Query 010631
Match_columns 505
No_of_seqs 386 out of 2055
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 10:56:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010631.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010631hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w6k_A Lanosterol synthase; cy 100.0 1.1E-97 4E-102 829.1 42.9 493 1-504 229-727 (732)
2 2sqc_A Squalene-hopene cyclase 100.0 4.5E-83 1.5E-87 704.1 40.1 457 1-501 166-629 (631)
3 2sqc_A Squalene-hopene cyclase 100.0 1.9E-31 6.5E-36 293.4 24.5 305 86-437 280-624 (631)
4 2h6f_B Protein farnesyltransfe 100.0 1.3E-29 4.6E-34 265.1 14.7 223 185-478 75-300 (437)
5 3dss_B Geranylgeranyl transfer 99.9 1E-25 3.4E-30 228.6 18.9 280 134-496 20-301 (331)
6 1n4q_B Geranyltransferase type 99.9 5.8E-26 2E-30 233.3 16.3 212 229-478 48-272 (377)
7 1w6k_A Lanosterol synthase; cy 99.9 3.9E-25 1.3E-29 246.1 19.9 314 86-437 355-719 (732)
8 1r76_A Pectate lyase; A-helica 99.9 1.3E-25 4.5E-30 228.8 12.3 202 183-404 81-335 (408)
9 3dss_B Geranylgeranyl transfer 99.9 6E-25 2.1E-29 222.8 16.9 205 228-495 46-251 (331)
10 2wy7_A Complement C3D fragment 99.9 6.7E-25 2.3E-29 221.5 15.8 199 257-502 54-295 (310)
11 1qqf_A Protein (complement C3D 99.9 3.1E-24 1.1E-28 213.1 18.6 197 256-499 37-276 (277)
12 1gxm_A Pectate lyase; mechanis 99.9 1.9E-24 6.4E-29 214.5 9.9 186 189-397 37-251 (332)
13 3q7a_B Farnesyltransferase bet 99.9 3.7E-23 1.3E-27 217.0 17.9 202 253-479 105-327 (520)
14 2h6f_B Protein farnesyltransfe 99.9 6.2E-23 2.1E-27 214.7 18.5 286 134-497 75-374 (437)
15 1hzf_A Complement factor C4A; 99.9 5.8E-22 2E-26 204.4 23.0 296 136-501 42-364 (367)
16 1n4q_B Geranyltransferase type 99.8 3.1E-20 1.1E-24 190.8 19.8 292 134-496 22-332 (377)
17 4acq_A Alpha-2-macroglobulin; 99.8 3.8E-18 1.3E-22 202.5 21.7 270 165-502 960-1247(1451)
18 1qqf_A Protein (complement C3D 99.8 3.7E-18 1.3E-22 169.3 17.8 201 181-437 36-273 (277)
19 2wy7_A Complement C3D fragment 99.8 1.3E-17 4.5E-22 168.0 18.1 220 162-437 25-289 (310)
20 2pn5_A TEP1R, thioester-contai 99.8 2E-18 6.9E-23 204.8 13.2 197 257-501 872-1106(1325)
21 2hr0_B Complement C3 alpha' ch 99.7 9.3E-18 3.2E-22 192.0 17.2 200 257-502 299-540 (915)
22 3q7a_B Farnesyltransferase bet 99.7 2.7E-16 9.2E-21 165.1 18.8 294 134-499 63-424 (520)
23 1r76_A Pectate lyase; A-helica 99.6 1.7E-15 5.7E-20 154.6 15.6 203 257-466 81-335 (408)
24 1hzf_A Complement factor C4A; 99.6 5.8E-16 2E-20 159.5 10.9 197 214-466 51-276 (367)
25 4fxk_B Complement C4-A alpha c 99.6 1E-13 3.5E-18 156.0 26.7 279 160-501 337-641 (767)
26 2hr0_B Complement C3 alpha' ch 99.5 3.3E-13 1.1E-17 154.4 17.0 250 129-437 238-534 (915)
27 2b39_A C3; thioester, immune d 99.4 7.4E-12 2.5E-16 151.3 23.2 263 160-502 1015-1287(1661)
28 3prx_B Cobra venom factor; imm 99.4 3.8E-14 1.3E-18 169.2 0.0 222 215-502 1047-1269(1642)
29 1gxm_A Pectate lyase; mechanis 99.4 2.1E-13 7.2E-18 135.4 4.4 169 159-349 70-252 (332)
30 3dra_B Geranylgeranyltransfera 99.4 6.7E-11 2.3E-15 121.3 22.4 309 134-498 6-362 (390)
31 3cu7_A Complement C5; Mg domai 99.3 4.8E-11 1.7E-15 144.4 24.5 234 215-502 1064-1306(1676)
32 2pn5_A TEP1R, thioester-contai 99.3 9.6E-12 3.3E-16 147.7 17.1 216 160-437 844-1101(1325)
33 4acq_A Alpha-2-macroglobulin; 99.3 1.5E-11 5.1E-16 146.3 18.0 166 257-467 983-1163(1451)
34 3dra_B Geranylgeranyltransfera 99.3 1.2E-11 4.2E-16 126.8 14.9 189 230-459 33-252 (390)
35 2bb6_A TCII, TC II, transcobal 98.9 2.7E-08 9.3E-13 102.1 16.2 146 231-439 138-286 (414)
36 2pmv_A Gastric intrinsic facto 98.9 7E-09 2.4E-13 105.9 11.2 128 258-440 131-263 (399)
37 4fxk_B Complement C4-A alpha c 98.8 2.4E-07 8.2E-12 104.1 22.0 232 134-437 370-636 (767)
38 2bb6_A TCII, TC II, transcobal 98.8 4.4E-08 1.5E-12 100.5 14.4 148 159-375 133-284 (414)
39 2b39_A C3; thioester, immune d 98.7 3.8E-07 1.3E-11 110.4 18.8 225 134-437 1048-1281(1661)
40 3cu7_A Complement C5; Mg domai 98.5 1E-06 3.5E-11 106.8 18.1 228 134-437 1049-1300(1676)
41 2pmv_A Gastric intrinsic facto 98.5 4.6E-07 1.6E-11 92.5 10.5 122 309-467 116-247 (399)
42 3prx_B Cobra venom factor; imm 98.1 4.8E-07 1.6E-11 108.4 0.0 214 134-376 1032-1264(1642)
43 3k11_A Putative glycosyl hydro 97.8 0.00054 1.9E-08 71.5 17.8 294 163-501 82-415 (445)
44 3pya_A ENT-copalyl diphosphate 97.8 0.00018 6.3E-09 79.1 14.0 90 337-440 220-311 (727)
45 3pmm_A Putative cytoplasmic pr 97.5 0.0045 1.6E-07 63.4 19.4 221 251-500 127-381 (382)
46 3s9v_A Abietadiene synthase, c 97.5 0.0014 4.8E-08 72.9 15.4 90 337-440 245-336 (785)
47 3sdr_A Alpha-bisabolene syntha 97.3 0.0046 1.6E-07 69.1 17.4 90 337-440 273-364 (817)
48 3p5p_A Taxadiene synthase; cla 97.3 0.0058 2E-07 67.9 17.3 240 127-441 48-313 (764)
49 3sdr_A Alpha-bisabolene syntha 97.3 0.00049 1.7E-08 77.0 8.7 105 336-458 56-163 (817)
50 3s9v_A Abietadiene synthase, c 97.2 0.00061 2.1E-08 75.8 8.2 101 336-457 33-135 (785)
51 1nc5_A Hypothetical protein YT 97.1 0.014 4.9E-07 59.4 17.5 183 308-500 143-368 (373)
52 3p5p_A Taxadiene synthase; cla 97.1 0.00065 2.2E-08 75.4 7.6 104 335-458 9-115 (764)
53 3pya_A ENT-copalyl diphosphate 97.0 0.0018 6E-08 71.3 9.1 82 359-458 31-112 (727)
54 3pmm_A Putative cytoplasmic pr 96.9 0.046 1.6E-06 55.9 19.2 78 256-355 262-341 (382)
55 2gz6_A N-acetyl-D-glucosamine 96.2 0.12 4.1E-06 52.4 16.2 149 160-347 50-208 (388)
56 3gt5_A N-acetylglucosamine 2-e 95.5 0.87 3E-05 46.5 19.6 149 160-346 49-208 (402)
57 1nc5_A Hypothetical protein YT 95.5 0.65 2.2E-05 47.0 18.4 129 309-437 214-364 (373)
58 3k11_A Putative glycosyl hydro 95.5 0.62 2.1E-05 48.4 18.2 216 159-406 141-375 (445)
59 1lf6_A Glucoamylase; (alpha/al 95.4 0.85 2.9E-05 50.1 20.2 251 163-467 343-637 (684)
60 2gz6_A N-acetyl-D-glucosamine 95.4 0.049 1.7E-06 55.3 9.5 129 257-402 15-158 (388)
61 1ulv_A Glucodextranase; GH fam 94.4 0.69 2.4E-05 53.1 16.3 89 162-269 331-420 (1020)
62 2fba_A Glucoamylase Glu1; (alp 94.0 1.5 5.3E-05 46.0 17.1 101 162-270 68-201 (492)
63 2vn4_A Glucoamylase; hydrolase 92.5 13 0.00045 39.9 21.8 99 162-272 52-172 (599)
64 2zbl_A Putative isomerase; N-a 92.4 4.5 0.00015 41.3 17.3 152 160-347 48-208 (421)
65 2ahf_A Unsaturated glucuronyl 92.4 2.2 7.4E-05 43.3 14.5 192 161-375 145-364 (377)
66 2ahf_A Unsaturated glucuronyl 91.5 2.7 9.2E-05 42.6 14.1 220 252-499 106-367 (377)
67 3gt5_A N-acetylglucosamine 2-e 91.1 0.85 2.9E-05 46.6 10.0 130 257-403 13-157 (402)
68 2zzr_A Unsaturated glucuronyl 89.7 5 0.00017 40.9 14.2 217 134-375 139-389 (397)
69 1fp3_A N-acyl-D-glucosamine 2- 89.5 11 0.00037 38.0 16.8 102 159-277 52-167 (402)
70 2zzr_A Unsaturated glucuronyl 88.3 9.3 0.00032 38.9 15.1 220 252-498 132-391 (397)
71 1gai_A Glucoamylase-471; hydro 86.1 29 0.00098 36.1 17.5 92 162-270 53-169 (472)
72 3h7l_A Endoglucanase; dehydrog 85.0 2.8 9.5E-05 44.9 9.3 86 257-347 194-291 (586)
73 1lf6_A Glucoamylase; (alpha/al 84.0 5.7 0.00019 43.5 11.6 125 333-467 295-440 (684)
74 1ulv_A Glucodextranase; GH fam 83.9 12 0.0004 43.0 14.4 127 331-467 281-432 (1020)
75 2fba_A Glucoamylase Glu1; (alp 80.9 3.5 0.00012 43.3 8.0 130 229-374 68-229 (492)
76 1fp3_A N-acyl-D-glucosamine 2- 80.7 4.4 0.00015 40.9 8.6 129 258-402 18-166 (402)
77 3h7l_A Endoglucanase; dehydrog 79.0 20 0.00069 38.3 13.2 169 310-501 164-380 (586)
78 2vn4_A Glucoamylase; hydrolase 75.3 3.8 0.00013 44.2 6.4 123 229-374 52-198 (599)
79 2zbl_A Putative isomerase; N-a 75.0 19 0.00064 36.6 11.4 129 257-405 15-157 (421)
80 3ren_A Glycosyl hydrolase, fam 71.9 67 0.0023 31.9 14.0 267 165-496 65-348 (350)
81 3rrs_A Cellobiose phosphorylas 71.7 96 0.0033 34.5 16.9 85 256-351 381-479 (822)
82 3k7x_A LIN0763 protein; Q92DQ0 70.0 43 0.0015 33.2 12.3 165 161-375 44-225 (349)
83 1ks8_A Endo-B-1,4-glucanase; c 66.2 1.2E+02 0.0041 30.9 18.2 90 256-347 93-192 (433)
84 3rrs_A Cellobiose phosphorylas 64.9 1.8E+02 0.006 32.4 18.7 102 161-274 365-479 (822)
85 1clc_A Endoglucanase CELD; EC: 64.0 1.2E+02 0.004 32.8 15.1 89 256-347 235-329 (639)
86 1gai_A Glucoamylase-471; hydro 63.3 8.5 0.00029 40.1 5.7 121 229-374 53-197 (472)
87 1wgn_A UBAP1, ubiquitin associ 60.9 11 0.00038 27.5 4.2 30 365-400 33-62 (63)
88 1v7w_A Chitobiose phosphorylas 58.5 61 0.0021 35.7 12.1 21 256-276 363-383 (807)
89 3qde_A Cellobiose phosphorylas 57.6 1.3E+02 0.0043 33.5 14.3 85 256-351 374-472 (811)
90 2p0v_A Hypothetical protein BT 55.3 2E+02 0.0067 29.9 14.2 75 334-409 366-444 (489)
91 3qde_A Cellobiose phosphorylas 53.6 2.6E+02 0.009 30.8 20.7 101 162-274 359-472 (811)
92 2dna_A Unnamed protein product 52.2 15 0.00051 27.4 3.8 29 366-400 35-63 (67)
93 3k7x_A LIN0763 protein; Q92DQ0 52.0 28 0.00097 34.5 7.2 161 162-354 91-256 (349)
94 1v7w_A Chitobiose phosphorylas 50.4 1.6E+02 0.0056 32.3 13.9 32 163-199 349-380 (807)
95 1ia6_A Cellulase CEL9M; cellul 46.1 2.6E+02 0.0087 28.5 13.7 130 256-392 95-237 (441)
96 2xfg_A Endoglucanase 1; hydrol 40.6 3.2E+02 0.011 28.0 14.7 90 256-348 115-215 (466)
97 2dna_A Unnamed protein product 39.4 33 0.0011 25.5 3.9 27 430-462 37-63 (67)
98 1wgn_A UBAP1, ubiquitin associ 39.2 34 0.0012 25.0 3.8 27 429-461 35-61 (63)
99 1vej_A Riken cDNA 4931431F19; 39.1 32 0.0011 26.1 3.9 29 366-400 45-73 (74)
100 2cpw_A CBL-interacting protein 36.5 29 0.00098 25.5 3.3 28 366-398 34-61 (64)
101 1vg5_A RSGI RUH-014, rhomboid 32.6 51 0.0017 24.9 4.1 29 365-399 43-71 (73)
102 1wiv_A UBP14, ubiquitin-specif 30.6 62 0.0021 24.3 4.4 28 365-398 43-70 (73)
103 2dah_A Ubiquilin-3; UBA domain 29.7 53 0.0018 23.1 3.6 26 367-398 26-51 (54)
104 3e6u_A LANC-like protein 1; al 29.6 4.3E+02 0.015 26.3 13.9 24 256-279 253-276 (411)
105 3e6u_A LANC-like protein 1; al 28.8 1.9E+02 0.0067 28.9 9.2 46 359-404 227-275 (411)
106 1cb8_A Protein (chondroitinase 27.7 4.3E+02 0.015 28.5 12.2 28 327-354 78-105 (678)
107 3a0o_A Oligo alginate lyase; a 27.2 57 0.002 35.9 5.2 84 310-401 318-410 (776)
108 2knz_A Ubiquilin-4; cytoplasm, 27.2 61 0.0021 22.6 3.6 25 428-458 27-51 (53)
109 1tf4_A T. fusca endo/EXO-cellu 27.0 1.8E+02 0.0063 30.9 9.0 21 256-276 94-114 (605)
110 2crn_A Ubash3A protein; compac 26.9 41 0.0014 24.7 2.7 29 365-398 23-51 (64)
111 3gzk_A Cellulase; fold from GH 26.8 1E+02 0.0035 32.4 6.8 89 256-347 191-285 (537)
112 1wji_A Tudor domain containing 26.2 64 0.0022 23.5 3.6 28 429-462 25-52 (63)
113 1vg5_A RSGI RUH-014, rhomboid 25.7 62 0.0021 24.4 3.5 28 428-461 44-71 (73)
114 1g92_A Poneratoxin, PAC-TX; ne 25.4 42 0.0015 19.2 1.9 21 9-32 1-21 (26)
115 3cih_A Putative alpha-rhamnosi 23.3 5.9E+02 0.02 27.5 12.5 56 181-244 409-469 (739)
116 1whc_A RSGI RUH-027, UBA/UBX 3 22.4 62 0.0021 23.6 2.9 29 365-398 23-51 (64)
117 1vej_A Riken cDNA 4931431F19; 22.3 92 0.0031 23.5 3.9 27 429-461 46-72 (74)
118 3eu8_A Putative glucoamylase; 21.8 2.4E+02 0.0083 28.7 8.2 101 162-269 64-169 (430)
119 3eu8_A Putative glucoamylase; 20.5 2.1E+02 0.0071 29.2 7.3 106 229-346 64-169 (430)
No 1
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=100.00 E-value=1.1e-97 Score=829.06 Aligned_cols=493 Identities=46% Similarity=0.890 Sum_probs=452.8
Q ss_pred CceeecchHHHHHHHhhCCCcCcCCcchhhhhhhcccCCCCCCCchhhhcccccccCCCCCchHHHHHHHHHHHHhhhhc
Q 010631 1 MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYPHPLIQDVLWATLDKVVEPLL 80 (505)
Q Consensus 1 ~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~l~~el~~~~~~~~~~~~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 80 (505)
||||+|+|||||+|||++||++|.+|++.+||+|||++||++|+|.++|+.|+++|+|+|+++++..++..+ +++|+++
T Consensus 229 ~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~lr~el~~~~~~~~~~~~~r~~~~~~d~~~p~~~~~~~~~~~l-~~~e~~~ 307 (732)
T 1w6k_A 229 LWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTPHSWLLRVVYALL-NLYEHHH 307 (732)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHTTSCSSCGGGCCSGGGTTCCCGGGCSSCCCHHHHHHHHHH-HHHHHTC
T ss_pred HHHHHHHHHHhHHHHhhcCCCCCCCcchhhHHHHhcCCCccccchhhhccccccccccCCHHHHHHHHHHHH-HHhhhcC
Confidence 799999999999999999999998999999999999999999999999999999999999999988888777 6677654
Q ss_pred cCCCChHHHHHHHHHHHHHHhhccCCcceeeechhhhhhhhheeccc-CCCCHHHHHHHhhhhhceeeeCCCceeecCCC
Q 010631 81 MHWPGKKLREKALRNAIKHIHYEDENTRYLCIGPVNKVLNMLCCWVE-DPNSEAFKLHIPRINDYLWIAEDGMKVQGYNG 159 (505)
Q Consensus 81 ~~~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~pv~~~l~~l~~~~~-~~~~~~~~~~~~~l~~~~~~~~~g~~~q~~~~ 159 (505)
++++|++|++++++||+++|++++|+||+||+++++|++++.. +|++|.+++|+++|.+|+|+.+||+++|+||+
T Consensus 308 ----~~~lr~~a~~~~~~~i~~~~~~~~~~~i~pv~~~l~~l~~~~~~G~~~~~~~~~l~~l~~~l~~~~dG~~~q~~~g 383 (732)
T 1w6k_A 308 ----SAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKMQGTNG 383 (732)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHCTTSHHHHHHHHTSGGGEEEETTEEEECSSSC
T ss_pred ----cHHHHHHHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhheeCCCCceeCCCCC
Confidence 3789999999999999999999999999999999999998864 49999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCCCc--chHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHH
Q 010631 160 SQLWDTAFAVQAIISTNLVE--EYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLK 237 (505)
Q Consensus 160 s~vwDTa~a~~AL~~ag~~~--~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~ 237 (505)
|+||||+++++||.++|+++ ++.+.++||++||+++|++++ +|||..++|+.++|||+|++.+++|||+||||++++
T Consensus 384 s~vwdTalal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~-~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~ 462 (732)
T 1w6k_A 384 SQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDN-PPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALK 462 (732)
T ss_dssp CHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCC-CTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhccccc-CCcccccccCCCCCeecCCCCCCCCCccccHHHHHH
Confidence 99999999999999999865 467899999999999999864 579999999999999999999999999999999999
Q ss_pred HhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHH
Q 010631 238 ASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQAL 317 (505)
Q Consensus 238 aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL 317 (505)
||..+.+..+.. +..++.+.+++|++||+++|++||||++|+.+++..|++.+||+++|+++++|++++++|++||.+|
T Consensus 463 aL~~~~~~~~~~-g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL 541 (732)
T 1w6k_A 463 AVLLLQEKCPHV-TEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQAL 541 (732)
T ss_dssp HHHHHHHHCTTC-CSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHH
T ss_pred HHHHHhcccccc-cchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHH
Confidence 998876543211 3456788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHHHHHHcCCCCCCc---HHHHHHHHHHHh
Q 010631 318 TSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNS---SSIRKACEFLLS 394 (505)
Q Consensus 318 ~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~---~~i~ra~~~L~~ 394 (505)
..++...++++.+++++.|+||++||++.|++||+|+++||++++|+|++++.||.++|..+.++ +.++||++||++
T Consensus 542 ~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~wg~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls 621 (732)
T 1w6k_A 542 KYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLS 621 (732)
T ss_dssp HHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSBSSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHT
T ss_pred HHhccccccccchhhHHHHHHHHHHHHhhcCCCCCccCcCCCccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHH
Confidence 99988777777677788999999999999999999999999999999999999999999863333 899999999999
Q ss_pred ccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCcccceec
Q 010631 395 KQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFN 474 (505)
Q Consensus 395 ~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~w~~~~~~g~f~ 474 (505)
+|++||||++++.+|.+..|.+ +..|++++|||||+||+.++.. +.++++++++||+++|+++|+|++++++|+||
T Consensus 622 ~Q~~DGGWge~~~s~~~~~y~~--~~~s~v~~TAwALlALl~ag~~--~~~~i~r~v~wL~~~Q~~~Ggf~~~~~~g~f~ 697 (732)
T 1w6k_A 622 RQMADGGWGEDFESCEERRYVQ--SAQSQIHNTCWAMMGLMAVRHP--DIEAQERGVRCLLEKQLPNGDWPQENIAGVFN 697 (732)
T ss_dssp TCCTTSCCCBCTHHHHHTSCCB--CSSCCHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHCCTTSCCCCCSCCEEET
T ss_pred hcccCCCCCCCCccccccccCC--CCCCCHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHhcCCCCCccCCccccccc
Confidence 9999999999988888777875 5578999999999999999876 45679999999999999999999999999999
Q ss_pred cccccccCCchhhHHHHHHHHHHHHhhhhc
Q 010631 475 RNCMISYSAYRNIFPIWALGEYRCRVLEAH 504 (505)
Q Consensus 475 ~~~~~~y~~y~~~fpl~AL~~y~~~~~~~~ 504 (505)
++|||+||+|+++|||+||++|++++..++
T Consensus 698 ~~~~i~Y~~y~~~fpl~AL~~y~~~~~~~~ 727 (732)
T 1w6k_A 698 KSCAISYTSYRNIFPIWALGRFSQLYPERA 727 (732)
T ss_dssp TTEEECCTTHHHHHHHHHHHHHHHHCTTSG
T ss_pred chhhhcccchhHHHHHHHHHHHHHhcchhh
Confidence 999999999999999999999999876543
No 2
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=100.00 E-value=4.5e-83 Score=704.09 Aligned_cols=457 Identities=25% Similarity=0.374 Sum_probs=397.0
Q ss_pred CceeecchHHHHHHHhhCCCcCcCCcchhhhhhhcccCCCCCCCchhhhcccccccCCCCCchHHHHHHHHHHHHhhhhc
Q 010631 1 MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYPHPLIQDVLWATLDKVVEPLL 80 (505)
Q Consensus 1 ~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~l~~el~~~~~~~~~~~~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 80 (505)
||||+|+|+|||+||+++||++|+|+++ +| +|||++||++|+|.. +.|++.+...+...+ +++++
T Consensus 166 ~~~~~R~~~~P~~~l~~~r~~~~~~~~~-~l-~el~~~~~~~~~~~~----------~~~~~~~~~~~~~~l-~~~~~-- 230 (631)
T 2sqc_A 166 FGSWARATVVALSIVMSRQPVFPLPERA-RV-PELYETDVPPRRRGA----------KGGGGWIFDALDRAL-HGYQK-- 230 (631)
T ss_dssp SCHHHHHHHHHHHHHHHHCCCCCCCGGG-CC-GGGGCCSSCCCCCCC----------TTCCCHHHHHHHHHH-HHHHH--
T ss_pred hHHHHHHHHHhHHHHhhCCCccCCCCCC-CH-HHhcCCCccccCccc----------cccHHHHHHHHHHHH-HHhhc--
Confidence 7999999999999999999999987775 88 999999999999863 346666555553333 44443
Q ss_pred cCCCChHHHHHHHHHHHHHHhhccCCcce---eeechhhhhhhhheecccCCCCHHHHHHHhhhhhceeeeCC-Cceeec
Q 010631 81 MHWPGKKLREKALRNAIKHIHYEDENTRY---LCIGPVNKVLNMLCCWVEDPNSEAFKLHIPRINDYLWIAED-GMKVQG 156 (505)
Q Consensus 81 ~~~~~~~~r~~a~~~~~~~~~~~~~~~~~---~~~~pv~~~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-g~~~q~ 156 (505)
+|++++|++|++++++||+++++++++ +++++++++++++++ +.+ ++|.+++|+++|++|+|..+| |+++|+
T Consensus 231 --~~~~~lr~~a~~~~~~~i~~~~~~~g~~~~i~p~~~~~~~~l~~~-g~~-~~~~~~~~~~~~~~~~~~~~dGg~~~~~ 306 (631)
T 2sqc_A 231 --LSVHPFRRAAEIRALDWLLERQAGDGSWGGIQPPWFYALIALKIL-DMT-QHPAFIKGWEGLELYGVELDYGGWMFQA 306 (631)
T ss_dssp --SSCCTTHHHHHHHHHHHHHHHCCTTSSSTTSHHHHHHHHHHHHHT-TCT-TSHHHHHHHHGGGGGEEECTTSCEEECS
T ss_pred --CCcHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHhceEEcCCCceeeCC
Confidence 355679999999999999999998875 334446676655554 333 999999999999999999888 899999
Q ss_pred CCCCChhHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHH
Q 010631 157 YNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGL 236 (505)
Q Consensus 157 ~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al 236 (505)
| +|+||||+++++||.++|.+.+ ++.++||++||++.|+.+ +|||..++++.++|||+|++.|++|||+||||+++
T Consensus 307 ~-~s~vwdta~~l~AL~~~G~~~~-~~~~~ka~~~L~~~q~~~--~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~al 382 (631)
T 2sqc_A 307 S-ISPVWDTGLAVLALRAAGLPAD-HDRLVKAGEWLLDRQITV--PGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVV 382 (631)
T ss_dssp S-CCHHHHHHHHHHHHHHTTCCTT-CHHHHHHHHHHHHTCCCS--CCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHH
T ss_pred C-CChHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCC--CCChhhhcCCCCCCCCccccCCCCCCchHHHHHHH
Confidence 9 6999999999999999998765 789999999999999953 59999999999999999999999999999999999
Q ss_pred HHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCC--cccccCCCcchHHHH
Q 010631 237 KASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGD--IVIDYPCVECTSASI 314 (505)
Q Consensus 237 ~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~--~~~d~~~~~~Ta~vl 314 (505)
+||..+.. + ...++.+.+.+|++||+++|++||||+.|+.+++..+++.+| |++ .++|++++++|+.||
T Consensus 383 ~AL~~~~~-~----~~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~----F~~~~~~~d~~~vd~Ta~vl 453 (631)
