Query 010631
Match_columns 505
No_of_seqs 386 out of 2055
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 02:46:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010631.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010631hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03012 Camelliol C synthase 100.0 3E-129 7E-134 1056.1 45.1 501 1-502 257-758 (759)
2 PLN02993 lupeol synthase 100.0 2E-127 4E-132 1044.4 45.4 502 1-503 257-759 (763)
3 KOG0497 Oxidosqualene-lanoster 100.0 5E-115 1E-119 906.0 30.0 501 1-502 257-757 (760)
4 TIGR03463 osq_cycl 2,3-oxidosq 100.0 2E-105 4E-110 875.4 42.7 483 1-496 150-634 (634)
5 cd02892 SQCY_1 Squalene cyclas 100.0 8.2E-94 1.8E-98 789.3 41.8 481 1-496 153-634 (634)
6 TIGR01507 hopene_cyclase squal 100.0 7.7E-93 1.7E-97 774.9 42.1 455 1-499 169-632 (635)
7 TIGR01787 squalene_cyclas squa 100.0 9.6E-93 2.1E-97 774.1 41.3 464 1-498 153-621 (621)
8 COG1657 SqhC Squalene cyclase 100.0 1.9E-54 4.1E-59 449.9 14.4 444 1-499 68-513 (517)
9 cd02889 SQCY Squalene cyclase 100.0 4.4E-49 9.6E-54 406.0 31.3 347 135-496 2-348 (348)
10 TIGR01507 hopene_cyclase squal 100.0 2E-34 4.3E-39 315.6 25.8 305 85-437 285-629 (635)
11 PLN03012 Camelliol C synthase 100.0 3.2E-34 7E-39 313.1 24.5 317 84-438 386-753 (759)
12 PLN02993 lupeol synthase 100.0 3.4E-32 7.3E-37 297.9 25.4 316 84-438 386-753 (763)
13 TIGR03463 osq_cycl 2,3-oxidosq 100.0 9.7E-32 2.1E-36 294.7 23.9 311 85-436 274-633 (634)
14 cd00688 ISOPREN_C2_like This g 100.0 1E-28 2.2E-33 245.5 28.0 295 135-496 2-300 (300)
15 TIGR01787 squalene_cyclas squa 100.0 8.3E-29 1.8E-33 271.3 24.6 306 86-437 266-619 (621)
16 cd02896 complement_C3_C4_C5 Pr 100.0 9.2E-27 2E-31 234.9 24.1 269 160-496 21-297 (297)
17 cd02892 SQCY_1 Squalene cyclas 100.0 8.1E-27 1.8E-31 257.7 24.5 312 84-436 275-633 (634)
18 cd02897 A2M_2 Proteins similar 99.9 2.8E-26 6E-31 231.1 25.0 268 159-496 20-292 (292)
19 cd02889 SQCY Squalene cyclase 99.9 5.5E-25 1.2E-29 226.7 22.2 248 185-496 1-291 (348)
20 cd00688 ISOPREN_C2_like This g 99.9 1.5E-21 3.2E-26 193.9 22.9 244 129-436 49-299 (300)
21 cd02890 PTase Protein prenyltr 99.9 9.2E-20 2E-24 183.1 24.2 280 135-495 2-285 (286)
22 cd02890 PTase Protein prenyltr 99.8 5.1E-19 1.1E-23 177.7 18.6 190 227-467 25-217 (286)
23 cd02894 GGTase-II Geranylgeran 99.8 5.3E-18 1.1E-22 170.4 24.3 282 134-495 3-286 (287)
24 PF07678 A2M_comp: A-macroglob 99.8 2.8E-18 6E-23 168.6 19.0 227 215-497 14-245 (246)
25 PLN03201 RAB geranylgeranyl tr 99.8 2.9E-18 6.2E-23 174.1 19.0 223 183-478 8-231 (316)
26 PLN03201 RAB geranylgeranyl tr 99.7 5E-16 1.1E-20 157.7 25.5 280 134-497 10-292 (316)
27 cd02893 FTase Protein farnesyl 99.7 5.4E-16 1.2E-20 156.4 25.4 282 135-494 2-297 (299)
28 cd02895 GGTase-I Geranylgerany 99.7 3.8E-16 8.2E-21 158.0 24.1 292 135-495 2-306 (307)
29 cd02896 complement_C3_C4_C5 Pr 99.7 1.6E-16 3.4E-21 160.5 20.7 226 134-436 54-296 (297)
30 cd02894 GGTase-II Geranylgeran 99.7 2.2E-16 4.8E-21 158.7 20.9 234 133-436 50-286 (287)
31 cd02897 A2M_2 Proteins similar 99.7 1.4E-15 3.1E-20 153.2 22.0 224 134-436 51-291 (292)
32 PF13249 Prenyltrans_2: Prenyl 99.7 2.5E-17 5.5E-22 141.7 7.7 110 340-465 1-112 (113)
33 PF13249 Prenyltrans_2: Prenyl 99.7 1.9E-17 4.2E-22 142.5 6.1 108 263-403 1-112 (113)
34 cd02891 A2M_like Proteins simi 99.7 1.4E-14 3E-19 144.9 24.1 237 180-496 46-282 (282)
35 KOG0497 Oxidosqualene-lanoster 99.7 6.8E-16 1.5E-20 163.3 14.5 214 159-405 480-722 (760)
36 PF13243 Prenyltrans_1: Prenyl 99.7 3.8E-17 8.2E-22 140.0 3.4 108 336-460 1-108 (109)
37 cd02893 FTase Protein farnesyl 99.6 1.8E-14 4E-19 145.3 22.4 246 118-436 33-298 (299)
38 cd02895 GGTase-I Geranylgerany 99.6 1.2E-13 2.5E-18 140.0 22.2 256 118-436 33-306 (307)
39 PLN02710 farnesyltranstransfer 99.6 3.8E-13 8.1E-18 140.3 24.4 288 134-499 46-392 (439)
40 PLN02710 farnesyltranstransfer 99.5 7E-13 1.5E-17 138.3 20.8 212 229-499 72-284 (439)
41 TIGR02474 pec_lyase pectate ly 99.5 5.3E-13 1.2E-17 131.4 13.9 158 228-402 42-225 (290)
42 PF13243 Prenyltrans_1: Prenyl 99.4 6.2E-14 1.3E-18 120.0 3.0 107 259-397 1-107 (109)
43 KOG0366 Protein geranylgeranyl 99.4 4.4E-12 9.5E-17 120.3 13.1 174 259-479 68-242 (329)
44 COG1657 SqhC Squalene cyclase 99.3 5.7E-12 1.2E-16 132.6 9.4 211 153-406 255-482 (517)
45 PF07678 A2M_comp: A-macroglob 99.3 1.2E-10 2.7E-15 114.4 16.8 222 137-437 2-244 (246)
46 COG5029 CAL1 Prenyltransferase 99.3 2E-10 4.4E-15 112.2 17.4 211 159-440 101-317 (342)
47 KOG0366 Protein geranylgeranyl 99.3 2.5E-10 5.5E-15 108.5 17.5 239 185-494 68-316 (329)
48 cd02891 A2M_like Proteins simi 99.3 6.2E-10 1.3E-14 111.3 21.6 222 132-436 49-281 (282)
49 COG5029 CAL1 Prenyltransferase 99.2 8.3E-11 1.8E-15 114.8 11.9 179 257-478 75-254 (342)
50 KOG0367 Protein geranylgeranyl 99.0 2.2E-08 4.8E-13 97.1 18.7 303 132-499 11-322 (347)
51 TIGR02474 pec_lyase pectate ly 98.9 2.3E-08 4.9E-13 98.9 14.3 152 308-464 44-225 (290)
52 KOG0365 Beta subunit of farnes 98.9 9.8E-08 2.1E-12 94.4 17.6 286 135-495 75-368 (423)
53 KOG0365 Beta subunit of farnes 98.7 9.1E-08 2E-12 94.6 11.7 174 252-467 115-290 (423)
54 KOG1366 Alpha-macroglobulin [P 98.7 1.1E-07 2.4E-12 111.9 14.4 263 165-502 948-1216(1436)
55 KOG0367 Protein geranylgeranyl 98.7 5.8E-07 1.3E-11 87.4 16.9 143 258-440 175-322 (347)
56 COG1689 Uncharacterized protei 98.5 2.4E-06 5.2E-11 79.7 13.1 227 184-472 7-255 (274)
57 COG1689 Uncharacterized protei 98.4 1.8E-05 3.9E-10 74.0 16.3 252 93-436 8-270 (274)
58 PF09492 Pec_lyase: Pectic aci 98.4 1.1E-06 2.4E-11 87.1 8.7 150 308-466 39-222 (289)
59 PF09492 Pec_lyase: Pectic aci 98.2 3.7E-06 8E-11 83.4 7.8 158 228-402 37-220 (289)
60 TIGR01577 oligosac_amyl oligos 98.2 0.00042 9E-09 77.2 23.8 266 160-467 293-585 (616)
61 PF00432 Prenyltrans: Prenyltr 98.1 5.7E-06 1.2E-10 58.8 5.6 43 384-438 2-44 (44)
62 PF00432 Prenyltrans: Prenyltr 97.9 2.6E-05 5.7E-10 55.3 4.8 41 336-376 3-44 (44)
63 PF07470 Glyco_hydro_88: Glyco 97.6 0.0023 5.1E-08 65.8 16.6 219 253-499 86-335 (336)
64 PF01122 Cobalamin_bind: Eukar 97.6 0.00073 1.6E-08 68.3 11.7 104 307-436 186-292 (326)
65 PLN02592 ent-copalyl diphospha 97.5 0.0037 8.1E-08 70.6 17.1 91 337-441 285-377 (800)
66 PLN02279 ent-kaur-16-ene synth 97.1 0.012 2.6E-07 66.7 15.5 86 337-440 245-331 (784)
67 PF07470 Glyco_hydro_88: Glyco 97.0 0.011 2.3E-07 60.9 13.2 229 178-437 85-332 (336)
68 PLN02592 ent-copalyl diphospha 97.0 0.0027 5.9E-08 71.7 9.1 84 359-458 94-177 (800)
69 PF01122 Cobalamin_bind: Eukar 96.9 0.013 2.8E-07 59.4 12.8 147 159-373 142-291 (326)
70 cd00249 AGE AGE domain; N-acyl 96.7 0.24 5.2E-06 51.6 20.5 101 159-276 49-158 (384)
71 KOG1366 Alpha-macroglobulin [P 96.5 0.021 4.6E-07 68.4 12.2 54 307-376 1158-1211(1436)
72 PLN02279 ent-kaur-16-ene synth 96.4 0.0046 9.9E-08 70.0 5.8 85 359-457 52-136 (784)
73 TIGR01535 glucan_glucosid gluc 96.2 1 2.3E-05 50.3 22.5 289 163-500 298-629 (648)
74 cd00249 AGE AGE domain; N-acyl 96.0 0.94 2E-05 47.1 20.4 247 183-466 14-285 (384)
75 TIGR01577 oligosac_amyl oligos 95.4 1.8 3.9E-05 48.5 20.7 232 132-406 314-586 (616)
76 TIGR01535 glucan_glucosid gluc 95.2 0.4 8.6E-06 53.6 14.7 115 230-375 298-415 (648)
77 COG3387 SGA1 Glucoamylase and 94.2 2.4 5.2E-05 47.3 17.6 270 163-467 288-576 (612)
78 PF07944 DUF1680: Putative gly 93.3 14 0.0003 40.5 21.5 144 182-343 10-157 (520)
79 PF10022 DUF2264: Uncharacteri 93.2 11 0.00023 39.3 19.3 177 160-390 106-294 (361)
80 COG1331 Highly conserved prote 89.5 11 0.00023 42.1 15.2 131 182-356 182-319 (667)
81 COG4225 Predicted unsaturated 88.4 18 0.00039 37.0 14.8 214 115-353 79-310 (357)
82 PF00759 Glyco_hydro_9: Glycos 72.7 18 0.0004 38.5 9.2 92 256-347 97-196 (444)
83 COG2373 Large extracellular al 71.3 16 0.00035 45.3 9.1 97 226-346 1167-1264(1621)
84 COG1331 Highly conserved prote 68.5 78 0.0017 35.5 12.8 133 165-325 413-552 (667)
85 PLN00119 endoglucanase 66.2 1.8E+02 0.0038 31.7 14.8 181 162-347 9-219 (489)
86 COG2373 Large extracellular al 64.7 74 0.0016 39.7 12.8 72 180-272 1196-1268(1621)
87 COG4225 Predicted unsaturated 64.0 1.8E+02 0.0039 30.0 16.7 162 267-437 169-349 (357)
88 cd04791 LanC_SerThrkinase Lant 59.6 1.9E+02 0.0042 28.8 18.9 188 166-400 89-281 (321)
89 PLN02613 endoglucanase 58.3 2.8E+02 0.0061 30.3 17.1 165 179-347 25-214 (498)
90 PF07944 DUF1680: Putative gly 57.3 29 0.00064 38.0 7.2 80 309-392 61-157 (520)
91 PF00723 Glyco_hydro_15: Glyco 56.6 2E+02 0.0043 30.7 13.3 41 227-269 123-165 (448)
92 PF07221 GlcNAc_2-epim: N-acyl 52.5 47 0.001 34.0 7.5 95 306-404 19-126 (346)
93 cd04794 euk_LANCL eukaryotic L 49.3 2.4E+02 0.0052 28.8 12.1 42 426-467 169-210 (343)
94 PLN02340 endoglucanase 43.0 5.3E+02 0.011 29.0 14.5 166 179-347 29-218 (614)
95 COG3387 SGA1 Glucoamylase and 40.6 1.5E+02 0.0033 33.2 9.5 130 231-375 289-429 (612)
96 PLN02345 endoglucanase 39.4 4.5E+02 0.0097 28.5 12.5 90 256-347 85-184 (469)
97 COG2942 N-acyl-D-glucosamine 2 38.1 1.5E+02 0.0031 31.2 8.2 78 180-277 75-162 (388)
98 cd04794 euk_LANCL eukaryotic L 37.8 1.1E+02 0.0023 31.4 7.4 81 309-392 166-256 (343)
99 PF07221 GlcNAc_2-epim: N-acyl 36.9 68 0.0015 32.8 5.8 85 375-466 36-126 (346)
100 PLN02909 Endoglucanase 34.6 6.4E+02 0.014 27.5 23.3 164 180-347 34-222 (486)
101 KOG3760 Heparan sulfate-glucur 33.1 28 0.00061 36.2 2.1 23 383-405 380-402 (594)
102 cd04791 LanC_SerThrkinase Lant 32.3 5.1E+02 0.011 25.7 15.5 102 255-376 103-210 (321)
103 PF11329 DUF3131: Protein of u 29.8 4.6E+02 0.0099 27.4 10.3 91 228-327 32-125 (367)
104 PF06662 C5-epim_C: D-glucuron 29.2 1.3E+02 0.0028 28.4 5.7 100 396-499 1-110 (189)
105 PLN03009 cellulase 27.1 2.9E+02 0.0062 30.2 8.6 26 329-354 112-137 (495)
106 PLN02308 endoglucanase 24.6 8.2E+02 0.018 26.7 11.5 88 257-347 116-214 (492)
107 PLN03009 cellulase 20.2 1.1E+03 0.025 25.6 15.3 89 256-347 116-215 (495)
No 1
>PLN03012 Camelliol C synthase
Probab=100.00 E-value=3.1e-129 Score=1056.15 Aligned_cols=501 Identities=59% Similarity=1.106 Sum_probs=479.4
Q ss_pred CceeecchHHHHHHHhhCCCcCcCCcchhhhhhhcccCCCCCCCchhhhcccccccCCCCCchHHHHHHHHHHHHhhhhc
Q 010631 1 MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYPHPLIQDVLWATLDKVVEPLL 80 (505)
Q Consensus 1 ~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~l~~el~~~~~~~~~~~~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 80 (505)
||||||+|||||+|||++||++|++|++.+||+|||++||++|||.++|++||++|+|+||+++++++|..++.++|+++
T Consensus 257 ~~~~~R~vy~Pmsyly~~R~~~~~~~~i~~lr~ELy~~py~~i~w~~~r~~~a~~D~y~p~~~~~~~~~~~l~~~~~~~l 336 (759)
T PLN03012 257 MWCYCRLVYLPMSYLYGKRFVGPISPLILQLREEIYLQPYAEINWMKARHLCAKEDAYCPHPLIQDLIWDCLYIFAEPFL 336 (759)
T ss_pred HHHHHHHHHHHHHHHhcCCccccCCchhhhhHHHhCCCCccccChhhhccccccccccCCchHHHhhhHHHHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCh-HHHHHHHHHHHHHHhhccCCcceeeechhhhhhhhheecccCCCCHHHHHHHhhhhhceeeeCCCceeecCCC
Q 010631 81 MHWPGK-KLREKALRNAIKHIHYEDENTRYLCIGPVNKVLNMLCCWVEDPNSEAFKLHIPRINDYLWIAEDGMKVQGYNG 159 (505)
Q Consensus 81 ~~~~~~-~~r~~a~~~~~~~~~~~~~~~~~~~~~pv~~~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~q~~~~ 159 (505)
..+|+. +||++|+++++++|+.||++|.|+|++||+++|+||++++++|+||.|++|+++|.+|+|+.++||++|+| +
T Consensus 337 ~~~~~~~~LR~~Al~~a~~~I~~ed~~t~y~~i~pv~~~l~ml~~~~~~p~~~~~k~hl~ri~d~lw~~~dGm~~q~~-g 415 (759)
T PLN03012 337 ACWPFNKLLREKALGLAMKHIHYEDENSRYITIGCVEKALCMLACWVEDPNGDHFKKHLLRISDYLWIAEDGMKMQSF-G 415 (759)
T ss_pred hcccccHHHHHHHHHHHHHHHHhcCCCCCEeeHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcEEEeCCceEEcCC-C
Confidence 888755 69999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CChhHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHHHh
Q 010631 160 SQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKAS 239 (505)
Q Consensus 160 s~vwDTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL 239 (505)
||||||||+++||+++|++++++++++||++||+++|++++++|||+.++|+.++|||+|++.|++|||+||||++|+|+
T Consensus 416 SqvWDTa~~~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sD~TAe~Lka~ 495 (759)
T PLN03012 416 SQLWDSGFALQALLASNLSNEIPDVLRRGHDFIKNSQVGENPSGDFKNMYRHISKGAWTFSDRDHGWQASDCTAEGFKCC 495 (759)
T ss_pred CcHHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHhccCCCCChhhhhCCCCCCCcccccCCCCCCCCCCccHHHHHHH
Confidence 99999999999999999988888999999999999999988999999999999999999999999999999999999998
Q ss_pred HHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHH
Q 010631 240 LLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTS 319 (505)
Q Consensus 240 ~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~ 319 (505)
+.++..++++.|..+..+++.+||+||++|||+||||++|+.++++.|+|.+||+|+|+++|+|++++|||++||++|..
T Consensus 496 lll~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~ 575 (759)
T PLN03012 496 LLFSMIAPDIVGPKMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALIL 575 (759)
T ss_pred HHHHhcccccccccccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHH
Confidence 77765554455667788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCC
Q 010631 320 FKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPS 399 (505)
Q Consensus 320 ~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~D 399 (505)
+++.+++++.+++++.|+||++||++.|++||||+|+||+||+|||++||.||.++|.++.++++|+|||+||+++|++|
T Consensus 576 f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~~DGsW~G~Wgv~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~D 655 (759)
T PLN03012 576 FKQLYPDHRTEEINAFIKKAAEYIENIQMLDGSWYGNWGICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDN 655 (759)
T ss_pred HhhhCcccchhhhHHHHHHHHHHHHHhcCCCCCCcccccccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCC
Confidence 99888888888889999999999999999999999999999999999999999999998767799999999999999999
Q ss_pred CCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCcccceecccccc
Q 010631 400 GGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFNRNCMI 479 (505)
Q Consensus 400 GgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~w~~~~~~g~f~~~~~~ 479 (505)
|||||++.||.++.|++.+++.|+++||||||+||+++|+.+.++++|+||++||+++|++||+|++++++|+||++|||
T Consensus 656 GGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~~~~G~F~~~~~i 735 (759)
T PLN03012 656 GGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQQEATGAFLKNCLL 735 (759)
T ss_pred CCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCceeeeeeccceEE
Confidence 99999999999999998666789999999999999999988767778999999999999999999999999999999999
Q ss_pred ccCCchhhHHHHHHHHHHHHhhh
Q 010631 480 SYSAYRNIFPIWALGEYRCRVLE 502 (505)
Q Consensus 480 ~y~~y~~~fpl~AL~~y~~~~~~ 502 (505)
+||+||++|||||||+|++..+.
T Consensus 736 ~Y~~Yr~~FPl~ALg~Y~~~~~~ 758 (759)
T PLN03012 736 HYAAYRNIFPLWALAEYRARVPL 758 (759)
T ss_pred ecCccchHHHHHHHHHHHHhccC
Confidence 99999999999999999998764
No 2
>PLN02993 lupeol synthase
Probab=100.00 E-value=2e-127 Score=1044.37 Aligned_cols=502 Identities=57% Similarity=1.088 Sum_probs=477.8
Q ss_pred CceeecchHHHHHHHhhCCCcCcCCcchhhhhhhcccCCCCCCCchhhhcccccccCCCCCchHHHHHHHHHHHHhhhhc
Q 010631 1 MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYPHPLIQDVLWATLDKVVEPLL 80 (505)
Q Consensus 1 ~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~l~~el~~~~~~~~~~~~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 80 (505)
||||+|+|||||+|||++||++|++|++.+||+|||++||++|+|.++|+.|+++|+|+|++++++++++.+.+++++++
T Consensus 257 ~~~~~R~v~vPmsyl~~~r~~~~~~~~i~~lr~ELy~~py~~i~~~~~r~~~~~~d~y~p~~~~~~~~~~~l~~~~~~~l 336 (763)
T PLN02993 257 TLCYTRMVYMPMSYLYGKRFVGPITPLIMLLREELHLQPYEEINWNKARRLCAKEDMYYPHPLVQDLIWDTLHNFVEPFL 336 (763)
T ss_pred hHHhhhhhHHhHHHHhcCCcccCCCchhhhhhHHhccCCchhcChHhhcCCccccCCCCCchHHHHHHHHHHHHHHhhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999988999999999999998
Q ss_pred cCCCCh-HHHHHHHHHHHHHHhhccCCcceeeechhhhhhhhheecccCCCCHHHHHHHhhhhhceeeeCCCceeecCCC
Q 010631 81 MHWPGK-KLREKALRNAIKHIHYEDENTRYLCIGPVNKVLNMLCCWVEDPNSEAFKLHIPRINDYLWIAEDGMKVQGYNG 159 (505)
Q Consensus 81 ~~~~~~-~~r~~a~~~~~~~~~~~~~~~~~~~~~pv~~~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~q~~~~ 159 (505)
.++|++ +||++|+++++++|++||++|+|+||+|||++||||++++++|+||.+++|+++|.+|+|+.++|+++|+| +
T Consensus 337 ~~~p~~~~lR~~Al~~a~~~i~~ed~~t~y~~i~~vn~~l~ml~~~~~~p~~~~~~~~l~ri~d~lw~~edgm~~q~~-g 415 (763)
T PLN02993 337 TRWPLNKLVREKALQVAMKHIHYEDENSHYITIGCVEKVLCMLACWIENPNGDHFKKHLARIPDYMWVAEDGMKMQSF-G 415 (763)
T ss_pred cCCcchHHHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcEEEeCCceEEcCC-C
Confidence 888877 79999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CChhHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHHHh
Q 010631 160 SQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKAS 239 (505)
Q Consensus 160 s~vwDTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL 239 (505)
||||||||+++||+++|++++++++|+||.+||+++|++++++|||.+++|+.++|||+|++.|++|||+||||++|+|+
T Consensus 416 SqvWDTa~a~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lka~ 495 (763)
T PLN02993 416 SQLWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALKCC 495 (763)
T ss_pred CchHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHHHHHHH
Confidence 99999999999999999986779999999999999999988999999999999999999999999999999999999998
Q ss_pred HHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHH
Q 010631 240 LLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTS 319 (505)
Q Consensus 240 ~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~ 319 (505)
+.++..++++.|.++..+++.+||+||++|||+||||++|+.++++.|+|.+||+|+|+++|+|++++|||++||++|+.
T Consensus 496 l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~ 575 (763)
T PLN02993 496 MLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVL 575 (763)
T ss_pred HHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHH
Confidence 77776654445566778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCC
Q 010631 320 FKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPS 399 (505)
Q Consensus 320 ~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~D 399 (505)
+++.+|+++.++|+++|+||++||++.|++||||+|+||+||+|+|++||.||.++|.++.+.+.|+|||+||+++|++|
T Consensus 576 ~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G~Wgv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~D 655 (763)
T PLN02993 576 FKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGNWGICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDD 655 (763)
T ss_pred hcccCcchhhhhHHHHHHHHHHHHHHhcCCCCCcccccccccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCC
Confidence 98877888888899999999999999999999999999999999999999999999998656689999999999999999
Q ss_pred CCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCcccceecccccc
Q 010631 400 GGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFNRNCMI 479 (505)
Q Consensus 400 GgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~w~~~~~~g~f~~~~~~ 479 (505)
|||||++.||.++.|.+.+++.|++++|||||+||+++|..+.++++|+||++||+++|+++|+|++++++|+||++|||
T Consensus 656 GGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~~~G~W~q~~~~G~F~~~~~i 735 (763)
T PLN02993 656 GGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQLENGDFPQQEILGAFMNTCML 735 (763)
T ss_pred CCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCCcceeceECcccee
Confidence 99999999999999997666789999999999999999987666678999999999999999999999999999999999
Q ss_pred ccCCchhhHHHHHHHHHHHHhhhh
Q 010631 480 SYSAYRNIFPIWALGEYRCRVLEA 503 (505)
Q Consensus 480 ~y~~y~~~fpl~AL~~y~~~~~~~ 503 (505)
+||+||++|||||||+|++..+-.
T Consensus 736 ~Y~~Yr~~FPl~ALg~Y~~~~~~~ 759 (763)
T PLN02993 736 HYATYRNTFPLWALAEYRKAAFIT 759 (763)
T ss_pred ccCccchHHHHHHHHHHHHhhhhh
Confidence 999999999999999999987643
No 3
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=4.6e-115 Score=906.04 Aligned_cols=501 Identities=66% Similarity=1.215 Sum_probs=488.8
Q ss_pred CceeecchHHHHHHHhhCCCcCcCCcchhhhhhhcccCCCCCCCchhhhcccccccCCCCCchHHHHHHHHHHHHhhhhc
Q 010631 1 MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYPHPLIQDVLWATLDKVVEPLL 80 (505)
Q Consensus 1 ~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~l~~el~~~~~~~~~~~~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 80 (505)
||||+|.||+||||||++||++|.+|++..||+|||++||++|+|.++|+.|+++|+|+|||.+++++|+.|..+.++++
T Consensus 257 ~w~~~R~vy~pmsYlygkrfv~~~tpli~~LreELy~~py~~Inw~~~Rn~~akeDlyyphs~i~D~l~~~l~~~~e~ll 336 (760)
T KOG0497|consen 257 LWCHCRDVYMPMSYLYGKRFVAPPTPLILQLREELYPEPYDKINWSKARNLCAKEDLYYPHSLLQDLLWALLHKFSEPLL 336 (760)
T ss_pred eEEEecceecccccceeeeeeccCChHHHHHhhhhcCCChhhhhHHHHhhccccccccCCcHHHHHHHHHHHHHHHHhhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHhhccCCcceeeechhhhhhhhheecccCCCCHHHHHHHhhhhhceeeeCCCceeecCCCC
Q 010631 81 MHWPGKKLREKALRNAIKHIHYEDENTRYLCIGPVNKVLNMLCCWVEDPNSEAFKLHIPRINDYLWIAEDGMKVQGYNGS 160 (505)
Q Consensus 81 ~~~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~pv~~~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~q~~~~s 160 (505)
++||.+-+|++|++.++++|++||++|+|+|++||+++++||+||.++|++..+++|+.+++||+|+++|||+||++| |
T Consensus 337 ~rWp~~~~R~~a~~~~me~ihyede~t~yi~ig~v~k~~~ml~cwvedp~s~~Fkkhl~Ri~d~lw~gedGmkmq~~~-s 415 (760)
T KOG0497|consen 337 NRWPLKLIREKALRTAMELIHYEDENTRYITIGPVNKAFNMLACWVEDPNSDAFKKHLARIPDFLWIAEDGMKMQGFN-S 415 (760)
T ss_pred hhhhhHHHHHHHHHHHHHHhhhhhcccCceecccchhhhcceeeeeeccchHHHHHHhccccCeEEEcCCCceEeecc-h
Confidence 999985669999999999999999999999999999999999999999999999999999999999999999999996 9
Q ss_pred ChhHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHHHhH
Q 010631 161 QLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASL 240 (505)
Q Consensus 161 ~vwDTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL~ 240 (505)
|+|||+|+++||.++++.+++.+.++||.+||.++|++++++||...++||.++|||+||+.+++||++||||+++.+++
T Consensus 416 Q~Wdt~falqalla~~~~~E~~~~l~k~~~yl~~sQv~~n~~gd~~~~yR~~~kG~wtfS~~d~gw~vsDctaEal~~~l 495 (760)
T KOG0497|consen 416 QLWDTAFALQALLAAGLVDEFRSTLVKAYDFLKKSQVRENPPGDFKKMYRHISKGGWTFSDRDQGWPVSDCTAEALKCCL 495 (760)
T ss_pred hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcccccCCCcchhhheeccccccccccccccceeeccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHh
Q 010631 241 LLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSF 320 (505)
Q Consensus 241 ~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~ 320 (505)
.+...+..++|+.++.+++.+||+.|+.+|+.+||+.+++..++..|++.+||+|+|+++++++++++||+.+|.+|..+
T Consensus 496 ll~~~~~~~vg~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~F 575 (760)
T KOG0497|consen 496 LLSSMPSEIVGEKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQALVYF 575 (760)
T ss_pred HhcCCChhhccCCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHHHHHhh
Confidence 78777777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCC
Q 010631 321 KKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSG 400 (505)
Q Consensus 321 ~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DG 400 (505)
.+.+|+||.++|...|.+|++||++.|.+||||+|.||+|++|+|++++.||.++|..+.+.++++|||+||++.|++||
T Consensus 576 ~k~~p~~r~~Ei~~~i~~av~~ie~~Q~~DGSWyGsWgvCFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~~G 655 (760)
T KOG0497|consen 576 HKLFPGHRKKEIEKSIEKAVEFIEKLQLPDGSWYGSWGVCFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQNPDG 655 (760)
T ss_pred cccCccHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHhhhcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCcccceeccccccc
Q 010631 401 GWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFNRNCMIS 480 (505)
Q Consensus 401 gWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~w~~~~~~g~f~~~~~~~ 480 (505)
||||++.||+.++|++++|..|.+++|+|||++|+.+|+++.||-+++||++.|++.|.++|.|+++.+.|+|+++|+|+
T Consensus 656 GWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~nGdfpqq~i~g~f~~~~~~~ 735 (760)
T KOG0497|consen 656 GWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLENGDFPQQEIEGVFNKNCMIH 735 (760)
T ss_pred CCccccccCccccccccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccccCCcchhHHHHHhhhhhhhc
Confidence 99999999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred cCCchhhHHHHHHHHHHHHhhh
Q 010631 481 YSAYRNIFPIWALGEYRCRVLE 502 (505)
Q Consensus 481 y~~y~~~fpl~AL~~y~~~~~~ 502 (505)
|+.||++||||||++|++.+..
T Consensus 736 y~~yr~~F~~waL~~y~~~~~~ 757 (760)
T KOG0497|consen 736 YPTYRNIFPIWALGEYRKAYRL 757 (760)
T ss_pred cchhhhhccHHHHHHHHHHhhh
Confidence 9999999999999999998754
No 4
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=100.00 E-value=1.6e-105 Score=875.41 Aligned_cols=483 Identities=42% Similarity=0.753 Sum_probs=441.9
Q ss_pred CceeecchHHHHHHHhhCCCcCcCCcchhhhhhhcccCCCCCCCchhhhcccccccCCCCCchHHHHHHHHHHHHhhhhc
Q 010631 1 MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYPHPLIQDVLWATLDKVVEPLL 80 (505)
Q Consensus 1 ~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~l~~el~~~~~~~~~~~~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 80 (505)
||||+|+|||||+||+++||++|++|++.+||+|||++||++|+|.+.|+.|+++|+|.|+++++.+++..+. .+++
T Consensus 150 ~~~~~R~v~~p~~~l~~~r~~~~~~~~~~~l~~EL~~~~~~~~~~~~~~~~~~~~d~~~p~~~~~~~~~~~l~-~~~~-- 226 (634)
T TIGR03463 150 FYCHTRMVYLPMSWLYGRRARAPLTPLRAALRQELYDGGYGQVDFVAARERVAPTDVFTPRTFWLRAANQVMY-GYER-- 226 (634)
T ss_pred HHHHhHHHHHhHHHHhcCCcccCCCcchhhhhHHhccCCccccccccccCccccccccCCcHHHHHHHHHHHH-Hhhc--
Confidence 6999999999999999999999999999999999999999999999999999999999999987777765553 3443
Q ss_pred cCCCChHHHHHHHHHHHHHHhhccCCcceeeechhhhhhhhheecccCCCCHHHHHHHhhhhhceeeeCC-CceeecCCC
Q 010631 81 MHWPGKKLREKALRNAIKHIHYEDENTRYLCIGPVNKVLNMLCCWVEDPNSEAFKLHIPRINDYLWIAED-GMKVQGYNG 159 (505)
Q Consensus 81 ~~~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~pv~~~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-g~~~q~~~~ 159 (505)
+++.++|++|+++++++|+.|+++|+|.+|+||+++++||++++++||||.+++|+++|++|+|.+++ |+++|+| .
T Consensus 227 --~~~~~lr~~A~~~~~~~i~~~~~~~~~~~i~p~~~~~~~l~~~g~~~~~p~~~k~l~~l~~~~~~~~~~g~~~q~~-~ 303 (634)
T TIGR03463 227 --LAGKQLRARALDFCLEQIRAEDEATHYICISPVNGVLNMLAWFAVNPDGPEVAAHLEGLEDYRYEDDDRGLRYNGY-N 303 (634)
T ss_pred --cCCHHHHHHHHHHHHHHHHHHhcCCCeEehHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhEEEcCCCCEEEeeC-C
Confidence 24467999999999999999999999999999999999999999999999999999999999999999 8999999 6
Q ss_pred CChhHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHHH
Q 010631 160 SQLWDTAFAVQAIISTNLV-EEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKA 238 (505)
Q Consensus 160 s~vwDTa~a~~AL~~ag~~-~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~a 238 (505)
|++||||++++||.++|+. +++++.++||++||+++|++++ +|||..++|+.++|||+|++.|++|||+||||++|+|
T Consensus 304 s~~WDTala~~AL~e~g~~~~~~~~~l~kA~~wL~~~Q~~~~-~gd~~~~~~~~~~GGW~f~~~~~~~pdsD~Ta~~L~A 382 (634)
T TIGR03463 304 SSEWDTAFAVQALAATPETAGRHRRMLERAARFLEANQMLED-TAEPQRFFRDPAKGGWCFSDGDHGWPVSDCTAEALSA 382 (634)
T ss_pred CCchhHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHhcCCcC-CCCchhcCCCCCCCccccccCCCCCCccccHHHHHHH
Confidence 7779999999999999964 3567999999999999999874 5899999999999999999999999999999999999
Q ss_pred hHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHH
Q 010631 239 SLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALT 318 (505)
Q Consensus 239 L~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~ 318 (505)
|+.++..... ....+..+++++|++||++|||+||||++|+.+++..|+|++||+|+|+++++|++++++|++||++|.
T Consensus 383 l~~~~~~~~~-~~~~~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~ 461 (634)
T TIGR03463 383 SLVLEPLGLN-PEERVPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALA 461 (634)
T ss_pred HHHHhhcCCc-ccccccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHH
Confidence 9876542110 001245789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCC
Q 010631 319 SFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRP 398 (505)
Q Consensus 319 ~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~ 398 (505)
.++...+.++.++|+++|+||++||++.|++||+|+++||+|++|+|++++.||.++|.+ ..++.++||++||+++|++
T Consensus 462 ~~~~~~~~~~~~~i~~ai~rav~~L~~~Q~~dGsW~g~Wg~~~~Y~T~~al~aL~~~G~~-~~~~~i~rA~~~Ll~~Q~~ 540 (634)
T TIGR03463 462 AWRKHHPHVPDGRITRAISRGVRFLRSRQREDGSFPGSWGVCFTYGTFHGVMGLRAAGAS-PDDMALQRAAAWLRSYQRA 540 (634)
T ss_pred HHhhcCcchhhhHHHHHHHHHHHHHHHhcCCCCCccccCCCCCcHHHHHHHHHHHHcCCC-cCcHHHHHHHHHHHHccCC
Confidence 998766666667888999999999999999999999999999999999999999999987 5789999999999999999
Q ss_pred CCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCcccceeccccc
Q 010631 399 SGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFNRNCM 478 (505)
Q Consensus 399 DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~w~~~~~~g~f~~~~~ 478 (505)
||||++.+.+|.++.|.+ ++.|++++|||||+||+.+|..+ ..+++||++||+++|++||+|+++.+||+||++||
T Consensus 541 DGgWg~~~~s~~~~~y~~--~~~S~~~~TA~Al~aL~~~g~~~--~~~i~rgi~~L~~~Q~~dG~W~~~~~~G~f~~~~~ 616 (634)
T TIGR03463 541 DGGWGEVYESCLQARYVE--GKQSQAVMTSWALLALAEAGEGG--HDAVQRGVAWLRSRQQEDGRWPREPINGVFFGTAM 616 (634)
T ss_pred CCCccCccCccccccccC--CCCCcHHHHHHHHHHHHHcCCcC--CHHHHHHHHHHHHhCCCCCCCCCCceeeeeCccee
Confidence 999999999999888874 56799999999999999998763 34699999999999999999999999999999999
Q ss_pred cccCCchhhHHHHHHHHH
Q 010631 479 ISYSAYRNIFPIWALGEY 496 (505)
Q Consensus 479 ~~y~~y~~~fpl~AL~~y 496 (505)
|+||+||++|||||||+|
T Consensus 617 l~Y~~Y~~~fpl~ALg~y 634 (634)
T TIGR03463 617 LDYDLYLRYFPTWALAVC 634 (634)
T ss_pred EecCccchHhHHHHhhcC
Confidence 999999999999999997
No 5
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=100.00 E-value=8.2e-94 Score=789.33 Aligned_cols=481 Identities=54% Similarity=0.962 Sum_probs=431.9
Q ss_pred CceeecchHHHHHHHhhCCCcCcCCcchhhhhhhcccCCCCCCCchhhhcccccccCCCCCchHHHHHHHHHHHHhhhhc
Q 010631 1 MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYPHPLIQDVLWATLDKVVEPLL 80 (505)
Q Consensus 1 ~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~l~~el~~~~~~~~~~~~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 80 (505)
||||+|+||+||+||+++||++|.++++..+|+|||++||++|+|..+|+ ++.|.+.|+++++..+...+ +.++.
T Consensus 153 ~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~-- 227 (634)
T cd02892 153 FWCWARTVYVPMSYLYGKRPVAPITPLVLSLRDELYVEPYEKINWYKHRN--DLYDYRPPWQRLFDALDRLL-HWYEP-- 227 (634)
T ss_pred HHHHHHHHHHhHHHHhcCCcccCCCCccccchHHhCCCCccccccccccc--ccccCCCChHHHHHHHHHHH-HHHHh--
Confidence 69999999999999999999999999989999999999999999999998 78888888777666665444 33443
Q ss_pred cCCCChHHHHHHHHHHHHHHhhccCCcceeeechhhhhhhhheecccC-CCCHHHHHHHhhhhhceeeeCCCceeecCCC
Q 010631 81 MHWPGKKLREKALRNAIKHIHYEDENTRYLCIGPVNKVLNMLCCWVED-PNSEAFKLHIPRINDYLWIAEDGMKVQGYNG 159 (505)
Q Consensus 81 ~~~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~pv~~~l~~l~~~~~~-~~~~~~~~~~~~l~~~~~~~~~g~~~q~~~~ 159 (505)
.+++++|++|+++++++|..+|+++|+++..|++++++|++++..+ |++|.+++|++++.+|+|..++|++++.+|+
T Consensus 228 --~~~~~lr~~a~~~~~~~i~~~q~~~g~~~~~~~~~~l~~lal~~~g~~~~~~~~~~l~~l~~~~~~~~~g~~~~~~~~ 305 (634)
T cd02892 228 --LPPKPLRRKALRKAYEWILYRDENTGYLGIIPPPKANNMLALWVLGYPDSPAFKRHLERIDDFLWLGPEGMKMCQTNG 305 (634)
T ss_pred --cCcHHHHHHHHHHHHHHHHHHhcCCCceeeeehHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcEEEecCCcEEEcCCC
Confidence 3456799999999999999999999999999999999999997655 8999999999999999999988987777779
Q ss_pred CChhHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHHHh
Q 010631 160 SQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKAS 239 (505)
Q Consensus 160 s~vwDTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL 239 (505)
|++|||||+++||.++|+.++.++.++||++||+++|+.+ .+|||..++++.++|||+|++.+++|||+||||++++||
T Consensus 306 s~~wDTala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~-~~gdw~~~~~~~~~GGW~fs~~~~~~pd~d~Ta~~l~AL 384 (634)
T cd02892 306 SQVWDTALAVQALLEAGLAPEFDPALKKALDWLLESQILD-NPGDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKAL 384 (634)
T ss_pred CchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHcCC-CCCchhhhCCCCCCCCCCCCCCCCCCCCcCchHHHHHHH
Confidence 9999999999999999987667899999999999999843 579999999999999999999999999999999999999
Q ss_pred HHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHH
Q 010631 240 LLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTS 319 (505)
Q Consensus 240 ~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~ 319 (505)
+.+...++. |..++.+++++|++||+++||+||||++|+.+++..|++.++|.+.|++.++|++++++|++||++|..
T Consensus 385 ~~~~~~~~~--~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~ 462 (634)
T cd02892 385 LRLQELPPF--GEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGL 462 (634)
T ss_pred HHhhccCCc--chhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHH
Confidence 887654321 234667999999999999999999999999998888788888899999999999999999999999999
Q ss_pred hhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCC
Q 010631 320 FKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPS 399 (505)
Q Consensus 320 ~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~D 399 (505)
++...+.++. +|++.++||++||++.|++||+|+++||++++|+|++++.||..+|..+..++.++++++||+++|++|
T Consensus 463 ~~~~~~~~r~-~i~~~i~rAv~~L~~~Q~~DGsW~g~wg~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~D 541 (634)
T cd02892 463 FGKLYPGHRR-EIDPAIRRAVKYLLREQEPDGSWYGRWGVCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPD 541 (634)
T ss_pred hcccCcchHH-HHHHHHHHHHHHHHHccCCCCCccccCCCccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCCC
Confidence 9876555544 778899999999999999999999999999999999999999999976456789999999999999999
Q ss_pred CCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCcccceecccccc
Q 010631 400 GGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFNRNCMI 479 (505)
Q Consensus 400 GgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~w~~~~~~g~f~~~~~~ 479 (505)
|||++++.+|.++.|.+ ++.+++++|||||++|+.++..+ ...++++++||+++|+++|+|.++++||+|+++|||
T Consensus 542 GgWge~~~s~~~~~~~~--~~~s~~~~TA~AllaLl~~g~~~--~~~i~r~i~wL~~~Q~~~G~w~~~~~~g~~~~~~~~ 617 (634)
T cd02892 542 GGWGESYLSYEDKSYAG--GGRSTVVQTAWALLALMAAGEPD--SEAVERGIKYLLNTQLPDGDWPQEEITGVGFPNFYI 617 (634)
T ss_pred CCCCCccccccCcccCC--CCCCcHHHHHHHHHHHHHcCCCC--hHHHHHHHHHHHHcCCCCCCCCCcccccccCCCeee
Confidence 99999999988887753 56799999999999999998763 456999999999999999999999999996666999
Q ss_pred ccCCchhhHHHHHHHHH
Q 010631 480 SYSAYRNIFPIWALGEY 496 (505)
Q Consensus 480 ~y~~y~~~fpl~AL~~y 496 (505)
+||+||++|||||||+|
T Consensus 618 ~y~~Y~~~fpl~ALg~y 634 (634)
T cd02892 618 RYHNYRNYFPLWALGRY 634 (634)
T ss_pred ccCchhhHhHHHHhhcC
Confidence 99999999999999997
No 6
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=100.00 E-value=7.7e-93 Score=774.85 Aligned_cols=455 Identities=29% Similarity=0.443 Sum_probs=397.4
Q ss_pred CceeecchHHHHHHHhhCCCcCcCCcchhhhh-hhcccCCCCCCCchhhhcccccccCCCCCch-HHHHHHHHHHHHhhh
Q 010631 1 MWCHCRMVYLPMSYLYGKRFVGPITPTVLALR-KELFTVPYHEIDWNEARNLCAKEDLYYPHPL-IQDVLWATLDKVVEP 78 (505)
Q Consensus 1 ~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~l~-~el~~~~~~~~~~~~~r~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~ 78 (505)
||||+|+|+|||+||+++||+++++. ++| +|||++|+++ .|+.+++.| +++ ++..+...+ +.+++
T Consensus 169 ~~~~~R~~~~P~~~l~~~r~~~~~~~---~~~~~eL~~~~~~~-----~~~~~~~~~----~~~~~~~~~~~~l-~~~~~ 235 (635)
T TIGR01507 169 FSSWARATVVPLSIVCSRKPVFPLPE---RARVPELYETDVPK-----PRRRGAKGG----TGWGIFDALDRAL-HGYEK 235 (635)
T ss_pred HHHHHHHHHHHHHHHhcCCCccCCCc---ccChHhhcCCChHH-----hcccCCccC----CcHHHHHHHHHHH-HHHHh
Confidence 69999999999999999999998763 455 9999999854 456566555 234 444444434 34444
Q ss_pred hccCCCChHHHHHHHHHHHHHHhhccCCcc-eeeechhhhhhhhhee---cccCCCCHHHHHHHhhhhhceeeeCCCcee
Q 010631 79 LLMHWPGKKLREKALRNAIKHIHYEDENTR-YLCIGPVNKVLNMLCC---WVEDPNSEAFKLHIPRINDYLWIAEDGMKV 154 (505)
Q Consensus 79 ~~~~~~~~~~r~~a~~~~~~~~~~~~~~~~-~~~~~pv~~~l~~l~~---~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~ 154 (505)
.++.++|++|++++++||+.++++++ |.++.| ++++||.+ .+..|+||.++||+++|++|+|..++|+++
T Consensus 236 ----l~~~~lr~~A~~~a~~~i~~~~e~~g~~~~i~p--~~~~~l~~l~~~g~~~~~~~~~~~l~~l~~~~~~~~~g~~~ 309 (635)
T TIGR01507 236 ----LSVHPFRRAAEIRALDWLLERQAGDGSWGGIQP--AMFNALIALKILGMTQHDAFIKLGWEGIDLYGVELDDSWMF 309 (635)
T ss_pred ----cCCcHHHHHHHHHHHHHHHHHHcCCCceeecch--HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHheEecCCceEe
Confidence 33457999999999999999998887 888888 33343333 355699999999999999999998899999
Q ss_pred ecCCCCChhHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHH
Q 010631 155 QGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSE 234 (505)
Q Consensus 155 q~~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~ 234 (505)
|++ +|++|||+++++||.++|++++ ++.++||.+||+++|++. +|||.+++++..+|||+|++.+++|||+||||+
T Consensus 310 ~~~-~s~vWDTa~ai~AL~~ag~~~~-~p~l~kA~~~L~~~Qi~~--~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~ 385 (635)
T TIGR01507 310 QAC-VSPVWDTALAVLALREAGLPAD-HDALVKAGEWLLDKQITV--PGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAV 385 (635)
T ss_pred cCC-CCcHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHhhcccC--CCCccccCCCCCCCccCCCCCCCCCCCchhHHH
Confidence 999 9999999999999999998766 789999999999999974 699999999999999999999999999999999
Q ss_pred HHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCC--cccccCCCcchHH
Q 010631 235 GLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGD--IVIDYPCVECTSA 312 (505)
Q Consensus 235 al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~--~~~d~~~~~~Ta~ 312 (505)
+|+||..+. .+ ..+..++++++|++||+++||+||||++|+.+++..|++++| |++ +++|++++++|++
T Consensus 386 ~L~AL~~~~-~~----~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~----f~d~~~~~D~~~~d~Ta~ 456 (635)
T TIGR01507 386 VVWALNGLR-LP----DERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIP----FCDFGAVTDPPTADVTAR 456 (635)
T ss_pred HHHHHHHcC-CC----ccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCC----ccccccccCCCCccHHHH
Confidence 999998652 22 123457899999999999999999999999999999999998 655 7899999999999
Q ss_pred HHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Q 010631 313 SIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFL 392 (505)
Q Consensus 313 vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L 392 (505)
||++|+.++.. . .+++|+||++||++.|++||+|+|+||+||+|+|++++.||..+|.. ..++.|+||++||
T Consensus 457 ~l~al~~~g~~-~------~~~~i~rav~~L~~~Q~~dG~W~g~wg~~~~Y~T~~al~aL~~~g~~-~~~~~i~rAv~wL 528 (635)
T TIGR01507 457 VLECLGSFGYD-D------AWPVIERAVEYLKREQEPDGSWFGRWGVNYLYGTGAVLSALKAVGID-TREPYIQKALAWL 528 (635)
T ss_pred HHHHHHHhCCC-c------hhHHHHHHHHHHHHccCCCCCCccCCCCccccHHHHHHHHHHHcCCC-cccHHHHHHHHHH
Confidence 99999987632 1 15789999999999999999999999999999999999999999987 6789999999999
Q ss_pred HhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCcccce
Q 010631 393 LSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGV 472 (505)
Q Consensus 393 ~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~w~~~~~~g~ 472 (505)
+++|++||||+|++.+|.++.|.+ .+.|++++|||||+||..++..+ ..+|+||++||+++|++||+|.++.+||+
T Consensus 529 ~~~Q~~DGGWge~~~sy~~~~~~g--~g~s~~s~TA~AL~AL~~ag~~~--~~~I~rav~~L~~~Q~~dG~W~e~~~~g~ 604 (635)
T TIGR01507 529 ESHQNPDGGWGEDCRSYEDPAYAG--KGASTASQTAWALIALIAAGRAE--SEAARRGVQYLVETQRPDGGWDEPYYTGT 604 (635)
T ss_pred HHhcCCCCCCCCCCcccccccccC--CCCCcHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHHHhcCCCCCCCCcccccC
Confidence 999999999999999999888864 35799999999999999999763 35699999999999999999999999999
Q ss_pred -eccccccccCCchhhHHHHHHHHHHHH
Q 010631 473 -FNRNCMISYSAYRNIFPIWALGEYRCR 499 (505)
Q Consensus 473 -f~~~~~~~y~~y~~~fpl~AL~~y~~~ 499 (505)
||++|||+||+||++|||||||+|++.
