Query 010630
Match_columns 505
No_of_seqs 527 out of 1632
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 10:55:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010630.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010630hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 100.0 1.6E-32 5.6E-37 269.1 35.3 386 28-486 23-426 (438)
2 1pw4_A Glycerol-3-phosphate tr 100.0 1.4E-34 4.7E-39 285.0 20.5 389 35-493 32-434 (451)
3 4aps_A DI-OR tripeptide H+ sym 100.0 3.9E-30 1.3E-34 256.1 27.6 402 31-497 13-476 (491)
4 2gfp_A EMRD, multidrug resista 100.0 4.4E-29 1.5E-33 239.4 23.3 354 36-477 5-361 (375)
5 4gc0_A D-xylose-proton symport 100.0 2.5E-28 8.5E-33 243.0 25.3 392 65-499 54-469 (491)
6 2cfq_A Lactose permease; trans 100.0 2.2E-28 7.4E-33 237.6 17.7 394 30-498 6-405 (417)
7 2xut_A Proton/peptide symporte 99.9 3.2E-25 1.1E-29 222.4 19.5 407 34-496 15-506 (524)
8 4aps_A DI-OR tripeptide H+ sym 99.5 2.2E-12 7.4E-17 127.9 20.2 185 285-494 13-198 (491)
9 1pw4_A Glycerol-3-phosphate tr 99.4 3.8E-12 1.3E-16 124.6 19.1 141 336-496 66-210 (451)
10 3o7q_A L-fucose-proton symport 99.4 3.2E-11 1.1E-15 117.5 21.5 114 336-465 65-178 (438)
11 2gfp_A EMRD, multidrug resista 99.4 1E-11 3.6E-16 118.3 15.4 142 336-498 39-180 (375)
12 2xut_A Proton/peptide symporte 99.3 3.2E-11 1.1E-15 120.5 18.8 182 285-491 12-197 (524)
13 4gc0_A D-xylose-proton symport 99.2 1E-11 3.5E-16 123.0 7.4 179 46-251 292-471 (491)
14 2cfq_A Lactose permease; trans 99.2 5.6E-11 1.9E-15 114.9 10.1 165 47-248 236-405 (417)
15 2g9p_A Antimicrobial peptide l 54.7 9.2 0.00031 18.4 1.9 14 351-364 2-15 (26)
16 2dw3_A Intrinsic membrane prot 26.3 1.4E+02 0.0049 19.8 4.7 32 220-251 31-62 (77)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=1.6e-32 Score=269.15 Aligned_cols=386 Identities=12% Similarity=0.051 Sum_probs=272.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHH
Q 010630 28 VPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCG 107 (505)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~ 107 (505)
..++.+..+....+...+......+.+|.+.+++|.|..+.+++.+++.++..+++++.|+++| |+|||+.++..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~d----r~g~r~~l~~~- 97 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMK----KLSYKAGIITG- 97 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHH----HSCHHHHHHHH-
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH----HhcchHHHHHH-
Confidence 3444555555555666666677788889999999999999999999999999999999999999 99999988874
Q ss_pred HHHHHHHHHHH---hcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHH
Q 010630 108 AISIAVAVLLI---GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSL 184 (505)
Q Consensus 108 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 184 (505)
.+...++.++. .+++++ +.+++.+++.|++.+...+...+++.|++|+++|+ +++++.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~---------------~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~ 160 (438)
T 3o7q_A 98 LFLYALGAALFWPAAEIMNY---------------TLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGH--FRLNLAQT 160 (438)
T ss_dssp HHHHHHHHHHHHHHHHTTCH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccH---------------HHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHH--HHHHHHHH
Confidence 44455555555 555555 78889999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHhhcccccc-cccccccc------------ccccccccccchhHHHHHHHHHHHHHHHHhhhc-cccCCCCC
Q 010630 185 FMAVGNILGYATGSFSG-WFKILPFT------------LTSACNVDCANLKSAFFLDVIFIAITTCISASA-AHEVPLGS 250 (505)
Q Consensus 185 ~~~~g~~ig~~l~~~~~-~~~~~~~~------------~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-~~e~~~~~ 250 (505)
..++|..+++.+++.+. ... ... ..........+||+.|++.+++..+..++.++. .||++++.
T Consensus 161 ~~~~g~~~g~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 238 (438)
T 3o7q_A 161 FNSFGAIIAVVFGQSLILSNV--PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN 238 (438)
T ss_dssp HHHHHHHHHHHHTTHHHHTSS--CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC
T ss_pred HHHHHHHHHHHHHHHHHhccc--ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc
Confidence 99999999999988733 111 000 000000000128999987776665555444332 23332211
Q ss_pred CCCCCCCcccCCCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHH-HHHHHhCCCCCCcccccc
Q 010630 251 HDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDW-MGREIYGGEPNEGQNYAT 329 (505)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 329 (505)
+++ ++ +++..++.++.+++ |.++...+..++..........+.+.| +. +.++.+.
T Consensus 239 ~~~---------~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~-------- 294 (438)
T 3o7q_A 239 HSD---------AK----QGSFSASLSRLARI--RHWRWAVLAQFCYVGAQTACWSYLIRYAVE-EIPGMTA-------- 294 (438)
T ss_dssp CCC---------SS----TTSHHHHHHHHTTC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSTTCCH--------
T ss_pred ccc---------cc----ccchhhhHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccCCcch--------
Confidence 000 00 11112344556666 778887777777777777777788888 53 3333222
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHH
Q 010630 330 GVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIF 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (505)
...........+...++.++.+++.||+|||+.+..+.++.+++.++..+.. +.+ ..+..