T 2sqc_A 383 WALNTLRL-P----DERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIP----FSDFGEVTDPPSEDVTAHVL 453 (631)
T ss_dssp HHHTTCCC-S----CHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGST----TCSSSCSSCCCBHHHHHHHH
T ss_pred HHHHHcCC-C----ccchhHHHHHHHHHHHHhhcCCCCCCCccCCCCccccccccc----cccCCcccCCCCchHHHHHH
Confidence 99986543 1 112356789999999999999999999999988888988887 443 477889999999999
Q ss_pred HHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHh
Q 010631 315 QALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLS 394 (505)
Q Consensus 315 ~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~ 394 (505)
.+|..++. +.+ .+.++||++||++.|++||||+++|+++++|+|++++.+|..+|.. ..++.++|+++||++
T Consensus 454 ~aL~~~g~--~~~-----~~~i~rai~~L~~~Q~~DGsw~g~wg~~~~y~Ta~~l~aL~~~g~~-~~~~~i~rav~~L~s 525 (631)
T 2sqc_A 454 ECFGSFGY--DDA-----WKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGID-TREPYIQKALDWVEQ 525 (631)
T ss_dssp HHHHTTTC--CTT-----SHHHHHHHHHHHHHCCTTSCCCCSSBSSHHHHHHHHHHHHHHTTCC-TTSHHHHHHHHHHHH
T ss_pred HHHHhcCC--Ccc-----HHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHHHHHHhCCc-ccHHHHHHHHHHHHH
Confidence 99998864 222 3689999999999999999999999999999999999999999987 578999999999999
Q ss_pred ccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCcccce-e
Q 010631 395 KQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGV-F 473 (505)
Q Consensus 395 ~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~w~~~~~~g~-f 473 (505)
+|++||||++.+.+|.+..|.+ ++.+++++|+|||+||..++..+ ..+++|+++||+++|++||+|.++++||+ |
T Consensus 526 ~Q~~DGgWg~~~~sy~~~~~~~--~~~s~v~~Ta~ALlaL~~ag~~~--~~~i~rav~wL~~~Q~~dGgw~~~~~tg~gf 601 (631)
T 2sqc_A 526 HQNPDGGWGEDCRSYEDPAYAG--KGASTPSQTAWALMALIAGGRAE--SEAARRGVQYLVETQRPDGGWDEPYYTGTGF 601 (631)
T ss_dssp TCCTTSCCCCCGGGGTCGGGTT--CSSCCHHHHHHHHHHHHHTTCSS--SHHHHHHHHHHHHHCCTTSCCCCCSCCEEEE
T ss_pred hCcCCCCcCCccccccccccCC--CCCCCHHHHHHHHHHHHHcCCCC--hHHHHHHHHHHHhccCCCCCcCCCCcccccc
Confidence 9999999999998888777753 46789999999999999999873 35699999999999999999999999999 9
Q ss_pred ccccccccCCchhhHHHHHHHHHHHHhh
Q 010631 474 NRNCMISYSAYRNIFPIWALGEYRCRVL 501 (505)
Q Consensus 474 ~~~~~~~y~~y~~~fpl~AL~~y~~~~~ 501 (505)
|++|||+||+|+++|||+||++|++++-
T Consensus 602 ~~~~yl~y~~y~~~f~l~AL~~y~~~~~ 629 (631)
T 2sqc_A 602 PGDFYLGYTMYRHVFPTLALGRYKQAIE 629 (631)
T ss_dssp TTTEEEEETTHHHHHHHHHHHHHHHHHH
T ss_pred cccceeeccchhhHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998763
No 3
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.98 E-value=1.9e-31 Score=293.42 Aligned_cols=305 Identities=21% Similarity=0.213 Sum_probs=221.9
Q ss_pred hHHHHHHHHHHHHHHhhccCCcce--eeechhh-hhhhhhee--cccCCCCHHHHHHHhhhhhceeeeCC----------
Q 010631 86 KKLREKALRNAIKHIHYEDENTRY--LCIGPVN-KVLNMLCC--WVEDPNSEAFKLHIPRINDYLWIAED---------- 150 (505)
Q Consensus 86 ~~~r~~a~~~~~~~~~~~~~~~~~--~~~~pv~-~~l~~l~~--~~~~~~~~~~~~~~~~l~~~~~~~~~---------- 150 (505)
++..+++++++.+++-.+++++.+ .|.+||| +++.+.++ .+..+++|.++|++++|++..+..++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~dGg~~~~~~~s~vwdta~~l~AL~~~G~~~~~~~~~ka~~~L~~~q~~~~g~~~~~~~~~s 359 (631)
T 2sqc_A 280 HPAFIKGWEGLELYGVELDYGGWMFQASISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLK 359 (631)
T ss_dssp SHHHHHHHHGGGGGEEECTTSCEEECSSCCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTCCCSCCGGGGTCTTSC
T ss_pred CHHHHHHHHHHHhceEEcCCCceeeCCCCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCCCCChhhhcCCCC
Confidence 457888888888876533332323 3457787 45544444 35456799999999999887653222
Q ss_pred --CceeecCC--CCChhHHHHHHHHHHhcCCCc--chHHHHHHHHHHHHhcccCCCCCCCccccccC---CCCCCCCCcc
Q 010631 151 --GMKVQGYN--GSQLWDTAFAVQAIISTNLVE--EYGATLKKAHKYIKDSQVLEDCPGNLDFWYRH---ISKGAWPFST 221 (505)
Q Consensus 151 --g~~~q~~~--~s~vwDTa~a~~AL~~ag~~~--~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~---~~~GgW~f~~ 221 (505)
|+.++..| .+++||||++++||.+++.+. ...+.+.+|++||+++|+++ |.|...... .-.++|+|.+
T Consensus 360 ~GgW~f~~~~~~~p~v~dTA~al~AL~~~~~~~~~~~~~~l~~a~~wLls~Q~~d---Ggf~~~~~~~~~~~~~~~~F~~ 436 (631)
T 2sqc_A 360 PGGFAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSN---GGWGAYDVDNTSDLPNHIPFSD 436 (631)
T ss_dssp CCCBCSSSSCTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCCTT---SCBCSSCSSCCCSGGGGSTTCS
T ss_pred CCCCccccCCCCCCchHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHhhcCCC---CCCCccCCCCcccccccccccc
Confidence 22222222 267999999999999998753 24678999999999999986 677443221 1235677765
Q ss_pred cCC--CCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCC
Q 010631 222 ADH--GWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGD 299 (505)
Q Consensus 222 ~~~--~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~ 299 (505)
.+. .+|++|||+.++.+|..+.. +...+.+++|++||+++|++||||. +.
T Consensus 437 ~~~~~d~~~vd~Ta~vl~aL~~~g~--------~~~~~~i~rai~~L~~~Q~~DGsw~--------------------g~ 488 (631)
T 2sqc_A 437 FGEVTDPPSEDVTAHVLECFGSFGY--------DDAWKVIRRAVEYLKREQKPDGSWF--------------------GR 488 (631)
T ss_dssp SSCSSCCCBHHHHHHHHHHHHTTTC--------CTTSHHHHHHHHHHHHHCCTTSCCC--------------------CS
T ss_pred CCcccCCCCchHHHHHHHHHHhcCC--------CccHHHHHHHHHHHHHhcCCCCCCC--------------------CC
Confidence 432 34899999999999875531 2346789999999999999999992 22
Q ss_pred cccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcc-----------cCCCCccchHHHH
Q 010631 300 IVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYG-----------SWGVCFTYGTWFG 368 (505)
Q Consensus 300 ~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g-----------~wg~~~~y~T~~a 368 (505)
+.++ ++.+|+.++.+|..++... ..+.++||++||++.|++||+|+. .++...++.|+++
T Consensus 489 wg~~--~~y~Ta~~l~aL~~~g~~~-------~~~~i~rav~~L~s~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~A 559 (631)
T 2sqc_A 489 WGVN--YLYGTGAVVSALKAVGIDT-------REPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWA 559 (631)
T ss_dssp SBSS--HHHHHHHHHHHHHHTTCCT-------TSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHH
T ss_pred CCCC--chHHHHHHHHHHHHhCCcc-------cHHHHHHHHHHHHHhCcCCCCcCCccccccccccCCCCCCCHHHHHHH
Confidence 2223 3578999999999887521 136899999999999999999954 2345667789999
Q ss_pred HHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccc---cccccccCCCCCCchhHHHHHHHHHHHc
Q 010631 369 VKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSC---QKKVYSNLEGDRSHVVNTAWAMLALIDA 437 (505)
Q Consensus 369 l~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~---~~~~y~~~~~~~s~~~~Ta~ALlaL~~a 437 (505)
|.||..+|.. ..+.++|+++||+++|++||||+++..+. +...|. +.+.+.+.++|.||...
T Consensus 560 LlaL~~ag~~--~~~~i~rav~wL~~~Q~~dGgw~~~~~tg~gf~~~~yl-----~y~~y~~~f~l~AL~~y 624 (631)
T 2sqc_A 560 LMALIAGGRA--ESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYL-----GYTMYRHVFPTLALGRY 624 (631)
T ss_dssp HHHHHHTTCS--SSHHHHHHHHHHHHHCCTTSCCCCCSCCEEEETTTEEE-----EETTHHHHHHHHHHHHH
T ss_pred HHHHHHcCCC--ChHHHHHHHHHHHhccCCCCCcCCCCccccccccccee-----eccchhhHHHHHHHHHH
Confidence 9999999986 46889999999999999999999876542 223333 34568999999999875
No 4
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=99.96 E-value=1.3e-29 Score=265.05 Aligned_cols=223 Identities=19% Similarity=0.205 Sum_probs=174.7
Q ss_pred HHHHHHHHHhc-ccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHH
Q 010631 185 LKKAHKYIKDS-QVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSV 263 (505)
Q Consensus 185 l~~A~~~L~~~-Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av 263 (505)
.++.++||+++ |..+ |||+..+.+. ...+-.++.+|..+. ..++.+.+++++
T Consensus 75 ~~~hi~~l~~~lq~~~---------------gg~~a~D~~r----~~l~y~~l~aL~lLg--------~~~~~~~~~r~v 127 (437)
T 2h6f_B 75 REKHFHYLKRGLRQLT---------------DAYECLDASR----PWLCYWILHSLELLD--------EPIPQIVATDVC 127 (437)
T ss_dssp HHHHHHHHHHHTTEEC---------------GGGGGGTTCH----HHHHHHHHHHHHHTT--------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCC---------------CCcccccCCC----ccHHHHHHHHHHHhC--------CCCCHHHHHHHH
Confidence 47899999999 7653 7887765542 223334555655443 234567899999
Q ss_pred HHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHH
Q 010631 264 NVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFI 343 (505)
Q Consensus 264 ~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L 343 (505)
+||+++|++||||+.++. +.+++.+|.++|.+|..++.... .+ ...++|+++||
T Consensus 128 ~~l~s~Q~~dGGf~g~~~---------------------~~~~i~~T~~Al~aL~~lg~~~~---~~--~i~i~kav~~L 181 (437)
T 2h6f_B 128 QFLELCQSPEGGFGGGPG---------------------QYPHLAPTYAAVNALCIIGTEEA---YD--IINREKLLQYL 181 (437)
T ss_dssp HHHHHHBCTTSSBBSSTT---------------------CCBCHHHHHHHHHHHHHHCCHHH---HT--TSCHHHHHHHH
T ss_pred HHHHHhCCCCCCcCCccC---------------------CCcchhHHHHHHHHHHHhCCccc---cc--chHHHHHHHHH
Confidence 999999999999986542 22457789999999999875310 00 12479999999
Q ss_pred HHhccccCCCccc-CCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCC
Q 010631 344 EKIQELDGSWYGS-WGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRS 422 (505)
Q Consensus 344 ~~~Q~~DG~W~g~-wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s 422 (505)
++.|++||||++. ||.++++.|+.++.+|..+|.. +.+.++|+++||+++|++|||||+. ++..|
T Consensus 182 ~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~--~~~~v~k~~~~L~s~Q~~DGGwg~~------------pg~eS 247 (437)
T 2h6f_B 182 YSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNII--TPDLFEGTAEWIARCQNWEGGIGGV------------PGMEA 247 (437)
T ss_dssp HTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCC--CTTTTTTHHHHHHHHBCTTSSBCSS------------TTSCC
T ss_pred HHhCCCCCCeeecCCCCccchhHHHHHHHHHHhCCC--ChHHHHHHHHHHHHccCCCCCcCCC------------CCCCC
Confidence 9999999999996 9988999999999999998874 5678999999999999999999986 24579
Q ss_pred chhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCc-CCCCCCCCcccceeccccc
Q 010631 423 HVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQM-ENGDYPQEEIMGVFNRNCM 478 (505)
Q Consensus 423 ~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~-~~G~w~~~~~~g~f~~~~~ 478 (505)
++.+|+|||.||..+|..+ ...++++++||+++|. ++|+|.... +-.+.+||
T Consensus 248 h~~~T~~Al~aL~~lg~~~--~~~~~rl~~wL~~rQ~~~~GGf~gRp--~K~~D~cY 300 (437)
T 2h6f_B 248 HGGYTFCGLAALVILKRER--SLNLKSLLQWVTSRQMRFEGGFQGRC--NKLVDGCY 300 (437)
T ss_dssp CHHHHHHHHHHHHHHTCGG--GSCHHHHHHHHHHTBCTTTCSBBSST--TSCBCTTH
T ss_pred CccHHHHHHHHHHHcCCCC--cccHHHHHHHHHhcCCCCCCCccCCC--CCccchHH
Confidence 9999999999999999863 3458999999999998 789997653 23455565
No 5
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=99.93 E-value=1e-25 Score=228.56 Aligned_cols=280 Identities=17% Similarity=0.178 Sum_probs=206.0
Q ss_pred HHHHHhhhhhceeeeCCCceeecCCCCChhHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccccccCCC
Q 010631 134 FKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHIS 213 (505)
Q Consensus 134 ~~~~~~~l~~~~~~~~~g~~~q~~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~ 213 (505)
..+|++.|.+.+- ............+.+|-+=+++.+|...|..+. ...+++++||.++|+++
T Consensus 20 ~~~h~~y~~~~~~-~~~~~~~~~~d~~r~~~~yw~l~~L~lLg~l~~--~~r~~~i~~l~s~Q~~d-------------- 82 (331)
T 3dss_B 20 LEKHADYIASYGS-KKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHR--MNKEEILVFIKSCQHEC-------------- 82 (331)
T ss_dssp HHHHHHHHHHTTS-SSCGGGSGGGGGGHHHHHHHHHHHHHHTTCGGG--SCHHHHHHHHHHTBCTT--------------
T ss_pred HHHHHHHHHHhcc-CCCCccceeccccHHHHHHHHHHHHHHhCCCch--hhHHHHHHHHhhhcCCC--------------
Confidence 6799999887632 122112222235789999999999999885432 34678999999999865
Q ss_pred CCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCc
Q 010631 214 KGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNP 293 (505)
Q Consensus 214 ~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~ 293 (505)
|||+.... ..+++-+|..|+.+|..+.. .+...++++++||.++|++||||....
T Consensus 83 -GGF~g~~g--~~~~l~~Ty~Al~~L~~l~~---------~~~id~~k~~~fL~~~Q~~DGsf~~~~------------- 137 (331)
T 3dss_B 83 -GGVSASIG--HDPHLLYTLSAVQILTLYDS---------IHVINVDKVVAYVQSLQKEDGSFAGDI------------- 137 (331)
T ss_dssp -SCBBSSTT--SCBCHHHHHHHHHHHHHTTC---------GGGSCHHHHHHHHHHTBCTTSCBBSST-------------
T ss_pred -CCcCCCCC--CCccHHHHHHHHHHHHHcCC---------ccHHHHHHHHHHHhccCCCCCCEeccc-------------
Confidence 55554332 24788999999999876532 123348899999999999999996311
Q ss_pred ccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCC-ccchHHHHHHHH
Q 010631 294 AETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVC-FTYGTWFGVKGL 372 (505)
Q Consensus 294 ~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~-~~y~T~~al~aL 372 (505)
++. +++..|..++.+|..++... ...++++++||.+.|++||+|+++++.. ....|++|+.+|
T Consensus 138 ---~ge-----~d~~~ty~Al~~L~llg~~~--------~~~~~k~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~al~aL 201 (331)
T 3dss_B 138 ---WGE-----IDTRFSFCAVATLALLGKLD--------AINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFL 201 (331)
T ss_dssp ---TCC-----BCHHHHHHHHHHHHHHTCGG--------GSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHH
T ss_pred ---CCC-----CchHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHhCcCCCCcCCCCCCCCcHHHHHHHHHHH
Confidence 111 22445667778887776531 1358999999999999999999987643 455699999999
Q ss_pred HHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHH
Q 010631 373 VAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAAR 452 (505)
Q Consensus 373 ~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~ 452 (505)
..+|.. ....++++++||+++|++||||+... +...++..|.|++.+|...|... ...++++++
T Consensus 202 ~llg~~--~~~~~~~~~~wL~~~Q~~dGGf~gr~------------~k~~D~cys~w~l~~L~llg~~~--~~~~~~~~~ 265 (331)
T 3dss_B 202 AITSQL--HQVNSDLLGWWLCERQLPSGGLNGRP------------EKLPDVCYSWWVLASLKIIGRLH--WIDREKLRS 265 (331)
T ss_dssp HHTTCG--GGSCHHHHHHHHHTTBCTTSCBCSST------------TCCCCHHHHHHHHHHHHHTTCGG--GSCHHHHHH
T ss_pred Hhcccc--chhhHHHHHHHHHHhCCCCCCcCCCC------------CCCCcchhHHHHHHHHHHcCCcc--hhhHHHHHH
Confidence 999875 23458899999999999999998752 34567888999999999998752 234899999
Q ss_pred HHHhcCcCC-CCCCCCcccceeccccccccCCchhhHHHHHHHHH
Q 010631 453 YLINSQMEN-GDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGEY 496 (505)
Q Consensus 453 ~L~~~Q~~~-G~w~~~~~~g~f~~~~~~~y~~y~~~fpl~AL~~y 496 (505)
||+++|+.+ |+|...+ |.- =+.|-++|.|.||+.-
T Consensus 266 fil~cQ~~~~GGf~~~p--g~~-------~d~~hT~~~l~~Ls~~ 301 (331)
T 3dss_B 266 FILACQDEETGGFADRP--GDM-------VDPFHTLFGIAGLSLL 301 (331)
T ss_dssp HHHHTBCTTTCCBCSST--TSC-------CBHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCCCcCCCC--CCC-------CCHHHHHHHHHHHHHc
Confidence 999999987 9998763 211 2346678888888764
No 6
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=99.93 E-value=5.8e-26 Score=233.33 Aligned_cols=212 Identities=17% Similarity=0.112 Sum_probs=164.5
Q ss_pred chhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhccc---------CCcceeeeecccccchhcccCcccccCC
Q 010631 229 SDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQN---------ADGGFATYELMRSYPWLEVLNPAETFGD 299 (505)
Q Consensus 229 ~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn---------~dGgw~~~~~~~~~~~l~~~~~~e~f~~ 299 (505)
...+=.+|.+|..+.... .+ ..+++++||++||+ +||||++++..+.+. .+..+|.+ +
T Consensus 48 ~~~~yw~l~~L~lLg~l~------~~---~~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~-~d~~~~~~---~ 114 (377)
T 1n4q_B 48 LTIAFFALSGLDMLDSLD------VV---NKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPF-NPSKNPGT---A 114 (377)
T ss_dssp HHHHHHHHHHHHHTTCGG------GS---CHHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCC-CSSCSCCC---C
T ss_pred HHHHHHHHHHHHHhCCCC------cc---CHHHHHHHHHHhcCCccccccCCCCCccCCCcccCCCh-hhhccccc---c
Confidence 344556666666554311 12 27899999999999 689999998764332 34444443 5
Q ss_pred cccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcc--cCCCCccchHHHHHHHHHHcCC
Q 010631 300 IVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYG--SWGVCFTYGTWFGVKGLVAAGM 377 (505)
Q Consensus 300 ~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g--~wg~~~~y~T~~al~aL~~~G~ 377 (505)
.++|++++.+|.++|.+|..++...+. + ..+++++||++.|++||||++ .||.++++.|+.|+.+|..+|.
T Consensus 115 ~~~d~~~v~~T~~Al~~L~~lg~~~~~-----i--d~~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~ 187 (377)
T 1n4q_B 115 HPYDSGHIAMTYTGLSCLIILGDDLSR-----V--DKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNN 187 (377)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTTCCSTT-----S--CHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTC
T ss_pred ccCCCCCHHHHHHHHHHHHHhCcccch-----h--hHHHHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcC
Confidence 688999999999999999999854321 2 248999999999999999999 6999999999999999999987
Q ss_pred CCCCcHHHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCC-c-HHHHHHHHHHH
Q 010631 378 NYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETD-P-TPLHRAARYLI 455 (505)
Q Consensus 378 ~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d-~-~~i~rgv~~L~ 455 (505)
. +.+.++|+++||+++|+.|||||+++ +.+|+..+|++|+.+|...+..+.+ + ..++|+++||+
T Consensus 188 ~--~~~~v~ka~~fL~scQn~DGGfGe~p------------~~ESh~g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~ 253 (377)
T 1n4q_B 188 W--SGMDMKKAISYIRRSMSYDNGLAQGA------------GLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCI 253 (377)
T ss_dssp G--GGSCHHHHHHHHHHTBCTTSSBBSST------------TSCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHH
T ss_pred C--ChHHHHHHHHHHHHhcCCCCCCCCCC------------CCCCchhHHHHHHHHHHHhcCcccccchhhHHHHHHHHH
Confidence 3 56789999999999999999999962 4578999999999999988865311 1 15899999999
Q ss_pred hcCcCCCCCCCCcccceeccccc
Q 010631 456 NSQMENGDYPQEEIMGVFNRNCM 478 (505)
Q Consensus 456 ~~Q~~~G~w~~~~~~g~f~~~~~ 478 (505)
++| +|+|.... +..+..||
T Consensus 254 ~rQ--~gGf~GR~--nK~~D~CY 272 (377)
T 1n4q_B 254 MRQ--QNGYHGRP--NKPVDTCY 272 (377)
T ss_dssp TTB--SSSBCSST--TSCCCTTH
T ss_pred hcC--CCCcCCCC--CcchhHHH
Confidence 999 78886652 22555554
No 7
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.93 E-value=3.9e-25 Score=246.06 Aligned_cols=314 Identities=14% Similarity=0.118 Sum_probs=206.4
Q ss_pred hHHHHHHHHHHHHHHhhccCCccee--ee-chhh-hhhhhheec--ccCC---CCHHHHHHHhhhhhceeee--C-----
Q 010631 86 KKLREKALRNAIKHIHYEDENTRYL--CI-GPVN-KVLNMLCCW--VEDP---NSEAFKLHIPRINDYLWIA--E----- 149 (505)
Q Consensus 86 ~~~r~~a~~~~~~~~~~~~~~~~~~--~~-~pv~-~~l~~l~~~--~~~~---~~~~~~~~~~~l~~~~~~~--~----- 149 (505)
++..+++++++.+++...++ +.+. +. +||+ +++.++++. +... ..+.+++++++|.+..... .
T Consensus 355 ~~~~~~~l~~l~~~l~~~~d-G~~~q~~~gs~vwdTalal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~~~d~~~~ 433 (732)
T 1w6k_A 355 STAFQEHVSRIPDYLWMGLD-GMKMQGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNPPDYQKY 433 (732)
T ss_dssp SHHHHHHHHTSGGGEEEETT-EEEECSSSCCHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCCCTTGGGG
T ss_pred CHHHHHHHHHHHHhheeCCC-CceeCCCCCCchHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhcccccCCccccc
Confidence 45677788888777653333 2231 22 5677 455554542 2222 3678899999997654322 1
Q ss_pred ------CCceeecCC--CCChhHHHHHHHHHHhcCC-----C-cchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCC
Q 010631 150 ------DGMKVQGYN--GSQLWDTAFAVQAIISTNL-----V-EEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKG 215 (505)
Q Consensus 150 ------~g~~~q~~~--~s~vwDTa~a~~AL~~ag~-----~-~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~G 215 (505)
+|+.++..+ .+.+++||++++||...+. . ....+.+++|++||+++|++| |.|..+.++.. +
T Consensus 434 ~r~~~~GGW~f~~~~~~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wLls~Q~~D---Ggw~a~~~~~~-~ 509 (732)
T 1w6k_A 434 YRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPD---GGFATYETKRG-G 509 (732)
T ss_dssp TCCCCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTT---SCBCSSSCCCS-C
T ss_pred ccCCCCCeecCCCCCCCCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCC---CCEEeecCCCc-h
Confidence 233333222 3578999999999987521 1 224678999999999999986 66643222110 1
Q ss_pred CCC--------CcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccch
Q 010631 216 AWP--------FSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPW 287 (505)
Q Consensus 216 gW~--------f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~ 287 (505)
.|- |......++.+++|+.++.+|..+....+.. +.....+.+++|++||++.|++||||..