T Consensus 605 gfp~~~yi~Y~~Y~~~fpl~ALg~y~~~ 632 (635)
T TIGR01507 605 GFPGDFYLGYHMYRHVFPLLALARYKQA 632 (635)
T ss_pred cccceeeecccchhhHhHHHHHHHHHHh
Confidence 999999999999999999999999984
No 7
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=100.00 E-value=9.6e-93 Score=774.10 Aligned_cols=464 Identities=44% Similarity=0.838 Sum_probs=404.7
Q ss_pred CceeecchHHHHHHHhhCCCcCcCCcchhhhhhhcccCCCCCCCchhhhcccccccCCCCCchHHHHHHHHHHHHhhhhc
Q 010631 1 MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYPHPLIQDVLWATLDKVVEPLL 80 (505)
Q Consensus 1 ~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~l~~el~~~~~~~~~~~~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 80 (505)
+|||+|+|++||+|++++|++.|.+| |+|||++| +++ .+.|+.+++.|+|+|++++.+.++..+.. +
T Consensus 153 ~w~~~~~v~l~~~~~~~~~~~~~~~~-----~~el~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 219 (621)
T TIGR01787 153 SWCRCRMVYLPMSYCYGERLSAPIDP-----REELYVED-DSI--RAQRNNVAKEDLYTPHSWLLRALYGLLNL-----F 219 (621)
T ss_pred hhhhhhhHHHHHHHHcCccccCCCCc-----chhhcCCC-cch--hhccCCCCcccccccHHHHHHHHHHHHhh-----c
Confidence 69999999999999999999988877 69999999 777 46788899999999988876655433322 1
Q ss_pred cCCC-ChHHHHHHHHHHHHHHhhccCCcceeeechhhhhhhhheecccC-CCCHHHHHHHhhhhhceeeeCCCceeecCC
Q 010631 81 MHWP-GKKLREKALRNAIKHIHYEDENTRYLCIGPVNKVLNMLCCWVED-PNSEAFKLHIPRINDYLWIAEDGMKVQGYN 158 (505)
Q Consensus 81 ~~~~-~~~~r~~a~~~~~~~~~~~~~~~~~~~~~pv~~~l~~l~~~~~~-~~~~~~~~~~~~l~~~~~~~~~g~~~q~~~ 158 (505)
.... .++++++|+++++++|+. ++ |++||+++++|++++..+ ||||.+++|+++|++|+|..+||+++|+|
T Consensus 220 ~~~~~~~~a~~~a~~~~~~~~~~----~g--~~~~i~~~~~~~al~~~g~~d~p~~~~~l~~l~~~~~~~~dg~~~q~~- 292 (621)
T TIGR01787 220 YHPFLRKALRKRALQWLYEHIAA----DG--SIGPISKAMAMLALWFLDGPNSPAFQKHLQRIDDYLWLQLDGMKMQGT- 292 (621)
T ss_pred ccccccHHHHHHHHHHHHHHhcc----CC--CchhHhHHHHHHHHHHcCCCCCHHHHHHHHHHhhcEEEeCCccEEecC-
Confidence 2211 234566666666666553 33 788999999999997665 79999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHH
Q 010631 159 GSQLWDTAFAVQAIISTNL--VEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGL 236 (505)
Q Consensus 159 ~s~vwDTa~a~~AL~~ag~--~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al 236 (505)
+|+||||+|+++||.++|. .++.++.++||++||+++|++++++|||..+.++..+|||+|++.|++|||+|||+.++
T Consensus 293 ~s~vWDTalai~AL~~ag~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~~~~pGgW~fs~~~~~~PdvdDta~~~ 372 (621)
T TIGR01787 293 GSQVWDTAFAIQALRESGDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVYRHNLKPGGWAFSFLNCGYPDVDDTAVVA 372 (621)
T ss_pred CCcHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhhCCCCCCCcccCccCCCCCCCchhHHHHH
Confidence 9999999999999999995 34568999999999999999987789999877777789999999999999999999998
Q ss_pred HHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHH
Q 010631 237 KASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQA 316 (505)
Q Consensus 237 ~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~a 316 (505)
+++..+... +.++..+++++|++||+++||+||||++|+.+++..|++++||.|+|++.++|++++++|++||++
T Consensus 373 la~~l~~~~-----~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~a 447 (621)
T TIGR01787 373 LKAVLLLQE-----DEHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQA 447 (621)
T ss_pred HHHHHhhcC-----cccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHH
Confidence 886544321 134567899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcc
Q 010631 317 LTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQ 396 (505)
Q Consensus 317 L~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q 396 (505)
|..++. +.+++++.|+||++||++.|++||+|+++||++|+|+|++++.+|..+|..+.+++.++||++||+++|
T Consensus 448 L~~~~~-----r~~~~~~~i~rAl~~L~~~Q~~DGsw~g~wg~~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q 522 (621)
T TIGR01787 448 LGAFGH-----RADEIRNVLERALEYLRREQRADGSWFGRWGVNYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQ 522 (621)
T ss_pred HHHhcC-----ccHhHHHHHHHHHHHHHHhcCCCCCCcccCCCCCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhc
Confidence 998752 223456899999999999999999999999999999999999999999976444599999999999999
Q ss_pred CCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCcccce-ecc
Q 010631 397 RPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGV-FNR 475 (505)
Q Consensus 397 ~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~w~~~~~~g~-f~~ 475 (505)
++||||||++.+|.++.|.+ .+.|++++|||||+||+.++... ..+|+||++||+++|++||+|+++.++|+ ||+
T Consensus 523 ~~DGGWge~~~s~~~~~y~~--~~~S~~s~Ta~AL~AL~~ag~~~--~~ai~rgv~~L~~~Q~~dG~w~~~~~~g~~~p~ 598 (621)
T TIGR01787 523 MPDGGWGEDCFSYEDPSYVG--SGGSTPSQTGWALMALIAAGEAD--SEAIERGVKYLLETQRPDGDWPQEYITGVGFPK 598 (621)
T ss_pred CCCCCCCcCCccccccccCC--CCCCCHHHHHHHHHHHHHcCccc--hHHHHHHHHHHHHhCCCCCCCCCccccCCCCcc
Confidence 99999999999999988875 34699999999999999998764 34699999999999999999999999999 779
Q ss_pred ccccccCCchhhHHHHHHHHHHH
Q 010631 476 NCMISYSAYRNIFPIWALGEYRC 498 (505)
Q Consensus 476 ~~~~~y~~y~~~fpl~AL~~y~~ 498 (505)
+|||+||+||++|||||||+|++
T Consensus 599 ~~~i~Y~~Y~~~fpl~ALg~y~~ 621 (621)
T TIGR01787 599 NFYLKYTNYRNIFPLWALGRYRQ 621 (621)
T ss_pred cceecccccchhhHHHHHHHHhC
Confidence 99999999999999999999974
No 8
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=100.00 E-value=1.9e-54 Score=449.86 Aligned_cols=444 Identities=30% Similarity=0.451 Sum_probs=363.3
Q ss_pred CceeecchHHHHHHHhhCCCcCcCCcchhhhhhhcccCCCCCCCchhhhcccccccCCCCCchHHHHHHHHHHHHhhhhc
Q 010631 1 MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYPHPLIQDVLWATLDKVVEPLL 80 (505)
Q Consensus 1 ~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~l~~el~~~~~~~~~~~~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 80 (505)
||||+|.+++| -+.| +-.++|+.+ ++..++++|++.....++..+.+.....
T Consensus 68 ~~~~~r~~~~p-----------~~~~----~~~~~~~~~------------~~~~~l~yp~~~~~~r~~~~~~~~~~~~- 119 (517)
T COG1657 68 MSSWARSSTVP-----------LIAP----ASDPLLTEG------------VKNVLLLYPTSGDVERLLLLLDHYFKRG- 119 (517)
T ss_pred HHHHhhhcccc-----------cccc----ccccccccc------------ccceeEEcCCcchHHHHHHHHHHHHhhc-
Confidence 68999999999 1111 224455443 2236778898875555555554443332
Q ss_pred cCCCChHHHHHHHHHHHHHHhhccCCcceeeechhhhhhhhheecc-cCCCC-HHHHHHHhhhhhceeeeCCCceeecCC
Q 010631 81 MHWPGKKLREKALRNAIKHIHYEDENTRYLCIGPVNKVLNMLCCWV-EDPNS-EAFKLHIPRINDYLWIAEDGMKVQGYN 158 (505)
Q Consensus 81 ~~~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~pv~~~l~~l~~~~-~~~~~-~~~~~~~~~l~~~~~~~~~g~~~q~~~ 158 (505)
...|+.+++.+ +.+..++.++++.. .-+.+|+++++++..... ...++ ..++++.....++.+..+.|+-+-..+
T Consensus 120 ~~~~~~~~~~~--~~a~l~~~e~Qn~d-g~w~g~v~aa~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (517)
T COG1657 120 FPAPVTSLRVR--KEAELWKLERQNDD-GSWRGIVNAASNVVLSLVVLGLDSNEPFQRRELRAEDSELVKAVGRGLAWLL 196 (517)
T ss_pred cCccchhhhhh--hhhheeeeeecccc-cccccchhhhhHHHHHHHHhhhccchHhhhhhhhhhhhhhhccccccccccc
Confidence 23345566666 33444444333332 347899998777544432 23444 678888887777777777777665556
Q ss_pred CCChhHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHHH
Q 010631 159 GSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKA 238 (505)
Q Consensus 159 ~s~vwDTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~a 238 (505)
++|+|||+|+..++..+|..+...+++.+|..||..+|+... ++|..+ ++.++|||+|+..+++|||.|+|+.++++
T Consensus 197 ~~q~wD~~f~~~~~~~~g~~~~~~~aiaka~~~L~~kq~~~~--~~~~~~-~~~~~g~W~f~~~~~~ypd~d~T~~~~~a 273 (517)
T COG1657 197 GSQVWDGGFIRRALLVAGLAETPIPAIAKALMFLLDKQVLKY--ADWAVK-RKFSPGGWGFSNINTGYPDADDTAGVVRA 273 (517)
T ss_pred ccccccchhhhhhhhhcCccccchHhHHhhhhhhHHHHHHHh--hccccc-cccCCCccceeecccCCCCchhhhHHHHH
Confidence 999999999999999999877522799999999999999874 799998 99999999999999999999999999999
Q ss_pred hHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHH
Q 010631 239 SLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALT 318 (505)
Q Consensus 239 L~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~ 318 (505)
+....+ .+.+.++++|+..|||..|||+.|+..+.+.|++.+|+++++ .|+++++++||+.++.+|+
T Consensus 274 l~~~~~-----------~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~--~~~~~s~adct~~~~~~l~ 340 (517)
T COG1657 274 LIGVQS-----------LPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVK--AMVDPSTADCTHRVVLALA 340 (517)
T ss_pred HHhhcc-----------hhhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhcc--ccccCCcccCCCccHHHHh
Confidence 876542 345667999999999999999999999999999999999876 7999999999999999999
Q ss_pred HhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCC
Q 010631 319 SFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRP 398 (505)
Q Consensus 319 ~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~ 398 (505)
.+....+.++ ...|++|++||++.|+++|+|+++|++|++|+|+.++.+|...|..+.+...++++++||.++|++
T Consensus 341 a~~~yl~~~~----~~~i~~a~e~LL~~Q~~~GsW~g~w~v~~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~ 416 (517)
T COG1657 341 ALNAYLEAYD----GQPIERALEWLLSDQEPDGSWYGRWGVCYIYGTSGALSALALVGETDENEVLVRKLISWLVSKQMP 416 (517)
T ss_pred hhhhcccccc----CCcccHHHhhhhhhccccCceeeEEEEEEEEehhhhhhhhhccCccccchHHHHHHHHHhhhcccc
Confidence 9876544221 235899999999999999999999999999999999999999998866888999999999999999
Q ss_pred CCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCcccceeccccc
Q 010631 399 SGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFNRNCM 478 (505)
Q Consensus 399 DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~w~~~~~~g~f~~~~~ 478 (505)
||||++.+.++.++.|.. .+.|.+.+|+||+.+|+.+.++ +++++++++++|+++|.++|+|.+.+.+|+|+.+|+
T Consensus 417 ~~Gw~e~~~~~~~~~~~~--t~~sl~~~~~wal~~~~~a~~~--~~~~i~~~~~~~~~~~~~~g~~~~~~~eg~~~~~~~ 492 (517)
T COG1657 417 DGGWGEAKEAISDPVYTG--TESSLLVQTNWALIALLTALEP--NQEAIKPGINLLVSDQEPDGSWREAEREGGFNCNFA 492 (517)
T ss_pred CCCccccccccccccccc--ccchhhcchhHHHHHHHHhccc--chhhhcccccccccCcCCCCccccceecccCCCCcc
Confidence 999999999999888875 2578889999999999999887 456799999999999999999999999999999999
Q ss_pred cccCCchhhHHHHHHHHHHHH
Q 010631 479 ISYSAYRNIFPIWALGEYRCR 499 (505)
Q Consensus 479 ~~y~~y~~~fpl~AL~~y~~~ 499 (505)
+.||.|+.+||+.|||+|...
T Consensus 493 ~~~~~~~~~~p~~~lg~y~~~ 513 (517)
T COG1657 493 IGYPYYLAYFPIIALGRYGGQ 513 (517)
T ss_pred eeeeeEEeecCchhhcccccc
Confidence 999999999999999999654
No 9
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=100.00 E-value=4.4e-49 Score=405.98 Aligned_cols=347 Identities=50% Similarity=0.893 Sum_probs=290.5
Q ss_pred HHHHhhhhhceeeeCCCceeecCCCCChhHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCC
Q 010631 135 KLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISK 214 (505)
Q Consensus 135 ~~~~~~l~~~~~~~~~g~~~q~~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~ 214 (505)
.+++++|.+. +++||.|... .+++|+|+++++||.++|..+++.+.++||++||+++|....+ ++|...+++.+.
T Consensus 2 ~~~~~~L~~~--Q~~dG~W~~~--~~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~-~~~~~~~~~~~~ 76 (348)
T cd02889 2 RRALDFLLSL--QAPDGHWPGE--YSQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDNP-DDWKVKYRHLRK 76 (348)
T ss_pred chHHHHHHHh--ccCCCCcccc--CCchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCCC-CchhhcCCCCCC
Confidence 5788888876 6778876422 2899999999999999998656689999999999999976543 457777888899
Q ss_pred CCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcc
Q 010631 215 GAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPA 294 (505)
Q Consensus 215 GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~ 294 (505)
|||+|+....+++++|+|+.++++|..+....+ .+..++.+.+.++++||+++|++||||..|...+...|++. +.
T Consensus 77 Ggw~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~--~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~--~~ 152 (348)
T cd02889 77 GGWAFSTANQGYPDSDDTAEALKALLRLQKKPP--DGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLEL--IP 152 (348)
T ss_pred CcCcccCcCCCCCCCCChHHHHHHHHHhhccCc--ccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhc--Cc
Confidence 999999877788999999999999987765322 12345688999999999999999999998877666566554 22
Q ss_pred cccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHHHHHH
Q 010631 295 ETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVA 374 (505)
Q Consensus 295 e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~~ 374 (505)
+.+++...+++.+.+|+++|.+|..++...+.++ +++.+.++++++||.+.|++||+|.+.|+.+++|.|++++.||..
T Consensus 153 ~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~-~~~~~~i~~a~~~L~~~q~~dG~w~~~~~~~~~y~ta~a~~aL~~ 231 (348)
T cd02889 153 EVDGDIMIDPPYVECTGSVLEALGLFGKLYPEHR-REIDPAIRRAVKYLEREQEPDGSWYGRWGVCFIYGTWFALEALAA 231 (348)
T ss_pred hhhcCCccCCCCcchHHHHHHHHHHhhhcCCchH-HHHHHHHHHHHHHHHHhCCCCCCccccCCCcchHHHHHHHHHHHH
Confidence 3355666777889999999999999886533322 356678999999999999999999999999999999999999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Q 010631 375 AGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYL 454 (505)
Q Consensus 375 ~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L 454 (505)
+|.. ...+.++++++||+++|++||||++.+..+..+.|.+ +..+++..||++|++|+.++.. +...++++++||
T Consensus 232 ~g~~-~~~~~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~~~~--~~~~~~~~Ta~al~aL~~~g~~--~~~~v~~a~~wL 306 (348)
T cd02889 232 AGED-ENSPYVRKACDWLLSKQNPDGGWGESYESYEDPSYAG--GGRSTVVQTAWALLALMAAGEP--DSEAVKRGVKYL 306 (348)
T ss_pred cCCC-cCcHHHHHHHHHHHHccCCCCCcCCcccccccccccC--CCCCcHHHHHHHHHHHHhcCCC--CHHHHHHHHHHH
Confidence 9986 5678999999999999999999998765554433332 4568899999999999999876 234699999999
Q ss_pred HhcCcCCCCCCCCcccceeccccccccCCchhhHHHHHHHHH
Q 010631 455 INSQMENGDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGEY 496 (505)
Q Consensus 455 ~~~Q~~~G~w~~~~~~g~f~~~~~~~y~~y~~~fpl~AL~~y 496 (505)
.++|+++|+|.+++.+|++++.||++|++|+++|||+|||+|
T Consensus 307 ~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (348)
T cd02889 307 LNTQQEDGDWPQEEITGVFFKNFYIRYHNYRNYFPLWALGRY 348 (348)
T ss_pred HHhcCCCCCcCCceeeeeecceeeeccCccchHhHHHHhhcC
Confidence 999999999999999999999999999999999999999986
No 10
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=100.00 E-value=2e-34 Score=315.57 Aligned_cols=305 Identities=22% Similarity=0.275 Sum_probs=219.7
Q ss_pred ChHHHHHHHHHHHHHHhhccCCcce--eeechhh-hhhhhhee--cccCCCCHHHHHHHhhhhhceeee-----------
Q 010631 85 GKKLREKALRNAIKHIHYEDENTRY--LCIGPVN-KVLNMLCC--WVEDPNSEAFKLHIPRINDYLWIA----------- 148 (505)
Q Consensus 85 ~~~~r~~a~~~~~~~~~~~~~~~~~--~~~~pv~-~~l~~l~~--~~~~~~~~~~~~~~~~l~~~~~~~----------- 148 (505)
-.+.++++++++.+++...+++ .+ .+.+||| +++++.++ .+..+++|.++|+.++|++.++..
T Consensus 285 ~~~~~~~~l~~l~~~~~~~~~g-~~~~~~~s~vWDTa~ai~AL~~ag~~~~~p~l~kA~~~L~~~Qi~~~~~w~~~~~~~ 363 (635)
T TIGR01507 285 HDAFIKLGWEGIDLYGVELDDS-WMFQACVSPVWDTALAVLALREAGLPADHDALVKAGEWLLDKQITVPGDWAVKRPNL 363 (635)
T ss_pred CCHHHHHHHHHHHHheEecCCc-eEecCCCCcHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhcccCCCCccccCCCC
Confidence 3578999999999988754333 33 3556888 45554444 344577899999999999876532
Q ss_pred -CCCceee--cCCCCChhHHHHHHHHHHhcCCCc--chHHHHHHHHHHHHhcccCCCCCCCccccccCCCC---CCCCCc
Q 010631 149 -EDGMKVQ--GYNGSQLWDTAFAVQAIISTNLVE--EYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISK---GAWPFS 220 (505)
Q Consensus 149 -~~g~~~q--~~~~s~vwDTa~a~~AL~~ag~~~--~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~---GgW~f~ 220 (505)
++|+-++ ++..+++||||+++.||...+.++ ..++++++|++||+++|+++ |.|..+.+.... +--+|.
T Consensus 364 ~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn~d---Ggw~af~~~~~~~~l~~~~f~ 440 (635)
T TIGR01507 364 EPGGWAFQFDNVYYPDVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQSSN---GGWGAFDVDNTSDLLNHIPFC 440 (635)
T ss_pred CCCccCCCCCCCCCCCchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcCCC---CCEecccCCcchhHHhcCCcc
Confidence 2333333 333489999999999999986433 34689999999999999986 444221110000 000011
Q ss_pred c--cCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccC
Q 010631 221 T--ADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFG 298 (505)
Q Consensus 221 ~--~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~ 298 (505)
+ .-..+|++|||+.+++||..+.. ...++++++|++||+++|++|||| ||
T Consensus 441 d~~~~~D~~~~d~Ta~~l~al~~~g~--------~~~~~~i~rav~~L~~~Q~~dG~W--------------------~g 492 (635)
T TIGR01507 441 DFGAVTDPPTADVTARVLECLGSFGY--------DDAWPVIERAVEYLKREQEPDGSW--------------------FG 492 (635)
T ss_pred ccccccCCCCccHHHHHHHHHHHhCC--------CchhHHHHHHHHHHHHccCCCCCC--------------------cc
Confidence 0 00135889999999999976431 123689999999999999999999 23
Q ss_pred CcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccC-----------CCCccchHHH
Q 010631 299 DIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSW-----------GVCFTYGTWF 367 (505)
Q Consensus 299 ~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~w-----------g~~~~y~T~~ 367 (505)
.+.+++ .++|++||++|...+... .++.|+||++||++.|++||||++.. |.+..+.|++
T Consensus 493 ~wg~~~--~Y~T~~al~aL~~~g~~~-------~~~~i~rAv~wL~~~Q~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~ 563 (635)
T TIGR01507 493 RWGVNY--LYGTGAVLSALKAVGIDT-------REPYIQKALAWLESHQNPDGGWGEDCRSYEDPAYAGKGASTASQTAW 563 (635)
T ss_pred CCCCcc--ccHHHHHHHHHHHcCCCc-------ccHHHHHHHHHHHHhcCCCCCCCCCCcccccccccCCCCCcHHHHHH
Confidence 333333 678999999999876421 14689999999999999999998431 3456678999
Q ss_pred HHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCccccc---ccccccCCCCCCchhHHHHHHHHHHHc
Q 010631 368 GVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQ---KKVYSNLEGDRSHVVNTAWAMLALIDA 437 (505)
Q Consensus 368 al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~---~~~y~~~~~~~s~~~~Ta~ALlaL~~a 437 (505)
+|.||.++|.. .++.|+||++||+++|++||||+|.+.+.. ...|. ..+.+.-.|.|+||..+
T Consensus 564 AL~AL~~ag~~--~~~~I~rav~~L~~~Q~~dG~W~e~~~~g~gfp~~~yi-----~Y~~Y~~~fpl~ALg~y 629 (635)
T TIGR01507 564 ALIALIAAGRA--ESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYL-----GYHMYRHVFPLLALARY 629 (635)
T ss_pred HHHHHHHhCCC--CcHHHHHHHHHHHHhcCCCCCCCCcccccCcccceeee-----cccchhhHhHHHHHHHH
Confidence 99999999965 578999999999999999999999865432 33444 34567788999999765
No 11
>PLN03012 Camelliol C synthase
Probab=100.00 E-value=3.2e-34 Score=313.05 Aligned_cols=317 Identities=15% Similarity=0.178 Sum_probs=231.0
Q ss_pred CChHHHHHHHHHHHHHHhhccCCcc-eeeechhh-hhhhhheec--ccC-CCCHHHHHHHhhhhhceeee----------
Q 010631 84 PGKKLREKALRNAIKHIHYEDENTR-YLCIGPVN-KVLNMLCCW--VED-PNSEAFKLHIPRINDYLWIA---------- 148 (505)
Q Consensus 84 ~~~~~r~~a~~~~~~~~~~~~~~~~-~~~~~pv~-~~l~~l~~~--~~~-~~~~~~~~~~~~l~~~~~~~---------- 148 (505)
|-++..+++++++.+++-..+++.. -.|.+||| +++.+.++. +-. ...|.++|+.++|++-.+..
T Consensus 386 p~~~~~k~hl~ri~d~lw~~~dGm~~q~~gSqvWDTa~~~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~ 465 (759)
T PLN03012 386 PNGDHFKKHLLRISDYLWIAEDGMKMQSFGSQLWDSGFALQALLASNLSNEIPDVLRRGHDFIKNSQVGENPSGDFKNMY 465 (759)
T ss_pred CCCHHHHHHHHHhhhcEEEeCCceEEcCCCCcHHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHhccCCCCChhhhhC
Confidence 4567889999999887753333221 13688999 466555542 222 35678999999998765531
Q ss_pred ----CCCceeecCC--CCChhHHHHHHHHH---HhcCC----CcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCC
Q 010631 149 ----EDGMKVQGYN--GSQLWDTAFAVQAI---ISTNL----VEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKG 215 (505)
Q Consensus 149 ----~~g~~~q~~~--~s~vwDTa~a~~AL---~~ag~----~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~G 215 (505)
++|+-++..| .+.+.|||.++.|+ ..... .....+.+.+|++||+++|+++ |+|..+.+... .
T Consensus 466 r~~~~GgW~Fs~~~~gyp~sD~TAe~Lka~lll~~~~~~~~~~~~~~~~l~~av~wlL~mQn~d---GGwaafe~~~~-~ 541 (759)
T PLN03012 466 RHISKGAWTFSDRDHGWQASDCTAEGFKCCLLFSMIAPDIVGPKMDPEQLHDAVNILLSLQSKN---GGMTAWEPAGA-P 541 (759)
T ss_pred CCCCCCcccccCCCCCCCCCCccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhccCCC---CCEeeecCCcc-h
Confidence 1333333222 25678899999763 32221 1123579999999999999987 66655554332 2
Q ss_pred CCC--------CcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccch
Q 010631 216 AWP--------FSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPW 287 (505)
Q Consensus 216 gW~--------f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~ 287 (505)
.|- |.+.--.++.+|||+++|+||..+++..+......+ ++.+++|++||++.|++||||
T Consensus 542 ~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i-~~~i~rAv~~L~~~Q~~DGsW----------- 609 (759)
T PLN03012 542 EWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEI-NAFIKKAAEYIENIQMLDGSW----------- 609 (759)
T ss_pred HHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhh-HHHHHHHHHHHHHhcCCCCCC-----------
Confidence 333 333333578899999999999887765443222233 679999999999999999999
Q ss_pred hcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCcc-----
Q 010631 288 LEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFT----- 362 (505)
Q Consensus 288 l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~----- 362 (505)
+|++++++. ++|++||++|..+++.+++ .++|+||++||++.|++||||+++|++|+.
T Consensus 610 ---------~G~Wgv~y~--YgT~~aL~aL~a~g~~~~~------~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~ 672 (759)
T PLN03012 610 ---------YGNWGICFT--YGTWFALAGLAAAGKTFND------CEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIA 672 (759)
T ss_pred ---------cccccccCC--cHHHHHHHHHHHhCccCCC------cHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccC
Confidence 678888884 5999999999999876543 368999999999999999999999988765
Q ss_pred --------chHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccc--cccccccCCCCCCchhHHHHHHH
Q 010631 363 --------YGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSC--QKKVYSNLEGDRSHVVNTAWAML 432 (505)
Q Consensus 363 --------y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~--~~~~y~~~~~~~s~~~~Ta~ALl 432 (505)
+.|+|||+||.++|..+.+.+.|+||++||+++|.+||+|-+..... +...|. ..+.+.-.|.|+
T Consensus 673 ~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~~~~G~F~~~~~i-----~Y~~Yr~~FPl~ 747 (759)
T PLN03012 673 QEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQQEATGAFLKNCLL-----HYAAYRNIFPLW 747 (759)
T ss_pred CCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCceeeeeeccceEE-----ecCccchHHHHH
Confidence 88999999999999875555799999999999999999998754332 222232 356678889999
Q ss_pred HHHHcC
Q 010631 433 ALIDAG 438 (505)
Q Consensus 433 aL~~ag 438 (505)
||..+.
T Consensus 748 ALg~Y~ 753 (759)
T PLN03012 748 ALAEYR 753 (759)
T ss_pred HHHHHH
Confidence 998763
No 12
>PLN02993 lupeol synthase
Probab=100.00 E-value=3.4e-32 Score=297.88 Aligned_cols=316 Identities=17% Similarity=0.194 Sum_probs=226.5
Q ss_pred CChHHHHHHHHHHHHHHhhccCCcce--eeechhh-hhhhhheec--cc-CCCCHHHHHHHhhhhhceeee---------
Q 010631 84 PGKKLREKALRNAIKHIHYEDENTRY--LCIGPVN-KVLNMLCCW--VE-DPNSEAFKLHIPRINDYLWIA--------- 148 (505)
Q Consensus 84 ~~~~~r~~a~~~~~~~~~~~~~~~~~--~~~~pv~-~~l~~l~~~--~~-~~~~~~~~~~~~~l~~~~~~~--------- 148 (505)
|-++..+++++++.+++-..+++ .+ .|.+||| +++++.++. +- ++.+|.++|+.++|++-.+..
T Consensus 386 p~~~~~~~~l~ri~d~lw~~edg-m~~q~~gSqvWDTa~a~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~ 464 (763)
T PLN02993 386 PNGDHFKKHLARIPDYMWVAEDG-MKMQSFGSQLWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSM 464 (763)
T ss_pred CCCHHHHHHHHHhhhcEEEeCCc-eEEcCCCCchHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhccCCCCCchHhh
Confidence 45678999999999977543332 22 3688999 566655553 32 367899999999998765531
Q ss_pred -----CCCceeecCC--CCChhHHHHHHHH---HHhcCC----CcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCC
Q 010631 149 -----EDGMKVQGYN--GSQLWDTAFAVQA---IISTNL----VEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISK 214 (505)
Q Consensus 149 -----~~g~~~q~~~--~s~vwDTa~a~~A---L~~ag~----~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~ 214 (505)
++|+-++..| ...+.|||.+++| |..... .....+++.+|++||+++|+++ |.|..+.+...
T Consensus 465 ~r~~~~GgW~Fs~~~~gyp~sDdTAe~lka~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~d---GG~aafe~~~~- 540 (763)
T PLN02993 465 YRHISKGAWTLSDRDHGWQVSDCTAEALKCCMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSEN---GGVTAWEPVRA- 540 (763)
T ss_pred CCCCCCCcCcCccCCCCCCcCCchHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHhhccCC---CCEEeeeCCCc-
Confidence 2333333222 3567889999985 333321 1113579999999999999986 56655443221
Q ss_pred CCCC--------CcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccc
Q 010631 215 GAWP--------FSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYP 286 (505)
Q Consensus 215 GgW~--------f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~ 286 (505)
..|- |...--.+|.+|||+.+|.+|..+.+..+......+ ++++++|++||++.|++||||
T Consensus 541 ~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ei-~~~i~rAv~yL~~~Q~~DGSW---------- 609 (763)
T PLN02993 541 YKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTKEI-IKSIEKAVQFIESKQTPDGSW---------- 609 (763)
T ss_pred hhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhhhH-HHHHHHHHHHHHHhcCCCCCc----------
Confidence 2222 111112368899999999999877653332222233 578999999999999999999
Q ss_pred hhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCcc----
Q 010631 287 WLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFT---- 362 (505)
Q Consensus 287 ~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~---- 362 (505)
+|.+++++ +++|+.||.+|..++..+++ .+.|+||++||++.|++||+|+++|.+|..
T Consensus 610 ----------~G~Wgv~y--~YgT~~aL~aL~a~G~~~~~------~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~ 671 (763)
T PLN02993 610 ----------YGNWGICF--IYATWFALGGLAAAGKTYND------CLAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYI 671 (763)
T ss_pred ----------cccccccc--CcHHHHHHHHHHHcCCCCCC------cHHHHHHHHHHHHhcCCCCCcCcCcCcCCCcccc
Confidence 45666766 56999999999998875332 268999999999999999999998866533
Q ss_pred ---------chHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccc--cccccccCCCCCCchhHHHHHH
Q 010631 363 ---------YGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSC--QKKVYSNLEGDRSHVVNTAWAM 431 (505)
Q Consensus 363 ---------y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~--~~~~y~~~~~~~s~~~~Ta~AL 431 (505)
|.|+||++||.++|..+...+.|+||++||+++|++||+|-+..... +...|+ ..+.+.-.|.|
T Consensus 672 ~~~~~~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~~~G~W~q~~~~G~F~~~~~i-----~Y~~Yr~~FPl 746 (763)
T PLN02993 672 PLEGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQLENGDFPQQEILGAFMNTCML-----HYATYRNTFPL 746 (763)
T ss_pred cCCCCCCchhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCCcceeceECcccee-----ccCccchHHHH
Confidence 89999999999999864556799999999999999999998754332 222332 35567788999
Q ss_pred HHHHHcC
Q 010631 432 LALIDAG 438 (505)
Q Consensus 432 laL~~ag 438 (505)
+||..+.
T Consensus 747 ~ALg~Y~ 753 (763)
T PLN02993 747 WALAEYR 753 (763)
T ss_pred HHHHHHH
Confidence 9997753
No 13
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=100.00 E-value=9.7e-32 Score=294.66 Aligned_cols=311 Identities=17% Similarity=0.142 Sum_probs=223.9
Q ss_pred ChHHHHHHHHHHHHHHhhccCCcce--eeechhh-hhhhhheec--cc-C-CCCHHHHHHHhhhhhceee----------
Q 010631 85 GKKLREKALRNAIKHIHYEDENTRY--LCIGPVN-KVLNMLCCW--VE-D-PNSEAFKLHIPRINDYLWI---------- 147 (505)
Q Consensus 85 ~~~~r~~a~~~~~~~~~~~~~~~~~--~~~~pv~-~~l~~l~~~--~~-~-~~~~~~~~~~~~l~~~~~~---------- 147 (505)
=++..+++++.+.+++-..++++-+ .|.+|+| ++++++++. +. + ...+.++|+.++|.+..+.
T Consensus 274 ~~p~~~k~l~~l~~~~~~~~~~g~~~q~~~s~~WDTala~~AL~e~g~~~~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~ 353 (634)
T TIGR03463 274 DGPEVAAHLEGLEDYRYEDDDRGLRYNGYNSSEWDTAFAVQALAATPETAGRHRRMLERAARFLEANQMLEDTAEPQRFF 353 (634)
T ss_pred CCHHHHHHHHHHHhhEEEcCCCCEEEeeCCCCchhHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHhcCCcCCCCchhcC
Confidence 3478999999999987543442223 4678898 567666663 32 2 2347899999999876541
Q ss_pred ---eCCCceeecCC--CCChhHHHHHHHHHHh---cCCCc---chHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCC
Q 010631 148 ---AEDGMKVQGYN--GSQLWDTAFAVQAIIS---TNLVE---EYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGA 216 (505)
Q Consensus 148 ---~~~g~~~q~~~--~s~vwDTa~a~~AL~~---ag~~~---~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~Gg 216 (505)
.++|+.++..| .+.+.|||.++.||.. .+... ..++++.+|++||+++|+++ |+|..+.++. .|.
T Consensus 354 ~~~~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~~Qn~d---GGw~~y~~~~-~~~ 429 (634)
T TIGR03463 354 RDPAKGGWCFSDGDHGWPVSDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFILSRQNED---GGFGTYERQR-GPR 429 (634)
T ss_pred CCCCCCccccccCCCCCCccccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHhcCCC---CCEeccCCCC-cHH
Confidence 13444444322 3567889999999876 33221 12579999999999999986 8887665544 456
Q ss_pred C--------CCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchh
Q 010631 217 W--------PFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWL 288 (505)
Q Consensus 217 W--------~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l 288 (505)
| .|.+...+++.+|||+.+|.+|..+....+...... ..+++++|++||++.|++||||..
T Consensus 430 ~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~-i~~ai~rav~~L~~~Q~~dGsW~g---------- 498 (634)
T TIGR03463 430 VLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGR-ITRAISRGVRFLRSRQREDGSFPG---------- 498 (634)
T ss_pred HHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhH-HHHHHHHHHHHHHHhcCCCCCccc----------
Confidence 6 233334467899999999999987654322111111 256899999999999999999942
Q ss_pred cccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCC--------
Q 010631 289 EVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVC-------- 360 (505)
Q Consensus 289 ~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~-------- 360 (505)
.+.+++ ...|+.+|++|..++.... ++.++||++||++.|++||||++.|++|
T Consensus 499 ----------~Wg~~~--~Y~T~~al~aL~~~G~~~~-------~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~ 559 (634)
T TIGR03463 499 ----------SWGVCF--TYGTFHGVMGLRAAGASPD-------DMALQRAAAWLRSYQRADGGWGEVYESCLQARYVEG 559 (634)
T ss_pred ----------cCCCCC--cHHHHHHHHHHHHcCCCcC-------cHHHHHHHHHHHHccCCCCCccCccCccccccccCC
Confidence 222233 4579999999998775322 3689999999999999999999888764
Q ss_pred ---ccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccc--cccccccCCCCCCchhHHHHHHHHHH
Q 010631 361 ---FTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSC--QKKVYSNLEGDRSHVVNTAWAMLALI 435 (505)
Q Consensus 361 ---~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~--~~~~y~~~~~~~s~~~~Ta~ALlaL~ 435 (505)
..|.|++||.||..+|.. .++.++|+++||+++|++||||.+...+. +...|. ..+.+.-.|.|+||.
T Consensus 560 ~~S~~~~TA~Al~aL~~~g~~--~~~~i~rgi~~L~~~Q~~dG~W~~~~~~G~f~~~~~l-----~Y~~Y~~~fpl~ALg 632 (634)
T TIGR03463 560 KQSQAVMTSWALLALAEAGEG--GHDAVQRGVAWLRSRQQEDGRWPREPINGVFFGTAML-----DYDLYLRYFPTWALA 632 (634)
T ss_pred CCCcHHHHHHHHHHHHHcCCc--CCHHHHHHHHHHHHhCCCCCCCCCCceeeeeCcceeE-----ecCccchHhHHHHhh
Confidence 357899999999999864 57899999999999999999999865432 233333 356677889999986
Q ss_pred H
Q 010631 436 D 436 (505)
Q Consensus 436 ~ 436 (505)
.
T Consensus 633 ~ 633 (634)
T TIGR03463 633 V 633 (634)
T ss_pred c
Confidence 4
No 14
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.97 E-value=1e-28 Score=245.51 Aligned_cols=295 Identities=29% Similarity=0.418 Sum_probs=232.0
Q ss_pred HHHHhhhhhceeeeCCCceeecCCCCChhHHHHHHHHHHhcCCC----cchHHHHHHHHHHHHhcccCCCCCCCcccccc
Q 010631 135 KLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLV----EEYGATLKKAHKYIKDSQVLEDCPGNLDFWYR 210 (505)
Q Consensus 135 ~~~~~~l~~~~~~~~~g~~~q~~~~s~vwDTa~a~~AL~~ag~~----~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~ 210 (505)
.++++.|.++ ..++|.+.++.+.+++|.|+++++++...+.. .+....++++++||.+.|..+
T Consensus 2 ~~~~~~L~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~d----------- 68 (300)
T cd00688 2 EKHLKYLLRY--PYGDGHWYQSLCGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQLSD----------- 68 (300)
T ss_pred hhHHHHHHHc--cccCCCccccCCcCcHHHHHHHHHHHHHhCCcccccccchHHHHHHHHHHHhccCCC-----------
Confidence 4678888776 45666665554589999999999999998652 245789999999999999765
Q ss_pred CCCCCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcc
Q 010631 211 HISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEV 290 (505)
Q Consensus 211 ~~~~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~ 290 (505)
|||++..... .++++.|+.++++|..+.... .++.+.++++++||+++|++||||..+......
T Consensus 69 ----G~~~~~~~~~-~~~~~~T~~~~~~l~~~~~~~------~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~----- 132 (300)
T cd00688 69 ----GGFSGWGGND-YPSLWLTAYALKALLLAGDYI------AVDRIDLARALNWLLSLQNEDGGFREDGPGNHR----- 132 (300)
T ss_pred ----CCccCCCCCC-CcchHhHHHHHHHHHHcCCcc------ccCHHHHHHHHHHHHHccCCCCCeeeecCCCCc-----
Confidence 7887765432 589999999999998765321 245788999999999999999999865422110
Q ss_pred cCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHH
Q 010631 291 LNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVK 370 (505)
Q Consensus 291 ~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~ 370 (505)
...+.+.+.+|+.++.+|..++...+ ...++++++||.+.|.+||+| ..|+.+.+|.|++++.
T Consensus 133 ---------~~~~~~~~~~t~~al~aL~~~~~~~~-------~~~~~~~~~~l~~~q~~~g~~-~~~~~~~~~~t~~~~~ 195 (300)
T cd00688 133 ---------IGGDESDVRLTAYALIALALLGKLDP-------DPLIEKALDYLLSCQNYDGGF-GPGGESHGYGTACAAA 195 (300)
T ss_pred ---------ccCCCCcccHHHHHHHHHHHcCCCCC-------cHHHHHHHHHHHHHhcCCCCc-CCCccccHHHHHHHHH
Confidence 01234567899999999999875321 257999999999999999999 7788889999999999
Q ss_pred HHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHH
Q 010631 371 GLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRA 450 (505)
Q Consensus 371 aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rg 450 (505)
+|...|.. ..+.++++++||+++|++||||+.... . ....+++..|++++.+|...+... +...++++
T Consensus 196 aL~~~~~~--~~~~~~~~~~~L~~~q~~~g~~~~~~~-------~--~~~~~~~~~~~~~~~aL~~~~~~~-~~~~~~~~ 263 (300)
T cd00688 196 ALALLGDL--DSPDAKKALRWLLSRQRPDGGWGEGRD-------R--TNKLSDSCYTEWAAYALLALGKLG-DLEDAEKL 263 (300)
T ss_pred HHHHcCCc--chHHHHHHHHHHHHhcCCCCCcCcccc-------C--CCCcCchHHHHHHHHHHHHHhhhc-CcccHHHH
Confidence 99998864 467899999999999999999986432 0 123567888999999999887531 12348999
Q ss_pred HHHHHhcCcCCCCCCCCcccceeccccccccCCchhhHHHHHHHHH
Q 010631 451 ARYLINSQMENGDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGEY 496 (505)
Q Consensus 451 v~~L~~~Q~~~G~w~~~~~~g~f~~~~~~~y~~y~~~fpl~AL~~y 496 (505)
++||+++|+++|+|...+. ..++.|.++|.|+||+.|
T Consensus 264 ~~~L~~~q~~~G~w~~~~~---------~~~~~~~t~~al~aL~~~ 300 (300)
T cd00688 264 VKWLLSQQNEDGGFSSKPG---------KSYDTQHTVFALLALSLY 300 (300)
T ss_pred HHHHHhccCCCCCcCcCCC---------CCCcchhhHHHHHHHhcC
Confidence 9999999999999998643 356678899999999864
No 15
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.96 E-value=8.3e-29 Score=271.28 Aligned_cols=306 Identities=19% Similarity=0.192 Sum_probs=214.0
Q ss_pred hHHHHHHHHHHHHHHhhccCCcce--eeechhh-hhhhhhee--cc---cCCCCHHHHHHHhhhhhceeeeC--------
Q 010631 86 KKLREKALRNAIKHIHYEDENTRY--LCIGPVN-KVLNMLCC--WV---EDPNSEAFKLHIPRINDYLWIAE-------- 149 (505)
Q Consensus 86 ~~~r~~a~~~~~~~~~~~~~~~~~--~~~~pv~-~~l~~l~~--~~---~~~~~~~~~~~~~~l~~~~~~~~-------- 149 (505)
++..+++++.+.+++-..+++. + .|.+||| +++.+.++ .+ .+.++|.++|++++|.+.....+
T Consensus 266 ~p~~~~~l~~l~~~~~~~~dg~-~~q~~~s~vWDTalai~AL~~ag~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~ 344 (621)
T TIGR01787 266 SPAFQKHLQRIDDYLWLQLDGM-KMQGTGSQVWDTAFAIQALRESGDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVY 344 (621)
T ss_pred CHHHHHHHHHHhhcEEEeCCcc-EEecCCCcHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhh
Confidence 4688899999888764333332 3 3688898 46655555 23 24678999999999987765431
Q ss_pred ------CCceeecCC-C-CChhHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCC--
Q 010631 150 ------DGMKVQGYN-G-SQLWDTAFAVQAIISTNL--VEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAW-- 217 (505)
Q Consensus 150 ------~g~~~q~~~-~-s~vwDTa~a~~AL~~ag~--~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW-- 217 (505)
+|+-++..| + ++|.||+.+++++..... .....+++++|++||+++|+++ |.|..+.+... +.|
T Consensus 345 ~~~~~pGgW~fs~~~~~~PdvdDta~~~la~~l~~~~~~~~~~~~l~~a~~~Ll~~Qn~d---GGw~ay~~~~~-~~~l~ 420 (621)
T TIGR01787 345 RHNLKPGGWAFSFLNCGYPDVDDTAVVALKAVLLLQEDEHVKRDRLRDAVNWILGMQSSN---GGFAAYDPDNT-GEWLE 420 (621)
T ss_pred CCCCCCCcccCccCCCCCCCchhHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHcCCC---CCEeeeccccc-hHHHH
Confidence 333233222 2 489999999988654422 1224689999999999999986 45543221100 001
Q ss_pred ---C---CcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhccc
Q 010631 218 ---P---FSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVL 291 (505)
Q Consensus 218 ---~---f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~ 291 (505)
+ |.+.-..+|.+|+|+.+|+||..+... .....+.+++|++||++.|++||+|.
