BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010631
(505 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071
Length = 732
Score = 439 bits (1129), Expect = e-123, Method: Compositional matrix adjust.
Identities = 223/502 (44%), Positives = 315/502 (62%), Gaps = 17/502 (3%)
Query: 1 MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYP 60
+WCHCR VYLPMSY Y R P V +LR+EL+ + IDW RN A ++LY P
Sbjct: 229 LWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTP 288
Query: 61 HPLIQDVLWATLDKVVEPLLMHWPGKKLREKALRNAIKHIHYEDENTRYLCIGPVNKVLN 120
H + V++A L+ L H LR++A++ +HI +D T+ + IGP++K +N
Sbjct: 289 HSWLLRVVYALLN-----LYEHHHSAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTIN 343
Query: 121 MLCCW-VEDPNSEAFKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIIST--NL 177
ML W V+ P S AF+ H+ RI DYLW+ DGMK+QG NGSQ+WDTAFA+QA++ +
Sbjct: 344 MLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKMQGTNGSQIWDTAFAIQALLEAGGHH 403
Query: 178 VEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGXX 237
E+ + L+KAH++++ SQV D P + +YR + KG + FST D GW +SDCT+E
Sbjct: 404 RPEFSSCLQKAHEFLRLSQV-PDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALK 462
Query: 238 XXXXXXXXXXXIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETF 297
+ E I +RL D+V V+ +++N DGGFATYE R LE+LNP+E F
Sbjct: 463 AVLLLQEKCPHVT-EHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVF 521
Query: 298 GDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSW 357
GDI+IDY VECTSA +QAL F K +P H ++ + + ++F + Q DGSW GSW
Sbjct: 522 GDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSW 581
Query: 358 GVCFTYGTWFGVKGLVAAGMNYSNSSS---IRKACEFLLSKQRPSGGWGESYLSCQKKVY 414
GVCFTYGTWFG++ G Y + ++ + +AC+FLLS+Q GGWGE + SC+++ Y
Sbjct: 582 GVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRY 641
Query: 415 SNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFN 474
L+ +S + NT WAM+ L+ + + R R L+ Q+ NGD+PQE I GVFN
Sbjct: 642 --LQSAQSQIHNTCWAMMGLMAVRHPDIEAQ--ERGVRCLLEKQLPNGDWPQENIAGVFN 697
Query: 475 RNCMISYSAYRNIFPIWALGEY 496
++C ISY++YRNIFPIWALG +
Sbjct: 698 KSCAISYTSYRNIFPIWALGRF 719
>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol
Length = 732
Score = 438 bits (1126), Expect = e-123, Method: Compositional matrix adjust.
Identities = 222/502 (44%), Positives = 315/502 (62%), Gaps = 17/502 (3%)
Query: 1 MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYP 60
+WCHCR VYLPMSY Y R P V +LR+EL+ + IDW RN A ++LY P
Sbjct: 229 LWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTP 288
Query: 61 HPLIQDVLWATLDKVVEPLLMHWPGKKLREKALRNAIKHIHYEDENTRYLCIGPVNKVLN 120
H + V++A L+ L H LR++A++ +HI +D T+ + IGP++K +N
Sbjct: 289 HSWLLRVVYALLN-----LYEHHHSAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTIN 343
Query: 121 MLCCW-VEDPNSEAFKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIIST--NL 177
ML W V+ P S AF+ H+ RI DYLW+ DGMK+QG NGSQ+WDTAFA+QA++ +
Sbjct: 344 MLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKMQGTNGSQIWDTAFAIQALLEAGGHH 403
Query: 178 VEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGXX 237
E+ + L+KAH++++ SQV D P + +YR + KG + FST D GW +SDCT+E
Sbjct: 404 RPEFSSCLQKAHEFLRLSQV-PDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALK 462
Query: 238 XXXXXXXXXXXIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETF 297
+ E I +RL D+V V+ +++N DGGFATYE R LE+LNP+E F
Sbjct: 463 AVLLLQEKCPHVT-EHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVF 521