T Consensus 510 ~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~-~~~~~~~~i~rAv~yL~~~Q~~DGsW~g--------- 579 (732)
T 1w6k_A 510 HLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEH-RAAEIRETLTQGLEFCRRQQRADGSWEG--------- 579 (732)
T ss_dssp GGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTS-SHHHHHHHHHHHHHHHHHHSCTTSCCCC---------
T ss_pred HHHhhCcchhcccccccCCCcchHHHHHHHHHHHhccccccc-cchhhHHHHHHHHHHHHhhcCCCCCccC---------
Confidence 110 1111123457899999999998765422110 0112357899999999999999999942
Q ss_pred hcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccC----------
Q 010631 288 LEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSW---------- 357 (505)
Q Consensus 288 l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~w---------- 357 (505)
.+.+.+ +..|+.++.+|...+....+ ..+.+.++||++||++.|++||+|.+..
T Consensus 580 -----------~wg~~~--~Y~T~~al~AL~~aG~~~~~---~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~ 643 (732)
T 1w6k_A 580 -----------SWGVCF--TYGTWFGLEAFACMGQTYRD---GTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQ 643 (732)
T ss_dssp -----------SSBSSH--HHHHHHHHHHHHHTTCCCBT---TBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCB
T ss_pred -----------cCCCcc--chHHHHHHHHHHHhCCcccc---cchhHHHHHHHHHHHHhcccCCCCCCCCccccccccCC
Confidence 222222 34799999999998763211 1123689999999999999999998632
Q ss_pred -CCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccc--cccccccCCCCCCchhHHHHHHHHH
Q 010631 358 -GVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSC--QKKVYSNLEGDRSHVVNTAWAMLAL 434 (505)
Q Consensus 358 -g~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~--~~~~y~~~~~~~s~~~~Ta~ALlaL 434 (505)
+...+..|++||.||..+|.. +.+.++++++||+++|++||||.+..... +...|. ..+.+...++|.||
T Consensus 644 ~~~s~v~~TAwALlALl~ag~~--~~~~i~r~v~wL~~~Q~~~Ggf~~~~~~g~f~~~~~i-----~Y~~y~~~fpl~AL 716 (732)
T 1w6k_A 644 SAQSQIHNTCWAMMGLMAVRHP--DIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCAI-----SYTSYRNIFPIWAL 716 (732)
T ss_dssp CSSCCHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHCCTTSCCCCCSCCEEETTTEEE-----CCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHhcCCCCCccCCcccccccchhhh-----cccchhHHHHHHHH
Confidence 122445699999999999864 57889999999999999999998654321 122222 23457889999999
Q ss_pred HHc
Q 010631 435 IDA 437 (505)
Q Consensus 435 ~~a 437 (505)
...
T Consensus 717 ~~y 719 (732)
T 1w6k_A 717 GRF 719 (732)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 8
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=99.92 E-value=1.3e-25 Score=228.82 Aligned_cols=202 Identities=13% Similarity=0.121 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHhcccCCCCCCCccccccCC--------------------CCCCCC-C---cccCCCCCCchhhHHHHHH
Q 010631 183 ATLKKAHKYIKDSQVLEDCPGNLDFWYRHI--------------------SKGAWP-F---STADHGWPISDCTSEGLKA 238 (505)
Q Consensus 183 ~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~--------------------~~GgW~-f---~~~~~~~pd~d~Ta~al~a 238 (505)
+..+++.+.|+..|... |.|.+...-. .+|.|. . ...+.+++|.|+|+.++++
T Consensus 81 ~~A~~iAd~ll~~Q~~~---GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~a 157 (408)
T 1r76_A 81 KAARHVADVIVSFQTPA---GGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRF 157 (408)
T ss_dssp HHHHHHHHHHHHHCCTT---SCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHH
T ss_pred HHHHHHHHHHHHccccC---CCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHH
Confidence 34678889999999986 8997643211 112221 0 1124567999999999999
Q ss_pred hHHhhhc-cccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHH
Q 010631 239 SLLLSKL-SSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQAL 317 (505)
Q Consensus 239 L~~~~~~-~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL 317 (505)
|..+... .. .+.+...+++.||++||++||++||||+.|++++ ..++++|| |.| ++|++||++|
T Consensus 158 L~rv~~~~t~--~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn-~~y~~~Ip----FnD--------Dvt~rvle~L 222 (408)
T 1r76_A 158 LAQVVSQLAP--EEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLE-GGYHDAIT----YND--------DALVHVAELL 222 (408)
T ss_dssp HHHHHHHSCG--GGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCC-CGGGGSEE----CGG--------GHHHHHHHHH
T ss_pred HHHHHhhccc--cccHHHHHHHHHHHHHHHHccCCCCCCcCcCccc-cccccCCC----cCc--------HHHHHHHHHH
Confidence 9876542 10 0123467999999999999999999999999998 68999997 543 7899999999
Q ss_pred HHhhhhCCC------CchhhhHHHHHHHHHHHHHhccc-cCCCcccCCCCccchHHH----------HHHHHHHcC----
Q 010631 318 TSFKKLYPG------HWQEDVDHCIKRAVKFIEKIQEL-DGSWYGSWGVCFTYGTWF----------GVKGLVAAG---- 376 (505)
Q Consensus 318 ~~~~~~~~~------~~~~~i~~~i~rav~~L~~~Q~~-DG~W~g~wg~~~~y~T~~----------al~aL~~~G---- 376 (505)
..++..... .......++++||++||++.|.+ ||+|+ +||++|+|+|+. +|.++..++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~av~Rgi~~Ll~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~ 301 (408)
T 1r76_A 223 SDIAAGRDGFGFVPPAIRTRALEATNAAIHCIVETQVVQDGKRL-GWGQQHDALTLRPTSARNFEPAALSSTESARILLF 301 (408)
T ss_dssp HHHHHTCTTCTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEEC-CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHH
T ss_pred HHHHhccCcccccchhhhhhHHHHHHHHHHHHHHhhcccCCccc-chhcccccccCcchhhhccCCccccHHHHHHHHHH
Confidence 998762111 11234568999999999999999 99999 999999999876 555544442
Q ss_pred ---CCCCCc----HHHHHHHHHHHhccCCCCCCCc
Q 010631 377 ---MNYSNS----SSIRKACEFLLSKQRPSGGWGE 404 (505)
Q Consensus 377 ---~~~~~~----~~i~ra~~~L~~~Q~~DGgWge 404 (505)
.. ..+ ++|++|++||.++|++||+|..
T Consensus 302 LM~~~-~~~~~~~~aI~~Av~WL~s~Q~~dg~w~~ 335 (408)
T 1r76_A 302 LMEIE-APSDAVKQAIRGGVAWLNTSVIRDRAWVK 335 (408)
T ss_dssp HTTSS-SCCHHHHHHHHHHHHHHHHSCCCC-----
T ss_pred HccCC-CCCHHHHHHHHHHHHHHHHhhcCCCceee
Confidence 22 223 3899999999999999999963
No 9
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=99.92 E-value=6e-25 Score=222.83 Aligned_cols=205 Identities=22% Similarity=0.266 Sum_probs=161.6
Q ss_pred CchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCC
Q 010631 228 ISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCV 307 (505)
Q Consensus 228 d~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~ 307 (505)
.+..|=.++.+|..+... +....+++++||+++|++||||+.... ..+++
T Consensus 46 r~~~~yw~l~~L~lLg~l---------~~~~r~~~i~~l~s~Q~~dGGF~g~~g---------------------~~~~l 95 (331)
T 3dss_B 46 RMSGVYWGLTVMDLMGQL---------HRMNKEEILVFIKSCQHECGGVSASIG---------------------HDPHL 95 (331)
T ss_dssp HHHHHHHHHHHHHHTTCG---------GGSCHHHHHHHHHHTBCTTSCBBSSTT---------------------SCBCH
T ss_pred HHHHHHHHHHHHHHhCCC---------chhhHHHHHHHHhhhcCCCCCcCCCCC---------------------CCccH
Confidence 456677788887766432 223467899999999999999975321 23567
Q ss_pred cchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCccc-CCCCccchHHHHHHHHHHcCCCCCCcHHHH
Q 010631 308 ECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGS-WGVCFTYGTWFGVKGLVAAGMNYSNSSSIR 386 (505)
Q Consensus 308 ~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~-wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ 386 (505)
..|..+|.+|..++.. +++ .++++++||++.|++||||++. ||.++++.|++|+.+|..+|.. +.+.++
T Consensus 96 ~~Ty~Al~~L~~l~~~------~~i--d~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~--~~~~~~ 165 (331)
T 3dss_B 96 LYTLSAVQILTLYDSI------HVI--NVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKL--DAINVE 165 (331)
T ss_dssp HHHHHHHHHHHHTTCG------GGS--CHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCG--GGSCHH
T ss_pred HHHHHHHHHHHHcCCc------cHH--HHHHHHHHHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCCC--CHHHHH
Confidence 7899999999988542 112 3789999999999999999986 9988999999999999999874 456799
Q ss_pred HHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCCCCC
Q 010631 387 KACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQ 466 (505)
Q Consensus 387 ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~w~~ 466 (505)
|+++||+++|++||||++. ++..|+..+|+||+.+|..++..+ +..++++++||+++|+++|+|..
T Consensus 166 k~v~~L~s~Q~~dGGfg~~------------pg~esh~~~T~~al~aL~llg~~~--~~~~~~~~~wL~~~Q~~dGGf~g 231 (331)
T 3dss_B 166 KAIEFVLSCMNFDGGFGCR------------PGSESHAGQIYCCTGFLAITSQLH--QVNSDLLGWWLCERQLPSGGLNG 231 (331)
T ss_dssp HHHHHHHTTBCTTSCBCSS------------TTCCCCHHHHHHHHHHHHHTTCGG--GSCHHHHHHHHHTTBCTTSCBCS
T ss_pred HHHHHHHHhCcCCCCcCCC------------CCCCCcHHHHHHHHHHHHhccccc--hhhHHHHHHHHHHhCCCCCCcCC
Confidence 9999999999999999986 255789999999999999998763 33489999999999999999987
Q ss_pred CcccceeccccccccCCchhhHHHHHHHH
Q 010631 467 EEIMGVFNRNCMISYSAYRNIFPIWALGE 495 (505)
Q Consensus 467 ~~~~g~f~~~~~~~y~~y~~~fpl~AL~~ 495 (505)
.. +..+..|| .+|.+.+|+.
T Consensus 232 r~--~k~~D~cy-------s~w~l~~L~l 251 (331)
T 3dss_B 232 RP--EKLPDVCY-------SWWVLASLKI 251 (331)
T ss_dssp ST--TCCCCHHH-------HHHHHHHHHH
T ss_pred CC--CCCCcchh-------HHHHHHHHHH
Confidence 53 23455665 2455555543
No 10
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.92 E-value=6.7e-25 Score=221.46 Aligned_cols=199 Identities=20% Similarity=0.200 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHH
Q 010631 257 KRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCI 336 (505)
Q Consensus 257 ~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i 336 (505)
+.|++|+++++++|++||||++|+.. ++++..|++|+.+|+.+.+.... .++.+
T Consensus 54 ~~i~~g~~~~l~~q~~dGgf~~f~~~---------------------~~s~wlTa~v~~~l~~a~~~~~v-----~~~~i 107 (310)
T 2wy7_A 54 ELIKKGYTQQLAFRQPSSAFAAFVKR---------------------APSTWLTAYVVKVFSLAVNLIAI-----DSQVL 107 (310)
T ss_dssp HHHHHHHHHHHTTBCTTSCBCSSTTS---------------------CCCHHHHHHHHHHHHHHTTTSCC-----CHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccCCCC---------------------CccHHHHHHHHHHHHHHHhcCCC-----CHHHH
Confidence 56889999999999999999987532 34567899999999998764221 13689
Q ss_pred HHHHHHHHH-hccccCCCcccCCCCc--------------cchHHHHHHHHHHc------CCCCCCcHHHHHHHHHHHhc
Q 010631 337 KRAVKFIEK-IQELDGSWYGSWGVCF--------------TYGTWFGVKGLVAA------GMNYSNSSSIRKACEFLLSK 395 (505)
Q Consensus 337 ~rav~~L~~-~Q~~DG~W~g~wg~~~--------------~y~T~~al~aL~~~------G~~~~~~~~i~ra~~~L~~~ 395 (505)
++|++||.+ .|++||+|.+.|++++ ++.|++++.+|..+ |.+ ..++.|+||++||.++
T Consensus 108 ~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~-~~~~~i~~A~~~L~~~ 186 (310)
T 2wy7_A 108 CGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVN-SLPGSITKAGDFLEAN 186 (310)
T ss_dssp HHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCT-THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCccccCCCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCCc-chHHHHHHHHHHHHHH
Confidence 999999995 9999999999988654 45699999999988 444 4578999999999999
Q ss_pred cCC-CCCCCcCcccc--------------------cccccccCCCCC-CchhHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Q 010631 396 QRP-SGGWGESYLSC--------------------QKKVYSNLEGDR-SHVVNTAWAMLALIDAGQAETDPTPLHRAARY 453 (505)
Q Consensus 396 Q~~-DGgWge~~~s~--------------------~~~~y~~~~~~~-s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~ 453 (505)
|++ +++|+....++ .+..|+..++.. .++++|||||++|+.++.. +.+.++++|
T Consensus 187 ~~~~~~~y~~a~~ayAL~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~----~~~~~~v~w 262 (310)
T 2wy7_A 187 YMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDF----DFVPPVVRW 262 (310)
T ss_dssp GGGCCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTCT----TTHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCCh----hhHHHHHHH
Confidence 875 33333221111 122333211111 2678999999999999764 238999999
Q ss_pred HHhcCcCCCCCCCCcccceeccccccccCCchhhHHHHHHHHHHHHhhh
Q 010631 454 LINSQMENGDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGEYRCRVLE 502 (505)
Q Consensus 454 L~~~Q~~~G~w~~~~~~g~f~~~~~~~y~~y~~~fpl~AL~~y~~~~~~ 502 (505)
|+++|+++|+|.+++. ++++|+||++|.++.+.
T Consensus 263 L~~qq~~~Ggw~sTq~----------------T~~aL~AL~~y~~~~~~ 295 (310)
T 2wy7_A 263 LNEQRYYGGGYGSTQA----------------TFMVFQALAQYQKDAPD 295 (310)
T ss_dssp HHHTTCCCCSTTCHHH----------------HHHHHHHHHHHHHHCC-
T ss_pred HHHccCCCCCeeccHH----------------HHHHHHHHHHHHHHcCC
Confidence 9999999999998765 46899999999988654
No 11
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.92 E-value=3.1e-24 Score=213.11 Aligned_cols=197 Identities=19% Similarity=0.195 Sum_probs=150.9
Q ss_pred hHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHH
Q 010631 256 TKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHC 335 (505)
Q Consensus 256 ~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~ 335 (505)
.+.|++|+++++++|++||||++|+. +++++..|++|+.+|+.+.+.... .++.
T Consensus 37 ~~~i~~g~~~~l~~q~~dGgf~~f~~---------------------~~~s~wlTa~v~~~l~~a~~~~~v-----~~~~ 90 (277)
T 1qqf_A 37 LELIKKGYTQQLAFKQPISAYAAFNN---------------------RPPSTWLTAYVSRVFSLAANLIAI-----DSQV 90 (277)
T ss_dssp HHHHHHHHHHHHTTBCTTSCBCSSTT---------------------SCCCHHHHHHHHHHHHHHTTTSCC-----CHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCccccCC---------------------CCccHHHHHHHHHHHHHHhhcCCC-----CHHH
Confidence 35688999999999999999998753 234567899999999998764211 1368
Q ss_pred HHHHHHHHHH-hccccCCCcccCCCCc--------------cchHHHHHHHHHHc------CCCCCCcHHHHHHHHHHHh
Q 010631 336 IKRAVKFIEK-IQELDGSWYGSWGVCF--------------TYGTWFGVKGLVAA------GMNYSNSSSIRKACEFLLS 394 (505)
Q Consensus 336 i~rav~~L~~-~Q~~DG~W~g~wg~~~--------------~y~T~~al~aL~~~------G~~~~~~~~i~ra~~~L~~ 394 (505)
+++|++||.+ .|++||+|.+.|++++ ++.|++++.+|..+ |.+ ..++.|+||++||.+
T Consensus 91 i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~-~~~~~i~~A~~~L~~ 169 (277)
T 1qqf_A 91 LCGAVKWLILEKQKPDGVFQEDGPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVN-SLPGSINKAGEYLEA 169 (277)
T ss_dssp HHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCT-THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCccCCccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCC-chHHHHHHHHHHHHH
Confidence 9999999995 9999999999987654 45699999999988 444 557899999999999
Q ss_pred ccCC-CCCCCcCcccc--------------------cccccccCCCCC-CchhHHHHHHHHHHHcCCCCCCcHHHHHHHH
Q 010631 395 KQRP-SGGWGESYLSC--------------------QKKVYSNLEGDR-SHVVNTAWAMLALIDAGQAETDPTPLHRAAR 452 (505)
Q Consensus 395 ~Q~~-DGgWge~~~s~--------------------~~~~y~~~~~~~-s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~ 452 (505)
+|++ +++|+....++ .+..|+.-++.. .++++|||||++|+.++.. +.+.++++
T Consensus 170 ~~~~~~~~y~~a~~ayAl~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~----~~~~~~v~ 245 (277)
T 1qqf_A 170 SYLNLQRPYTVAIAGYALALMNKLEEPYLTKFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKDF----DSVPPVVR 245 (277)
T ss_dssp HHTTCCCHHHHHHHHHHHHHTTCCCTTHHHHHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTCT----TSHHHHHH
T ss_pred HhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCCh----hhHHHHHH
Confidence 9875 34333222111 022233211111 2678999999999999764 23899999
Q ss_pred HHHhcCcCCCCCCCCcccceeccccccccCCchhhHHHHHHHHHHHH
Q 010631 453 YLINSQMENGDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGEYRCR 499 (505)
Q Consensus 453 ~L~~~Q~~~G~w~~~~~~g~f~~~~~~~y~~y~~~fpl~AL~~y~~~ 499 (505)
||+++|+++|+|.+++. +++.|.||++|..+
T Consensus 246 wL~~qq~~~Ggw~sTq~----------------T~~aL~AL~~y~~~ 276 (277)
T 1qqf_A 246 WLNDERYYGGGYGSTQA----------------TFMVFQALAQYRAD 276 (277)
T ss_dssp HHHHCCCCTTSTTCHHH----------------HHHHHHHHHHHHHH
T ss_pred HHHHccCCCCCeecchH----------------HHHHHHHHHHHHHh
Confidence 99999999999999876 46999999999865
No 12
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=99.90 E-value=1.9e-24 Score=214.51 Aligned_cols=186 Identities=12% Similarity=0.099 Sum_probs=143.9
Q ss_pred HHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHh
Q 010631 189 HKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFS 268 (505)
Q Consensus 189 ~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~ 268 (505)
.+-|+..|... |.|.+..--...+--. ...+..++|.|+|+.++++|..+.... +.+...+++.||++||++
T Consensus 37 Ad~~l~~Q~~~---GGW~kn~d~~~~~~~~-~~~~~~t~DnddTa~vl~~Larv~~~~----~~~~y~~Ai~Rgl~wlL~ 108 (332)
T 1gxm_A 37 ADVVLSYQQNN---GGWPKNLDYNSVGNGG-GGNESGTIDNGATITEMVFLAEVYKSG----GNTKYRDAVRKAANFLVN 108 (332)
T ss_dssp HHHHHHTCCTT---SCCCSCCCTTTCCCCC-CCCSCEECGGGTTHHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcCC---CCCCcceecccccccC-CCCCCCCccCccHHHHHHHHHHHhccc----cchHHHHHHHHHHHHHHh
Confidence 67889999876 7886643211110000 112456799999999999998765421 123467999999999999
Q ss_pred cccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCc--------hhhhHHHHHHHH
Q 010631 269 LQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHW--------QEDVDHCIKRAV 340 (505)
Q Consensus 269 ~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~--------~~~i~~~i~rav 340 (505)
||++||||+.|++++ ..++++|| |.| ++|++||++|..++...+.+. .....++++||+
T Consensus 109 mQ~~nGGWpqFdpd~-~~Yl~~Ip----FnD--------DvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgi 175 (332)
T 1gxm_A 109 SQYSTGALPQFYPLK-GGYSDHAT----FND--------NGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGT 175 (332)
T ss_dssp HCCTTSCCBSEESCC-SGGGGSEE----CGG--------GHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHH
T ss_pred ccCCCCCccccCCCc-ccccccCC----cch--------HHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHH
Confidence 999999999999986 78999998 544 789999999999864322220 034568999999
Q ss_pred HHHHHhccccCCCcccCCCCccchHHH----------HHHHHHHcC-------CCCCCcH----HHHHHHHHHHhccC
Q 010631 341 KFIEKIQELDGSWYGSWGVCFTYGTWF----------GVKGLVAAG-------MNYSNSS----SIRKACEFLLSKQR 397 (505)
Q Consensus 341 ~~L~~~Q~~DG~W~g~wg~~~~y~T~~----------al~aL~~~G-------~~~~~~~----~i~ra~~~L~~~Q~ 397 (505)
+||++.|.+||||+++||.+|+|+|+. +|.++.++| .+ . ++ +|++|++||.++|+
T Consensus 176 d~Llk~Qe~dggw~g~Wg~qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~-~-~~~v~~aI~~Av~WL~~~q~ 251 (332)
T 1gxm_A 176 DYILKAQWKQNGVLTVWCAQHGALDYQPKKARAYELESLSGSESVGVLAFLMTQP-Q-TAEIEQAVRAGVAWFNSPRT 251 (332)
T ss_dssp HHHHHHSCEETTEECCCCSEECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSC-C-CHHHHHHHHHHHHHHTCTTT
T ss_pred HHHHHhhCccCCCcCeeccccccccccccccccccccchhHHHHHHHHHHhccCC-C-CHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999998 888887774 33 3 55 79999999999999
No 13
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=99.90 E-value=3.7e-23 Score=216.96 Aligned_cols=202 Identities=14% Similarity=0.115 Sum_probs=159.1
Q ss_pred ccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhh
Q 010631 253 PIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDV 332 (505)
Q Consensus 253 ~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i 332 (505)
.++.+..+++++||+++|++||||+.++. ..+++++.+|.++|.+|..++..+|+++.++|
T Consensus 105 ~ld~~~~~~~I~~Ils~Q~~dGGFgg~p~-------------------~~~~~hla~TysAV~aL~ilg~~~p~~~~~~I 165 (520)
T 3q7a_B 105 ALDQGTKDRVVSTLLHFLSPKGGFGGGPA-------------------NSQIPHLLPTYASVCSLAIAGNDSSTGGWKDL 165 (520)
T ss_dssp CCCHHHHHHHHHHHHTTBCTTSSBCSSCT-------------------TTSCCCHHHHHHHHHHHHHHCBSSTTSBHHHH
T ss_pred CCChHHHHHHHHHHHHHcCCCCCCCCCCC-------------------CCCCCcHHHHHHHHHHHHHhCccccchhhhhh
Confidence 44567889999999999999999986531 13567899999999999999987777777777
Q ss_pred HHHHHHHHHHHHHhccccCCCcc-cCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcc----
Q 010631 333 DHCIKRAVKFIEKIQELDGSWYG-SWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYL---- 407 (505)
Q Consensus 333 ~~~i~rav~~L~~~Q~~DG~W~g-~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~---- 407 (505)
+..++++++||++.|++||||++ .||.+++|+|++|+.+|...|.. ..+.++|+++||+++|+.|||||++..
T Consensus 166 d~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~--~~~~v~kav~fI~scQn~DGGfGe~s~~~~~ 243 (520)
T 3q7a_B 166 AAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDII--TPELLHNVDKFVSACQTYEGGFACASFPFPS 243 (520)
T ss_dssp HHTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCC--CHHHHTTHHHHHHTTBCTTSSBCSCEEEEC-
T ss_pred hhHHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHhcCCCCCccCccccccc
Confidence 76789999999999999999999 49999999999999999999874 678899999999999999999999310
Q ss_pred --------cccccc-cccCCCCCCchhHHHHHHHHHHHcCCCCC----CcHHHHHHHHHHHhcCc---CCCCCCCCcccc
Q 010631 408 --------SCQKKV-YSNLEGDRSHVVNTAWAMLALIDAGQAET----DPTPLHRAARYLINSQM---ENGDYPQEEIMG 471 (505)
Q Consensus 408 --------s~~~~~-y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~----d~~~i~rgv~~L~~~Q~---~~G~w~~~~~~g 471 (505)
..+.+. -. ++.+++.-.|..||-+|...+..+. +...+++.++||..+|. ++|+|.... .