T Consensus 421 ~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~r------~~~~~~~i~rAl~~L~~~Q~~DGsw~-------------- 480 (621)
T TIGR01787 421 LLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHR------ADEIRNVLERALEYLRREQRADGSWF-------------- 480 (621)
T ss_pred HhcchhhhccccccCCCCchHHHHHHHHHHhcCc------cHhHHHHHHHHHHHHHHhcCCCCCCc--------------
Confidence 1 121112467789999999999765321 11135789999999999999999993
Q ss_pred CcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCC-----------C
Q 010631 292 NPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGV-----------C 360 (505)
Q Consensus 292 ~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~-----------~ 360 (505)
+.+.+++ .+.|+.++.+|..++....+ .+.++||++||++.|++||+|++.+.+ .
T Consensus 481 ------g~wg~~y--~YgT~~al~aL~~~G~~~~~------~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~~~S 546 (621)
T TIGR01787 481 ------GRWGVNY--TYGTGFVLSALAAAGRTYRN------CPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVGSGGS 546 (621)
T ss_pred ------ccCCCCC--chhHHHHHHHHHHhCCcccC------CHHHHHHHHHHHhhcCCCCCCCcCCccccccccCCCCCC
Confidence 3333333 56799999999998754221 268999999999999999999876532 3
Q ss_pred ccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCccccc---ccccccCCCCCCchhHHHHHHHHHHHc
Q 010631 361 FTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQ---KKVYSNLEGDRSHVVNTAWAMLALIDA 437 (505)
Q Consensus 361 ~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~---~~~y~~~~~~~s~~~~Ta~ALlaL~~a 437 (505)
.+..|+++|.||.++|.. ..+.|+|+++||+++|++||||++...+.. ...|. ..+.+.-.|.|+||..+
T Consensus 547 ~~s~Ta~AL~AL~~ag~~--~~~ai~rgv~~L~~~Q~~dG~w~~~~~~g~~~p~~~~i-----~Y~~Y~~~fpl~ALg~y 619 (621)
T TIGR01787 547 TPSQTGWALMALIAAGEA--DSEAIERGVKYLLETQRPDGDWPQEYITGVGFPKNFYL-----KYTNYRNIFPLWALGRY 619 (621)
T ss_pred CHHHHHHHHHHHHHcCcc--chHHHHHHHHHHHHhCCCCCCCCCccccCCCCccccee-----cccccchhhHHHHHHHH
Confidence 456799999999999865 467899999999999999999998765431 22332 34567788999999764
No 16
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.95 E-value=9.2e-27 Score=234.90 Aligned_cols=269 Identities=20% Similarity=0.196 Sum_probs=197.9
Q ss_pred CChhHHHHHHHHHHhcCCC--------cchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchh
Q 010631 160 SQLWDTAFAVQAIISTNLV--------EEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDC 231 (505)
Q Consensus 160 s~vwDTa~a~~AL~~ag~~--------~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~ 231 (505)
+.++=+-++...|..++.- ++....|+++++.+++.|..| |||+..... -+++..
T Consensus 21 ~~~~p~~~~~~yl~~~~~~~~~~~~~~~~~~~~i~~g~~r~l~~q~~d---------------Gsf~~w~~~--~~s~wl 83 (297)
T cd02896 21 IKLAPTVYALRYLDTTNQWEKLGPERRDEALKYIRQGYQRQLSYRKPD---------------GSYAAWKNR--PSSTWL 83 (297)
T ss_pred HHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHhccCCC---------------CCccCCCCC--Ccchhh
Confidence 4455566677777765431 134567899999999999876 555543222 257889
Q ss_pred hHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchH
Q 010631 232 TSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTS 311 (505)
Q Consensus 232 Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta 311 (505)
||+|+++|..+++. + .++++.+++|++||+++|++||+|....+.. +.+..+....+++.++.||
T Consensus 84 TA~v~~~l~~a~~~-----~-~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~---------~~~m~gg~~~~~~~~~lTA 148 (297)
T cd02896 84 TAFVVKVFSLARKY-----I-PVDQNVICGSVNWLISNQKPDGSFQEPSPVI---------HREMTGGVEGSEGDVSLTA 148 (297)
T ss_pred HHHHHHHHHHHHHc-----C-CCCHHHHHHHHHHHHhcCCCCCeeCCCCCcc---------ChhccCCccccCCCccchH
Confidence 99999999877542 1 4678899999999999999999998532110 0111222211246688999
Q ss_pred HHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHH
Q 010631 312 ASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEF 391 (505)
Q Consensus 312 ~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~ 391 (505)
+|+.+|...+...+.. ..++...|.||++||.++|++ .+++|+++.+..||..+|.+ ...++.++
T Consensus 149 ~vl~aL~~~~~~~~~~-~~~~~~~i~rA~~yL~~~~~~---------~~~~Y~~Al~ayALal~~~~-----~~~~a~~~ 213 (297)
T cd02896 149 FVLIALQEARSICPPE-VQNLDQSIRKAISYLENQLPN---------LQRPYALAITAYALALADSP-----LSHAANRK 213 (297)
T ss_pred HHHHHHHhhhcccccc-chhhHHHHHHHHHHHHHhccc---------CCChHHHHHHHHHHHHcCCh-----hhHHHHHH
Confidence 9999999987543221 123457899999999998864 46889999999999998753 77899999
Q ss_pred HHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCcccc
Q 010631 392 LLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMG 471 (505)
Q Consensus 392 L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~w~~~~~~g 471 (505)
|+++|+.||||++.+.+ .+..+.+..+...++++||||||||+..+.. +.+.++|+||.++|+.+|+|..++.
T Consensus 214 L~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~vE~TAYALLall~~~~~----~~a~~iv~WL~~qr~~~Ggf~sTQd-- 286 (297)
T cd02896 214 LLSLAKRDGNGWYWWTI-DSPYWPVPGPSAITVETTAYALLALLKLGDI----EYANPIARWLTEQRNYGGGFGSTQD-- 286 (297)
T ss_pred HHHHhhhCCCcceeccC-cCccCCCCCCchhhhHHHHHHHHHHHhcCCc----hhHHHHHHHHHhcCCCCCCeehHHH--
Confidence 99999999999876654 2222322111223899999999999998843 3488999999999999999999987
Q ss_pred eeccccccccCCchhhHHHHHHHHH
Q 010631 472 VFNRNCMISYSAYRNIFPIWALGEY 496 (505)
Q Consensus 472 ~f~~~~~~~y~~y~~~fpl~AL~~y 496 (505)
++..|.||++|
T Consensus 287 --------------Tvval~AL~~y 297 (297)
T cd02896 287 --------------TVVALQALAEY 297 (297)
T ss_pred --------------HHHHHHHHhcC
Confidence 47999999987
No 17
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.95 E-value=8.1e-27 Score=257.67 Aligned_cols=312 Identities=21% Similarity=0.243 Sum_probs=215.3
Q ss_pred CChHHHHHHHHHHHHHHhhccCCcce--eeechhh-hhhhhheec--ccC-CCCHHHHHHHhhhhhceeee---------
Q 010631 84 PGKKLREKALRNAIKHIHYEDENTRY--LCIGPVN-KVLNMLCCW--VED-PNSEAFKLHIPRINDYLWIA--------- 148 (505)
Q Consensus 84 ~~~~~r~~a~~~~~~~~~~~~~~~~~--~~~~pv~-~~l~~l~~~--~~~-~~~~~~~~~~~~l~~~~~~~--------- 148 (505)
|-++..+++++++.+++-..++++-+ .|.+||| +++.++++. +.. ..++.+++++++|.+.....
T Consensus 275 ~~~~~~~~~l~~l~~~~~~~~~g~~~~~~~~s~~wDTala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~ 354 (634)
T cd02892 275 PDSPAFKRHLERIDDFLWLGPEGMKMCQTNGSQVWDTALAVQALLEAGLAPEFDPALKKALDWLLESQILDNPGDWKVKY 354 (634)
T ss_pred CCCHHHHHHHHHHHhcEEEecCCcEEEcCCCCchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHcCCCCCchhhhC
Confidence 44578899999999988544333322 2467788 566655553 323 56788999999998765411
Q ss_pred ----CCCceeecCC--CCChhHHHHHHHHHHhcCCCc-----chHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCC
Q 010631 149 ----EDGMKVQGYN--GSQLWDTAFAVQAIISTNLVE-----EYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAW 217 (505)
Q Consensus 149 ----~~g~~~q~~~--~s~vwDTa~a~~AL~~ag~~~-----~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW 217 (505)
++|+.++..| .+.+.|||+++.||...+... ...+.+++|++||+++|+++ |.|..+.+... +.|
T Consensus 355 ~~~~~GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~d---Ggf~~y~~~~~-~~~ 430 (634)
T cd02892 355 RHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQNSN---GGFAAFEPDNT-YHW 430 (634)
T ss_pred CCCCCCCCCCCCCCCCCCCcCchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccCCC---CCEeeecCCCc-hhh
Confidence 2233333222 256889999999999875331 24678999999999999986 66654332211 221
Q ss_pred -----CCcc---cCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhc
Q 010631 218 -----PFST---ADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLE 289 (505)
Q Consensus 218 -----~f~~---~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~ 289 (505)
+++. .-..++.+|+|+.++++|..+....+... . ..++.+++|++||++.|++||||.
T Consensus 431 ~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r-~-~i~~~i~rAv~~L~~~Q~~DGsW~------------ 496 (634)
T cd02892 431 LENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGKLYPGHR-R-EIDPAIRRAVKYLLREQEPDGSWY------------ 496 (634)
T ss_pred HhhcCchhhhcccccCCCCcchHHHHHHHHHHhcccCcchH-H-HHHHHHHHHHHHHHHccCCCCCcc------------
Confidence 0111 11235789999999999987654221100 0 113689999999999999999993
Q ss_pred ccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccC-----------C
Q 010631 290 VLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSW-----------G 358 (505)
Q Consensus 290 ~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~w-----------g 358 (505)
+.+.++ ++..|+.+|.+|...+..+. .++.+++|++||++.|++||+|++.. +
T Consensus 497 --------g~wg~~--~~Y~T~~al~AL~~~G~~~~------~~~~i~~a~~~L~s~Q~~DGgWge~~~s~~~~~~~~~~ 560 (634)
T cd02892 497 --------GRWGVC--YIYGTWFALEALAAAGEDYE------NSPYIRKACDFLLSKQNPDGGWGESYLSYEDKSYAGGG 560 (634)
T ss_pred --------ccCCCc--cHHHHHHHHHHHHHhCCccc------CcHHHHHHHHHHHhcCCCCCCCCCccccccCcccCCCC
Confidence 222222 35679999999998775311 13689999999999999999997532 1
Q ss_pred CCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccc--cccccccCCCCCCchhHHHHHHHHHHH
Q 010631 359 VCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSC--QKKVYSNLEGDRSHVVNTAWAMLALID 436 (505)
Q Consensus 359 ~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~--~~~~y~~~~~~~s~~~~Ta~ALlaL~~ 436 (505)
...++.|++++.+|..+|.. +++.++++++||+++|++||+|.+..... ....|. ..+.+.-.|.|+||..
T Consensus 561 ~s~~~~TA~AllaLl~~g~~--~~~~i~r~i~wL~~~Q~~~G~w~~~~~~g~~~~~~~~-----~y~~Y~~~fpl~ALg~ 633 (634)
T cd02892 561 RSTVVQTAWALLALMAAGEP--DSEAVERGIKYLLNTQLPDGDWPQEEITGVGFPNFYI-----RYHNYRNYFPLWALGR 633 (634)
T ss_pred CCcHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHcCCCCCCCCCcccccccCCCeee-----ccCchhhHhHHHHhhc
Confidence 23467799999999999874 57899999999999999999999864432 112333 4566788899999864
No 18
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.95 E-value=2.8e-26 Score=231.10 Aligned_cols=268 Identities=16% Similarity=0.122 Sum_probs=192.4
Q ss_pred CCChhHHHHHHHHHHhcCC-Ccc----hHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhH
Q 010631 159 GSQLWDTAFAVQAIISTNL-VEE----YGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTS 233 (505)
Q Consensus 159 ~s~vwDTa~a~~AL~~ag~-~~~----~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta 233 (505)
-|.++=.-++...|...+. .++ ....|+++++.|++.|..| |||++.......+++..||
T Consensus 20 ~~~~~p~~~~~~yl~~~~~~~~~~~~~~~~~l~~g~~~~~~~q~~d---------------Gsf~~w~~~~~~~~~wlTa 84 (292)
T cd02897 20 MVNFAPNIYVLDYLKATGQLTPEIESKALGFLRTGYQRQLTYKHSD---------------GSYSAFGESDKSGSTWLTA 84 (292)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhccCCC---------------CCeecccCCCCCcchhhHH
Confidence 3556666677777777763 221 1123555555555677765 5665432221235788999
Q ss_pred HHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHH
Q 010631 234 EGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSAS 313 (505)
Q Consensus 234 ~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~v 313 (505)
+|+++|..+.. +..++++.+++|++||+++|++||||..++...... + -+ .+.+.+++|++|
T Consensus 85 ~v~~~L~~a~~------~~~v~~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~~----~-----~~---~~~~~~~~TA~v 146 (292)
T cd02897 85 FVLKSFAQARP------FIYIDENVLQQALTWLSSHQKSNGCFREVGRVFHKA----M-----QG---GVDDEVALTAYV 146 (292)
T ss_pred HHHHHHHHHhc------cCCCCHHHHHHHHHHHHHhcCCCCCCCCCCcccChh----h-----cC---CCCCCcchHHHH
Confidence 99999987653 234678999999999999999999998664311000 0 00 123457899999
Q ss_pred HHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Q 010631 314 IQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLL 393 (505)
Q Consensus 314 l~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~ 393 (505)
+.+|...+.. . ..+.|+||++||.+.+.+ ++.+|+++.+..||..+|.. ....+.+.+.++.
T Consensus 147 l~aL~~~g~~--~-----~~~~i~~a~~yL~~~~~~---------~~~~y~~al~a~AL~~~~~~--~~~~~~~~l~~~~ 208 (292)
T cd02897 147 LIALLEAGLP--S-----ERPVVEKALSCLEAALDS---------ISDPYTLALAAYALTLAGSE--KRPEALKKLDELA 208 (292)
T ss_pred HHHHHhcCCc--c-----ccHHHHHHHHHHHHhccc---------CCCHHHHHHHHHHHHHcCCc--cHHHHHHHHHHHH
Confidence 9999988752 1 236899999999998864 46899999999999999843 3445555566677
Q ss_pred hccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCccccee
Q 010631 394 SKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVF 473 (505)
Q Consensus 394 ~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~w~~~~~~g~f 473 (505)
..++.+|+|++++.+.....|.+ .+..+++..||||||||+.++.+ +.+.+.++++||.++|+++|+|..++.
T Consensus 209 ~~~~~~~~W~~~~~~~~~~~~~~-~~~~~~ve~TAyaLlall~~~~~--~~~~~~~~v~WL~~~q~~~Ggf~sTQd---- 281 (292)
T cd02897 209 ISEDGTKHWSRPPPSEEGPSYYW-QAPSAEVEMTAYALLALLSAGGE--DLAEALPIVKWLAKQRNSLGGFSSTQD---- 281 (292)
T ss_pred hccCCCCCCCcCCCcccccccCC-CCCcchHHHHHHHHHHHHHcCCc--cHhHHHHHHHHHHHcCCCCCCcccHHH----
Confidence 77788899998755554444443 12356899999999999999742 234588999999999999999999987
Q ss_pred ccccccccCCchhhHHHHHHHHH
Q 010631 474 NRNCMISYSAYRNIFPIWALGEY 496 (505)
Q Consensus 474 ~~~~~~~y~~y~~~fpl~AL~~y 496 (505)
+++.|.||++|
T Consensus 282 ------------t~~al~AL~~y 292 (292)
T cd02897 282 ------------TVVALQALAKY 292 (292)
T ss_pred ------------HHHHHHHHHcC
Confidence 47999999987
No 19
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.93 E-value=5.5e-25 Score=226.74 Aligned_cols=248 Identities=20% Similarity=0.260 Sum_probs=180.4
Q ss_pred HHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHH
Q 010631 185 LKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVN 264 (505)
Q Consensus 185 l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~ 264 (505)
|+++++||++.|+.| |||++.. +++.+|+.++++|...... +...+.++||++
T Consensus 1 ~~~~~~~L~~~Q~~d---------------G~W~~~~-----~~~~~Ta~~~~al~~~g~~-------~~~~~~~~ka~~ 53 (348)
T cd02889 1 IRRALDFLLSLQAPD---------------GHWPGEY-----SQVWDTALALQALLEAGLA-------PEFDPALKKALE 53 (348)
T ss_pred CchHHHHHHHhccCC---------------CCccccC-----CchHHHHHHHHHHHHcCCC-------CccCHHHHHHHH
Confidence 468999999999986 8898654 5789999999998754321 225689999999
Q ss_pred HHHhcc--------------cCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchh
Q 010631 265 VIFSLQ--------------NADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQE 330 (505)
Q Consensus 265 ~Ll~~Q--------------n~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~ 330 (505)
||++.| .++|||+... ....++.++.|+.|+.+|..++...+. ...
T Consensus 54 ~l~~~q~~~~~~~~~~~~~~~~~Ggw~y~~-------------------~~~~~~~~~~Ta~~l~al~~~~~~~~~-~~~ 113 (348)
T cd02889 54 WLLKSQIRDNPDDWKVKYRHLRKGGWAFST-------------------ANQGYPDSDDTAEALKALLRLQKKPPD-GKK 113 (348)
T ss_pred HHHhcCCCCCCCchhhcCCCCCCCcCcccC-------------------cCCCCCCCCChHHHHHHHHHhhccCcc-cch
Confidence 999999 6889996211 111234567999999999988754221 123
Q ss_pred hhHHHHHHHHHHHHHhccccCCCcccCC--------------------CCccchHHHHHHHHHHcCCCCCCc------HH
Q 010631 331 DVDHCIKRAVKFIEKIQELDGSWYGSWG--------------------VCFTYGTWFGVKGLVAAGMNYSNS------SS 384 (505)
Q Consensus 331 ~i~~~i~rav~~L~~~Q~~DG~W~g~wg--------------------~~~~y~T~~al~aL~~~G~~~~~~------~~ 384 (505)
...+.++++++||++.|++||+|.+... ......|++++.+|..++.. ... +.
T Consensus 114 ~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~-~~~~~~~~~~~ 192 (348)
T cd02889 114 VSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKL-YPEHRREIDPA 192 (348)
T ss_pred hhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhc-CCchHHHHHHH
Confidence 3457899999999999999999974211 12345699999999998865 233 68
Q ss_pred HHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCCC
Q 010631 385 IRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDY 464 (505)
Q Consensus 385 i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~w 464 (505)
++|+++||++.|++||+|.... +.+..+.|++++.||..+|.... ...++++++||+++|++||+|
T Consensus 193 i~~a~~~L~~~q~~dG~w~~~~-------------~~~~~y~ta~a~~aL~~~g~~~~-~~~~~~~~~~L~~~Q~~dG~w 258 (348)
T cd02889 193 IRRAVKYLEREQEPDGSWYGRW-------------GVCFIYGTWFALEALAAAGEDEN-SPYVRKACDWLLSKQNPDGGW 258 (348)
T ss_pred HHHHHHHHHHhCCCCCCccccC-------------CCcchHHHHHHHHHHHHcCCCcC-cHHHHHHHHHHHHccCCCCCc
Confidence 9999999999999999996421 12456889999999999987533 345999999999999999999
Q ss_pred CCCcccceecccccc---ccCCchhhHHHHHHHHH
Q 010631 465 PQEEIMGVFNRNCMI---SYSAYRNIFPIWALGEY 496 (505)
Q Consensus 465 ~~~~~~g~f~~~~~~---~y~~y~~~fpl~AL~~y 496 (505)
...... +....+. .=....+.+.|.||-.+
T Consensus 259 ~~~~~~--~~~~~~~~~~~~~~~~Ta~al~aL~~~ 291 (348)
T cd02889 259 GESYES--YEDPSYAGGGRSTVVQTAWALLALMAA 291 (348)
T ss_pred CCcccc--cccccccCCCCCcHHHHHHHHHHHHhc
Confidence 864211 1100000 00123467788888764
No 20
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.89 E-value=1.5e-21 Score=193.93 Aligned_cols=244 Identities=24% Similarity=0.222 Sum_probs=179.6
Q ss_pred CCCHHHHHHHhhhhhceeeeCCCceeecC-C-CCChhHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHhcccCCCCCCCc
Q 010631 129 PNSEAFKLHIPRINDYLWIAEDGMKVQGY-N-GSQLWDTAFAVQAIISTNLV-EEYGATLKKAHKYIKDSQVLEDCPGNL 205 (505)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~~~~~g~~~q~~-~-~s~vwDTa~a~~AL~~ag~~-~~~~~~l~~A~~~L~~~Q~~~~~~Gd~ 205 (505)
.....+++++++|.++ +.++|.+.... + .+++|+|++++++|...+.. ....+.+.++++||++.|..+ |.|
T Consensus 49 ~~~~~~~~~~~~l~~~--q~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~d---G~~ 123 (300)
T cd00688 49 KADENIEKGIQRLLSY--QLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNED---GGF 123 (300)
T ss_pred cchHHHHHHHHHHHhc--cCCCCCccCCCCCCCcchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCC---CCe
Confidence 4567799999999886 45676543222 2 57899999999999998643 123678999999999999875 444
Q ss_pred cccccCCCCCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeeccccc
Q 010631 206 DFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSY 285 (505)
Q Consensus 206 ~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~ 285 (505)
....+...+ .....++++.|+.++.+|..+... ...+.+.++++||.++|++||||. .
T Consensus 124 ~~~~~~~~~-------~~~~~~~~~~t~~al~aL~~~~~~--------~~~~~~~~~~~~l~~~q~~~g~~~-~------ 181 (300)
T cd00688 124 REDGPGNHR-------IGGDESDVRLTAYALIALALLGKL--------DPDPLIEKALDYLLSCQNYDGGFG-P------ 181 (300)
T ss_pred eeecCCCCc-------ccCCCCcccHHHHHHHHHHHcCCC--------CCcHHHHHHHHHHHHHhcCCCCcC-C------
Confidence 432221110 012246889999999999765421 115789999999999999999991 0
Q ss_pred chhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccC----CCCc
Q 010631 286 PWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSW----GVCF 361 (505)
Q Consensus 286 ~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~w----g~~~ 361 (505)
. +.+++..|+.++.+|...+.. ....++++++||.+.|.+||+|...+ ....
T Consensus 182 -----------~-----~~~~~~~t~~~~~aL~~~~~~--------~~~~~~~~~~~L~~~q~~~g~~~~~~~~~~~~~~ 237 (300)
T cd00688 182 -----------G-----GESHGYGTACAAAALALLGDL--------DSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSD 237 (300)
T ss_pred -----------C-----ccccHHHHHHHHHHHHHcCCc--------chHHHHHHHHHHHHhcCCCCCcCccccCCCCcCc
Confidence 0 113456799999999887642 12579999999999999999998654 1234
Q ss_pred cchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHH
Q 010631 362 TYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALID 436 (505)
Q Consensus 362 ~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ 436 (505)
.+.|.+++.+|...+.. ...+.++++++||++.|+++|||+... ...++...|+++|+||..
T Consensus 238 ~~~~~~~~~aL~~~~~~-~~~~~~~~~~~~L~~~q~~~G~w~~~~------------~~~~~~~~t~~al~aL~~ 299 (300)
T cd00688 238 SCYTEWAAYALLALGKL-GDLEDAEKLVKWLLSQQNEDGGFSSKP------------GKSYDTQHTVFALLALSL 299 (300)
T ss_pred hHHHHHHHHHHHHHhhh-cCcccHHHHHHHHHhccCCCCCcCcCC------------CCCCcchhhHHHHHHHhc
Confidence 55678888899888753 356789999999999999999998642 234567899999999964
No 21
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=99.86 E-value=9.2e-20 Score=183.12 Aligned_cols=280 Identities=17% Similarity=0.172 Sum_probs=202.2
Q ss_pred HHHHhhhhhceeeeCCCceeecCCCCChhHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcc-cCCCCCCCccccccCCC
Q 010631 135 KLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQ-VLEDCPGNLDFWYRHIS 213 (505)
Q Consensus 135 ~~~~~~l~~~~~~~~~g~~~q~~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q-~~~~~~Gd~~~~~~~~~ 213 (505)
++|++.|.+.+- ......+....+.+|-|=+++.+|...|.... ...++++++||+++| +.+
T Consensus 2 ~~h~~~l~~~~~--~~~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~-~~~~~~~i~~l~~~q~~~~-------------- 64 (286)
T cd02890 2 EKHIKYLQRCLK--LLPSSYTSLDASRLWLLYWILSSLDLLGEDLD-DENKDEIIDFIYSCQVNED-------------- 64 (286)
T ss_pred hHHHHHHHHHhh--cCChhhhhHHhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHhhcCCC--------------
Confidence 477888877643 23444555557889999999999988776322 568999999999999 764
Q ss_pred CCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCc
Q 010631 214 KGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNP 293 (505)
Q Consensus 214 ~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~ 293 (505)
|||++.. ...+++..|..++.+|..+... ..+....+++++||.++|++||||..-.
T Consensus 65 -Ggf~~~~--~~~~~~~~T~~al~~l~llg~~-------~~~~~~~~~~~~~l~~~q~~dGgf~~~~------------- 121 (286)
T cd02890 65 -GGFGGGP--GQDPHLASTYAAVLSLAILGDD-------ALSRIDREKIYKFLSSLQNPDGSFRGDL------------- 121 (286)
T ss_pred -CCCCCCC--CCCccHHHHHHHHHHHHHcCcc-------ccchhhHHHHHHHHHHhcCCCCCcccCC-------------
Confidence 7877753 3457889999999998766431 0123346789999999999999996321
Q ss_pred ccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCC-CCccchHHHHHHHH
Q 010631 294 AETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWG-VCFTYGTWFGVKGL 372 (505)
Q Consensus 294 ~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg-~~~~y~T~~al~aL 372 (505)
. ..+++..|-.+|.+|..++... +..+++.++||.+.|++||+|.++-+ ....-.|++++.+|
T Consensus 122 ---~-----~~~d~~~ty~al~~l~ll~~~~--------~~~~~~~~~~l~~~Q~~dGGf~~~~~~es~~~~t~~av~sL 185 (286)
T cd02890 122 ---G-----GEVDTRFVYCALSILSLLNILT--------DIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAVASL 185 (286)
T ss_pred ---C-----CCchHHHHHHHHHHHHHhCCch--------hhhHHHHHHHHHHhCCCCCCcCCCCCCCCCccHhHHHHHHH
Confidence 0 1122344666777777776431 24689999999999999999987543 23344488999999
Q ss_pred HHcCCCCCCcHHHHHHHHHHHhccCCCC-CCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHH
Q 010631 373 VAAGMNYSNSSSIRKACEFLLSKQRPSG-GWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAA 451 (505)
Q Consensus 373 ~~~G~~~~~~~~i~ra~~~L~~~Q~~DG-gWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv 451 (505)
...|.. ....++++++||+++|+.+| |++.. ++..+++..|.|++-+|...+... ....++..
T Consensus 186 ~~l~~~--~~~~~~~~~~~L~~~q~~~ggGf~g~------------~~~~~d~~yt~~~~~~l~~l~~~~--~~~~~~l~ 249 (286)
T cd02890 186 ALLGRL--DLIDKERLLRWLVERQLASGGGFNGR------------PNKLVDTCYSFWVGASLKILGRLH--LIDQEKLR 249 (286)
T ss_pred HHcCCC--cccCHHHHHHHHHHhCCCCCCCcCCC------------CCCCCccchhhHHHHHHHHccccc--ccCHHHHH
Confidence 999875 46678999999999999998 66432 133567888999999998887642 23367889
Q ss_pred HHHH-hcCcCCCCCCCCcccceeccccccccCCchhhHHHHHHHH
Q 010631 452 RYLI-NSQMENGDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGE 495 (505)
Q Consensus 452 ~~L~-~~Q~~~G~w~~~~~~g~f~~~~~~~y~~y~~~fpl~AL~~ 495 (505)
+||+ .+|.++|+|...+ +..|. .|-++|.|.+|+.
T Consensus 250 ~~l~~~~q~~~Ggf~~~~--~~~~d-------~~~T~~~l~~lsl 285 (286)
T cd02890 250 EYILSCQQSEVGGFSDKP--GKPPD-------LYHTYYGLSGLSL 285 (286)
T ss_pred HHHHhhcCCCCCCcCCCC--CCCCC-------chhHHHHHHHHHc
Confidence 9999 6788999996542 22232 3457788888863
No 22
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=99.82 E-value=5.1e-19 Score=177.73 Aligned_cols=190 Identities=23% Similarity=0.253 Sum_probs=152.2
Q ss_pred CCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcc-cCCcceeeeecccccchhcccCcccccCCcccccC
Q 010631 227 PISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQ-NADGGFATYELMRSYPWLEVLNPAETFGDIVIDYP 305 (505)
Q Consensus 227 pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Q-n~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~ 305 (505)
+.+..|-.+|.+|..+.. .+....++++++||+++| ++||||+... .+++
T Consensus 25 ~~~~~~y~~l~~l~ll~~--------~~~~~~~~~~i~~l~~~q~~~~Ggf~~~~---------------------~~~~ 75 (286)
T cd02890 25 SRLWLLYWILSSLDLLGE--------DLDDENKDEIIDFIYSCQVNEDGGFGGGP---------------------GQDP 75 (286)
T ss_pred hHHHHHHHHHHHHHHhCC--------CcchHHHHHHHHHHHHhhcCCCCCCCCCC---------------------CCCc
Confidence 456677778877765542 345788999999999999 9999997431 1345
Q ss_pred CCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCccc-CCCCccchHHHHHHHHHHcCCCCCCcHH
Q 010631 306 CVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGS-WGVCFTYGTWFGVKGLVAAGMNYSNSSS 384 (505)
Q Consensus 306 ~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~-wg~~~~y~T~~al~aL~~~G~~~~~~~~ 384 (505)
++..|..++.+|..++.. ... ...++++++||.+.|++||+|.+. ++..+++.|..++.+|...|.. ..+.
T Consensus 76 ~~~~T~~al~~l~llg~~--~~~----~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~--~~~~ 147 (286)
T cd02890 76 HLASTYAAVLSLAILGDD--ALS----RIDREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNIL--TDID 147 (286)
T ss_pred cHHHHHHHHHHHHHcCcc--ccc----hhhHHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCc--hhhh
Confidence 677899999999998752 000 124678999999999999999875 4667888899999999999876 3578
Q ss_pred HHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCC-C
Q 010631 385 IRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENG-D 463 (505)
Q Consensus 385 i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G-~ 463 (505)
++++++||+++|++||||++. ++..+++..|+||+.+|...+..+ +..+++.++||+++|+.+| +
T Consensus 148 ~~~~~~~l~~~Q~~dGGf~~~------------~~~es~~~~t~~av~sL~~l~~~~--~~~~~~~~~~L~~~q~~~ggG 213 (286)
T cd02890 148 KEKLIDYILSCQNYDGGFGGV------------PGAESHGGYTFCAVASLALLGRLD--LIDKERLLRWLVERQLASGGG 213 (286)
T ss_pred HHHHHHHHHHhCCCCCCcCCC------------CCCCCCccHhHHHHHHHHHcCCCc--ccCHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999874 245688899999999999998763 3348999999999999987 6
Q ss_pred CCCC
Q 010631 464 YPQE 467 (505)
Q Consensus 464 w~~~ 467 (505)
+...
T Consensus 214 f~g~ 217 (286)
T cd02890 214 FNGR 217 (286)
T ss_pred cCCC
Confidence 6543
No 23
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=99.81 E-value=5.3e-18 Score=170.39 Aligned_cols=282 Identities=18% Similarity=0.206 Sum_probs=192.5
Q ss_pred HHHHHhhhhhceeeeCCCceeecCCCCChhHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccccccCCC
Q 010631 134 FKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHIS 213 (505)
Q Consensus 134 ~~~~~~~l~~~~~~~~~g~~~q~~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~ 213 (505)
+.+|++.+++.+-.. .....+....+.+|-|=+++.+|.--|..+ .-..++.++||.++|... .
T Consensus 3 ~~~h~~y~~~~~~~~-~~~~~~~~~~~r~~~~y~~l~~l~lL~~~~--~~~~~~~i~fl~~~q~~~--~----------- 66 (287)
T cd02894 3 LEKHIEYILSLTKKK-DDYEYILTEHLRMSGIYWGLTALDLLGQLE--RLNREEIIEFVKSCQDNE--D----------- 66 (287)
T ss_pred HHHHHHHHHHhcccc-CChhhhhHHhhHHHHHHHHHHHHHHhCCCc--hhhHHHHHHHHHHHhcCC--C-----------
Confidence 568888888875421 122333334577888888888877776543 234688999999999532 1
Q ss_pred CCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCc
Q 010631 214 KGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNP 293 (505)
Q Consensus 214 ~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~ 293 (505)
||+.-... .-|++-.|-.++.+|..+...+ .+ ++..+++++||.++|++||||..-.
T Consensus 67 -GgF~~~~~--~~~~~~~t~~a~~~L~ll~~~~------~i-~~~~~~~~~~i~~~q~~dGgf~~~~------------- 123 (287)
T cd02894 67 -GGFGGSPG--HDPHILSTLSAIQILALYDLLN------KI-DENKEKIAKFIKGLQNEDGSFSGDK------------- 123 (287)
T ss_pred -CCCCCCCC--CcchHHHHHHHHHHHHHhhhhh------hc-cHHHHHHHHHHHHHcCCCCCeecCC-------------
Confidence 55544322 1245666777777766543211 12 3368899999999999999997421
Q ss_pred ccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCC-CCccchHHHHHHHH
Q 010631 294 AETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWG-VCFTYGTWFGVKGL 372 (505)
Q Consensus 294 ~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg-~~~~y~T~~al~aL 372 (505)
.+. +.+.-|-.++.+|...+... ...++++++||.+.|++||||.++-+ ...+-.|++++.+|
T Consensus 124 ---~~e-----~d~~~ty~a~~~l~ll~~~~--------~i~~~~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cavasL 187 (287)
T cd02894 124 ---WGE-----VDTRFSYCAVLCLTLLGKLD--------LIDVDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGAL 187 (287)
T ss_pred ---CCC-----chHHHHHHHHHHHHHhCCcc--------hhhHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHH
Confidence 111 11222556666666654321 12479999999999999999987643 34444588999999
Q ss_pred HHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHH
Q 010631 373 VAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAAR 452 (505)
Q Consensus 373 ~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~ 452 (505)
...|.. +...++++++||+++|+++||++.. ++..+++..|.|++-+|...+... ....++..+
T Consensus 188 ~llg~~--~~~~~~~~~~~L~~~q~~~GGf~gr------------~~k~~D~~ysf~~~a~l~~l~~~~--~~~~~~l~~ 251 (287)
T cd02894 188 AILGSL--DLIDRDRLGWWLCERQLPSGGLNGR------------PEKLPDVCYSWWVLSSLKIIGRLH--WINKNKLKN 251 (287)
T ss_pred HHcCcc--cccCHHHHHHHHHHhCCCCCCcCCC------------CCCCCchhHhhHHHHHHHHhcccc--ccCHHHHHH
Confidence 999875 3345889999999999999998653 234678899999999998887653 223788899
Q ss_pred HHHhcC-cCCCCCCCCcccceeccccccccCCchhhHHHHHHHH
Q 010631 453 YLINSQ-MENGDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGE 495 (505)
Q Consensus 453 ~L~~~Q-~~~G~w~~~~~~g~f~~~~~~~y~~y~~~fpl~AL~~ 495 (505)
||+++| .++|+|...+ +..| +.|-++|.|-+|+.
T Consensus 252 ~l~~~q~~~~GGf~~~p--~~~~-------D~~ht~~~l~~Lsl 286 (287)
T cd02894 252 FILACQDEEDGGFADRP--GNMV-------DVFHTFFGLAGLSL 286 (287)
T ss_pred HHHHhcCCCCCCcCCCC--CCCC-------ChhHHHHHHHHHHh
Confidence 999998 5789997643 2233 34557788888863
No 24
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=99.80 E-value=2.8e-18 Score=168.59 Aligned_cols=227 Identities=20% Similarity=0.246 Sum_probs=160.9
Q ss_pred CCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcc
Q 010631 215 GAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPA 294 (505)
Q Consensus 215 GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~ 294 (505)
|||+.. ..+.-+++..||+|++.|..+.+. ..++.+.+.++++||++.|++||+|..-..
T Consensus 14 Gsfs~f-~~~~~~s~WLTAfv~k~f~~a~~~------i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~------------- 73 (246)
T PF07678_consen 14 GSFSAF-SSDSPSSTWLTAFVVKVFSQAKKY------IFVDENVICRAVKWLISQQQPDGSFEEDGP------------- 73 (246)
T ss_dssp SSBBSS-TTTSSBBHHHHHHHHHHHHHHTTT------S-CEHHHHHHHHHHHHHHBETTSEB--SSS-------------
T ss_pred CCeecc-ccCCcccHHHHHHHHHHHHHHHHh------hcCCHHHHHHHHHHHHHhhcCCCccccCCC-------------
Confidence 666655 333446899999999999877643 357889999999999999999999964221
Q ss_pred cccCCcccc--cCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHHHH
Q 010631 295 ETFGDIVID--YPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGL 372 (505)
Q Consensus 295 e~f~~~~~d--~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL 372 (505)
++...|-. ...+..||+|+.+|...+...+.. ...+..+++||++||++... + ....|..+.+..||
T Consensus 74 -~~~~~~~g~~~~~~~lTA~VliAL~e~~~~~~~~-~~~~~~~i~kA~~~L~~~~~-~--------~~~~Y~lAl~aYAL 142 (246)
T PF07678_consen 74 -VIHREMQGGVEDDIALTAYVLIALLEAGSLCDSE-KPEYENAINKALNYLERHLD-N--------IQDPYTLALVAYAL 142 (246)
T ss_dssp --SSGGGSGGGTHHHHHHHHHHHHHHHCHCCHTTT-HHCHHHHHHHHHHHHHHHHG-C--------TSSHHHHHHHHHHH
T ss_pred -ccccccCCCCCCCeeehHHHHHHHHhhhhhcccc-chhhHHHHHHHHHHHHHhcc-c--------cCCHHHHHHHHHHH
Confidence 11111111 123678999999999987332111 23457899999999988732 1 34688899999999
Q ss_pred HHcCCCCCCcHHHHHHHHHHHhccCCCCC---CCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHH
Q 010631 373 VAAGMNYSNSSSIRKACEFLLSKQRPSGG---WGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHR 449 (505)
Q Consensus 373 ~~~G~~~~~~~~i~ra~~~L~~~Q~~DGg---Wge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~r 449 (505)
..+| . ++...++.+-|.+....+|+ |...........+.. .+...++..||||||+++..+. .+...+
T Consensus 143 ~la~-~---~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~-~~~s~~vEtTaYaLLa~l~~~~----~~~~~~ 213 (246)
T PF07678_consen 143 ALAG-D---SPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWS-RGSSLDVETTAYALLALLKRGD----LEEASP 213 (246)
T ss_dssp HHTT-T---CHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT--SHHHHHHHHHHHHHHHHHHTC----HHHHHH
T ss_pred Hhhc-c---cchHHHHHHHHHHhhhhccccCcccCCccccccccccc-ccchHHHHHHHHHHHHHHhccc----HHHHHH
Confidence 9987 2 56778888989888777665 665432211111100 0123468899999999999843 345889
Q ss_pred HHHHHHhcCcCCCCCCCCcccceeccccccccCCchhhHHHHHHHHHH
Q 010631 450 AARYLINSQMENGDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGEYR 497 (505)
Q Consensus 450 gv~~L~~~Q~~~G~w~~~~~~g~f~~~~~~~y~~y~~~fpl~AL~~y~ 497 (505)
.++||+++|+.+|+|..++. ++..|.||++|.
T Consensus 214 iv~WL~~qr~~~Ggf~STQd----------------TvvaL~AL~~Ya 245 (246)
T PF07678_consen 214 IVRWLISQRNSGGGFGSTQD----------------TVVALQALAEYA 245 (246)
T ss_dssp HHHHHHHCTTTTSSTSSHHH----------------HHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCccCcHHH----------------HHHHHHHHHHHh
Confidence 99999999999999999987 479999999995
No 25
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=99.79 E-value=2.9e-18 Score=174.07 Aligned_cols=223 Identities=22% Similarity=0.296 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHH
Q 010631 183 ATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDS 262 (505)
Q Consensus 183 ~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~A 262 (505)
-.++|.++||.+.|... |.|.....+.. -+..+-.++.+|..+... +....+++
T Consensus 8 l~~~kh~~yl~~~~~~~---------------~~~~~~~~~~~--r~~~~y~~l~~L~lL~~~---------~~~~~~~~ 61 (316)
T PLN03201 8 LVVDKHVRYIKSLEKKK---------------DSFESVVMEHL--RMNGAYWGLTALDLLGKL---------DDVDRDEV 61 (316)
T ss_pred ccHHHHHHHHHHhCCCC---------------CCccccccccc--hHHHHHHHHHHHHHhCCC---------ccccHHHH
Confidence 35788999999988742 33432111111 112243466666555421 12345889
Q ss_pred HHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHH
Q 010631 263 VNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKF 342 (505)
Q Consensus 263 v~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~ 342 (505)
++||+++|++||||+.++. ..++...|..++.+|..+... +.+ ..++.++|
T Consensus 62 i~~l~~cq~~~GGF~~~~~---------------------~~~h~~~Ty~al~~L~ll~~~------~~i--d~~~~~~~ 112 (316)
T PLN03201 62 VSWVMRCQHESGGFGGNTG---------------------HDPHILYTLSAVQILALFDRL------DLL--DADKVASY 112 (316)
T ss_pred HHHHHHhcCCCCCcCCCCC---------------------CcccHHHHHHHHHHHHHhhhh------hhh--hHHHHHHH
Confidence 9999999999999985431 113456788888888877432 112 35789999
Q ss_pred HHHhccccCCCcc-cCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCC
Q 010631 343 IEKIQELDGSWYG-SWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDR 421 (505)
Q Consensus 343 L~~~Q~~DG~W~g-~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~ 421 (505)
|.+.|++||||.+ .++.+.+..|.+|+.+|...+.. ....++++++||+++|+.||||+.. ++.+
T Consensus 113 l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~--~~i~~~~~~~~i~scq~~dGGF~~~------------p~~e 178 (316)
T PLN03201 113 VAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRL--DKINVEKAVDYIVSCKNFDGGFGCT------------PGGE 178 (316)
T ss_pred HHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCcc--chhHHHHHHHHHHHhcCCCCCcCCC------------CCCC
Confidence 9999999999987 57777777788888888887753 3456899999999999999999874 2457
Q ss_pred CchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCcccceeccccc
Q 010631 422 SHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFNRNCM 478 (505)
Q Consensus 422 s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~w~~~~~~g~f~~~~~ 478 (505)
++...|++|+.+|...|..+. ...++.++||+++|..+|+|...+ +.+|..||
T Consensus 179 sh~g~T~caiaaL~llg~~~~--~d~~~l~~wL~~rQ~~~GGf~grp--~k~~D~cy 231 (316)
T PLN03201 179 SHAGQIFCCVGALAITGSLHH--VDKDLLGWWLCERQVKSGGLNGRP--EKLPDVCY 231 (316)
T ss_pred CccceehHHHHHHHHcCcccc--CCHHHHHHHHHHhCCCCCCcCCCC--CCCCchHH
Confidence 888889999999998886531 125677999999999999998653 34666664
No 26
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=99.74 E-value=5e-16 Score=157.69 Aligned_cols=280 Identities=17% Similarity=0.198 Sum_probs=182.6
Q ss_pred HHHHHhhhhhceeeeCCCce-eecCCCCChhHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccccccCC
Q 010631 134 FKLHIPRINDYLWIAEDGMK-VQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHI 212 (505)
Q Consensus 134 ~~~~~~~l~~~~~~~~~g~~-~q~~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~ 212 (505)
+.||++.+.+.+ ...+.+ ....+...++.+-+++.+|.--+..+ ....+++++||.++|+++
T Consensus 10 ~~kh~~yl~~~~--~~~~~~~~~~~~~~r~~~~y~~l~~L~lL~~~~--~~~~~~~i~~l~~cq~~~------------- 72 (316)
T PLN03201 10 VDKHVRYIKSLE--KKKDSFESVVMEHLRMNGAYWGLTALDLLGKLD--DVDRDEVVSWVMRCQHES------------- 72 (316)
T ss_pred HHHHHHHHHHhC--CCCCCccccccccchHHHHHHHHHHHHHhCCCc--cccHHHHHHHHHHhcCCC-------------
Confidence 678999988752 333422 11112445667745555555444322 234588999999999875
Q ss_pred CCCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccC
Q 010631 213 SKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLN 292 (505)
Q Consensus 213 ~~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~ 292 (505)
|||+-.. ...++.-.|-.++.+|..+... +.-..+++++||.++|++||||..-.
T Consensus 73 --GGF~~~~--~~~~h~~~Ty~al~~L~ll~~~---------~~id~~~~~~~l~s~Q~~dGgF~~~~------------ 127 (316)
T PLN03201 73 --GGFGGNT--GHDPHILYTLSAVQILALFDRL---------DLLDADKVASYVAGLQNEDGSFSGDE------------ 127 (316)
T ss_pred --CCcCCCC--CCcccHHHHHHHHHHHHHhhhh---------hhhhHHHHHHHHHHhcCCCCCccCCC------------
Confidence 5554322 1236677788888887755321 12235679999999999999996310
Q ss_pred cccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCC-CCccchHHHHHHH
Q 010631 293 PAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWG-VCFTYGTWFGVKG 371 (505)
Q Consensus 293 ~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg-~~~~y~T~~al~a 371 (505)
.+. .| +.-|-.++.+|...+... ...++++++||.+.|++||+|.++-+ ....-.|++++.+
T Consensus 128 ----~ge--~D---~r~ty~a~a~l~LL~~~~--------~i~~~~~~~~i~scq~~dGGF~~~p~~esh~g~T~caiaa 190 (316)
T PLN03201 128 ----WGE--ID---TRFSYCALCCLSLLKRLD--------KINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCVGA 190 (316)
T ss_pred ----CCC--cc---HHHHHHHHHHHHHhCccc--------hhHHHHHHHHHHHhcCCCCCcCCCCCCCCccceehHHHHH
Confidence 111 11 112444555555554321 12479999999999999999987532 2333348889999
Q ss_pred HHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHH
Q 010631 372 LVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAA 451 (505)
Q Consensus 372 L~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv 451 (505)
|...|..+.. ...+..+||.++|..+||+... ++...++..|.|++-+|...+... .-..++..
