+. .++....|+.||. +++.+.+| |+-|-..
T Consensus 239 l~~~~~dg~v~iwd~~~~~~~~~~~~~~---~~i~~~~~~~~~~--~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 239 IVSCGEDRTVRIWSKENGSLKQVITLPA---ISIWSVDCMSNGD--IIVGSSDNLVRIFSQE 295 (313)
T ss_dssp EEEEETTSEEEEECTTTCCEEEEEECSS---SCEEEEEECTTSC--EEEEETTSCEEEEESC
T ss_pred EEEEecCCEEEEEECCCCceeEEEeccC---ceEEEEEEccCCC--EEEEeCCCcEEEEeCC
Confidence 44444 466777796 999999987664 4677788999996 88888998 7777544
No 27
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=70.54 E-value=38 Score=36.69 Aligned_cols=79 Identities=14% Similarity=0.080 Sum_probs=45.8
Q ss_pred ccEEEE-ecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEE
Q 010629 337 GDVVFL-TNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVV 415 (505)
Q Consensus 337 ~D~vFL-~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~i 415 (505)
.+.||+ +.+|.|.|++.. .|+.+|+............. .. ..+-.++.. ....+++++.+..+.-
T Consensus 70 ~g~vyv~~~~~~v~AlD~~----tG~~~W~~~~~~~~~~~~~~---~~-~~~~~~~~~------~~g~v~v~~~dg~l~A 135 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDAR----DGRLIWKYDPQSDRHRAGEA---CC-DAVNRGVAV------WKGKVYVGVLDGRLEA 135 (689)
T ss_dssp TTEEEEECGGGCEEEEETT----TCCEEEEECCCCCGGGGGGC---TT-CSCCCCCEE------ETTEEEEECTTSEEEE
T ss_pred CCEEEEEcCCCeEEEEECC----CCceeEEEcCCCCccccccc---cc-cCCCCccEE------ECCEEEEEccCCEEEE
Confidence 345555 457999999973 34999998765432111000 00 011111111 1234455555778889
Q ss_pred ECC-CCCEEEEEeCC
Q 010629 416 ISP-GGSILTSIDLP 429 (505)
Q Consensus 416 ls~-~G~vl~s~~Lp 429 (505)
||. +|+++-+..+.
T Consensus 136 lDa~TG~~~W~~~~~ 150 (689)
T 1yiq_A 136 IDAKTGQRAWSVDTR 150 (689)
T ss_dssp EETTTCCEEEEEECC
T ss_pred EECCCCCEeeeecCc
Confidence 997 99999999886
No 28
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=69.02 E-value=45 Score=36.82 Aligned_cols=91 Identities=11% Similarity=0.207 Sum_probs=58.8
Q ss_pred ceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEe-----------------
Q 010629 346 GEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAG----------------- 408 (505)
Q Consensus 346 G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~----------------- 408 (505)
-.|++|+-.| +.+||+..+... .+| ....++.++-|.-++..++|+.+
T Consensus 155 ~~l~aY~ldG-----~~LW~idlg~Ni-----~aG-----ahyt~~~V~DlDGDGkaEIvv~TadGt~dg~g~vigd~~~ 219 (620)
T 2zuy_A 155 VLIDAYKLDG-----TFLWRINLGRNI-----RAG-----AHYTQFMVYDLDGDGKAEIAMKTADGTTDGKGHIIGDEQA 219 (620)
T ss_dssp CEEEEECTTS-----CEEEEEECCTTS-----CCS-----TTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSCTTC
T ss_pred cEEEEEECCC-----CEEEEEcCCCCc-----ccc-----cccCceeEEEcCCCCcceEEEEccCCcccCcceeeccccc
Confidence 4799999765 999998876421 111 11124555555555555555542
Q ss_pred -----------ecceEEEECC-CCCEEEEEeCC-CC-CCc-------------ccEEeecCCCCcccEEEe
Q 010629 409 -----------GDQEAVVISP-GGSILTSIDLP-AP-PTH-------------ALVCEDFSNDGLTDVILM 452 (505)
Q Consensus 409 -----------Ge~~~~ils~-~G~vl~s~~Lp-~p-P~a-------------p~Iv~DfngDG~nDiIVv 452 (505)
|...+.|++- +|+.|.+++++ .. ++. ..-+.+|+|| .-.+|+.
T Consensus 220 dyr~~~g~il~G~eyL~vfdG~TG~~l~t~~~~p~rg~~~~WGD~yGnR~drf~~~vayLDG~-~Ps~v~~ 289 (620)
T 2zuy_A 220 DFRNEQGRILSGPEYLTVFKGETGEALTTVEYEPPRGKLEDWGDGYGNRMDRFLAGTAYLDGE-RPSLVMA 289 (620)
T ss_dssp CCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCSGGGGTSSSSTTTTCEEEEEECTTCC--CEEEEE
T ss_pred ccccccceEecCCeEEEEEcCCCcceeeecccCCCcCccccccccccccccccceeEEecCCC-CceEEEe
Confidence 5666899996 89999999994 21 111 4678999999 5555553
No 29
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=65.73 E-value=55 Score=35.32 Aligned_cols=83 Identities=19% Similarity=0.216 Sum_probs=57.0
Q ss_pred ceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEEECC-CCCEEE
Q 010629 346 GEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISP-GGSILT 424 (505)
Q Consensus 346 G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~ils~-~G~vl~ 424 (505)
|.|++++.. .++.+|+...+..+.. . .+.. .+. -+++++.+..+.++|. +|++|-
T Consensus 457 g~l~A~D~~----tG~~~W~~~~~~~~~~----------g----~~~~-----~g~-~v~~g~~dg~l~a~D~~tG~~lw 512 (677)
T 1kb0_A 457 GRLLAWDPV----AQKAAWSVEHVSPWNG----------G----TLTT-----AGN-VVFQGTADGRLVAYHAATGEKLW 512 (677)
T ss_dssp EEEEEEETT----TTEEEEEEEESSSCCC----------C----EEEE-----TTT-EEEEECTTSEEEEEETTTCCEEE
T ss_pred cEEEEEeCC----CCcEEeecCCCCCCcC----------c----ceEe-----CCC-EEEEECCCCcEEEEECCCCceee
Confidence 999999975 2389999877543211 0 1111 111 2233445678889996 999999
Q ss_pred EEeCCCCCCcccEEeecCCCCcccEEEecC
Q 010629 425 SIDLPAPPTHALVCEDFSNDGLTDVILMTS 454 (505)
Q Consensus 425 s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~ 454 (505)
++.+|+...+.|+.- .-||...+++.+.
T Consensus 513 ~~~~~~~~~~~p~~y--~~~G~~~v~~~~G 540 (677)
T 1kb0_A 513 EAPTGTGVVAAPSTY--MVDGRQYVSVAVG 540 (677)
T ss_dssp EEECSSCCCSCCEEE--EETTEEEEEEEEC
T ss_pred eeeCCCCcccCCEEE--EeCCEEEEEEecc
Confidence 999999888888875 5677777777655
No 30
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=63.98 E-value=18 Score=33.21 Aligned_cols=55 Identities=13% Similarity=0.184 Sum_probs=40.2
Q ss_pred ceEEEeecceEEEECCCCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCeEEEEEE
Q 010629 403 QMILAGGDQEAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQ 462 (505)
Q Consensus 403 ~~IlA~Ge~~~~ils~~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~Giygfv~ 462 (505)
.+.+|. ...+.+++++|+++..+.+|..|+ ..-|.++.-.-|.|.|.+|+|-|-.
T Consensus 230 ~l~v~~-~~~v~~~~~~g~~~~~~~~~~~~~----~~~f~~~d~~~L~v~t~~~l~~~~~ 284 (296)
T 3e5z_A 230 LIWASA-GDGVHVLTPDGDELGRVLTPQTTS----NLCFGGPEGRTLYMTVSTEFWSIET 284 (296)
T ss_dssp CEEEEE-TTEEEEECTTSCEEEEEECSSCCC----EEEEESTTSCEEEEEETTEEEEEEC
T ss_pred CEEEEc-CCeEEEECCCCCEEEEEECCCCce----eEEEECCCCCEEEEEcCCeEEEEEc
Confidence 455555 778999999999999999987722 2334444445688889999988754
No 31
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=63.93 E-value=66 Score=33.99 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=36.4
Q ss_pred eEEEECC-CCCEEEEEeCCCC------CCcccEEeecCCCCcc-c-EEEecCCeEEEEEEeccCCh
Q 010629 412 EAVVISP-GGSILTSIDLPAP------PTHALVCEDFSNDGLT-D-VILMTSNGVYGFVQTRQPGA 468 (505)
Q Consensus 412 ~~~ils~-~G~vl~s~~Lp~p------P~ap~Iv~DfngDG~n-D-iIVvT~~Giygfv~~~~~g~ 468 (505)
.++-||+ +|+++-.+++... ....|++.|..-||.. . +++.+.+| +-|++-+..|.