T Consensus 295 --~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~-~~~~~ 354 (438)
T 3o7q_A 295 --GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG-----------------GHV-GLIAL 354 (438)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC-----------------HHH-HHHHH
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC-----------------CcH-HHHHH
Confidence 1122334445777888999999999999999999988888877776655541 222 34445
Q ss_pred HHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHH
Q 010630 410 TILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGG 486 (505)
Q Consensus 410 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 486 (505)
.+.|++.+...+..+++..|..|+ + ++.+.++.. ...+++.++|.+.|.+.|..| ++...|.+.+++.++..
T Consensus 355 ~~~g~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 355 TLCSAFMSIQYPTIFSLGIKNLGQ--D-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG-NIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCGG--G-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT-SSGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc--c-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHH
Confidence 777888888888888998998886 4 777777766 667999999999999999985 34556665554444433
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=1.4e-34 Score=285.01 Aligned_cols=389 Identities=13% Similarity=0.085 Sum_probs=283.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHH
Q 010630 35 KVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114 (505)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~ 114 (505)
......+...+......+.+|.+.+++ .+..+.+++.+++.++..++++++|+++| |+|||+.++. +.+...++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~g~r~~l~~-~~~~~~~~ 105 (451)
T 1pw4_A 32 GIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSD----RSNPRVFLPA-GLILAAAV 105 (451)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHH----HSCHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHH----hcCchHHHHH-HHHHHHHH
Confidence 333344444455555667788888889 99999999999999999999999999999 9999987777 55556666
Q ss_pred HHHHhc----ccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHH
Q 010630 115 VLLIGL----SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (505)
Q Consensus 115 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (505)
.+++.+ ++++ +.+++++++.|++.+...+...+++.|++|+++|+ +++++.....++|.
T Consensus 106 ~~~~~~~~~~~~~~---------------~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~g~ 168 (451)
T 1pw4_A 106 MLFMGFVPWATSSI---------------AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERG--GIVSVWNCAHNVGG 168 (451)
T ss_dssp HHHHHHCHHHHSSS---------------SHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhccccH---------------HHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhh--HHHHHHHHHHHHHH
Confidence 666666 6665 67888899999999999999999999999999999 99999999999999
Q ss_pred HHHhhccccccccccccccccccccccccc-hhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCC---CCCc
Q 010630 191 ILGYATGSFSGWFKILPFTLTSACNVDCAN-LKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGH---EQSS 266 (505)
Q Consensus 191 ~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~---~~~~ 266 (505)
++++.+++.+.... + ||+.|++.+++.++..++.++.+||++++...+++++.+++. .+.+
T Consensus 169 ~~g~~~~~~l~~~~---------------g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (451)
T 1pw4_A 169 GIPPLLFLLGMAWF---------------NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEK 233 (451)
T ss_dssp TSHHHHHHHHHHHT---------------CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC--------
T ss_pred HHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhh
Confidence 99999987632211 6 999999998888877777777888876654322211111110 0000
Q ss_pred chHHHHHHH--HHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHH
Q 010630 267 DVHEAFLWE--LFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVV 344 (505)
Q Consensus 267 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (505)
++++...++ .++.+++ |.++...+..++..........+.+.|+.+ .++.+ ............++
T Consensus 234 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~----------~~~~~~~~~~~~~~ 300 (451)
T 1pw4_A 234 AEQELTAKQIFMQYVLPN--KLLWYIAIANVFVYLLRYGILDWSPTYLKE-VKHFA----------LDKSSWAYFLYEYA 300 (451)
T ss_dssp -----CCTHHHHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHBTT-BSCCC----------HHHHHHHHHHHHHH
T ss_pred hhcccccccchHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCC----------HHHHHHHHHHHHHH
Confidence 001111111 2334455 788888888888777777777778877632 12211 11122334446777
Q ss_pred HHHHHHHHHHHHHHh--cchHHHHHHHHHHH-HHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhh
Q 010630 345 LGITSVLMEKLCRKW--GAGFIWGISNILMA-LCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYS 421 (505)
Q Consensus 345 ~~i~~~~~g~l~~r~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 421 (505)
.+++.++.+++.||+ ++|+.+..+..+.. ++++++.+. +. .+.+...+...+.|++.+...+
T Consensus 301 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~g~~~~~~~~ 365 (451)
T 1pw4_A 301 GIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN--------------PA-GNPTVDMICMIVIGFLIYGPVM 365 (451)
T ss_dssp HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC--------------CT-TCHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh--------------cc-cCHHHHHHHHHHHHHHHhchHH
Confidence 888999999999999 99988877766655 444443332 11 1355566677778888888777
Q ss_pred chhHhHhhhhcccccchhHHHHHHHHHHHH-HHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhc
Q 010630 422 VPYALVSIRTESLGLGQGLSLGVLNLAIVI-PQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAI 493 (505)
Q Consensus 422 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (505)
..++++.|..|+ +++|+++|+.+....+ +..++|.+.|.+.+..| +...|++.+++.+++.++.+...