T Consensus 191 L~llg~~~~~--d~~~l~~wL~~rQ~~~GGf~gr------------p~k~~D~cys~w~~a~L~ll~~~~--~~d~~~l~ 254 (316)
T PLN03201 191 LAITGSLHHV--DKDLLGWWLCERQVKSGGLNGR------------PEKLPDVCYSWWVLSSLIIIDRVH--WIDKDKLA 254 (316)
T ss_pred HHHcCccccC--CHHHHHHHHHHhCCCCCCcCCC------------CCCCCchHHHHHHHHHHHHhcccc--ccCHHHHH
Confidence 9988854211 2456789999999999998754 234577889999999998887642 12267889
Q ss_pred HHHHhcCcC-CCCCCCCcccceeccccccccCCchhhHHHHHHHHHH
Q 010631 452 RYLINSQME-NGDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGEYR 497 (505)
Q Consensus 452 ~~L~~~Q~~-~G~w~~~~~~g~f~~~~~~~y~~y~~~fpl~AL~~y~ 497 (505)
+||+++|++ .|++...+-. .|. .|-++|.|-+|+...
T Consensus 255 ~~i~~~q~~~~GGf~~~p~~--~~D-------~~ht~~~l~~lsl~~ 292 (316)
T PLN03201 255 KFILDCQDDENGGISDRPDD--AVD-------VFHTFFGVAGLSLLG 292 (316)
T ss_pred HHHHHHcCCCCCCcCCCcCC--CCC-------hhHHHHHHHHHHhcC
Confidence 999999985 7998776432 332 344678888888653
No 27
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=99.74 E-value=5.4e-16 Score=156.44 Aligned_cols=282 Identities=15% Similarity=0.191 Sum_probs=184.1
Q ss_pred HHHHhhhhhceeeeCCCceeecCCCCChhHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCC
Q 010631 135 KLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISK 214 (505)
Q Consensus 135 ~~~~~~l~~~~~~~~~g~~~q~~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~ 214 (505)
.+|++.+.+.+... ...++....+.+|-+-+++.+|.--|.... ....++.++||.++|.++
T Consensus 2 ~~h~~~~~~~l~~~--p~~~~~~d~~~~~~~y~~l~~l~lL~~~~~-~~~~~~~i~~i~~~q~~~--------------- 63 (299)
T cd02893 2 EKHIKYLKKSLRQL--PSSFTSLDASRPWLLYWILHSLELLGEELD-QSYADDVISFLRRCQNPS--------------- 63 (299)
T ss_pred hHHHHHHHHHhhcC--CccccccccccHHHHHHHHHHHHHhCCccc-HHHHHHHHHHHHHhcCCC---------------
Confidence 47888887765433 333445557899999999998888765222 345788999999999865
Q ss_pred CCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcc
Q 010631 215 GAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPA 294 (505)
Q Consensus 215 GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~ 294 (505)
||++-. ...++++-.|=.|+.+|..+...+ ....-..++.++||.++|++||||..-.
T Consensus 64 GgF~~~--~~~~~h~~~Ty~A~~~L~ll~~~~------~~~~id~~~~~~~l~~~q~~dGgf~~~~-------------- 121 (299)
T cd02893 64 GGFGGG--PGQLPHLATTYAAVNALAIIGTEE------AYDVIDREALYKFLLSLKQPDGSFRMHV-------------- 121 (299)
T ss_pred CCCCCC--CCCCccHHHHHHHHHHHHHhCCch------hhhHhhHHHHHHHHHHhcCCCCCeeCCC--------------
Confidence 444332 223567777878887776654210 0112234569999999999999997431
Q ss_pred cccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCC-CccchHHHHHHHHH
Q 010631 295 ETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGV-CFTYGTWFGVKGLV 373 (505)
Q Consensus 295 e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~-~~~y~T~~al~aL~ 373 (505)
.+.. | +.-|-.++..+..++.. + ...++++++||.+.|++|||+.++-+. ...=-|++++.+|.
T Consensus 122 --~~e~--D---~r~tycava~~~lL~~~-~-------~~~~~~~~~~l~~cQ~~dGGF~~~p~~e~h~~yTfcavasL~ 186 (299)
T cd02893 122 --GGEV--D---VRGTYCAISVASLLNIL-T-------DELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCALAALA 186 (299)
T ss_pred --CCCc--h---HhHHHHHHHHHHHhCCC-c-------hhhHHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHHHHHH
Confidence 1111 1 11122223333333322 1 135789999999999999999865432 22222788999999
Q ss_pred HcCCCCCCcHHHHHHHHHHHhccCC-CCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCC-----------
Q 010631 374 AAGMNYSNSSSIRKACEFLLSKQRP-SGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAE----------- 441 (505)
Q Consensus 374 ~~G~~~~~~~~i~ra~~~L~~~Q~~-DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~----------- 441 (505)
..|.. +...+++.++||+++|.+ +||+... ++..+++..|.|++-+|...+...
T Consensus 187 llg~~--~~~d~~~l~~wl~~~q~~~~GGf~gr------------p~k~~D~cys~w~~a~l~ll~~~~~~~~~~~~~~~ 252 (299)
T cd02893 187 ILGKP--DKLDLESLLRWLVARQMRFEGGFQGR------------TNKLVDGCYSFWVGGSLPILEAILNAEKKFDDSAE 252 (299)
T ss_pred HcCCc--cccCHHHHHHHHHhhcCCCCCCcCCC------------CCCCCccHHHHHHHHHHHHHHHHhccccccccccc
Confidence 88864 334678999999999998 8998653 234567788889888887765421
Q ss_pred CCcHHHHHHHHHHHh-cCcCCCCCCCCcccceeccccccccCCchhhHHHHHHH
Q 010631 442 TDPTPLHRAARYLIN-SQMENGDYPQEEIMGVFNRNCMISYSAYRNIFPIWALG 494 (505)
Q Consensus 442 ~d~~~i~rgv~~L~~-~Q~~~G~w~~~~~~g~f~~~~~~~y~~y~~~fpl~AL~ 494 (505)
......++..+||+. +|..+|+|...+ +..| ..|-++|.|.+|+
T Consensus 253 ~~~~~~~~l~~~il~~~q~~~GGf~~~p--~~~~-------D~yHT~~~l~~Ls 297 (299)
T cd02893 253 GTLFDQEALQEYILLCCQSEEGGLRDKP--GKPR-------DFYHTCYALSGLS 297 (299)
T ss_pred ccccCHHHHHHHHHHhcCCCCCCcCCCC--CCCC-------CchhHHHHHHHHh
Confidence 011236778999995 567789997542 2223 2466788998887
No 28
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=99.74 E-value=3.8e-16 Score=158.04 Aligned_cols=292 Identities=15% Similarity=0.154 Sum_probs=187.9
Q ss_pred HHHHhhhhhceeeeCCCceeecCCCCChhHHHHHHHHHHhcCCCcc-hHHHHHHHHHHHHhcccCCC-CCCCccccccCC
Q 010631 135 KLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEE-YGATLKKAHKYIKDSQVLED-CPGNLDFWYRHI 212 (505)
Q Consensus 135 ~~~~~~l~~~~~~~~~g~~~q~~~~s~vwDTa~a~~AL~~ag~~~~-~~~~l~~A~~~L~~~Q~~~~-~~Gd~~~~~~~~ 212 (505)
+||++.+.+.+-.-|.. ++....+.+|-|=+++.+|.--|.... ....-++.++||.++|+.++ +.|.
T Consensus 2 ~~H~~y~~~~l~~lp~~--~~~~d~~r~~~~yf~l~~L~lL~~~~~~~~~~r~~~i~~i~~~q~~~~~~~Gg-------- 71 (307)
T cd02895 2 KKHVKFFQRCLQLLPSS--YQSLDTNRLTIAFFALSGLDLLGALDSILVEEKDDIIEWIYSLQVLSNLPRGG-------- 71 (307)
T ss_pred hHHHHHHHHHhhhCCch--hhhhhhhhHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhcccCCCCCC--------
Confidence 46777776664322332 444456788999999988887664320 13345778999999994211 1133
Q ss_pred CCCCCCCccc--------CCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccc
Q 010631 213 SKGAWPFSTA--------DHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRS 284 (505)
Q Consensus 213 ~~GgW~f~~~--------~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~ 284 (505)
++-... ..+-+++-.|=.|+.+|..+.. .......++.++||.++|++||||+....
T Consensus 72 ----F~~~~~~~~~~~~~~~~~~~l~~ty~Al~~L~lL~~--------~~~~idr~~i~~~l~~~q~~dGgF~~~~~--- 136 (307)
T cd02895 72 ----FRGSSTLGLPGTASKYDTGNLAMTYFALLSLLILGD--------DLSRVDRKAILNFLSKLQLPDGSFGSVLD--- 136 (307)
T ss_pred ----CCCCCCCccccccccCCcccHHHHHHHHHHHHHhCC--------chhhhhHHHHHHHHHHhCCCCCCccCCcC---
Confidence 332211 1123556667777777665532 11122357789999999999999974320
Q ss_pred cchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCC-CCccc
Q 010631 285 YPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWG-VCFTY 363 (505)
Q Consensus 285 ~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg-~~~~y 363 (505)
..++ .+....|-.+|..|..++...+ +. ...++.++||.+.|.+||+|.+.-+ ....-
T Consensus 137 ----------~~~~-----e~d~r~ty~Av~~l~lL~~~~~----~~--~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g 195 (307)
T cd02895 137 ----------SEGG-----ENDMRFCYCAVAICYMLDDWSE----ED--IDKEKLIDYIKSSQSYDGGFGQGPGLESHGG 195 (307)
T ss_pred ----------CcCC-----CccHHHHHHHHHHHHHhCCCcc----cc--ccHHHHHHHHHHccCCCCCccCCCCCCcccc
Confidence 0011 1223345556666666554211 01 2368999999999999999976432 22223
Q ss_pred hHHHHHHHHHHcCCCCC-CcHHHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCC
Q 010631 364 GTWFGVKGLVAAGMNYS-NSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAET 442 (505)
Q Consensus 364 ~T~~al~aL~~~G~~~~-~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~ 442 (505)
.|.+|+.+|...|.... ....+++.++||+++|+.+||++.. ++..+++..|.|++-+|...+...
T Consensus 196 ~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr------------~~k~~D~cysfw~~a~L~iL~~~~- 262 (307)
T cd02895 196 STFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGR------------PNKPADTCYSFWVGASLKLLDAFQ- 262 (307)
T ss_pred HHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCC------------CCCCCccchhhHHHHHHHHcCccc-
Confidence 37888989988876410 2456788999999999999998754 244678889999999998887642
Q ss_pred CcHHHHHHHHHHHhcCc-CCCCCCCCcccceeccccccccCCchhhHHHHHHHH
Q 010631 443 DPTPLHRAARYLINSQM-ENGDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGE 495 (505)
Q Consensus 443 d~~~i~rgv~~L~~~Q~-~~G~w~~~~~~g~f~~~~~~~y~~y~~~fpl~AL~~ 495 (505)
...+++..+||+++|+ .+|+|...+- ..| +.|-++|.|-||+.
T Consensus 263 -~id~~~l~~~l~~~q~~~~GGf~~~p~--~~~-------D~~ht~~~la~Lsl 306 (307)
T cd02895 263 -LIDFEKNRNYLLSTQQSLVGGFAKNPD--SHP-------DPLHSYLGLAALSL 306 (307)
T ss_pred -ccCHHHHHHHHHHHcCCCCCCcCCCCC--CCC-------ChhHHHHHHHHHHh
Confidence 2237889999998875 5899976542 233 34557788888873
No 29
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.74 E-value=1.6e-16 Score=160.51 Aligned_cols=226 Identities=15% Similarity=0.085 Sum_probs=160.9
Q ss_pred HHHHHhhhhhceeeeCCCce-eecCCCCChhHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHhcccCCCCCCCccccccC
Q 010631 134 FKLHIPRINDYLWIAEDGMK-VQGYNGSQLWDTAFAVQAIISTNLV-EEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRH 211 (505)
Q Consensus 134 ~~~~~~~l~~~~~~~~~g~~-~q~~~~s~vwDTa~a~~AL~~ag~~-~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~ 211 (505)
++++++++..| +..||.+ .-+.+.+.+|.||+++.+|.+++.. .-..+.|+++++||++.|..+ |+|....+-
T Consensus 54 i~~g~~r~l~~--q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~d---G~f~e~~~~ 128 (297)
T cd02896 54 IRQGYQRQLSY--RKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPD---GSFQEPSPV 128 (297)
T ss_pred HHHHHHHHHhc--cCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCC---CeeCCCCCc
Confidence 67888888877 5567733 1133378999999999999987531 112578999999999999876 888764332
Q ss_pred CC---CCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchh
Q 010631 212 IS---KGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWL 288 (505)
Q Consensus 212 ~~---~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l 288 (505)
.. .||+.. ..++++.||+|+.+|.......+.. .......+.+|++||.++|.+-
T Consensus 129 ~~~~m~gg~~~-----~~~~~~lTA~vl~aL~~~~~~~~~~--~~~~~~~i~rA~~yL~~~~~~~--------------- 186 (297)
T cd02896 129 IHREMTGGVEG-----SEGDVSLTAFVLIALQEARSICPPE--VQNLDQSIRKAISYLENQLPNL--------------- 186 (297)
T ss_pred cChhccCCccc-----cCCCccchHHHHHHHHhhhcccccc--chhhHHHHHHHHHHHHHhcccC---------------
Confidence 21 234421 1357899999999998764322100 0113568999999999987530
Q ss_pred cccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCC----------
Q 010631 289 EVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWG---------- 358 (505)
Q Consensus 289 ~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg---------- 358 (505)
.+++.++.+..||+..+. +...++.++|.+.|..||+|...|.
T Consensus 187 ----------------~~~Y~~Al~ayALal~~~-----------~~~~~a~~~L~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (297)
T cd02896 187 ----------------QRPYALAITAYALALADS-----------PLSHAANRKLLSLAKRDGNGWYWWTIDSPYWPVPG 239 (297)
T ss_pred ----------------CChHHHHHHHHHHHHcCC-----------hhhHHHHHHHHHHhhhCCCcceeccCcCccCCCCC
Confidence 113457777788877653 2578999999999999999864321
Q ss_pred CC--ccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHH
Q 010631 359 VC--FTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALID 436 (505)
Q Consensus 359 ~~--~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ 436 (505)
.. .+-.|++||.+|...|. .+.+.++++||.++|+.+|||+.+ -.|..||.||..
T Consensus 240 ~~~~~vE~TAYALLall~~~~----~~~a~~iv~WL~~qr~~~Ggf~sT-------------------QdTvval~AL~~ 296 (297)
T cd02896 240 PSAITVETTAYALLALLKLGD----IEYANPIARWLTEQRNYGGGFGST-------------------QDTVVALQALAE 296 (297)
T ss_pred CchhhhHHHHHHHHHHHhcCC----chhHHHHHHHHHhcCCCCCCeehH-------------------HHHHHHHHHHhc
Confidence 11 24469999999998873 347889999999999999999532 369999999974
No 30
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=99.73 E-value=2.2e-16 Score=158.66 Aligned_cols=234 Identities=20% Similarity=0.168 Sum_probs=157.2
Q ss_pred HHHHHHhhhhhceeeeCCC-ceeecCCCCChhHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccccccC
Q 010631 133 AFKLHIPRINDYLWIAEDG-MKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRH 211 (505)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~g-~~~q~~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~ 211 (505)
..++++++|.+.+. .++| ........+.+.-|-.++.+|...+.-+.+++.++++++||.++|..+
T Consensus 50 ~~~~~i~fl~~~q~-~~~GgF~~~~~~~~~~~~t~~a~~~L~ll~~~~~i~~~~~~~~~~i~~~q~~d------------ 116 (287)
T cd02894 50 NREEIIEFVKSCQD-NEDGGFGGSPGHDPHILSTLSAIQILALYDLLNKIDENKEKIAKFIKGLQNED------------ 116 (287)
T ss_pred hHHHHHHHHHHHhc-CCCCCCCCCCCCcchHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHcCCC------------
Confidence 35788888777531 3344 322222245566677777777654322233456899999999999875
Q ss_pred CCCCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhccc
Q 010631 212 ISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVL 291 (505)
Q Consensus 212 ~~~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~ 291 (505)
|||..... +-+|+--|-.|+.+|..+... +...++++++||+++|++||||+.-. +
T Consensus 117 ---Ggf~~~~~--~e~d~~~ty~a~~~l~ll~~~---------~~i~~~~~~~~l~~~q~~dGGF~~~~-~--------- 172 (287)
T cd02894 117 ---GSFSGDKW--GEVDTRFSYCAVLCLTLLGKL---------DLIDVDKAVDYLLSCYNFDGGFGCRP-G--------- 172 (287)
T ss_pred ---CCeecCCC--CCchHHHHHHHHHHHHHhCCc---------chhhHHHHHHHHHHcCCCCCCcCCCC-C---------
Confidence 77765432 112333355555555444221 22347999999999999999996321 0
Q ss_pred CcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCC-CCccchHHHHHH
Q 010631 292 NPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWG-VCFTYGTWFGVK 370 (505)
Q Consensus 292 ~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg-~~~~y~T~~al~ 370 (505)
..+++--|..++.+|..++.... ..++++++||.++|.++|++.++-+ ...++-|++++.
T Consensus 173 -----------~es~~~~t~cavasL~llg~~~~--------~~~~~~~~~L~~~q~~~GGf~gr~~k~~D~~ysf~~~a 233 (287)
T cd02894 173 -----------AESHAGQIFCCVGALAILGSLDL--------IDRDRLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLS 233 (287)
T ss_pred -----------CCCchhHHHHHHHHHHHcCcccc--------cCHHHHHHHHHHhCCCCCCcCCCCCCCCchhHhhHHHH
Confidence 11334557888888888875421 2378999999999999999987654 345556889999
Q ss_pred HHHHcCCCCCCcHHHHHHHHHHHhcc-CCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHH
Q 010631 371 GLVAAGMNYSNSSSIRKACEFLLSKQ-RPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALID 436 (505)
Q Consensus 371 aL~~~G~~~~~~~~i~ra~~~L~~~Q-~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ 436 (505)
+|...|.. . -...++..+||+++| .++|||... ++..++++.|.|+|.+|..
T Consensus 234 ~l~~l~~~-~-~~~~~~l~~~l~~~q~~~~GGf~~~------------p~~~~D~~ht~~~l~~Lsl 286 (287)
T cd02894 234 SLKIIGRL-H-WINKNKLKNFILACQDEEDGGFADR------------PGNMVDVFHTFFGLAGLSL 286 (287)
T ss_pred HHHHhccc-c-ccCHHHHHHHHHHhcCCCCCCcCCC------------CCCCCChhHHHHHHHHHHh
Confidence 99888764 2 123778999999999 479999753 2456789999999999863
No 31
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.70 E-value=1.4e-15 Score=153.21 Aligned_cols=224 Identities=16% Similarity=0.103 Sum_probs=149.0
Q ss_pred HHHHHhhhhhceeeeCCCcee-ecC--CCCChhHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHhcccCCCCCCCccccc
Q 010631 134 FKLHIPRINDYLWIAEDGMKV-QGY--NGSQLWDTAFAVQAIISTNL-VEEYGATLKKAHKYIKDSQVLEDCPGNLDFWY 209 (505)
Q Consensus 134 ~~~~~~~l~~~~~~~~~g~~~-q~~--~~s~vwDTa~a~~AL~~ag~-~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~ 209 (505)
++.+++++..+ +..||.+- -+. ..+.+|.||+++.+|.+++. ....+..|++|++||+++|..+ |.|....
T Consensus 51 l~~g~~~~~~~--q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~d---G~f~~~~ 125 (292)
T cd02897 51 LRTGYQRQLTY--KHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSN---GCFREVG 125 (292)
T ss_pred HHHHHHHHHhc--cCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCC---CCCCCCC
Confidence 55566666666 56777442 111 25789999999999999752 1223679999999999999876 4443111
Q ss_pred cCCCCCCCCCccc-CCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchh
Q 010631 210 RHISKGAWPFSTA-DHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWL 288 (505)
Q Consensus 210 ~~~~~GgW~f~~~-~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l 288 (505)
+ +-.... ...-+.++.||.++.+|..... ....+.+.+|++||.+.+.+
T Consensus 126 ~------~~~~~~~~~~~~~~~~TA~vl~aL~~~g~--------~~~~~~i~~a~~yL~~~~~~---------------- 175 (292)
T cd02897 126 R------VFHKAMQGGVDDEVALTAYVLIALLEAGL--------PSERPVVEKALSCLEAALDS---------------- 175 (292)
T ss_pred c------ccChhhcCCCCCCcchHHHHHHHHHhcCC--------ccccHHHHHHHHHHHHhccc----------------
Confidence 0 000000 0011457899999999975432 22467899999999997753
Q ss_pred cccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCccc-----C------
Q 010631 289 EVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGS-----W------ 357 (505)
Q Consensus 289 ~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~-----w------ 357 (505)
..++..++.+..||...+. +. ...+.+.+.++...+..+|.|... +
T Consensus 176 ---------------~~~~y~~al~a~AL~~~~~--~~------~~~~~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~~ 232 (292)
T cd02897 176 ---------------ISDPYTLALAAYALTLAGS--EK------RPEALKKLDELAISEDGTKHWSRPPPSEEGPSYYWQ 232 (292)
T ss_pred ---------------CCCHHHHHHHHHHHHHcCC--cc------HHHHHHHHHHHHhccCCCCCCCcCCCcccccccCCC
Confidence 0124568888889988762 21 123444555666666777888631 1
Q ss_pred C-CCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHH
Q 010631 358 G-VCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALID 436 (505)
Q Consensus 358 g-~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ 436 (505)
+ ...+-.|+++|++|...+. ...+.+.++++||.+.|++||||+.+ -.|++||.||..
T Consensus 233 ~~~~~ve~TAyaLlall~~~~--~~~~~~~~~v~WL~~~q~~~Ggf~sT-------------------Qdt~~al~AL~~ 291 (292)
T cd02897 233 APSAEVEMTAYALLALLSAGG--EDLAEALPIVKWLAKQRNSLGGFSST-------------------QDTVVALQALAK 291 (292)
T ss_pred CCcchHHHHHHHHHHHHHcCC--ccHhHHHHHHHHHHHcCCCCCCcccH-------------------HHHHHHHHHHHc
Confidence 1 1123349999999998874 34578889999999999999999642 369999999975
No 32
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.70 E-value=2.5e-17 Score=141.73 Aligned_cols=110 Identities=31% Similarity=0.498 Sum_probs=86.9
Q ss_pred HHHHHHhccccCCCcccCCCCccchHHHHHHHHHHcCCCCCCcHHHHHH--HHHHHhccCCCCCCCcCcccccccccccC
Q 010631 340 VKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKA--CEFLLSKQRPSGGWGESYLSCQKKVYSNL 417 (505)
Q Consensus 340 v~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra--~~~L~~~Q~~DGgWge~~~s~~~~~y~~~ 417 (505)
|+||++.|++||+|...++.+.++.|++++.+|..+|.. .+ .+++ ++||+++|++||||+....
T Consensus 1 v~~L~~~Q~~dGgw~~~~~~~~~~~T~~al~aL~~~g~~-~~---~~~~~~~~~L~~~q~~dGg~~~~~~---------- 66 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGFGGPSDVWDTAFALLALAALGEE-PD---RDRAAAVEWLLSQQNPDGGWGSNPD---------- 66 (113)
T ss_dssp HHHHHHHB-TTSSBBSSTS-BEHHHHHHHHHHHHHHTSH-HC---HHHHHHHHHHHHHB-TTSGBBSSTT----------
T ss_pred CHhhHHHcCCCCCCcCCCCCCCHHHHHHHHHHHHHhCCc-cc---HHHHHHHHHHHHhCCCCCCccCCCC----------
Confidence 689999999999998766677888999999999999986 22 5555 9999999999999987421
Q ss_pred CCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCCCC
Q 010631 418 EGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYP 465 (505)
Q Consensus 418 ~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~w~ 465 (505)
+..+++..|++++.+|...+.... .+.++|+++||+++|++||+|.
T Consensus 67 -~~~~~~~~t~~~l~~l~~~~~~~~-~~~~~~a~~~l~~~Q~~dGg~~ 112 (113)
T PF13249_consen 67 -GGPPDVYTTYVALAALELLGRPDD-EEAVRKAVDWLLSCQNPDGGWG 112 (113)
T ss_dssp -TT-BSHHHHHHHHHHHHHHT-GGC-HTTHCCHHHHHHHTB-TTSSB-
T ss_pred -CCCccHHHHHHHHHHHHHcCCCcc-cHHHHHHHHHHHHhcCCCCCCC
Confidence 235678899999999998887642 2359999999999999999996
No 33
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.69 E-value=1.9e-17 Score=142.46 Aligned_cols=108 Identities=32% Similarity=0.487 Sum_probs=84.7
Q ss_pred HHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHH--HH
Q 010631 263 VNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKR--AV 340 (505)
Q Consensus 263 v~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~r--av 340 (505)
|+||+++|++||||+.+ -.++.+..|+.+|.+|..++...+ .++ |+
T Consensus 1 v~~L~~~Q~~dGgw~~~----------------------~~~~~~~~T~~al~aL~~~g~~~~----------~~~~~~~ 48 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF----------------------GGPSDVWDTAFALLALAALGEEPD----------RDRAAAV 48 (113)
T ss_dssp HHHHHHHB-TTSSBBSS----------------------TS-BEHHHHHHHHHHHHHHTSHHC----------HHHHHHH
T ss_pred CHhhHHHcCCCCCCcCC----------------------CCCCCHHHHHHHHHHHHHhCCccc----------HHHHHHH
Confidence 68999999999999853 123567899999999999876421 334 59
Q ss_pred HHHHHhccccCCCcccC--CCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCC
Q 010631 341 KFIEKIQELDGSWYGSW--GVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWG 403 (505)
Q Consensus 341 ~~L~~~Q~~DG~W~g~w--g~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWg 403 (505)
+||++.|++||+|.... ..+.++.|+.++.+|...+.. ...+.++|+++||+++|++||||+
T Consensus 49 ~~L~~~q~~dGg~~~~~~~~~~~~~~t~~~l~~l~~~~~~-~~~~~~~~a~~~l~~~Q~~dGg~~ 112 (113)
T PF13249_consen 49 EWLLSQQNPDGGWGSNPDGGPPDVYTTYVALAALELLGRP-DDEEAVRKAVDWLLSCQNPDGGWG 112 (113)
T ss_dssp HHHHHHB-TTSGBBSSTTTT-BSHHHHHHHHHHHHHHT-G-GCHTTHCCHHHHHHHTB-TTSSB-
T ss_pred HHHHHhCCCCCCccCCCCCCCccHHHHHHHHHHHHHcCCC-cccHHHHHHHHHHHHhcCCCCCCC
Confidence 99999999999998765 345788899999999999887 345789999999999999999996
No 34
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.67 E-value=1.4e-14 Score=144.87 Aligned_cols=237 Identities=19% Similarity=0.170 Sum_probs=166.9
Q ss_pred chHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHH
Q 010631 180 EYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRL 259 (505)
Q Consensus 180 ~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i 259 (505)
+....|.+++++|.+.|..| |||++...+. .+++..|+.++.+|..+... + .++++.+
T Consensus 46 ~~~~~i~~~~~~l~~~Q~~d---------------Ggf~~w~~~~-~~~~~~Ta~~~~~L~~a~~~-----~-~v~~~~i 103 (282)
T cd02891 46 KALEYIRKGYQRLLTYQRSD---------------GSFSAWGNSD-SGSTWLTAYVVKFLSQARKY-----I-DVDENVL 103 (282)
T ss_pred HHHHHHHHHHHHHHhhcCCC---------------CCccccCCCC-CCchHHHHHHHHHHHHHHHc-----C-CCCHHHH
Confidence 45788999999999999876 7777765442 46889999999999877542 2 4567899
Q ss_pred HHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHH
Q 010631 260 YDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRA 339 (505)
Q Consensus 260 ~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra 339 (505)
.+|++||.+.|++||+|..+........ ++ .+.+..+.|+.++.+|...+... ...+.++
T Consensus 104 ~ra~~~L~~~q~~~g~~~~~~~~~~~~~---------~~---~~~~~~~~tA~al~~L~~~g~~~--------~~~~~~a 163 (282)
T cd02891 104 ARALGWLVPQQKEDGSFRELGPVIHREM---------KG---GVDDSVSLTAYVLIALAEAGKAC--------DASIEKA 163 (282)
T ss_pred HHHHHHHHhccCCCCCcCCCCCccCHhh---------cC---CcCCCcchHHHHHHHHHHhcccc--------hHHHHHH
Confidence 9999999999999999975432211100 01 12344678999999999877531 2578999
Q ss_pred HHHHHHhccccCCCcccCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccccccccccCCC
Q 010631 340 VKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEG 419 (505)
Q Consensus 340 v~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~ 419 (505)
++||.++... ....|+.+....+|...|.. +...+.++-|.......+++... ....+.. -+
T Consensus 164 ~~~L~~~~~~---------~~~~~~~a~la~al~~~g~~----~~~~~~l~~l~~~~~~~~~~~~~----~~~~~~~-~~ 225 (282)
T cd02891 164 LAYLETQLDG---------LLDPYALAILAYALALAGDS----TRADEALKKLLEAAREKGGTAHW----SLSWPGD-YG 225 (282)
T ss_pred HHHHHHhccc---------CCChHHHHHHHHHHHHcCcc----HHHHHHHHHHHHHhhhcCCcccc----cCCCCCC-CC
Confidence 9999987753 23578888888888887752 44556666666655444443111 0001110 02
Q ss_pred CCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCcccceeccccccccCCchhhHHHHHHHHH
Q 010631 420 DRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGEY 496 (505)
Q Consensus 420 ~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~w~~~~~~g~f~~~~~~~y~~y~~~fpl~AL~~y 496 (505)
.......|+++|++....+. +....+.++||+++++.+|.|..++. +++.|.||+.|
T Consensus 226 s~~~~~a~a~all~~~~~~~----~~~~~~~~~~L~~~~~~~~~~~sTq~----------------t~~al~AL~~y 282 (282)
T cd02891 226 SSLRVEATAYALLALLKLGD----LEEAGPIAKWLAQQRNSGGGFLSTQD----------------TVVALQALAAY 282 (282)
T ss_pred chhhHHHHHHHHHHHHhcCC----hhhHHHHHHHHHHcCCCCCCcccHHH----------------HHHHHHHHHhC
Confidence 23456788999999876542 33478899999998889999999875 57999999876
No 35
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.66 E-value=6.8e-16 Score=163.34 Aligned_cols=214 Identities=21% Similarity=0.287 Sum_probs=157.0
Q ss_pred CCChhH-HHHHHHHHHhcCCCc-------chHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCC--------CCccc
Q 010631 159 GSQLWD-TAFAVQAIISTNLVE-------EYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAW--------PFSTA 222 (505)
Q Consensus 159 ~s~vwD-Ta~a~~AL~~ag~~~-------~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW--------~f~~~ 222 (505)
+.+|-| ||-++.+..--++.+ -..+.+-.|++.|+..|+.+ |......+ .+.+-| .|.+.
T Consensus 480 gw~vsDctaEal~~~lll~~~~~~~vg~~~~~erL~dav~~Ll~lq~~~---Gg~~~~e~-~r~~~wLE~lnp~E~f~~~ 555 (760)
T KOG0497|consen 480 GWPVSDCTAEALKCCLLLSSMPSEIVGEKIDVERLYDAVDVLLYLQSEN---GGFAAYEP-ARGYEWLELLNPAEVFGDI 555 (760)
T ss_pred ceeeccccHHHHHHHHHhcCCChhhccCCCCHHHHHHHHHHHHhhhhcc---Cccccccc-cchHHHHHhcCchhcccce
Confidence 455555 666654433222211 12578999999999999765 55433332 112223 12233
Q ss_pred CCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCccc
Q 010631 223 DHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVI 302 (505)
Q Consensus 223 ~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~ 302 (505)
...|+.+.||..++.||....+..+....+. ....+.+|+.||.++|-+||+| +|.+.+
T Consensus 556 ~ve~~yvEcT~s~I~aL~~F~k~~p~~r~~E-i~~~i~~av~~ie~~Q~~DGSW--------------------yGsWgv 614 (760)
T KOG0497|consen 556 MVEYEYVECTSSAIQALVYFHKLFPGHRKKE-IEKSIEKAVEFIEKLQLPDGSW--------------------YGSWGV 614 (760)
T ss_pred eeeecccccHHHHHHHHHhhcccCccHHHHH-HHHHHHHHHHHHHHcCCCCCcc--------------------cchhhH
Confidence 3456789999999999988776554332222 3678999999999999999999 566777
Q ss_pred ccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCC-------------ccchHHHHH
Q 010631 303 DYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVC-------------FTYGTWFGV 369 (505)
Q Consensus 303 d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~-------------~~y~T~~al 369 (505)
.. ...|-+++.+|...++.+.+ -.+++||++||.+.|++||+|+++.-.| .+-+|++|+
T Consensus 615 CF--tY~t~Fa~~gl~aaGkty~n------c~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAl 686 (760)
T KOG0497|consen 615 CF--TYGTWFALRGLAAAGKTYEN------CEAIRKACDFLLSKQNPDGGWGESYLSCPEKRYIPLEGNKSNVVQTAWAL 686 (760)
T ss_pred HH--HHHHHHhcchhhhcchhhhc------cHHHHHHHHHHHhhhcccCCCccccccCccccccccccccccchhHHHHH
Confidence 66 56899999999999987654 3689999999999999999999765433 245699999
Q ss_pred HHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcC
Q 010631 370 KGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGES 405 (505)
Q Consensus 370 ~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~ 405 (505)
++|..+|....+.-.+.||++.|+..|.++|.|+..
T Consensus 687 m~Li~~~q~~rd~~P~hr~ak~linsQ~~nGdfpqq 722 (760)
T KOG0497|consen 687 MALIMAGQAERDPLPLHRAAKVLINSQLENGDFPQQ 722 (760)
T ss_pred HHHHhcCCcccccchHHHHHHHHHhcccccCCcchh
Confidence 999999987334447899999999999999999753
No 36
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.66 E-value=3.8e-17 Score=140.01 Aligned_cols=108 Identities=37% Similarity=0.544 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhccccCCCcccCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccccccccc
Q 010631 336 IKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYS 415 (505)
Q Consensus 336 i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~ 415 (505)
|+++++||++.|++||||.+.|+.+ .+.|.+++.+|...+.. ...+.|+|+++||+++|++||||+..
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~~~~~-~~~t~~~~~al~~~~~~-~~~~ai~ka~~~l~~~Q~~dG~w~~~---------- 68 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYNWGSD-VFVTAALILALAAAGDA-AVDEAIKKAIDWLLSHQNPDGGWGYS---------- 68 (109)
T ss_dssp -----------------------------------------TS--SSBSSHHHHHHHHH---TTS--S-T----------
T ss_pred Ccccccccccccccccccccccccc-ccccccccccccccCCC-CcHHHHHHHHHHHHHhcCCCCCCCCc----------
Confidence 5789999999999999999887744 67788999999998876 77889999999999999999999864
Q ss_pred cCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcC
Q 010631 416 NLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQME 460 (505)
Q Consensus 416 ~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~ 460 (505)
..+..+.|+.++.+|..++....+ +.++|+++||+++|..
T Consensus 69 ----~~~~~~~t~~~~~~l~~~~~~~~~-~~~~r~~~wi~~~~~~ 108 (109)
T PF13243_consen 69 ----GGEYVSMTAAAIAALALAGVYPDD-EAVERGLEWILSHQLD 108 (109)
T ss_dssp ----S--HHHHHHHHHHHHHHHHTT--H-HHHHHHHHHHHHH---
T ss_pred ----CCCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCC
Confidence 123355666666666655554333 4599999999998753
No 37
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=99.65 E-value=1.8e-14 Score=145.31 Aligned_cols=246 Identities=16% Similarity=0.113 Sum_probs=156.7
Q ss_pred hhhhheecccCCCCHHHHHHHhhhhhceeeeCCCce-eecCCCCChhHHHHHHHHHHhcCCCcch-HHHHHHHHHHHHhc
Q 010631 118 VLNMLCCWVEDPNSEAFKLHIPRINDYLWIAEDGMK-VQGYNGSQLWDTAFAVQAIISTNLVEEY-GATLKKAHKYIKDS 195 (505)
Q Consensus 118 ~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~-~q~~~~s~vwDTa~a~~AL~~ag~~~~~-~~~l~~A~~~L~~~ 195 (505)
+++.|.+.+...+....++.+++|... +.++|.. ......+.+.-|=.|+.+|...|-.+.. .-..+++++||.++
T Consensus 33 ~l~~l~lL~~~~~~~~~~~~i~~i~~~--q~~~GgF~~~~~~~~h~~~Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~ 110 (299)
T cd02893 33 ILHSLELLGEELDQSYADDVISFLRRC--QNPSGGFGGGPGQLPHLATTYAAVNALAIIGTEEAYDVIDREALYKFLLSL 110 (299)
T ss_pred HHHHHHHhCCcccHHHHHHHHHHHHHh--cCCCCCCCCCCCCCccHHHHHHHHHHHHHhCCchhhhHhhHHHHHHHHHHh
Confidence 444444444333333355777777765 3456532 2222357788888888888877643211 12245699999999
Q ss_pred ccCCCCCCCccccccCCCCCCCCCcccCCCCCCchh----hHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhccc
Q 010631 196 QVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDC----TSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQN 271 (505)
Q Consensus 196 Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~----Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn 271 (505)
|..+ |||..... .++|. +|.++..|+ .. .+.+.++++++||+++|+
T Consensus 111 q~~d---------------Ggf~~~~~----~e~D~r~tycava~~~lL--~~---------~~~~~~~~~~~~l~~cQ~ 160 (299)
T cd02893 111 KQPD---------------GSFRMHVG----GEVDVRGTYCAISVASLL--NI---------LTDELFEGVAEYILSCQT 160 (299)
T ss_pred cCCC---------------CCeeCCCC----CCchHhHHHHHHHHHHHh--CC---------CchhhHHHHHHHHHHcCC
Confidence 9876 67665522 23343 233333332 11 124568899999999999
Q ss_pred CCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccc-c
Q 010631 272 ADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQEL-D 350 (505)
Q Consensus 272 ~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~-D 350 (505)
.||||+.-. . ..++..-|..++.+|..++.... ..+++.++||.++|.+ +
T Consensus 161 ~dGGF~~~p-~--------------------~e~h~~yTfcavasL~llg~~~~--------~d~~~l~~wl~~~q~~~~ 211 (299)
T cd02893 161 YEGGFGGVP-G--------------------NEAHGGYTFCALAALAILGKPDK--------LDLESLLRWLVARQMRFE 211 (299)
T ss_pred CCCCcCCCC-C--------------------CCCCccHHHHHHHHHHHcCCccc--------cCHHHHHHHHHhhcCCCC
Confidence 999997411 0 11334568888888888875321 1368899999999988 8
Q ss_pred CCCcccCC-CCccchHHHHHHHHHHcCCCCC-----------CcHHHHHHHHHHHh-ccCCCCCCCcCcccccccccccC
Q 010631 351 GSWYGSWG-VCFTYGTWFGVKGLVAAGMNYS-----------NSSSIRKACEFLLS-KQRPSGGWGESYLSCQKKVYSNL 417 (505)
Q Consensus 351 G~W~g~wg-~~~~y~T~~al~aL~~~G~~~~-----------~~~~i~ra~~~L~~-~Q~~DGgWge~~~s~~~~~y~~~ 417 (505)
||+.|+-+ ...++-|+|++.+|...+..+. .-...++..+||+. .|+.+|||...
T Consensus 212 GGf~grp~k~~D~cys~w~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~q~~~GGf~~~------------ 279 (299)
T cd02893 212 GGFQGRTNKLVDGCYSFWVGGSLPILEAILNAEKKFDDSAEGTLFDQEALQEYILLCCQSEEGGLRDK------------ 279 (299)
T ss_pred CCcCCCCCCCCccHHHHHHHHHHHHHHHHhcccccccccccccccCHHHHHHHHHHhcCCCCCCcCCC------------
Confidence 99988753 1233336777777766654211 12345678899995 45678999753
Q ss_pred CCCCCchhHHHHHHHHHHH
Q 010631 418 EGDRSHVVNTAWAMLALID 436 (505)
Q Consensus 418 ~~~~s~~~~Ta~ALlaL~~ 436 (505)
++..+++++|+++|.+|..
T Consensus 280 p~~~~D~yHT~~~l~~Lsl 298 (299)
T cd02893 280 PGKPRDFYHTCYALSGLSI 298 (299)
T ss_pred CCCCCCchhHHHHHHHHhc
Confidence 2456889999999999964
No 38
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=99.60 E-value=1.2e-13 Score=139.96 Aligned_cols=256 Identities=17% Similarity=0.076 Sum_probs=158.8
Q ss_pred hhhhheecccCC--CCHHHHHHHhhhhhcee--eeCCCceeecC-----------CCCChhHHHHHHHHHHhcCCCcchH
Q 010631 118 VLNMLCCWVEDP--NSEAFKLHIPRINDYLW--IAEDGMKVQGY-----------NGSQLWDTAFAVQAIISTNLVEEYG 182 (505)
Q Consensus 118 ~l~~l~~~~~~~--~~~~~~~~~~~l~~~~~--~~~~g~~~q~~-----------~~s~vwDTa~a~~AL~~ag~~~~~~ 182 (505)
+|+.|.+.+.+. ....-++.+++|..... ..++|...... ..++++-|=+|+.+|.-.|-..+ .
T Consensus 33 ~l~~L~lL~~~~~~~~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~~~~~~~~~~~~~~l~~ty~Al~~L~lL~~~~~-~ 111 (307)
T cd02895 33 ALSGLDLLGALDSILVEEKDDIIEWIYSLQVLSNLPRGGFRGSSTLGLPGTASKYDTGNLAMTYFALLSLLILGDDLS-R 111 (307)
T ss_pred HHHHHHHhCCCccccHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccccccccCCcccHHHHHHHHHHHHHhCCchh-h
Confidence 455555544432 12223455667766521 04555322111 24778888888888876653211 1
Q ss_pred HHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCccc-CCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHH
Q 010631 183 ATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTA-DHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYD 261 (505)
Q Consensus 183 ~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~-~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~ 261 (505)
-..++.++||.++|..+ |||+-... ..+-+|+--|=.|+.++..+.... . .....++
T Consensus 112 idr~~i~~~l~~~q~~d---------------GgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~------~-~~~d~~~ 169 (307)
T cd02895 112 VDRKAILNFLSKLQLPD---------------GSFGSVLDSEGGENDMRFCYCAVAICYMLDDWS------E-EDIDKEK 169 (307)
T ss_pred hhHHHHHHHHHHhCCCC---------------CCccCCcCCcCCCccHHHHHHHHHHHHHhCCCc------c-ccccHHH
Confidence 23577889999999875 44432220 112234444444444444332211 0 1124678
Q ss_pred HHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHH
Q 010631 262 SVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVK 341 (505)
Q Consensus 262 Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~ 341 (505)
.++||+++|+.||||+... . +.++..-|..++.+|..++.... . . ...+++.++
T Consensus 170 li~~l~s~Q~~dGGF~~~~----------------~-----~Esh~g~Tyca~asL~lL~~~~~-~--~--~~~~~~l~~ 223 (307)
T cd02895 170 LIDYIKSSQSYDGGFGQGP----------------G-----LESHGGSTFCAIASLSLLGKLEE-L--S--EKFLERLKR 223 (307)
T ss_pred HHHHHHHccCCCCCccCCC----------------C-----CCccccHHHHHHHHHHHcCCccc-c--c--cccHHHHHH
Confidence 9999999999999996321 1 11234457777888887765320 0 0 124788999
Q ss_pred HHHHhccccCCCcccCC-CCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccC-CCCCCCcCcccccccccccCCC
Q 010631 342 FIEKIQELDGSWYGSWG-VCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQR-PSGGWGESYLSCQKKVYSNLEG 419 (505)
Q Consensus 342 ~L~~~Q~~DG~W~g~wg-~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~-~DGgWge~~~s~~~~~y~~~~~ 419 (505)
||.++|.++|||.++-+ ...++-|+|++.+|...|.. ..-.+++..+||+++|+ .+||+... ++
T Consensus 224 wL~~rQ~~~GGF~gr~~k~~D~cysfw~~a~L~iL~~~--~~id~~~l~~~l~~~q~~~~GGf~~~------------p~ 289 (307)
T cd02895 224 WLVHRQVSGTGFNGRPNKPADTCYSFWVGASLKLLDAF--QLIDFEKNRNYLLSTQQSLVGGFAKN------------PD 289 (307)
T ss_pred HHHHhcCCCCCcCCCCCCCCccchhhHHHHHHHHcCcc--cccCHHHHHHHHHHHcCCCCCCcCCC------------CC
Confidence 99999999999988654 23444578888888887753 23456789999999885 58998753 35
Q ss_pred CCCchhHHHHHHHHHHH
Q 010631 420 DRSHVVNTAWAMLALID 436 (505)
Q Consensus 420 ~~s~~~~Ta~ALlaL~~ 436 (505)
..++++.|.|+|.+|..
T Consensus 290 ~~~D~~ht~~~la~Lsl 306 (307)
T cd02895 290 SHPDPLHSYLGLAALSL 306 (307)
T ss_pred CCCChhHHHHHHHHHHh
Confidence 67899999999999863
No 39
>PLN02710 farnesyltranstransferase subunit beta
Probab=99.58 E-value=3.8e-13 Score=140.33 Aligned_cols=288 Identities=13% Similarity=0.172 Sum_probs=179.7
Q ss_pred HHHHHhhhhhceeeeCCCceeecCCCCChhHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccccccCCC
Q 010631 134 FKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHIS 213 (505)
Q Consensus 134 ~~~~~~~l~~~~~~~~~g~~~q~~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~ 213 (505)
..+|++.+.+.+.. -+..++....+.+|-+=+++.+|.--|..-+ +...++.++||.++|.++
T Consensus 46 ~~~H~~yl~~~l~~--lp~~~~~lDa~r~~~~Yw~L~sL~lLg~~l~-~~~~~~ii~~l~~cQ~~d-------------- 108 (439)
T PLN02710 46 REKHLEYLTRGLRQ--LGPSFSVLDANRPWLCYWILHSIALLGESLD-DELENDTIDFLSRCQDPN-------------- 108 (439)
T ss_pred HHHHHHHHHHHhhc--CChhhhhhhhhhHHHHHHHHHHHHHhCCccc-HHHHHHHHHHHHHhcCCC--------------
Confidence 66888888776432 2334444557899999999988887664211 334577899999999875
Q ss_pred CCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCc
Q 010631 214 KGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNP 293 (505)
Q Consensus 214 ~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~ 293 (505)
||++-.. ...++.-.|=.|+.+|..+.... ....-...+.++||.++|++||||....