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G-~l~~lD~~tG~ 337 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNG-ILYTLNRENGN 337 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTS-EEEEEETTTCC
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCc-EEEEEECCCCC
Confidence 5888897 9999999988642 2456667776666753 4 44566777 34455555553
No 32
>3vi3_A Integrin alpha-5; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_A*
Probab=63.54 E-value=13 Score=40.90 Aligned_cols=66 Identities=12% Similarity=0.129 Sum_probs=35.4
Q ss_pred eeeeeeEEeecccCCccceEEEee---c--ceEEEECC-CCCEEEEEeCCCCCC-----cccEEeecCCCCcccEEEec
Q 010629 386 TVVPTLKAFSLRVHDNQQMILAGG---D--QEAVVISP-GGSILTSIDLPAPPT-----HALVCEDFSNDGLTDVILMT 453 (505)
Q Consensus 386 ~~~PsL~af~lr~~~~~~~IlA~G---e--~~~~ils~-~G~vl~s~~Lp~pP~-----ap~Iv~DfngDG~nDiIVvT 453 (505)
.+=+++++--+..++...+|+.+- . -.+.|+.. ++..+.. |....+ ..+-+.|||+||.+||+|-.
T Consensus 230 y~G~sva~gd~ngDg~~DlvvGaP~~~~~~G~V~v~~~~~~~~~~~--l~G~q~gs~FG~sva~~D~NgDG~~DLvVGA 306 (632)
T 3vi3_A 230 YLGYSVAVGEFSGDDTEDFVAGVPKGNLTYGYVTILNGSDIRSLYN--FSGEQMASYFGYAVAATDVNGDGLDDLLVGA 306 (632)
T ss_dssp CBTSSEEEECCSSSSSCEEEEEEEEEETTEEEEEEECSSSCCEEEE--EECSSTTSCTTSEEEEECCSSSSSCEEEEEE
T ss_pred CcccEEEEEEecCCCCeEEEEeccccCCccCEEEEEECCCCcEEEE--EecccccCcCcceEEEEecCCCCccceeeec
Confidence 344566654454445555444310 1 23444443 3444433 332221 34557899999999998864
No 33
>3vi3_A Integrin alpha-5; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_A*
Probab=59.70 E-value=9.7 Score=41.82 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=21.4
Q ss_pred EEeecCCCCcccEEEecC------Ce-EEEEEEec
Q 010629 437 VCEDFSNDGLTDVILMTS------NG-VYGFVQTR 464 (505)
Q Consensus 437 Iv~DfngDG~nDiIVvT~------~G-iygfv~~~ 464 (505)
.++|+|+||.+||+|..- .| +|.|....
T Consensus 357 ~~gDlngDG~~DlaVGap~~~~~~~G~Vyv~~G~~ 391 (632)
T 3vi3_A 357 PLGDLDQDGYNDVAIGAPFGGETQQGVVFVFPGGP 391 (632)
T ss_dssp EEESSSSSSSCEEEEEETTCSTTSSCEEEEECEET
T ss_pred eeeccCCCCCcCEEEeCCcCCcCCCceEEEEecCC
Confidence 368999999999999764 34 77775443
No 34
>3fcs_A Integrin, alpha 2B; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens}
Probab=58.42 E-value=16 Score=42.02 Aligned_cols=68 Identities=16% Similarity=0.105 Sum_probs=35.4
Q ss_pred CeeeeeeEEeecccCCccceEEEeec-----ceEEEECCCCCEEEEEeCCCCCC-----cccEEeecCCCCcccEEEec
Q 010629 385 STVVPTLKAFSLRVHDNQQMILAGGD-----QEAVVISPGGSILTSIDLPAPPT-----HALVCEDFSNDGLTDVILMT 453 (505)
Q Consensus 385 ~~~~PsL~af~lr~~~~~~~IlA~Ge-----~~~~ils~~G~vl~s~~Lp~pP~-----ap~Iv~DfngDG~nDiIVvT 453 (505)
.++=+++++--+..++....+++.+- ...|+|- ++.......|..... .-+-++||||||..||+|..
T Consensus 233 sy~G~sva~gD~~gDG~~d~~vvGaPr~~~~~G~V~i~-~~~~~~~~~l~G~q~gs~fG~sva~gD~NgDG~~DLvVGA 310 (959)
T 3fcs_A 233 GYWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEIL-DSYYQRLHRLRGEQMASYFGHSVAVTDVNGDGRHDLLVGA 310 (959)
T ss_dssp CCTTSEEEEECCSSCSSSCEEEEEETTHHHHTCEEEEE-CTTCCEEEEEECSSTTSCTTSEEEEECCSSSSSCEEEEEE
T ss_pred CccccEEEEEEECCCCCeeEEEEECCcccCCcceEEEE-CCCceEEEEeccccCCCCceeEEEEEEecCCCccceeEec
Confidence 44456777655554444322332211 1244442 233333344433222 23457999999999998854
No 35
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=55.71 E-value=80 Score=31.81 Aligned_cols=29 Identities=10% Similarity=0.199 Sum_probs=23.6
Q ss_pred ccEEEEecCceEEEecCCCCCCcceeeeeeccc
Q 010629 337 GDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTD 369 (505)
Q Consensus 337 ~D~vFL~s~G~vTs~~~~g~g~~~~~~Wq~~T~ 369 (505)
.-+++-+.+|.|.+++.. +|..+|+..++
T Consensus 11 ~~V~v~t~dG~l~Ald~~----tG~~~W~~~~~ 39 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRR----NGHIIWSIEPE 39 (339)
T ss_dssp EEEEEEETTSCEEEEETT----TTEEEEEECGG
T ss_pred CEEEEEeCCCeEEEEECC----CCcEEEEecCC
Confidence 456777889999999953 45999999887
No 36
>3t3p_A Integrin alpha-IIB; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3fcu_A* 3nif_A* 3nid_A* 3t3m_A* 3nig_A* 2vdr_A* 2vc2_A* 2vdk_A* 2vdm_A* 2vdn_A* 2vdl_A* 2vdp_A* 2vdq_A* 2vdo_A* 1txv_A* 1ty3_A* 1ty5_A* 1ty6_A* 1ty7_A* 1tye_A*
Probab=52.68 E-value=7.8 Score=40.94 Aligned_cols=27 Identities=26% Similarity=0.503 Sum_probs=21.3
Q ss_pred EeecCCCCcccEEEecC------Ce-EEEEEEec
Q 010629 438 CEDFSNDGLTDVILMTS------NG-VYGFVQTR 464 (505)
Q Consensus 438 v~DfngDG~nDiIVvT~------~G-iygfv~~~ 464 (505)
++|+|+||.+||+|..- .| +|.|....
T Consensus 363 ~gD~ngDG~~Dl~vgap~~~~~~~G~vyv~~G~~ 396 (457)
T 3t3p_A 363 LGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQS 396 (457)
T ss_dssp EECSSCSSSCEEEEEETTCSTTSSCEEEEECEET
T ss_pred ccCCCCCCCcceeEeccccCCCCCceEEEEeCCC
Confidence 68999999999999763 34 88876554
No 37
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=52.45 E-value=1.5e+02 Score=32.08 Aligned_cols=57 Identities=19% Similarity=0.344 Sum_probs=38.5
Q ss_pred eEEEECC-CCCEEEEEeCCCC------CCcccEEeecCCCCc--ccEEEecCCeEEEEEEeccCChh
Q 010629 412 EAVVISP-GGSILTSIDLPAP------PTHALVCEDFSNDGL--TDVILMTSNGVYGFVQTRQPGAL 469 (505)
Q Consensus 412 ~~~ils~-~G~vl~s~~Lp~p------P~ap~Iv~DfngDG~--nDiIVvT~~Giygfv~~~~~g~~ 469 (505)
.++-+|+ +|+++-.++.... .++|+++.|+.-||. .-|++.+++| +-|++-+..|.+
T Consensus 276 ~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G-~l~~lD~~tG~~ 341 (689)
T 1yiq_A 276 SIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNG-FFYVIDRATGEL 341 (689)
T ss_dssp EEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTS-EEEEEETTTCCE
T ss_pred eEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCC-eEEEEECCCCCE
Confidence 3788897 8999998887432 567889999877775 3466667777 233445555543
No 38
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=49.89 E-value=34 Score=39.79 Aligned_cols=77 Identities=12% Similarity=0.126 Sum_probs=43.7
Q ss_pred CeeeeeeEE-eecccCCccceEEEee-c----ceEEEEC--CC-CCE-EEEEeCCCCCCccc---------EEeecCCCC
Q 010629 385 STVVPTLKA-FSLRVHDNQQMILAGG-D----QEAVVIS--PG-GSI-LTSIDLPAPPTHAL---------VCEDFSNDG 445 (505)
Q Consensus 385 ~~~~PsL~a-f~lr~~~~~~~IlA~G-e----~~~~ils--~~-G~v-l~s~~Lp~pP~ap~---------Iv~DfngDG 445 (505)
.+|--++++ .-+..++..++++.+. + -.+-|.- .+ |-. ..+..|+..+..+. ...|||+||
T Consensus 500 ~~FG~sva~~gD~NgDG~~Dl~VGAP~~~~~~G~vyi~~g~~~~g~~~~~~q~l~~~~~~~~~~~FG~sv~~~~D~dgDG 579 (1095)
T 3k6s_A 500 GRFGAALTVLGDVNGDKLTDVVIGAPGEEENRGAVYLFHGVLGPSISPSHSQRIAGSQLSSRLQYFGQALSGGQDLTQDG 579 (1095)
T ss_dssp CCBTSCEEEEECSSSSSCCEEEEECTTTTTSCCBEEEEEBCSSSCBCSSCSBCCBTTSSCTTCSSEEEEEEECCCCSCSS
T ss_pred ccCccceEeecccCCCCCcCEEEeCCcCCCCCCEEEEecCCCCCCccccceEEeecCCCCccccccCceeecccccCCCC
Confidence 445456665 3555666667655442 1 1233332 23 211 23344554444322 257999999
Q ss_pred cccEEEecCCeEEEEE
Q 010629 446 LTDVILMTSNGVYGFV 461 (505)
Q Consensus 446 ~nDiIVvT~~Giygfv 461 (505)
..||+|-..+.+|-|.