Query: 298 GDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSW 357
GDI+IDY VECTSA +QAL F K +P H ++ + + ++F + Q DGSW GSW
Sbjct: 522 GDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSW 581
Query: 358 GVCFTYGTWFGVKGLVAAGMNYSNSSS---IRKACEFLLSKQRPSGGWGESYLSCQKKVY 414
GVCFTYGTWFG++ G Y + ++ + +AC+FLLS+Q GGWGE + SC+++ Y
Sbjct: 582 GVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRY 641
Query: 415 SNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFN 474
++ +S + NT WAM+ L+ + + R R L+ Q+ NGD+PQE I GVFN
Sbjct: 642 --VQSAQSQIHNTCWAMMGLMAVRHPDIEAQ--ERGVRCLLEKQLPNGDWPQENIAGVFN 697
Query: 475 RNCMISYSAYRNIFPIWALGEY 496
++C ISY++YRNIFPIWALG +
Sbjct: 698 KSCAISYTSYRNIFPIWALGRF 719
>pdb|1GSZ|A Chain A, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|B Chain B, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|C Chain C, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1H35|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3B|A Chain A, Squalene-Hopene Cyclase
pdb|1H3B|B Chain B, Squalene-Hopene Cyclase
pdb|1H3B|C Chain C, Squalene-Hopene Cyclase
pdb|1H3C|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6H|A Chain A, Squalene-Hopene Cyclase
pdb|1O6H|B Chain B, Squalene-Hopene Cyclase
pdb|1O6H|C Chain C, Squalene-Hopene Cyclase
pdb|1O6Q|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1UMP|A Chain A, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|B Chain B, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|C Chain C, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1SQC|A Chain A, Squalene-Hopene-Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 167/342 (48%), Gaps = 29/342 (8%)
Query: 160 SQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPF 219
S +WDT AV A+ + L ++ L KA +++ D Q+ PG+ ++ G + F
Sbjct: 309 SPVWDTGLAVLALRAAGLPADHD-RLVKAGEWLLDRQIT--VPGDWAVKRPNLKPGGFAF 365
Query: 220 STADHGWPISDCTSEGXXXXXXXXXXXXXIVGEPIETKR---LYDSVNVIFSLQNADGGF 276
+ +P D T+ + P E +R + I +Q+++GG+
Sbjct: 366 QFDNVYYPDVDDTA--------VVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGW 417
Query: 277 ATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCI 336
Y++ + L P FG+ V D P + T+ ++ SF Y W+ I
Sbjct: 418 GAYDVDNTSD-LPNHIPFCDFGE-VTDPPSEDVTAHVLECFGSFG--YDDAWK-----VI 468
Query: 337 KRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQ 396
+RAV+++++ Q+ DGSW+G WGV + YGT V L A G++ + I+KA +++ Q
Sbjct: 469 RRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGID-TREPYIQKALDWVEQHQ 527
Query: 397 RPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLIN 456
P GGWGE S + Y+ S TAWA++ALI G+AE++ R +YL+
Sbjct: 528 NPDGGWGEDCRSYEDPAYAGKGA--STPSQTAWALMALIAGGRAESEAA--RRGVQYLVE 583
Query: 457 SQMENGDYPQEEIMGV-FNRNCMISYSAYRNIFPIWALGEYR 497
+Q +G + + G F + + Y+ YR++FP ALG Y+
Sbjct: 584 TQRPDGGWDEPYYTGTGFPGDFYLGYTMYRHVFPTLALGRYK 625
>pdb|2SQC|A Chain A, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
pdb|2SQC|B Chain B, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 125 bits (313), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 166/342 (48%), Gaps = 29/342 (8%)
Query: 160 SQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPF 219
S +WDT AV A+ + L ++ L KA +++ D Q+ PG+ ++ G + F
Sbjct: 309 SPVWDTGLAVLALRAAGLPADHD-RLVKAGEWLLDRQIT--VPGDWAVKRPNLKPGGFAF 365
Query: 220 STADHGWPISDCTSEGXXXXXXXXXXXXXIVGEPIETKR---LYDSVNVIFSLQNADGGF 276
+ +P T+ + P E +R + I +Q+++GG+