T Consensus 109 -GGFgg~p--g~~~hl~~TY~Av~~L~iLg~~~------~l~~Idr~~l~~fl~s~q~~dGgF~~~~------------- 166 (439)
T PLN02710 109 -GGYGGGP--GQLPHLATTYAAVNTLVTIGGER------ALSSINREKLYTFLLRMKDPSGGFRMHD------------- 166 (439)
T ss_pred -cCCCCCC--CCCccHHHHHHHHHHHHHcCCch------hhcccCHHHHHHHHHHcCCCCCCcccCC-------------
Confidence 4433221 12356666777777776554210 0111124678999999999999997421
Q ss_pred ccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCC-CccchHHHHHHHH
Q 010631 294 AETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGV-CFTYGTWFGVKGL 372 (505)
Q Consensus 294 ~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~-~~~y~T~~al~aL 372 (505)
.+. .|- ..|-.++..+..++... ...+++.++||.+.|..|||+.++-+. ...--|++++.+|
T Consensus 167 ---~gE--~D~---R~tYcAlail~LL~~l~--------~~~~e~~~~~I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL 230 (439)
T PLN02710 167 ---GGE--MDV---RACYTAISVASLLNILD--------DELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAM 230 (439)
T ss_pred ---CCC--CCc---CCcHHHHHHHHHhCcCc--------hhhHHHHHHHHHHhCCCCCCCCCCCCCCCchHHHHHHHHHH
Confidence 111 121 12333333333333321 134789999999999999999876432 2222378888889
Q ss_pred HHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCC----------
Q 010631 373 VAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAET---------- 442 (505)
Q Consensus 373 ~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~---------- 442 (505)
...|.. +.-.+.+.++||+++|+.+||++... +...++.-+.|++-+|...+....
T Consensus 231 ~LLg~l--~~id~~~l~~WL~~rQ~~~GGF~GR~------------nKl~D~CYSfW~~a~L~lL~~~~~~~~~~~~~~~ 296 (439)
T PLN02710 231 ILINEV--DRLDLPSLINWVVFRQGVEGGFQGRT------------NKLVDGCYSFWQGGVFALLQQLVTIVDEQLQTGG 296 (439)
T ss_pred HHcCCc--cccCHHHHHHHHHHhcCcCCCcCCCC------------CCCCCchhhHHHHHHHHHHHHHhhcccccccccc
Confidence 888754 23357789999999999999997642 223445555666555544332100
Q ss_pred ----------C------------------------------------c-HHHHHHHHHHHhcC-cCCCCCCCCcccceec
Q 010631 443 ----------D------------------------------------P-TPLHRAARYLINSQ-MENGDYPQEEIMGVFN 474 (505)
Q Consensus 443 ----------d------------------------------------~-~~i~rgv~~L~~~Q-~~~G~w~~~~~~g~f~ 474 (505)
+ + -..+...+||+.+| .++||+...+ |..|
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~aL~~yIL~c~q~~~GG~~DkP--gk~~ 374 (439)
T PLN02710 297 SSIMFEELEDDACETSSSGKDDAGDTDSADYSKVGFDFIKASNQQMGPLFHSIALQQYILLCSQVLDGGLRDKP--GKSR 374 (439)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHcCCCCCCcCCCC--CCCC
Confidence 0 0 01235667998875 5679998765 2223
Q ss_pred cccccccCCchhhHHHHHHHHHHHH
Q 010631 475 RNCMISYSAYRNIFPIWALGEYRCR 499 (505)
Q Consensus 475 ~~~~~~y~~y~~~fpl~AL~~y~~~ 499 (505)
..|-++|.|-+|+..+..
T Consensus 375 -------D~YHT~y~LsGLSl~q~~ 392 (439)
T PLN02710 375 -------DYYHTCYCLSGLSVAQYS 392 (439)
T ss_pred -------chhHHHHHHHHHHHHhhc
Confidence 236678999999987654
No 40
>PLN02710 farnesyltranstransferase subunit beta
Probab=99.53 E-value=7e-13 Score=138.33 Aligned_cols=212 Identities=14% Similarity=0.181 Sum_probs=149.1
Q ss_pred chhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCc
Q 010631 229 SDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVE 308 (505)
Q Consensus 229 ~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~ 308 (505)
+..|=.+|.+|..+.. .++.+..++.++||.++|++||||+.... +.++..
T Consensus 72 ~~~~Yw~L~sL~lLg~--------~l~~~~~~~ii~~l~~cQ~~dGGFgg~pg---------------------~~~hl~ 122 (439)
T PLN02710 72 PWLCYWILHSIALLGE--------SLDDELENDTIDFLSRCQDPNGGYGGGPG---------------------QLPHLA 122 (439)
T ss_pred HHHHHHHHHHHHHhCC--------cccHHHHHHHHHHHHHhcCCCcCCCCCCC---------------------CCccHH
Confidence 4566667777665532 23455678899999999999999974211 124455
Q ss_pred chHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCccc-CCCCccchHHHHHHHHHHcCCCCCCcHHHHH
Q 010631 309 CTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGS-WGVCFTYGTWFGVKGLVAAGMNYSNSSSIRK 387 (505)
Q Consensus 309 ~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~-wg~~~~y~T~~al~aL~~~G~~~~~~~~i~r 387 (505)
.|-.+|.+|..++.. ... ..| ..++.++||.+.|++||||.+. +|...+-.|..|+..+...+.. ....+++
T Consensus 123 ~TY~Av~~L~iLg~~-~~l--~~I--dr~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l--~~~~~e~ 195 (439)
T PLN02710 123 TTYAAVNTLVTIGGE-RAL--SSI--NREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNIL--DDELVKG 195 (439)
T ss_pred HHHHHHHHHHHcCCc-hhh--ccc--CHHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcC--chhhHHH
Confidence 677788888877642 000 011 2578899999999999999864 3333333355555556666653 3456889
Q ss_pred HHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCCCCCC
Q 010631 388 ACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQE 467 (505)
Q Consensus 388 a~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~w~~~ 467 (505)
.++||+++|+.|||++.. ++..++.-.|.||+.+|...+..+ ...+++.++||+++|..+|+|...
T Consensus 196 ~~~~I~scQ~~dGGF~g~------------P~~EaH~gyTfcavAsL~LLg~l~--~id~~~l~~WL~~rQ~~~GGF~GR 261 (439)
T PLN02710 196 VGDYILSCQTYEGGIGGE------------PGAEAHGGYTFCGLAAMILINEVD--RLDLPSLINWVVFRQGVEGGFQGR 261 (439)
T ss_pred HHHHHHHhCCCCCCCCCC------------CCCCCchHHHHHHHHHHHHcCCcc--ccCHHHHHHHHHHhcCcCCCcCCC
Confidence 999999999999999864 355788889999999999888653 223788999999999999999866
Q ss_pred cccceeccccccccCCchhhHHHHHHHHHHHH
Q 010631 468 EIMGVFNRNCMISYSAYRNIFPIWALGEYRCR 499 (505)
Q Consensus 468 ~~~g~f~~~~~~~y~~y~~~fpl~AL~~y~~~ 499 (505)
. +..+..||- +|.+-+|+...+.
T Consensus 262 ~--nKl~D~CYS-------fW~~a~L~lL~~~ 284 (439)
T PLN02710 262 T--NKLVDGCYS-------FWQGGVFALLQQL 284 (439)
T ss_pred C--CCCCCchhh-------HHHHHHHHHHHHH
Confidence 3 346777764 5666666665443
No 41
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=99.47 E-value=5.3e-13 Score=131.40 Aligned_cols=158 Identities=9% Similarity=0.115 Sum_probs=112.7
Q ss_pred CchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCC
Q 010631 228 ISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCV 307 (505)
Q Consensus 228 d~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~ 307 (505)
|-+.|...+.-|+.+.+. .+.+...+++.||++||+++|++||||+.|.+.++ .+.++|+ |.|
T Consensus 42 DN~aT~~e~~fLa~~y~~----t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~-~Y~~~IT----fND-------- 104 (290)
T TIGR02474 42 DNGATVTEIRYLAQVYQQ----EKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKG-GYSDAIT----YND-------- 104 (290)
T ss_pred cCccHHHHHHHHHHHHHh----cCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcC-Ccccccc----cCc--------
Confidence 445577777777665432 24566789999999999999999999999987765 6666665 433
Q ss_pred cchHHHHHHHHHhhhhC------CCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCccc------------------
Q 010631 308 ECTSASIQALTSFKKLY------PGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTY------------------ 363 (505)
Q Consensus 308 ~~Ta~vl~aL~~~~~~~------~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y------------------ 363 (505)
+.+.+||++|..+.... ++...+++..+++||++||++.|.++|+|.+.|+.+|.-
T Consensus 105 ~am~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~ 184 (290)
T TIGR02474 105 NAMVNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSS 184 (290)
T ss_pred HHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCccccc
Confidence 24558899997654321 112235678999999999999999999999999987642
Q ss_pred -hHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHhccCCCCCC
Q 010631 364 -GTWFGVKGLVAAGMN-YSNSSSIRKACEFLLSKQRPSGGW 402 (505)
Q Consensus 364 -~T~~al~aL~~~G~~-~~~~~~i~ra~~~L~~~Q~~DGgW 402 (505)
.|.-++.-|+..-.+ ...-.+|..|++||.+...++--|
T Consensus 185 ~ES~~iv~~LM~~~~ps~~i~~ai~~A~~W~~~~~i~g~~~ 225 (290)
T TIGR02474 185 SESVGILLFLMTQPNPSAEIKEAIRAGVAWFDTSRIRGYAY 225 (290)
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHCCCCCcee
Confidence 155566666654322 122356777999999987765433
No 42
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.42 E-value=6.2e-14 Score=120.00 Aligned_cols=107 Identities=29% Similarity=0.409 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHH
Q 010631 259 LYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKR 338 (505)
Q Consensus 259 i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~r 338 (505)
|+++++||++.|++||||.. . ++ ++...|+.++.+|...+.. .+.++|+|
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~-~----------------~~------~~~~~t~~~~~al~~~~~~-------~~~~ai~k 50 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGY-N----------------WG------SDVFVTAALILALAAAGDA-------AVDEAIKK 50 (109)
T ss_dssp ---------------------------------------------------------------TS--------SSBSSHH
T ss_pred Cccccccccccccccccccc-c----------------cc------ccccccccccccccccCCC-------CcHHHHHH
Confidence 57899999999999999952 1 10 2356788888888887642 23468999
Q ss_pred HHHHHHHhccccCCCcccCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccC
Q 010631 339 AVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQR 397 (505)
Q Consensus 339 av~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~ 397 (505)
|++||.++|++||+|... +..+.+.|..++.+|...+.. ..++.++|+++||+++|.
T Consensus 51 a~~~l~~~Q~~dG~w~~~-~~~~~~~t~~~~~~l~~~~~~-~~~~~~~r~~~wi~~~~~ 107 (109)
T PF13243_consen 51 AIDWLLSHQNPDGGWGYS-GGEYVSMTAAAIAALALAGVY-PDDEAVERGLEWILSHQL 107 (109)
T ss_dssp HHHHHHH---TTS--S-T-S--HHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH--
T ss_pred HHHHHHHhcCCCCCCCCc-CCCCHHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccC
Confidence 999999999999999864 545566777777777777776 688999999999999975
No 43
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=4.4e-12 Score=120.32 Aligned_cols=174 Identities=25% Similarity=0.335 Sum_probs=126.1
Q ss_pred HHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHH
Q 010631 259 LYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKR 338 (505)
Q Consensus 259 i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~r 338 (505)
-++-|.|++++|+.+|||+.++.- | ++.--|-.+++-|+.+.... . --+.+
T Consensus 68 ~eeiv~~v~~C~~~~GGfa~~~Gh--------------------d-~hll~TlsAvQiL~~ydsi~-~-------~d~d~ 118 (329)
T KOG0366|consen 68 REEIVSFVLSCQHEDGGFAGCPGH--------------------D-PHLLYTLSAVQILALYDSIN-V-------LDRDK 118 (329)
T ss_pred HHHHHHHHHheecCCCCcCCCCCC--------------------C-hHHHHHHHHHHHHHHHcccc-c-------ccHHH
Confidence 456799999999999999865321 1 23445667777787765431 1 12456
Q ss_pred HHHHHHHhccccCCCcc-cCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccccccccccC
Q 010631 339 AVKFIEKIQELDGSWYG-SWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNL 417 (505)
Q Consensus 339 av~~L~~~Q~~DG~W~g-~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~ 417 (505)
-+.|+...|++||+|.| .||.-.+-=+..++.+|...|.- ....+++|++|++++-|-|||+|-.
T Consensus 119 v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~l--d~~nve~aVd~~~~CyN~DGGFG~~------------ 184 (329)
T KOG0366|consen 119 VASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKL--DTINVEKAVDFVLSCYNFDGGFGCR------------ 184 (329)
T ss_pred HHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhhH--HHhhHHHHHHHHHhhcccCCCcCCC------------
Confidence 78999999999999987 58854443355667777777764 4567889999999999999999864
Q ss_pred CCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCcccceecccccc
Q 010631 418 EGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFNRNCMI 479 (505)
Q Consensus 418 ~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~w~~~~~~g~f~~~~~~ 479 (505)
+|.+|+.-|-...+-||.-.+..+. ...++.-.||.++|.+.|+-...+- -.|.+||-
T Consensus 185 pGaESHagqifcCvgaLai~~~L~~--vd~d~lgwwlceRQ~~sGGLNGRpe--KlpDVCYS 242 (329)
T KOG0366|consen 185 PGAESHAGQIFCCVGALAITGKLHL--VDRDLLGWWLCERQLPSGGLNGRPE--KLPDVCYS 242 (329)
T ss_pred CCcccccceehhhHHHHHHccchhh--cCHHHHHHHHHhccCCCCCCCCCcc--cCcchhhH
Confidence 3667887777777777877776532 1245677899999999999766532 27888863
No 44
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=99.30 E-value=5.7e-12 Score=132.65 Aligned_cols=211 Identities=20% Similarity=0.247 Sum_probs=153.9
Q ss_pred eeecCCCCChhHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCc------ccCCCC
Q 010631 153 KVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFS------TADHGW 226 (505)
Q Consensus 153 ~~q~~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~------~~~~~~ 226 (505)
+...++.....||+-++.++....- .+.+.++++|+..+|+.. |+|.... ...-++|-=. ..-..+
T Consensus 255 ~~~~~~ypd~d~T~~~~~al~~~~~----~~~~~~~l~~V~~~q~~~---g~~a~~e-~~~~~a~~~~L~~~~~~~~~~~ 326 (517)
T COG1657 255 SNINTGYPDADDTAGVVRALIGVQS----LPNFELGLDWVLYMQNKL---GGLAVYE-DRNLHAWLRLLPPAEVKAMVDP 326 (517)
T ss_pred eecccCCCCchhhhHHHHHHHhhcc----hhhHHhhhhHhhhccccc---Cceeeec-cccccHHHhhCCHhhccccccC
Confidence 3333335677889999999998763 345777999999999873 6665533 2222333210 011234
Q ss_pred CCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCC
Q 010631 227 PISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPC 306 (505)
Q Consensus 227 pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~ 306 (505)
+-+|||+.++.+|..+....+ +. +...+++|++||++.|.++|.| |+.+.+.+
T Consensus 327 s~adct~~~~~~l~a~~~yl~---~~--~~~~i~~a~e~LL~~Q~~~GsW--------------------~g~w~v~~-- 379 (517)
T COG1657 327 STADCTHRVVLALAALNAYLE---AY--DGQPIERALEWLLSDQEPDGSW--------------------YGRWGVCY-- 379 (517)
T ss_pred CcccCCCccHHHHhhhhhccc---cc--cCCcccHHHhhhhhhccccCce--------------------eeEEEEEE--
Confidence 568999999988876543211 00 1466999999999999999999 45555555
Q ss_pred CcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCC-----------ccchHHHHHHHHHHc
Q 010631 307 VECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVC-----------FTYGTWFGVKGLVAA 375 (505)
Q Consensus 307 ~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~-----------~~y~T~~al~aL~~~ 375 (505)
++.|+.++.+|...+..+ ++...+++++.||...|.+||+|++.+-.+ +.-.|.+++.++..+
T Consensus 380 iY~~s~a~~~l~~~g~~~------~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~t~~sl~~~~~wal~~~~~a 453 (517)
T COG1657 380 IYGTSGALSALALVGETD------ENEVLVRKLISWLVSKQMPDGGWGEAKEAISDPVYTGTESSLLVQTNWALIALLTA 453 (517)
T ss_pred EEehhhhhhhhhccCccc------cchHHHHHHHHHhhhccccCCCcccccccccccccccccchhhcchhHHHHHHHHh
Confidence 678999999999887642 234689999999999999999999865321 222388999999988
Q ss_pred CCCCCCcHHHHHHHHHHHhccCCCCCCCcCc
Q 010631 376 GMNYSNSSSIRKACEFLLSKQRPSGGWGESY 406 (505)
Q Consensus 376 G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~ 406 (505)
..+ +.+.+++++++|.+.|.++|.|++..
T Consensus 454 ~~~--~~~~i~~~~~~~~~~~~~~g~~~~~~ 482 (517)
T COG1657 454 LEP--NQEAIKPGINLLVSDQEPDGSWREAE 482 (517)
T ss_pred ccc--chhhhcccccccccCcCCCCccccce
Confidence 776 66779999999999999999998753
No 45
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=99.28 E-value=1.2e-10 Score=114.43 Aligned_cols=222 Identities=17% Similarity=0.161 Sum_probs=141.5
Q ss_pred HHhhhhhceeeeCCCc--eeecCCCCChhHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHhcccCCCCCCCccccccCCC
Q 010631 137 HIPRINDYLWIAEDGM--KVQGYNGSQLWDTAFAVQAIISTNL-VEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHIS 213 (505)
Q Consensus 137 ~~~~l~~~~~~~~~g~--~~q~~~~s~vwDTa~a~~AL~~ag~-~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~ 213 (505)
+-+++..| +.+||. .+.....+.+|-||+++..|.++.. ..-....|.++++||+++|..+ |.|....
T Consensus 2 GYqr~L~y--~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~d---G~F~e~~---- 72 (246)
T PF07678_consen 2 GYQRQLSY--RRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPD---GSFEEDG---- 72 (246)
T ss_dssp HHHHHHTT--B-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETT---SEB--SS----
T ss_pred chHHHhcC--CCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC---CccccCC----
Confidence 44566666 466773 2323336899999999999998743 2212678999999999999886 6664322
Q ss_pred CCCCCCcccCCC--CCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhccc
Q 010631 214 KGAWPFSTADHG--WPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVL 291 (505)
Q Consensus 214 ~GgW~f~~~~~~--~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~ 291 (505)
+-+...-.+ ..++..||+++.||+......+. ..+.....+.+|++||.+....
T Consensus 73 ---~~~~~~~~g~~~~~~~lTA~VliAL~e~~~~~~~--~~~~~~~~i~kA~~~L~~~~~~------------------- 128 (246)
T PF07678_consen 73 ---PVIHREMQGGVEDDIALTAYVLIALLEAGSLCDS--EKPEYENAINKALNYLERHLDN------------------- 128 (246)
T ss_dssp ---S-SSGGGSGGGTHHHHHHHHHHHHHHHCHCCHTT--THHCHHHHHHHHHHHHHHHHGC-------------------
T ss_pred ---CccccccCCCCCCCeeehHHHHHHHHhhhhhccc--cchhhHHHHHHHHHHHHHhccc-------------------
Confidence 111111111 13577899999999876532210 0123568899999999875110
Q ss_pred CcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCc----------
Q 010631 292 NPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCF---------- 361 (505)
Q Consensus 292 ~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~---------- 361 (505)
...+...|.+-.||...++ .+..+++++-|.+....+|+- -.|....
T Consensus 129 ------------~~~~Y~lAl~aYAL~la~~----------~~~~~~~~~~L~~~a~~~~~~-~~W~~~~~~~~~~~~~~ 185 (246)
T PF07678_consen 129 ------------IQDPYTLALVAYALALAGD----------SPQASKLLNKLNSMATTEGGL-RYWSSDESSSSSSSPWS 185 (246)
T ss_dssp ------------TSSHHHHHHHHHHHHHTTT----------CHHHHHHHHHHHCHCEETTTT-CEE-SSSSSSSSSSTTT
T ss_pred ------------cCCHHHHHHHHHHHHhhcc----------cchHHHHHHHHHHhhhhcccc-CcccCCccccccccccc
Confidence 0112334444456666542 145677888888776665432 1232111
Q ss_pred ------cchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHH
Q 010631 362 ------TYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALI 435 (505)
Q Consensus 362 ------~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~ 435 (505)
+-.|+++|.++...+ +.+...+.++||.+.|+..|||+. .-.|..||.||.
T Consensus 186 ~~~s~~vEtTaYaLLa~l~~~----~~~~~~~iv~WL~~qr~~~Ggf~S-------------------TQdTvvaL~AL~ 242 (246)
T PF07678_consen 186 RGSSLDVETTAYALLALLKRG----DLEEASPIVRWLISQRNSGGGFGS-------------------TQDTVVALQALA 242 (246)
T ss_dssp -SHHHHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHHCTTTTSSTSS-------------------HHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHhcCCCCccCc-------------------HHHHHHHHHHHH
Confidence 234899999998873 456888999999999999999853 247999999997
Q ss_pred Hc
Q 010631 436 DA 437 (505)
Q Consensus 436 ~a 437 (505)
..
T Consensus 243 ~Y 244 (246)
T PF07678_consen 243 EY 244 (246)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 46
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2e-10 Score=112.17 Aligned_cols=211 Identities=20% Similarity=0.277 Sum_probs=142.7
Q ss_pred CCChhHHHHHHHHHHhcCCCc-chHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHH
Q 010631 159 GSQLWDTAFAVQAIISTNLVE-EYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLK 237 (505)
Q Consensus 159 ~s~vwDTa~a~~AL~~ag~~~-~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~ 237 (505)
.+++=.|-+|+++|+-.+--+ ..+..-..-.+||.+.|+++ |.++. -.| ..+| |-.+..
T Consensus 101 ~~hL~sT~~Ai~~L~~~d~~~~~~~idr~~l~~fi~~lk~pd---GsF~~-------~~~---------gevD-tr~~Y~ 160 (342)
T COG5029 101 DSHLASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPD---GSFRS-------DLE---------GEVD-TRFLYI 160 (342)
T ss_pred chhHHHHHHHHHHHHHhccccccchhhHHHHHHHHHhccCCC---Cceec-------ccC---------Ccch-HHHHHH
Confidence 577888999999998764221 11112224678999999987 55432 111 1232 222333
Q ss_pred HhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHH
Q 010631 238 ASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQAL 317 (505)
Q Consensus 238 aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL 317 (505)
|+..+.= -| ..+.+-.+-+|+||.++||=||||+.-. .+| ++..-|..++.+|
T Consensus 161 al~ilsl-----lg-~~~~~~~e~~vdyl~kCqnyeGGFg~~p------------~aE---------aHag~tFcalaal 213 (342)
T COG5029 161 ALSILSL-----LG-DLDKELFEGAVDYLKKCQNYEGGFGLCP------------YAE---------AHAGYTFCALAAL 213 (342)
T ss_pred HHHHHHH-----Hh-hcchhhhHHHHHHHHHhhccCCcccCCC------------chh---------hccchHHHHHHHH
Confidence 3332211 01 2356678889999999999999998532 122 3355688888999
Q ss_pred HHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccC----CCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Q 010631 318 TSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSW----GVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLL 393 (505)
Q Consensus 318 ~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~w----g~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~ 393 (505)
+.++...+- + .+++-+.||..+|.+.||+.||- .+|| .+|++..|+..|.. .--.-.+..+||+
T Consensus 214 alL~~Ld~l------s-~~E~l~~Wl~~RQ~ssgGl~GR~nKl~D~CY---s~WvlsSl~il~~~--~~in~e~L~~yiL 281 (342)
T COG5029 214 ALLGKLDKL------S-DVEKLIRWLAERQLSSGGLNGRSNKLVDTCY---SFWVLSSLAILGKL--DFINTEELTDYIL 281 (342)
T ss_pred HHHhccccc------c-hHHHHHHHHHHcccccCCcCCCcccCccchh---hhhhcchHHhcchh--hhcCHHHHHHHHH
Confidence 988876432 1 27899999999999999998874 3566 57888888877632 1112245789999
Q ss_pred hccCC-CCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCC
Q 010631 394 SKQRP-SGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQA 440 (505)
Q Consensus 394 ~~Q~~-DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~ 440 (505)
.+|.+ .||+... ++..+++++|+++|.||...+..
T Consensus 282 ~c~q~~sGGfsdr------------p~~~~D~yHt~~~lagLsl~~~k 317 (342)
T COG5029 282 DCQQETSGGFSDR------------PGEEPDVYHTCFGLAGLSLIEYK 317 (342)
T ss_pred hhcccCCCCCCCC------------CcccchHHHHHHHHHHHHHhccC
Confidence 99988 6888653 36689999999999999887654
No 47
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.5e-10 Score=108.48 Aligned_cols=239 Identities=19% Similarity=0.260 Sum_probs=150.3
Q ss_pred HHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHH
Q 010631 185 LKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVN 264 (505)
Q Consensus 185 l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~ 264 (505)
-++.+.|++++|+.+ ||++-... .-|.+-.|-.|+..|....+. ..--.++-+.
T Consensus 68 ~eeiv~~v~~C~~~~---------------GGfa~~~G--hd~hll~TlsAvQiL~~ydsi---------~~~d~d~v~~ 121 (329)
T KOG0366|consen 68 REEIVSFVLSCQHED---------------GGFAGCPG--HDPHLLYTLSAVQILALYDSI---------NVLDRDKVAS 121 (329)
T ss_pred HHHHHHHHHheecCC---------------CCcCCCCC--CChHHHHHHHHHHHHHHHccc---------ccccHHHHHH
Confidence 456788999999954 66553322 114555677777666544332 1223455789
Q ss_pred HHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHH
Q 010631 265 VIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIE 344 (505)
Q Consensus 265 ~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~ 344 (505)
|+.+.|++||+|.. +.||. +|... +-.+|.+|+.++... .-.+++||+|+.
T Consensus 122 yi~gLq~edGsF~g----------------D~wGE--vDTRf---s~~av~~L~lLg~ld--------~~nve~aVd~~~ 172 (329)
T KOG0366|consen 122 YIKGLQQEDGSFSG----------------DIWGE--VDTRF---SYCAVACLALLGKLD--------TINVEKAVDFVL 172 (329)
T ss_pred HHHhhcCcCCcccC----------------Ccccc--cchhh---hHHHHHHHHHHhhHH--------HhhHHHHHHHHH
Confidence 99999999999952 12342 34322 333455566555542 136899999999
Q ss_pred HhccccCCCcccCCCCccch-HHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCc
Q 010631 345 KIQELDGSWYGSWGVCFTYG-TWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSH 423 (505)
Q Consensus 345 ~~Q~~DG~W~g~wg~~~~y~-T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~ 423 (505)
+.-+-||+|+.+-|....-+ ....+-+|+..|.-+. -..++...||..+|-+.||-.... ..-++
T Consensus 173 ~CyN~DGGFG~~pGaESHagqifcCvgaLai~~~L~~--vd~d~lgwwlceRQ~~sGGLNGRp------------eKlpD 238 (329)
T KOG0366|consen 173 SCYNFDGGFGCRPGAESHAGQIFCCVGALAITGKLHL--VDRDLLGWWLCERQLPSGGLNGRP------------EKLPD 238 (329)
T ss_pred hhcccCCCcCCCCCcccccceehhhHHHHHHccchhh--cCHHHHHHHHHhccCCCCCCCCCc------------ccCcc
Confidence 99999999986555322111 2345666776665422 123567789999999999965431 12356
Q ss_pred hhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCc-CCCCCCCCcccce--ecccc------ccccCCchhhHHHHHHH
Q 010631 424 VVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQM-ENGDYPQEEIMGV--FNRNC------MISYSAYRNIFPIWALG 494 (505)
Q Consensus 424 ~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~-~~G~w~~~~~~g~--f~~~~------~~~y~~y~~~fpl~AL~ 494 (505)
+.-.-|+|..|...|+.. ...-++-++|++++|. ++|+|...+-.-+ |.-.| .+.|++.+.+-|..+|-
T Consensus 239 VCYSwWvlsSL~iigrl~--wId~ekL~~FIl~cQd~~~GGfsDRpgd~~D~fHt~FgiAGLSLlg~~~l~~idP~fcmp 316 (329)
T KOG0366|consen 239 VCYSWWVLSSLAIIGRLH--WIDREKLTKFILACQDEETGGFSDRPGDEVDIFHTLFGIAGLSLLGYPGLKPIDPIFCMP 316 (329)
T ss_pred hhhHHHHHhHHHHhhhhh--hccHHHHHHHHHhcCCCCCCCcCCCCCCcccHHHHHHHHhhHhhhCCCCceecCCcccCc
Confidence 777889999999888763 2235788999999998 7799987542222 43322 24455555444444443
No 48
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.27 E-value=6.2e-10 Score=111.28 Aligned_cols=222 Identities=16% Similarity=0.139 Sum_probs=136.2
Q ss_pred HHHHHHHhhhhhceeeeCCCce--eecCCCCChhHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHhcccCCCCCCCcccc
Q 010631 132 EAFKLHIPRINDYLWIAEDGMK--VQGYNGSQLWDTAFAVQAIISTNLV-EEYGATLKKAHKYIKDSQVLEDCPGNLDFW 208 (505)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~g~~--~q~~~~s~vwDTa~a~~AL~~ag~~-~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~ 208 (505)
..+++++++|..+ +.+||.+ ..+.+.+++|.|++++++|.+++.. ....+.+.||++||.+.|..+ |+|...
T Consensus 49 ~~i~~~~~~l~~~--Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~---g~~~~~ 123 (282)
T cd02891 49 EYIRKGYQRLLTY--QRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKED---GSFREL 123 (282)
T ss_pred HHHHHHHHHHHhh--cCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCC---CCcCCC
Confidence 3477888888887 5677643 2333378999999999999976321 112578999999999999876 555443
Q ss_pred ccCCCCCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchh
Q 010631 209 YRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWL 288 (505)
Q Consensus 209 ~~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l 288 (505)
.+....+. .++..++++.||.++.+|..... . ....+.++++||.+.... .
T Consensus 124 ~~~~~~~~-----~~~~~~~~~~tA~al~~L~~~g~--------~-~~~~~~~a~~~L~~~~~~---~------------ 174 (282)
T cd02891 124 GPVIHREM-----KGGVDDSVSLTAYVLIALAEAGK--------A-CDASIEKALAYLETQLDG---L------------ 174 (282)
T ss_pred CCccCHhh-----cCCcCCCcchHHHHHHHHHHhcc--------c-chHHHHHHHHHHHHhccc---C------------
Confidence 33222111 01234678899999999875432 1 256899999999986543 1
Q ss_pred cccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCC-------CcccCCC-C
Q 010631 289 EVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGS-------WYGSWGV-C 360 (505)
Q Consensus 289 ~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~-------W~g~wg~-~ 360 (505)
.++...+.+..+|...+.. ....+.++-|.+.-...+. |....+. .
T Consensus 175 ----------------~~~~~~a~la~al~~~g~~----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~ 228 (282)
T cd02891 175 ----------------LDPYALAILAYALALAGDS----------TRADEALKKLLEAAREKGGTAHWSLSWPGDYGSSL 228 (282)
T ss_pred ----------------CChHHHHHHHHHHHHcCcc----------HHHHHHHHHHHHHhhhcCCcccccCCCCCCCCchh
Confidence 0122344444555555431 2344455555544333332 2211111 1
Q ss_pred ccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHH
Q 010631 361 FTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALID 436 (505)
Q Consensus 361 ~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ 436 (505)
-+..|++++.+....+ +.+...+.+.||.+.++.+|+|.. .-.|++||+||..
T Consensus 229 ~~~a~a~all~~~~~~----~~~~~~~~~~~L~~~~~~~~~~~s-------------------Tq~t~~al~AL~~ 281 (282)
T cd02891 229 RVEATAYALLALLKLG----DLEEAGPIAKWLAQQRNSGGGFLS-------------------TQDTVVALQALAA 281 (282)
T ss_pred hHHHHHHHHHHHHhcC----ChhhHHHHHHHHHHcCCCCCCccc-------------------HHHHHHHHHHHHh
Confidence 2234555555554322 345678899999998888888853 3579999999964
No 49
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=8.3e-11 Score=114.82 Aligned_cols=179 Identities=19% Similarity=0.198 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHH
Q 010631 257 KRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCI 336 (505)
Q Consensus 257 ~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i 336 (505)
..-++.+.+++++++++|||+.+... -++...|-.+|+.|..+...+--.+ ...
T Consensus 75 ~~~er~i~~v~~~~~~~G~f~~~~g~---------------------~~hL~sT~~Ai~~L~~~d~~~~~~~-----idr 128 (342)
T COG5029 75 VDKERKISFVLGCVGPSGGFGGGPGQ---------------------DSHLASTVFAIQSLAMLDSLDVLSR-----IDR 128 (342)
T ss_pred hhhhhhheeeeeeecCCCCcCCCCcc---------------------chhHHHHHHHHHHHHHhccccccch-----hhH
Confidence 34567889999999999999754211 1234568888999988764311111 123
Q ss_pred HHHHHHHHHhccccCCCcc-cCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccccccccc
Q 010631 337 KRAVKFIEKIQELDGSWYG-SWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYS 415 (505)
Q Consensus 337 ~rav~~L~~~Q~~DG~W~g-~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~ 415 (505)
++-.+||...|+|||+|.+ .+|...+=....|+..|...|. .+.+..+-+++||+++||-|||+|--
T Consensus 129 ~~l~~fi~~lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~--~~~~~~e~~vdyl~kCqnyeGGFg~~---------- 196 (342)
T COG5029 129 DSLASFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGD--LDKELFEGAVDYLKKCQNYEGGFGLC---------- 196 (342)
T ss_pred HHHHHHHHhccCCCCceecccCCcchHHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHhhccCCcccCC----------
Confidence 4678999999999999975 3554333334445555566663 35677788999999999999999863
Q ss_pred cCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCcccceeccccc
Q 010631 416 NLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFNRNCM 478 (505)
Q Consensus 416 ~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~w~~~~~~g~f~~~~~ 478 (505)
++.+++.-+|..||-+|...+..+.-.+ +++.++||..+|.+.|++...+ --++.+||
T Consensus 197 --p~aEaHag~tFcalaalalL~~Ld~ls~-~E~l~~Wl~~RQ~ssgGl~GR~--nKl~D~CY 254 (342)
T COG5029 197 --PYAEAHAGYTFCALAALALLGKLDKLSD-VEKLIRWLAERQLSSGGLNGRS--NKLVDTCY 254 (342)
T ss_pred --CchhhccchHHHHHHHHHHHhcccccch-HHHHHHHHHHcccccCCcCCCc--ccCccchh
Confidence 2446777788888888777766532122 8999999999999999887653 22677775
No 50
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.2e-08 Score=97.09 Aligned_cols=303 Identities=18% Similarity=0.184 Sum_probs=164.3
Q ss_pred HHHHHHHhhhhhceeeeCCCceeecCCCCChhHHHHHHHHHHhcCCCcchH-HHHHHHHHHHHhcccCCCCCCCc-cccc
Q 010631 132 EAFKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYG-ATLKKAHKYIKDSQVLEDCPGNL-DFWY 209 (505)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~g~~~q~~~~s~vwDTa~a~~AL~~ag~~~~~~-~~l~~A~~~L~~~Q~~~~~~Gd~-~~~~ 209 (505)
-..+||+..+++.+-.-| ++++..++=-++++-.|+..-.+-+..+ ---+.-++|+.+.|+.....+.- ...+
T Consensus 11 ~~~~kH~~ff~RhL~llP-----~~y~shd~~R~tiafFaisGLd~L~~ld~v~k~d~i~Wiy~~~v~~~dr~~~k~~GF 85 (347)
T KOG0367|consen 11 FERKKHIKFFERHLQLLP-----SPYQSHDTNRLTIAFFAISGLDLLDALDSVDKDDIIEWIYKLQVTPTDRTNLKICGF 85 (347)
T ss_pred hhHHHHHHHHHHHHHhCC-----CcccccccchHHHHHHHHcchhhhhhhhccchhHHHHHHHhceeccccCCCceeeee
Confidence 346789988887754323 2333333334555555554332211100 01234578999999974101110 0112
Q ss_pred cCCCCCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhc
Q 010631 210 RHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLE 289 (505)
Q Consensus 210 ~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~ 289 (505)
+....+.-++.+.....| -+|+.+.+|..+.-...+. ..++.+. -++++..+|.+||+|.+-..+.
T Consensus 86 ~Gsr~~~~p~~~~~~~~~---~lA~Ty~sl~~L~~lGddL--srlDrks---il~~v~~~Q~~dGsF~~~~~GS------ 151 (347)
T KOG0367|consen 86 RGSRSMNIPIATNTYNEP---HLAMTYTSLACLVILGDDL--SRLDRKS---ILRFVSACQRPDGSFVSINVGS------ 151 (347)
T ss_pred eeeccccCCCCCCCCcch---hHHHHHHHHHHHHHHcchH--hhhhHHH---HHHHHHHhcCCCCceeecCCCC------
Confidence 222233333433222223 3555555544332111000 0123333 4677889999999997432111
Q ss_pred ccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCC-CccchHHHH
Q 010631 290 VLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGV-CFTYGTWFG 368 (505)
Q Consensus 290 ~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~-~~~y~T~~a 368 (505)
..|-..++|.+.+...|...... -.++++.||++.|+=||+++---|. ...=.|..|
T Consensus 152 -----------e~DmRFvYcA~aI~ymLd~~s~i-----------D~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCA 209 (347)
T KOG0367|consen 152 -----------ESDMRFVYCAVAICYMLDFWSGI-----------DKEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCA 209 (347)
T ss_pred -----------chhhHHHHHHHHHHHHhcccccc-----------CHHHHHHHHHHhhccccccccCCCCCCCcchhHHH
Confidence 11223355665555555433221 2578999999999999999743322 222237777
Q ss_pred HHHHHHcCCC--C--CCcHHHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCc
Q 010631 369 VKGLVAAGMN--Y--SNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDP 444 (505)
Q Consensus 369 l~aL~~~G~~--~--~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~ 444 (505)
+.+|...|.- . .+...++|.++||+.+|..+||+.. ....++.|.||.-.+......+.++
T Consensus 210 lAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sgGfqG---------------R~NKp~DTCYaFWigasLklL~~~~ 274 (347)
T KOG0367|consen 210 LASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSGGFQG---------------RTNKPVDTCYAFWIGASLKLLDADW 274 (347)
T ss_pred HHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccCCcCC---------------CCCCCchhHHHHHHHHHHHHccchH
Confidence 7777776642 1 2333489999999999999999743 2344567777665554433222122
Q ss_pred H-HHHHHHHHHHhcCcCC-CCCCCCcccceeccccccccCCchhhHHHHHHHHHHHH
Q 010631 445 T-PLHRAARYLINSQMEN-GDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGEYRCR 499 (505)
Q Consensus 445 ~-~i~rgv~~L~~~Q~~~-G~w~~~~~~g~f~~~~~~~y~~y~~~fpl~AL~~y~~~ 499 (505)
- .-++.-+||+++|..- |+|..-+ +.+|.. |-.+|.+-||+.-..+
T Consensus 275 ~~d~~~lr~fll~~Q~~~iGGFsK~P--~~~pD~-------~HsylG~~alal~ee~ 322 (347)
T KOG0367|consen 275 LIDKQVLRKFLLSTQDKLIGGFSKWP--EEDPDL-------LHSYLGLAALALLEEK 322 (347)
T ss_pred hhhHHHHHHHHHHhhhhhcCcccCCC--ccCchH-------HHHHHHHHHHHHhcCC
Confidence 2 2445667999999887 8854432 124443 4567888888865443
No 51
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=98.91 E-value=2.3e-08 Score=98.91 Aligned_cols=152 Identities=13% Similarity=0.152 Sum_probs=96.5
Q ss_pred cchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCcc------c---hHHHHHHHHHHcCC-
Q 010631 308 ECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFT------Y---GTWFGVKGLVAAGM- 377 (505)
Q Consensus 308 ~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~------y---~T~~al~aL~~~G~- 377 (505)
..|...|..|+.+-...+ .+.+.+++.||++||++.|.++|||+-.+..... | ++.-+|..|..+..
T Consensus 44 ~aT~~e~~fLa~~y~~t~---d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~ 120 (290)
T TIGR02474 44 GATVTEIRYLAQVYQQEK---NAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANG 120 (290)
T ss_pred ccHHHHHHHHHHHHHhcC---chhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhc
Confidence 457778888888765433 3456789999999999999999999865542211 1 25567777754321
Q ss_pred -C----------CCCcHHHHHHHHHHHhccCCCCCCCcCccccccc-ccccCCC---C-CC-chhHHHHHHHHHHHcCCC
Q 010631 378 -N----------YSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKK-VYSNLEG---D-RS-HVVNTAWAMLALIDAGQA 440 (505)
Q Consensus 378 -~----------~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~-~y~~~~~---~-~s-~~~~Ta~ALlaL~~ag~~ 440 (505)
. .....+++||+++|++.|-.+|||-...--+.+. .+.|... + .| ....|+-.+..||....+
T Consensus 121 ~~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~p 200 (290)
T TIGR02474 121 KDPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNP 200 (290)
T ss_pred cCCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCCC
Confidence 1 0235789999999999999888654332211111 1222111 0 12 223466667777766433
Q ss_pred CCCc---HHHHHHHHHHHhcCcCCCCC
Q 010631 441 ETDP---TPLHRAARYLINSQMENGDY 464 (505)
Q Consensus 441 ~~d~---~~i~rgv~~L~~~Q~~~G~w 464 (505)
++ ++|+.|++||.+...++=.|
T Consensus 201 --s~~i~~ai~~A~~W~~~~~i~g~~~ 225 (290)
T TIGR02474 201 --SAEIKEAIRAGVAWFDTSRIRGYAY 225 (290)
T ss_pred --CHHHHHHHHHHHHHHHHCCCCCcee
Confidence 23 37999999999987665434
No 52
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=9.8e-08 Score=94.37 Aligned_cols=286 Identities=18% Similarity=0.240 Sum_probs=167.1
Q ss_pred HHHHhhhhhceeeeCCCceeecCCCCChhHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCC
Q 010631 135 KLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISK 214 (505)
Q Consensus 135 ~~~~~~l~~~~~~~~~g~~~q~~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~ 214 (505)
++|+..|.+.+..-+.-. ..-+-|.-|-.=+++.+|.--+..-+ ++..+++++||..+|.++
T Consensus 75 ~kH~~YL~~~Lr~Lp~~~--~~LDASR~Wm~YWil~sl~lL~~~~d-d~v~~~~i~fL~~c~~Pe--------------- 136 (423)
T KOG0365|consen 75 QKHLMYLDKMLRQLPSQY--TCLDASRPWMCYWILNSLALLDEWLD-DDVKENAIDFLFTCQGPE--------------- 136 (423)
T ss_pred HHHHHHHHHHHHhCCCcc--cccccCcchhHHHHHHHHHHhcCcCC-HHHHHHHHHHHHhcCCCC---------------
Confidence 477777777654333322 22246888999999988887664323 578999999999999876
Q ss_pred CCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcc
Q 010631 215 GAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPA 294 (505)
Q Consensus 215 GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~ 294 (505)
||+ .-.+..+|..--|=.|+.||..+.+... .+.-.-.+-.+||.++.++||||.-...
T Consensus 137 GGf--gGGPGQl~HLA~TYAAVnaL~~~~~e~A------~~~InR~~l~~fL~slK~~dGgFrmh~~------------- 195 (423)
T KOG0365|consen 137 GGF--GGGPGQLPHLAPTYAAVNALCLCGSEDA------YSSINREKLYQFLFSLKDPDGGFRMHVE------------- 195 (423)
T ss_pred CCC--CCCCccchhhhHHHHHHHHHHhcCcHHH------HHHhhHHHHHHHHHHhcCCCCCeEeecC-------------
Confidence 442 2233445777778889999876653210 1111223468999999999999964221
Q ss_pred cccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCccch--HHHHHHHH
Q 010631 295 ETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYG--TWFGVKGL 372 (505)
Q Consensus 295 e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~--T~~al~aL 372 (505)
| .+|-..++|.. ++..|... +. ++..+.-.+||.+.|+=.||++|.-|. -.+| |..++.||
T Consensus 196 ---G--E~DvRs~YcA~-svasllni----~~------deL~eG~~~wi~~CQtyEGG~GG~P~~-EAHGGYTFCalAal 258 (423)
T KOG0365|consen 196 ---G--EVDVRSAYCAL-SVASLLNI----PM------DELFEGTLDWIASCQTYEGGFGGEPGV-EAHGGYTFCALAAL 258 (423)
T ss_pred ---C--cchHHHHHHHH-HHHHHHCC----Cc------HHHHHHHHHHHHhcccccCCcCCCccc-cccCCeeHHHHHHH
Confidence 1 12322222222 22222211 21 245677889999999999999875443 1122 66677777
Q ss_pred HHcCCCCCCcHHHHHHHHHHHhccC-CCCCCCcCcccccccccccCCCCCCchhHHH-HHHH-HHHH-cCCCCCC-cHHH
Q 010631 373 VAAGMNYSNSSSIRKACEFLLSKQR-PSGGWGESYLSCQKKVYSNLEGDRSHVVNTA-WAML-ALID-AGQAETD-PTPL 447 (505)
Q Consensus 373 ~~~G~~~~~~~~i~ra~~~L~~~Q~-~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta-~ALl-aL~~-ag~~~~d-~~~i 447 (505)
+..+.- +.-.+++..+|..++|. ..||+......-.|.-| +..+-| .+|+ +... ++..-.. --..
T Consensus 259 alLn~~--d~ln~~~Ll~W~~~RQm~~E~GFqGRtNKLVDGCY--------SFWvga~~~il~~~~~~~~~s~~~~~F~~ 328 (423)
T KOG0365|consen 259 ALLNEM--DQLNLEKLLEWAVRRQMRFEGGFQGRTNKLVDGCY--------SFWVGASAPILQAFYSSAGHSLEHLLFNK 328 (423)
T ss_pred HHHhhh--hhhCHHHHHHHHHHhhhhhhccccccccchhhhhH--------HHHhcchHHHHHHHhcccccchhhhhcCH
Confidence 766643 45567889999999998 58898653211111111 111111 1111 1111 1221000 0013
Q ss_pred HHHHHHHHh-cCcCCCCCCCCcccceeccccccccCCchhhHHHHHHHH
Q 010631 448 HRAARYLIN-SQMENGDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGE 495 (505)
Q Consensus 448 ~rgv~~L~~-~Q~~~G~w~~~~~~g~f~~~~~~~y~~y~~~fpl~AL~~ 495 (505)
+.-.+|++- +|.++|++...+-. |+.| |-+.+.|..|+-
T Consensus 329 ~~LqeYIL~CcQ~~~GGlrDKP~K---~~Df------YHTCYcLsGLSi 368 (423)
T KOG0365|consen 329 EALQEYILLCCQSPSGGLRDKPGK---PRDF------YHTCYCLSGLSI 368 (423)
T ss_pred HHHHHHHHhhccCCCCCccCCCCC---Ccch------hhhhhHhcchhH
Confidence 344566554 59999999876532 3333 557788888873
No 53
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=9.1e-08 Score=94.61 Aligned_cols=174 Identities=17% Similarity=0.227 Sum_probs=116.0
Q ss_pred CccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhh
Q 010631 252 EPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQED 331 (505)
Q Consensus 252 ~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~ 331 (505)
..++++...+++++|..+|.|.|||+.-. . ..++...|-.+|.+|...+... .++ .