T Consensus 580 ~~DL~VGa~G~v~v~r 595 (1095)
T 3k6s_A 580 LVDLAVGARGQVLLLR 595 (1095)
T ss_dssp SCEEEEEESSCEEEEE
T ss_pred CccEEEEcCCCeeEec
Confidence 9999999976687774
No 39
>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin degradation, cortalcerone/microthecin forming, metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB: 4a7y_A* 4a7z_A*
Probab=49.85 E-value=83 Score=36.16 Aligned_cols=110 Identities=6% Similarity=0.067 Sum_probs=57.9
Q ss_pred EecCc--eEEEecCCCCCCcceeeeeeccccc--------cccCCC-CCCC-CCc-CeeeeeeEEeecccCCccceEEEe
Q 010629 342 LTNRG--EVTAYSPGLHGHDAIWQWQLLTDAT--------WSNLPS-PSGM-TEA-STVVPTLKAFSLRVHDNQQMILAG 408 (505)
Q Consensus 342 L~s~G--~vTs~~~~g~g~~~~~~Wq~~T~a~--------W~~~~~-~~g~-~e~-~~~~PsL~af~lr~~~~~~~IlA~ 408 (505)
+..+| +|.++.| .|..++.|....+.. |.+..- ..|. .|. ..+-=+|.+--|..++..++|++.
T Consensus 280 LdGDG~deIaTIEP---fHGd~VaVYt~~~ggp~g~~~~~WkrhVId~~g~~~e~~~~fgHaL~~gDldGDG~~DIVvG~ 356 (900)
T 4a7k_A 280 VGDDYAGYICSAEA---FHGNTVSVYTKPAGSPTGIVRAEWTRHVLDVFGPLNGKHTGSIHQVVCADIDGDGEDEFLVAM 356 (900)
T ss_dssp ETTEEEEEEEEEES---TTCSEEEEEECCTTCCSSSTTSCCEEEEEEECCCCCTTSCCSEEEEEEECTTSSSBCEEEEEE
T ss_pred cCCCCceeEEEecC---CcCCEEEEEECCCCCccccccccceeeeecccCcccccccCCceeEEEEecCCCCcccEEEEe
Confidence 45555 5556655 233477777666443 765210 0000 010 111224444444444555655543
Q ss_pred ecc--------eEEEE---CC-CCCEEEEEeCCCCCCcccEEeecCCCC-cccEEEecCC
Q 010629 409 GDQ--------EAVVI---SP-GGSILTSIDLPAPPTHALVCEDFSNDG-LTDVILMTSN 455 (505)
Q Consensus 409 Ge~--------~~~il---s~-~G~vl~s~~Lp~pP~ap~Iv~DfngDG-~nDiIVvT~~ 455 (505)
-.. .+.+. +. +|+-. ...+..-...-+.+.|||||| ..|||+...+
T Consensus 357 R~~~~~D~~~~gL~~Y~~~D~g~GsF~-~~vID~g~~~~v~aaDLDGDG~dlDIV~asy~ 415 (900)
T 4a7k_A 357 MGADPPDFQRTGVWCYKLVDRTNMKFS-KTKVSSVSAGRIATANFHSQGSEVDIATISYS 415 (900)
T ss_dssp ECCSSCCGGGEEEEEEEEEETTTTEEE-EEEEECSCCSEEEEECCSSSSSCCEEEEECCB
T ss_pred cCCCCccCCcceEEEEEEecCCCCcEE-EEEEcCCCcceEEEeccCCCCCcccEEEeecc
Confidence 221 23333 33 44433 333444478899999999999 9999998544
No 40
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=47.37 E-value=51 Score=32.74 Aligned_cols=106 Identities=23% Similarity=0.304 Sum_probs=58.9
Q ss_pred ccEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEEE
Q 010629 337 GDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVI 416 (505)
Q Consensus 337 ~D~vFL~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~il 416 (505)
.-+++|+++|.|=|......|+=+. |..+ ....|.+... +......-.-+|.|..+.++|
T Consensus 63 ~~~~~l~~~G~v~~wG~n~~GqLG~------------------g~~~-~~~~p~~v~~-~~~~~~~~v~i~~G~~h~~al 122 (389)
T 3kci_A 63 QTLFAVTADGKLYATGYGAGGRLGI------------------GGTE-SVSTPTLLES-IQHVFIKKVAVNSGGKHCLAL 122 (389)
T ss_dssp TEEEEEETTSCEEEEECCGGGTTSS------------------SSSC-CEEEEEECGG-GTTSCEEEEEECTTCSEEEEE
T ss_pred CeEEEEcCCCcEEEEECCCCCCCCC------------------CCcC-CccCCEEccc-ccCCceeEEEECcCCCeEEEE
Confidence 4578899999999887544322110 0011 3334443221 111111123467799999999
Q ss_pred CCCCCEEEEEe-----C----CCCCCcccEEeecCCCCccc-------EEEecCCe-EEEEEE
Q 010629 417 SPGGSILTSID-----L----PAPPTHALVCEDFSNDGLTD-------VILMTSNG-VYGFVQ 462 (505)
Q Consensus 417 s~~G~vl~s~~-----L----p~pP~ap~Iv~DfngDG~nD-------iIVvT~~G-iygfv~ 462 (505)
+.+|++.+-=. | ..+-..|..+..|.+..+.+ .+++|.+| +|+|-.
T Consensus 123 ~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~ 185 (389)
T 3kci_A 123 SSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGK 185 (389)
T ss_dssp ETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred cCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCC
Confidence 99999875311 1 11223345555566554444 47788888 998853
No 41
>3fcs_A Integrin, alpha 2B; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens}
Probab=42.40 E-value=14 Score=42.48 Aligned_cols=27 Identities=26% Similarity=0.503 Sum_probs=20.9
Q ss_pred EeecCCCCcccEEEecC------Ce-EEEEEEec
Q 010629 438 CEDFSNDGLTDVILMTS------NG-VYGFVQTR 464 (505)
Q Consensus 438 v~DfngDG~nDiIVvT~------~G-iygfv~~~ 464 (505)
++||||||.+||+|..- .| +|.|....
T Consensus 363 ~gD~ngDG~~Dl~Vgap~~~~~~~G~Vyvy~g~~ 396 (959)
T 3fcs_A 363 LGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQS 396 (959)
T ss_dssp EECSSCSSSCEEEEEETTCSTTSSCEEEEECEET
T ss_pred eecCCCCCCcceEEecccCCCCCCceEEEEecCC
Confidence 68999999999999752 34 88776543
No 42
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=42.23 E-value=61 Score=30.10 Aligned_cols=52 Identities=12% Similarity=0.254 Sum_probs=36.7
Q ss_pred EEEeecceEEEECCCCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCeEEEEE
Q 010629 405 ILAGGDQEAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFV 461 (505)
Q Consensus 405 IlA~Ge~~~~ils~~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~Giygfv 461 (505)
|+++....+.+++++|+++..+.+|..|. -.-|. +.-+-|.|.|.+|+|-|-
T Consensus 252 lwv~~~~gv~~~~~~g~~~~~~~~~~~~~----~~~f~-~d~~~L~it~~~~l~~~~ 303 (305)
T 3dr2_A 252 LWSSSGTGVCVFDSDGQLLGHIPTPGTAS----NCTFD-QAQQRLFITGGPCLWMLP 303 (305)
T ss_dssp EEECCSSEEEEECTTSCEEEEEECSSCCC----EEEEC-TTSCEEEEEETTEEEEEE
T ss_pred EEEecCCcEEEECCCCCEEEEEECCCcee----EEEEe-CCCCEEEEEcCCeEEEEE
Confidence 44444567999999999999999988433 23344 333468888888998763
No 43
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=39.93 E-value=1.3e+02 Score=32.81 Aligned_cols=40 Identities=35% Similarity=0.475 Sum_probs=32.8
Q ss_pred cCceeEEEccCCCeeEEEecCC-----CCe----eeeccCCCceeEEEe
Q 010629 209 KEGIEAVHLASGRTVCKLHLQE-----GGL----HADINGDGVLDHVQA 248 (505)
Q Consensus 209 ~~GIEViHL~SGrtlckL~L~~-----~~l----~aDINgDGVlD~V~a 248 (505)
+.+|=|+.|.||..|-++.+.. +++ -.|.|+||++|.|.+
T Consensus 222 ~~~Lyv~d~~tG~li~~i~~~~~~~~~~Gls~~~~~D~d~Dg~~D~~Ya 270 (570)
T 3hx6_A 222 KAALLIIDMETGAITRKLEVTGRTGVPNGLSSPRLADNNSDGVADYAYA 270 (570)
T ss_dssp CEEEEEEETTTCCEEEEEEECCSTTSCCCEEEEEEECTTSSSBCCEEEE
T ss_pred ccEEEEEECCCCceEEEEecCCCCccCCccccceEEecCCCCceeEEEE
Confidence 5578899999999999998753 122 369999999999987
No 44
>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin degradation, cortalcerone/microthecin forming, metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB: 4a7y_A* 4a7z_A*
Probab=39.41 E-value=64 Score=37.06 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=25.0
Q ss_pred CCCcccEEeecCCCCcccEEEecC---------C-eEEEEEEe
Q 010629 431 PPTHALVCEDFSNDGLTDVILMTS---------N-GVYGFVQT 463 (505)
Q Consensus 431 pP~ap~Iv~DfngDG~nDiIVvT~---------~-Giygfv~~ 463 (505)
|-++-+-++||||||..|||+.+. . .+|.|.+-
T Consensus 152 pgvHrv~agDLDGDGrlDLIvAsl~g~KeGws~p~kL~~fe~P 194 (900)
T 4a7k_A 152 PGMHRLKAGHFTRTDRVQVVAVPIVVASSDLTTPADVIIFTAP 194 (900)
T ss_dssp TTEEEEEEECSSCSSSCEEEEEESCSSTTCCSSCEEEEEEECC
T ss_pred CceEEEEEEEECCCCCEEEEEEeccccCcCcCCCceEEEEECC
Confidence 445668899999999999999872 2 37777643
No 45
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=38.76 E-value=28 Score=35.23 Aligned_cols=19 Identities=32% Similarity=0.529 Sum_probs=14.2
Q ss_pred EEeeecCCccceeceecCC
Q 010629 47 AFYAFAGRSGLLRWSRKNE 65 (505)
Q Consensus 47 syyAf~g~tG~~RW~h~~~ 65 (505)
..||||.+||+++|+.+.+
T Consensus 21 ~l~Ald~~tG~~~W~~~~~ 39 (339)
T 2be1_A 21 GLHAVDRRNGHIIWSIEPE 39 (339)
T ss_dssp CEEEEETTTTEEEEEECGG
T ss_pred eEEEEECCCCcEEEEecCC
Confidence 3578888888888887654
No 46
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=38.07 E-value=1.2e+02 Score=30.17 Aligned_cols=105 Identities=19% Similarity=0.326 Sum_probs=53.0
Q ss_pred cccEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEee----cc
Q 010629 336 HGDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGG----DQ 411 (505)
Q Consensus 336 ~~D~vFL~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~G----e~ 411 (505)
+-+++|+||+|.+=.+.. |++. ++.|... ++ ....| ++|..++.--.++++- +.