Sbjct: 366 QFDNVYYPDVCDTA--------VVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGW 417
Query: 277 ATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCI 336
Y++ + L P FG+ V D P + T+ ++ SF Y W+ I
Sbjct: 418 GAYDVDNTSD-LPNHIPFSDFGE-VTDPPSEDVTAHVLECFGSFG--YDDAWK-----VI 468
Query: 337 KRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQ 396
+RAV+++++ Q+ DGSW+G WGV + YGT V L A G++ + I+KA +++ Q
Sbjct: 469 RRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGID-TREPYIQKALDWVEQHQ 527
Query: 397 RPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLIN 456
P GGWGE S + Y+ S TAWA++ALI G+AE++ R +YL+
Sbjct: 528 NPDGGWGEDCRSYEDPAYAGKGA--STPSQTAWALMALIAGGRAESEAA--RRGVQYLVE 583
Query: 457 SQMENGDYPQEEIMGV-FNRNCMISYSAYRNIFPIWALGEYR 497
+Q +G + + G F + + Y+ YR++FP ALG Y+
Sbjct: 584 TQRPDGGWDEPYYTGTGFPGDFYLGYTMYRHVFPTLALGRYK 625
>pdb|3SQC|A Chain A, Squalene-Hopene Cyclase
pdb|3SQC|B Chain B, Squalene-Hopene Cyclase
pdb|3SQC|C Chain C, Squalene-Hopene Cyclase
Length = 631
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 166/342 (48%), Gaps = 29/342 (8%)
Query: 160 SQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPF 219
S +WDT AV A+ + L ++ L KA +++ D Q+ PG+ ++ G + F
Sbjct: 309 SPVWDTGLAVLALRAAGLPADHD-RLVKAGEWLLDRQIT--VPGDWAVKRPNLKPGGFAF 365
Query: 220 STADHGWPISDCTSEGXXXXXXXXXXXXXIVGEPIETKR---LYDSVNVIFSLQNADGGF 276
+ +P T+ + P E +R + I +Q+++GG+
Sbjct: 366 QFDNVYYPDVCDTA--------VVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGW 417
Query: 277 ATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCI 336
Y++ + L P FG+ V D P + T+ ++ SF Y W+ I
Sbjct: 418 GAYDVDNTSD-LPNHIPFCDFGE-VTDPPSEDVTAHVLECFGSFG--YDDAWK-----VI 468
Query: 337 KRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQ 396
+RAV+++++ Q+ DGSW+G WGV + YGT V L A G++ + I+KA +++ Q
Sbjct: 469 RRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGID-TREPYIQKALDWVEQHQ 527
Query: 397 RPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLIN 456
P GGWGE S + Y+ S TAWA++ALI G+AE++ R +YL+
Sbjct: 528 NPDGGWGEDCRSYEDPAYAGKGA--STPSQTAWALMALIAGGRAESEAA--RRGVQYLVE 583
Query: 457 SQMENGDYPQEEIMGV-FNRNCMISYSAYRNIFPIWALGEYR 497
+Q +G + + G F + + Y+ YR++FP ALG Y+
Sbjct: 584 TQRPDGGWDEPYYTGTGFPGDFYLGYTMYRHVFPTLALGRYK 625
>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|D Chain D, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1LTX|B Chain B, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
pdb|3C72|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor
pdb|3DSS|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)
pdb|3DST|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Geranylgeranyl Pyrophosphate
pdb|3DSU|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Farnesyl Pyrophosphate
pdb|3DSV|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys-Ser-Cys(Gg)
Derivated From Rab7
pdb|3DSW|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys
Derivated From Rab7
pdb|3DSX|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Di-Prenylated Peptide
Ser-Cys(Gg)-Ser-Cys(Gg) Derivated From Rab7
pdb|3HXB|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 6)
pdb|3HXC|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 8)
pdb|3HXD|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 9)
pdb|3HXE|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 37)
pdb|3HXF|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 32)
Length = 331