T Consensus 115 ~~~dd~v~~~~i~fL~~c~~PeGGfgGGP-----G----------------Ql~HLA~TYAAVnaL~~~~~e~-A~~--~ 170 (423)
T KOG0365|consen 115 EWLDDDVKENAIDFLFTCQGPEGGFGGGP-----G----------------QLPHLAPTYAAVNALCLCGSED-AYS--S 170 (423)
T ss_pred CcCCHHHHHHHHHHHHhcCCCCCCCCCCC-----c----------------cchhhhHHHHHHHHHHhcCcHH-HHH--H
Confidence 35688999999999999999999986321 1 1244556888889998876431 111 1
Q ss_pred hHHHHHHHHHHHHHhccccCCCcccC-CCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCccccc
Q 010631 332 VDHCIKRAVKFIEKIQELDGSWYGSW-GVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQ 410 (505)
Q Consensus 332 i~~~i~rav~~L~~~Q~~DG~W~g~w-g~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~ 410 (505)
| ..++-..||.+..+|||||.-.- |...+=+...|+.--...++. .++-.+-..+||.++|+-.||+|...
T Consensus 171 I--nR~~l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasllni~--~deL~eG~~~wi~~CQtyEGG~GG~P---- 242 (423)
T KOG0365|consen 171 I--NREKLYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLLNIP--MDELFEGTLDWIASCQTYEGGFGGEP---- 242 (423)
T ss_pred h--hHHHHHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHhcccccCCcCCCc----
Confidence 1 23578899999999999996322 222222222333323334654 44666678899999999999998642
Q ss_pred ccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCc-CCCCCCCC
Q 010631 411 KKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQM-ENGDYPQE 467 (505)
Q Consensus 411 ~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~-~~G~w~~~ 467 (505)
+.+.+.--|..|+.||...+..+ ...+++-++|..++|. ..|+|...
T Consensus 243 --------~~EAHGGYTFCalAalalLn~~d--~ln~~~Ll~W~~~RQm~~E~GFqGR 290 (423)
T KOG0365|consen 243 --------GVEAHGGYTFCALAALALLNEMD--QLNLEKLLEWAVRRQMRFEGGFQGR 290 (423)
T ss_pred --------cccccCCeeHHHHHHHHHHhhhh--hhCHHHHHHHHHHhhhhhhcccccc
Confidence 22333345666776766666553 2348899999999998 66777643
No 54
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.1e-07 Score=111.94 Aligned_cols=263 Identities=19% Similarity=0.182 Sum_probs=160.6
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHHHhHHhhh
Q 010631 165 TAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSK 244 (505)
Q Consensus 165 Ta~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~ 244 (505)
+-+++..|-..+.-. ...-++|.++|....++.. ..++.+.+...|+- .......+.||++|+.|..+..
T Consensus 948 ni~v~~YL~~t~q~~--~~~k~ka~~~l~~GyqrqL-----~yk~~DgSySaFg~---~~~~~stWLtafvlr~f~~a~~ 1017 (1436)
T KOG1366|consen 948 NIYVLKYLPKTNQLT--PELKRKALKFLEQGYQRQL-----TYKRADGSYSAFGS---SDRSGSTWLTAFVLRVFSQAKE 1017 (1436)
T ss_pred hhhHHHHHhhhhccC--hhHHHHHHHHHHHHHHHHH-----hhhccCCChhhhcC---CCCcccHHHHHHHHHHhhhccC
Confidence 456777777764322 3455778888887766542 12223333344443 2334579999999999986532
Q ss_pred ccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCccccc--CCCcchHHHHHHHHHhhh
Q 010631 245 LSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDY--PCVECTSASIQALTSFKK 322 (505)
Q Consensus 245 ~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~--~~~~~Ta~vl~aL~~~~~ 322 (505)
...++...+.+|++||...|.++|.|..-. +++.+.+... ..+..|+.++..+....
T Consensus 1018 ------~i~id~~~i~~a~~wl~~~Qk~~GsF~e~~--------------~v~~~~~qg~l~~~~~l~~~~l~~~~~~~- 1076 (1436)
T KOG1366|consen 1018 ------YIFIDPNVITQALNWLSQQQKENGSFKEVG--------------EVLHNEMQGGLQDIVALTAIVLSVILDVD- 1076 (1436)
T ss_pred ------ceEecHHHHHHHHHHHHHhhccCceEeccc--------------cccchhhhcCCCCcceeeeEeeeeeccch-
Confidence 135678899999999999999999996421 1122111111 00122333222222111
Q ss_pred hCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCC--
Q 010631 323 LYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSG-- 400 (505)
Q Consensus 323 ~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DG-- 400 (505)
...+.+++.|+.+.-..- ...+|..+.+..||..++.+ ...+++.-|.+.-...|
T Consensus 1077 ----------~~~~~~a~~~~~~~~~~~--------~~~~~~~a~~ayAl~l~~sp-----~a~~~~~~l~~~a~~~~d~ 1133 (1436)
T KOG1366|consen 1077 ----------NASIQKAVAYLEESLDSG--------SMDVYTVAITAYALQLAKSP-----QAAKALAKLKSLARVEGDR 1133 (1436)
T ss_pred ----------hhHHHHHHHHHhhccCcc--------ccccchHHHHHHHHHhccCc-----hHHHHHHhhhhhhcccCCc
Confidence 246899999998866432 12467677778888877654 23333333444333322
Q ss_pred -CCCcCcccccccc-cccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCcccceeccccc
Q 010631 401 -GWGESYLSCQKKV-YSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFNRNCM 478 (505)
Q Consensus 401 -gWge~~~s~~~~~-y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~w~~~~~~g~f~~~~~ 478 (505)
.|........+.. |.+ +...-.+..|+|||+++....+.+ .+...++||.++|+..|+|.+.++
T Consensus 1134 ~~~~~~~~~~~~~~~~~~-q~~s~~VE~tsYaLL~~~~~~~~~----~~~pivrWl~~qr~~~GGf~STQd--------- 1199 (1436)
T KOG1366|consen 1134 RYWWASALKAKNAVKYSP-QARSIDVETTAYALLAYLLLAQVD----YALPIVRWLVEQRNALGGFSSTQD--------- 1199 (1436)
T ss_pred eeeeeccccccCcccCCC-ccchhhccchHHHHHHHHHhcccC----cCchhHhhhhhhhcccCceeehHH---------
Confidence 2444333222211 322 123357889999999988876552 244569999999999999999987
Q ss_pred cccCCchhhHHHHHHHHHHHHhhh
Q 010631 479 ISYSAYRNIFPIWALGEYRCRVLE 502 (505)
Q Consensus 479 ~~y~~y~~~fpl~AL~~y~~~~~~ 502 (505)
++..|.||++|..+...
T Consensus 1200 -------TvvalqaLs~y~~~~~~ 1216 (1436)
T KOG1366|consen 1200 -------TVVALQALSEYAALSHT 1216 (1436)
T ss_pred -------HHHHHHHHHHhhhhccc
Confidence 47999999999887554
No 55
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=5.8e-07 Score=87.43 Aligned_cols=143 Identities=19% Similarity=0.247 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHH
Q 010631 258 RLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIK 337 (505)
Q Consensus 258 ~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ 337 (505)
...+++.||.++|+=||||+.-. . +.++...|..+|.+|+..++.-|+.-.. ...++
T Consensus 175 D~ek~~~yI~~~q~YdgGfg~~p------------g---------~EsHgG~TfCAlAsL~L~~~l~~e~l~~--~~~~e 231 (347)
T KOG0367|consen 175 DKEKLIGYIRSSQRYDGGFGQHP------------G---------GESHGGATFCALASLALMGKLIPEELSN--TSKVE 231 (347)
T ss_pred CHHHHHHHHHHhhccccccccCC------------C---------CCCCcchhHHHHHHHHHHhhhhhhhhcc--ccCHH
Confidence 36789999999999999997421 1 2244567888888888887653321100 12389
Q ss_pred HHHHHHHHhccccCCCcccCC----CCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCC-CCCCcCccccccc
Q 010631 338 RAVKFIEKIQELDGSWYGSWG----VCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPS-GGWGESYLSCQKK 412 (505)
Q Consensus 338 rav~~L~~~Q~~DG~W~g~wg----~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~D-GgWge~~~s~~~~ 412 (505)
|-++|+..+|..+||+.||-. +|| ..|+...|...+.. .--.-++.-+||+++|..- ||+...
T Consensus 232 rlirWli~RQ~~sgGfqGR~NKp~DTCY---aFWigasLklL~~~--~~~d~~~lr~fll~~Q~~~iGGFsK~------- 299 (347)
T KOG0367|consen 232 RLIRWLIQRQVSSGGFQGRTNKPVDTCY---AFWIGASLKLLDAD--WLIDKQVLRKFLLSTQDKLIGGFSKW------- 299 (347)
T ss_pred HHHHHHHHHhhccCCcCCCCCCCchhHH---HHHHHHHHHHccch--HhhhHHHHHHHHHHhhhhhcCcccCC-------
Confidence 999999999999999998742 344 34666666665543 1112235668999999886 997542
Q ss_pred ccccCCCCCCchhHHHHHHHHHHHcCCC
Q 010631 413 VYSNLEGDRSHVVNTAWAMLALIDAGQA 440 (505)
Q Consensus 413 ~y~~~~~~~s~~~~Ta~ALlaL~~ag~~ 440 (505)
+++.++++.|++.+-||...+++
T Consensus 300 -----P~~~pD~~HsylG~~alal~ee~ 322 (347)
T KOG0367|consen 300 -----PEEDPDLLHSYLGLAALALLEEK 322 (347)
T ss_pred -----CccCchHHHHHHHHHHHHHhcCC
Confidence 24578999999999999887665
No 56
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.49 E-value=2.4e-06 Score=79.68 Aligned_cols=227 Identities=21% Similarity=0.248 Sum_probs=135.1
Q ss_pred HHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCc-hhhHHHHHHhHHhhhccccccCCccchHHHHHH
Q 010631 184 TLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPIS-DCTSEGLKASLLLSKLSSAIVGEPIETKRLYDS 262 (505)
Q Consensus 184 ~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~-d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~A 262 (505)
.+.+.++||..+|+.+ ||..|-.. -||+ -+|=.|++.+..+.. +..+.++.
T Consensus 7 ~l~rvi~fi~~Rrhed---------------GGy~f~~~---Lpdti~~TyYAi~i~s~lg~----------evPr~Ekt 58 (274)
T COG1689 7 NLNRVIEFIEKRRHED---------------GGYCFVSQ---LPDTINDTYYAIKIYSLLGH----------EVPRKEKT 58 (274)
T ss_pred hHHHHHHHHHHhhcCC---------------CCeEEecc---CcchhhhhhhhhhhhhhcCC----------cCchHHHH
Confidence 4778899999999875 88877542 3555 678788777655432 23567889
Q ss_pred HHHHHh-cccCCcceeee----------ecccccchhc--ccCccc-ccCCcccccC-------CCcchHHHHHHHHHhh
Q 010631 263 VNVIFS-LQNADGGFATY----------ELMRSYPWLE--VLNPAE-TFGDIVIDYP-------CVECTSASIQALTSFK 321 (505)
Q Consensus 263 v~~Ll~-~Qn~dGgw~~~----------~~~~~~~~l~--~~~~~e-~f~~~~~d~~-------~~~~Ta~vl~aL~~~~ 321 (505)
++||.+ ||...+|++.- +.++++-.+. +.+|++ -|. .+...+ -.+.|-.+..+|...+
T Consensus 59 iefL~d~~qt~~~~~a~~~~~l~~lg~~d~~r~~~~l~~~~~~~~e~Kf~-~~lggs~~f~t~~~Le~ty~~~~~l~~~n 137 (274)
T COG1689 59 IEFLYDQMQTAGVGVAMAIEFLRILGAKDLARNKMLLLFLKYNPLEEKFA-VGLGGSEEFGTATPLEATYWMMSALNMVN 137 (274)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcccccchhhHHHHHhhcCchhHHHh-hhcCceeecCCCchHHHHHHHHHHHHHhC
Confidence 999987 78888888641 1222211110 111221 111 011111 1355666666776665
Q ss_pred hhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCC
Q 010631 322 KLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGG 401 (505)
Q Consensus 322 ~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGg 401 (505)
.. ..+..-+|+++-|+.+|... .+|+... .|-.+.+||...+.. . ....-..|-.+ -.++||
T Consensus 138 ~~-----------~~eE~k~~v~~~~re~~~g~-~YGv~~p-nt~~t~~aly~l~~k-~---~~~~v~~Fe~~-c~~~Gg 199 (274)
T COG1689 138 YE-----------YLEEMKEKVIEFVREFGIGD-AYGVTHP-NTTMTYQALYTLGSK-G---PKEEVRHFELC-CGDWGG 199 (274)
T ss_pred cC-----------chHHHHHHHHHHhhhhcccc-ccccCCc-chHHHHHHHHhhccc-c---chHHHHhHHhc-cccCCC
Confidence 32 23444567888888887653 3454332 244555555544432 1 12223333333 457788
Q ss_pred CCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCcccce
Q 010631 402 WGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGV 472 (505)
Q Consensus 402 Wge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~w~~~~~~g~ 472 (505)
|.+...|+ .+....|.+|+-+|...+... .+.+-++|+++-||+||+|.-.-..|.
T Consensus 200 f~~~P~sy-----------PPYiE~t~ya~r~lelL~~k~----~i~~~~rFI~slqN~nGGFRRS~~~GI 255 (274)
T COG1689 200 FTEVPNSY-----------PPYIEPTFYALRGLELLGGKY----CISDHIRFIRSLQNQNGGFRRSYELGI 255 (274)
T ss_pred cccCCCCC-----------CCccchHHHHHhHHHHHccCc----CchHHHHHHHHhhcCCCCeeeeEeccc
Confidence 87764433 234578999999998877652 266789999999999999987655454
No 57
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.39 E-value=1.8e-05 Score=73.98 Aligned_cols=252 Identities=20% Similarity=0.209 Sum_probs=137.3
Q ss_pred HHHHHHHHhhcc-CCcceeeechhhhh-------hhhheecccCCCCHHHHHHHhhhhhceeeeCCCceeecCCCCChhH
Q 010631 93 LRNAIKHIHYED-ENTRYLCIGPVNKV-------LNMLCCWVEDPNSEAFKLHIPRINDYLWIAEDGMKVQGYNGSQLWD 164 (505)
Q Consensus 93 ~~~~~~~~~~~~-~~~~~~~~~pv~~~-------l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~q~~~~s~vwD 164 (505)
++++.++|+.+. +.+||+...|+-+. +..+-+.+++ -|...+-+++|.+-+. .+.+ -
T Consensus 8 l~rvi~fi~~RrhedGGy~f~~~Lpdti~~TyYAi~i~s~lg~e--vPr~EktiefL~d~~q-t~~~------------~ 72 (274)
T COG1689 8 LNRVIEFIEKRRHEDGGYCFVSQLPDTINDTYYAIKIYSLLGHE--VPRKEKTIEFLYDQMQ-TAGV------------G 72 (274)
T ss_pred HHHHHHHHHHhhcCCCCeEEeccCcchhhhhhhhhhhhhhcCCc--CchHHHHHHHHHHHHH-Hhhh------------H
Confidence 456677776555 55668666664322 2222223333 3567888999887421 1111 1
Q ss_pred HHHHHHHHHhcCCCcc-hHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHHHhHHhh
Q 010631 165 TAFAVQAIISTNLVEE-YGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLS 243 (505)
Q Consensus 165 Ta~a~~AL~~ag~~~~-~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~ 243 (505)
-|.++.+|.-.|..+- ....+. .|+.-....+ .+.... .|.-.|-..+ | ..+|=.+..+|....
T Consensus 73 ~a~~~~~l~~lg~~d~~r~~~~l---~~~~~~~~e~----Kf~~~l----ggs~~f~t~~---~-Le~ty~~~~~l~~~n 137 (274)
T COG1689 73 VAMAIEFLRILGAKDLARNKMLL---LFLKYNPLEE----KFAVGL----GGSEEFGTAT---P-LEATYWMMSALNMVN 137 (274)
T ss_pred HHHHHHHHHHhcccccchhhHHH---HHhhcCchhH----HHhhhc----CceeecCCCc---h-HHHHHHHHHHHHHhC
Confidence 3555666665555431 122222 2333333322 111111 1333333221 2 556666666654321
Q ss_pred hccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhh
Q 010631 244 KLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKL 323 (505)
Q Consensus 244 ~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~ 323 (505)
.+..+..-+|+++.|+.+|++.+|. ++.++ |-...+||-..+..
T Consensus 138 ------------~~~~eE~k~~v~~~~re~~~g~~YG---------------------v~~pn---t~~t~~aly~l~~k 181 (274)
T COG1689 138 ------------YEYLEEMKEKVIEFVREFGIGDAYG---------------------VTHPN---TTMTYQALYTLGSK 181 (274)
T ss_pred ------------cCchHHHHHHHHHHhhhhccccccc---------------------cCCcc---hHHHHHHHHhhccc
Confidence 1234445688999999999887654 34433 44445555544322
Q ss_pred CCCCchhhhHHHHHHHHHHHHHhccccCCCcccCC--CCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCC
Q 010631 324 YPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWG--VCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGG 401 (505)
Q Consensus 324 ~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg--~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGg 401 (505)
.+ ++.-..| ...--.+|+|...-+ .+|+-.|..++.+|...|..+ .+.+-++|+.+.||+|||
T Consensus 182 ~~----------~~~v~~F-e~~c~~~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k~----~i~~~~rFI~slqN~nGG 246 (274)
T COG1689 182 GP----------KEEVRHF-ELCCGDWGGFTEVPNSYPPYIEPTFYALRGLELLGGKY----CISDHIRFIRSLQNQNGG 246 (274)
T ss_pred cc----------hHHHHhH-HhccccCCCcccCCCCCCCccchHHHHHhHHHHHccCc----CchHHHHHHHHhhcCCCC
Confidence 11 2222223 222223455533222 245667999999999887652 456778999999999999
Q ss_pred CCcCcccccccccccCCCCCCchhHHHHHHHHHHH
Q 010631 402 WGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALID 436 (505)
Q Consensus 402 Wge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ 436 (505)
+-.+. +.+-|++..|..|+..|..
T Consensus 247 FRRS~-----------~~GISt~e~tYrAl~~L~~ 270 (274)
T COG1689 247 FRRSY-----------ELGISTFENTYRALASLAS 270 (274)
T ss_pred eeeeE-----------eccccchHHHHHHHHHHHH
Confidence 96652 2468999999999887754
No 58
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=98.38 E-value=1.1e-06 Score=87.13 Aligned_cols=150 Identities=13% Similarity=0.227 Sum_probs=88.6
Q ss_pred cchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCC------ccch---HHHHHHHHHHcC--
Q 010631 308 ECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVC------FTYG---TWFGVKGLVAAG-- 376 (505)
Q Consensus 308 ~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~------~~y~---T~~al~aL~~~G-- 376 (505)
+.|...|..|+.+.... ..+.+.+++.||++||++.|-|+|||+-.|... .+|. ..-+|.-|..+.
T Consensus 39 ~aT~~ei~fLa~~y~~t---~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~ 115 (289)
T PF09492_consen 39 DATTTEIRFLARVYQAT---KDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEG 115 (289)
T ss_dssp GTTHHHHHHHHHHHHHC---G-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHHHh---CChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhh
Confidence 56888899999876643 345678999999999999999999999766321 2222 334455454432
Q ss_pred CC-C---------CCcHHHHHHHHHHHhccCCC-C---CCCcCcccc-----cccccccCCCCCC-chhHHHHHHHHHHH
Q 010631 377 MN-Y---------SNSSSIRKACEFLLSKQRPS-G---GWGESYLSC-----QKKVYSNLEGDRS-HVVNTAWAMLALID 436 (505)
Q Consensus 377 ~~-~---------~~~~~i~ra~~~L~~~Q~~D-G---gWge~~~s~-----~~~~y~~~~~~~s-~~~~Ta~ALlaL~~ 436 (505)
.. + ....++.||+++|+..|-.. | +|.--.... .-..|-+ .| ....|+-.+..||.
T Consensus 116 ~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~----pSls~~ES~~iv~~LM~ 191 (289)
T PF09492_consen 116 KGDFAFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEP----PSLSGSESVGIVRFLMS 191 (289)
T ss_dssp -TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT------SSEECCCHHHHHHHHCT
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCC----cccccccHHHHHHHHhc
Confidence 21 1 12468899999999999833 3 586533221 1122321 12 22456777788877
Q ss_pred cCCCCCCc---HHHHHHHHHHHhcCcCCCCCCC
Q 010631 437 AGQAETDP---TPLHRAARYLINSQMENGDYPQ 466 (505)
Q Consensus 437 ag~~~~d~---~~i~rgv~~L~~~Q~~~G~w~~ 466 (505)
...+ ++ ++|+.|++||.+...++..|..
T Consensus 192 ~~~p--s~~v~~aI~~AvaWl~~~ki~g~~~~~ 222 (289)
T PF09492_consen 192 LPNP--SPEVLAAIEAAVAWLESVKIPGKRWEK 222 (289)
T ss_dssp SSS----HHHHHHHHHHHHHHCCTSEEEEEE-G
T ss_pred CCCC--CHHHHHHHHHHHHHHHhCcCCCceeEe
Confidence 6544 24 3799999999998877766544
No 59
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=98.20 E-value=3.7e-06 Score=83.43 Aligned_cols=158 Identities=15% Similarity=0.253 Sum_probs=89.8
Q ss_pred CchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCC
Q 010631 228 ISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCV 307 (505)
Q Consensus 228 d~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~ 307 (505)
|-+.|...|.-|+.+.... +.+...+++.||++||++.|.++|||+-+-+.+.. +..+ +..+ =
T Consensus 37 DN~aT~~ei~fLa~~y~~t----~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~-Y~~~---------ITfN---D 99 (289)
T PF09492_consen 37 DNDATTTEIRFLARVYQAT----KDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGG-YHDH---------ITFN---D 99 (289)
T ss_dssp GGGTTHHHHHHHHHHHHHC----G-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SG-GGGS---------EE-G---G
T ss_pred cChhHHHHHHHHHHHHHHh----CChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCC-CCCc---------eEEc---c
Confidence 4456888887776654321 34556799999999999999999999865332211 2111 1111 1
Q ss_pred cchHHHHHHHHHhhhhCCCC------chhhhHHHHHHHHHHHHHhccc-cC---CCcc---------cCCCCc------c
Q 010631 308 ECTSASIQALTSFKKLYPGH------WQEDVDHCIKRAVKFIEKIQEL-DG---SWYG---------SWGVCF------T 362 (505)
Q Consensus 308 ~~Ta~vl~aL~~~~~~~~~~------~~~~i~~~i~rav~~L~~~Q~~-DG---~W~g---------~wg~~~------~ 362 (505)
+....+|..|.......+++ .+..+..++.||+++|++.|-. +| .|.. .|+..| .
T Consensus 100 dam~~vl~lL~~v~~~~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~ 179 (289)
T PF09492_consen 100 DAMVNVLELLRDVAEGKGDFAFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSG 179 (289)
T ss_dssp GHHHHHHHHHHHHHCT-TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT--SSEEC
T ss_pred HHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCCccccc
Confidence 45667788887765443332 2345778999999999999973 33 3421 122222 1
Q ss_pred chHHHHHHHHHHcCCCC-CCcHHHHHHHHHHHhccCCCCCC
Q 010631 363 YGTWFGVKGLVAAGMNY-SNSSSIRKACEFLLSKQRPSGGW 402 (505)
Q Consensus 363 y~T~~al~aL~~~G~~~-~~~~~i~ra~~~L~~~Q~~DGgW 402 (505)
.-|+-++.-|+..-.+. .--.+|..|++||.++..++.-|
T Consensus 180 ~ES~~iv~~LM~~~~ps~~v~~aI~~AvaWl~~~ki~g~~~ 220 (289)
T PF09492_consen 180 SESVGIVRFLMSLPNPSPEVLAAIEAAVAWLESVKIPGKRW 220 (289)
T ss_dssp CCHHHHHHHHCTSSS--HHHHHHHHHHHHHHCCTSEEEEEE
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhCcCCCcee
Confidence 12666777676554320 11245667999999987766554
No 60
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=98.15 E-value=0.00042 Score=77.24 Aligned_cols=266 Identities=14% Similarity=0.192 Sum_probs=144.5
Q ss_pred CChh--HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccc-cccCCCCCCCCCcccCCCCCCchhhHHHH
Q 010631 160 SQLW--DTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDF-WYRHISKGAWPFSTADHGWPISDCTSEGL 236 (505)
Q Consensus 160 s~vw--DTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~-~~~~~~~GgW~f~~~~~~~pd~d~Ta~al 236 (505)
.-+| |++++++||..+|.+ +..++.++||.+.|..+ |.|-. ++.+.....|.. . .-.|.|+.+|
T Consensus 293 ~y~W~RD~~~~a~Al~~~G~~----~~a~~~l~~l~~~q~~~---G~~~~~~~~dG~~~~~~~-----~-~Q~D~~g~~l 359 (616)
T TIGR01577 293 AYCWGRDASYIATALDRAGYH----DRVDRFFRWAMQTQSRD---GSWQQRYYLNGRLAPLQW-----G-LQIDETGSIL 359 (616)
T ss_pred ceeccccHHHHHHHHHHCCCH----HHHHHHHHHHHHhhCcC---CCcceEEecCCCCCCCCC-----C-ccccchhHHH
Confidence 3466 899999999999974 56888899999999986 66532 233322221211 1 3467799888
Q ss_pred HHhHHhhhccccccCCcc---chHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHH
Q 010631 237 KASLLLSKLSSAIVGEPI---ETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSAS 313 (505)
Q Consensus 237 ~aL~~~~~~~~~~~g~~~---~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~v 313 (505)
.++........ .... .-+.++++++|+.....+++.-..+ .-|-+. .| .++...+.+
T Consensus 360 ~al~~y~~~t~---d~~~~~~~~~~v~~a~~fl~~~~~~~l~~~~~-----~lWEer------~G------~~~~t~a~~ 419 (616)
T TIGR01577 360 WAMDQHYRLTN---DRAFLEEIWESVQKAAQYLILFIDPETPLPCR-----DLWEER------EG------VFTYTASAV 419 (616)
T ss_pred HHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC-----ccceec------CC------ccCccHHHH
Confidence 87743322110 0111 1256899999999966432111000 011110 01 123445666
Q ss_pred HHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHh-----ccccCCCcccC-CC---CccchHHHHHHHHH-HcCCCCCCcH
Q 010631 314 IQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKI-----QELDGSWYGSW-GV---CFTYGTWFGVKGLV-AAGMNYSNSS 383 (505)
Q Consensus 314 l~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~-----Q~~DG~W~g~w-g~---~~~y~T~~al~aL~-~~G~~~~~~~ 383 (505)
..||..+.+.......++.....++..+.|++. -.++++++-+. +. ..+-.. .+.+|. ..|.-...++
T Consensus 420 ~aAL~~aa~lA~~lGd~~~a~~~~~~Ad~ik~~i~~~~w~~~~g~F~~~~~~~~~~~~vDa--SlL~l~~~~g~l~~~Dp 497 (616)
T TIGR01577 420 YGGLDAAAAVADKLGEKRLAQNWKKAAEFIKRAVEERFWLPERQVFAKGIKLMVLDKTIDI--SILGISVPFNLIAPDDE 497 (616)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeecCCCCCCcccH--HHHhHHHhcCCCCCCCh
Confidence 666655432211000011112233444444432 24555555321 10 111112 244554 3675546778
Q ss_pred HHHHHHHHHHhccCC--CCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCc---------HHHHHHHH
Q 010631 384 SIRKACEFLLSKQRP--SGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDP---------TPLHRAAR 452 (505)
Q Consensus 384 ~i~ra~~~L~~~Q~~--DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~---------~~i~rgv~ 452 (505)
.+...++-+.+.-.. +|||.. |+...|. ++.+-...|.|...++..+|....+. +..++-++
T Consensus 498 r~v~Tv~~I~~~L~~~~~ggi~R----Y~~D~y~---~g~~w~i~T~wla~~~~~~g~~~~~~~~~~~~~~~~~A~~ll~ 570 (616)
T TIGR01577 498 RMVKMAEAIEKHLTSPIVGGIKR----YENDPYV---GGNPWILTTLWLSQLYIKQGRILKALNHNGADIYLQKSKKLLK 570 (616)
T ss_pred HHHHHHHHHHHHhcccCCCeeeC----CCCCCCC---CCCcHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHH
Confidence 887766666654332 567742 2222333 23455688999999999888653111 12556788
Q ss_pred HHHhcCcCCCCCCCC
Q 010631 453 YLINSQMENGDYPQE 467 (505)
Q Consensus 453 ~L~~~Q~~~G~w~~~ 467 (505)
|++++.++.|-++++
T Consensus 571 ~~~~~~~~~Gll~Eq 585 (616)
T TIGR01577 571 WVMDHRTDLGLLPEQ 585 (616)
T ss_pred HHHhcCCCCCCCccc
Confidence 999999999999986
No 61
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=98.13 E-value=5.7e-06 Score=58.78 Aligned_cols=43 Identities=40% Similarity=0.526 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcC
Q 010631 384 SIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAG 438 (505)
Q Consensus 384 ~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag 438 (505)
.++++++||+++|++||||+... +..+++..|.||+.+|...|
T Consensus 2 d~~~~~~~l~~~Q~~dGGf~~~~------------~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 2 DVEKLIRFLLSCQNPDGGFGGRP------------GGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp HHHHHHHHHHHTBBTTSSBBSST------------TSSBBHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHCCCCCCCCCCC------------CCCCChHHHHHHHHHHHHcC
Confidence 46899999999999999998752 45789999999999997654
No 62
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=97.86 E-value=2.6e-05 Score=55.31 Aligned_cols=41 Identities=24% Similarity=0.333 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhccccCCCcccCCCC-ccchHHHHHHHHHHcC
Q 010631 336 IKRAVKFIEKIQELDGSWYGSWGVC-FTYGTWFGVKGLVAAG 376 (505)
Q Consensus 336 i~rav~~L~~~Q~~DG~W~g~wg~~-~~y~T~~al~aL~~~G 376 (505)
++++++||.+.|.+||||.++++.. .++.|++++.+|...|
T Consensus 3 ~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 3 VEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp HHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 6899999999999999999988764 7788999999998765
No 63
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=97.60 E-value=0.0023 Score=65.77 Aligned_cols=219 Identities=14% Similarity=0.133 Sum_probs=126.3
Q ss_pred ccchHHHHHHHHHHHhccc--CCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchh
Q 010631 253 PIETKRLYDSVNVIFSLQN--ADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQE 330 (505)
Q Consensus 253 ~~~~~~i~~Av~~Ll~~Qn--~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~ 330 (505)
+...+.+.++.+|++..+. ++|++...... ... ..+|.-..++..|..++....+ .+
T Consensus 86 ~~y~~~~~~~a~~~l~~~~~~~~G~~~~~~~~---------------~~~----~wiD~~~M~~p~l~~~~~~tgd--~~ 144 (336)
T PF07470_consen 86 EKYKDAAIQAADWLLARRPRTSDGGFWHNRPY---------------PNQ----VWIDGMYMNLPFLAWAGKLTGD--PK 144 (336)
T ss_dssp HHHHHHHHHHHHHHHHTSCBECTGCBECTTTS---------------TTE----EETTHHHHHHHHHHHHHHHHTG--HH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCccccCCCC---------------CCc----eeeccccccHHHHHHHHHHHCC--cH
Confidence 4456788999998886555 48998531111 110 1144455577777777655322 11
Q ss_pred hhHHHHHHHHHHHHHhccc-cCCCcccC--------C-CCccchHHHHHHHHHHcCC--C--C----CCcHHHHHHHHHH
Q 010631 331 DVDHCIKRAVKFIEKIQEL-DGSWYGSW--------G-VCFTYGTWFGVKGLVAAGM--N--Y----SNSSSIRKACEFL 392 (505)
Q Consensus 331 ~i~~~i~rav~~L~~~Q~~-DG~W~g~w--------g-~~~~y~T~~al~aL~~~G~--~--~----~~~~~i~ra~~~L 392 (505)
-.+.+++....+.....++ +|-|.-.| . .+..=|.+|++.||..+=. + + .....+++.++.|
T Consensus 145 ~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~~~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l 224 (336)
T PF07470_consen 145 YLDEAVRQFRLTRKYLYDPETGLYYHGYTYQGYADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADAL 224 (336)
T ss_dssp HHHHHHHHHHHHHHHHB-TTTSSBESEEETTSSSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCceeeccCCCCCcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHH
Confidence 2334555555555555544 67664221 1 2355577888888875311 0 0 1123455677888
Q ss_pred HhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHH---cCCCCC--CcHHHHHHHHHHHhc-CcCCCC--C
Q 010631 393 LSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALID---AGQAET--DPTPLHRAARYLINS-QMENGD--Y 464 (505)
Q Consensus 393 ~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~---ag~~~~--d~~~i~rgv~~L~~~-Q~~~G~--w 464 (505)
...|.+||.|........ ++.....+.||....||.. .|..+. ....++|+++.|+++ -++||. +
T Consensus 225 ~~~q~~~G~w~~~~~~~~-------~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a~~~l~~~~~~~dG~~~~ 297 (336)
T PF07470_consen 225 ARYQDEDGLWYQDLDDPD-------PGNYRETSATAMFAYGLLRGIRLGLLDPEEYRPAAEKALEALLSNAIDPDGKLGL 297 (336)
T ss_dssp HTTSTTTSBEBSBTTTTT-------TTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHCEB-TTSSSBB
T ss_pred HhcCCCCCCcceecCCCC-------CCCcccHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhCccCCCCCeEE
Confidence 999999999976432111 0123456778777777743 454421 113689999999999 788888 6
Q ss_pred CCCcccceec---cccccccCCchhhHHHHHHHHHHHH
Q 010631 465 PQEEIMGVFN---RNCMISYSAYRNIFPIWALGEYRCR 499 (505)
Q Consensus 465 ~~~~~~g~f~---~~~~~~y~~y~~~fpl~AL~~y~~~ 499 (505)
.......... ..-......|-..+-|+||.+|.+.
T Consensus 298 ~~~~~~~~~~~Y~~~~~~~~~~~G~g~fl~A~~e~~r~ 335 (336)
T PF07470_consen 298 KGVCGGTPVGGYQGRDYNVNDPYGDGYFLLALAEYERL 335 (336)
T ss_dssp TCEBETTTS-SHHTEEEECCSHHHHHHHHHHHHHHHCG
T ss_pred eeeEeecCCCCCCCCCCCCCcCcHHHHHHHHHHHHHHh
Confidence 5543222111 1122334468899999999999775
No 64
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=97.56 E-value=0.00073 Score=68.32 Aligned_cols=104 Identities=22% Similarity=0.255 Sum_probs=77.0
Q ss_pred CcchHHHHHHHHHhhhhCCC--CchhhhHHHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHHHHHHcCCCCCC-cH
Q 010631 307 VECTSASIQALTSFKKLYPG--HWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSN-SS 383 (505)
Q Consensus 307 ~~~Ta~vl~aL~~~~~~~~~--~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~-~~ 383 (505)
+|.+|.++.||.-..+..+. ....+|+.+|++.++.|.+.|.+||.++ .+|.|+.|++||...+..+.. ..
T Consensus 186 VDT~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~G------NiySTglAmQAL~~~~~~~~~~~w 259 (326)
T PF01122_consen 186 VDTGAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPNGLFG------NIYSTGLAMQALSVSPSPPSESEW 259 (326)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TTS-BS------STTTHHHHHHHHTT-SS-SSHHHH
T ss_pred ccHHHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCCCccc------chhhHHHHHHHHhcCCCCCcchhh
Confidence 67899999999887764332 1235788899999999999999999986 589999999999999886322 36
Q ss_pred HHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHH
Q 010631 384 SIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALID 436 (505)
Q Consensus 384 ~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ 436 (505)
...++.+.|+... ++|.++ ++..+|-.|-+|.-
T Consensus 260 ~C~k~~~~ll~~i-~~G~F~-------------------nP~a~aQiLPaL~g 292 (326)
T PF01122_consen 260 NCQKALDALLKEI-SQGAFQ-------------------NPMAIAQILPALNG 292 (326)
T ss_dssp HHHHHHHHHHHHH-TTTTT--------------------SHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh-hcCCCC-------------------CHHHHHHHHHHHcC
Confidence 6788999999864 577763 35677777777754
No 65
>PLN02592 ent-copalyl diphosphate synthase
Probab=97.48 E-value=0.0037 Score=70.59 Aligned_cols=91 Identities=14% Similarity=0.257 Sum_probs=63.7
Q ss_pred HHHHHHHHHhccc-cCCCcccCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCC-CCCcCccccccccc
Q 010631 337 KRAVKFIEKIQEL-DGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSG-GWGESYLSCQKKVY 414 (505)
Q Consensus 337 ~rav~~L~~~Q~~-DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DG-gWge~~~s~~~~~y 414 (505)
.++++||.+.... +|+-+.-+... .+...+++-.|...|+.+...+.|+..++.+.+.-...| ||+..
T Consensus 285 ~~cl~YL~~~~~k~~GgVP~vyP~d-~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~--------- 354 (800)
T PLN02592 285 ENCLEYLNKAVQRFNGGVPNVYPVD-LFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARN--------- 354 (800)
T ss_pred hHHHHHHHHHHHHcCCCCCCCCCCc-HHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccC---------
Confidence 6788888885544 45555444432 345688899999999998888999999999987322223 45211
Q ss_pred ccCCCCCCchhHHHHHHHHHHHcCCCC
Q 010631 415 SNLEGDRSHVVNTAWAMLALIDAGQAE 441 (505)
Q Consensus 415 ~~~~~~~s~~~~Ta~ALlaL~~ag~~~ 441 (505)
....+...||.++..|...|...
T Consensus 355 ----~~~~Dld~TALaFRLLRqhGy~V 377 (800)
T PLN02592 355 ----SHVHDIDDTAMGFRLLRLHGHQV 377 (800)
T ss_pred ----CCcCCHHHHHHHHHHHHHcCCCC
Confidence 01357889999999999998864
No 66
>PLN02279 ent-kaur-16-ene synthase
Probab=97.07 E-value=0.012 Score=66.70 Aligned_cols=86 Identities=13% Similarity=0.082 Sum_probs=57.2
Q ss_pred HHHHHHHHHhccc-cCCCcccCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccccccccc
Q 010631 337 KRAVKFIEKIQEL-DGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYS 415 (505)
Q Consensus 337 ~rav~~L~~~Q~~-DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~ 415 (505)
.++++||.+.+.. +|+-+..+.+. .+...+++-.|...|+.+...+.|+..++.+.+.-. +|+ +
T Consensus 245 ~~~~~yL~~~~~~~~g~vP~~yp~~-~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~-~~~--~----------- 309 (784)
T PLN02279 245 AGCLRYLRSLLQKFGNAVPTVYPLD-QYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWL-QGE--E----------- 309 (784)
T ss_pred hHHHHHHHHHHHhcCCCCCCCCccc-HHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhc-ccc--c-----------
Confidence 6888999886654 45555544444 366789999999999997778999999988875322 121 1
Q ss_pred cCCCCCCchhHHHHHHHHHHHcCCC
Q 010631 416 NLEGDRSHVVNTAWAMLALIDAGQA 440 (505)
Q Consensus 416 ~~~~~~s~~~~Ta~ALlaL~~ag~~ 440 (505)
+...+...||.+...|...|+.
T Consensus 310 ---~~~~Dl~~tAl~FRLLR~hGy~ 331 (784)
T PLN02279 310 ---EIFLDLATCALAFRILRLNGYD 331 (784)
T ss_pred ---CCCCCHHHHHHHHHHHHHcCCC
Confidence 1123555666666666665554
No 67
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=96.98 E-value=0.011 Score=60.86 Aligned_cols=229 Identities=17% Similarity=0.150 Sum_probs=124.8
Q ss_pred CcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCc-cch
Q 010631 178 VEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEP-IET 256 (505)
Q Consensus 178 ~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~-~~~ 256 (505)
.+++.+.+.++.+|++..+.+. .. |+......+...--+|.--+++..|..+.+.. |++ ..+
T Consensus 85 d~~y~~~~~~~a~~~l~~~~~~-~~------------G~~~~~~~~~~~~wiD~~~M~~p~l~~~~~~t----gd~~~~~ 147 (336)
T PF07470_consen 85 DEKYKDAAIQAADWLLARRPRT-SD------------GGFWHNRPYPNQVWIDGMYMNLPFLAWAGKLT----GDPKYLD 147 (336)
T ss_dssp THHHHHHHHHHHHHHHHTSCBE-CT------------GCBECTTTSTTEEETTHHHHHHHHHHHHHHHH----TGHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCC-CC------------CccccCCCCCCceeeccccccHHHHHHHHHHH----CCcHHHH
Confidence 4557888999999988877652 11 44322222222223565556666666554432 221 223
Q ss_pred HHHHHHHHHHHhcccC-Ccceee-eecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCC--chhhh
Q 010631 257 KRLYDSVNVIFSLQNA-DGGFAT-YELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGH--WQEDV 332 (505)
Q Consensus 257 ~~i~~Av~~Ll~~Qn~-dGgw~~-~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~--~~~~i 332 (505)
+++..+..+...+.++ +|-|-- +....... .++ .--.-..+-++.+|...-+..|.. ..+.+
T Consensus 148 ~a~~q~~~~~~~~~d~~tGl~~h~~~~~~~~~----------~s~----~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~ 213 (336)
T PF07470_consen 148 EAVRQFRLTRKYLYDPETGLYYHGYTYQGYAD----------WSD----SFWSRGNGWAIYGLAEVLEYLPEDHPERDEL 213 (336)
T ss_dssp HHHHHHHHHHHHHB-TTTSSBESEEETTSSST----------TST------BHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCceeeccCCCCCcC----------ccc----ccCcchhhHHHHHHHHHHHHhcchhhhHHHH
Confidence 4444444555555554 555521 11110000 000 001224566677776654433321 12345
Q ss_pred HHHHHHHHHHHHHhccccCCCcccCC--C----CccchHHHHHHHHHH---cCCCC--CCcHHHHHHHHHHHhc-cCCCC
Q 010631 333 DHCIKRAVKFIEKIQELDGSWYGSWG--V----CFTYGTWFGVKGLVA---AGMNY--SNSSSIRKACEFLLSK-QRPSG 400 (505)
Q Consensus 333 ~~~i~rav~~L~~~Q~~DG~W~g~wg--~----~~~y~T~~al~aL~~---~G~~~--~~~~~i~ra~~~L~~~-Q~~DG 400 (505)
....++.++.|.+.|.+||.|+-... . ..+.+|+.+..||.. .|... ...+.++|+.+.|++. -++||
T Consensus 214 ~~~~~~~~~~l~~~q~~~G~w~~~~~~~~~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a~~~l~~~~~~~dG 293 (336)
T PF07470_consen 214 LEIAKKLADALARYQDEDGLWYQDLDDPDPGNYRETSATAMFAYGLLRGIRLGLLDPEEYRPAAEKALEALLSNAIDPDG 293 (336)
T ss_dssp HHHHHHHHHHHHTTSTTTSBEBSBTTTTTTTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHCEB-TTS
T ss_pred HHHHHHHHHHHHhcCCCCCCcceecCCCCCCCcccHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhCccCCCC
Confidence 66778888999999999999974221 1 234578888888843 44431 2346788899999999 78888
Q ss_pred C--CCcCcccccccccccCCCCCCchhHHHHHHHHHHHc
Q 010631 401 G--WGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDA 437 (505)
Q Consensus 401 g--Wge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~a 437 (505)
. +...+...+-..|.+.+.....++..++.|+|+.+.
T Consensus 294 ~~~~~~~~~~~~~~~Y~~~~~~~~~~~G~g~fl~A~~e~ 332 (336)
T PF07470_consen 294 KLGLKGVCGGTPVGGYQGRDYNVNDPYGDGYFLLALAEY 332 (336)
T ss_dssp SSBBTCEBETTTS-SHHTEEEECCSHHHHHHHHHHHHHH
T ss_pred CeEEeeeEeecCCCCCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 7 655554443112321111234578899999998765
No 68
>PLN02592 ent-copalyl diphosphate synthase
Probab=96.96 E-value=0.0027 Score=71.67 Aligned_cols=84 Identities=20% Similarity=0.370 Sum_probs=59.6
Q ss_pred CCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcC
Q 010631 359 VCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAG 438 (505)
Q Consensus 359 ~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag 438 (505)
.+..|.|+|+ ||...-.. ...+.....++||++.|.+|||||.... +. ....+..|.-+++||...+
T Consensus 94 S~S~YDTAWV--AmVp~~~g-~~~p~FP~~~~wIl~nQ~~DGsWG~~~~------~~----~~D~ll~TLAcvlAL~~w~ 160 (800)
T PLN02592 94 SISAYDTAWV--ALVEDING-SGTPQFPSSLQWIANNQLSDGSWGDAYL------FS----AHDRLINTLACVVALKSWN 160 (800)
T ss_pred CCcHHHhHHH--hhcccCCC-CCCCCCHHHHHHHHHccCCCCCCCCCCC------cc----hHHHHHhHHHHHHHHHHhh
Confidence 4678999995 44432111 2346677899999999999999997411 00 1234689999999999876
Q ss_pred CCCCCcHHHHHHHHHHHhcC
Q 010631 439 QAETDPTPLHRAARYLINSQ 458 (505)
Q Consensus 439 ~~~~d~~~i~rgv~~L~~~Q 458 (505)
.. +..|+||+.||.++-
T Consensus 161 ~~---~~~i~rGl~fi~~nl 177 (800)
T PLN02592 161 LH---PEKCEKGMSFFRENI 177 (800)
T ss_pred cc---HHHHHHHHHHHHHHH
Confidence 54 456999999998753
No 69
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=96.94 E-value=0.013 Score=59.45 Aligned_cols=147 Identities=17% Similarity=0.159 Sum_probs=89.3
Q ss_pred CCChhHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHHH
Q 010631 159 GSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKA 238 (505)
Q Consensus 159 ~s~vwDTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~a 238 (505)
-+.-+.=++.++||+-.+- +-....+.+++...+. + .. .|++ -+||.+|+|++|
T Consensus 142 ~TnyYq~sL~vLALCv~~~----~~~~~~v~kL~~~~~~-~-~~-----------~~~~---------~sVDT~AmA~LA 195 (326)
T PF01122_consen 142 LTNYYQYSLGVLALCVHNK----RVSLSVVAKLLKAENH-N-FY-----------HGSQ---------FSVDTGAMAVLA 195 (326)
T ss_dssp SSGHHHHHHHHHHHHHTTH----HHHHHHHHHHHHHHHS-S-TS-----------S-ST---------CHHHHHHHHHHH
T ss_pred CCcccchHHHHHHHHccCC----CcCHHHHHHHHHHHHh-h-cc-----------cCCC---------CCccHHHHHHHH
Confidence 3556899999999998763 1223333344444332 1 00 0221 269999999999
Q ss_pred hHHhhhccccccCC---ccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHH
Q 010631 239 SLLLSKLSSAIVGE---PIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQ 315 (505)
Q Consensus 239 L~~~~~~~~~~~g~---~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~ 315 (505)
|.-+.+... .|. ..-...+++.++.|++.|.+||-|+ + ++.|+.+++
T Consensus 196 LtCv~~~~~--~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~G---------------------N-------iySTglAmQ 245 (326)
T PF01122_consen 196 LTCVKNSNP--NGPELRRRIQQAIRSLVEKILSQQKPNGLFG---------------------N-------IYSTGLAMQ 245 (326)
T ss_dssp HHHHHTTTS--TTGGGHHHHHHHHHHHHHHHHHTB-TTS-BS---------------------S-------TTTHHHHHH
T ss_pred HHHHhccCc--CcHhHHHHHHHHHHHHHHHHHHhcCCCCccc---------------------c-------hhhHHHHHH
Confidence 976654321 110 1123567777788899999999985 1 457999999
Q ss_pred HHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHHHHH
Q 010631 316 ALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLV 373 (505)
Q Consensus 316 aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~ 373 (505)
||...... +. +-+-...++++.|.+.. ++|.|.. .-.++.+|-+|.