T Consensus 53 ~d~ll~fT~~Gr~y~~~~----------~~lp-~~~r~~~------G~---~i~~~--l~l~~~e~i~~~~~~~~~~~e~ 110 (327)
T 3uc1_A 53 HDLILFFTTQGRVYRAKA----------YDLP-EASRTAR------GQ---HVANL--LAFQPEERIAQVIQIRGYTDAP 110 (327)
T ss_dssp TSEEEEEETTSEEEEEEG----------GGSC-BCCSSSC------CE---EHHHH--TTCCTTCCEEEEEEESSTTSSS
T ss_pred CCEEEEEeCCCeEEEEEH----------HHCc-CCCccCC------CE---EHHHc--cCCCCCCEEEEEEEeccCCCCC
Confidence 467999999999877752 2222 2344332 11 11111 2333333333333333 35
Q ss_pred eEEEECCCCCEEEEE--eCCCCCCcccEEeecC-C---------CCcccEEEecCCe-EEEEEE
Q 010629 412 EAVVISPGGSILTSI--DLPAPPTHALVCEDFS-N---------DGLTDVILMTSNG-VYGFVQ 462 (505)
Q Consensus 412 ~~~ils~~G~vl~s~--~Lp~pP~ap~Iv~Dfn-g---------DG~nDiIVvT~~G-iygfv~ 462 (505)
.+++++.+|.+-.+- ++..+-..-.+..-|. + ++..+|++.|+.| +|=|-.
T Consensus 111 ~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~ 174 (327)
T 3uc1_A 111 YLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSA 174 (327)
T ss_dssp EEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEC
T ss_pred EEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEEC
Confidence 677778888875442 3333221222222221 1 2446799999999 555533
No 47
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=38.05 E-value=76 Score=30.99 Aligned_cols=84 Identities=14% Similarity=0.242 Sum_probs=47.9
Q ss_pred cEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEEEC
Q 010629 338 DVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVIS 417 (505)
Q Consensus 338 D~vFL~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~ils 417 (505)
-+++-..+|.|.++++. .+..+|+..... |.. +..++ +. .-...++++..+..+..+|
T Consensus 132 ~v~~~~~dg~v~a~d~~----tG~~~W~~~~~~-~~~-~~~~~----~~------------~~~~~v~~~~~dg~v~a~d 189 (369)
T 2hz6_A 132 LLYLGRTEYTITMYDTK----TRELRWNATYFD-YAA-SLPED----DV------------DYKMSHFVSNGDGLVVTVD 189 (369)
T ss_dssp -EEEEEEEEEEECCCSS----SSSCCCEEEEEE-ECC-BCCCC----CT------------TCCCCEEEEETSCEEEEEC
T ss_pred EEEEEecCCEEEEEECC----CCCEEEeEeccc-ccC-ccccC----Cc------------cccceEEEECCCCEEEEEE
Confidence 34455667999999974 237889876432 211 00110 00 0012334445556788889
Q ss_pred C-CCCEEEEEeCCCCCCcccEEeecCCCCc
Q 010629 418 P-GGSILTSIDLPAPPTHALVCEDFSNDGL 446 (505)
Q Consensus 418 ~-~G~vl~s~~Lp~pP~ap~Iv~DfngDG~ 446 (505)
. +|+++-+.++.+|.++ +-.++.||+
T Consensus 190 ~~tG~~~W~~~~~~pv~~---~~~~~~dg~ 216 (369)
T 2hz6_A 190 SESGDVLWIQNYASPVVA---FYVWQREGL 216 (369)
T ss_dssp TTTCCEEEEEECSSCEEE---EEECTTSSC
T ss_pred CCCCcEEEEecCCCceEE---EEEecCCce
Confidence 7 9999999998775443 223445553
No 48
>3t3p_A Integrin alpha-IIB; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3fcu_A* 3nif_A* 3nid_A* 3t3m_A* 3nig_A* 2vdr_A* 2vc2_A* 2vdk_A* 2vdm_A* 2vdn_A* 2vdl_A* 2vdp_A* 2vdq_A* 2vdo_A* 1txv_A* 1ty3_A* 1ty5_A* 1ty6_A* 1ty7_A* 1tye_A*
Probab=37.92 E-value=16 Score=38.67 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=19.4
Q ss_pred EeecCCCCcccEEEecCC--eEEEEE
Q 010629 438 CEDFSNDGLTDVILMTSN--GVYGFV 461 (505)
Q Consensus 438 v~DfngDG~nDiIVvT~~--Giygfv 461 (505)
+.|+|+||+.||+|-... .+|-|.
T Consensus 424 ~gDlngDG~~Dl~VGa~g~~~v~l~r 449 (457)
T 3t3p_A 424 AVDIDDNGYPDLIVGAYGANQVAVYR 449 (457)
T ss_dssp EECSSSSSSCEEEEEEGGGTEEEEEC
T ss_pred eeccCCCCCccEEEecCCCCeEEEeC
Confidence 799999999999999863 366553
No 49
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=36.51 E-value=3.2e+02 Score=26.83 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=31.3
Q ss_pred cceEEEECC-CCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecC-Ce-EEEE
Q 010629 410 DQEAVVISP-GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTS-NG-VYGF 460 (505)
Q Consensus 410 e~~~~ils~-~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~-~G-iygf 460 (505)
..++.|||. +++++++++++..|. -.-|+.||..=+.+... ++ |+.|
T Consensus 297 ~~~V~VID~~t~~vv~~i~~g~~p~----~i~~s~Dg~~~l~v~~~~~~~V~Vi 346 (373)
T 2mad_H 297 AKEVTSVTGLVGQTSSQISLGHDVD----AISVAQDGGPDLYALSAGTEVLHIY 346 (373)
T ss_pred CCeEEEEECCCCEEEEEEECCCCcC----eEEECCCCCeEEEEEcCCCCeEEEE
Confidence 457999997 899999999987544 44567777544444331 33 5554
No 50
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=34.28 E-value=75 Score=30.48 Aligned_cols=101 Identities=21% Similarity=0.207 Sum_probs=51.3
Q ss_pred cccEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEe-ecceEE
Q 010629 336 HGDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAG-GDQEAV 414 (505)
Q Consensus 336 ~~D~vFL~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~-Ge~~~~ 414 (505)
+-+++|+||+|.+-.+... ++... .+ ++ .|--..++|..++.--.++.+ .+..++
T Consensus 44 ~~~ll~~T~~Gr~~~~~~~----------elp~~-r~--------~G-----~~i~~~i~L~~~e~Iv~~~~~~~~~~ll 99 (256)
T 1zvt_A 44 NQPVVFVDSTGRSYAIDPI----------TLPSA-RG--------QG-----EPLTGKLTLPPGATVDHMLMESDDQKLL 99 (256)
T ss_dssp TSCEEEEETTSEEEEECGG----------GSCCS-SS--------CC-----EEGGGTCCCCTTCCEEEEECCCTTCEEE
T ss_pred CCEEEEEeCCCeEEEEEHH----------HCCCc-CC--------CC-----eEeeeeecCCCCCEEEEEEEeCCCCEEE
Confidence 3579999999998888631 11110 00 01 121113444444332222222 334577
Q ss_pred EECCCCCEEEE--EeCCCCCCcccEEeecCC-----------CCcccEEEecCCeE-EEE
Q 010629 415 VISPGGSILTS--IDLPAPPTHALVCEDFSN-----------DGLTDVILMTSNGV-YGF 460 (505)
Q Consensus 415 ils~~G~vl~s--~~Lp~pP~ap~Iv~Dfng-----------DG~nDiIVvT~~Gi-ygf 460 (505)
+++.+|.+-.+ -+++..-.+-..+..|.. |+-.+|+++|++|. .-|
T Consensus 100 l~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf 159 (256)
T 1zvt_A 100 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 159 (256)
T ss_dssp EEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEE
T ss_pred EEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEE
Confidence 77888877433 234443333334433322 34457999999994 444
No 51
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=32.53 E-value=66 Score=31.57 Aligned_cols=18 Identities=17% Similarity=0.414 Sum_probs=14.7
Q ss_pred cccEEEEecCceEEEecC
Q 010629 336 HGDVVFLTNRGEVTAYSP 353 (505)
Q Consensus 336 ~~D~vFL~s~G~vTs~~~ 353 (505)
+-+++|+|++|.+-++..