T Consensus 244 ~~~~~~~~~~~rp~~~~--Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~~RQ~~~~e~GGF~GR~--N 319 (520)
T 3q7a_B 244 VVPSTSAFPTSEPSCRV--SMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRT--N 319 (520)
T ss_dssp -----------CCSEEE--ECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHHHTBCCGGGTTCBBSST--T
T ss_pred cccccccccccccccCC--CCCccchhHHHHHHHHHHHhccccccccccccCHHHHHHHHHHhCCcccCCCcccCCC--C
Confidence 000000 01 2567888899888888887765320 11237899999999996 568887653 3
Q ss_pred eecccccc
Q 010631 472 VFNRNCMI 479 (505)
Q Consensus 472 ~f~~~~~~ 479 (505)
-.+..||-
T Consensus 320 KlvD~CYS 327 (520)
T 3q7a_B 320 KLVDGCYS 327 (520)
T ss_dssp SCBCTTHH
T ss_pred CCCchhhh
Confidence 36667764
No 14
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=99.90 E-value=6.2e-23 Score=214.68 Aligned_cols=286 Identities=14% Similarity=0.147 Sum_probs=198.3
Q ss_pred HHHHHhhhhhceeeeCCCceeecCCCCChhHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccccccCCC
Q 010631 134 FKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHIS 213 (505)
Q Consensus 134 ~~~~~~~l~~~~~~~~~g~~~q~~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~ 213 (505)
..+|+++|.+.+-..++|.- ....+..|-+-+++.||.-.|...+ .+.++++++||+++|+++
T Consensus 75 ~~~hi~~l~~~lq~~~gg~~--a~D~~r~~l~y~~l~aL~lLg~~~~-~~~~~r~v~~l~s~Q~~d-------------- 137 (437)
T 2h6f_B 75 REKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIP-QIVATDVCQFLELCQSPE-------------- 137 (437)
T ss_dssp HHHHHHHHHHHTTEECGGGG--GGTTCHHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHBCTT--------------
T ss_pred HHHHHHHHHHcCCCCCCCcc--cccCCCccHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHhCCCC--------------
Confidence 57899999886422334432 2224567888778888888775433 567899999999999976
Q ss_pred CCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCc
Q 010631 214 KGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNP 293 (505)
Q Consensus 214 ~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~ 293 (505)
|||+.... +.+++.+|..||.+|..+.... ..+...+++|++||.++|++||||....
T Consensus 138 -GGf~g~~~--~~~~i~~T~~Al~aL~~lg~~~------~~~~i~i~kav~~L~s~Q~~DGsf~~~~------------- 195 (437)
T 2h6f_B 138 -GGFGGGPG--QYPHLAPTYAAVNALCIIGTEE------AYDIINREKLLQYLYSLKQPDGSFLMHV------------- 195 (437)
T ss_dssp -SSBBSSTT--CCBCHHHHHHHHHHHHHHCCHH------HHTTSCHHHHHHHHHTTBCTTSCBBSST-------------
T ss_pred -CCcCCccC--CCcchhHHHHHHHHHHHhCCcc------cccchHHHHHHHHHHHhCCCCCCeeecC-------------
Confidence 66654332 2367899999999998764310 0122348899999999999999996311
Q ss_pred ccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCC-CccchHHHHHHHH
Q 010631 294 AETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGV-CFTYGTWFGVKGL 372 (505)
Q Consensus 294 ~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~-~~~y~T~~al~aL 372 (505)
.| .+++..|..++.+|..++... .+.++|+++||++.|++||||+++-+. .....|++||.||
T Consensus 196 ---~G-----e~d~~~ty~A~~~L~llg~~~--------~~~v~k~~~~L~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL 259 (437)
T 2h6f_B 196 ---GG-----EVDVRSAYCAASVASLTNIIT--------PDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAAL 259 (437)
T ss_dssp ---TC-----CBSHHHHHHHHHHHHHTTCCC--------TTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHH
T ss_pred ---CC-----CccchhHHHHHHHHHHhCCCC--------hHHHHHHHHHHHHccCCCCCcCCCCCCCCCccHHHHHHHHH
Confidence 11 122445666777777766431 135789999999999999999876543 3334599999999
Q ss_pred HHcCCCCCCcHHHHHHHHHHHhccC-CCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCC-------C--C-
Q 010631 373 VAAGMNYSNSSSIRKACEFLLSKQR-PSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQ-------A--E- 441 (505)
Q Consensus 373 ~~~G~~~~~~~~i~ra~~~L~~~Q~-~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~-------~--~- 441 (505)
..+|.. +...++|+++||+++|. ++|||.... +...++..|.|++-+|...+. . .
T Consensus 260 ~~lg~~--~~~~~~rl~~wL~~rQ~~~~GGf~gRp------------~K~~D~cYSfw~~a~L~lL~~~~~~~~~~~~~~ 325 (437)
T 2h6f_B 260 VILKRE--RSLNLKSLLQWVTSRQMRFEGGFQGRC------------NKLVDGCYSFWQAGLLPLLHRALHAQGDPALSM 325 (437)
T ss_dssp HHHTCG--GGSCHHHHHHHHHHTBCTTTCSBBSST------------TSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCS
T ss_pred HHcCCC--CcccHHHHHHHHHhcCCCCCCCccCCC------------CCccchHHHHHHHHHHHHHhhhhhccccccccc
Confidence 999975 34468999999999999 789986531 234567778787766644321 0 0
Q ss_pred -CCcHHHHHHHHHHHh-cCcCCCCCCCCcccceeccccccccCCchhhHHHHHHHHHH
Q 010631 442 -TDPTPLHRAARYLIN-SQMENGDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGEYR 497 (505)
Q Consensus 442 -~d~~~i~rgv~~L~~-~Q~~~G~w~~~~~~g~f~~~~~~~y~~y~~~fpl~AL~~y~ 497 (505)
......++..+||+. +|+++|||...+ |..| ..|-++|.|-+|+...
T Consensus 326 ~~~l~d~~~l~~yIL~~~Q~~~GGf~d~P--g~~~-------D~yHT~y~L~gLsl~~ 374 (437)
T 2h6f_B 326 SHWMFHQQALQEYILMCCQCPAGGLLDKP--GKSR-------DFYHTCYCLSGLSIAQ 374 (437)
T ss_dssp SCCSSCHHHHHHHHHHHSBCTTSCBCSST--TSCC-------CHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHccCCCCCccCCC--CCCC-------CHHHHHHHHHHHHHhc
Confidence 001124677899997 899999988764 2222 2356789999998765
No 15
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.89 E-value=5.8e-22 Score=204.44 Aligned_cols=296 Identities=17% Similarity=0.110 Sum_probs=193.2
Q ss_pred HHHhhhhhceeeeCCCceeecCCCCChhHHHHHHHHHHhcCC----C----cchHHHHHHHHHHHHhcccCCCCCCCccc
Q 010631 136 LHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNL----V----EEYGATLKKAHKYIKDSQVLEDCPGNLDF 207 (505)
Q Consensus 136 ~~~~~l~~~~~~~~~g~~~q~~~~s~vwDTa~a~~AL~~ag~----~----~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~ 207 (505)
+.++.|.+ -|.|.-.|.. +..+=..++.++|...+. . ++....|+++++||++.|..|
T Consensus 42 ~~l~~L~~----~P~Gc~EQ~~--s~~~P~~~v~~~l~~~~~w~~~~~~~~~~~~~~i~~g~~~ll~~Q~~d-------- 107 (367)
T 1hzf_A 42 GGVASLLR----LPRGCGEQTM--IYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKAD-------- 107 (367)
T ss_dssp HHHHTTCC----CCCSSHHHHH--HHHHHHHHHHHHHHHTTCSTTSCTTHHHHHHHHHHHHHHHHHTTBCTT--------
T ss_pred HHHHHHHh----CCCCCHHHHH--HHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHHHHHhccCCC--------
Confidence 44444443 3666544432 333444477777776543 2 134568999999999999986
Q ss_pred cccCCCCCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccch
Q 010631 208 WYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPW 287 (505)
Q Consensus 208 ~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~ 287 (505)
|||+....+. ++.+.|++++++|..+.+. ..++.+.+++|++||++.|++||+|..-.....
T Consensus 108 -------Ggf~~~~~~~--~~~~lTa~v~~~l~~a~~~------~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~--- 169 (367)
T 1hzf_A 108 -------GSYAAWLSRD--SSTWLTAFVLKVLSLAQEQ------VGGSPEKLQETSNWLLSQQQADGSFQDPCPVLD--- 169 (367)
T ss_dssp -------SCBCSSTTSC--CCHHHHHHHHHHHHHHGGG------TCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSC---
T ss_pred -------CCeeccCCCC--CcHHHHHHHHHHHHHHHHH------hCCCHHHHHHHHHHHHHhhccCCCccccccccc---
Confidence 7776554443 4789999999999877642 135678999999999999999999964211100
Q ss_pred hcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCc----hhhhHHHHHHHHHHHHHhccccCCCcccCCCCccc
Q 010631 288 LEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHW----QEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTY 363 (505)
Q Consensus 288 l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~----~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y 363 (505)
.+.-|....+.+.+..|++||.+|...+...++.. .....+.|+||++||.++..++ ....|
T Consensus 170 ------~~~~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~~~~--------~~~~y 235 (367)
T 1hzf_A 170 ------RSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAG--------LLGAH 235 (367)
T ss_dssp ------GGGGGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHT--------CCCHH
T ss_pred ------ccccCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhhhcc--------cCCHH
Confidence 00011111123446789999999987664322100 0124568999999998873222 12478
Q ss_pred hHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCC---CCcCcccc-------cc----cccccCCCCCC-chhHHH
Q 010631 364 GTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGG---WGESYLSC-------QK----KVYSNLEGDRS-HVVNTA 428 (505)
Q Consensus 364 ~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGg---Wge~~~s~-------~~----~~y~~~~~~~s-~~~~Ta 428 (505)
+.+.+..||..+|.. ....+++.+-|.+....+|+ |++...+. .+ ..+.+ ...| ++++||
T Consensus 236 ~~Al~ayAL~l~~~~---~~~~~~~~~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~~--~~~s~~vE~TA 310 (367)
T 1hzf_A 236 AAAITAYALTLTKAP---ADLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMP--QAPALWIETTA 310 (367)
T ss_dssp HHHHHHHHHHHTTCC---HHHHHHHHHHHHTTCEECSSCEECC--------------------------CCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCc---HHHHHHHHHHHHHHhhhcCCCCccCCCCCcccccccccccccccccccC--CCccchhHHHH
Confidence 888888899888754 33445677777776554444 87653220 00 01121 1233 789999
Q ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCcccceeccccccccCCchhhHHHHHHHHHHHHhh
Q 010631 429 WAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGEYRCRVL 501 (505)
Q Consensus 429 ~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~w~~~~~~g~f~~~~~~~y~~y~~~fpl~AL~~y~~~~~ 501 (505)
|||++|+..+.. .+.+.++++||+++|+.+|+|.+++. +++.|.||+.|....+
T Consensus 311 yaLLall~~~~~---~~~~~~iv~WL~~qrn~~Ggw~sTqd----------------TvvAL~AL~~y~~~~~ 364 (367)
T 1hzf_A 311 YALLHLLLHEGK---AEMADQASAWLTRQGSFQGGFRSTQD----------------TVIALDALSAYWIASH 364 (367)
T ss_dssp HHHHHHHHHTCS---SHHHHHHHHHHHHHTTSTTCSCSHHH----------------HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccCc---hhhhHHHHHHHHhCcCCCCCcccHHH----------------HHHHHHHHHHHHHHcC
Confidence 999999987532 34589999999999999999999876 4799999999987654
No 16
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=99.85 E-value=3.1e-20 Score=190.77 Aligned_cols=292 Identities=14% Similarity=0.122 Sum_probs=195.1
Q ss_pred HHHHHhhhhhceeeeCCCceeecCCCCChhHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccccccCCC
Q 010631 134 FKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHIS 213 (505)
Q Consensus 134 ~~~~~~~l~~~~~~~~~g~~~q~~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~ 213 (505)
..+|++.+.+.+-.-++. ++....+.+|-+=+++.+|.-.|..+... .+++++||+++|+... .+.. ...
T Consensus 22 ~~~H~~y~~~~l~~lp~~--~~~~d~~r~~~~yw~l~~L~lLg~l~~~~--~~~~i~wils~Q~~p~---~~~~---~~~ 91 (377)
T 1n4q_B 22 RDRHVRFFQRCLQVLPER--YSSLETSRLTIAFFALSGLDMLDSLDVVN--KDDIIEWIYSLQVLPT---EDRS---NLD 91 (377)
T ss_dssp HHHHHHHHHHHHHEECGG--GGGGGGGHHHHHHHHHHHHHHTTCGGGSC--HHHHHHHHHTTEECCC---TTCT---TGG
T ss_pred HHHHHHHHHHHhhcCCcc--ccccccchHHHHHHHHHHHHHhCCCCccC--HHHHHHHHHHhcCCcc---cccc---CCC
Confidence 678999888775332333 33344678999999999999887543322 7899999999998210 1100 012
Q ss_pred CCCCCCcccC---------------CCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceee
Q 010631 214 KGAWPFSTAD---------------HGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFAT 278 (505)
Q Consensus 214 ~GgW~f~~~~---------------~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~ 278 (505)
.|||+.+... ..+|.+.+|..|+.+|..+.... +.-..+++++||.++|++||||..
T Consensus 92 ~GGF~g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~~--------~~id~~~~~~fL~~~Q~~DGSf~g 163 (377)
T 1n4q_B 92 RCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDL--------SRVDKEACLAGLRALQLEDGSFCA 163 (377)
T ss_dssp GCEECSSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCS--------TTSCHHHHHHHHHHHBCTTSCBCS
T ss_pred CCccCCCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCccc--------chhhHHHHHHHHHHhcCCCCCeee
Confidence 3677654432 12478999999999998765321 122347899999999999999953
Q ss_pred eecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCC
Q 010631 279 YELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWG 358 (505)
Q Consensus 279 ~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg 358 (505)
... +|. .++.-|-.++.+|..++... ...++++++||++.|+.||||++.-+
T Consensus 164 ~~~---------------wGe-----~DirftY~Al~~l~llg~~~--------~~~v~ka~~fL~scQn~DGGfGe~p~ 215 (377)
T 1n4q_B 164 VPE---------------GSE-----NDMRFVYCASCICYMLNNWS--------GMDMKKAISYIRRSMSYDNGLAQGAG 215 (377)
T ss_dssp STT---------------CCC-----CBHHHHHHHHHHHHHTTCGG--------GSCHHHHHHHHHHTBCTTSSBBSSTT
T ss_pred ccC---------------CCc-----chhHHHHHHHHHHHHhcCCC--------hHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 100 111 11334555566666655421 13589999999999999999987654
Q ss_pred CC-ccchHHHHHHHHHHcCCCCCC--cHHHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHH
Q 010631 359 VC-FTYGTWFGVKGLVAAGMNYSN--SSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALI 435 (505)
Q Consensus 359 ~~-~~y~T~~al~aL~~~G~~~~~--~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~ 435 (505)
.. ..-.|++|+.+|..+|..... ...++|+++||+++| +||+.... +...++.-+.|++-+|.
T Consensus 216 ~ESh~g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~rQ--~gGf~GR~------------nK~~D~CYSfWv~~~l~ 281 (377)
T 1n4q_B 216 LESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRP------------NKPVDTCYSFWVGATLK 281 (377)
T ss_dssp SCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB--SSSBCSST------------TSCCCTTHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHhcCcccccchhhHHHHHHHHHhcC--CCCcCCCC------------CcchhHHHHHHHHHHHH
Confidence 32 222388889899888754111 127899999999999 88886531 22457778899999888
Q ss_pred HcCCCCCCcHHHHHHHHHHHhcCcC-CCCCCCCcccceeccccccccCCchhhHHHHHHHHH
Q 010631 436 DAGQAETDPTPLHRAARYLINSQME-NGDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGEY 496 (505)
Q Consensus 436 ~ag~~~~d~~~i~rgv~~L~~~Q~~-~G~w~~~~~~g~f~~~~~~~y~~y~~~fpl~AL~~y 496 (505)
..+... ....++..+||+++|++ +|++...+ |..|. .|-++|.|-+|+..
T Consensus 282 iL~~~~--~~d~~~l~~fil~cQ~~~~GGf~~~p--~~~~D-------~~HT~~~LagLsl~ 332 (377)
T 1n4q_B 282 LLKIFQ--YTNFEKNRNYILSTQDRLVGGFAKWP--DSHPD-------ALHAYFGICGLSLM 332 (377)
T ss_dssp HTTCGG--GSCHHHHHHHHHTTBCTTTCSBCSST--TSCCB-------HHHHHHHHHHHHHT
T ss_pred HhCCcc--ccCHHHHHHHHHHHcCCCCCCcCCCC--CCCCC-------HHHHHHHHHHHHhc
Confidence 877542 11256789999999998 89987654 22332 34567777777753
No 17
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=99.78 E-value=3.8e-18 Score=202.53 Aligned_cols=270 Identities=13% Similarity=0.132 Sum_probs=188.4
Q ss_pred HHHHHHHHHhcCCC-cc----hHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCC--CCCCchhhHHHHH
Q 010631 165 TAFAVQAIISTNLV-EE----YGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADH--GWPISDCTSEGLK 237 (505)
Q Consensus 165 Ta~a~~AL~~ag~~-~~----~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~--~~pd~d~Ta~al~ 237 (505)
.-++...|...+.- ++ ....|++++++|++.|..| |||++....+ ..++.+.||.+++
T Consensus 960 ~l~~~~yL~~t~q~~~~~~~~a~~~i~~g~~~ll~~q~~d---------------Ggf~~f~~~~~~~~~s~wlTAyv~~ 1024 (1451)
T 4acq_A 960 NIYVLDYLNETQQLTPEIKSKAIGYLNTGYQRQLNYKHYD---------------GSYSTFGERYGRNQGNTWLTAFVLK 1024 (1451)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHGGGBCTT---------------SCBCSSTTGGGCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhcCCC---------------CCeeeccCCCCCCCCchhHHHHHHH
Confidence 33455556666542 21 2345789999999999876 7777654322 4468999999999
Q ss_pred HhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccc--cCCCcchHHHHH
Q 010631 238 ASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVID--YPCVECTSASIQ 315 (505)
Q Consensus 238 aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d--~~~~~~Ta~vl~ 315 (505)
+|..+++. ..+++..+++|++||++.|++||+|..... + +.+.|.+ .+.+..||++|.
T Consensus 1025 ~l~~a~~~------~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~-----~---------~~~~m~gg~~~~~~lTAyvl~ 1084 (1451)
T 4acq_A 1025 TFAQARAY------IFIDEAHITQALIWLSQRQKDNGCFRSSGS-----L---------LNNAIKGGVEDEVTLSAYITI 1084 (1451)
T ss_dssp HHHHHTTT------SCCCTHHHHHHHHHHHHTEETTTEECCCCC-----C---------SCGGGCCSCSCHHHHHHHHHH
T ss_pred HHHHhhhh------cccCHHHHHHHHHHHHhhcccCCcccccCc-----c---------cchhhcCCCCCCccchHHHHH
Confidence 99877642 245788999999999999999999963221 1 1111111 133567999999
Q ss_pred HHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccc--cCCCcccCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Q 010631 316 ALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQEL--DGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLL 393 (505)
Q Consensus 316 aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~--DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~ 393 (505)
+|...+.. .. .+.|++|++||+++... +|.. ....|..+.+..||+.+|.. +..+.+++-|.
T Consensus 1085 aL~~~g~~--~~-----~~~i~~A~~~L~~~~~~~~~~~~-----~~~~y~~AllAyAlal~g~~----~~~~~~l~~L~ 1148 (1451)
T 4acq_A 1085 ALLEIPLT--VT-----HPVVRNALFCLESAWKTAQEGDH-----GSHVYTKALLAYAFALAGNQ----DKRKEVLKSLN 1148 (1451)
T ss_dssp HHHHTTCC--TT-----CHHHHHHHHHHHHHHHHHTSSCS-----SSTHHHHHHHHHHHHHHTCH----HHHHHHHHHHH
T ss_pred HHHHcCCC--CC-----CHHHHHHHHHHHHhhhhcccccc-----cCChHHHHHHHHHHHhcCCh----hHHHHHHHHHH
Confidence 99998742 11 36899999999876322 1211 13478888888999988753 34555888888
Q ss_pred hccCCCCC---CCcCccccccc--ccccCCCCCCchhHHHHHHHHHHHcCCCC--CCcHHHHHHHHHHHhcCcCCCCCCC
Q 010631 394 SKQRPSGG---WGESYLSCQKK--VYSNLEGDRSHVVNTAWAMLALIDAGQAE--TDPTPLHRAARYLINSQMENGDYPQ 466 (505)
Q Consensus 394 ~~Q~~DGg---Wge~~~s~~~~--~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~--~d~~~i~rgv~~L~~~Q~~~G~w~~ 466 (505)
+....+|+ |++...++... .|.+ ......+..||||||||+.++... .|.+.+.+.++||.++|+.+|+|..
T Consensus 1149 ~~a~~~~~~~~W~~~~~~~~~~~~~~~~-~~~s~~vE~TayaLLall~~~~~~~~~d~~~a~~iv~WL~~qr~~~Ggf~S 1227 (1451)
T 4acq_A 1149 EEAVKKDNSVHWERPQKPKAPVGHFYEP-QAPSAEVEMTSYVLLAYLTAQPAPTSEDLTSATNIVKWITKQQNAQGGFSS 1227 (1451)
T ss_dssp HHCCBCSSCBCCCCCCCSSSCSSSTTCC-CTTGGGGTHHHHHHHHHHCCSSCCCHHHHHHHHTTHHHHTTCCCTTSCCSS
T ss_pred HHhhccCCceecCCCCCCcccccccccc-CCchHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHcCCCCCCccc
Confidence 88777776 98765433221 2222 112457889999999999886421 1223578999999999999999999
Q ss_pred CcccceeccccccccCCchhhHHHHHHHHHHHHhhh
Q 010631 467 EEIMGVFNRNCMISYSAYRNIFPIWALGEYRCRVLE 502 (505)
Q Consensus 467 ~~~~g~f~~~~~~~y~~y~~~fpl~AL~~y~~~~~~ 502 (505)
++. +++.|.||++|..+...
T Consensus 1228 TQd----------------Tv~aL~ALa~Y~~~~~~ 1247 (1451)
T 4acq_A 1228 TQD----------------TVVALHALSKYGAATFT 1247 (1451)
T ss_dssp HHH----------------HHHHHHHHHHHHHHHCC
T ss_pred HHH----------------HHHHHHHHHHHHHhcCC
Confidence 987 47999999999987654
No 18
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.78 E-value=3.7e-18 Score=169.26 Aligned_cols=201 Identities=18% Similarity=0.116 Sum_probs=141.8
Q ss_pred hHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHH
Q 010631 181 YGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLY 260 (505)
Q Consensus 181 ~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~ 260 (505)
....|+++++++++.|+.| |||+..... .++.+.||+|+++|..+.+. ..++++.++
T Consensus 36 ~~~~i~~g~~~~l~~q~~d---------------Ggf~~f~~~--~~s~wlTa~v~~~l~~a~~~------~~v~~~~i~ 92 (277)
T 1qqf_A 36 ALELIKKGYTQQLAFKQPI---------------SAYAAFNNR--PPSTWLTAYVSRVFSLAANL------IAIDSQVLC 92 (277)
T ss_dssp HHHHHHHHHHHHHTTBCTT---------------SCBCSSTTS--CCCHHHHHHHHHHHHHHTTT------SCCCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC---------------CCccccCCC--CccHHHHHHHHHHHHHHhhc------CCCCHHHHH
Confidence 4567899999999999876 677655432 36889999999999877642 145678999
Q ss_pred HHHHHHHh-cccCCcceeeeecccccchhcccCcccccCCcccc-cCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHH
Q 010631 261 DSVNVIFS-LQNADGGFATYELMRSYPWLEVLNPAETFGDIVID-YPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKR 338 (505)
Q Consensus 261 ~Av~~Ll~-~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d-~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~r 338 (505)
+|++||.+ .|++||+|.....-. ..+..|..... .+.+..|+.|+.+|...+...+. ......+.|++
T Consensus 93 ~a~~~L~~~~Q~~dG~f~~~~~~~---------~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~-~~~~~~~~i~~ 162 (277)
T 1qqf_A 93 GAVKWLILEKQKPDGVFQEDGPVI---------HQEMIGGFRNTKEADVSLTAFVLIALQEARDICEG-QVNSLPGSINK 162 (277)
T ss_dssp HHHHHHHHHHBCTTSCBCCSSCCS---------CGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTT-TCTTHHHHHHH
T ss_pred HHHHHHHHhccCCCCCccCCcccc---------chhhcCCCCCCccCccchHHHHHHHHHhhhhcccc-CCCchHHHHHH
Confidence 99999996 999999996432100 00111111000 12245699999999987542100 00123578999
Q ss_pred HHHHHHHhccc---------------------------------cCCCcccCCCC--ccchHHHHHHHHHHcCCCCCCcH
Q 010631 339 AVKFIEKIQEL---------------------------------DGSWYGSWGVC--FTYGTWFGVKGLVAAGMNYSNSS 383 (505)
Q Consensus 339 av~~L~~~Q~~---------------------------------DG~W~g~wg~~--~~y~T~~al~aL~~~G~~~~~~~ 383 (505)
|++||.++|++ ||.|.+.++.. .+..|+++|.+|..++.. +
T Consensus 163 A~~~L~~~~~~~~~~y~~a~~ayAl~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~----~ 238 (277)
T 1qqf_A 163 AGEYLEASYLNLQRPYTVAIAGYALALMNKLEEPYLTKFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKDF----D 238 (277)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHTTCCCTTHHHHHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTCT----T
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCCh----h
Confidence 99999998764 44443333332 567899999999998753 4
Q ss_pred HHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHc
Q 010631 384 SIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDA 437 (505)
Q Consensus 384 ~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~a 437 (505)
.+.+.++||.+.|+++|||+. ...|+.||.||...