T Consensus 246 AL~~~~~~-~~----~~~w~C~k~~~~ll~~i-~~G~F~n------P~a~aQiLPaL~ 291 (326)
T PF01122_consen 246 ALSVSPSP-PS----ESEWNCQKALDALLKEI-SQGAFQN------PMAIAQILPALN 291 (326)
T ss_dssp HHTT-SS--SS----HHHHHHHHHHHHHHHHH-TTTTT-S------HHHHHHHHHHHT
T ss_pred HHhcCCCC-Cc----chhhHHHHHHHHHHHHh-hcCCCCC------HHHHHHHHHHHc
Confidence 99987653 21 11346899999998864 5998852 224566666664
No 70
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=96.65 E-value=0.24 Score=51.59 Aligned_cols=101 Identities=17% Similarity=0.204 Sum_probs=64.6
Q ss_pred CCChhHHHHHHHHHHhcCC---CcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCC-----CCCch
Q 010631 159 GSQLWDTAFAVQAIISTNL---VEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHG-----WPISD 230 (505)
Q Consensus 159 ~s~vwDTa~a~~AL~~ag~---~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~-----~pd~d 230 (505)
...+|.+|+++.+++.+.. .++..+..+++++||.+.-... . .|||-+....++ -++..
T Consensus 49 ~k~~~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~--~-----------~Gg~~~~~~~~g~~~~~~~~l~ 115 (384)
T cd00249 49 DRRLWLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDP--D-----------HGGWYFALDQDGRPVDATKDLY 115 (384)
T ss_pred CCeEEEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCC--C-----------CCCEEEEEcCCCCCcccccchH
Confidence 4568899999999997522 3445678889999999864431 1 144433332111 13578
Q ss_pred hhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhccc-CCcce
Q 010631 231 CTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQN-ADGGF 276 (505)
Q Consensus 231 ~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn-~dGgw 276 (505)
+-++++.|+..+.+.. +++...+...+.++++.+..- ++|++
T Consensus 116 ~~a~~l~ala~~~~at----~d~~~l~~A~~~~~~l~~~~~~~~g~~ 158 (384)
T cd00249 116 SHAFALLAAAQAAKVG----GDPEARALAEETIDLLERRFWEDHPGA 158 (384)
T ss_pred HHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 8899999988765532 333345667777888877653 45665
No 71
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.021 Score=68.37 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=43.6
Q ss_pred CcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHHHHHHcC
Q 010631 307 VECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAG 376 (505)
Q Consensus 307 ~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~~~G 376 (505)
++.|+++|.++....+.. .+--.++||.++++..|||.. +..|..++.||....
T Consensus 1158 VE~tsYaLL~~~~~~~~~----------~~~pivrWl~~qr~~~GGf~S------TQdTvvalqaLs~y~ 1211 (1436)
T KOG1366|consen 1158 VETTAYALLAYLLLAQVD----------YALPIVRWLVEQRNALGGFSS------TQDTVVALQALSEYA 1211 (1436)
T ss_pred ccchHHHHHHHHHhcccC----------cCchhHhhhhhhhcccCceee------hHHHHHHHHHHHHhh
Confidence 689999999888766431 345568999999999999974 778999999998764
No 72
>PLN02279 ent-kaur-16-ene synthase
Probab=96.39 E-value=0.0046 Score=70.03 Aligned_cols=85 Identities=16% Similarity=0.248 Sum_probs=59.0
Q ss_pred CCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcC
Q 010631 359 VCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAG 438 (505)
Q Consensus 359 ~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag 438 (505)
.+..|.|+|+. |...-.. ...+.....++||++.|.+||+||....+. +. ..-.+.+|.-+++||...+
T Consensus 52 s~s~YDTAWva--mv~~~~~-~~~p~Fp~~~~wil~nQ~~dGsWg~~~~~~----~~----~~D~ll~TlAcvlAL~~w~ 120 (784)
T PLN02279 52 SVSSYDTAWVA--MVPSPNS-QQAPLFPECVKWLLENQLEDGSWGLPHDHP----LL----VKDALSSTLASILALKKWG 120 (784)
T ss_pred CCchhhhHHHH--hcccCCC-CCCCCChHHHHHHHhcCCCCCCCCCCCCCc----ch----hHHhhHHHHHHHHHHHHHh
Confidence 45789999984 4432111 345677789999999999999999641100 00 0123578999999999887
Q ss_pred CCCCCcHHHHHHHHHHHhc
Q 010631 439 QAETDPTPLHRAARYLINS 457 (505)
Q Consensus 439 ~~~~d~~~i~rgv~~L~~~ 457 (505)
.. +..+++|+.|+.+.
T Consensus 121 ~~---~~~~~~gl~fi~~n 136 (784)
T PLN02279 121 VG---EEQINKGLQFIELN 136 (784)
T ss_pred cC---cccchhhHHHHHHH
Confidence 64 33489999998864
No 73
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=96.15 E-value=1 Score=50.34 Aligned_cols=289 Identities=14% Similarity=0.050 Sum_probs=146.6
Q ss_pred hHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccc-cccCCCCCCCCCcccCCCCCCchhhHHHHHHhHH
Q 010631 163 WDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDF-WYRHISKGAWPFSTADHGWPISDCTSEGLKASLL 241 (505)
Q Consensus 163 wDTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~-~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL~~ 241 (505)
-|.+++++||..+|. .+..+++.+||.+.|..+ |.|-. +..+..+ .|. + --.|.|++.+.++..
T Consensus 298 RD~a~~a~AL~~~G~----~~~a~~~~~~l~~~~~~~---G~~lq~y~vdG~~-~~~------~-iQlD~~g~~i~~~~~ 362 (648)
T TIGR01535 298 RDLYQVANAFLAAGD----VDSALRSLDYLAKVQQDN---GMFPQNSWVDGKP-YWT------G-IQLDETAFPILLAYR 362 (648)
T ss_pred hhHHHHHHHHHHCCC----HHHHHHHHHHHHHHhccC---CCcCceeccCCCC-CCC------C-ccccHHHHHHHHHHH
Confidence 389999999999996 456889999999999976 56522 2222221 121 1 237999999988765
Q ss_pred hhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCccccc-CCCcchHHHHHHHHHh
Q 010631 242 LSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDY-PCVECTSASIQALTSF 320 (505)
Q Consensus 242 ~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~-~~~~~Ta~vl~aL~~~ 320 (505)
+.+. +.....+.++++++||.+. |..- .++.|.... ..+.+.+.|+.||...
T Consensus 363 l~~~-----~~~~~~~~vk~aadfl~~~------~p~p----------------~~d~WEer~g~~~~T~a~v~aaL~~A 415 (648)
T TIGR01535 363 LHRY-----DHAFYDKMLKPAADFIVKN------GPKT----------------GQERWEEIGGYSPSTLAAEIAGLTAA 415 (648)
T ss_pred HHHc-----CcHHHHHHHHHHHHHHHHc------CCCC----------------CCCcccccCCcCchhHHHHHHHHHHH
Confidence 5432 1222346799999999984 2110 012221111 2245667777777665
Q ss_pred hhhCCCCchhhhHHHHHHHHHHH----HH-hccccCCCc-----ccC----------------CCCccch---HHHHHHH
Q 010631 321 KKLYPGHWQEDVDHCIKRAVKFI----EK-IQELDGSWY-----GSW----------------GVCFTYG---TWFGVKG 371 (505)
Q Consensus 321 ~~~~~~~~~~~i~~~i~rav~~L----~~-~Q~~DG~W~-----g~w----------------g~~~~y~---T~~al~a 371 (505)
.+.-......+....-++..+.+ .+ .-.++|... -+- +....|+ --..+..
T Consensus 416 a~iA~~~g~~~~a~~w~~~Ad~i~~~i~~~~~~~~g~~~~~~~f~r~~~~~~~~~~~~~~~~n~~~~~~~~~~vDaSlL~ 495 (648)
T TIGR01535 416 ADIAEQNGDAGSAQKYRETADNWQKLIENWTFTTNGPLGDGQYYLRIAGLGDPNADFLINIANGGGVYPEKEVLDPGFLE 495 (648)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCcCCCcccCCCCeEEEeecCCCCccccccccccccccCCCCCccCHHHHH
Confidence 43211000000011122222222 22 123332221 000 0000111 1123456
Q ss_pred HHHcCCCCCCcHHHHHHHHHHHhccCCC----CCCCcCc-cccc----ccccccCCCCCCchhHHHHHHHHHHHcCCCCC
Q 010631 372 LVAAGMNYSNSSSIRKACEFLLSKQRPS----GGWGESY-LSCQ----KKVYSNLEGDRSHVVNTAWAMLALIDAGQAET 442 (505)
Q Consensus 372 L~~~G~~~~~~~~i~ra~~~L~~~Q~~D----GgWge~~-~s~~----~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~ 442 (505)
|...|+...++|.+..-++-+.+.-..| |+|..-. ..+. +..|.+-.-+..-+..|.|--.-.++++..
T Consensus 496 L~~~G~~~~dDPri~~Tl~aIe~~L~~~~~~~g~~~RY~~Dgyg~~~~~~~~~~~~~G~~Wpi~T~~~~~y~l~~~~~-- 573 (648)
T TIGR01535 496 LVRLGVKSPDDPHILATLKEIDSTIKVDTPKGPSWYRYTHDGYGEPAKTEAYDGTGKGRLWPLLTGERGHYELAAGKD-- 573 (648)
T ss_pred HHHcCCcCCCCHHHHHHHHHHHHHhccCCCCCCeEEecCCCCCCCcCCCCCccCCcCCceeehhhhHHHHHHHHcCCh--
Confidence 6778877678999998887777666555 6664311 1110 001111001234556676644333344432
Q ss_pred CcHHHHHHHHHHHhcCcCCCCCCCCcccce-ec-cccccccCCchhhHH-HHHHHHHHHHh
Q 010631 443 DPTPLHRAARYLINSQMENGDYPQEEIMGV-FN-RNCMISYSAYRNIFP-IWALGEYRCRV 500 (505)
Q Consensus 443 d~~~i~rgv~~L~~~Q~~~G~w~~~~~~g~-f~-~~~~~~y~~y~~~fp-l~AL~~y~~~~ 500 (505)
...-++|+.+.-++.|--|++---++ -| +.+++.-+. ..+-| .|+=+.|.+++
T Consensus 574 ----a~~~l~~~~~~a~~~g~lpEQV~d~~~~~~~~~~~G~pt-~Sa~PL~WsHA~yi~l~ 629 (648)
T TIGR01535 574 ----ATPYLKAMEKFANEGGMIPEQVWDQTDLPSRGLFYGLPT-DSASPLNWAHAEYVKLL 629 (648)
T ss_pred ----HHHHHHHHHHhcCcCCCcCcccCCCCCCcccccccCCcC-CccccchhhHHHHHHHH
Confidence 34678999998888887666521111 11 112222221 12334 37888887764
No 74
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=95.97 E-value=0.94 Score=47.10 Aligned_cols=247 Identities=11% Similarity=0.017 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCC-----CCchhhHHHHHHhHHhhhccccccCCccchH
Q 010631 183 ATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGW-----PISDCTSEGLKASLLLSKLSSAIVGEPIETK 257 (505)
Q Consensus 183 ~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~-----pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~ 257 (505)
..++.++.|........ . .||+......++- ..+..+|..|.++..+... .+.+...+
T Consensus 14 ~~~~~~~~fw~~~~~d~-~------------~gg~~~~l~~~g~~~~~~k~~~~~ar~i~~~a~a~~~----~~~~~~l~ 76 (384)
T cd00249 14 WLLEDLLPFWLEAGLDR-E------------AGGFFECLDRDGQPFDTDRRLWLQARQVYCFAVAYLL----GWRPEWLE 76 (384)
T ss_pred HHHHHHHHHHHhcCCCC-C------------CCCeEEEECCCCCCCCCCCeEEEecHHHHHHHHHHHh----cCChhHHH
Confidence 34567788887765432 1 1555443222222 3456789999998766542 12333456
Q ss_pred HHHHHHHHHHh-cccCC-cceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHH
Q 010631 258 RLYDSVNVIFS-LQNAD-GGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHC 335 (505)
Q Consensus 258 ~i~~Av~~Ll~-~Qn~d-Ggw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~ 335 (505)
...+++++|.+ +..++ |||-.. .+++ |.......+.+.-+++|.||+.+.+... .++....
T Consensus 77 ~A~~~~~fl~~~~~d~~~Gg~~~~-~~~~-------------g~~~~~~~~l~~~a~~l~ala~~~~at~---d~~~l~~ 139 (384)
T cd00249 77 AAEHGLEYLDRHGRDPDHGGWYFA-LDQD-------------GRPVDATKDLYSHAFALLAAAQAAKVGG---DPEARAL 139 (384)
T ss_pred HHHHHHHHHHHhCcCCCCCCEEEE-EcCC-------------CCCcccccchHHHHHHHHHHHHHHHhcC---CHHHHHH
Confidence 78889999988 44456 999532 1110 0000111235567889999998766532 2445567
Q ss_pred HHHHHHHHHHhcc-ccCCCccc----CCC-CccchHHHHHHHHHHc----CCCCCCcHHHHHHHHHHHhcc--CCCCCCC
Q 010631 336 IKRAVKFIEKIQE-LDGSWYGS----WGV-CFTYGTWFGVKGLVAA----GMNYSNSSSIRKACEFLLSKQ--RPSGGWG 403 (505)
Q Consensus 336 i~rav~~L~~~Q~-~DG~W~g~----wg~-~~~y~T~~al~aL~~~----G~~~~~~~~i~ra~~~L~~~Q--~~DGgWg 403 (505)
+++.+++|.+... ++|+++.. +.. .-....+..+.+|..+ |.. ...+.+++.++.+...- .++|++-
T Consensus 140 A~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~~all~l~~~tgd~-~~~~~A~~l~~~~~~~~~~~~~G~~~ 218 (384)
T cd00249 140 AEETIDLLERRFWEDHPGAFDEADPGTPPYRGSNPHMHLLEAMLAAYEATGEQ-KYLDRADEIADLILDRFIDAESGVVR 218 (384)
T ss_pred HHHHHHHHHHHhccCCCcccCCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHhcCcccCeEE
Confidence 8888999988774 45655421 111 1122233223333332 221 22234455555555542 4467764
Q ss_pred cCccccc----ccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcC--cCCCCCCC
Q 010631 404 ESYLSCQ----KKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQ--MENGDYPQ 466 (505)
Q Consensus 404 e~~~s~~----~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q--~~~G~w~~ 466 (505)
+...... ...... -..++....+|+|+.|........-.+.+++.++++.+.- .+.|+|..
T Consensus 219 e~~~~~~~~~~~~~~~~--~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~d~~~G~~~~ 285 (384)
T cd00249 219 EHFDEDWNPYNGDKGRH--QEPGHQFEWAWLLLRIASRSGQAWLIEKARRLFDLALALGWDPERGGLYY 285 (384)
T ss_pred EEECCCCCCCcCcCCCc--CCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCcCccCCCEEE
Confidence 4322110 000000 0123445678888777665432111234566666766654 23366655
No 75
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=95.36 E-value=1.8 Score=48.48 Aligned_cols=232 Identities=16% Similarity=0.117 Sum_probs=120.3
Q ss_pred HHHHHHHhhhhhceeeeCCCceeecCC----------CCChhHHHHHHHHHH----hcCCCc---chHHHHHHHHHHHHh
Q 010631 132 EAFKLHIPRINDYLWIAEDGMKVQGYN----------GSQLWDTAFAVQAII----STNLVE---EYGATLKKAHKYIKD 194 (505)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~g~~~q~~~----------~s~vwDTa~a~~AL~----~ag~~~---~~~~~l~~A~~~L~~ 194 (505)
...++.++++.+. +.++|...|.++ +.|...++..+.|+. ..+-.+ +.-+.++++++|+.+
T Consensus 314 ~~a~~~l~~l~~~--q~~~G~~~~~~~~dG~~~~~~~~~Q~D~~g~~l~al~~y~~~t~d~~~~~~~~~~v~~a~~fl~~ 391 (616)
T TIGR01577 314 DRVDRFFRWAMQT--QSRDGSWQQRYYLNGRLAPLQWGLQIDETGSILWAMDQHYRLTNDRAFLEEIWESVQKAAQYLIL 391 (616)
T ss_pred HHHHHHHHHHHHh--hCcCCCcceEEecCCCCCCCCCCccccchhHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567777877765 456775544431 334455787777763 233221 334779999999999
Q ss_pred cccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHh-----c
Q 010631 195 SQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFS-----L 269 (505)
Q Consensus 195 ~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~-----~ 269 (505)
....+ + +....|-|.... +.. +-..+.+..||..+.+.... .|.+...+...+..+.|.+ +
T Consensus 392 ~~~~~-----l----~~~~~~lWEer~---G~~-~~t~a~~~aAL~~aa~lA~~-lGd~~~a~~~~~~Ad~ik~~i~~~~ 457 (616)
T TIGR01577 392 FIDPE-----T----PLPCRDLWEERE---GVF-TYTASAVYGGLDAAAAVADK-LGEKRLAQNWKKAAEFIKRAVEERF 457 (616)
T ss_pred hccCC-----C----CCCCCccceecC---Ccc-CccHHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHHHHhc
Confidence 75321 0 111224454322 211 23356666666554433211 2332223455555666554 2
Q ss_pred ccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHH-hhhhCCCCchhhhHHHHHHHHHHHHHhcc
Q 010631 270 QNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTS-FKKLYPGHWQEDVDHCIKRAVKFIEKIQE 348 (505)
Q Consensus 270 Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~-~~~~~~~~~~~~i~~~i~rav~~L~~~Q~ 348 (505)
=++++|+-.-. +++...+ ..+|.+ +.+|.. ++-..++. +.+...++-+.+...
T Consensus 458 w~~~~g~F~~~----------------~~~~~~~-~~vDaS---lL~l~~~~g~l~~~D------pr~v~Tv~~I~~~L~ 511 (616)
T TIGR01577 458 WLPERQVFAKG----------------IKLMVLD-KTIDIS---ILGISVPFNLIAPDD------ERMVKMAEAIEKHLT 511 (616)
T ss_pred cCCCCCEEEEe----------------ecCCCCC-CcccHH---HHhHHHhcCCCCCCC------hHHHHHHHHHHHHhc
Confidence 34454441100 1100001 123332 334433 44332332 345555555555443
Q ss_pred c--cCCCcccC-------CCCccchHHHHHHHHHHcCCCCCCc---------HHHHHHHHHHHhccCCCCCCCcCc
Q 010631 349 L--DGSWYGSW-------GVCFTYGTWFGVKGLVAAGMNYSNS---------SSIRKACEFLLSKQRPSGGWGESY 406 (505)
Q Consensus 349 ~--DG~W~g~w-------g~~~~y~T~~al~aL~~~G~~~~~~---------~~i~ra~~~L~~~Q~~DGgWge~~ 406 (505)
. +|+|+ |+ |..++..|.|...++..+|...... ...++-++|++++.++.|-+.|..
T Consensus 512 ~~~~ggi~-RY~~D~y~~g~~w~i~T~wla~~~~~~g~~~~~~~~~~~~~~~~~A~~ll~~~~~~~~~~Gll~Eqv 586 (616)
T TIGR01577 512 SPIVGGIK-RYENDPYVGGNPWILTTLWLSQLYIKQGRILKALNHNGADIYLQKSKKLLKWVMDHRTDLGLLPEQV 586 (616)
T ss_pred ccCCCeee-CCCCCCCCCCCcHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHhcCCCCCCCcccc
Confidence 2 45563 22 3556777999999999888651111 245567899999999999998864
No 76
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=95.22 E-value=0.4 Score=53.62 Aligned_cols=115 Identities=19% Similarity=0.133 Sum_probs=74.2
Q ss_pred hhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceee-eecccccchhcccCcccccCCcccccCCCc
Q 010631 230 DCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFAT-YELMRSYPWLEVLNPAETFGDIVIDYPCVE 308 (505)
Q Consensus 230 d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~-~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~ 308 (505)
=|.++++.||+.+. ..+..++.++||.+.|.++|.|.- |..+....|.+ --.|
T Consensus 298 RD~a~~a~AL~~~G-----------~~~~a~~~~~~l~~~~~~~G~~lq~y~vdG~~~~~~---------------iQlD 351 (648)
T TIGR01535 298 RDLYQVANAFLAAG-----------DVDSALRSLDYLAKVQQDNGMFPQNSWVDGKPYWTG---------------IQLD 351 (648)
T ss_pred hhHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHhccCCCcCceeccCCCCCCCC---------------cccc
Confidence 46788888887553 356788999999999999998732 33333322211 2257
Q ss_pred chHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhcc--ccCCCcccCCCCccchHHHHHHHHHHc
Q 010631 309 CTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQE--LDGSWYGSWGVCFTYGTWFGVKGLVAA 375 (505)
Q Consensus 309 ~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~--~DG~W~g~wg~~~~y~T~~al~aL~~~ 375 (505)
.|+.+|.++-.+.+.. . ....+.|+++++||.+.-. ..|-|..+-|. ..|..+.++.||.++
T Consensus 352 ~~g~~i~~~~~l~~~~--~--~~~~~~vk~aadfl~~~~p~p~~d~WEer~g~-~~~T~a~v~aaL~~A 415 (648)
T TIGR01535 352 ETAFPILLAYRLHRYD--H--AFYDKMLKPAADFIVKNGPKTGQERWEEIGGY-SPSTLAAEIAGLTAA 415 (648)
T ss_pred HHHHHHHHHHHHHHcC--c--HHHHHHHHHHHHHHHHcCCCCCCCcccccCCc-CchhHHHHHHHHHHH
Confidence 8999988776554421 1 3345789999999999642 23667655554 334455555677654
No 77
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=94.21 E-value=2.4 Score=47.31 Aligned_cols=270 Identities=14% Similarity=0.134 Sum_probs=138.4
Q ss_pred hHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCC------CCC-cccCCCCCC-chhhHH
Q 010631 163 WDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGA------WPF-STADHGWPI-SDCTSE 234 (505)
Q Consensus 163 wDTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~Gg------W~f-~~~~~~~pd-~d~Ta~ 234 (505)
-|++++++||..+|. .....+..+||.+.|..+ |.|...|.. .| |.= +.....+|. .|.|+.
T Consensus 288 RD~~~~~~AL~~~G~----~~~a~~~f~~l~~~~~~~---~~~~~~y~~---~g~~~~~~w~~~~~~~~~~pv~~~~~a~ 357 (612)
T COG3387 288 RDASYAALALLAIGY----KKEALRFFEFLPDVQTPN---GKLYHKYSI---DGSDLAESWLPVSGYYNSFPVRIGNTAL 357 (612)
T ss_pred CcHHHHHHHHHHcCC----HHHHHHHHHHHHHhhCCC---CceeeEEec---CCCccccccccccCCCCCCceEEcchhh
Confidence 489999999999997 456778889999999986 444444431 23 221 000122332 477888
Q ss_pred HHHHhHHhhhccccccC-CccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccC-CCcchHH
Q 010631 235 GLKASLLLSKLSSAIVG-EPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYP-CVECTSA 312 (505)
Q Consensus 235 al~aL~~~~~~~~~~~g-~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~-~~~~Ta~ 312 (505)
...+|....+....+.. .+.....+..+.+++..+-...=+|..- .++-|..... ++..++.
T Consensus 358 ~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----------------~~~~WEer~g~~~yt~~~ 421 (612)
T COG3387 358 VQGALDVYGSIMNDIYFYAKYYAIYILPAADYLRRMEKIKANLPTP----------------DFDLWEERGGHFTYTKAT 421 (612)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhhhcCCCCC----------------ccceecccCCcccchHHH
Confidence 87776531111100000 0011233444555555421111122110 0111111111 2445555
Q ss_pred HHHHHHHhhhh---CC-CCchhhhHHHHHHHHHHHHHh-ccccC-CCcccCCC--CccchHHHHHHHHHHcCCCCCCcHH
Q 010631 313 SIQALTSFKKL---YP-GHWQEDVDHCIKRAVKFIEKI-QELDG-SWYGSWGV--CFTYGTWFGVKGLVAAGMNYSNSSS 384 (505)
Q Consensus 313 vl~aL~~~~~~---~~-~~~~~~i~~~i~rav~~L~~~-Q~~DG-~W~g~wg~--~~~y~T~~al~aL~~~G~~~~~~~~ 384 (505)
+..||-..... .. ....+.......+--+.+.+. -..++ .|.-.-+. ..++. .++.+|...|+...+++.
T Consensus 422 ~~agLd~A~~lA~~~gd~~~a~~~~~~ad~ik~~v~~~~~~~~~~~f~r~~~~~~~~~vD--asll~l~~fg~i~~~D~~ 499 (612)
T COG3387 422 VYAGLDAAADLAEEFGDKGSAEHWRKTADELKEAVLRRGYAEDGGYFVRSLGRKPDDTVD--ASLLGLVLFGFIPPDDPR 499 (612)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhcccccCCeeehhcCCCcccccc--HHHhhccccCccCCCCHH
Confidence 66666554321 11 111111112222222222222 22333 33221221 22222 234556667877678888
Q ss_pred HHHHHHHHHhccCCCC-CCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCC
Q 010631 385 IRKACEFLLSKQRPSG-GWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGD 463 (505)
Q Consensus 385 i~ra~~~L~~~Q~~DG-gWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~ 463 (505)
+.+-++-+...-..+| ||..-..-+ +..+. .++.+-+..|.|-...+.+.|..+ + +++.++||++.++++|-
T Consensus 500 ~~~t~~~I~~~L~~~~~gi~RY~~~~-~d~~~--~~~~~w~i~t~Wl~~~~~~~g~~~---~-a~~ll~~l~~~a~~~gl 572 (612)
T COG3387 500 ILATVEAIERELLVDGGGIRRYNNEY-DDGLG--GDNGPWIITTLWLSEYYLALGRLD---E-AKKLLEWLLAFASPLGL 572 (612)
T ss_pred HHHHHHHHHHHHhhcCCcEEcCcccc-ccccC--CCCCcceeehhHHHHHHHHccchH---H-HHHHHHHHHHhcCCCCC
Confidence 8888888888888877 664321100 11111 112355678999999999998762 3 78889999999999999
Q ss_pred CCCC
Q 010631 464 YPQE 467 (505)
Q Consensus 464 w~~~ 467 (505)
.+++
T Consensus 573 l~EQ 576 (612)
T COG3387 573 LPEQ 576 (612)
T ss_pred cchh
Confidence 8876
No 78
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=93.28 E-value=14 Score=40.50 Aligned_cols=144 Identities=15% Similarity=0.167 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCcc----ccccCCCCCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchH
Q 010631 182 GATLKKAHKYIKDSQVLEDCPGNLD----FWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETK 257 (505)
Q Consensus 182 ~~~l~~A~~~L~~~Q~~~~~~Gd~~----~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~ 257 (505)
.+..+...++++..|.... ...++ ...+....|||.=......+.+. ++..-|.|+..+... .+++.-.+
T Consensus 10 ~~~~~~~~~~~l~~~~d~l-l~~~r~~agl~~~~~~~g~we~~~~~~~~~~~-~~g~wl~a~a~~~~~----~~D~~l~~ 83 (520)
T PF07944_consen 10 KRRQELNRAYLLPLDPDRL-LYNFRSHAGLPNFAIAYGGWEGEFPGWWFRGH-DVGKWLEAAAYAYAY----TGDPELKA 83 (520)
T ss_pred HHHHHHHHHHHHHhHHHHH-hhhcCcccCCCCccccCCCCccCCCCCccCCC-cHHHHHHHHHHHHHH----CCCHHHHH
Confidence 3455566666666554321 01111 11223356888622222223322 244555554433221 12333467
Q ss_pred HHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHH
Q 010631 258 RLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIK 337 (505)
Q Consensus 258 ~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ 337 (505)
.+++.|+.|+++|.+||-.++|.... ...+...|.. +.-...+-.+++++|....+...+ +++-+++.
T Consensus 84 ~~d~~V~~l~~~Q~~dGYl~~~~~~~------~~~~~~~w~~---~~he~Y~~~~ll~gl~~~y~~tG~---~~~L~v~~ 151 (520)
T PF07944_consen 84 KADEIVDELAAAQQPDGYLGTYPEER------NFNPDDRWAP---DMHELYCLGKLLEGLIDYYEATGN---ERALDVAT 151 (520)
T ss_pred HHHHHHHHHHHhccCCceeccccccc------ccccccCCCC---CccceehHhHHHHHHHHHHHHHCc---HHHHHHHH
Confidence 89999999999999999888765432 0011112222 111246778899999876654322 34557888
Q ss_pred HHHHHH
Q 010631 338 RAVKFI 343 (505)
Q Consensus 338 rav~~L 343 (505)
|..+|+
T Consensus 152 k~ad~~ 157 (520)
T PF07944_consen 152 KLADWV 157 (520)
T ss_pred HHHHHH
Confidence 999999
No 79
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.23 E-value=11 Score=39.32 Aligned_cols=177 Identities=17% Similarity=0.186 Sum_probs=99.7
Q ss_pred CChhHHHHHHHHHHhcCCC---cchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHH
Q 010631 160 SQLWDTAFAVQAIISTNLV---EEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGL 236 (505)
Q Consensus 160 s~vwDTa~a~~AL~~ag~~---~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al 236 (505)
-++=|.|...+||..+... .-....-++-++||.+.-..+-+ ..-|-|+ .+++.
T Consensus 106 Q~~VEaa~la~aL~~a~~~lW~~L~~~~k~~l~~wL~~~~~~~~~------------~nNW~lF-----------~v~v~ 162 (361)
T PF10022_consen 106 QRLVEAASLALALLRAPEWLWDPLDEEEKENLVDWLKQIRGIKPP------------DNNWLLF-----------RVMVE 162 (361)
T ss_pred hhHhHHHHHHHHHHHCHHHHHhhCCHHHHHHHHHHHHhcCcCCCc------------cchhHHH-----------HHHHH
Confidence 4567899999999987410 11134566778899866443311 1333332 44455
Q ss_pred HHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHH
Q 010631 237 KASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQA 316 (505)
Q Consensus 237 ~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~a 316 (505)
.+|..+ |.+.+.+.++.+++-+.+.--.| ||-. +.. ....|| -.+.+++-
T Consensus 163 ~~L~~~--------G~~~d~~~i~~~l~~~e~~Y~Gd-GWY~-DG~----------------~~~~DY----Yns~aih~ 212 (361)
T PF10022_consen 163 AFLKKV--------GEEYDEERIDYDLERIEEWYLGD-GWYS-DGP----------------EFQFDY----YNSWAIHP 212 (361)
T ss_pred HHHHHc--------CCCCcHHHHHHHHHHHHHHhccC-Cccc-cCC----------------ccCCcc----hHHHHHHH
Confidence 555432 45677899999999999988765 5521 110 012355 23566655
Q ss_pred HHHh-hhhCCCCchhhhHHHHHHHHHHHHHhc---cccCCCcccCCCCccchH--HHHHHHHHHcCC--CCC-CcHHHHH
Q 010631 317 LTSF-KKLYPGHWQEDVDHCIKRAVKFIEKIQ---ELDGSWYGSWGVCFTYGT--WFGVKGLVAAGM--NYS-NSSSIRK 387 (505)
Q Consensus 317 L~~~-~~~~~~~~~~~i~~~i~rav~~L~~~Q---~~DG~W~g~wg~~~~y~T--~~al~aL~~~G~--~~~-~~~~i~r 387 (505)
.... .+..++...+..+...+|+.+|..... .+||+.. -+|.+-+|-. ...+.+++.++. ... .-..+++
T Consensus 213 y~l~~~~~~~~~~~~~~~~~~~Ra~~fa~~~~~~f~~dG~~~-~~GRSltYRfA~~a~~~~~a~~~~lp~~~~~~g~vR~ 291 (361)
T PF10022_consen 213 YLLLYARLMGDEDPERAARYRQRAQRFAEDYERMFSPDGAAP-PFGRSLTYRFAAFAFLAAAALAGVLPEPLISPGQVRR 291 (361)
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcC-CccccHHHHHHHHHHHHHHHHcCCCCccCCCHHHHHH
Confidence 4442 222233332335567788888877644 5898765 4666666653 334445555555 112 2345555
Q ss_pred HHH
Q 010631 388 ACE 390 (505)
Q Consensus 388 a~~ 390 (505)
++.
T Consensus 292 ~l~ 294 (361)
T PF10022_consen 292 ALS 294 (361)
T ss_pred HHH
Confidence 443
No 80
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.47 E-value=11 Score=42.05 Aligned_cols=131 Identities=18% Similarity=0.287 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHH
Q 010631 182 GATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYD 261 (505)
Q Consensus 182 ~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~ 261 (505)
.+.+.++..-|.+..-++. |||+.... +| ++..+.-|+..... .| ++.....
T Consensus 182 ~~~l~~~~~~l~~~~D~~~--------------GGfg~~pK---FP----~~~~l~~Llr~~~~----~~---d~~~~~~ 233 (667)
T COG1331 182 EEVLDRAAEALARSFDREY--------------GGFGSAPK---FP----PPHLLLFLLRYSLR----TG---DERALDM 233 (667)
T ss_pred hHHHHHHHHHHHHhcchhh--------------CCcCCCCC---CC----ChHHHHHHHHHHHh----hC---CHHHHHH
Confidence 4678899999998876642 88876553 35 66667666543211 11 2233444
Q ss_pred HHHHHHhcccC------CcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHH
Q 010631 262 SVNVIFSLQNA------DGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHC 335 (505)
Q Consensus 262 Av~~Ll~~Qn~------dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~ 335 (505)
+..-|..|-.. .|||-.|..++. |+ +| .|....+|. |..+.++...... ...+.+...
T Consensus 234 ~~~TL~~ma~GGIyDhlgGGF~RYStD~~--Wl--vP---HFEKMLyDn------A~l~~~y~~ay~~---tgd~~y~~~ 297 (667)
T COG1331 234 VLRTLDAMARGGIYDHLGGGFFRYSTDRE--WL--VP---HFEKMLYDN------ALLLRAYAEAYRA---TGDDLYRRA 297 (667)
T ss_pred HHHHHHHHHccCCccccCCceeeeecCCc--ee--ch---hHHHHHHHH------HHHHHHHHHHHHH---hCCHHHHHH
Confidence 44444445442 589988876653 32 22 244444443 4444444443332 122456778
Q ss_pred HHHHHHHHHHhc-cccCCCccc
Q 010631 336 IKRAVKFIEKIQ-ELDGSWYGS 356 (505)
Q Consensus 336 i~rav~~L~~~Q-~~DG~W~g~ 356 (505)
++.-++||.+.. .|+|+|+.+
T Consensus 298 a~~i~~~l~rel~sp~ggFyss 319 (667)
T COG1331 298 AEGILDYLLRELYSPEGGFYSS 319 (667)
T ss_pred HHHHHHHHHHHhcCCCCceeec
Confidence 999999998754 578888753
No 81
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=88.39 E-value=18 Score=36.96 Aligned_cols=214 Identities=14% Similarity=0.122 Sum_probs=101.6
Q ss_pred hhhhhhhheec--ccCCCCHHHHHHHhhhhhceeee----CCCc-eeecCCCCChhHHHHH--HHHHHh----cCCCcch
Q 010631 115 VNKVLNMLCCW--VEDPNSEAFKLHIPRINDYLWIA----EDGM-KVQGYNGSQLWDTAFA--VQAIIS----TNLVEEY 181 (505)
Q Consensus 115 v~~~l~~l~~~--~~~~~~~~~~~~~~~l~~~~~~~----~~g~-~~q~~~~s~vwDTa~a--~~AL~~----ag~~~~~ 181 (505)
|+.+.+++.+. -+.-.+|.+.++...+.+++... ++|+ +... +.-|+|+=+|- ..-+++ .|.++-+
T Consensus 79 id~i~~g~~L~~L~e~T~~~~Yl~~a~~~a~~l~~~~Rt~eG~f~H~~~-~p~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~ 157 (357)
T COG4225 79 IDHIAAGLTLLPLYEQTGDPRYLEAAIKLASWLVHEPRTKEGGFQHKVK-YPHQMWLDTLYMAGLFLAKYGQVTGRPEYF 157 (357)
T ss_pred hhhhccCceeeehhhhhCCHHHHHHHHHHHHHHhhCcccCCCccccccC-chhHhhhcchhhhhHHHHHHHHHhCCHHHH
Confidence 44444444442 33456777888777777766533 3443 2233 47899985542 222333 2333333
Q ss_pred HHHHHHHHHHHHhcccCCCCC-CCccccccCCCCCCCCCcccC--CCC--CCchhhHHHHHHhHHhhhccccccCCccch
Q 010631 182 GATLKKAHKYIKDSQVLEDCP-GNLDFWYRHISKGAWPFSTAD--HGW--PISDCTSEGLKASLLLSKLSSAIVGEPIET 256 (505)
Q Consensus 182 ~~~l~~A~~~L~~~Q~~~~~~-Gd~~~~~~~~~~GgW~f~~~~--~~~--pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~ 256 (505)
++.+. +|....+...++. |=|-..+-....+-|.-...+ ..| .....+ ++|--++.+ .|........-.
T Consensus 158 d~~~~---QF~~~~~~l~Dp~TGL~YH~wd~~~~~~w~~~~sG~~~fWaRg~gW~~-mal~d~le~--lp~~~~~r~~l~ 231 (357)
T COG4225 158 DEALY---QFSLHEKYLRDPETGLYYHGWDEDGTMPWANNESGEPAFWARGNGWYA-MALADLLEL--LPEDHPDRRELL 231 (357)
T ss_pred HHHHH---HHHHHHHHccCCCcCceEEeeccCCCCccccccCCCceeeecccchHH-HHHHHHHHh--CCCCCchHHHHH
Confidence 44443 4555555543332 322111111111223211111 001 111222 222222221 121100112234
Q ss_pred HHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHH
Q 010631 257 KRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCI 336 (505)
Q Consensus 257 ~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i 336 (505)
..+++-++=|++.|..+|=|-.--.+. .-.++++.+|.++-+-+........+-.++..+.+
T Consensus 232 ~~l~d~v~al~r~Qde~GlW~tiLDd~------------------~~~sy~EsSaSa~faYallkgi~~G~l~~~~~~~~ 293 (357)
T COG4225 232 NVLRDLVDALIRYQDESGLWHTILDDG------------------RPGSYLESSASAGFAYALLKGINLGILDPEYAPVA 293 (357)
T ss_pred HHHHHHHHHHHHhhccccchhhhhccC------------------CCCCchhhhHHHHHHHHHHHHHhcCCCCchhhHHH
Confidence 678888999999999999995321110 01134555555555444433221222223344789
Q ss_pred HHHHHHHHHhccccCCC
Q 010631 337 KRAVKFIEKIQELDGSW 353 (505)
Q Consensus 337 ~rav~~L~~~Q~~DG~W 353 (505)
+||.+=|.++-.++|--
T Consensus 294 ~kA~~aLl~~i~~~g~~ 310 (357)
T COG4225 294 EKALDALLGHIDEEGEV 310 (357)
T ss_pred HHHHHHHHhhccccccc
Confidence 99999999998887743
No 82
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=72.67 E-value=18 Score=38.47 Aligned_cols=92 Identities=15% Similarity=0.154 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHhcccCCcceeeeeccc--ccc-hh--cccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCch-
Q 010631 256 TKRLYDSVNVIFSLQNADGGFATYELMR--SYP-WL--EVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQ- 329 (505)
Q Consensus 256 ~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~--~~~-~l--~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~- 329 (505)
-+.++=++|||++||.++|+|-.--.+. .+. |- +.++..+.-.......+..+.|+.+..+|+.....+.+...
T Consensus 97 lde~kwg~D~llkm~~~~~~~~~qvgdg~~~h~~w~~~~~~~~~~~~~~~~~~~~~t~~~~~~AAalA~As~v~k~~d~~ 176 (444)
T PF00759_consen 97 LDEAKWGLDWLLKMQDSDGTFYAQVGDGGVDHKVWGRPEIMPDDDPSYRYDAPNPGTDATAEFAAALAAASRVFKDFDPA 176 (444)
T ss_dssp HHHHHHHHHHHHHTBSCTTEEEEEESTHHHHHTEESTGGGTGSGESEEEEETTB-EHHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHhccCCCCceeeeccCccchhhcccCCCCCCCCCCcceEecCCCchHHHHHHHHHHHHHHHhcccCCHH
Confidence 3667889999999999988774321111 111 11 01110000001122223456677767777765544332211
Q ss_pred --hhhHHHHHHHHHHHHHhc
Q 010631 330 --EDVDHCIKRAVKFIEKIQ 347 (505)
Q Consensus 330 --~~i~~~i~rav~~L~~~Q 347 (505)
++.....+++-+|+.+..
T Consensus 177 ~A~~~L~~A~~~~~~a~~~~ 196 (444)
T PF00759_consen 177 YAAQCLKAAKEAYAFAKKNP 196 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 233345566667776654
No 83
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=71.26 E-value=16 Score=45.28 Aligned_cols=97 Identities=14% Similarity=0.109 Sum_probs=62.0
Q ss_pred CCCchhhHHHHHHhHHhhhccccc-cCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCccccc
Q 010631 226 WPISDCTSEGLKASLLLSKLSSAI-VGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDY 304 (505)
Q Consensus 226 ~pd~d~Ta~al~aL~~~~~~~~~~-~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~ 304 (505)
|.+..-|+..++.++.+....... ....-..+.++.|+.-|+++|+.||+|+.+.... .
T Consensus 1167 ygc~EQt~S~~~pll~~~~~~~~~~~~~~~~~~~l~~a~~rL~~~Q~~~G~F~~W~~~~--------------------~ 1226 (1621)
T COG2373 1167 YGCAEQTASRLLPLLYAQKATADPGAADNDLRARLQDAIGRLLSLQGSNGAFGLWGGNG--------------------S 1226 (1621)
T ss_pred ccchhhhhhhHHHHHhhhhhhccccccchhHHHHHHHHHHHHHhhhhcCCceeecCCCC--------------------C
Confidence 345666777777777665433221 1112235689999999999999999999775421 1
Q ss_pred CCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHh
Q 010631 305 PCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKI 346 (505)
Q Consensus 305 ~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~ 346 (505)
+.+-+|+.++.+|...++..-.-+ ...+.++.+++.+.
T Consensus 1227 ~d~~ltaYa~~Fl~~A~e~g~~vp----~~~~~~~~~~~~~~ 1264 (1621)
T COG2373 1227 GDPWLTAYAVDFLLRAREQGYSVP----SDALNQMLERLLEY 1264 (1621)
T ss_pred cchhhhHHHHHHHhhhhhcCcCCC----HHHHHHHHHHHHHH
Confidence 335678999999988754321111 35778887755543
No 84
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=68.55 E-value=78 Score=35.49 Aligned_cols=133 Identities=18% Similarity=0.165 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCCC---cchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHHHhHH
Q 010631 165 TAFAVQAIISTNLV---EEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLL 241 (505)
Q Consensus 165 Ta~a~~AL~~ag~~---~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL~~ 241 (505)
-++++.||+.++.. +++-+..+++.+||.+....+ +..++.. .|+=.+ . .-.+|=|+.+.+++.
T Consensus 413 Nglmi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~------rl~~~~~-~G~a~~----~--g~leDYA~~i~gll~ 479 (667)
T COG1331 413 NGLMIAALAEAGRVLGDPEYLEAAERAADFILDNLYVD------RLLRRYR-GGEAAV----A--GLLEDYAFLILGLLA 479 (667)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhccc------chheeee-cCcccc----c--ccchhHHHHHHHHHH
Confidence 47889999987642 235577889999999998864 1111111 122111 1 235667777777766
Q ss_pred hhhccccccCCccchHHHHHHH----HHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHH
Q 010631 242 LSKLSSAIVGEPIETKRLYDSV----NVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQAL 317 (505)
Q Consensus 242 ~~~~~~~~~g~~~~~~~i~~Av----~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL 317 (505)
+.... .+.+-+..|. +-+...+.+.|||-...... ...+. .+.+ ..|-.++...+.++.+|
T Consensus 480 lye~t-------~d~~yL~~A~~L~~~~i~~f~d~~gGf~~t~~~~-~~l~i--r~~~-----~~D~a~~S~na~~~~~L 544 (667)
T COG1331 480 LYEAT-------GDLAYLEKAIELADEAIADFWDDEGGFYDTPSDS-EDLLI--RPKE-----PTDGATPSGNAVAAQAL 544 (667)
T ss_pred HHHhh-------CcHHHHHHHHHHHHHHHHHhcCCCCCcccCCCcc-ccccc--CCCC-----CCCCCCCCHHHHHHHHH
Confidence 54321 1223344443 34555677778873222111 11110 0112 23445556667777777
Q ss_pred HHhhhhCC
Q 010631 318 TSFKKLYP 325 (505)
Q Consensus 318 ~~~~~~~~ 325 (505)
..+.....
T Consensus 545 ~~Ls~ltg 552 (667)
T COG1331 545 LRLSLLTG 552 (667)
T ss_pred HHHHhhcC
Confidence 77665543
No 85
>PLN00119 endoglucanase
Probab=66.20 E-value=1.8e+02 Score=31.75 Aligned_cols=181 Identities=12% Similarity=0.102 Sum_probs=81.0
Q ss_pred hhHHHHHHHHHHh--c-C-CCcchHHHHHHHHHHHHhcccCCCCCC---Cccccc--cC------CCCCCCCCcccCCC-
Q 010631 162 LWDTAFAVQAIIS--T-N-LVEEYGATLKKAHKYIKDSQVLEDCPG---NLDFWY--RH------ISKGAWPFSTADHG- 225 (505)
Q Consensus 162 vwDTa~a~~AL~~--a-g-~~~~~~~~l~~A~~~L~~~Q~~~~~~G---d~~~~~--~~------~~~GgW~f~~~~~~- 225 (505)
+|..++.+.-|.. + | .+.++.++|.+++.|...+..-..+.. .|+-.. .+ ...|||- .-.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~nY~~aL~~sl~Ff~aQRsG~lp~~~r~~WRgds~~~dg~~~~~DlsGGwy-DAGD~~K 87 (489)
T PLN00119 9 LWTLSICIVLLVMSMARGAVSTNYGEALTKSLLYFEAQRSGKLPSNQRVTWRGDSALRDGSDAHVDLTGGYY-DAGDNMK 87 (489)
T ss_pred hhHHHHHHHHHHHHHhcccccccHHHHHHHHHHHhHhcCCCCCCccCCCCCcCcccccCCCCCcccCCCCce-eCCCCce
Confidence 5765554443332 2 2 344789999999999988876543221 132211 01 1346772 212211
Q ss_pred --CCCchhhHHHHHH--hHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeee--ecccccchhcccCcccc-cC
Q 010631 226 --WPISDCTSEGLKA--SLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATY--ELMRSYPWLEVLNPAET-FG 298 (505)
Q Consensus 226 --~pd~d~Ta~al~a--L~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~--~~~~~~~~l~~~~~~e~-f~ 298 (505)
.| .-.|+ .+++ .......-......+-..+.++-++|||++||..++.+-.- +.+.++.+. ..|-+. ..