T Consensus 366 ~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 366 LIGLHALELAPK--KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG--WDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHTSCT--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC--SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhch--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999998 9999999999999999 99999999999999876 67778887777777766655543
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=3.9e-30 Score=256.05 Aligned_cols=402 Identities=12% Similarity=0.050 Sum_probs=262.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHH-H-----hCCCchhHHHHHHHhhhhhhhcccccceeccccCCC-CCCcchh
Q 010630 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQ-E-----LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSR-FGRRRPF 103 (505)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r-~Grr~~~ 103 (505)
+..+......+...+.++....+++.|++ + +|.+..+.+++.+++.++..+++++.|+++| | +|||+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~~g~r~~~ 88 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVAD----RIIGARPAV 88 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTSCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccccchHHH
Confidence 34555555566666677777777777764 4 8999999999999999999999999999999 9 8999888
Q ss_pred HHHHHHHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHH
Q 010630 104 IVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFS 183 (505)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 183 (505)
+. +.+...++.+++.++++. +.+++++++.|++.+...+...+++.|++|+++|+.+.++++.+
T Consensus 89 ~~-~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 152 (491)
T 4aps_A 89 FW-GGVLIMLGHIVLALPFGA---------------SALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFV 152 (491)
T ss_dssp HH-HHHHHHHHHHHHHSCCST---------------THHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHhhhH---------------HHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHH
Confidence 77 555566666677777665 67888999999999999999999999999998844227888888
Q ss_pred HHHHHHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCC
Q 010630 184 LFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHE 263 (505)
Q Consensus 184 ~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 263 (505)
...++|..+++.+++.+.... +|++.|++.++..++..++..+..++..++..++.+++. +.
T Consensus 153 ~~~~~g~~~~~~~~~~l~~~~---------------g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~- 214 (491)
T 4aps_A 153 FGINLGAFIAPLIVGAAQEAA---------------GYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPL--AP- 214 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS---------------CHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCC--SH-
T ss_pred HHHHHHHHHHHHHHHHHHhhh---------------hHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCcc--cc-
Confidence 999999999999988743322 899999998776666555554443433222111111100 00
Q ss_pred CCcchHHHHHH------------------------------------------------HHHH--HHhcccHHHHHHHHH
Q 010630 264 QSSDVHEAFLW------------------------------------------------ELFG--TFRYFSGTIWIILIV 293 (505)
Q Consensus 264 ~~~~~~~~~~~------------------------------------------------~~~~--~~~~~~~~~~~~~~~ 293 (505)
++.++..+ +... ..++.....+.+.+.
T Consensus 215 ---~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (491)
T 4aps_A 215 ---EEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIA 291 (491)
T ss_dssp ---HHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHH
T ss_pred ---chhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 00000000 0000 001000112333333
Q ss_pred HHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH-----HH
Q 010630 294 TALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWG-----IS 368 (505)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~-----~~ 368 (505)
.++.+........+.+.|.. +.++.+.... + .......+...++.++.+++.||++||+... .+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~ 360 (491)
T 4aps_A 292 AVLFWAIEEQGSVVLATFAA-ERVDSSWFPV-----S-----WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVG 360 (491)
T ss_dssp HHHHHHHHGGGGTHHHHHHH-HSCCCSSSCS-----G-----GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHH-HHhccCccCH-----H-----HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHH
Confidence 44444444444444555553 3233222111 1 1122345566677888999999999886544 66
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHH
Q 010630 369 NILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLA 448 (505)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 448 (505)
..+.++++.++......... +...+.+...+..++.|++.+...+..++++.|..|+ +.+|++.|+.+..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~ 430 (491)
T 4aps_A 361 LMFAGLSFLLMAIPGALYGT--------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK--AFNSQMMSMWFLS 430 (491)
T ss_dssp HHHHHHHHTTTHHHHHHCCC--------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT--TCSSSSTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCC--------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH--HHHHHHHHHHHHH
Confidence 66666666655554211110 0111345566777888888888888889999999999 9999999999999
Q ss_pred HHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCC
Q 010630 449 IVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSS 497 (505)
Q Consensus 449 ~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (505)
..+|..+++.+.+.+.+. + +...|...+++.+++.++.+...++.+
T Consensus 431 ~~~g~~i~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 431 SSVGSALNAQLVTLYNAK-S--EVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp HHHHHHHHHHHGGGGGGS-S--TTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHhcc-c--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988775 2 456777777777777766666655443
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.97 E-value=4.4e-29 Score=239.43 Aligned_cols=354 Identities=14% Similarity=0.059 Sum_probs=256.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHH
Q 010630 36 VASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAV 115 (505)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~ 115 (505)
+....+...+......+.+|.+.+++|.|+.+.+++.++..++..+++++.|+++| |+|||+.++. +.....++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~~~~~~~~~ 79 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISD----RVGRRPVILV-GMSIFMLAT 79 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHT----TSCCCCCCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCchhHHH-HHHHHHHHH
Confidence 34444555567777778888899999999999999999999999999999999999 9999999887 445555666
Q ss_pred HHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhh
Q 010630 116 LLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYA 195 (505)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~ 195 (505)
+...+.+++ +.+++.+++.|++.+...+...+++.|++|+++|+ +++++.+...++|..+++.