T Consensus 239 ~~~~~v~wL~~qq~~~Ggw~s-------------------Tq~T~~aL~AL~~y 273 (277)
T 1qqf_A 239 SVPPVVRWLNDERYYGGGYGS-------------------TQATFMVFQALAQY 273 (277)
T ss_dssp SHHHHHHHHHHCCCCTTSTTC-------------------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHccCCCCCeec-------------------chHHHHHHHHHHHH
Confidence 688999999999999999964 25799999999764
No 19
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.76 E-value=1.3e-17 Score=167.95 Aligned_cols=220 Identities=18% Similarity=0.101 Sum_probs=149.9
Q ss_pred hhHHHHHHHHHHhcCC----Cc----chHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhH
Q 010631 162 LWDTAFAVQAIISTNL----VE----EYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTS 233 (505)
Q Consensus 162 vwDTa~a~~AL~~ag~----~~----~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta 233 (505)
++=+-++...|...+. .. +....|+++++++++.|..| |||+.... ..++.+.||
T Consensus 25 ~~P~~~~~~yl~~~~~~~~~~~~~~~~~~~~i~~g~~~~l~~q~~d---------------Ggf~~f~~--~~~s~wlTa 87 (310)
T 2wy7_A 25 MTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPS---------------SAFAAFVK--RAPSTWLTA 87 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHCTTHHHHHHHHHHHHHHHHHTTBCTT---------------SCBCSSTT--SCCCHHHHH
T ss_pred HhHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHHHHHHHhcCCC---------------CCcccCCC--CCccHHHHH
Confidence 3344455555555542 11 23467899999999999876 67765543 236889999
Q ss_pred HHHHHhHHhhhccccccCCccchHHHHHHHHHHHh-cccCCcceeeeecccccchhcccCcccccCCcccc-cCCCcchH
Q 010631 234 EGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFS-LQNADGGFATYELMRSYPWLEVLNPAETFGDIVID-YPCVECTS 311 (505)
Q Consensus 234 ~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~-~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d-~~~~~~Ta 311 (505)
+|+++|..+.+. ..++.+.+++|++||.+ .|++||+|........ .+..|..... .+.+..|+
T Consensus 88 ~v~~~l~~a~~~------~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~---------~~~~g~~~~~~~~~~~~ta 152 (310)
T 2wy7_A 88 YVVKVFSLAVNL------IAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIH---------QEMIGGLRNNNEKDMALTA 152 (310)
T ss_dssp HHHHHHHHHTTT------SCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSC---------GGGGGGGTTCSCHHHHHHH
T ss_pred HHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhhcCCCCccccCCCccC---------HhhcCCcccccccccchHH
Confidence 999999877642 13567899999999996 9999999964321110 0001111000 12245699
Q ss_pred HHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccc---------------------------------cCCCcccCC
Q 010631 312 ASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQEL---------------------------------DGSWYGSWG 358 (505)
Q Consensus 312 ~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~---------------------------------DG~W~g~wg 358 (505)
.|+.+|...+..... ......+.|++|++||.++|++ +|.|.+.++
T Consensus 153 ~vl~aL~~~~~~~~~-~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g~~~~~~l~~l~~~~~~~~~w~~~~ 231 (310)
T 2wy7_A 153 FVLISLQEAKDICEE-QVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPG 231 (310)
T ss_dssp HHHHHHHHHHHHHTT-TCTTHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHSBTTTBCCCSS
T ss_pred HHHHHHHhccccccc-CCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCCCCC
Confidence 999999987642100 0012357899999999998764 343433333
Q ss_pred CC--ccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHH
Q 010631 359 VC--FTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALID 436 (505)
Q Consensus 359 ~~--~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ 436 (505)
.. .+..|+++|.+|.+++.. +.+.++++||.++|+++|||+. ...|+.||.||..
T Consensus 232 ~~~~~ve~Ta~aLlal~~~~~~----~~~~~~v~wL~~qq~~~Ggw~s-------------------Tq~T~~aL~AL~~ 288 (310)
T 2wy7_A 232 KQLYNVEATSYALLALLQLKDF----DFVPPVVRWLNEQRYYGGGYGS-------------------TQATFMVFQALAQ 288 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCT----TTHHHHHHHHHHTTCCCCSTTC-------------------HHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHHhcCCh----hhHHHHHHHHHHccCCCCCeec-------------------cHHHHHHHHHHHH
Confidence 32 467899999999998753 4789999999999999999954 2578999999987
Q ss_pred c
Q 010631 437 A 437 (505)
Q Consensus 437 a 437 (505)
.
T Consensus 289 y 289 (310)
T 2wy7_A 289 Y 289 (310)
T ss_dssp H
T ss_pred H
Confidence 5
No 20
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=2e-18 Score=204.79 Aligned_cols=197 Identities=15% Similarity=0.188 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHH
Q 010631 257 KRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCI 336 (505)
Q Consensus 257 ~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i 336 (505)
+.+++|+++|+++|++||||++|+.. +++...|++|+.+|+.+.+..-.. -+..+
T Consensus 872 ~~i~~g~~rll~~q~~dGgf~~f~~~---------------------~~s~~lTa~v~~~l~~a~~~~~~v----~~~~l 926 (1325)
T 2pn5_A 872 NLLRQGYQNQMRYRQTDGSFGLWETT---------------------NGSVFLTAFVGTSMQTAVKYISDI----DAAMV 926 (1325)
T ss_dssp HHHHHHHHHHGGGBCTTSCBCSSSSS---------------------CCCHHHHHHHHHHHHHHTTTCSCS----CHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCeeccCCC---------------------CCCeeehHHHHHHHHHHHhhEEcC----CHHHH
Confidence 45788899999999999999987532 245678999999999986542101 13689
Q ss_pred HHHHHHHHHhccccCCCcccCCCC----------ccchHHHHHHHHHHcCCCC-CCcHHHHHHHHHHHhccCC-CCCCCc
Q 010631 337 KRAVKFIEKIQELDGSWYGSWGVC----------FTYGTWFGVKGLVAAGMNY-SNSSSIRKACEFLLSKQRP-SGGWGE 404 (505)
Q Consensus 337 ~rav~~L~~~Q~~DG~W~g~wg~~----------~~y~T~~al~aL~~~G~~~-~~~~~i~ra~~~L~~~Q~~-DGgWge 404 (505)
++|++||.+.|++||+|.+.|+.. ..+.|+++|.+|...|... ...+.+++|++||.++|+. +++|+.
T Consensus 927 ~~a~~~L~~~q~~dG~f~~~~~~~~~~~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~~~ 1006 (1325)
T 2pn5_A 927 EKALDWLASKQHFSGRFDKAGAEYHKEMQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDL 1006 (1325)
T ss_dssp HHHHHHHHHTCCTTSCCCCCSCCSCHHHHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHHHH
T ss_pred HHHHHHHHhhhccCCCccccccccChhhcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHHHH
Confidence 999999999999999998876532 2445788888998776421 1346799999999999887 889977
Q ss_pred Cccccc--------------------------ccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcC
Q 010631 405 SYLSCQ--------------------------KKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQ 458 (505)
Q Consensus 405 ~~~s~~--------------------------~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q 458 (505)
...++. +..|+ ...+++.+|||||+||+.++.. ..+.++++||+++|
T Consensus 1007 a~~ayaL~l~g~~~~~~~l~~L~~~~~~~~~~~~~~w---~~~s~ve~tA~aLlall~~~~~----~~~~~~v~wL~~q~ 1079 (1325)
T 2pn5_A 1007 SIATYAMMLNGHTMKEEALNKLIDMSFIDADKNERFW---NTTNPIETTAYALLSFVMAEKY----TDGIPVMNWLVNQR 1079 (1325)
T ss_dssp HHHHHHHHHHTCTTHHHHHHHHHHTCEEETTTTEEEC---CSSSHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCchHHHHHHHHHhhhhhccCCCcccC---CCCCchHHHHHHHHHHhhhccc----hhhHHHHHHHHhcc
Confidence 644210 02222 1246788999999999998643 35789999999999
Q ss_pred cCCCCCCCCcccceeccccccccCCchhhHHHHHHHHHHHHhh
Q 010631 459 MENGDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGEYRCRVL 501 (505)
Q Consensus 459 ~~~G~w~~~~~~g~f~~~~~~~y~~y~~~fpl~AL~~y~~~~~ 501 (505)
+.+|+|.+++.| +++|+||++|.+...
T Consensus 1080 ~~~g~w~sTq~T----------------~~aL~AL~~y~~~~~ 1106 (1325)
T 2pn5_A 1080 YVTGSFPSTQDT----------------FVGLKALTKMAEKIS 1106 (1325)
T ss_dssp CTTSSCSSHHHH----------------HHHHHHHHHHHHHHS
T ss_pred CCCCCccchHHH----------------HHHHHHHHHHHHHcC
Confidence 999999998764 699999999987653
No 21
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=99.75 E-value=9.3e-18 Score=191.99 Aligned_cols=200 Identities=19% Similarity=0.170 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHH
Q 010631 257 KRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCI 336 (505)
Q Consensus 257 ~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i 336 (505)
+.+++++++++++|++||||++|... +++...|++|+.+|+.+.+... .....+
T Consensus 299 ~~i~~g~~rll~~Q~~DGsfs~w~~~---------------------~~s~wlTAyv~~~l~~a~~~~~-----v~~~~i 352 (915)
T 2hr0_B 299 ELIKKGYTQQLAFRQPSSAFAAFVKR---------------------APSTWLTAYVVKVFSLAVNLIA-----IDSQVL 352 (915)
T ss_dssp HHHHHHHHHHGGGCCTTTCCBSSSSS---------------------CBCHHHHHHHHHHHHTTTTTSC-----CCHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCccccCCC---------------------CCcceehHHHHHHHHHhhhcCC-----CCHHHH
Confidence 46788999999999999999987532 2445689999999998875321 114689
Q ss_pred HHHHHHHHH-hccccCCCcccCCCC--------------ccchHHHHHHHHHHcCCC-----CCCcHHHHHHHHHHHhcc
Q 010631 337 KRAVKFIEK-IQELDGSWYGSWGVC--------------FTYGTWFGVKGLVAAGMN-----YSNSSSIRKACEFLLSKQ 396 (505)
Q Consensus 337 ~rav~~L~~-~Q~~DG~W~g~wg~~--------------~~y~T~~al~aL~~~G~~-----~~~~~~i~ra~~~L~~~Q 396 (505)
++|++||.+ .|.+||+|.+.|++. ..+.|++++.+|..+|.. ...++.+++|++||.+++
T Consensus 353 ~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~ 432 (915)
T 2hr0_B 353 CGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANY 432 (915)
T ss_dssp HHHHHHHHHHHBCTTSCBCCCSCCSSSCCCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHhhccCCCccccCccccchhhcCCccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhh
Confidence 999999995 999999998877542 245689999999998642 135678999999999987
Q ss_pred CC-CCCCCcCccc-------------------c-cccccccCCCC-CCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Q 010631 397 RP-SGGWGESYLS-------------------C-QKKVYSNLEGD-RSHVVNTAWAMLALIDAGQAETDPTPLHRAARYL 454 (505)
Q Consensus 397 ~~-DGgWge~~~s-------------------~-~~~~y~~~~~~-~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L 454 (505)
.. +++|+....+ . .+..|+.-.++ .+++.+|||||+||+.++..+ .+.++++||
T Consensus 433 ~~~~~~y~~a~layAL~l~g~~a~~~l~~L~~~~~~~~~w~~~~~~~~~ve~TayaLlall~~~~~~----~~~~~v~wL 508 (915)
T 2hr0_B 433 MNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDFD----FVPPVVRWL 508 (915)
T ss_dssp GGCCSHHHHHHHHHHHHTTTCCCHHHHHHHHHTSBTTTBCCCSSCHHHHHHHHHHHHHHHHHTTCTT----THHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCCCCCCCCccchHHHHHHHHHHHhcCChh----hHHHHHHHH
Confidence 65 2322211100 0 01222210111 126789999999999988642 378999999
Q ss_pred HhcCcCCCCCCCCcccceeccccccccCCchhhHHHHHHHHHHHHhhh
Q 010631 455 INSQMENGDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGEYRCRVLE 502 (505)
Q Consensus 455 ~~~Q~~~G~w~~~~~~g~f~~~~~~~y~~y~~~fpl~AL~~y~~~~~~ 502 (505)
+++|+.+|+|.+++. +++.|+||+.|..+.+.
T Consensus 509 ~~qq~~~Ggw~STQd----------------T~~Al~AL~~y~~~~~~ 540 (915)
T 2hr0_B 509 NEQRYYGGGYGSTQA----------------TFMVFQALAQYQKDAPD 540 (915)
T ss_dssp HTCCCSSSSCCSHHH----------------HHHHHHHHHHHHHHCCC
T ss_pred HhcccCCCCccchhh----------------HHHHHHHHHHHHHHcCc
Confidence 999999999998865 57999999999877644
No 22
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=99.70 E-value=2.7e-16 Score=165.15 Aligned_cols=294 Identities=12% Similarity=0.074 Sum_probs=185.4
Q ss_pred HHHHHhhhhhceeeeCCCceeecCCCCChhHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccccccCCC
Q 010631 134 FKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHIS 213 (505)
Q Consensus 134 ~~~~~~~l~~~~~~~~~g~~~q~~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~ 213 (505)
..+|++.+.+.+-.- ...++..+.+.+|-.=+++.+|.-.|..-+ .....++++||+++|+++
T Consensus 63 ~~~Hi~yl~~~L~~L--P~~y~~~Dasr~wl~Yw~l~aL~LLg~~ld-~~~~~~~I~~Ils~Q~~d-------------- 125 (520)
T 3q7a_B 63 KQEHTQFLASSFFQL--PGKFVSLDASRPWLVFWTVHSLDLLGVALD-QGTKDRVVSTLLHFLSPK-------------- 125 (520)
T ss_dssp HHHHHHHHHHHHSCB--CGGGGGGGGGHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHHTTBCTT--------------
T ss_pred HHHHHHHHHHHhhhC--ChhhhhcccchHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCC--------------
Confidence 568888888765211 223334446789998899999988774333 456889999999999875
Q ss_pred CCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccch--HHHHHHHHHHHhcccCCcceeeeecccccchhccc
Q 010631 214 KGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIET--KRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVL 291 (505)
Q Consensus 214 ~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~--~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~ 291 (505)
||++.......+|.+.+|..|+.+|..+....+. ...+. ...+++++||.++|++||||..- .
T Consensus 126 -GGFgg~p~~~~~~hla~TysAV~aL~ilg~~~p~---~~~~~Id~~r~k~v~fL~slQ~~DGSF~g~------~----- 190 (520)
T 3q7a_B 126 -GGFGGGPANSQIPHLLPTYASVCSLAIAGNDSST---GGWKDLAAARQSIYEFFMRCKRPDGGFVVC------E----- 190 (520)
T ss_dssp -SSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSSTT---SBHHHHHHTHHHHHHHHHHHBCTTSCBBSS------T-----
T ss_pred -CCCCCCCCCCCCCcHHHHHHHHHHHHHhCccccc---hhhhhhhhHHHHHHHHHHHHhCCCCCEecC------C-----
Confidence 5555433223458899999999999887653221 11112 22678999999999999999521 0
Q ss_pred CcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCccc---------------
Q 010631 292 NPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGS--------------- 356 (505)
Q Consensus 292 ~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~--------------- 356 (505)
+|. .++..|-.++.+|..++... ...++++++||++.|+.||||++.
T Consensus 191 -----wGe-----~Dir~TY~Al~~L~lLg~~~--------~~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~ 252 (520)
T 3q7a_B 191 -----GGE-----VDVRGTYCLLVVATLLDIIT--------PELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFP 252 (520)
T ss_dssp -----TCC-----BCHHHHHHHHHHHHHHTCCC--------HHHHTTHHHHHHTTBCTTSSBCSCEEEEC----------
T ss_pred -----CCC-----chHHHHHHHHHHHHHcCCCC--------hHHHHHHHHHHHHhcCCCCCccCcccccccccccccccc
Confidence 111 12445666777777666421 257999999999999999999871
Q ss_pred --------CCCCccch--HHHHHHHHHHcCCCCC----CcHHHHHHHHHHHhccC---CCCCCCcCcccccccccccCCC
Q 010631 357 --------WGVCFTYG--TWFGVKGLVAAGMNYS----NSSSIRKACEFLLSKQR---PSGGWGESYLSCQKKVYSNLEG 419 (505)
Q Consensus 357 --------wg~~~~y~--T~~al~aL~~~G~~~~----~~~~i~ra~~~L~~~Q~---~DGgWge~~~s~~~~~y~~~~~ 419 (505)
-+ .-.++ |..+|.+|...|.... ....+++.++||.++|. ++||+.....-
T Consensus 253 ~~rp~~~~Pg-~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~~RQ~~~~e~GGF~GR~NK----------- 320 (520)
T 3q7a_B 253 TSEPSCRVSM-AEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRTNK----------- 320 (520)
T ss_dssp --CCSEEEEC-SCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHHHTBCCGGGTTCBBSSTTS-----------
T ss_pred ccccccCCCC-CccchhHHHHHHHHHHHhccccccccccccCHHHHHHHHHHhCCcccCCCcccCCCCC-----------
Confidence 11 12222 6777888887765310 22357889999999997 46998654211
Q ss_pred CCCchhHHHH-----HHHHHH-Hc-------CC----------CC-------CCcHHHHHHHHHHH-hcCcCC---CCCC
Q 010631 420 DRSHVVNTAW-----AMLALI-DA-------GQ----------AE-------TDPTPLHRAARYLI-NSQMEN---GDYP 465 (505)
Q Consensus 420 ~~s~~~~Ta~-----ALlaL~-~a-------g~----------~~-------~d~~~i~rgv~~L~-~~Q~~~---G~w~ 465 (505)
-.++.-+.| +|+.-. .. .. .. ...-..++..+||+ .+|.+. ||+.
T Consensus 321 -lvD~CYSfWvggsl~iL~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~l~d~~~L~~yIL~~~Q~~~~~~GGf~ 399 (520)
T 3q7a_B 321 -LVDGCYSWWVGGGAPVAEELVRREKSRKVKKSRIEVFEEEKEGDWEDVPPIPPIFNRVALQEFTLVAAQQDPGSTGGLR 399 (520)
T ss_dssp -CBCTTHHHHTGGGHHHHHHHHHHHHHHHC---------------------CCCSSCHHHHHHHHHHTTBCCTTSSCCBC
T ss_pred -CCchhhhhHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccCHHHHHHHHHHHccCCCCCCCCCC
Confidence 122222333 333211 00 00 00 00001456788998 578887 9988
Q ss_pred CCcccceeccccccccCCchhhHHHHHHHHHHHH
Q 010631 466 QEEIMGVFNRNCMISYSAYRNIFPIWALGEYRCR 499 (505)
Q Consensus 466 ~~~~~g~f~~~~~~~y~~y~~~fpl~AL~~y~~~ 499 (505)
..+- ..|. .|-++|.|-+|+.-++.
T Consensus 400 DkPg--~~pD-------~yHT~y~LaGLSl~qh~ 424 (520)
T 3q7a_B 400 DKPG--KRPD-------QYHTCNNLSGLSIAQHK 424 (520)
T ss_dssp SSTT--SCCC-------HHHHHHHHHHHHHHHSC
T ss_pred CCCC--CCcc-------hhHHHHHHHHHHHhCCC
Confidence 7652 2232 35678999999876543
No 23
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=99.64 E-value=1.7e-15 Score=154.58 Aligned_cols=203 Identities=12% Similarity=0.119 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHhcccCCcceeeeecccccch--hc-cc----------Cc------ccccCCcccccCCCcchHHHHHHH
Q 010631 257 KRLYDSVNVIFSLQNADGGFATYELMRSYPW--LE-VL----------NP------AETFGDIVIDYPCVECTSASIQAL 317 (505)
Q Consensus 257 ~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~--l~-~~----------~~------~e~f~~~~~d~~~~~~Ta~vl~aL 317 (505)
+..++..+.|+..|.++|||...- +..... -+ .. .+ .+.+. ....+...+.|+.+|.+|
T Consensus 81 ~~A~~iAd~ll~~Q~~~GGW~kn~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~T~DnddTa~vl~aL 158 (408)
T 1r76_A 81 KAARHVADVIVSFQTPAGGWGKNQ-PRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDW-HYVGTIDNDATVTEIRFL 158 (408)
T ss_dssp HHHHHHHHHHHHHCCTTSCCCSSC-CSSSCCCCTTCCSSCCCCCCCC---------CCCCC-SSSSBCGGGTTHHHHHHH
T ss_pred HHHHHHHHHHHHccccCCCCCCcc-ccccccchhhhhcccccccccccccccchhhccccc-CCCCCCCCchHHHHHHHH
Confidence 446888999999999999997521 111000 00 00 00 00000 112233357899999999
Q ss_pred HHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCccc---------hHHHHHHHHHHcCCC----------
Q 010631 318 TSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTY---------GTWFGVKGLVAAGMN---------- 378 (505)
Q Consensus 318 ~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y---------~T~~al~aL~~~G~~---------- 378 (505)
..+.........+.+.+++.||++||++.|.+||||+..+..+..| .|+.+|..|..++..
T Consensus 159 ~rv~~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~~~~~~~~~ 238 (408)
T 1r76_A 159 AQVVSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPA 238 (408)
T ss_dssp HHHHHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHHHHhccCcccccchh
Confidence 9876531100234577899999999999999999998765443222 388888888777652
Q ss_pred --CCCcHHHHHHHHHHHhccCC-CCCCC---cCccc-----ccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCc---
Q 010631 379 --YSNSSSIRKACEFLLSKQRP-SGGWG---ESYLS-----CQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDP--- 444 (505)
Q Consensus 379 --~~~~~~i~ra~~~L~~~Q~~-DGgWg---e~~~s-----~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~--- 444 (505)
....++++||++||++.|.+ ||.|- -.+.. ..-..|.+ ..-+..+|+++|++||....+ ++
T Consensus 239 ~~~~~~~av~Rgi~~Ll~~Qe~~dGsw~rWg~qY~ygT~~Pa~aRsYE~---psLs~~esa~il~~LM~~~~~--~~~~~ 313 (408)
T 1r76_A 239 IRTRALEATNAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEP---AALSSTESARILLFLMEIEAP--SDAVK 313 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCSBCCCSTTCC---SCEEHHHHHHHHHHHTTSSSC--CHHHH
T ss_pred hhhhHHHHHHHHHHHHHHhhcccCCcccchhcccccccCcchhhhccCC---ccccHHHHHHHHHHHccCCCC--CHHHH
Confidence 02458999999999999999 99864 21100 00111211 122568899999999988764 33
Q ss_pred HHHHHHHHHHHhcCcCCCCCCC
Q 010631 445 TPLHRAARYLINSQMENGDYPQ 466 (505)
Q Consensus 445 ~~i~rgv~~L~~~Q~~~G~w~~ 466 (505)
++|++||+||.++|++||+|..
T Consensus 314 ~aI~~Av~WL~s~Q~~dg~w~~ 335 (408)
T 1r76_A 314 QAIRGGVAWLNTSVIRDRAWVK 335 (408)
T ss_dssp HHHHHHHHHHHHSCCCC-----
T ss_pred HHHHHHHHHHHHhhcCCCceee
Confidence 3699999999999999999974
No 24
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.63 E-value=5.8e-16 Score=159.53 Aligned_cols=197 Identities=17% Similarity=0.080 Sum_probs=134.3
Q ss_pred CCCCCCcccCCCCCCchhhHHHHHHhHHhhh---ccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcc
Q 010631 214 KGAWPFSTADHGWPISDCTSEGLKASLLLSK---LSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEV 290 (505)
Q Consensus 214 ~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~---~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~ 290 (505)
|+||++++.+..+|++ .++..|..... ..+.. .....+.+++|++||+++|++||||++|+.++
T Consensus 51 P~Gc~EQ~~s~~~P~~----~v~~~l~~~~~w~~~~~~~--~~~~~~~i~~g~~~ll~~Q~~dGgf~~~~~~~------- 117 (367)
T 1hzf_A 51 PRGCGEQTMIYLAPTL----AASRYLDKTEQWSTLPPET--KDHAVDLIQKGYMRIQQFRKADGSYAAWLSRD------- 117 (367)
T ss_dssp CCSSHHHHHHHHHHHH----HHHHHHHHTTCSTTSCTTH--HHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSC-------
T ss_pred CCCCHHHHHHHHHHHH----HHHHHHHHhhhcccCChhH--HHHHHHHHHHHHHHHHhccCCCCCeeccCCCC-------
Confidence 3899999877777744 44444432111 11000 01124679999999999999999999876432
Q ss_pred cCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCc---------
Q 010631 291 LNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCF--------- 361 (505)
Q Consensus 291 ~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~--------- 361 (505)
+....|++|+++|..+++.+.. .+..++||++||++.|++||+|++.|.+.+
T Consensus 118 --------------~~~~lTa~v~~~l~~a~~~~~v-----~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~~gg~~~ 178 (367)
T 1hzf_A 118 --------------SSTWLTAFVLKVLSLAQEQVGG-----SPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVG 178 (367)
T ss_dssp --------------CCHHHHHHHHHHHHHHGGGTCC-----CHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGGGGGGSS
T ss_pred --------------CcHHHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHhhccCCCcccccccccccccCCCCC
Confidence 2345799999999998865321 146899999999999999999999876544
Q ss_pred ----cchHHHHHHHHHHcCCCCC----------CcHHHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHH
Q 010631 362 ----TYGTWFGVKGLVAAGMNYS----------NSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNT 427 (505)
Q Consensus 362 ----~y~T~~al~aL~~~G~~~~----------~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~T 427 (505)
++.|++++.||..+|.... .++.|+||++||.++...+ ..+++..
T Consensus 179 ~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~~~~---------------------~~~~y~~ 237 (367)
T 1hzf_A 179 NDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAG---------------------LLGAHAA 237 (367)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHT---------------------CCCHHHH
T ss_pred CcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhhhcc---------------------cCCHHHH
Confidence 5679999999998874211 2468999999999872110 1245677
Q ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCC---CCC
Q 010631 428 AWAMLALIDAGQAETDPTPLHRAARYLINSQMENGD---YPQ 466 (505)
Q Consensus 428 a~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~---w~~ 466 (505)
|.+..||..++.. .......++-|.+.-..+|+ |.+
T Consensus 238 Al~ayAL~l~~~~---~~~~~~~~~~L~~~a~~~~~~~~W~~ 276 (367)
T 1hzf_A 238 AITAYALTLTKAP---ADLRGVAHNNLMAMAQETGDNLYWGS 276 (367)
T ss_dssp HHHHHHHHHTTCC---HHHHHHHHHHHHTTCEECSSCEECC-
T ss_pred HHHHHHHHhcCCc---HHHHHHHHHHHHHHhhhcCCCCccCC
Confidence 7777778888754 12234566777776444443 765
No 25
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=99.60 E-value=1e-13 Score=155.98 Aligned_cols=279 Identities=17% Similarity=0.122 Sum_probs=182.7
Q ss_pred CChhHHHHHHHHHHhcCC----Ccc----hHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchh
Q 010631 160 SQLWDTAFAVQAIISTNL----VEE----YGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDC 231 (505)
Q Consensus 160 s~vwDTa~a~~AL~~ag~----~~~----~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~ 231 (505)
+...-+.++..+|.+.+. .++ ....|+++++-|++.|..| |||++..... ++...