T Consensus 88 f~~p-~a~s~-t~L~w~~~ef~~~~~~~~~~~~~lde~kw~~Dyllk~~~~~~~~y~qVgdg~~DH~~W--~~Pe~~~~~ 163 (489)
T PLN00119 88 FGFP-LAFTT-TMLAWSNIEMGSQLKAHHELGNALAALKWATDYLIKAHPQPNVLYGQVGDGNSDHACW--MRPEDMTTP 163 (489)
T ss_pred eCcc-hHHHH-HHHHHHHHHhHHHHhcCCccHHHHHHHHHHHHHHHHhcCCCCeEEEEeccCCCccccc--CChhhCCCc
Confidence 13 11122 1212 11121110000011112466777899999999887776431 122222111 112111 11
Q ss_pred Cc--ccc--cCCCcchHHHHHHHHHhhhhCCCCch---hhhHHHHHHHHHHHHHhc
Q 010631 299 DI--VID--YPCVECTSASIQALTSFKKLYPGHWQ---EDVDHCIKRAVKFIEKIQ 347 (505)
Q Consensus 299 ~~--~~d--~~~~~~Ta~vl~aL~~~~~~~~~~~~---~~i~~~i~rav~~L~~~Q 347 (505)
+. .++ .+..++++....+|+.....+.+... ++.-...+++-+|..+..
T Consensus 164 R~~y~i~~~~pgSd~a~~~AAAlA~as~vfk~~D~~yA~~lL~~Ak~~y~fA~~~~ 219 (489)
T PLN00119 164 RTSYRIDAQHPGSDLAGETAAAMAAASIAFAPSDPAYASILIGHAKDLFEFAKAHP 219 (489)
T ss_pred CceeecCCCCCchHHHHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 11 122 23345666666666665544332211 223344556677777653
No 86
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=64.75 E-value=74 Score=39.74 Aligned_cols=72 Identities=19% Similarity=0.121 Sum_probs=52.6
Q ss_pred chHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHH
Q 010631 180 EYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRL 259 (505)
Q Consensus 180 ~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i 259 (505)
+.+..++.|+.-|.+.|..+ |++++-..+ +..|...||.+...|+.++. .|..++.+.+
T Consensus 1196 ~~~~~l~~a~~rL~~~Q~~~---------------G~F~~W~~~-~~~d~~ltaYa~~Fl~~A~e-----~g~~vp~~~~ 1254 (1621)
T COG2373 1196 DLRARLQDAIGRLLSLQGSN---------------GAFGLWGGN-GSGDPWLTAYAVDFLLRARE-----QGYSVPSDAL 1254 (1621)
T ss_pred hHHHHHHHHHHHHHhhhhcC---------------CceeecCCC-CCcchhhhHHHHHHHhhhhh-----cCcCCCHHHH
Confidence 35788999999999999876 444433333 44688999999999987743 2456778999
Q ss_pred HHHHHHH-HhcccC
Q 010631 260 YDSVNVI-FSLQNA 272 (505)
Q Consensus 260 ~~Av~~L-l~~Qn~ 272 (505)
.++.+++ ..+||+
T Consensus 1255 ~~~~~~~~~~l~n~ 1268 (1621)
T COG2373 1255 NQMLERLLEYLQNP 1268 (1621)
T ss_pred HHHHHHHHHHHhCc
Confidence 9997754 456665
No 87
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=63.97 E-value=1.8e+02 Score=29.95 Aligned_cols=162 Identities=16% Similarity=0.146 Sum_probs=89.7
Q ss_pred HhcccCC-ccee-eeecccccchhcccCcc-cccCCcccccCCCcchHHHHHHHHHhhhhCC-CC-chhhhHHHHHHHHH
Q 010631 267 FSLQNAD-GGFA-TYELMRSYPWLEVLNPA-ETFGDIVIDYPCVECTSASIQALTSFKKLYP-GH-WQEDVDHCIKRAVK 341 (505)
Q Consensus 267 l~~Qn~d-Ggw~-~~~~~~~~~~l~~~~~~-e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~-~~-~~~~i~~~i~rav~ 341 (505)
.-.|.++ |=|- +|+.+++.+|.+..+-. ..+++ ..+-+..+|..+-+..| +| .+.++...++.-++
T Consensus 169 ~~l~Dp~TGL~YH~wd~~~~~~w~~~~sG~~~fWaR---------g~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~ 239 (357)
T COG4225 169 KYLRDPETGLYYHGWDEDGTMPWANNESGEPAFWAR---------GNGWYAMALADLLELLPEDHPDRRELLNVLRDLVD 239 (357)
T ss_pred HHccCCCcCceEEeeccCCCCccccccCCCceeeec---------ccchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence 3345565 4442 35555555666543210 11221 22334455555443333 22 23456778899999
Q ss_pred HHHHhccccCCCccc--C--CCCc--cchHHHHHHHHHH---cCCC-CCCcHHHHHHHHHHHhccCCCCC--CCcCcccc
Q 010631 342 FIEKIQELDGSWYGS--W--GVCF--TYGTWFGVKGLVA---AGMN-YSNSSSIRKACEFLLSKQRPSGG--WGESYLSC 409 (505)
Q Consensus 342 ~L~~~Q~~DG~W~g~--w--g~~~--~y~T~~al~aL~~---~G~~-~~~~~~i~ra~~~L~~~Q~~DGg--Wge~~~s~ 409 (505)
=|.+.|.++|-|+-- - ..+| +.+|+....||.. .|.- ....+.++||.+-|+.+-.++|- |-.....|
T Consensus 240 al~r~Qde~GlW~tiLDd~~~~sy~EsSaSa~faYallkgi~~G~l~~~~~~~~~kA~~aLl~~i~~~g~~g~vs~~~~~ 319 (357)
T COG4225 240 ALIRYQDESGLWHTILDDGRPGSYLESSASAGFAYALLKGINLGILDPEYAPVAEKALDALLGHIDEEGEVGGVSLGTIV 319 (357)
T ss_pred HHHHhhccccchhhhhccCCCCCchhhhHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhhcccccccceeecCccc
Confidence 999999999999742 1 1122 4567777777776 4543 24568999999999999887763 21111111
Q ss_pred cc--cccccCCCCCCchhHHHHHHHHHHHc
Q 010631 410 QK--KVYSNLEGDRSHVVNTAWAMLALIDA 437 (505)
Q Consensus 410 ~~--~~y~~~~~~~s~~~~Ta~ALlaL~~a 437 (505)
.. ..|.......++++.-+.++.+|+.+
T Consensus 320 ~~~~~g~~~~~~~~~~~~~q~~g~g~~~la 349 (357)
T COG4225 320 GHDLDGYRDYYPSRPTPYGQALGLGALLLA 349 (357)
T ss_pred ccccccccccccCccccCCcchhhHHHHHH
Confidence 10 01110001356667777888777654
No 88
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=59.59 E-value=1.9e+02 Score=28.81 Aligned_cols=188 Identities=10% Similarity=-0.013 Sum_probs=86.5
Q ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCC-cccCCCCCCchhhHHHHHHhHHhhh
Q 010631 166 AFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPF-STADHGWPISDCTSEGLKASLLLSK 244 (505)
Q Consensus 166 a~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f-~~~~~~~pd~d~Ta~al~aL~~~~~ 244 (505)
.+++..+.+. -.+++.+.+.++.++|.+....+ .++. .|.- .....+ -...++-++.+|+.+.+
T Consensus 89 ~~~ll~l~~~-~~~~~l~~a~~~~~~l~~~~~~~---~~~~---------~~~~~~~~~~G--~~hG~aGi~~~L~~l~~ 153 (321)
T cd04791 89 GLALLYFART-GDPALLEAAAKIAELLAEALERG---DPAL---------LWPDFDRVDHG--LLHGWAGIALFLLRLYK 153 (321)
T ss_pred HHHHHHHHhc-CChHHHHHHHHHHHHHHHHhhcc---cccc---------ccccCCCCCCc--cccCcHHHHHHHHHHHH
Confidence 3444444444 34456778889999998775432 1211 1100 000111 12334545555554443
Q ss_pred ccccccCCccchHHHHHHHHHHHhccc-CCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhh
Q 010631 245 LSSAIVGEPIETKRLYDSVNVIFSLQN-ADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKL 323 (505)
Q Consensus 245 ~~~~~~g~~~~~~~i~~Av~~Ll~~Qn-~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~ 323 (505)
.. +++...+...++++++.+... .++||... ..... ..+.....++-++.+|..+.+.
T Consensus 154 ~t----~d~~~l~~A~~~~~~~~~~~~~~~~g~~~~--~~~~~---------------~~~~wchG~aGi~~~l~~l~~~ 212 (321)
T cd04791 154 AT----GDSRYLELAEEALDKELARAVVDDGGLLQV--DEGAR---------------LLPYLCSGSAGLGLLMLRLEAI 212 (321)
T ss_pred HH----CCHHHHHHHHHHHHHHHHhhccCCCCceEc--CCCCc---------------cCcccCCCcHHHHHHHHHHHHh
Confidence 21 223344667778888776544 35676321 11000 0011123344455555555443
Q ss_pred CCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHHHHHHcCCCCC---CcHHHHHHHHHHHhccCCCC
Q 010631 324 YPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYS---NSSSIRKACEFLLSKQRPSG 400 (505)
Q Consensus 324 ~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~---~~~~i~ra~~~L~~~Q~~DG 400 (505)
.. .+++.+.++++++.+.+.- |. ..+..+|++=.+.+|..+..... ..+.+++..++|++.-..+|
T Consensus 213 ~~---d~~~~~~a~~~~~~~~~~~-----~~---~~~lchG~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (321)
T cd04791 213 TG---DKRWRDEADGIAHAALSSC-----YA---NPGLFSGTAGLGAHLNDLAAEGDNALYKAAAERLALYLIATADEIE 281 (321)
T ss_pred cC---CHHHHHHHHHHHHHHhhhh-----cc---CccccCCcHhHHHHHHhhcccccChHHHHHHHHHHHHhccccCCcc
Confidence 22 2345556666666665442 21 12344555544445544322211 23344455566665544444
No 89
>PLN02613 endoglucanase
Probab=58.30 E-value=2.8e+02 Score=30.28 Aligned_cols=165 Identities=13% Similarity=0.099 Sum_probs=74.6
Q ss_pred cchHHHHHHHHHHHHhcccCCCC---CCCcccccc--C------CCCCCCCCcccCCC---CCCchhhHHHHH-HhHHhh
Q 010631 179 EEYGATLKKAHKYIKDSQVLEDC---PGNLDFWYR--H------ISKGAWPFSTADHG---WPISDCTSEGLK-ASLLLS 243 (505)
Q Consensus 179 ~~~~~~l~~A~~~L~~~Q~~~~~---~Gd~~~~~~--~------~~~GgW~f~~~~~~---~pd~d~Ta~al~-aL~~~~ 243 (505)
+.+.+.+++++.|...+..-..+ .+.|+..-- + .-.|||- .-.++. .| .-.|+..|. +.....
T Consensus 25 ~~Y~~aL~~sl~Fy~~QRsG~lp~~~~~~Wr~ds~l~Dg~~~~~DlsGGwy-DAGD~~Ky~~p-~a~s~t~L~w~~~e~~ 102 (498)
T PLN02613 25 PDYGDALNKSILFFEGQRSGKLPTNQRVKWRADSALSDGKPENVNLTGGYY-DAGDNVKFGWP-MAFTVTLLSWAAIEYQ 102 (498)
T ss_pred chHHHHHHHHHHHHHHhcCcCCCcccCCCCcccccCCCcccCcccCCCCce-eCCCCceecCc-hHHHHHHHHHHHHHhH
Confidence 35778899999988776653322 234543211 1 1347772 222221 23 122222211 221111
Q ss_pred hccccccCCccchHHHHHHHHHHHhcccCCcceeeeeccc--ccchhcccCccc-ccCCc--cc--ccCCCcchHHHHHH
Q 010631 244 KLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMR--SYPWLEVLNPAE-TFGDI--VI--DYPCVECTSASIQA 316 (505)
Q Consensus 244 ~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~--~~~~l~~~~~~e-~f~~~--~~--d~~~~~~Ta~vl~a 316 (505)
.......+.+--.+.++=++|||++||..+|++-.--.+. .+.+. ..|-+ ...+. .+ +.+..+.|+.+..+
T Consensus 103 ~~~~s~~~~~d~ldeikw~lD~llkm~~~~~~~~~QVGdg~~dH~~W--~~Pe~~~~~R~~~~~t~~~pgTd~a~~~AAA 180 (498)
T PLN02613 103 NEISSVNQLGYLRSAIRWGTDFILRAHTSPTTLYTQVGDGNADHQCW--ERPEDMDTPRTLYKITSSSPGSEAAGEAAAA 180 (498)
T ss_pred HHHhhcCCchHHHHHHHHHHHHHHHhccCCCeEEEEeCCCCcccccc--CCccccCCCCeeEecCCCCCccHHHHHHHHH
Confidence 1111011122224667779999999998877774311111 11111 11111 01111 11 22445667666677
Q ss_pred HHHhhhhCCCCch---hhhHHHHHHHHHHHHHhc
Q 010631 317 LTSFKKLYPGHWQ---EDVDHCIKRAVKFIEKIQ 347 (505)
Q Consensus 317 L~~~~~~~~~~~~---~~i~~~i~rav~~L~~~Q 347 (505)
|+.....+.++.. ++.-...+++-+|..+..
T Consensus 181 LAaas~vfk~~D~~yA~~~L~~Ak~ly~~a~~~~ 214 (498)
T PLN02613 181 LAAASLVFKDVDSSYSSKLLNHARSLFEFADKYR 214 (498)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 7765554433221 223344556677777653
No 90
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=57.31 E-value=29 Score=37.96 Aligned_cols=80 Identities=14% Similarity=0.103 Sum_probs=52.2
Q ss_pred chHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCc-----------ccCCC--CccchHHHHHHHHHHc
Q 010631 309 CTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWY-----------GSWGV--CFTYGTWFGVKGLVAA 375 (505)
Q Consensus 309 ~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~-----------g~wg~--~~~y~T~~al~aL~~~ 375 (505)
.+++-|+|++......+ .++....+++.|+.|.+.|.+||-.+ ..|.. ...|.....+.||.+.
T Consensus 61 ~~g~wl~a~a~~~~~~~---D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~~ll~gl~~~ 137 (520)
T PF07944_consen 61 DVGKWLEAAAYAYAYTG---DPELKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLGKLLEGLIDY 137 (520)
T ss_pred cHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHhHHHHHHHHH
Confidence 46678888887655433 25677889999999999999998332 12433 1245555666666643
Q ss_pred ----CCCCCCcHHHHHHHHHH
Q 010631 376 ----GMNYSNSSSIRKACEFL 392 (505)
Q Consensus 376 ----G~~~~~~~~i~ra~~~L 392 (505)
|.. .--+.+.|..+|+
T Consensus 138 y~~tG~~-~~L~v~~k~ad~~ 157 (520)
T PF07944_consen 138 YEATGNE-RALDVATKLADWV 157 (520)
T ss_pred HHHHCcH-HHHHHHHHHHHHH
Confidence 333 2345667888998
No 91
>PF00723 Glyco_hydro_15: Glycosyl hydrolases family 15; InterPro: IPR011613 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 15 GH15 from CAZY comprises enzymes with several known activities; glucoamylase (3.2.1.3 from EC); alpha-glucosidase (3.2.1.20 from EC); glucodextranase (3.2.1.70 from EC). Glucoamylase (GA) catalyses the release of D-glucose from the non-reducing ends of starch and other oligo- or poly-saccharides. Studies of fungal GA have indicated 3 closely-clustered acidic residues that play a role in the catalytic mechanism []. This region is also conserved in a recently sequenced bacterial GA []. The 3D structure of the pseudo-tetrasaccharide acarbose complexed with glucoamylase II(471) from Aspergillus awamori var. X100 has been determined to 2.4A resolution []. The protein belongs to the mainly-alpha class, and contains 19 helices and 9 strands. This protein is found in higher organisms, and is represented by phosphorylase kinase subunits.; GO: 0004339 glucan 1,4-alpha-glucosidase activity, 0005976 polysaccharide metabolic process; PDB: 1GAI_A 1GAH_A 1LF6_B 1LF9_A 3EQA_A 1AYX_A 2F6D_A 2FBA_A 1DOG_A 1GLM_A ....
Probab=56.64 E-value=2e+02 Score=30.74 Aligned_cols=41 Identities=15% Similarity=-0.043 Sum_probs=25.4
Q ss_pred CCchhhHHHHHHhHHhhhccccccCCccchHH--HHHHHHHHHhc
Q 010631 227 PISDCTSEGLKASLLLSKLSSAIVGEPIETKR--LYDSVNVIFSL 269 (505)
Q Consensus 227 pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~--i~~Av~~Ll~~ 269 (505)
+-.|.||..+.++..+......+ .....+. |+..++|+.+.
T Consensus 123 ~Q~D~~gl~l~~l~~~~~~g~~~--~~~~~~~~~I~~~~~yi~~~ 165 (448)
T PF00723_consen 123 PQNDGPGLRLLALWQYIDSGLQI--IYTYWEVSFIKNDLDYIERN 165 (448)
T ss_dssp -BTHHHHHHHHHHHHHHHTTHHH--HHTHHHHHTHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHcCCCc--ccccchhHHHHHHHHHHHHH
Confidence 66899999999988763211000 0112344 89999999874
No 92
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=52.46 E-value=47 Score=33.96 Aligned_cols=95 Identities=19% Similarity=0.248 Sum_probs=63.2
Q ss_pred CCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhcc--ccCCCcccC-------CCCccchHHHHHHHHHHcC
Q 010631 306 CVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQE--LDGSWYGSW-------GVCFTYGTWFGVKGLVAAG 376 (505)
Q Consensus 306 ~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~--~DG~W~g~w-------g~~~~y~T~~al~aL~~~G 376 (505)
.+-.+++.|-+++..... . .++..+.++++++||.+... .+|+|+-.. +....|..++++.||+.+.
T Consensus 19 ~~~~q~R~~~~fa~a~~~-g---~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~~~~~~~~Y~~af~l~ala~~~ 94 (346)
T PF07221_consen 19 RLWVQARQLYTFARAYRL-G---RPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGPLDPQKDLYDQAFALLALAEAR 94 (346)
T ss_dssp EHHHHHHHHHHHHHHHHT-T---SHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEEEE--EEHHHHHHHHHHHHHHH
T ss_pred eeeeeHHHHHHHHHHHhc-C---chhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCCCccccchHHHHHHHHHHHHHH
Confidence 345788999888876652 2 24466789999999999884 558886321 2235788999999998853
Q ss_pred CCC--CCcHHHHHHHHHHHhcc-CCC-CCCCc
Q 010631 377 MNY--SNSSSIRKACEFLLSKQ-RPS-GGWGE 404 (505)
Q Consensus 377 ~~~--~~~~~i~ra~~~L~~~Q-~~D-GgWge 404 (505)
... ...+.+++++++|.++. +++ |++.+
T Consensus 95 ~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~ 126 (346)
T PF07221_consen 95 ATGDPEALELAEQTLEFLERRFWDPEGGGYRE 126 (346)
T ss_dssp CTT-TTHHHHHHHHHHHHHHHTEETTTTEE--
T ss_pred HhCChhHHHHHHHHHHHHHHHhcccccCccee
Confidence 321 33456677888988875 454 45444
No 93
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=49.27 E-value=2.4e+02 Score=28.77 Aligned_cols=42 Identities=17% Similarity=0.277 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCCCCCC
Q 010631 426 NTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQE 467 (505)
Q Consensus 426 ~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~w~~~ 467 (505)
-.+++|+.+......+.-.+.++++++|+.+.+.++|.|+..
T Consensus 169 GI~~~L~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~g~w~~~ 210 (343)
T cd04794 169 GILYILLQTPLFLLKPSLAPLIKRSLDYLLSLQFPSGNFPSS 210 (343)
T ss_pred HHHHHHHhhhhhcCCccHHHHHHHHHHHHHHhhccCCCCCCc
Confidence 356666666554222212246999999999998889999764
No 94
>PLN02340 endoglucanase
Probab=43.05 E-value=5.3e+02 Score=29.00 Aligned_cols=166 Identities=11% Similarity=0.009 Sum_probs=73.5
Q ss_pred cchHHHHHHHHHHHHhcccCCCC---CCCccccc--cC------CCCCCCCCcccCCC---CCCchhhHHHHHHhHHhhh
Q 010631 179 EEYGATLKKAHKYIKDSQVLEDC---PGNLDFWY--RH------ISKGAWPFSTADHG---WPISDCTSEGLKASLLLSK 244 (505)
Q Consensus 179 ~~~~~~l~~A~~~L~~~Q~~~~~---~Gd~~~~~--~~------~~~GgW~f~~~~~~---~pd~d~Ta~al~aL~~~~~ 244 (505)
.++.+++++++.|...+..-..+ .+.|+... .+ .-.|||- .-.++. .|-.-.+..-+.+......
T Consensus 29 ~nY~~aL~~Sl~Fy~aQRsG~Lp~~~~~~WR~ds~l~Dg~~~~~DlsGGwy-DAGD~vKf~~p~a~t~t~L~w~~~ef~~ 107 (614)
T PLN02340 29 FNYGGALDKTLLFFEAQRSGKLPANQRVKWRGDSGLKDGFLQGVDLVGGYY-DAGDHVKFGLPMAFAVTMLSWGAVDFRK 107 (614)
T ss_pred CcHHHHHHHHHHHHHHhcCcCCCccCCCcccccccCCCcccccCCCCCCce-eCCCcceecchhHHHHHHHHHHHHHHHH
Confidence 46889999999999887664321 23354221 11 1246662 111111 1311111111112222211
Q ss_pred ccccccCCccchHHHHHHHHHHHhcccCCcceeee--ecccccchhcccCcccc-cCC----cccccCCCcchHHHHHHH
Q 010631 245 LSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATY--ELMRSYPWLEVLNPAET-FGD----IVIDYPCVECTSASIQAL 317 (505)
Q Consensus 245 ~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~--~~~~~~~~l~~~~~~e~-f~~----~~~d~~~~~~Ta~vl~aL 317 (505)
......+.+--.+.++=++|||++||.+++.+-.- +.+.++.+.. +|-+. -.+ +..+.+..++++....||
T Consensus 108 ~~~~~~~~~~~ldeirw~~Dyllk~~~~~~~~~~qVGdg~~DH~~W~--~PE~~~~~R~~y~i~~~~pgSd~a~e~AAAl 185 (614)
T PLN02340 108 EITALNQMQRTLWAIRWGTDYFIKAHTQPNVLWGQVGDGDSDHYCWE--RAEDMTTPRTAYKLDQNHPGSDLAGETAAAL 185 (614)
T ss_pred HhhhcCChHHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCcccccCC--ChhhcCCcCceeecCCCCCccHHHHHHHHHH
Confidence 11001111222467788999999999887665321 1111222111 11100 001 111224456666666666
Q ss_pred HHhhhhCCCCch---hhhHHHHHHHHHHHHHhc
Q 010631 318 TSFKKLYPGHWQ---EDVDHCIKRAVKFIEKIQ 347 (505)
Q Consensus 318 ~~~~~~~~~~~~---~~i~~~i~rav~~L~~~Q 347 (505)
+.....+.+... ++.-...+++-+|..+.+
T Consensus 186 Aaas~vfk~~D~~YA~~lL~~Ak~ly~fA~~~~ 218 (614)
T PLN02340 186 AAASKAFKPYNSSYSDLLLVHAKQLFSFADKFR 218 (614)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 665544332211 222334556677777655
No 95
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=40.63 E-value=1.5e+02 Score=33.23 Aligned_cols=130 Identities=19% Similarity=0.149 Sum_probs=68.0
Q ss_pred hhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceee-eecccccchhcccCcccccCCcccccCCCcc
Q 010631 231 CTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFAT-YELMRSYPWLEVLNPAETFGDIVIDYPCVEC 309 (505)
Q Consensus 231 ~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~-~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~ 309 (505)
|++.+..||..+. ..+...+..+|+...|+++|-|.. |..+.. ...+...+...+.. .-+--.+.
T Consensus 289 D~~~~~~AL~~~G-----------~~~~a~~~f~~l~~~~~~~~~~~~~y~~~g~-~~~~~w~~~~~~~~--~~pv~~~~ 354 (612)
T COG3387 289 DASYAALALLAIG-----------YKKEALRFFEFLPDVQTPNGKLYHKYSIDGS-DLAESWLPVSGYYN--SFPVRIGN 354 (612)
T ss_pred cHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhhCCCCceeeEEecCCC-ccccccccccCCCC--CCceEEcc
Confidence 4666667776443 356788899999999999987643 322221 11111111111111 01112466
Q ss_pred hHHHHHHHHHhhhhCCCC-ch-hhhHHHHHHHHHHHHH------hc-ccc-CCCcccCCCCccchHHHHHHHHHHc
Q 010631 310 TSASIQALTSFKKLYPGH-WQ-EDVDHCIKRAVKFIEK------IQ-ELD-GSWYGSWGVCFTYGTWFGVKGLVAA 375 (505)
Q Consensus 310 Ta~vl~aL~~~~~~~~~~-~~-~~i~~~i~rav~~L~~------~Q-~~D-G~W~g~wg~~~~y~T~~al~aL~~~ 375 (505)
|+.+.-+|...+....+. .. ......+.++..++.+ .. .|| |-|.+++| .++|.+..+..||.++
T Consensus 355 ~a~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~WEer~g-~~~yt~~~~~agLd~A 429 (612)
T COG3387 355 TALVQGALDVYGSIMNDIYFYAKYYAIYILPAADYLRRMEKIKANLPTPDFDLWEERGG-HFTYTKATVYAGLDAA 429 (612)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhhhcCCCCCccceecccCC-cccchHHHHHHHHHHH
Confidence 777777777644321100 00 0011234555555554 22 344 66777777 6788877777777654
No 96
>PLN02345 endoglucanase
Probab=39.37 E-value=4.5e+02 Score=28.49 Aligned_cols=90 Identities=10% Similarity=0.072 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHhcccCCcceeeee--cccccchhcccCcccc-cCC--cccc--cCCCcchHHHHHHHHHhhhhCCCCc
Q 010631 256 TKRLYDSVNVIFSLQNADGGFATYE--LMRSYPWLEVLNPAET-FGD--IVID--YPCVECTSASIQALTSFKKLYPGHW 328 (505)
Q Consensus 256 ~~~i~~Av~~Ll~~Qn~dGgw~~~~--~~~~~~~l~~~~~~e~-f~~--~~~d--~~~~~~Ta~vl~aL~~~~~~~~~~~ 328 (505)
.+.++-++|||++||..+|++-.-- .+.++.+. .+|-+. ..+ ..++ .+..+.|+.+..+|+.....+.+..
T Consensus 85 ldelkw~~Dyllk~~~~~~~~y~qVg~~~~Dh~~W--~~Pe~~~~~R~~~~~~~~~pgsd~a~~~AAAlA~as~vfk~~D 162 (469)
T PLN02345 85 KDSLKWITDYLINAHPSENVLYIQVGDPKLDHKCW--ERPETMDEKRPLTKINTSSPGSEVAAETAAAMAAASLVFKSSD 162 (469)
T ss_pred HHHHhHHHHHHHHhcCCCCeEEEEecCCCCCcccC--CChhhcCCcceEEecCCCCCCcHHHHHHHHHHHHHHHHhccCC
Confidence 3567789999999999999884211 11111111 112110 111 1122 2345667766677776554433221
Q ss_pred h---hhhHHHHHHHHHHHHHhc
Q 010631 329 Q---EDVDHCIKRAVKFIEKIQ 347 (505)
Q Consensus 329 ~---~~i~~~i~rav~~L~~~Q 347 (505)
. ++.-...+++-+|..+.+
T Consensus 163 ~~YA~~lL~~Ak~ly~fa~~~~ 184 (469)
T PLN02345 163 STYSDTLLKHAKQLFNFADKYR 184 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 1 223345566777887764
No 97
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=38.12 E-value=1.5e+02 Score=31.20 Aligned_cols=78 Identities=22% Similarity=0.359 Sum_probs=49.5
Q ss_pred chHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhh------HHHHHHhHHhhhccccccCCc
Q 010631 180 EYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCT------SEGLKASLLLSKLSSAIVGEP 253 (505)
Q Consensus 180 ~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~T------a~al~aL~~~~~~~~~~~g~~ 253 (505)
+..+.+..++.|+.+.-... .|||.|--.+.+-| +|.| |+||+|+..+... |.+
T Consensus 75 ~~~~~v~hG~~y~~~~~R~~--------------~gg~~~~~~~dg~~-~Dat~d~Y~haFallA~A~~a~a-----~~~ 134 (388)
T COG2942 75 PWLDAVAHGIAYLARVGRDP--------------EGGWYFALDNDGGP-VDATKDLYGHAFALLAAAHAATA-----GPP 134 (388)
T ss_pred cHHHHHHhHHHHHHhcCcCC--------------CCCeEEEecCCCCc-ccccHhHHHHHHHHHHHHHHHhc-----CCh
Confidence 36789999999998875542 28888766655533 5544 8888887665432 223
Q ss_pred cchHHHHHHHHHHHhc----ccCCccee
Q 010631 254 IETKRLYDSVNVIFSL----QNADGGFA 277 (505)
Q Consensus 254 ~~~~~i~~Av~~Ll~~----Qn~dGgw~ 277 (505)
.-.+....+.+.+... .++=+|+.
T Consensus 135 ~a~~~~~~a~~~l~~~~~~~~~pl~~~e 162 (388)
T COG2942 135 RADELLDEALDVLERRFWREEHPLGGFE 162 (388)
T ss_pred hHHHHHHHHHHHHHHHHhhhcCCccccc
Confidence 3346777787776554 33445553
No 98
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=37.77 E-value=1.1e+02 Score=31.36 Aligned_cols=81 Identities=19% Similarity=0.155 Sum_probs=46.7
Q ss_pred chHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCC-------CCccchHHHHHHHHHHcCCCC--
Q 010631 309 CTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWG-------VCFTYGTWFGVKGLVAAGMNY-- 379 (505)
Q Consensus 309 ~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg-------~~~~y~T~~al~aL~~~G~~~-- 379 (505)
.++-++.+|....... ..+++.+.++++++|+.+.+.++|.|+...+ +++-||+.=++.+|..+....
T Consensus 166 G~aGI~~~L~~~~~~~---~~~~~~~~i~~~i~~~~~~~~~~g~w~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~ 242 (343)
T cd04794 166 GLAGILYILLQTPLFL---LKPSLAPLIKRSLDYLLSLQFPSGNFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAYLVFKE 242 (343)
T ss_pred hHHHHHHHHHhhhhhc---CCccHHHHHHHHHHHHHHhhccCCCCCCccCCCCCCccccccCCCchHHHHHHHHHHHhCC
Confidence 3444555565554322 2245678899999999999988999875433 235566555555555443221
Q ss_pred -CCcHHHHHHHHHH
Q 010631 380 -SNSSSIRKACEFL 392 (505)
Q Consensus 380 -~~~~~i~ra~~~L 392 (505)
...+.++++.+.+
T Consensus 243 ~~~~~~~~~~~~~~ 256 (343)
T cd04794 243 EQYLEAAIKCGELI 256 (343)
T ss_pred HHHHHHHHHHHHHH
Confidence 1234444555544
No 99
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=36.88 E-value=68 Score=32.77 Aligned_cols=85 Identities=21% Similarity=0.287 Sum_probs=51.5
Q ss_pred cCCCCCCcHHHHHHHHHHHhccC--CCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCC--CCcHHHHHH
Q 010631 375 AGMNYSNSSSIRKACEFLLSKQR--PSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAE--TDPTPLHRA 450 (505)
Q Consensus 375 ~G~~~~~~~~i~ra~~~L~~~Q~--~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~--~d~~~i~rg 450 (505)
.|.+ ...+.++++++||.++.. ++|||--..... . ++ ....+.+..+++++||..+.... ...+.+++.
T Consensus 36 ~g~~-~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~--~---~~-~~~~~~Y~~af~l~ala~~~~tg~~~~~~~A~~~ 108 (346)
T PF07221_consen 36 LGRP-EYLELAEHGFDFLRKHFRDPEYGGWYRSLDDG--G---PL-DPQKDLYDQAFALLALAEARATGDPEALELAEQT 108 (346)
T ss_dssp TTSH-HHHHHHHHHHHHHHHTTBTTTTSSBSSEEETT--E---EE-E--EEHHHHHHHHHHHHHHHCTT-TTHHHHHHHH
T ss_pred cCch-hHHHHHHHHHHHHHHhcccCCCCCEEEEeCCC--C---CC-ccccchHHHHHHHHHHHHHHHhCChhHHHHHHHH
Confidence 4543 445678889999999885 568885433111 1 11 13567889999999999853221 112356788
Q ss_pred HHHHHhcC-cCC-CCCCC
Q 010631 451 ARYLINSQ-MEN-GDYPQ 466 (505)
Q Consensus 451 v~~L~~~Q-~~~-G~w~~ 466 (505)
+++|.++- .++ |++.+
T Consensus 109 ~~~l~~~~~d~~~g~~~~ 126 (346)
T PF07221_consen 109 LEFLERRFWDPEGGGYRE 126 (346)
T ss_dssp HHHHHHHTEETTTTEE--
T ss_pred HHHHHHHhcccccCccee
Confidence 88998874 443 55443
No 100
>PLN02909 Endoglucanase
Probab=34.56 E-value=6.4e+02 Score=27.48 Aligned_cols=164 Identities=12% Similarity=0.040 Sum_probs=76.0
Q ss_pred chHHHHHHHHHHHHhcccCCCCC---CCccccc--cC------CCCCCCCCcccCCC---CCCchhhHHHH-HHhHHhhh
Q 010631 180 EYGATLKKAHKYIKDSQVLEDCP---GNLDFWY--RH------ISKGAWPFSTADHG---WPISDCTSEGL-KASLLLSK 244 (505)
Q Consensus 180 ~~~~~l~~A~~~L~~~Q~~~~~~---Gd~~~~~--~~------~~~GgW~f~~~~~~---~pd~d~Ta~al-~aL~~~~~ 244 (505)
++.++|++++.|...++.-+.++ ..|+... .+ ...|||- .-.++. .|- -.|+..| .+......
T Consensus 34 nY~~aL~~sl~Fy~aQRsG~lp~~~~~~Wr~ds~l~Dg~~~~~DlsGGwy-DAGD~~Kf~~p~-a~s~~~L~w~~~~y~~ 111 (486)
T PLN02909 34 NYKDALTKSIIFLEAQRSGKLPPNNRVPWRGDSALDDGKLANVDLVGGYY-DAGDNVKYGLPM-AFTVTTLAWSTLAYEK 111 (486)
T ss_pred cHHHHHHHHHHHHHHhcCcCCCCCCCCCCCcccccccCCccccCCCCCce-eCCCCceeCCch-HHHHHHHHHHHHHhHH
Confidence 58899999999998887654321 2243211 01 1346772 211211 231 1122211 12222211
Q ss_pred ccccccCCccchHHHHHHHHHHHhcccCCcceeeee--cccccchhcccCcccc-cCC--ccc--ccCCCcchHHHHHHH
Q 010631 245 LSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYE--LMRSYPWLEVLNPAET-FGD--IVI--DYPCVECTSASIQAL 317 (505)
Q Consensus 245 ~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~--~~~~~~~l~~~~~~e~-f~~--~~~--d~~~~~~Ta~vl~aL 317 (505)
......+.+-..+.++-++|||++||..+|++-.-- .+.++.+. .+|-+. ..+ ..+ ..+..++|+....+|
T Consensus 112 ~~~~~g~~~d~ldeikw~~D~llk~~~~~~~~y~qVg~~~~Dh~~W--~~Pe~~~~~R~~~~i~~~~pgtd~a~~~AAAl 189 (486)
T PLN02909 112 ELRATGELENVRAAIRWGTDYFLKAASRKNRLYVQVGDPNLDHQCW--VRPENMKTPRTVLEIDEKTPGTEIAAETAAAM 189 (486)
T ss_pred HHhhcCChHHHHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCcccC--CChhhccCCceeEecCCCCCCcHHHHHHHHHH
Confidence 111111122234677889999999999998874211 11122110 111110 001 012 224456777777777
Q ss_pred HHhhhhCCCCch---hhhHHHHHHHHHHHHHhc
Q 010631 318 TSFKKLYPGHWQ---EDVDHCIKRAVKFIEKIQ 347 (505)
Q Consensus 318 ~~~~~~~~~~~~---~~i~~~i~rav~~L~~~Q 347 (505)
+.....+.+... ++.-...+++-+|..+..
T Consensus 190 A~as~vfk~~D~~yA~~lL~~Ak~~y~fA~~~~ 222 (486)
T PLN02909 190 AASSMVFRHVDHKYSRRLLNKAKLLFKFAKAHK 222 (486)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 775544333221 122334456677777654
No 101
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=33.14 E-value=28 Score=36.19 Aligned_cols=23 Identities=26% Similarity=0.653 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhccCCCCCCCcC
Q 010631 383 SSIRKACEFLLSKQRPSGGWGES 405 (505)
Q Consensus 383 ~~i~ra~~~L~~~Q~~DGgWge~ 405 (505)
.+.-.|.+||...|++-|||...
T Consensus 380 aaFyaAadWlV~NQd~kGGW~~p 402 (594)
T KOG3760|consen 380 AAFYAAADWLVKNQDDKGGWSVP 402 (594)
T ss_pred HHHHHHHHHHhhCCCCCCCCcch
Confidence 34556899999999999999753
No 102
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=32.32 E-value=5.1e+02 Score=25.69 Aligned_cols=102 Identities=7% Similarity=-0.137 Sum_probs=51.8
Q ss_pred chHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHH
Q 010631 255 ETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDH 334 (505)
Q Consensus 255 ~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~ 334 (505)
..+...++.++|.+....+..+..+.... .........++-++.+|..+.+... .+++.+
T Consensus 103 ~l~~a~~~~~~l~~~~~~~~~~~~~~~~~-----------------~~~~G~~hG~aGi~~~L~~l~~~t~---d~~~l~ 162 (321)
T cd04791 103 LLEAAAKIAELLAEALERGDPALLWPDFD-----------------RVDHGLLHGWAGIALFLLRLYKATG---DSRYLE 162 (321)
T ss_pred HHHHHHHHHHHHHHHhhccccccccccCC-----------------CCCCccccCcHHHHHHHHHHHHHHC---CHHHHH
Confidence 45677888888877544333332221000 0011223455666667766554322 234556
Q ss_pred HHHHHHHHHHHhccc-cCCCccc-----CCCCccchHHHHHHHHHHcC
Q 010631 335 CIKRAVKFIEKIQEL-DGSWYGS-----WGVCFTYGTWFGVKGLVAAG 376 (505)
Q Consensus 335 ~i~rav~~L~~~Q~~-DG~W~g~-----wg~~~~y~T~~al~aL~~~G 376 (505)
.+.++++++.+...+ +++|+-. --....+|++=++.+|....
T Consensus 163 ~A~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~wchG~aGi~~~l~~l~ 210 (321)
T cd04791 163 LAEEALDKELARAVVDDGGLLQVDEGARLLPYLCSGSAGLGLLMLRLE 210 (321)
T ss_pred HHHHHHHHHHHhhccCCCCceEcCCCCccCcccCCCcHHHHHHHHHHH
Confidence 778888888776543 4566411 01124456555555555443
No 103
>PF11329 DUF3131: Protein of unknown function (DUF3131); InterPro: IPR021478 This bacterial family of proteins has no known function.
Probab=29.83 E-value=4.6e+02 Score=27.45 Aligned_cols=91 Identities=20% Similarity=0.219 Sum_probs=56.4
Q ss_pred CchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceee--eecccccchhcccC-cccccCCccccc
Q 010631 228 ISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFAT--YELMRSYPWLEVLN-PAETFGDIVIDY 304 (505)
Q Consensus 228 d~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~--~~~~~~~~~l~~~~-~~e~f~~~~~d~ 304 (505)
...+++.-|.|++.+.+.. ++....-++++.+.+..|.++..-+|+.+. |..... ..++..+ |.+. +..
T Consensus 32 T~wdiG~yL~al~AA~~lg--lIs~~e~~~Rl~~~L~tL~~lpl~~g~lPn~~Y~t~T~-~~~~~~~~p~~~-----~gw 103 (367)
T PF11329_consen 32 TMWDIGSYLMALVAARELG--LISREEFDQRLEKTLATLEKLPLFRGHLPNKWYNTQTG-QPVDYGNQPGER-----IGW 103 (367)
T ss_pred ChHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHhCcccCCcCccceeecCcC-cccccCCCCCcc-----CCc
Confidence 4567888899988776542 222333468899999999999998998743 432221 1111111 1110 223
Q ss_pred CCCcchHHHHHHHHHhhhhCCCC
Q 010631 305 PCVECTSASIQALTSFKKLYPGH 327 (505)
Q Consensus 305 ~~~~~Ta~vl~aL~~~~~~~~~~ 327 (505)
|.+| .++.+.+|......+|.+
T Consensus 104 SavD-~GrLl~~L~il~~~~P~~ 125 (367)
T PF11329_consen 104 SAVD-IGRLLIALRILKQRYPEY 125 (367)
T ss_pred cHhh-HHHHHHHHHHHHHHCchH
Confidence 4343 678899999988777765
No 104
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=29.15 E-value=1.3e+02 Score=28.36 Aligned_cols=100 Identities=18% Similarity=0.120 Sum_probs=50.4
Q ss_pred cCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcH---HHHHHHHHHHhcCcCCCCCCCCcccce
Q 010631 396 QRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPT---PLHRAARYLINSQMENGDYPQEEIMGV 472 (505)
Q Consensus 396 Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~---~i~rgv~~L~~~Q~~~G~w~~~~~~g~ 472 (505)
|.++|||.-...-........++.+--....-+.|+..|.+|-..-.|++ +.+++++.+.- ..++|+.......
T Consensus 1 qd~~g~w~~~~~~~~~~~~~~l~~gW~SamaQG~a~s~l~RAy~~t~d~~Yl~aA~~al~~f~~-~~~~GG~~~~~~~-- 77 (189)
T PF06662_consen 1 QDESGGWPYNFDYKLYEGNEVLSPGWYSAMAQGQAISVLARAYQLTGDEKYLDAAKKALNSFKV-PVEEGGVLATFKN-- 77 (189)
T ss_pred CCCcCccceeeeeccccCcccCCCCcHhHHHHHHHHHHHHHHHHhHCCHHHHHHHHHHHHHhcC-hHhhCCeeEEecC--
Confidence 77899997543211100000011122233445677777777644322343 44555554433 2344554332111
Q ss_pred eccccccccCCch-------hhHHHHHHHHHHHH
Q 010631 473 FNRNCMISYSAYR-------NIFPIWALGEYRCR 499 (505)
Q Consensus 473 f~~~~~~~y~~y~-------~~fpl~AL~~y~~~ 499 (505)
-..+|..||.=+ ++|.|..|-.|...
T Consensus 78 -~~~wyeEYp~~p~s~VLNGfiysL~GLyd~~~~ 110 (189)
T PF06662_consen 78 -KYPWYEEYPTTPPSYVLNGFIYSLIGLYDYYRL 110 (189)
T ss_pred -CcEeEeecCCCCCCEEeehHHHHHHHHHHHHHh
Confidence 045566666433 67899999888744
No 105
>PLN03009 cellulase
Probab=27.12 E-value=2.9e+02 Score=30.21 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=20.0
Q ss_pred hhhhHHHHHHHHHHHHHhccccCCCc
Q 010631 329 QEDVDHCIKRAVKFIEKIQELDGSWY 354 (505)
Q Consensus 329 ~~~i~~~i~rav~~L~~~Q~~DG~W~ 354 (505)
.+++.+.|+=+++||++.|.++|..+
T Consensus 112 ~~diLdeikw~~D~llkm~~~~~~~y 137 (495)
T PLN03009 112 LRNSLVAIRWATDYLLKTVSQPNRIF 137 (495)
T ss_pred cHHHHHHHHHHHHHHHHcccCcCeEE
Confidence 35567788889999999987766554
No 106
>PLN02308 endoglucanase
Probab=24.56 E-value=8.2e+02 Score=26.68 Aligned_cols=88 Identities=11% Similarity=0.061 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhcccCCcceeeeeccc---ccchhcccCcccc-cCC--cccc--cCCCcchHHHHHHHHHhhhhCCCCc
Q 010631 257 KRLYDSVNVIFSLQNADGGFATYELMR---SYPWLEVLNPAET-FGD--IVID--YPCVECTSASIQALTSFKKLYPGHW 328 (505)
Q Consensus 257 ~~i~~Av~~Ll~~Qn~dGgw~~~~~~~---~~~~l~~~~~~e~-f~~--~~~d--~~~~~~Ta~vl~aL~~~~~~~~~~~ 328 (505)
+.++-++|||++||.++|++-. .... ++.+. .+|-+. -.+ ..++ .+..+.|+....+|+.....+.+..
T Consensus 116 deikw~~D~llkm~~~~~~vy~-qVg~~~~dh~~W--~~Pe~~~~~R~~y~~~~~~pgSd~a~~~AAAlA~as~vf~~~D 192 (492)
T PLN02308 116 KAVKWATDYLMKATAIPNVVYV-QVGDAYSDHNCW--ERPEDMDTLRTVYKIDPSHPGSDVAGETAAALAAASIVFRKRD 192 (492)
T ss_pred HHHHHHHHHHHHhcCCCCeEEE-EecCCCCCccCC--CChhHcCCcceEEecCCCCCcchHHHHHHHHHHHHHHhccccC
Confidence 5678889999999999998732 2211 11110 111110 011 1121 2334567776677777655433221
Q ss_pred h---hhhHHHHHHHHHHHHHhc
Q 010631 329 Q---EDVDHCIKRAVKFIEKIQ 347 (505)
Q Consensus 329 ~---~~i~~~i~rav~~L~~~Q 347 (505)
. ++.-...+++-+|..+.+
T Consensus 193 ~~YA~~lL~~Ak~ly~fa~~~~ 214 (492)
T PLN02308 193 PAYSRLLLDRAVRVFAFADKYR 214 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 1 223344566778888765
No 107
>PLN03009 cellulase
Probab=20.22 E-value=1.1e+03 Score=25.60 Aligned_cols=89 Identities=7% Similarity=0.077 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHhcccCCcceeeeeccc---ccchhcccCccc-ccCCc--cccc--CCCcchHHHHHHHHHhhhhCCCC
Q 010631 256 TKRLYDSVNVIFSLQNADGGFATYELMR---SYPWLEVLNPAE-TFGDI--VIDY--PCVECTSASIQALTSFKKLYPGH 327 (505)
Q Consensus 256 ~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~---~~~~l~~~~~~e-~f~~~--~~d~--~~~~~Ta~vl~aL~~~~~~~~~~ 327 (505)
.+.++=++|||++||.++|++-. .... ++.+. .+|-+ ...+. .++. +..++|+.+..+|+.....+.+.
T Consensus 116 Ldeikw~~D~llkm~~~~~~~y~-qVg~~~~Dh~~W--~~Pe~~~~~R~~~~is~~~p~sd~a~~~AAalA~as~vfk~~ 192 (495)
T PLN03009 116 LVAIRWATDYLLKTVSQPNRIFV-QVGDPIADHNCW--ERPEDMDTPRTVYAVNAPNPASDVAGETAAALAASSMAFRSS 192 (495)
T ss_pred HHHHHHHHHHHHHcccCcCeEEE-EeCCCCCCcccC--cChhhcCCCCeEEEecCCCCccHHHHHHHHHHHHHHHhcccc
Confidence 35667789999999988888742 2111 11110 11211 01111 2222 22455666666676655443322
Q ss_pred ch---hhhHHHHHHHHHHHHHhc
Q 010631 328 WQ---EDVDHCIKRAVKFIEKIQ 347 (505)
Q Consensus 328 ~~---~~i~~~i~rav~~L~~~Q 347 (505)
.. ++.-...+++-+|..+.+
T Consensus 193 D~~YA~~ll~~Ak~ly~~a~~~~ 215 (495)
T PLN03009 193 DPGYSETLLRNAIKTFQFADMYR 215 (495)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcC
Confidence 11 122334566777887654
Done!