T Consensus 80 ~~~~~~~~~---------------~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~ 142 (375)
T 2gfp_A 80 LVAVTTSSL---------------TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLR--HANSLLNMGILVSPLLAPL 142 (375)
T ss_dssp HHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCC--SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccH---------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHH--HHHHHHHHHHHHHHHhhHH
Confidence 666666555 78888999999999999999999999999999999 9999999999999999999
Q ss_pred ccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHH
Q 010630 196 TGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWE 275 (505)
Q Consensus 196 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (505)
+++++.... +||+.|.+.+++..+..++..+.+||+++++++++ +. + ++
T Consensus 143 ~~~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-------~---~~ 191 (375)
T 2gfp_A 143 IGGLLDTMW---------------NWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRT------RL-------L---TS 191 (375)
T ss_dssp HHHHSSCHH---------------HHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC------CT-------T---TC
T ss_pred HHHHHHHhc---------------cHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccc------cH-------H---HH
Confidence 988743322 89999998887777776666677777654322110 00 0 01
Q ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 010630 276 LFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKL 355 (505)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l 355 (505)
.++.+|+ |.++...+..++..........+.+.|+.+.. + + +............+...++.++.+++
T Consensus 192 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g--------~--~~~~~g~~~~~~~~~~~~~~~~~~~l 258 (375)
T 2gfp_A 192 YKTLFGN--SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVL-G--------L--SSMTVSILFILPIPAAFFGAWFAGRP 258 (375)
T ss_dssp STHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHH-H--------H--HHHHHHHHHHTHHHHHHHHHHHHHTT
T ss_pred HHHHhcC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------C--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233445 67777777777777777777777777764322 1 1 11111222334567777888888999
Q ss_pred HHHhcchHHHHHHHHH-HHHHHH--HHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhc
Q 010630 356 CRKWGAGFIWGISNIL-MALCFL--AMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTE 432 (505)
Q Consensus 356 ~~r~g~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 432 (505)
.||++++. ..+..+ ...+.. ...... .+ +.+...+...+.|++.+...+...++..|..|
T Consensus 259 ~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p 321 (375)
T 2gfp_A 259 NKRFSTLM--WQSVICCLLAGLLMWIPDWFG---VM------------NVWTLLVPAALFFFGAGMLFPLATSGAMEPFP 321 (375)
T ss_dssp TTHHHHHH--HHHHHHHHHTSSSSSHHHHHH---HH------------HHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHhhhc---cc------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 99887732 222222 222222 111110 00 34556667778888899888899999999987
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHH
Q 010630 433 SLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAV 477 (505)
Q Consensus 433 ~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~ 477 (505)
+++|++.|+.+....++..++|.+.|.+.+..+ +...+..
T Consensus 322 ---~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~--~~~~~~~ 361 (375)
T 2gfp_A 322 ---FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ--GSLGLLM 361 (375)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH--HHHHHHH
T ss_pred ---cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc--ccHHHHH
Confidence 579999999999999999999999999988754 3344443
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.96 E-value=2.5e-28 Score=243.03 Aligned_cols=392 Identities=15% Similarity=0.099 Sum_probs=239.3
Q ss_pred chhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCC---CCCcchhHHH
Q 010630 65 HAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR---GDFRPRAIAV 141 (505)
Q Consensus 65 ~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 141 (505)
..+.|++.+.+.++..++++++|+++| |+|||+.+++.. ++..++.++.++++......... ......+++.
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laD----r~GRk~~l~~~~-~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSN----RFGRRDSLKIAA-VLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPE 128 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHH----HTCHHHHHHHHH-HHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCHHHHHHHH-HHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHH
Confidence 456788999999999999999999999 999999888844 44555555555432210000000 0012344588
Q ss_pred HHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccccccccccccccccccch
Q 010630 142 FVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANL 221 (505)
Q Consensus 142 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (505)
++++|++.|++.+...+...++++|+.|+++|+ +..++.+....+|.++++.++......... ......+|
T Consensus 129 l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~ 199 (491)
T 4gc0_A 129 FVIYRIIGGIGVGLASMLSPMYIAELAPAHIRG--KLVSFNQFAIIFGQLLVYCVNYFIARSGDA-------SWLNTDGW 199 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHH--HHHHHHHHHHHHHHHHHHHHHHHHHTTSCT-------TTTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhh--hhHHhhhhhhhhhhhhhhhcchhhcccccc-------ccccchhh
Confidence 999999999999999999999999999999999 999999999999998888776542111000 00011256
Q ss_pred hHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCC----------CcchHHHHHHHH-----HHHHhcccHH
Q 010630 222 KSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQ----------SSDVHEAFLWEL-----FGTFRYFSGT 286 (505)
Q Consensus 222 ~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~-----~~~~~~~~~~ 286 (505)
+..+.+..+. .+..++..++.||+|+....+.++++.++..+ +..+.+....+. .....+ .+.