T Consensus 337 s~~~p~i~v~~yl~~t~q~~~l~~~~~~~a~~~l~~gyqrll~~q~~D---------------Gsfs~w~~~~--~s~wL 399 (767)
T 4fxk_B 337 IYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKAD---------------GSYAAWLSRD--SSTWL 399 (767)
T ss_dssp GGTHHHHHHHHHHHHTCTTTTSCSSHHHHHHHHHHHHHHHHTTTBCTT---------------SCBBSSSSSC--BCHHH
T ss_pred HhhhhhhhHHHHHHhhhhhcccCHHHHHHHHHHHHHHHHHHHHhhcCC---------------CCcccCCCCC--CCchh
Confidence 555667778888888764 222 1234677777777777765 6665543322 57899
Q ss_pred hHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchH
Q 010631 232 TSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTS 311 (505)
Q Consensus 232 Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta 311 (505)
||+|++.|..+++. ..++.+.+.+++.||++.|.+||.|.....- +-+ +..|+...+.+.+..||
T Consensus 400 TAyV~~~l~~A~~~------i~id~~~i~~a~~wL~~~Q~~~G~f~e~g~~----~~~-----~~~gg~~~~~~~~~ltA 464 (767)
T 4fxk_B 400 TAFVLKVLSLAQEQ------VGGSPEKLQETSNWLLSQQQADGSFQDPCPV----LDR-----SMQGGLVGNDETVALTA 464 (767)
T ss_dssp HHHHHHHHHHTCSS------SSCCHHHHHHHHHHHHHTBCTTSCBCCSSCS----CCC-----CCCSSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh------cCcchHHHHHHHHHHHHhhhhcccchhcchh----cch-----hhcCCcCCCccchhHHH
Confidence 99999999877542 1356789999999999999999999643211 000 11111111122356799
Q ss_pred HHHHHHHHhhhhCCCC----chhhhHHHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHHHHHHcCCCCCCcHHHHH
Q 010631 312 ASIQALTSFKKLYPGH----WQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRK 387 (505)
Q Consensus 312 ~vl~aL~~~~~~~~~~----~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~r 387 (505)
+++.+|...+....+. ....+...|.+|++||.++...+ ....|+.+.+..||..+|.. ......
T Consensus 465 yvliaL~e~~~~~~~~~~~~~~~~~~~~i~ka~~~L~~~~~~~--------~~~~y~~Al~ayaL~l~~~~---~~~~~~ 533 (767)
T 4fxk_B 465 FVTIALHHGLAVFQDEGAEPLKQRVEASISKANSFLGEKASAG--------LLGAHAAAITAYALSLTKAP---VDLLGV 533 (767)
T ss_dssp HHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHHHHHHHHTTSC--------CCCHHHHHHHHHHHHHHTCT---THHHHH
T ss_pred HHHHHHHhcCCccccchhhhhHhHHHHHHHHHHHHHHHHhhcc--------cCCHHHHHHHHHHHHHcCCc---HHHHHH
Confidence 9999998876543221 11345678999999998876432 22468888888888888754 445556
Q ss_pred HHHHHHhccCCCCC---CCcCcccccc-----------cccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Q 010631 388 ACEFLLSKQRPSGG---WGESYLSCQK-----------KVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARY 453 (505)
Q Consensus 388 a~~~L~~~Q~~DGg---Wge~~~s~~~-----------~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~ 453 (505)
+.+-|.+....+|+ |.....+... ..+.+ ......+..|||||+++...... .+.+.+.++|
T Consensus 534 ~~~~L~~~a~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~VEttayaLla~l~~~~~---~~~a~~iv~W 609 (767)
T 4fxk_B 534 AHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMP-QAPALWIETTAYALLHLLLHEGK---AEMADQASAW 609 (767)
T ss_dssp HHHHHHTTCCBCSSCBCCCCCCCCCGGGGCCSSSCCCSSSCBC-CCCHHHHHHHHHHHHHHHHHTSS---CHHHHHHHHH
T ss_pred HHHHHHhhcEEcCCeeEEeccCCCccccccccccccccccccc-ccchHHHHHHHHHHHHHHhcCCc---hhHHHHHHHH
Confidence 66777766554433 5432211100 00111 00112477899999999876532 3448899999
Q ss_pred HHhcCcCCCCCCCCcccceeccccccccCCchhhHHHHHHHHHHHHhh
Q 010631 454 LINSQMENGDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGEYRCRVL 501 (505)
Q Consensus 454 L~~~Q~~~G~w~~~~~~g~f~~~~~~~y~~y~~~fpl~AL~~y~~~~~ 501 (505)
|+++|+.+|+|..++. +++.|.||+.|..+.+
T Consensus 610 L~~Qr~~~Ggf~STQd----------------Tv~AL~ALa~y~~~~~ 641 (767)
T 4fxk_B 610 LTRQGSFQGGFRSTQD----------------TVIALDALSAYWIASH 641 (767)
T ss_dssp HHHTCCTTSSCSSHHH----------------HHHHHHHHHHHHHHTC
T ss_pred HHHhhcCCCCCcCHHH----------------HHHHHHHHHHHHHhcc
Confidence 9999999999999876 5799999999987654
No 26
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=99.48 E-value=3.3e-13 Score=154.43 Aligned_cols=250 Identities=17% Similarity=0.107 Sum_probs=159.0
Q ss_pred CCCHHHHHHHhh--hhhceeeeCCCceeecCCCCChhHHHHHHHHHHhcCC----Cc----chHHHHHHHHHHHHhcccC
Q 010631 129 PNSEAFKLHIPR--INDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNL----VE----EYGATLKKAHKYIKDSQVL 198 (505)
Q Consensus 129 ~~~~~~~~~~~~--l~~~~~~~~~g~~~q~~~~s~vwDTa~a~~AL~~ag~----~~----~~~~~l~~A~~~L~~~Q~~ 198 (505)
|..+.+...+.. |.. |..-|-|.-=|. -|...=..++...|.+.+. .. +....|++++++|++.|..
T Consensus 238 ~~~~~l~~~~~~~~l~~-L~~yPyGC~EQ~--~s~~~P~l~~~~yL~~~~q~~~~~~~~~~~a~~~i~~g~~rll~~Q~~ 314 (915)
T 2hr0_B 238 PVAQMTEDAVDAERLKH-LIVTPSGCGEQN--MIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQP 314 (915)
T ss_dssp SSSHHHHHHHSSSSGGG-GCSSCCCSTTGG--GGGTHHHHHHHHHHHHTTCHHHHCTHHHHHHHHHHHHHHHHHGGGCCT
T ss_pred cchhhhhcccchhhHHH-HHhCCCCcHHHH--HHhhhhHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 555666554321 322 222354521121 3445555566666776653 11 1235678899999999987
Q ss_pred CCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHh-cccCCccee
Q 010631 199 EDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFS-LQNADGGFA 277 (505)
Q Consensus 199 ~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~-~Qn~dGgw~ 277 (505)
| |||++.... .++.+.||++++.|..+.+. + .++...+.+|++||.+ .|++||+|.
T Consensus 315 D---------------Gsfs~w~~~--~~s~wlTAyv~~~l~~a~~~-----~-~v~~~~i~~al~~L~~~~Q~~dG~f~ 371 (915)
T 2hr0_B 315 S---------------SAFAAFVKR--APSTWLTAYVVKVFSLAVNL-----I-AIDSQVLCGAVKWLILEKQKPDGVFQ 371 (915)
T ss_dssp T---------------TCCBSSSSS--CBCHHHHHHHHHHHHTTTTT-----S-CCCHHHHHHHHHHHHHHHBCTTSCBC
T ss_pred C---------------CCccccCCC--CCcceehHHHHHHHHHhhhc-----C-CCCHHHHHHHHHHHHHhhccCCCccc
Confidence 6 666655432 36789999999998876532 1 4677899999999995 999999996
Q ss_pred eeecccccchhcccCcccccCCcccc-cCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccc-------
Q 010631 278 TYELMRSYPWLEVLNPAETFGDIVID-YPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQEL------- 349 (505)
Q Consensus 278 ~~~~~~~~~~l~~~~~~e~f~~~~~d-~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~------- 349 (505)
....-. ..+.-|+.... .+.+..|+++|.+|...+.... .......+.|++|++||.+.+..
T Consensus 372 ~~~~~~---------~~~m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~-~~~~~~~~~i~~A~~yL~~~~~~~~~~y~~ 441 (915)
T 2hr0_B 372 EDAPVI---------HQEMIGGLRNNNEKDMALTAFVLISLQEAKDICE-EQVNSLPGSITKAGDFLEANYMNLQRSYTV 441 (915)
T ss_dssp CCSCCS---------SSCCCCSCCCCTTHHHHHHHHHHHHHHHHTTTST-TTCTTHHHHHHHHHHHHHHHGGGCCSHHHH
T ss_pred cCcccc---------chhhcCCccCccccccccHHHHHHHHHhcccccc-cCcccchHHHHHHHHHHHHhhhccCCHHHH
Confidence 432110 00001110000 1234578999999998764210 00112457899999999987654
Q ss_pred --------------------------cCCCcccCCCC--ccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCC
Q 010631 350 --------------------------DGSWYGSWGVC--FTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGG 401 (505)
Q Consensus 350 --------------------------DG~W~g~wg~~--~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGg 401 (505)
+|.|...++.. .+..|++||++|.+.+.. +.+.++++||.+.|+.+||
T Consensus 442 a~layAL~l~g~~a~~~l~~L~~~~~~~~~w~~~~~~~~~ve~TayaLlall~~~~~----~~~~~~v~wL~~qq~~~Gg 517 (915)
T 2hr0_B 442 AIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDF----DFVPPVVRWLNEQRYYGGG 517 (915)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHTSBTTTBCCCSSCHHHHHHHHHHHHHHHHHTTCT----TTHHHHHHHHHTCCCSSSS
T ss_pred HHHHHHHHHcCChHHHHHHHHHhhccCCCCCCCCCCCccchHHHHHHHHHHHhcCCh----hhHHHHHHHHHhcccCCCC
Confidence 33322222222 355789999999998753 3588999999999999999
Q ss_pred CCcCcccccccccccCCCCCCchhHHHHHHHHHHHc
Q 010631 402 WGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDA 437 (505)
Q Consensus 402 Wge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~a 437 (505)
|+.+ -.|+.||.||...
T Consensus 518 w~ST-------------------QdT~~Al~AL~~y 534 (915)
T 2hr0_B 518 YGST-------------------QATFMVFQALAQY 534 (915)
T ss_dssp CCSH-------------------HHHHHHHHHHHHH
T ss_pred ccch-------------------hhHHHHHHHHHHH
Confidence 9542 4599999999865
No 27
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=99.41 E-value=7.4e-12 Score=151.28 Aligned_cols=263 Identities=20% Similarity=0.166 Sum_probs=172.3
Q ss_pred CChhHHHHHHHHHHhcCCC----c----chHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchh
Q 010631 160 SQLWDTAFAVQAIISTNLV----E----EYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDC 231 (505)
Q Consensus 160 s~vwDTa~a~~AL~~ag~~----~----~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~ 231 (505)
|...=..++...|.+.+.- . +....|+.+++-+++.|..| |||++.... .++...
T Consensus 1015 s~~~P~~~~~~yL~~~~q~~~~~~~~~~~~~~~i~~g~~r~l~~q~~d---------------Gsfs~w~~~--~~s~wL 1077 (1661)
T 2b39_A 1015 IGMTPTVIAVHYLDSTDQWEKFGLEKRQESLELIRKGYTQQLAFRQKS---------------SAYAAFQYR--PPSTWL 1077 (1661)
T ss_dssp GGTHHHHHHHHHHHHHTCGGGSCSHHHHHHHHHHHHHHHHHHTTBCTT---------------SCBCSSTTS--CCCHHH
T ss_pred hhcccHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHhhcCC---------------CCccccCCC--CCchhh
Confidence 4444455566666665421 1 12345666777777777765 566554432 357899
Q ss_pred hHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHh-cccCCcceeeeecccccchhcccCcccccCCccc-ccCCCcc
Q 010631 232 TSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFS-LQNADGGFATYELMRSYPWLEVLNPAETFGDIVI-DYPCVEC 309 (505)
Q Consensus 232 Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~-~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~-d~~~~~~ 309 (505)
||++++.|..+++. + .+++..+.+|++||.+ .|++||.|.....- +- .+.-|+... ..+.+..
T Consensus 1078 TAyv~~~l~~A~~~-----~-~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~----~~-----~~~~gg~~~~~~~~~~l 1142 (1661)
T 2b39_A 1078 TAYVVKVFALAANL-----I-AIDSKDLCETVKWLILEKQKPDGIFQEDGPV----IH-----QEMIGGFRDTREKDVSL 1142 (1661)
T ss_dssp HHHHHHHHHHHTTT-----S-CCCHHHHHHHHHHHHHHTBCTTSCBCCCSCC----CC-----TTSCCCTTCCTTSSHHH
T ss_pred hHHHHHHHHhhhhc-----c-cCCHHHHHHHHHHhhHhhCCCCCccccccce----ec-----hhhcCCccccccCcccc
Confidence 99999999887642 1 4678999999999995 99999999632110 00 000111100 1113456
Q ss_pred hHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHH
Q 010631 310 TSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKAC 389 (505)
Q Consensus 310 Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~ 389 (505)
||+++.+|...+.... .........+.+|++||.++... + ...|+.+.+..||..+|.. .++++
T Consensus 1143 tAyvl~aL~~~~~~~~-~~~~~~~~~i~~a~~yL~~~~~~---~------~~~y~~A~layAL~l~g~~------a~~~l 1206 (1661)
T 2b39_A 1143 TAFVLIALHEAKDICE-AQVNSLGRSIAKAGDFLENHYRE---L------RRPYTVAIAAYALALLGKL------EGDRL 1206 (1661)
T ss_dssp HHHHHHHHHHTTTTTT-TTCSSHHHHHHHHHHHHHHHTTT---C------CSHHHHHHHHHHHHHTTCC------CHHHH
T ss_pred HHHHHHHHHhcccccc-ccCcchhHHHHHHHHHHHHhhhc---c------CCHHHHHHHHHHHHHcCCc------HHHHH
Confidence 8999999988754210 01112457899999999876432 1 2467888888888888753 24556
Q ss_pred HHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCcc
Q 010631 390 EFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEI 469 (505)
Q Consensus 390 ~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~w~~~~~ 469 (505)
+.|.+.......|.... +...++..|||||++|+..+... . +.+.++||.++|+.+|+|..++.
T Consensus 1207 ~~L~~~~~~~~~W~~~~------------~~~~~vE~tayaLlall~~~~~~---~-~~~iv~wL~~qr~~~gg~~STqd 1270 (1661)
T 2b39_A 1207 TKFLNTAKEKNRWEEPN------------QKLYNVEATSYALLALLARKDYD---T-TPPVVRWLNEQRYYGGGYGSTQA 1270 (1661)
T ss_dssp HHHHHHSBTTTBCCCSS------------CHHHHHHHHHHHHHHHHHHTCTT---T-SHHHHHHHHHCCTBTTBBCSHHH
T ss_pred HHHHhhccCCCCCCCCC------------CCcchHHHHHHHHHHHHhcCChh---h-HHHHHHHHHhcccCCCCcccchH
Confidence 77777665333464310 11235778999999999987542 2 56789999999999999998865
Q ss_pred cceeccccccccCCchhhHHHHHHHHHHHHhhh
Q 010631 470 MGVFNRNCMISYSAYRNIFPIWALGEYRCRVLE 502 (505)
Q Consensus 470 ~g~f~~~~~~~y~~y~~~fpl~AL~~y~~~~~~ 502 (505)
+++.|.||+.|..+.+.
T Consensus 1271 ----------------T~~Al~AL~~y~~~~~~ 1287 (1661)
T 2b39_A 1271 ----------------TFMVFQALAQYQKDVPD 1287 (1661)
T ss_dssp ----------------HHHHHHHHHHHHHHSCC
T ss_pred ----------------HHHHHHHHHHHHHHcCc
Confidence 47999999999876543
No 28
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=99.38 E-value=3.8e-14 Score=169.18 Aligned_cols=222 Identities=21% Similarity=0.203 Sum_probs=0.0
Q ss_pred CCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHh-cccCCcceeeeecccccchhcccCc
Q 010631 215 GAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFS-LQNADGGFATYELMRSYPWLEVLNP 293 (505)
Q Consensus 215 GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~-~Qn~dGgw~~~~~~~~~~~l~~~~~ 293 (505)
|||++... ..++.+.||+|++.|..+++. +..+++..+.+|++||.+ .|++||+|.....- + +
T Consensus 1047 Gsfs~w~~--~~~stWLTAyV~k~f~~A~~~-----i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~~v----~-----~ 1110 (1642)
T 3prx_B 1047 HSYAAFTN--RASSSWLTAYVVKVFAMAAKM-----VAGISHEIICGGVRWLILNRQQPDGAFKENAPV----L-----S 1110 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeecCCC--CCCccccHHHHHHHHHHHHhh-----ccCCCHHHHHHHHHHHHhhccCCCCcccccccc----c-----c
Confidence 66665432 225789999999999876542 223788999999999998 89999999643211 0 0
Q ss_pred ccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHHHHH
Q 010631 294 AETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLV 373 (505)
Q Consensus 294 ~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~ 373 (505)
.+.-|+..-.-+.+..||+|+.||.+.+...+.. ...+..+|.+|+.||.++... ....|..+.+.+||+
T Consensus 1111 ~~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~-~~~~~~~i~~a~~~L~~~~~~---------~~~~Y~~Ai~aYAl~ 1180 (1642)
T 3prx_B 1111 GTMQGGIQGAEEEVYLTAFILVALLESKTICNDY-VNSLDSSIKKATNYLLKKYEK---------LQRPYTTALTAYALA 1180 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhccCCccCCCCcccchHHHHHHHHhcccccccc-cccchHHHHHHHHHHHHhhhc---------CCCHHHHHHHHHHHH
Confidence 0111111001124678999999999876431111 112346899999999876422 124677888888888
Q ss_pred HcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Q 010631 374 AAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARY 453 (505)
Q Consensus 374 ~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~ 453 (505)
.+|.. .. .+++-|.+. ..--|... .....++..||||||||+..+.. ....+.++|
T Consensus 1181 l~~~~--~~----~~l~~l~~~--~~~~W~~~------------~~~~~~VE~TaYaLLa~l~~~~~----~~a~~iv~W 1236 (1642)
T 3prx_B 1181 AADQL--ND----DRVLMAAST--GRDHWEEY------------NAHTHNIEGTSYALLALLKMKKF----DQTGPIVRW 1236 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcCCc--hH----HHHHHHHhc--CCCCCCCC------------CCchHHHHHHHHHHHHHhccCch----hhHHHHHHH
Confidence 88754 12 222223322 11124321 01134788999999999987654 236778999
Q ss_pred HHhcCcCCCCCCCCcccceeccccccccCCchhhHHHHHHHHHHHHhhh
Q 010631 454 LINSQMENGDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGEYRCRVLE 502 (505)
Q Consensus 454 L~~~Q~~~G~w~~~~~~g~f~~~~~~~y~~y~~~fpl~AL~~y~~~~~~ 502 (505)
|.++|+..|+|..++.| +..|.||++|..+.+.
T Consensus 1237 L~~qr~~~Ggf~STQdT----------------vvaLqALa~Y~~~~~~ 1269 (1642)
T 3prx_B 1237 LTDQNFYGETYGQTQAT----------------VMAFQALAEYEIQMPT 1269 (1642)
T ss_dssp -------------------------------------------------
T ss_pred HHHhccCCCcccCcHHH----------------HHHHHHHHHHHHhcCc
Confidence 99999999999999874 7999999999887653
No 29
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=99.37 E-value=2.1e-13 Score=135.41 Aligned_cols=169 Identities=12% Similarity=0.157 Sum_probs=99.7
Q ss_pred CCChhHHHHHHHHHHhcCC---CcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHH
Q 010631 159 GSQLWDTAFAVQAIISTNL---VEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEG 235 (505)
Q Consensus 159 ~s~vwDTa~a~~AL~~ag~---~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~a 235 (505)
..+.-||+.++++|..... .+.+++++.||++||+++|.++ |.|...++.. ++| ... --|.| |.|+.+
T Consensus 70 t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~n---GGWpqFdpd~--~~Y--l~~-IpFnD-Dvtarv 140 (332)
T 1gxm_A 70 TIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYST---GALPQFYPLK--GGY--SDH-ATFND-NGMAYA 140 (332)
T ss_dssp ECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTT---SCCBSEESCC--SGG--GGS-EECGG-GHHHHH
T ss_pred CccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCC---CCccccCCCc--ccc--ccc-CCcch-HHHHHH
Confidence 4677889999999987532 2357899999999999999986 4444333321 111 110 01234 789999
Q ss_pred HHHhHHhhhccccccCC-------ccchHHHHHHHHHHHhcccCCcceee-eecccccchhcccC-cccccCCcccccCC
Q 010631 236 LKASLLLSKLSSAIVGE-------PIETKRLYDSVNVIFSLQNADGGFAT-YELMRSYPWLEVLN-PAETFGDIVIDYPC 306 (505)
Q Consensus 236 l~aL~~~~~~~~~~~g~-------~~~~~~i~~Av~~Ll~~Qn~dGgw~~-~~~~~~~~~l~~~~-~~e~f~~~~~d~~~ 306 (505)
|..|..+........++ ....++++||++||++.|.++|||-. +... +...+..| .+..| +++.
T Consensus 141 LelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g~Wg~q--ydygT~~Pa~ARay-----E~ps 213 (332)
T 1gxm_A 141 LTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWCAQ--HGALDYQPKKARAY-----ELES 213 (332)
T ss_dssp HHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCCSE--ECTTTCCBCCCSTT-----CCSS
T ss_pred HHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcCeeccc--cccccccccccccc-----cccc
Confidence 99988774311100000 22457899999999999999999843 1110 00000000 01111 1111
Q ss_pred C--cchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccc
Q 010631 307 V--ECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQEL 349 (505)
Q Consensus 307 ~--~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~ 349 (505)
. -.++-+|..|... |. .++|..+|++|++||.+.|++
T Consensus 214 L~~~es~giv~~LM~~----~~--~~~v~~aI~~Av~WL~~~q~~ 252 (332)
T 1gxm_A 214 LSGSESVGVLAFLMTQ----PQ--TAEIEQAVRAGVAWFNSPRTY 252 (332)
T ss_dssp EETTTHHHHHHHHTTS----CC--CHHHHHHHHHHHHHHTCTTTS
T ss_pred hhHHHHHHHHHHhccC----CC--CHHHHHHHHHHHHHHHhcccc
Confidence 1 1122233333321 32 357778999999999999984
No 30
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.36 E-value=6.7e-11 Score=121.32 Aligned_cols=309 Identities=15% Similarity=0.137 Sum_probs=182.3
Q ss_pred HHHHHhhhhhceeeeCCCceeecCCCCChhHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccccccCCC
Q 010631 134 FKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHIS 213 (505)
Q Consensus 134 ~~~~~~~l~~~~~~~~~g~~~q~~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~ 213 (505)
..||++.+.+.+-.-+ ...+....+.+|-.=+++.+|.--|..+-.....++.++||.++|+.++. .
T Consensus 6 ~~kHiky~~~~L~~Lp--~~~~s~D~~R~~l~Yw~l~~L~lLg~~~~~~~~~~~~i~~i~~~q~~~~~-----------~ 72 (390)
T 3dra_B 6 INKHEKFFNRCLIGLP--STAQSEDSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRNFIINQFMIENN-----------Q 72 (390)
T ss_dssp HHHHHHHHHHHHHCCC--GGGGGGTTCHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHEEECS-----------S
T ss_pred HHHHHHHHHHHHHhCC--cchhhcchhhHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHhccccC-----------C
Confidence 4577777766432112 12233347889999999999988875421134466788999999986321 1
Q ss_pred CCCCCCcc----cCC--CCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhccc---C-Ccceeeee--c
Q 010631 214 KGAWPFST----ADH--GWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQN---A-DGGFATYE--L 281 (505)
Q Consensus 214 ~GgW~f~~----~~~--~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn---~-dGgw~~~~--~ 281 (505)
.||++-+. .++ ..|.+-.|=.||.+|..+... .. ..++ ..+.++||.++|+ + ||||.... .
T Consensus 73 ~gGF~g~~~~~~~g~~~~~~hl~~Ty~Al~~L~ilg~~--~~--~~vd---r~~i~~~l~~lQ~~~~~~dGsF~~~~~~~ 145 (390)
T 3dra_B 73 IISFRSTHYFQKTNQKYDCPNLSSTLFALYNLLILKSP--YH--TIIN---RKKIMNFLCKCQVKDGINKGGFVPTLYYN 145 (390)
T ss_dssp CEEECSSGGGGGSCTTTSCCBHHHHHHHHHHHHHTTCC--GG--GTCC---HHHHHHHHHHHBCCSSTTTTCBCSEEEEE
T ss_pred CCCcCCCccCCCCCCccCcccHHHHHHHHHHHHHhCch--hh--cccc---HHHHHHHHHHHhCCCCCCCCceeeecccc
Confidence 14443332 121 236777888888888766431 00 0122 4567899999999 6 89998432 0
Q ss_pred ccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhC--C-CCchhhh--HHHHHHHHHHHHHhccccCCCccc
Q 010631 282 MRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLY--P-GHWQEDV--DHCIKRAVKFIEKIQELDGSWYGS 356 (505)
Q Consensus 282 ~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~--~-~~~~~~i--~~~i~rav~~L~~~Q~~DG~W~g~ 356 (505)
..+..+ +.+|. .|--.++|...++ ..++... + +.+.+.. ..-++++++||.+.|+.|||+.+.