T Consensus 58 ~~~ll~~T~~G~~~~~~~ 75 (312)
T 1suu_A 58 HDYLFMISNEGKLYLINA 75 (312)
T ss_dssp TCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEECCCeEEEEEH
Confidence 357999999999888864
No 52
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=32.45 E-value=1.2e+02 Score=30.07 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=14.1
Q ss_pred cccEEEEecCceEEEec
Q 010629 336 HGDVVFLTNRGEVTAYS 352 (505)
Q Consensus 336 ~~D~vFL~s~G~vTs~~ 352 (505)
+-+++|+||+|.+-.+.
T Consensus 50 ~d~ll~fT~~Gr~~~~~ 66 (323)
T 1wp5_A 50 KDVLLLFTNKGNYLYCP 66 (323)
T ss_dssp TSEEEEEETTSEEEEEE
T ss_pred CCEEEEEECCCEEEEEE
Confidence 46899999999988776
No 53
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=31.65 E-value=3.3e+02 Score=26.80 Aligned_cols=104 Identities=16% Similarity=0.196 Sum_probs=58.1
Q ss_pred ccEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEEE
Q 010629 337 GDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVI 416 (505)
Q Consensus 337 ~D~vFL~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~il 416 (505)
.-.++|+++|.|-|......|+-+. + ..+ ....|..... ..+..-.-+|.|..+.++|
T Consensus 223 ~~t~~l~~~G~v~~wG~n~~GqLG~-------g-----------~~~-~~~~p~~v~~---~~~~~v~~v~~G~~hs~al 280 (389)
T 3kci_A 223 AQTLCLTDDDTVWSWGDGDYGKLGR-------G-----------GSD-GCKVPMKIDS---LTGLGVVKVECGSQFSVAL 280 (389)
T ss_dssp CEEEEEETTTEEEEEECCGGGTTSS-------S-----------SCC-CEEEEEECGG---GTTSCEEEEEEETTEEEEE
T ss_pred cEEEEEccCCEEEEEeCCCCCCCCC-------C-----------CCC-CccccEEecc---cCCCcEEEEeCCCCEEEEE
Confidence 5689999999999987654332111 0 001 2333432210 0122233478899999999
Q ss_pred CCCCCEEEEEe-----C----CCCCCcccEEeecCCCCccc-------EEEecCCe-EEEEEE
Q 010629 417 SPGGSILTSID-----L----PAPPTHALVCEDFSNDGLTD-------VILMTSNG-VYGFVQ 462 (505)
Q Consensus 417 s~~G~vl~s~~-----L----p~pP~ap~Iv~DfngDG~nD-------iIVvT~~G-iygfv~ 462 (505)
+.+|++.+-=. | ......|..+..+.+..+.+ .+++|.+| +|+|-.
T Consensus 281 t~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~ 343 (389)
T 3kci_A 281 TKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGD 343 (389)
T ss_dssp ETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred eCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeC
Confidence 99999876211 1 11122344444455443333 47778888 888854
No 54
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=31.58 E-value=1.8e+02 Score=27.97 Aligned_cols=50 Identities=14% Similarity=0.231 Sum_probs=28.8
Q ss_pred cceEEEECCCCCEEEEE--eCCCCCCcccEEeecC-C---------CCcccEEEecCCe-EEEE
Q 010629 410 DQEAVVISPGGSILTSI--DLPAPPTHALVCEDFS-N---------DGLTDVILMTSNG-VYGF 460 (505)
Q Consensus 410 e~~~~ils~~G~vl~s~--~Lp~pP~ap~Iv~Dfn-g---------DG~nDiIVvT~~G-iygf 460 (505)
+..+++++.+|.+-..- ++. +-..-.+...|. + ++-.+|++.|+.| +|-|
T Consensus 80 ~~~~v~~T~~G~iKr~~l~~~~-~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~ 142 (276)
T 3no0_A 80 GNRLLLATKKGYVKKIPLAEFE-YKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARF 142 (276)
T ss_dssp CSEEEEEETTSEEEEEEGGGTT-TCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEE
T ss_pred CCEEEEEeCCCEEEEEEHHHhh-hhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEE
Confidence 35577778888886543 333 222223333232 1 2445799999999 5666
No 55
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=31.39 E-value=1.1e+02 Score=31.75 Aligned_cols=96 Identities=21% Similarity=0.379 Sum_probs=59.1
Q ss_pred CceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeeccc--------------------CCccce
Q 010629 345 RGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRV--------------------HDNQQM 404 (505)
Q Consensus 345 ~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~--------------------~~~~~~ 404 (505)
+=+|..|..+- ..+|-+-++++=.. ++++-.|+.||... +.....
T Consensus 151 ~~QIInY~~d~-----~~kW~~l~GI~~~~----------~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~ 215 (365)
T 2xzh_A 151 GCQIINYRTDA-----KQKWLLLTGISAQQ----------NRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEEST 215 (365)
T ss_dssp TCEEEEEEECT-----TSCEEEEEEEEEET----------TEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEE
T ss_pred cceEEEEEECC-----CCCEEEEEeEeccC----------CccceeEEEEeecccccceeeeeeeeeEEEecCCCCCCce
Confidence 56888887644 77899988884322 34555666666543 222344
Q ss_pred EEEeecceEEEECCCCCEEEEEeCCCCC-CcccE---Eee--cCCCCccc-------------EEEecCCe-EEEE
Q 010629 405 ILAGGDQEAVVISPGGSILTSIDLPAPP-THALV---CED--FSNDGLTD-------------VILMTSNG-VYGF 460 (505)
Q Consensus 405 IlA~Ge~~~~ils~~G~vl~s~~Lp~pP-~ap~I---v~D--fngDG~nD-------------iIVvT~~G-iygf 460 (505)
+++-+++ .++|.-|--+|+.+|| -.|+. ..| |.-|..|| |-|+|+.| +|-|
T Consensus 216 lf~fa~r-----~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihly 286 (365)
T 2xzh_A 216 LFCFAVR-----GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLY 286 (365)
T ss_dssp EEEEEEE-----ETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred EEEEEEe-----cCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEE
Confidence 5555444 3467778888886653 23332 344 77788888 66778877 5544
No 56
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=29.91 E-value=1.5e+02 Score=26.48 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=38.6
Q ss_pred EEEeec-ceEEEECC-CCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe-EEEE
Q 010629 405 ILAGGD-QEAVVISP-GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG-VYGF 460 (505)
Q Consensus 405 IlA~Ge-~~~~ils~-~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~G-iygf 460 (505)
+||+|- ..+-|-|. +|+++..+.+..+ ..++....|+.||. -|+..+.|| |.-|
T Consensus 38 ~lAvg~D~tV~iWd~~tg~~~~~~~~~~~-~~~V~~v~~~~~~~-~l~sgs~Dg~v~iw 94 (318)
T 4ggc_A 38 VLAVALDNSVYLWSASSGDILQLLQMEQP-GEYISSVAWIKEGN-YLAVGTSSAEVQLW 94 (318)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCST-TCCEEEEEECTTSS-EEEEEETTSEEEEE
T ss_pred EEEEEeCCEEEEEECCCCCEEEEEEecCC-CCeEEEEEECCCCC-EEEEEECCCcEEEe
Confidence 778876 44555586 9999999988653 35577788999884 456667777 6665
No 57
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=29.88 E-value=98 Score=31.47 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=13.6
Q ss_pred cccEEEEecCceEEEec
Q 010629 336 HGDVVFLTNRGEVTAYS 352 (505)
Q Consensus 336 ~~D~vFL~s~G~vTs~~ 352 (505)
+-+++|+||+|.+=.+.