T Consensus 200 ~~~~~~~~~~-~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 277 (491)
T 4gc0_A 200 RYMFASECIP-ALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFG-VGV 277 (491)
T ss_dssp HHHHHTTHHH-HHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSC-CTH
T ss_pred HHHhhhhhhh-hhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhc-ccH
Confidence 7666655543 44445556778998765433322221110000 000000000000 011111 123
Q ss_pred HHHHHHHHHHHHH-hhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Q 010630 287 IWIILIVTALTWL-GWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIW 365 (505)
Q Consensus 287 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~ 365 (505)
.........+.+. +......|.+... +.. +.+ ...........++...++.++.+++.||+|||+.+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~ 345 (491)
T 4gc0_A 278 IVIGVMLSIFQQFVGINVVLYYAPEVF-KTL-GAS----------TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ 345 (491)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH-HHS-SCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHhcchHHH-Hhc-CCC----------ccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchh
Confidence 3333333333332 3333343444333 211 100 01112223345677788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHH-HhhchhHhHhhhhcccccchhHHHHH
Q 010630 366 GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAI-TYSVPYALVSIRTESLGLGQGLSLGV 444 (505)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~ 444 (505)
..+.....++++.+...... .. ..+..++...+...+++. ..++.+.+.+|.+|. +.|+++.|+
T Consensus 346 ~~~~~~~~~~~~~l~~~~~~-----------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt--~~R~~~~g~ 410 (491)
T 4gc0_A 346 IIGALGMAIGMFSLGTAFYT-----------QA--PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN--AIRGKALAI 410 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-----------TC--CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCT--TTHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhc-----------cc--chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCH--hHHHHHHHH
Confidence 98888887777666544211 11 112222222222222222 235678899999999 999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhhc----CCCchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 010630 445 LNLAIVIPQIVVSMGSGPWDQLFG----GGNSPAFAVGGISALAGGLIAILAIPRSSAQ 499 (505)
Q Consensus 445 ~~~~~~~~~~i~~~~~g~l~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (505)
.+....+++++++.+.+.+.+... .+....|++.+++++++.++.+++.||+|.+
T Consensus 411 ~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 411 AVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 999999999999988877654321 1134567788888888888888999988765
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.96 E-value=2.2e-28 Score=237.63 Aligned_cols=394 Identities=13% Similarity=0.101 Sum_probs=234.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHH
Q 010630 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (505)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~ 108 (505)
.++.+......+.....+....+++|.+++ ++|.|+.+.|++.++..++..++++++|+++| |+|||++++....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsD----r~Grr~~l~~~~~ 81 (417)
T 2cfq_A 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSD----KLGLRKYLLWIIT 81 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHT----TSTTCCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcchHHHHHHHH
Confidence 344555555445555566666788888875 58999999999999999999999999999999 9999998887444
Q ss_pred HHHHH--HHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccc--cccchhhHhHHHHH
Q 010630 109 ISIAV--AVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK--DHRRTRVANAYFSL 184 (505)
Q Consensus 109 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~ 184 (505)
+..+. ......+.+... .....++.+.+++.+...+...+...++.++ ++++ ...+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~ 145 (417)
T 2cfq_A 82 GMLVMFAPFFIFIFGPLLQ--------------YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSN--FEFGRARM 145 (417)
T ss_dssp HTTSCHHHHHHHTHHHHHH--------------TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHT--CCHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcc--cchHHHHH
Confidence 33221 111111111100 0011233333333333333333444444443 2344 55666666
Q ss_pred HHHHHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCC
Q 010630 185 FMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQ 264 (505)
Q Consensus 185 ~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 264 (505)
..++|..+++.+++++.. .+|++.|++.++..++..+..++..||+++.. ++ + +++++ ++
T Consensus 146 ~~~~g~~~~~~l~~~l~~----------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~-~~~~~-~~ 205 (417)
T 2cfq_A 146 FGCVGWALGASIVGIMFT----------------INNQFVFWLGSGCALILAVLLFFAKTDAPSSA-TV-A-NAVGA-NH 205 (417)
T ss_dssp STTTHHHHHHHHHHHHHH----------------HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSS-CS-S-SSSSS-CC
T ss_pred HHHHHHHHHHHHHHHHHH----------------hchhHHHHHHHHHHHHHHHHHHHcCccccccc-cc-c-ccccc-cc
Confidence 677888888887766211 16888888766554333333322233332111 10 0 00000 00
Q ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHH
Q 010630 265 SSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVV 344 (505)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (505)
+ + ...++.++.+++ |.++...+..+.....+..+....+.|+. +.++.. +.+.........+..+.
T Consensus 206 ~-~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~g~~~~~~~~~ 271 (417)
T 2cfq_A 206 S-A---FSLKLALELFRQ--PKLWFLSLYVIGVSCTYDVFDQQFANFFT-SFFATG-------EQGTRVFGYVTTMGELL 271 (417)
T ss_dssp C-C---CCHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTSSSH-------HHHTHHHHHHHHHHHHH
T ss_pred c-c---ccHHHHHHHhcC--CchhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcc-------CCChhHHHHHHHHHHHH
Confidence 0 0 112344556666 77766655444433333333334455553 222100 00111111223334566
Q ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchh
Q 010630 345 LGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPY 424 (505)
Q Consensus 345 ~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 424 (505)
.+++.++.+++.||+|||+.+..+..+.+++++...+. + +.+..++...+.+++.+...+..+
T Consensus 272 ~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~--------------~---~~~~~~~~~~l~~~~~~~~~~~~~ 334 (417)
T 2cfq_A 272 NASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--------------T---SALEVVILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC--------------C---SHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh--------------c---cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999999999999888777776665544332 1 234455555556666666666667
Q ss_pred HhHhhhhcccccchhHHHHH-HHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCCC
Q 010630 425 ALVSIRTESLGLGQGLSLGV-LNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSA 498 (505)
Q Consensus 425 ~~~~~~~~~~~~~~g~~~g~-~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (505)
.++.|..|+ +.+|++++. ++....+|+.++|.+.|.+.+..| +...|.+.+++.+++.++.+...||+++
T Consensus 335 ~~~~~~~p~--~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g--~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 335 KYITSQFEV--RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG--FQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHSCH--HHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH--HHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHHCCH--HHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 899999999 999999998 488889999999999999999765 5667888788878777666665665443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.93 E-value=3.2e-25 Score=222.42 Aligned_cols=407 Identities=11% Similarity=0.092 Sum_probs=230.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHH-HHhC------CCchhHHHHHHHhhhhhhhcccccceeccccCCCC-CCcchhHH
Q 010630 34 LKVASVAGGIQFGWALQLSLLTPYV-QELG------IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRF-GRRRPFIV 105 (505)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g------~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~-Grr~~~~~ 105 (505)
+.+....+...++++....+++.++ +++| .+..+.+++.+++.++..+++++.|+++| |+ |||+.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~~g~r~~~~~ 90 (524)
T 2xut_A 15 PYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIAD----RFFGKYNTILW 90 (524)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHT----TSSCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcchHHHHH
Confidence 3344444555566666667777776 6689 99999999999999999999999999999 99 99998877
Q ss_pred HHHHHHHHHHHHHhccc-ccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHH---
Q 010630 106 CGAISIAVAVLLIGLSA-DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAY--- 181 (505)
Q Consensus 106 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--- 181 (505)
+.+...++.++..+++ +. +.+++.+++.|++.+...+...+++.|++|+++|+ ++.+.