T Consensus 146 ~~dg~~-------~~~ge--~D~R~~YcA~~i~---~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~ 213 (390)
T 3dra_B 146 EENGDY-------KQYGE--PDLRVCYMALLIR---HLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSST 213 (390)
T ss_dssp TTTTEE-------EEESC--CCHHHHHHHHHHH---HHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSS
T ss_pred cccccc-------ccCCc--chHHHHHHHHHHH---HHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCC
Confidence 000000 00121 1221223333222 2222211 0 0000000 013789999999999999999875
Q ss_pred CCC-CccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccC----------------------------CCCCCCcCcc
Q 010631 357 WGV-CFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQR----------------------------PSGGWGESYL 407 (505)
Q Consensus 357 wg~-~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~----------------------------~DGgWge~~~ 407 (505)
-+. ...=.|..||.+|...|.. ...+.+.++||.++|. ++||+...
T Consensus 214 p~~EsH~G~TfCalaaL~lL~~~---~~d~~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR-- 288 (390)
T 3dra_B 214 IMDESHLGFTFCAIASLKLLNYP---LEKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGR-- 288 (390)
T ss_dssp TTSCCCHHHHHHHHHHHHHTTCC---GGGCHHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSS--
T ss_pred CCcccccchhHHHHHHHHHhCcc---cccHHHHHHHHHHcCccccccccccccccccccccccccccccccCCCccCC--
Confidence 442 1111277888999988865 2457789999999997 35676543
Q ss_pred cccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhc-CcC-CCCCCCCcccceeccccccccCCch
Q 010631 408 SCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINS-QME-NGDYPQEEIMGVFNRNCMISYSAYR 485 (505)
Q Consensus 408 s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~-Q~~-~G~w~~~~~~g~f~~~~~~~y~~y~ 485 (505)
++...++.-+.|++-+|...+....+....++..+||+++ |.+ .|++...+- ..|. .|-
T Consensus 289 ----------~nKl~D~CYS~Wv~~sL~iL~~~~~~l~d~~~l~~yiL~c~Q~~~~GGf~d~Pg--~~pD-------~yH 349 (390)
T 3dra_B 289 ----------ENKLSDTCYSWWCTGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQLFGGFGRDPD--STPD-------PMH 349 (390)
T ss_dssp ----------TTCCBCTHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHTTBCTTTCSBCSSTT--SCCC-------HHH
T ss_pred ----------CCCccchhHHHHHHHHHHHhccccccccCHHHHHHHHHHhccCCCCCCcCCCCC--CCCc-------hHH
Confidence 1234567778899888887773100111256788999997 554 899887542 2232 356
Q ss_pred hhHHHHHHHHHHH
Q 010631 486 NIFPIWALGEYRC 498 (505)
Q Consensus 486 ~~fpl~AL~~y~~ 498 (505)
++|.|-+|+....
T Consensus 350 T~~gLagLsl~~~ 362 (390)
T 3dra_B 350 SYLALASLSLWNH 362 (390)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC
Confidence 8899999998754
No 31
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=99.35 E-value=4.8e-11 Score=144.40 Aligned_cols=234 Identities=15% Similarity=0.120 Sum_probs=152.0
Q ss_pred CCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHh-cccCCcceeeeecccccchhcccCc
Q 010631 215 GAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFS-LQNADGGFATYELMRSYPWLEVLNP 293 (505)
Q Consensus 215 GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~-~Qn~dGgw~~~~~~~~~~~l~~~~~ 293 (505)
|||++. ....++...||++++.|..+++. + .++++.+.+|++||.+ .|++||.|..-... + .
T Consensus 1064 Gsfs~w--~~~~~s~wLTAyv~~~l~~A~~~-----~-~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~----~-----~ 1126 (1676)
T 3cu7_A 1064 YSYSVW--KGGSASTWLTAFALRVLGQVNKY-----V-EQNQNSICNSLLWLVENYQLDNGSFKENSQY----Q-----P 1126 (1676)
T ss_dssp SCBCSS--SSSCCCHHHHHHHHHHHHHHHTT-----S-CCCHHHHHHHHHHHHHHSBCTTSCBCCCSSC----C-----C
T ss_pred CCcccc--CCCCCcEEEeHHHHHHHHHHHhc-----c-cCCHHHHHHHHHHHHHhhCCCCCcccCCccc----c-----c
Confidence 777665 23346899999999999887652 1 4678999999999999 99999999532100 0 0
Q ss_pred ccccCCcc--cccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHHH
Q 010631 294 AETFGDIV--IDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKG 371 (505)
Q Consensus 294 ~e~f~~~~--~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~a 371 (505)
.+.-|+.. ...+.+..||+++.+|...+... ........+.+|++||.++... + ...|+.+.+..|
T Consensus 1127 ~~~~gg~~~~~~~~~~~ltAyvl~aL~~~~~~~---~~~~~~~~i~~a~~yL~~~~~~---~------~~~y~~A~lA~A 1194 (1676)
T 3cu7_A 1127 IKLQGTLPVEARENSLYLTAFTVIGIRKAFDIC---PLVKIDTALIKADNFLLENTLP---A------QSTFTLAISAYA 1194 (1676)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHTGGGS---CCHHHHHHHHHHHHHHHHHHSS---C------SCHHHHHHHHHH
T ss_pred hhhcCCcccccccCccccHHHHHHHHHhccccc---CCcccHHHHHHHHHHHHHhhhc---c------CCHHHHHHHHHH
Confidence 00011110 00012457899999998875421 0122456899999999876432 1 235777777778
Q ss_pred HHHcCCCCCCcHHHHHHHHHHHhccCCC-C-----CCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcH
Q 010631 372 LVAAGMNYSNSSSIRKACEFLLSKQRPS-G-----GWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPT 445 (505)
Q Consensus 372 L~~~G~~~~~~~~i~ra~~~L~~~Q~~D-G-----gWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~ 445 (505)
|..+|.. ....+++++.|.+....+ + .|...........|. .+...++..|||||++|+..+. ..
T Consensus 1195 l~l~g~~---~~~a~~~l~~L~~~a~~~~~~~~~~~w~~~~~~~~~~~~~--~~~~~~ve~tayaLlall~~~~----~~ 1265 (1676)
T 3cu7_A 1195 LSLGDKT---HPQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPN--TGTARMVETTAYALLTSLNLKD----IN 1265 (1676)
T ss_dssp HTTSCTT---CHHHHHHHHHHHHHCEEETTTTSEEECCSCSSCCSSCCCS--CCCHHHHHHHHHHHHHHHHTTC----HH
T ss_pred HHhcCCc---hhhHHHHHHHHHhhhhhccCCccccCCCCCCCCccccccC--CCccchHHHHHHHHHHHHhcCC----hh
Confidence 8777754 222566777777765522 2 454321100000000 0111256789999999999763 34
Q ss_pred HHHHHHHHHHhcCcCCCCCCCCcccceeccccccccCCchhhHHHHHHHHHHHHhhh
Q 010631 446 PLHRAARYLINSQMENGDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGEYRCRVLE 502 (505)
Q Consensus 446 ~i~rgv~~L~~~Q~~~G~w~~~~~~g~f~~~~~~~y~~y~~~fpl~AL~~y~~~~~~ 502 (505)
.+.+.++||.++|+.+|+|..++. +++.|.||++|..+...
T Consensus 1266 ~~~~iv~wL~~qr~~~Gg~~STQd----------------T~~Al~AL~~y~~~~~~ 1306 (1676)
T 3cu7_A 1266 YVNPVIKWLSEEQRYGGGFYSTQD----------------TINAIEGLTEYSLLVKQ 1306 (1676)
T ss_dssp HHHHHHHHHHHHSCSSSCCSTTTT----------------HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhccCCCCCccccHH----------------HHHHHHHHHHHHHHcCC
Confidence 478899999999999999999876 46999999999876543
No 32
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=99.34 E-value=9.6e-12 Score=147.67 Aligned_cols=216 Identities=13% Similarity=0.080 Sum_probs=146.1
Q ss_pred CChhHHHHHHHHHHhcCCCc-----chHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHH
Q 010631 160 SQLWDTAFAVQAIISTNLVE-----EYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSE 234 (505)
Q Consensus 160 s~vwDTa~a~~AL~~ag~~~-----~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~ 234 (505)
|...=..++...|.+.+.-. +....|++++++|+++|..| |||++.... .++.+.||.
T Consensus 844 s~~~p~~~~~~yl~~~~~~~~~~~~~~~~~i~~g~~rll~~q~~d---------------Ggf~~f~~~--~~s~~lTa~ 906 (1325)
T 2pn5_A 844 VKFVPNILVLDYLHAIGSKEQHLIDKATNLLRQGYQNQMRYRQTD---------------GSFGLWETT--NGSVFLTAF 906 (1325)
T ss_dssp GGTHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHGGGBCTT---------------SCBCSSSSS--CCCHHHHHH
T ss_pred HHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCC---------------CCeeccCCC--CCCeeehHH
Confidence 44455556666666665321 23456888999999999876 777765443 368899999
Q ss_pred HHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHH
Q 010631 235 GLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASI 314 (505)
Q Consensus 235 al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl 314 (505)
++++|..+++. +..++.+.+++|++||.+.|++||+|..-..... .+..|.+ + .....|++||
T Consensus 907 v~~~l~~a~~~-----~~~v~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~---------~~~~g~~--~-~~~~~tayvl 969 (1325)
T 2pn5_A 907 VGTSMQTAVKY-----ISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYH---------KEMQGGL--R-NGVALTSYVL 969 (1325)
T ss_dssp HHHHHHHHTTT-----CSCSCHHHHHHHHHHHHHTCCTTSCCCCCSCCSC---------HHHHCCS--S-TTHHHHHHHH
T ss_pred HHHHHHHHHhh-----EEcCCHHHHHHHHHHHHhhhccCCCccccccccC---------hhhcCcc--c-CCccccHHHH
Confidence 99999877642 2346778999999999999999999943211000 0001211 1 1234688888
Q ss_pred HHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccc-cCCCccc-----------------------------------CC
Q 010631 315 QALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQEL-DGSWYGS-----------------------------------WG 358 (505)
Q Consensus 315 ~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~-DG~W~g~-----------------------------------wg 358 (505)
.+|...+.... .....+++|++||.++|+. ++.|... |.
T Consensus 970 ~aL~~~g~~~~-----~~~~~i~~a~~~L~~~~~~~~~~~~~a~~ayaL~l~g~~~~~~~l~~L~~~~~~~~~~~~~~w~ 1044 (1325)
T 2pn5_A 970 MALLENDIAKA-----KHAEVIQKGMTYLSNQFGSINNAYDLSIATYAMMLNGHTMKEEALNKLIDMSFIDADKNERFWN 1044 (1325)
T ss_dssp HHHHTCHHHHH-----HTHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHTCTTHHHHHHHHHHTCEEETTTTEEECC
T ss_pred HHHhhCccccc-----ccHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcCCchHHHHHHHHHhhhhhccCCCcccCC
Confidence 89887654210 1135789999999998765 5555210 10
Q ss_pred -CCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHc
Q 010631 359 -VCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDA 437 (505)
Q Consensus 359 -~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~a 437 (505)
...+-.|+++|+||...+. .+.+.+.++||++.|+.+|||.. .-.|++||+||...
T Consensus 1045 ~~s~ve~tA~aLlall~~~~----~~~~~~~v~wL~~q~~~~g~w~s-------------------Tq~T~~aL~AL~~y 1101 (1325)
T 2pn5_A 1045 TTNPIETTAYALLSFVMAEK----YTDGIPVMNWLVNQRYVTGSFPS-------------------TQDTFVGLKALTKM 1101 (1325)
T ss_dssp SSSHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHTTCCTTSSCSS-------------------HHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHhhhcc----chhhHHHHHHHHhccCCCCCccc-------------------hHHHHHHHHHHHHH
Confidence 1122247899999998753 35778999999999999999954 24799999999865
No 33
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=99.33 E-value=1.5e-11 Score=146.27 Aligned_cols=166 Identities=16% Similarity=0.149 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHH
Q 010631 257 KRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCI 336 (505)
Q Consensus 257 ~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i 336 (505)
..+++|++||+++|++||||++|+..++ .+++....||+|+.+|+.+.+...- .+..+
T Consensus 983 ~~i~~g~~~ll~~q~~dGgf~~f~~~~~-----------------~~~~s~wlTAyv~~~l~~a~~~~~v-----~~~~l 1040 (1451)
T 4acq_A 983 GYLNTGYQRQLNYKHYDGSYSTFGERYG-----------------RNQGNTWLTAFVLKTFAQARAYIFI-----DEAHI 1040 (1451)
T ss_dssp HHHHHHHHHHGGGBCTTSCBCSSTTGGG-----------------CCCCCHHHHHHHHHHHHHHTTTSCC-----CTHHH
T ss_pred HHHHHHHHHHHhhcCCCCCeeeccCCCC-----------------CCCCchhHHHHHHHHHHHhhhhccc-----CHHHH
Confidence 3478999999999999999998853210 0124456899999999998754321 13689
Q ss_pred HHHHHHHHHhccccCCCcc--cC-------CC-CccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCC--CCCCCc
Q 010631 337 KRAVKFIEKIQELDGSWYG--SW-------GV-CFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRP--SGGWGE 404 (505)
Q Consensus 337 ~rav~~L~~~Q~~DG~W~g--~w-------g~-~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~--DGgWge 404 (505)
++|++||.++|++||+|.+ +| |. ..+|.|+++|.||..+|.. ..++.|++|++||.++... +|+
T Consensus 1041 ~~a~~wL~~~Q~~dG~f~~~g~~~~~~m~gg~~~~~~lTAyvl~aL~~~g~~-~~~~~i~~A~~~L~~~~~~~~~~~--- 1116 (1451)
T 4acq_A 1041 TQALIWLSQRQKDNGCFRSSGSLLNNAIKGGVEDEVTLSAYITIALLEIPLT-VTHPVVRNALFCLESAWKTAQEGD--- 1116 (1451)
T ss_dssp HHHHHHHHHTEETTTEECCCCCCSCGGGCCSCSCHHHHHHHHHHHHHHTTCC-TTCHHHHHHHHHHHHHHHHHTSSC---
T ss_pred HHHHHHHHhhcccCCcccccCcccchhhcCCCCCCccchHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhhhhccccc---
Confidence 9999999999999999984 33 11 4577899999999999987 6789999999999976321 111
Q ss_pred CcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCC---CCCC
Q 010631 405 SYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGD---YPQE 467 (505)
Q Consensus 405 ~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~---w~~~ 467 (505)
...+++..|....||..+|.. +..+..++-|.+....+|+ |...
T Consensus 1117 ---------------~~~~~y~~AllAyAlal~g~~----~~~~~~l~~L~~~a~~~~~~~~W~~~ 1163 (1451)
T 4acq_A 1117 ---------------HGSHVYTKALLAYAFALAGNQ----DKRKEVLKSLNEEAVKKDNSVHWERP 1163 (1451)
T ss_dssp ---------------SSSTHHHHHHHHHHHHHHTCH----HHHHHHHHHHHHHCCBCSSCBCCCCC
T ss_pred ---------------ccCChHHHHHHHHHHHhcCCh----hHHHHHHHHHHHHhhccCCceecCCC
Confidence 123467777777778888753 3355678888887666665 8654
No 34
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.33 E-value=1.2e-11 Score=126.77 Aligned_cols=189 Identities=18% Similarity=0.184 Sum_probs=127.8
Q ss_pred hhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCC----cceeeeecccccchhcccCcccccCCcccccC
Q 010631 230 DCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNAD----GGFATYELMRSYPWLEVLNPAETFGDIVIDYP 305 (505)
Q Consensus 230 d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~d----Ggw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~ 305 (505)
...=.+|.+|..+... .+..+..++-++||.++|.++ |||+...... +.+...+.+
T Consensus 33 ~l~Yw~l~~L~lLg~~-------~~~~~~~~~~i~~i~~~q~~~~~~~gGF~g~~~~~-------------~~g~~~~~~ 92 (390)
T 3dra_B 33 AIIYFCLHGLQLIQKF-------QFTNQELIYYRNFIINQFMIENNQIISFRSTHYFQ-------------KTNQKYDCP 92 (390)
T ss_dssp HHHHHHHHHHHHTTCC-------CCCHHHHHHHHHHHHHHHEEECSSCEEECSSGGGG-------------GSCTTTSCC
T ss_pred HHHHHHHHHHHHhCCC-------ccchHHHHHHHHHHHHHhccccCCCCCcCCCccCC-------------CCCCccCcc
Confidence 3344455566554321 123455667899999997653 8887532100 011012446
Q ss_pred CCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhcc---c-cCCCc-----c-------cCCCCccchHHHHH
Q 010631 306 CVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQE---L-DGSWY-----G-------SWGVCFTYGTWFGV 369 (505)
Q Consensus 306 ~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~---~-DG~W~-----g-------~wg~~~~y~T~~al 369 (505)
++..|-++|..|..++... . +.+ -.++.++||.+.|+ + ||||. + .+|...+=.+..|+
T Consensus 93 hl~~Ty~Al~~L~ilg~~~--~--~~v--dr~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~ 166 (390)
T 3dra_B 93 NLSSTLFALYNLLILKSPY--H--TII--NRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMAL 166 (390)
T ss_dssp BHHHHHHHHHHHHHTTCCG--G--GTC--CHHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCchh--h--ccc--cHHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchHHHHHHHH
Confidence 6778889999999887520 0 111 14678999999998 7 89998 2 25555555566666
Q ss_pred HHHHHcCCCCC-----------CcHHHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcC
Q 010631 370 KGLVAAGMNYS-----------NSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAG 438 (505)
Q Consensus 370 ~aL~~~G~~~~-----------~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag 438 (505)
..+...+.... ....++++++||+++|+.|||++.. ++.+|+.-.|..|+-+|...+
T Consensus 167 ~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~------------p~~EsH~G~TfCalaaL~lL~ 234 (390)
T 3dra_B 167 LIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSST------------IMDESHLGFTFCAIASLKLLN 234 (390)
T ss_dssp HHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSS------------TTSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCC------------CCcccccchhHHHHHHHHHhC
Confidence 66666665410 0234789999999999999999875 356788889999999999988
Q ss_pred CCCCCcHHHHHHHHHHHhcCc
Q 010631 439 QAETDPTPLHRAARYLINSQM 459 (505)
Q Consensus 439 ~~~~d~~~i~rgv~~L~~~Q~ 459 (505)
... . .+++.++||.++|.
T Consensus 235 ~~~--~-d~~~l~~WL~~RQ~ 252 (390)
T 3dra_B 235 YPL--E-KLKSTKEWLIHRQV 252 (390)
T ss_dssp CCG--G-GCHHHHHHHHTTBC
T ss_pred ccc--c-cHHHHHHHHHHcCc
Confidence 762 2 37889999999997
No 35
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.89 E-value=2.7e-08 Score=102.12 Aligned_cols=146 Identities=14% Similarity=0.058 Sum_probs=100.5
Q ss_pred hhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcch
Q 010631 231 CTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECT 310 (505)
Q Consensus 231 ~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~T 310 (505)
-.+.+++||.... ..+. .+.+..|+..|+ +++|. +|+ ...+|.|
T Consensus 138 q~sL~vLALC~~g--------~~v~----~~~v~~Ll~~~~-~~~~~-------------------~g~----~~sVDT~ 181 (414)
T 2bb6_A 138 QYSLGILALCVHQ--------KRVH----DSVVGKLLYAVE-HKPHL-------------------LQD----HVSVDTM 181 (414)
T ss_dssp HHHHHHHHHHHTT--------CCCC----HHHHHHHHHHHH-SSSCS-------------------CCT----TTHHHHH
T ss_pred HHHHHHHHHHHcC--------CCcc----HHHHHHHHHHhh-ccCcC-------------------CCC----cccccHH
Confidence 4677777776432 2232 236677777776 44542 111 1237889
Q ss_pred HHHHHHHHHhhhhCCCCc--hhhhHHHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHHHHHHcCCCCCC-cHHHHH
Q 010631 311 SASIQALTSFKKLYPGHW--QEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSN-SSSIRK 387 (505)
Q Consensus 311 a~vl~aL~~~~~~~~~~~--~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~-~~~i~r 387 (505)
|.++.||..+++.. .++ ...|+.+++..+++|.+.|++||+|+ .+|.|+.|++||.++|..+.. .....+
T Consensus 182 AMA~lAL~C~~~~~-~~~~~~~~i~~al~~l~~~l~~~Q~~dG~FG------N~~ST~lA~QAL~~~~~~~~~~~w~~~~ 254 (414)
T 2bb6_A 182 AMAGMAFSCLELSN-LNPKQRNRINLALKRVQEKILKAQTPEGYFG------NVYSTPLALQLLMGSLRPSVELGTACLK 254 (414)
T ss_dssp HHHHHHHHHHHHHT-SCGGGHHHHHHHHHHHHHHHHHTBCTTSCBS------STTTHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcC-CCcchHHHHHHHHHHHHHHHHHhhcCCCCcc------chhhHHHHHHHHHhcCCCcccccchHHH
Confidence 99999999988752 121 12333444444477888899999986 488899999999999886221 137788
Q ss_pred HHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCC
Q 010631 388 ACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQ 439 (505)
Q Consensus 388 a~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~ 439 (505)
++++|++ |++||+|+ ++..|+-+|.||.-.++
T Consensus 255 a~~~Ll~-q~~dG~F~-------------------np~ataQ~lpaL~gkty 286 (414)
T 2bb6_A 255 AKAALQA-SLQHKTFQ-------------------NPLMISQLLPVLNQKSY 286 (414)
T ss_dssp HHHHHHH-HHTTTCCC-------------------SHHHHHHHHHHTTTCCG
T ss_pred HHHHHHH-hccCCCCC-------------------ChHHHHHHHHHhcCCCc
Confidence 9999999 99999984 35689999999975444
No 36
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=98.87 E-value=7e-09 Score=105.85 Aligned_cols=128 Identities=15% Similarity=0.092 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhh---hCCCCc-hhhhH
Q 010631 258 RLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKK---LYPGHW-QEDVD 333 (505)
Q Consensus 258 ~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~---~~~~~~-~~~i~ 333 (505)
.-.+.+.-|+..|+.||++ | .+|.+|.++.||.-+.+ ...+.+ +.++.
T Consensus 131 v~~~~v~kLl~~~~~~g~~--------------------~--------sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~ 182 (399)
T 2pmv_A 131 ATLPIAVRFAKTLLANSSP--------------------F--------NVDTGAMATLALTCMYNKIPVGSEEGYRSLFG 182 (399)
T ss_dssp HHHHHHHHHHHHHHHCCSC--------------------C--------CHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCc--------------------c--------cchHHHHHHHHHHHHhhccccccchhhHHHHH
Confidence 3455677777778878653 2 26789999999998876 221112 24578
Q ss_pred HHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHHHHHHcCCCCCCcH-HHHHHHHHHHhccCCCCCCCcCccccccc
Q 010631 334 HCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSS-SIRKACEFLLSKQRPSGGWGESYLSCQKK 412 (505)
Q Consensus 334 ~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~~-~i~ra~~~L~~~Q~~DGgWge~~~s~~~~ 412 (505)
.+|++++++|.+.|++||+|+ .+|.|+.|++||...+.. ...+ ...+++++|++ |.+||+|+
T Consensus 183 ~ai~~~~~~l~~~q~~dG~fG------n~yST~LA~QAL~~~~~~-~~~~W~c~~al~~l~~-q~~~G~F~--------- 245 (399)
T 2pmv_A 183 QVLKDIVEKISMKIKDNGIIG------DIYSTGLAMQALSVTPEP-SKKEWNCKKTTDMILN-EIKQGKFH--------- 245 (399)
T ss_dssp HHHHHHHHHHTTSBCTTSCBS------SHHHHHHHHHHHHHCSSC-CSSCCCHHHHHHHHHH-HHTTTTTC---------
T ss_pred HHHHHHHHHHHHhhcCCCccc------ccccHHHHHHHHHhcCCC-ccccccHHHHHHHHHH-HhhCCCcC---------
Confidence 899999999999999999996 489999999999999985 3334 78899999999 99999984
Q ss_pred ccccCCCCCCchhHHHHHHHHHHHcCCC
Q 010631 413 VYSNLEGDRSHVVNTAWAMLALIDAGQA 440 (505)
Q Consensus 413 ~y~~~~~~~s~~~~Ta~ALlaL~~ag~~ 440 (505)
++..|+-+|.||.-.++.
T Consensus 246 ----------np~~taQilPaL~~ktyl 263 (399)
T 2pmv_A 246 ----------NPMSIAQILPSLKGKTYL 263 (399)
T ss_dssp ----------SHHHHHHHHHHHTTCCGG
T ss_pred ----------CHHHHHHHHHHhcCCCcc
Confidence 357899999999765544
No 37
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=98.81 E-value=2.4e-07 Score=104.08 Aligned_cols=232 Identities=16% Similarity=0.125 Sum_probs=135.3
Q ss_pred HHHHHhhhhhceeeeCCCc--eeecCCCCChhHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHhcccCCCCCCCcccccc
Q 010631 134 FKLHIPRINDYLWIAEDGM--KVQGYNGSQLWDTAFAVQAIISTNLV-EEYGATLKKAHKYIKDSQVLEDCPGNLDFWYR 210 (505)
Q Consensus 134 ~~~~~~~l~~~~~~~~~g~--~~q~~~~s~vwDTa~a~~AL~~ag~~-~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~ 210 (505)
++++++++..| +..||. +..+. .+.+|-||+++..|.++..- ......+.++++||.+.|..+ |.|....+
T Consensus 370 l~~gyqrll~~--q~~DGsfs~w~~~-~~s~wLTAyV~~~l~~A~~~i~id~~~i~~a~~wL~~~Q~~~---G~f~e~g~ 443 (767)
T 4fxk_B 370 IQKGYMRIQQF--RKADGSYAAWLSR-DSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQAD---GSFQDPCP 443 (767)
T ss_dssp HHHHHHHHTTT--BCTTSCBBSSSSS-CBCHHHHHHHHHHHHHTCSSSSCCHHHHHHHHHHHHHTBCTT---SCBCCSSC
T ss_pred HHHHHHHHHHh--hcCCCCcccCCCC-CCCchhHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhc---ccchhcch
Confidence 67788888887 567773 23333 57899999999999998421 122578999999999999876 55543211
Q ss_pred C---CCCCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCcc---chHHHHHHHHHHHhcccCCcceeeeecccc
Q 010631 211 H---ISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPI---ETKRLYDSVNVIFSLQNADGGFATYELMRS 284 (505)
Q Consensus 211 ~---~~~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~---~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~ 284 (505)
- ...||-.... .++..||.++.||+.............. ....+.+|++||....+. ++.