T Consensus 57 ~d~ll~fT~~G~~~~~~ 73 (370)
T 3l6v_A 57 HDTLLTFTSSGKVFWLP 73 (370)
T ss_dssp TCEEEEEETTSEEEEEE
T ss_pred CCEEEEEeCCCeEEEEE
Confidence 35688899999887776
No 58
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=28.61 E-value=1.8e+02 Score=27.90 Aligned_cols=69 Identities=16% Similarity=0.282 Sum_probs=42.2
Q ss_pred EEeecccCCccceEEEeecceEEEECCCCCEEEEEeCCCC--------CCcccEEeecCCCCcccEEEecCCe-EEEEEE
Q 010629 392 KAFSLRVHDNQQMILAGGDQEAVVISPGGSILTSIDLPAP--------PTHALVCEDFSNDGLTDVILMTSNG-VYGFVQ 462 (505)
Q Consensus 392 ~af~lr~~~~~~~IlA~Ge~~~~ils~~G~vl~s~~Lp~p--------P~ap~Iv~DfngDG~nDiIVvT~~G-iygfv~ 462 (505)
.+..+.+....=+||......++++|++|+++....|+.- |-+==|..|- || | |-|+++-= +|-|
T Consensus 176 S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~--~G-~-lyIvsE~n~~y~f-- 249 (255)
T 3qqz_A 176 SGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDA--SG-N-IYIVSEPNRFYRF-- 249 (255)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECT--TC-C-EEEEETTTEEEEE--
T ss_pred eeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECC--CC-C-EEEEcCCceEEEE--
Confidence 3333333333456666666888888999999999999842 3344455554 55 3 66665543 5554
Q ss_pred eccC
Q 010629 463 TRQP 466 (505)
Q Consensus 463 ~~~~ 466 (505)
++++
T Consensus 250 ~~~~ 253 (255)
T 3qqz_A 250 TPQS 253 (255)
T ss_dssp EC--
T ss_pred EecC
Confidence 5544
No 59
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=28.08 E-value=3.5e+02 Score=26.77 Aligned_cols=102 Identities=17% Similarity=0.286 Sum_probs=57.6
Q ss_pred ccEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeeccc-CCccceEEEeecceEEE
Q 010629 337 GDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRV-HDNQQMILAGGDQEAVV 415 (505)
Q Consensus 337 ~D~vFL~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~-~~~~~~IlA~Ge~~~~i 415 (505)
.-.++|+++|.|=|......|+-+. |..+ ....|... .. .+..-.-+|.|..+.++
T Consensus 131 ~h~~alt~~G~v~~wG~n~~GqLG~------------------g~~~-~~~~p~~v----~~~~~~~i~~va~G~~hs~a 187 (406)
T 4d9s_A 131 SHCLAVTMEGEVQSWGRNQNGQLGL------------------GDTE-DSLVPQKI----QAFEGIRIKMVAAGAEHTAA 187 (406)
T ss_dssp SEEEEEETTSCEEEEECCTTSTTCS------------------SSCC-CEEEEEEC----GGGTTCCEEEEEECSSEEEE
T ss_pred hheEEEcCCCcEEEeCCCCCccCCC------------------CCCC-CcccceEe----cccCCCcEEEEecCCCeEEE
Confidence 4578999999998887554333111 0011 33344332 11 12233458899999999
Q ss_pred ECCCCCEEEEE-----eC----CCCCCcccEEeecCCCCccc-------EEEecCCe-EEEEE
Q 010629 416 ISPGGSILTSI-----DL----PAPPTHALVCEDFSNDGLTD-------VILMTSNG-VYGFV 461 (505)
Q Consensus 416 ls~~G~vl~s~-----~L----p~pP~ap~Iv~DfngDG~nD-------iIVvT~~G-iygfv 461 (505)
|+.+|++..-= .| ......|..+..+++..+.+ .++.|.+| +|.|-
T Consensus 188 lt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG 250 (406)
T 4d9s_A 188 VTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYG 250 (406)
T ss_dssp EETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEE
T ss_pred EeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEee
Confidence 99999886431 11 01112334444555544444 56778888 88885
No 60
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=27.76 E-value=1.4e+02 Score=28.79 Aligned_cols=54 Identities=20% Similarity=0.261 Sum_probs=39.8
Q ss_pred EEEeecce-EEEECC-CCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe-EEEE
Q 010629 405 ILAGGDQE-AVVISP-GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG-VYGF 460 (505)
Q Consensus 405 IlA~Ge~~-~~ils~-~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~G-iygf 460 (505)
+||+|-+. +-|-|. +|+++..+.+..+ ..++....|+.||. =|++.+.+| |.-|
T Consensus 118 ~lAvgld~tV~lWd~~tg~~~~~~~~~~~-~~~V~sv~fspdg~-~lasgs~Dg~v~iW 174 (420)
T 4gga_A 118 VLAVALDNSVYLWSASSGDILQLLQMEQP-GEYISSVAWIKEGN-YLAVGTSSAEVQLW 174 (420)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCST-TCCEEEEEECTTSS-EEEEEETTSCEEEE
T ss_pred EEEEEeCCEEEEEECCCCCEEEEEEecCC-CCcEEEEEECCCCC-EEEEEECCCeEEEE
Confidence 78888654 445586 9999998888653 45677889999984 466777788 6666
No 61
>4dh2_B Dockerin type 1; cellulosome, cohesin, type I cohesin-dockerin, Pro protein interaction, cell adhesion; 1.75A {Clostridium thermocellum}
Probab=27.46 E-value=13 Score=30.46 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=13.5
Q ss_pred CCeeeeccCCCceeEEEe
Q 010629 231 GGLHADINGDGVLDHVQA 248 (505)
Q Consensus 231 ~~l~aDINgDGVlD~V~a 248 (505)
..+|.|+|+||.||..-.
T Consensus 4 ~~~~GDvN~DG~Vn~~D~ 21 (82)
T 4dh2_B 4 KAVIGDVNADGVVNISDY 21 (82)
T ss_dssp -CCTTCTTCSSSCSHHHH
T ss_pred CCceeccCCCCcCCHHHH
Confidence 457889999999887643
No 62
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=27.34 E-value=3.9e+02 Score=25.05 Aligned_cols=90 Identities=7% Similarity=0.023 Sum_probs=50.7
Q ss_pred EEEec--CceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEe-e-cceEEE
Q 010629 340 VFLTN--RGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAG-G-DQEAVV 415 (505)
Q Consensus 340 vFL~s--~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~-G-e~~~~i 415 (505)
+|.++ +|.|+.+++... +..+++.++..-. ..-.|.=.++ ....+.++. | +..+.+
T Consensus 97 lyv~~~~~~~v~~iD~~t~----~~~~~i~~g~~~~-----------~~~~p~~i~~-----~~~~lyv~~~~~~~~v~v 156 (328)
T 3dsm_A 97 AYVTQIWDYRIFIINPKTY----EITGYIECPDMDM-----------ESGSTEQMVQ-----YGKYVYVNCWSYQNRILK 156 (328)
T ss_dssp EEEEEBSCSEEEEEETTTT----EEEEEEECTTCCT-----------TTCBCCCEEE-----ETTEEEEEECTTCCEEEE
T ss_pred EEEEECCCCeEEEEECCCC----eEEEEEEcCCccc-----------cCCCcceEEE-----ECCEEEEEcCCCCCEEEE
Confidence 55555 889999997542 6666665443111 1112322222 122333332 3 678999
Q ss_pred ECC-CCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCC
Q 010629 416 ISP-GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSN 455 (505)
Q Consensus 416 ls~-~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~ 455 (505)
+|+ +|+++.++++...|.. | -|+.||. +.|++..
T Consensus 157 iD~~t~~~~~~i~~g~~p~~--i--~~~~dG~--l~v~~~~ 191 (328)
T 3dsm_A 157 IDTETDKVVDELTIGIQPTS--L--VMDKYNK--MWTITDG 191 (328)
T ss_dssp EETTTTEEEEEEECSSCBCC--C--EECTTSE--EEEEBCC
T ss_pred EECCCCeEEEEEEcCCCccc--e--EEcCCCC--EEEEECC
Confidence 997 8999999988655532 2 2345664 6666653
No 63
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=26.94 E-value=2.6e+02 Score=26.41 Aligned_cols=50 Identities=10% Similarity=0.028 Sum_probs=35.3
Q ss_pred eecceEEEECC-CCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCeEEEEEEec
Q 010629 408 GGDQEAVVISP-GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTR 464 (505)
Q Consensus 408 ~Ge~~~~ils~-~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~Giygfv~~~ 464 (505)
.|+..+.|.|. +|+.+.+++.+. ++....|+.|+ +++++.+.|+.|-...
T Consensus 78 ~~d~~v~iWd~~~~~~~~~~~~~~----~v~~v~~~~~~---~~~~~~~~i~i~d~~~ 128 (355)
T 3vu4_A 78 GVKEVVHIWDDVKKQDVSRIKVDA----PVKDLFLSREF---IVVSYGDVISVFKFGN 128 (355)
T ss_dssp SSTTEEEEEETTTTEEEEEEECSS----CEEEEEECSSE---EEEEETTEEEEEESST
T ss_pred CCccEEEEEECCCCcEEEEEECCC----ceEEEEEcCCE---EEEEEcCEEEEEECCC
Confidence 34457888896 999999988765 56677788764 5666666688776543
No 64
>3ul4_B Cellulosome enzyme, dockerin type I; cohesin, type I cohesin-dockerin COMP protein-protein interaction, cell adhesion; HET: PEG; 1.95A {Clostridium thermocellum}
Probab=26.05 E-value=14 Score=29.05 Aligned_cols=15 Identities=27% Similarity=0.696 Sum_probs=11.2
Q ss_pred eeeeccCCCceeEEE
Q 010629 233 LHADINGDGVLDHVQ 247 (505)
Q Consensus 233 l~aDINgDGVlD~V~ 247 (505)
+|.|+|+||.||..-
T Consensus 4 ~~GDvN~DG~Vn~~D 18 (65)
T 3ul4_B 4 LNGDLNRNGIVNDED 18 (65)
T ss_dssp CTTCTTCSSCCSHHH
T ss_pred EeecCCCCCcCCHHH
Confidence 567888888887653
No 65
>3od9_A Putative exported protein; beta sandwich, C-terminal helix, hydrolase inhibitor; 1.41A {Aeromonas hydrophila}
Probab=25.87 E-value=29 Score=31.26 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=34.8
Q ss_pred eeEEeecccCCccceEEEeecceE-EEECCCCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecC
Q 010629 390 TLKAFSLRVHDNQQMILAGGDQEA-VVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTS 454 (505)
Q Consensus 390 sL~af~lr~~~~~~~IlA~Ge~~~-~ils~~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~ 454 (505)
|+-+|+++.+.....-.-+|+-.. ++...+|.|.. ..+.|+||||.-.|||.|.