T Consensus 91 -~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~ 152 (524)
T 2xut_A 91 -LSLIYCVGHAFLAIFEHSV---------------QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKS--LAQKAFDM 152 (524)
T ss_dssp -HHHHHHHHHHHHHHTSSCH---------------HHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTT--HHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhcccH---------------HHHHHHHHHHHHhccccchhHHHHHHHHcCccchH--HHHHHHHH
Confidence 4455556666666655 54 77788899999999999999999999999999997 65555
Q ss_pred HHHHHHHHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccC
Q 010630 182 FSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEG 261 (505)
Q Consensus 182 ~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 261 (505)
.....++|..+++.+++.+.... +|++.|++.+++.++..++..+..++.++.+.++++..+..+
T Consensus 153 ~~~~~~~g~~~g~~~~~~l~~~~---------------g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (524)
T 2xut_A 153 FYFTINFGSFFASLSMPLLLKNF---------------GAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLP 217 (524)
T ss_dssp HHHHHHHHHHHHHHTSTHHHHTS---------------CHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHhccc---------------cHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHH
Confidence 88899999999999988743222 899999988877665555443333322211111100000000
Q ss_pred C-----CCCc-chHH-HHHHH-----------------------------------------HHH--------HHhcccH
Q 010630 262 H-----EQSS-DVHE-AFLWE-----------------------------------------LFG--------TFRYFSG 285 (505)
Q Consensus 262 ~-----~~~~-~~~~-~~~~~-----------------------------------------~~~--------~~~~~~~ 285 (505)
. ++.. +.+. ....+ ..+ ..++ .+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 296 (524)
T 2xut_A 218 VIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDG-VR 296 (524)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTT-TT
T ss_pred HHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHH-HH
Confidence 0 0000 0000 00000 000 0011 12
Q ss_pred HHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHH----HHhcc
Q 010630 286 TIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLC----RKWGA 361 (505)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~----~r~g~ 361 (505)
..+............+.....+.+.+. ....+.+... + ...+ .......+...+...+.+++. ||.++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (524)
T 2xut_A 297 SVLRILVLFALVTPFWSLFDQKASTWI-LQANDMVKPQ---W---FEPA-MMQALNPLLVMLLIPFNNFVLYPAIERMGV 368 (524)
T ss_dssp THHHHHHHHTTSHHHHTTTSSTTTHHH-HHHHHSCCCS---S---SCHH-HHHTTSGGGHHHHGGGTTTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhH-HhHHhcCCCe---e---ecHH-HHHHHHHHHHHHhHHHHHhhhHHHHHhcCC
Confidence 221111111110000111111111111 1111111100 0 0111 111112223333444444432 44432
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccc
Q 010630 362 ----GFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLG 437 (505)
Q Consensus 362 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 437 (505)
++.+..+.++.+++++++........+ +...+.+..++..++.|++.+...+..++++.|..|+ +.
T Consensus 369 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~--~~ 438 (524)
T 2xut_A 369 KLTALRKMGAGIAITGLSWIVVGTIQLMMDG--------GSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPK--AM 438 (524)
T ss_dssp --CCHHHHHTHHHHHHHHHHTTTTTTTTTTT--------TCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCT--TC
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH--HH
Confidence 345556666666666554443100000 0011345566778888999998888899999999999 99
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcC--------CC-chHHHHHHHHHHHHHHHHHHhccCC
Q 010630 438 QGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGG--------GN-SPAFAVGGISALAGGLIAILAIPRS 496 (505)
Q Consensus 438 ~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (505)
+|+++|+.++...+|+.++|.+.|.+.+..+. +. ...|.+.+++.+++.++.+++.++.