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 310 TSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGS-WGVCFTYGTWFG 368
T +++Q LT + ++ + + + V +++ +Q+ DGS+ G WG T ++
Sbjct: 98 TLSAVQILTLYDSIHVIN--------VDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCA 149
Query: 369 VKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWG 403
V L G ++ ++ KA EF+LS GG+G
Sbjct: 150 VATLALLGK--LDAINVEKAIEFVLSCMNFDGGFG 182
>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3
pdb|3PZ2|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3 And Lipid Substrate Ggpp
pdb|3PZ3|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms-Analogue 14
pdb|4EHM|B Chain B, Rabggtase In Complex With Covalently Bound Psoromic Acid
pdb|4GTS|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 16
pdb|4GTT|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 12
pdb|4GTV|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 13
Length = 330
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 310 TSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGS-WGVCFTYGTWFG 368
T +++Q LT + ++ + + + V +++ +Q+ DGS+ G WG T ++
Sbjct: 97 TLSAVQILTLYDSIHVIN--------VDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCA 148
Query: 369 VKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWG 403
V L G ++ ++ KA EF+LS GG+G
Sbjct: 149 VATLALLGK--LDAINVEKAIEFVLSCMNFDGGFG 181
>pdb|1XFD|A Chain A, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|B Chain B, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|C Chain C, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|D Chain D, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
Length = 723
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 9/106 (8%)
Query: 126 VEDPNSEAFKLHIPRINDYLWIAEDGMKVQGYNGS-QLWDTAFAVQAIISTNLVEEYGAT 184
VED SE FK+H P WI++ + G+ +LW+ V+ ST L+E
Sbjct: 7 VEDLFSEDFKIHDPEAK---WISDTEFIYREQKGTVRLWN----VETNTSTVLIEGKKIE 59
Query: 185 LKKAHKY-IKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPIS 229
+A +Y I + N++ Y+H G + S HG P S
Sbjct: 60 SLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS 105
>pdb|3NRU|A Chain A, Ligand Binding Domain Of Epha7
pdb|3NRU|B Chain B, Ligand Binding Domain Of Epha7
pdb|3NRU|C Chain C, Ligand Binding Domain Of Epha7
pdb|3NRU|D Chain D, Ligand Binding Domain Of Epha7
pdb|3NRU|E Chain E, Ligand Binding Domain Of Epha7
pdb|3NRU|F Chain F, Ligand Binding Domain Of Epha7
pdb|3NRU|G Chain G, Ligand Binding Domain Of Epha7
pdb|3NRU|H Chain H, Ligand Binding Domain Of Epha7
pdb|3NRU|I Chain I, Ligand Binding Domain Of Epha7
pdb|3NRU|J Chain J, Ligand Binding Domain Of Epha7
pdb|3NRU|K Chain K, Ligand Binding Domain Of Epha7
pdb|3NRU|L Chain L, Ligand Binding Domain Of Epha7
Length = 187
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 26 PTVLALRKELFTVPYHEIDWNEARNLCAKEDLY 58
P VL KE F + Y+E D++ RN+ +E+LY
Sbjct: 84 PGVLGTCKETFNLYYYETDYDTGRNI--RENLY 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,932,783
Number of Sequences: 62578
Number of extensions: 668229
Number of successful extensions: 1487
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1435
Number of HSP's gapped (non-prelim): 21
length of query: 505
length of database: 14,973,337
effective HSP length: 103
effective length of query: 402
effective length of database: 8,527,803
effective search space: 3428176806
effective search space used: 3428176806
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)