T Consensus 28 SiGSYsV~lY~~~~p~f~~~dF~~G~v~~RDGtI~~-----------a~laDlngd~~~eLiVt~~ 82 (135)
T 3od9_A 28 STGSYDVRLYSGANPQFPLDQFIDGKVLPRDGSIKE-----------LKLLDLNGDKQPELIVVVE 82 (135)
T ss_dssp SSEEEEEEEECCCSTTSTTSSEEEEEEEEESSEEEE-----------EEEECSSSSSSCEEEEEEE
T ss_pred ccccEEEEEEecCCCCCChhHhhhcceeccCCeEEE-----------EEEEecCCCCCeeEEEEEE
Confidence 666777654332211112233223 34456999876 6789999999999999886
No 66
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=25.38 E-value=1.5e+02 Score=30.28 Aligned_cols=101 Identities=15% Similarity=0.268 Sum_probs=0.0
Q ss_pred EEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEEECC
Q 010629 339 VVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISP 418 (505)
Q Consensus 339 ~vFL~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~ils~ 418 (505)
+++|+++|.|=|......|+-+. |..+ ....+.+.+.++.. ..-.-+|.|..+.++|+.
T Consensus 216 s~alt~~G~v~~wG~n~~GqLG~------------------~~~~-~~~~~~~~p~~~~~--~~v~~Ia~G~~hs~alt~ 274 (473)
T 3of7_A 216 ILFLDEEGMVFAWGNGQQNQLGR------------------KVME-RFRLKTLDPRPFGL--RHVKYIASGENHCFALTK 274 (473)
T ss_dssp EEEEETTSCEEEEECCTTSTTSS------------------CCCG-GGTTTTCSCEECSC--CSEEEEEECSSEEEEEET
T ss_pred EEEEeCCCeEEEEeCCCCCCCCC------------------Cccc-cccccccCceecCC--cceEEEecCCCeEEEEec
Q ss_pred CCCEEE-------EEeCCCCC------CcccEEeecCCCCccc-------EEEecCCe-EEEE
Q 010629 419 GGSILT-------SIDLPAPP------THALVCEDFSNDGLTD-------VILMTSNG-VYGF 460 (505)
Q Consensus 419 ~G~vl~-------s~~Lp~pP------~ap~Iv~DfngDG~nD-------iIVvT~~G-iygf 460 (505)
+|++.+ +.-++... ..|..+..+.+..+.+ .++.|.+| +|.|
T Consensus 275 ~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~w 337 (473)
T 3of7_A 275 DNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSC 337 (473)
T ss_dssp TSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEE
T ss_pred CCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEEeCCCeEEEEeCCCeEEEE
No 67
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=24.47 E-value=1e+02 Score=29.99 Aligned_cols=52 Identities=17% Similarity=0.232 Sum_probs=31.8
Q ss_pred eEEEeecceEEEECC-CCCEEEEEeCCCCCCcccEEeecCCCCcccEEEe-cCCe-EEEEEE
Q 010629 404 MILAGGDQEAVVISP-GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILM-TSNG-VYGFVQ 462 (505)
Q Consensus 404 ~IlA~Ge~~~~ils~-~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVv-T~~G-iygfv~ 462 (505)
++++..+..+..+|. +|+++-+.++ .+..+.|++.| | .++++ +.+| +|+|-.
T Consensus 12 v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~----g--~~~v~~s~dg~l~a~d~ 66 (369)
T 2hz6_A 12 LFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVE----E--PAFLPDPNDGSLYTLGS 66 (369)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----------CCEEECTTTCCEEEC--
T ss_pred EEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcC----C--CEEEEeCCCCEEEEEEC
Confidence 344444567888895 9999999998 66666665533 2 24554 6677 888843
No 68
>1daq_A Endoglucanase SS, CELS; cellulose degradation, cellulosome, calcium-binding, hydrolase; NMR {Clostridium thermocellum} SCOP: a.139.1.1 PDB: 1dav_A
Probab=24.45 E-value=20 Score=28.26 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=13.8
Q ss_pred CCCeeeeccCCCceeEE
Q 010629 230 EGGLHADINGDGVLDHV 246 (505)
Q Consensus 230 ~~~l~aDINgDGVlD~V 246 (505)
+...|.|+|+||.||..
T Consensus 2 ~~~~~GDvN~Dg~vn~~ 18 (71)
T 1daq_A 2 STKLYGDVNDDGKVNST 18 (71)
T ss_dssp CCCCSSCSSSSSCSSGG
T ss_pred CCCcccCCCCCCcCCHH
Confidence 35678999999999875
No 69
>4fl4_A Glycoside hydrolase family 9; structural genomics, montreal-kingston bacterial structural initiative, BSGI, dockerin; 2.80A {Clostridium thermocellum} PDB: 3p0d_A
Probab=23.86 E-value=16 Score=30.55 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=13.4
Q ss_pred CCeeeeccCCCceeEEEe
Q 010629 231 GGLHADINGDGVLDHVQA 248 (505)
Q Consensus 231 ~~l~aDINgDGVlD~V~a 248 (505)
..+|.|+|+||.||..-.
T Consensus 19 ~~~~GDvNgDG~Vn~~D~ 36 (88)
T 4fl4_A 19 GRHMGDVNDDGKVNSTDL 36 (88)
T ss_dssp --CTTCTTCSSCCSHHHH
T ss_pred CCccccCCCCCcCCHHHH
Confidence 467899999999987643
No 70
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=23.46 E-value=5.4e+02 Score=25.31 Aligned_cols=67 Identities=16% Similarity=0.316 Sum_probs=40.2
Q ss_pred ccEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecceEEEE
Q 010629 337 GDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVI 416 (505)
Q Consensus 337 ~D~vFL~s~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~il 416 (505)
.-.++|+++|.|=|......|+-+ .+..- +.....|....++ ..-.-+|.|+.+.++|
T Consensus 85 ~h~~~l~~~G~v~~wG~n~~GqLG-------~~~~~----------~~~~~~P~~v~~~-----~~i~~va~G~~hs~al 142 (423)
T 3mvd_K 85 MHNLVLTKSGDIYSFGCNDEGALG-------RDTSE----------DGSESKPDLIDLP-----GKALCISAGDSHSACL 142 (423)
T ss_dssp SEEEEEETTSCEEEEECCSSSTTC-------SCCCS----------TTSSSSCEECCCS-----SCEEEEEECSSEEEEE
T ss_pred CeEEEEeCCCeEEEeECCCCcCCC-------CCCcC----------CccccCCeEEcCC-----CCEEEEEcCcCeEEEE
Confidence 468999999999988765433311 11100 0022344433321 1223488999999999
Q ss_pred CCCCCEEEE
Q 010629 417 SPGGSILTS 425 (505)
Q Consensus 417 s~~G~vl~s 425 (505)
+.+|++..-
T Consensus 143 ~~~G~v~~w 151 (423)
T 3mvd_K 143 LEDGRVFAW 151 (423)
T ss_dssp ETTSCEEEE
T ss_pred eCCCeEEEE
Confidence 999988653
No 71
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=22.86 E-value=4.6e+02 Score=24.30 Aligned_cols=52 Identities=12% Similarity=0.126 Sum_probs=38.4
Q ss_pred cceEEEECC-CCCEEEEEeCCCCC---CcccEEeecCCCCcccEEEecCCe----EEEEE
Q 010629 410 DQEAVVISP-GGSILTSIDLPAPP---THALVCEDFSNDGLTDVILMTSNG----VYGFV 461 (505)
Q Consensus 410 e~~~~ils~-~G~vl~s~~Lp~pP---~ap~Iv~DfngDG~nDiIVvT~~G----iygfv 461 (505)
+..+.|.|. +|+.+.++..+.+. ..++....|+.||-+=|++.+.+| |+-|-
T Consensus 187 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d 246 (416)
T 2pm9_A 187 SNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWD 246 (416)
T ss_dssp SSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEE
T ss_pred CCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEe
Confidence 456888896 88888888876543 677888899999877677777775 55553
No 72
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=22.56 E-value=1.9e+02 Score=26.46 Aligned_cols=52 Identities=15% Similarity=0.266 Sum_probs=33.0
Q ss_pred ceEEEe-ecceEEEECCCCCEEEEEeCCCCCCc---ccEEeecCCCCcccEEEecCC
Q 010629 403 QMILAG-GDQEAVVISPGGSILTSIDLPAPPTH---ALVCEDFSNDGLTDVILMTSN 455 (505)
Q Consensus 403 ~~IlA~-Ge~~~~ils~~G~vl~s~~Lp~pP~a---p~Iv~DfngDG~nDiIVvT~~ 455 (505)
.+.++. +...+.++|++|+.+..+.+|..+.. .+.-..|+.|| +-|.|.|.+
T Consensus 245 ~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg-~~L~v~~~~ 300 (333)
T 2dg1_A 245 NLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGT-NQLIICSND 300 (333)