T Consensus 439 ~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (524)
T 2xut_A 439 KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSY 506 (524)
T ss_dssp CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998874210 01 1225666666666665555554443
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.47 E-value=2.2e-12 Score=127.89 Aligned_cols=185 Identities=10% Similarity=0.072 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH-hcchH
Q 010630 285 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK-WGAGF 363 (505)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r-~g~~~ 363 (505)
+.++......++..++++....+.+.|+.+..... +++.......+......+...++.++.|+++|| +|||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTG------DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 56677777777777777777777788875442100 011111122233445677888999999999999 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHH
Q 010630 364 IWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLG 443 (505)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 443 (505)
.+..+.++.+++.++..+.+ +.+.+++..++.|++.+...+...+++.|.+|++++.|+.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 149 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPF-----------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFS 149 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCC-----------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh-----------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeeh
Confidence 99999998888887766542 3566777888899999999999999999999984444888999
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhcc
Q 010630 444 VLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 494 (505)
Q Consensus 444 ~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (505)
..+....+|..++|.+++.+.+..| +...|.+.++..+++.++.....+
T Consensus 150 ~~~~~~~~g~~~~~~~~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 150 IFVFGINLGAFIAPLIVGAAQEAAG--YHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999866 667777777766666655554433
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.44 E-value=3.8e-12 Score=124.63 Aligned_cols=141 Identities=13% Similarity=0.052 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH----HHHHhhhccccCCCCCCChhHHHHHHHHHH
Q 010630 336 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLI----LYYVAIHMDYRGHDLPPNGIVIAALIIFTI 411 (505)
Q Consensus 336 ~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (505)
+......+...++.++.|+++||+|||+.+.++.++.+++.++..+ .. +.+.+++..++
T Consensus 66 ~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~l 128 (451)
T 1pw4_A 66 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS-----------------SIAVMFVLLFL 128 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHS-----------------SSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccc-----------------cHHHHHHHHHH
Confidence 3344567778889999999999999999999999999998888877 42 35667778889
Q ss_pred HhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHH
Q 010630 412 LGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAIL 491 (505)
Q Consensus 412 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 491 (505)
.|++.+...+...+++.|.+|+ ++|++++|+.+....+|..++|.+++.+.+..| ++...|++.+++.++..++.++
T Consensus 129 ~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~w~~~f~~~~~~~~~~~~~~~~ 205 (451)
T 1pw4_A 129 CGWFQGMGWPPCGRTMVHWWSQ--KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN-DWHAALYMPAFCAILVALFAFA 205 (451)
T ss_dssp HHHHHHHTHHHHHHHHHTTCTT--THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC-CSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHCCc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998 999999999999999999999999999888764 2456677777776666666656
Q ss_pred hccCC
Q 010630 492 AIPRS 496 (505)
Q Consensus 492 ~~~~~ 496 (505)
..||+
T Consensus 206 ~~~~~ 210 (451)
T 1pw4_A 206 MMRDT 210 (451)
T ss_dssp HCCCS
T ss_pred hccCC
Confidence 65554
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.39 E-value=3.2e-11 Score=117.51 Aligned_cols=114 Identities=11% Similarity=-0.106 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhH
Q 010630 336 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 415 (505)
Q Consensus 336 ~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 415 (505)
+......+...++.++.|+++||+|||+.+..+.++.+++.++...... . + +.+.+++..++.|++
T Consensus 65 ~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---~--------~---~~~~l~~~~~l~G~~ 130 (438)
T 3o7q_A 65 LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE---I--------M---NYTLFLVGLFIIAAG 130 (438)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH---T--------T---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc---c--------c---cHHHHHHHHHHHHhh
Confidence 3344467777889999999999999999999999999888887733210 0 1 467788888999999
Q ss_pred HHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHh
Q 010630 416 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQ 465 (505)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~ 465 (505)
.+...+...+++.|..|+ ++|++++++.+....+|..++|.+++.+.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 178 (438)
T 3o7q_A 131 LGCLETAANPFVTVLGPE--SSGHFRLNLAQTFNSFGAIIAVVFGQSLIL 178 (438)
T ss_dssp HHHHHHHHHHHHHHSSCS--TTHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHhhhhHHHHHHHHcCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999 999999999999999999999999999983
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.36 E-value=1e-11 Score=118.31 Aligned_cols=142 Identities=9% Similarity=0.079 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhH
Q 010630 336 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 415 (505)
Q Consensus 336 ~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 415 (505)
+......+...++.++.|+++||+|||+.+..+..+.+++.++..+.+ +.+..++...+.|++
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~l~g~~ 101 (375)
T 2gfp_A 39 SVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS-----------------SLTVLIAASAMQGMG 101 (375)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHH
Confidence 334446777888999999999999999999999999988888877764 567778888899999
Q ss_pred HHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccC
Q 010630 416 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 495 (505)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (505)
.+...+...+++.|..|+ ++|+++++..+....+|..++|.+++.+.+..| +...|.+.++..++..+...+..||
T Consensus 102 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (375)
T 2gfp_A 102 TGVGGVMARTLPRDLYER--TQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN--WRACYLFLLVLCAGVTFSMARWMPE 177 (375)
T ss_dssp HHHHHHHHHHHHHHHHHT--SSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH--HHHHHHHHHHHHHHHHCCCCCSSCC
T ss_pred HHhhhhhHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 999999999999999998 899999999999999999999999999988765 5566777666666665544455555
Q ss_pred CCC
Q 010630 496 SSA 498 (505)
Q Consensus 496 ~~~ 498 (505)
+++
T Consensus 178 ~~~ 180 (375)
T 2gfp_A 178 TRP 180 (375)
T ss_dssp CST
T ss_pred cCC
Confidence 443
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.34 E-value=3.2e-11 Score=120.51 Aligned_cols=182 Identities=9% Similarity=0.017 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh-cchH
Q 010630 285 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW-GAGF 363 (505)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~-g~~~ 363 (505)
+.++.+.+..++...+.+....+.+.|+.++ ++.... .+. ......+......+...++.++.|+++||+ |||+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~--~~~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~ 86 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTA-LLLSIP--EEL--RGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN 86 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHS-CSSCCS--SST--TTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccc--ccc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 5566666777777777777777778777533 330000 001 111112334446777788899999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHH
Q 010630 364 IWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLG 443 (505)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 443 (505)
.+.++.++.+++.++..+. +. +.+.+++..++.|++.+...+...+++.|.+|+ ++|++..+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~--------------~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~r~~~~~ 148 (524)
T 2xut_A 87 TILWLSLIYCVGHAFLAIF--------------EH--SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ--SNKSLAQK 148 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHT--------------SS--CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCST--TTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh--------------cc--cHHHHHHHHHHHHHhccccchhHHHHHHHHcCc--cchHHHHH
Confidence 9999988888888776655 20 256677778888999999889999999999998 77876555
Q ss_pred H---HHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHH
Q 010630 444 V---LNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAIL 491 (505)
Q Consensus 444 ~---~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 491 (505)
. .+....+|..++|.+++.+.+..| +...|.+.+++.+++.+..+.
T Consensus 149 ~~~~~~~~~~~g~~~g~~~~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 149 AFDMFYFTINFGSFFASLSMPLLLKNFG--AAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTHHHHTSC--HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHHHHHHH
Confidence 5 888999999999999999998765 566777777666666554443
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.22 E-value=1e-11 Score=123.01 Aligned_cols=179 Identities=16% Similarity=0.063 Sum_probs=117.5
Q ss_pred HHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccc
Q 010630 46 GWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIG 125 (505)
Q Consensus 46 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (505)
+......+.+.+.+..+.+............+...++.++.+++.| |+|||+.++..... ..++.+........
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d----r~Grr~~~~~~~~~-~~~~~~~l~~~~~~- 365 (491)
T 4gc0_A 292 GINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVD----KFGRKPLQIIGALG-MAIGMFSLGTAFYT- 365 (491)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCSHHHHHHHHHH-HHHHHHHHHHHHHT-
T ss_pred hhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHH----hhcCcchhccchHH-HHHHHHHHHHHHhc-
Confidence 4455566777778888988888887777888888899999999999 99999888764433 33333333221111
Q ss_pred cccCCCCCCcchhHHHHHHHHHHHHhhhhc-ccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccc
Q 010630 126 WLLGDRGDFRPRAIAVFVFGFWILDVANNM-TQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK 204 (505)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~ 204 (505)
. ... +..++...+...+.+. ..+..+.+.+|.+|.+.|+ .+.++......++..+++.+.+.+....
T Consensus 366 -------~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~--~~~g~~~~~~~~~~~i~~~~~p~l~~~~ 433 (491)
T 4gc0_A 366 -------Q-APG--IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRG--KALAIAVAAQWLANYFVSWTFPMMDKNS 433 (491)
T ss_dssp -------T-CCH--HHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHH--HHHHHHHHHHHHHHHHHHTHHHHHCHHH
T ss_pred -------c-cch--HHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011 1122222222222222 2345678999999999999 8999999999999888877654421100
Q ss_pred cccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 010630 205 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSH 251 (505)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~ 251 (505)
......++...|++.++++++..++.++++||++.+..
T Consensus 434 ---------~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tL 471 (491)
T 4gc0_A 434 ---------WLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTL 471 (491)
T ss_dssp ---------HHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCH
T ss_pred ---------HHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCH
Confidence 00000145567888888888888888899999987654
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.18 E-value=5.6e-11 Score=114.91 Aligned_cols=165 Identities=8% Similarity=0.004 Sum_probs=112.9
Q ss_pred HHHHHHhhhhHHHH-hC---CCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhccc
Q 010630 47 WALQLSLLTPYVQE-LG---IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA 122 (505)
Q Consensus 47 ~~~~~~~~~~~~~~-~g---~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~ 122 (505)
+......+|.|.++ ++ .+....++..++..+...++.++.|+++| |+|||+.++. +.....+..+...+.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~~~~l~~-~~~~~~~~~~~~~~~~ 310 (417)
T 2cfq_A 236 YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIIN----RIGGKNALLL-AGTIMSVRIIGSSFAT 310 (417)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCHHHHHHH-HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHH----HhcHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 33333446666543 33 22445677788888888889999999999 9999987766 4444455555554443
Q ss_pred ccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHH-HHHHHHHHHHHHhhcccccc
Q 010630 123 DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAY-FSLFMAVGNILGYATGSFSG 201 (505)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~g~~ig~~l~~~~~ 201 (505)
+. +.+++...+.+++.+...+...++++|.+|++.|+ .+.+. .+....+|..++|.+++++.
T Consensus 311 ~~---------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~lg~~~gp~l~G~l~ 373 (417)
T 2cfq_A 311 SA---------------LEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSA--TIYLVCFCFFKQLAMIFMSVLAGNMY 373 (417)
T ss_dssp SH---------------HHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHH--HHHHHHHTTTHHHHHHHHTHHHHTHH
T ss_pred cH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHhHHHHHhhhhHHHHH
Confidence 32 44444455555665555666788999999999999 77787 47788899999999888733
Q ss_pred ccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCC
Q 010630 202 WFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPL 248 (505)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~ 248 (505)
... +++..|.+.+++.++..++.++..||+++
T Consensus 374 ~~~---------------g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 374 ESI---------------GFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHS---------------HHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred Hhc---------------CcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 221 67778888887777776666666666544
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=54.67 E-value=9.2 Score=18.37 Aligned_cols=14 Identities=43% Similarity=0.643 Sum_probs=11.2
Q ss_pred HHHHHHHHhcchHH
Q 010630 351 LMEKLCRKWGAGFI 364 (505)
Q Consensus 351 ~~g~l~~r~g~~~~ 364 (505)
+.|.+.+|+||+.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 35889999999864
No 16
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=26.26 E-value=1.4e+02 Score=19.77 Aligned_cols=32 Identities=3% Similarity=-0.041 Sum_probs=15.7
Q ss_pred chhHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 010630 220 NLKSAFFLDVIFIAITTCISASAAHEVPLGSH 251 (505)
Q Consensus 220 ~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~ 251 (505)
+|..++.+...+.++..-+.-..+||+.++..
T Consensus 31 g~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~aP 62 (77)
T 2dw3_A 31 GWAGGVFFGTLLLIGFFRVVGRMLPIQENQAP 62 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTCSSCS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchhcccCC
Confidence 34444444444444444444456777655433
Done!