T ss_dssp CEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTS-CEEEEEEEC
T ss_pred CEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCC-CEEEEEeCc
Confidence 344444 34679999999999999988764211 23333455676 347777776
No 73
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=21.93 E-value=4.2e+02 Score=23.52 Aligned_cols=95 Identities=12% Similarity=0.278 Sum_probs=0.0
Q ss_pred EEEec--CceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCCcCeeeeeeEEeecccCCccceEEEeecc--eEEE
Q 010629 340 VFLTN--RGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQ--EAVV 415 (505)
Q Consensus 340 vFL~s--~G~vTs~~~~g~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~--~~~i 415 (505)
+++++ ++.|..|++.+ ...+.+........ +..+.......++++.... .+.+
T Consensus 177 l~v~~~~~~~i~~~~~~g-----~~~~~~~~~g~~~~------------------p~~i~~d~~G~l~v~~~~~~~~i~~ 233 (286)
T 1q7f_A 177 IFISDNRAHCVKVFNYEG-----QYLRQIGGEGITNY------------------PIGVGINSNGEILIADNHNNFNLTI 233 (286)
T ss_dssp EEEEEGGGTEEEEEETTC-----CEEEEESCTTTSCS------------------EEEEEECTTCCEEEEECSSSCEEEE
T ss_pred EEEEECCCCEEEEEcCCC-----CEEEEEccCCccCC------------------CcEEEECCCCCEEEEeCCCCEEEEE
Q ss_pred ECCCCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe-EEEE
Q 010629 416 ISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG-VYGF 460 (505)
Q Consensus 416 ls~~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~G-iygf 460 (505)
++++|+.+.++.. ..+..-|.-.-|+.||. |+|...++ |+.|
T Consensus 234 ~~~~g~~~~~~~~-~~~~~~~~~i~~~~~g~--l~vs~~~~~v~v~ 276 (286)
T 1q7f_A 234 FTQDGQLISALES-KVKHAQCFDVALMDDGS--VVLASKDYRLYIY 276 (286)
T ss_dssp ECTTSCEEEEEEE-SSCCSCEEEEEEETTTE--EEEEETTTEEEEE
T ss_pred ECCCCCEEEEEcc-cCCCCcceeEEECCCCc--EEEECCCCeEEEE
No 74
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=21.72 E-value=5.3e+02 Score=24.64 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=32.1
Q ss_pred cceEEEECC-CCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe-EEEE
Q 010629 410 DQEAVVISP-GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG-VYGF 460 (505)
Q Consensus 410 e~~~~ils~-~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~G-iygf 460 (505)
...+.++|. +++++++++++. |.-.-|+-||. .+.++..+ |+.|
T Consensus 285 ~~~v~viD~~t~~~v~~i~~~~-----p~~ia~spdg~--~l~v~n~~~v~v~ 330 (361)
T 2oiz_A 285 AAEIWVMDTKTKQRVARIPGRD-----ALSMTIDQQRN--LMLTLDGGNVNVY 330 (361)
T ss_dssp CSEEEEEETTTTEEEEEEECTT-----CCEEEEETTTT--EEEEECSSCEEEE
T ss_pred CceEEEEECCCCcEEEEEecCC-----eeEEEECCCCC--EEEEeCCCeEEEE
Confidence 347999997 999999999886 45556777886 55555544 5555
No 75
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=21.53 E-value=2.8e+02 Score=25.03 Aligned_cols=58 Identities=9% Similarity=0.099 Sum_probs=40.2
Q ss_pred cceEEEee-----cceEEEECC-CCCEEEEEeCCCCCCcccEEeecCCCC--cccEEEecCCe-EEEEE
Q 010629 402 QQMILAGG-----DQEAVVISP-GGSILTSIDLPAPPTHALVCEDFSNDG--LTDVILMTSNG-VYGFV 461 (505)
Q Consensus 402 ~~~IlA~G-----e~~~~ils~-~G~vl~s~~Lp~pP~ap~Iv~DfngDG--~nDiIVvT~~G-iygfv 461 (505)
.+.++|+| +..+.|.+. +|+......+++ ..++....|+.|+ -+=|++.+.+| |.-|-
T Consensus 30 ~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd 96 (357)
T 3i2n_A 30 SAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEK--AKPIKCGTFGATSLQQRYLATGDFGGNLHIWN 96 (357)
T ss_dssp SSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEE--SSCEEEEECTTCCTTTCCEEEEETTSCEEEEC
T ss_pred CceEEEecCccCCCcEEEEEeCCCCcccceeeecc--cCcEEEEEEcCCCCCCceEEEecCCCeEEEEe
Confidence 44677777 677888886 777766655533 5677888999986 34466667777 66663
No 76
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=20.76 E-value=3e+02 Score=24.59 Aligned_cols=57 Identities=18% Similarity=0.287 Sum_probs=37.8
Q ss_pred ceEEEe-ecceEEEECCC-CCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCC--eEEEEEEe
Q 010629 403 QMILAG-GDQEAVVISPG-GSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSN--GVYGFVQT 463 (505)
Q Consensus 403 ~~IlA~-Ge~~~~ils~~-G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~--Giygfv~~ 463 (505)
.+.++. +...+.+++++ |+++..+.+|. ..+.-.-|+.||. -|.|.+.+ +|+-|-..
T Consensus 238 ~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~---~~~~~i~~~~dg~-~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 238 NLLVANWGSSHIEVFGPDGGQPKMRIRCPF---EKPSNLHFKPQTK-TIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp CEEEEEETTTEEEEECTTCBSCSEEEECSS---SCEEEEEECTTSS-EEEEEETTTTEEEEEECS
T ss_pred CEEEEEcCCCEEEEEcCCCCcEeEEEeCCC---CCceeEEECCCCC-EEEEEeCCCCeEEEEeCC
Confidence 344443 56779999986 99998888764 2334444566762 26777766 78888644
No 77
>3iys_A Major capsid protein VP1; avian, polyomavirus, APV, icosahedral virus, virus; 11.30A {Budgerigar fledgling disease polyomavi}
Probab=20.62 E-value=2.3e+02 Score=28.97 Aligned_cols=67 Identities=27% Similarity=0.517 Sum_probs=39.9
Q ss_pred cCCcEEEEeccCceeEEEccCC-CeeEEEe--cCC--CCeeeeccCCCceeEEEeeecCCceeeeecCCcccccCceEEE
Q 010629 199 WVPNVVVAHQKEGIEAVHLASG-RTVCKLH--LQE--GGLHADINGDGVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVA 273 (505)
Q Consensus 199 ~~PNViVaH~~~GIEViHL~SG-rtlckL~--L~~--~~l~aDINgDGVlD~V~a~gg~~~e~~~~~g~~~~~~~C~ava 273 (505)
.+|-+|| |-||||+.+.|| .+++++- |.+ |. .||.=..+.+- -...+.. . ....-+|+.+|
T Consensus 14 ~vPklli---KGGVEVL~v~tg~DSit~IE~fLnPrmG~------~~g~S~~i~~~-~~~~~D~--p--~~~~lpcYS~A 79 (343)
T 3iys_A 14 QVPRLLV---KGGIEVLDVKSGPDSITTIEAYLQPRPGQ------KNGYSTVITVQ-AEGYQDA--P--HSTEVPCYSCA 79 (343)
T ss_pred cCCeeEE---ECCeEEEeeccCCCccEEEEEEEcCCcCC------CccccceeccC-CCCCCCC--C--CCCccceeeee
Confidence 5687877 899999999988 4777765 555 44 23321122211 1111100 0 02357999999
Q ss_pred EecCCC
Q 010629 274 TSGVPV 279 (505)
Q Consensus 274 tSGvP~ 279 (505)
.-.+|-
T Consensus 80 ~I~LP~ 85 (343)
T 3iys_A 80 RIPLPT 85 (343)
T ss_pred eccCCC
Confidence 998884
No 78
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=20.47 E-value=67 Score=27.98 Aligned_cols=51 Identities=20% Similarity=0.314 Sum_probs=32.0
Q ss_pred ceEEEECCCCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCeEEEEEEec
Q 010629 411 QEAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTR 464 (505)
Q Consensus 411 ~~~~ils~~G~vl~s~~Lp~pP~ap~Iv~DfngDG~nDiIVvT~~Giygfv~~~ 464 (505)
-.+.|.|.+|+++.+++|...+.. ...|.=||.+|==-.-.+|.|=|..+.
T Consensus 41 v~v~I~d~~G~~V~t~~~~~~~aG---~~~~~WDg~d~~G~~~~~G~Y~~~v~a 91 (138)
T 3c12_A 41 VNFEITDANGTFVKQLSVPASAAG---EVSFAWDGTDANGNRMAAGKYGITATQ 91 (138)
T ss_dssp EEEEEECSSCCEEEEEEEEESSSE---EEEEEECSBCTTSCBCCSEEEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEEcCCcCCc---eEEEEECCcCCCCCCCCCceEEEEEEE
Confidence 346788999999999998655443 356666666542111235666665543
Done!