T Consensus 444 ~~~~~~~gg~~~~~-----~~~~ltAyvliaL~e~~~~~~~~~~~~~~~~~~~~i~ka~~~L~~~~~~--~~~------- 509 (767)
T 4fxk_B 444 VLDRSMQGGLVGND-----ETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKANSFLGEKASA--GLL------- 509 (767)
T ss_dssp SCCCCCCSSTTTHH-----HHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHHHHHHHHTTS--CCC-------
T ss_pred hcchhhcCCcCCCc-----cchhHHHHHHHHHHhcCCccccchhhhhHhHHHHHHHHHHHHHHHHhhc--ccC-------
Confidence 1 1122221100 1356799999998765432211101111 135688999999764321 110
Q ss_pred cchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccc--cC-CCcccCCC--
Q 010631 285 YPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQEL--DG-SWYGSWGV-- 359 (505)
Q Consensus 285 ~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~--DG-~W~g~wg~-- 359 (505)
.+...|.+..||+..+. + ......+.+-|.+.-.. ++ .|...-+.
T Consensus 510 ---------------------~~y~~Al~ayaL~l~~~--~-------~~~~~~~~~~L~~~a~~~~~~~~w~~~~~~~~ 559 (767)
T 4fxk_B 510 ---------------------GAHAAAITAYALSLTKA--P-------VDLLGVAHNNLMAMAQETGDNLYWGSVTGSQS 559 (767)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTC--T-------THHHHHHHHHHHTTCCBCSSCBCCCCCCCCCG
T ss_pred ---------------------CHHHHHHHHHHHHHcCC--c-------HHHHHHHHHHHHhhcEEcCCeeEEeccCCCcc
Confidence 01223333344554432 1 12334444445443322 22 22110000
Q ss_pred ------------------C---ccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccccccccccCC
Q 010631 360 ------------------C---FTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLE 418 (505)
Q Consensus 360 ------------------~---~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~ 418 (505)
. .+-.|+++|.++..... +.+.+.+.++||.+.|+..|||+.
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~s~~VEttayaLla~l~~~~---~~~~a~~iv~WL~~Qr~~~Ggf~S-------------- 622 (767)
T 4fxk_B 560 NAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEG---KAEMADQASAWLTRQGSFQGGFRS-------------- 622 (767)
T ss_dssp GGGCCSSSCCCSSSCBCCCCHHHHHHHHHHHHHHHHHTS---SCHHHHHHHHHHHHTCCTTSSCSS--------------
T ss_pred cccccccccccccccccccchHHHHHHHHHHHHHHhcCC---chhHHHHHHHHHHHhhcCCCCCcC--------------
Confidence 0 02247889988876543 356788999999999999999953
Q ss_pred CCCCchhHHHHHHHHHHHc
Q 010631 419 GDRSHVVNTAWAMLALIDA 437 (505)
Q Consensus 419 ~~~s~~~~Ta~ALlaL~~a 437 (505)
.-.|++||.||...
T Consensus 623 -----TQdTv~AL~ALa~y 636 (767)
T 4fxk_B 623 -----TQDTVIALDALSAY 636 (767)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHH
Confidence 24799999999774
No 38
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.80 E-value=4.4e-08 Score=100.54 Aligned_cols=148 Identities=11% Similarity=0.011 Sum_probs=102.9
Q ss_pred CCChhHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHHH
Q 010631 159 GSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKA 238 (505)
Q Consensus 159 ~s~vwDTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~a 238 (505)
....+..+++++||+..|.... .. .+..|+..|..++ +. .|+| -++|.||+|++|
T Consensus 133 ~tn~Yq~sL~vLALC~~g~~v~-~~----~v~~Ll~~~~~~~----~~-------~g~~---------~sVDT~AMA~lA 187 (414)
T 2bb6_A 133 RTSYYQYSLGILALCVHQKRVH-DS----VVGKLLYAVEHKP----HL-------LQDH---------VSVDTMAMAGMA 187 (414)
T ss_dssp SSCHHHHHHHHHHHHHTTCCCC-HH----HHHHHHHHHHSSS----CS-------CCTT---------THHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcCCCcc-HH----HHHHHHHHhhccC----cC-------CCCc---------ccccHHHHHHHH
Confidence 5678999999999999986442 22 4455666655321 10 1443 279999999999
Q ss_pred hHHhhhccccccCCccchHHHHHHH----HHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHH
Q 010631 239 SLLLSKLSSAIVGEPIETKRLYDSV----NVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASI 314 (505)
Q Consensus 239 L~~~~~~~~~~~g~~~~~~~i~~Av----~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl 314 (505)
|.-+.+... .+-..+.+.+|+ .+|++.|++||+|+. +..|+.+|
T Consensus 188 L~C~~~~~~----~~~~~~~i~~al~~l~~~l~~~Q~~dG~FGN----------------------------~~ST~lA~ 235 (414)
T 2bb6_A 188 FSCLELSNL----NPKQRNRINLALKRVQEKILKAQTPEGYFGN----------------------------VYSTPLAL 235 (414)
T ss_dssp HHHHHHHTS----CGGGHHHHHHHHHHHHHHHHHTBCTTSCBSS----------------------------TTTHHHHH
T ss_pred HHHHhhcCC----CcchHHHHHHHHHHHHHHHHHhhcCCCCccc----------------------------hhhHHHHH
Confidence 987654221 122356677777 888888999999851 34599999
Q ss_pred HHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHHHHHHc
Q 010631 315 QALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAA 375 (505)
Q Consensus 315 ~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~~~ 375 (505)
+||...+.. +. +-.-.+.+++++|++ |.+||+|.. .-.|+.+|.||.-.
T Consensus 236 QAL~~~~~~-~~----~~~w~~~~a~~~Ll~-q~~dG~F~n------p~ataQ~lpaL~gk 284 (414)
T 2bb6_A 236 QLLMGSLRP-SV----ELGTACLKAKAALQA-SLQHKTFQN------PLMISQLLPVLNQK 284 (414)
T ss_dssp HHHTTCSSC-CH----HHHHHHHHHHHHHHH-HHTTTCCCS------HHHHHHHHHHTTTC
T ss_pred HHHHhcCCC-cc----cccchHHHHHHHHHH-hccCCCCCC------hHHHHHHHHHhcCC
Confidence 999987642 11 111267899999999 999999962 23788888887643
No 39
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=98.66 E-value=3.8e-07 Score=110.35 Aligned_cols=225 Identities=12% Similarity=0.037 Sum_probs=135.1
Q ss_pred HHHHHhhhhhceeeeCCCc--eeecCCCCChhHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHh-cccCCCCCCCccccc
Q 010631 134 FKLHIPRINDYLWIAEDGM--KVQGYNGSQLWDTAFAVQAIISTNLV-EEYGATLKKAHKYIKD-SQVLEDCPGNLDFWY 209 (505)
Q Consensus 134 ~~~~~~~l~~~~~~~~~g~--~~q~~~~s~vwDTa~a~~AL~~ag~~-~~~~~~l~~A~~~L~~-~Q~~~~~~Gd~~~~~ 209 (505)
++.+++++..| +..||. +..+. .++.|-||+++..|.++..- .-....+.+|++||.+ .|..+ |.|....
T Consensus 1048 i~~g~~r~l~~--q~~dGsfs~w~~~-~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~---g~f~~~~ 1121 (1661)
T 2b39_A 1048 IRKGYTQQLAF--RQKSSAYAAFQYR-PPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPD---GIFQEDG 1121 (1661)
T ss_dssp HHHHHHHHHTT--BCTTSCBCSSTTS-CCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTT---SCBCCCS
T ss_pred HHHHHHHHHHh--hcCCCCccccCCC-CCchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCC---Ccccccc
Confidence 55677777776 567773 22232 57899999999999987421 1125789999999995 88765 6664321
Q ss_pred ---cCCCCCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccc
Q 010631 210 ---RHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYP 286 (505)
Q Consensus 210 ---~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~ 286 (505)
.....||... ...+++..||.++.+|........ .+.+.....+.+|++||.+.... +.
T Consensus 1122 ~~~~~~~~gg~~~----~~~~~~~ltAyvl~aL~~~~~~~~--~~~~~~~~~i~~a~~yL~~~~~~---~~--------- 1183 (1661)
T 2b39_A 1122 PVIHQEMIGGFRD----TREKDVSLTAFVLIALHEAKDICE--AQVNSLGRSIAKAGDFLENHYRE---LR--------- 1183 (1661)
T ss_dssp CCCCTTSCCCTTC----CTTSSHHHHHHHHHHHHHTTTTTT--TTCSSHHHHHHHHHHHHHHHTTT---CC---------
T ss_pred ceechhhcCCccc----cccCccccHHHHHHHHHhcccccc--ccCcchhHHHHHHHHHHHHhhhc---cC---------
Confidence 1112344321 011356679999999875432110 01122456899999999774221 10
Q ss_pred hhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCC--ccch
Q 010631 287 WLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVC--FTYG 364 (505)
Q Consensus 287 ~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~--~~y~ 364 (505)
.+...|.+..||+..+.. .++.++.|.+.......|... +.. .+-.
T Consensus 1184 -------------------~~y~~A~layAL~l~g~~------------a~~~l~~L~~~~~~~~~W~~~-~~~~~~vE~ 1231 (1661)
T 2b39_A 1184 -------------------RPYTVAIAAYALALLGKL------------EGDRLTKFLNTAKEKNRWEEP-NQKLYNVEA 1231 (1661)
T ss_dssp -------------------SHHHHHHHHHHHHHTTCC------------CHHHHHHHHHHSBTTTBCCCS-SCHHHHHHH
T ss_pred -------------------CHHHHHHHHHHHHHcCCc------------HHHHHHHHHhhccCCCCCCCC-CCCcchHHH
Confidence 012233333445544421 133455566655433344321 111 1235
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHc
Q 010631 365 TWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDA 437 (505)
Q Consensus 365 T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~a 437 (505)
|+++|++|...+.. +.+.+.++||.+.|+.+|||.. .-.|+.||.||...
T Consensus 1232 tayaLlall~~~~~----~~~~~iv~wL~~qr~~~gg~~S-------------------TqdT~~Al~AL~~y 1281 (1661)
T 2b39_A 1232 TSYALLALLARKDY----DTTPPVVRWLNEQRYYGGGYGS-------------------TQATFMVFQALAQY 1281 (1661)
T ss_dssp HHHHHHHHHHHTCT----TTSHHHHHHHHHCCTBTTBBCS-------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCh----hhHHHHHHHHHhcccCCCCccc-------------------chHHHHHHHHHHHH
Confidence 78999999887643 2467788999999999999953 24689999999875
No 40
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=98.55 E-value=1e-06 Score=106.81 Aligned_cols=228 Identities=15% Similarity=0.088 Sum_probs=132.1
Q ss_pred HHHHHhhhhhceeeeCCCc--eeecCCCCChhHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHh-cccCCCCCCCccccc
Q 010631 134 FKLHIPRINDYLWIAEDGM--KVQGYNGSQLWDTAFAVQAIISTNL-VEEYGATLKKAHKYIKD-SQVLEDCPGNLDFWY 209 (505)
Q Consensus 134 ~~~~~~~l~~~~~~~~~g~--~~q~~~~s~vwDTa~a~~AL~~ag~-~~~~~~~l~~A~~~L~~-~Q~~~~~~Gd~~~~~ 209 (505)
++.+++++..| +..||. +. +...++.|-||+++..|.++.. ..-....+.+|++||.+ .|..+ |.|....
T Consensus 1049 i~~g~~r~l~~--q~~dGsfs~w-~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~---g~f~~~~ 1122 (1676)
T 3cu7_A 1049 LKEGMLSIMSY--RNADYSYSVW-KGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDN---GSFKENS 1122 (1676)
T ss_dssp HHHHHHHGGGG--BCTTSCBCSS-SSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTT---SCBCCCS
T ss_pred HHHHHHHHhhc--cCCCCCcccc-CCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCC---CcccCCc
Confidence 55666777666 567773 22 3335789999999999998731 11125789999999999 88765 6654211
Q ss_pred cC---CCCCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccc
Q 010631 210 RH---ISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYP 286 (505)
Q Consensus 210 ~~---~~~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~ 286 (505)
+. ...||..-. ...+++..||.++.||....... +.......+.+|++||.+.... +
T Consensus 1123 ~~~~~~~~gg~~~~---~~~~~~~ltAyvl~aL~~~~~~~----~~~~~~~~i~~a~~yL~~~~~~---~---------- 1182 (1676)
T 3cu7_A 1123 QYQPIKLQGTLPVE---ARENSLYLTAFTVIGIRKAFDIC----PLVKIDTALIKADNFLLENTLP---A---------- 1182 (1676)
T ss_dssp SCCCCCCCSCHHHH---HHHHHHHHHHHHHHHHHHTGGGS----CCHHHHHHHHHHHHHHHHHHSS---C----------
T ss_pred cccchhhcCCcccc---cccCccccHHHHHHHHHhccccc----CCcccHHHHHHHHHHHHHhhhc---c----------
Confidence 10 011221100 00013456899999987543210 1112356789999999764221 1
Q ss_pred hhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhcc-ccC-----CCccc----
Q 010631 287 WLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQE-LDG-----SWYGS---- 356 (505)
Q Consensus 287 ~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~-~DG-----~W~g~---- 356 (505)
..+...|.+-.||+..+.. . ...+++++.|.+... .++ .|...
T Consensus 1183 ------------------~~~y~~A~lA~Al~l~g~~--~-------~~a~~~l~~L~~~a~~~~~~~~~~~w~~~~~~~ 1235 (1676)
T 3cu7_A 1183 ------------------QSTFTLAISAYALSLGDKT--H-------PQFRSIVSALKREALVKGNPPIYRFWKDNLQHK 1235 (1676)
T ss_dssp ------------------SCHHHHHHHHHHHTTSCTT--C-------HHHHHHHHHHHHHCEEETTTTSEEECCSCSSCC
T ss_pred ------------------CCHHHHHHHHHHHHhcCCc--h-------hhHHHHHHHHHhhhhhccCCccccCCCCCCCCc
Confidence 0011222222334333321 0 124556667776554 333 34221
Q ss_pred -C-----CC-CccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHH
Q 010631 357 -W-----GV-CFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAW 429 (505)
Q Consensus 357 -w-----g~-~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ 429 (505)
| +. ..+-.|+++|++|...+ +...+.+.++||.+.|+.+|||..+ -.|++
T Consensus 1236 ~~~~~~~~~~~~ve~tayaLlall~~~----~~~~~~~iv~wL~~qr~~~Gg~~ST-------------------QdT~~ 1292 (1676)
T 3cu7_A 1236 DSSVPNTGTARMVETTAYALLTSLNLK----DINYVNPVIKWLSEEQRYGGGFYST-------------------QDTIN 1292 (1676)
T ss_dssp SSCCCSCCCHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHSCSSSCCSTT-------------------TTHHH
T ss_pred cccccCCCccchHHHHHHHHHHHHhcC----ChhHHHHHHHHHHhccCCCCCcccc-------------------HHHHH
Confidence 1 10 01224788999998865 2456788899999999999999532 36889
Q ss_pred HHHHHHHc
Q 010631 430 AMLALIDA 437 (505)
Q Consensus 430 ALlaL~~a 437 (505)
||.||...
T Consensus 1293 Al~AL~~y 1300 (1676)
T 3cu7_A 1293 AIEGLTEY 1300 (1676)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 41
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=98.47 E-value=4.6e-07 Score=92.53 Aligned_cols=122 Identities=15% Similarity=0.089 Sum_probs=91.0
Q ss_pred chHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHHHHHHcCC---CC---C--
Q 010631 309 CTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGM---NY---S-- 380 (505)
Q Consensus 309 ~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~~~G~---~~---~-- 380 (505)
-=+..+.||...+.. .-.+.+.-|...|+.||+++ .+-.++.|++||..++. .. .
T Consensus 116 q~sL~vLALC~~~~~-----------v~~~~v~kLl~~~~~~g~~~------sVDT~AMa~LAL~C~~~~~~~~~~~~~~ 178 (399)
T 2pmv_A 116 GPSLAILALCQKNSE-----------ATLPIAVRFAKTLLANSSPF------NVDTGAMATLALTCMYNKIPVGSEEGYR 178 (399)
T ss_dssp HHHHHHHHHHHHCHH-----------HHHHHHHHHHHHHHHCCSCC------CHHHHHHHHHHHHHHHTBCCTTCCSSHH
T ss_pred hHHHHHHHHHhcCCC-----------CCHHHHHHHHHHHHccCCcc------cchHHHHHHHHHHHHhhccccccchhhH
Confidence 345677788777653 45666777778888887654 25567888999988765 21 1
Q ss_pred --CcHHHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcC
Q 010631 381 --NSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQ 458 (505)
Q Consensus 381 --~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q 458 (505)
.+.++++++++|++.|++||+||. .+.|+.|+.||+..+..+...=...+++++|++ |
T Consensus 179 ~~i~~ai~~~~~~l~~~q~~dG~fGn-------------------~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q 238 (399)
T 2pmv_A 179 SLFGQVLKDIVEKISMKIKDNGIIGD-------------------IYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-E 238 (399)
T ss_dssp HHHHHHHHHHHHHHTTSBCTTSCBSS-------------------HHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcccc-------------------cccHHHHHHHHHhcCCCccccccHHHHHHHHHH-H
Confidence 156788888999999999999864 589999999999998742222038899999999 9
Q ss_pred cCCCCCCCC
Q 010631 459 MENGDYPQE 467 (505)
Q Consensus 459 ~~~G~w~~~ 467 (505)
.++|.|...
T Consensus 239 ~~~G~F~np 247 (399)
T 2pmv_A 239 IKQGKFHNP 247 (399)
T ss_dssp HTTTTTCSH
T ss_pred hhCCCcCCH
Confidence 999999743
No 42
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=98.07 E-value=4.8e-07 Score=108.44 Aligned_cols=214 Identities=14% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHhhhhhceeeeCCCce-eecCCCCChhHHHHHHHHHHhcCCC-c-chHHHHHHHHHHHHh-cccCCCCCCCccccc
Q 010631 134 FKLHIPRINDYLWIAEDGMK-VQGYNGSQLWDTAFAVQAIISTNLV-E-EYGATLKKAHKYIKD-SQVLEDCPGNLDFWY 209 (505)
Q Consensus 134 ~~~~~~~l~~~~~~~~~g~~-~q~~~~s~vwDTa~a~~AL~~ag~~-~-~~~~~l~~A~~~L~~-~Q~~~~~~Gd~~~~~ 209 (505)
++.+.+++..| +.+||.+ .-+...+++|-||+++..|.+|..- . -....|.+|++||.+ +|..+ |.|....
T Consensus 1032 i~~Gyqr~l~y--q~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~d---G~F~e~~ 1106 (1642)
T 3prx_B 1032 IVTGYAQQMVY--KKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPD---GAFKENA 1106 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHh--cCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCC---Ccccccc
Confidence 45666677666 5667631 1122357899999999999987421 1 114689999999998 67665 6664432
Q ss_pred cC---CCCCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccC-Cccee----eeec
Q 010631 210 RH---ISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNA-DGGFA----TYEL 281 (505)
Q Consensus 210 ~~---~~~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~-dGgw~----~~~~ 281 (505)
+- .-.||-.- . . .++..||+++.||+......+. ........+.+|++||.+.-.. ..-+. +|..
T Consensus 1107 ~v~~~~m~Gg~~~--~-~--~~~~lTA~vliaL~e~~~~~~~--~~~~~~~~i~~a~~~L~~~~~~~~~~Y~~Ai~aYAl 1179 (1642)
T 3prx_B 1107 PVLSGTMQGGIQG--A-E--EEVYLTAFILVALLESKTICND--YVNSLDSSIKKATNYLLKKYEKLQRPYTTALTAYAL 1179 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccchhccCCccC--C-C--CcccchHHHHHHHHhccccccc--ccccchHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH
Confidence 21 11233210 0 1 2577899999999865432110 0112346899999999864221 11111 1110
Q ss_pred ----ccccchhcccCcccccCCcccc---cCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCc
Q 010631 282 ----MRSYPWLEVLNPAETFGDIVID---YPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWY 354 (505)
Q Consensus 282 ----~~~~~~l~~~~~~e~f~~~~~d---~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~ 354 (505)
......++++...+ ...|... ...++.||.+|.++...++. ......++||.++|+..|||.
T Consensus 1180 ~l~~~~~~~~l~~l~~~~-~~~W~~~~~~~~~VE~TaYaLLa~l~~~~~----------~~a~~iv~WL~~qr~~~Ggf~ 1248 (1642)
T 3prx_B 1180 AAADQLNDDRVLMAASTG-RDHWEEYNAHTHNIEGTSYALLALLKMKKF----------DQTGPIVRWLTDQNFYGETYG 1248 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcCCchHHHHHHHHhcC-CCCCCCCCCchHHHHHHHHHHHHHhccCch----------hhHHHHHHHHHHhccCCCccc
Confidence 01112222221000 0001111 12588999999999876432 246788999999999999997
Q ss_pred ccCCCCccchHHHHHHHHHHcC
Q 010631 355 GSWGVCFTYGTWFGVKGLVAAG 376 (505)
Q Consensus 355 g~wg~~~~y~T~~al~aL~~~G 376 (505)
. +-.|..||+||+...
T Consensus 1249 S------TQdTvvaLqALa~Y~ 1264 (1642)
T 3prx_B 1249 Q------TQATVMAFQALAEYE 1264 (1642)
T ss_dssp ----------------------
T ss_pred C------cHHHHHHHHHHHHHH
Confidence 4 677999999998754
No 43
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.83 E-value=0.00054 Score=71.47 Aligned_cols=294 Identities=14% Similarity=0.162 Sum_probs=165.8
Q ss_pred hHHHHHHHHHHhcCC---CcchHHHHHHHHHHHHhc------ccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhH
Q 010631 163 WDTAFAVQAIISTNL---VEEYGATLKKAHKYIKDS------QVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTS 233 (505)
Q Consensus 163 wDTa~a~~AL~~ag~---~~~~~~~l~~A~~~L~~~------Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta 233 (505)
|+-++.+.+|.++.. .+++.+.+++.++||.+. +..++ |.....+++ + + ..+ ..||.+
T Consensus 82 y~~Gv~l~gl~~ay~~Tgd~kY~~ya~~~~dfi~~~~p~~~~~~~~~--G~l~~~~r~----~--~---~~~--~LDD~g 148 (445)
T 3k11_A 82 YEWGVTYSALIAAAETTGDKRYTDYVQNRFRFLAEVAPHFKRVYEEK--GKTDSQLLQ----I--L---TPH--ALDDAG 148 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHH----H--H---SCC--SGGGTH
T ss_pred cCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhccchhhhhhhcc--CCeeccccc----c--c---CCC--cchhHH
Confidence 888999999988642 234677888889888753 22211 332222221 1 1 122 378888
Q ss_pred HHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcc--cCCcceeeeecccccchhcccCcccccCCcccccCCCcchH
Q 010631 234 EGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQ--NADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTS 311 (505)
Q Consensus 234 ~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Q--n~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta 311 (505)
..+.+|+.+.+.. +.+...+.+.+..+||...+ .++|||--.......- .+|+-.
T Consensus 149 ~~~~~Li~lY~~T----~d~~yl~~a~~~ad~L~~~~pRt~~Ggf~h~~~~~~q~-------------------WiD~ly 205 (445)
T 3k11_A 149 AVCTAMIKLRLKD----ESLPVDGLIQNYFDFIINKEYRLADGTFARNRPQRNTL-------------------WLDDMF 205 (445)
T ss_dssp HHHHHHHHHHHHC----TTCCCHHHHHHHHHHHHHTSCBCTTCCBCBCSSSTTEE-------------------ETHHHH
T ss_pred HHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHcCCCCCCCceeecCCCCCce-------------------Eecchh
Confidence 7777777654322 33446788899999999988 5689985211100111 134444
Q ss_pred HHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhcc-ccCCCcccC--------CCCccchHHHHHHHHHHcCC--C--
Q 010631 312 ASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQE-LDGSWYGSW--------GVCFTYGTWFGVKGLVAAGM--N-- 378 (505)
Q Consensus 312 ~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~-~DG~W~g~w--------g~~~~y~T~~al~aL~~~G~--~-- 378 (505)
.++..|+.++....+....-++.+++....+....++ .+|-|+-.| +....-|-+|++.||..+=. +
T Consensus 206 M~~pfla~~~~~tgd~~~~y~d~A~~q~~~~~~~l~D~~tGL~~Hg~~~~~~~~~~~~WaRGnGW~~~gl~~~l~~lp~~ 285 (445)
T 3k11_A 206 MGIPAVAQMSRYDKEAKNKYLAEAVKQFLQFADRMFIPEKGLYRHGWVESSTDHPAFCWARANGWALLTACELLDVLPED 285 (445)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHEETTTTEECSEEETTCSSCCCCCBHHHHHHHHHHHHHHHHHSCTT
T ss_pred hHHHHHHHHHHHHCCcchHHHHHHHHHHHHHHHhcccCCCCCEeeeecCCCCCCCcceecccchHHHHHHHHHHHhcccc
Confidence 6777777777653221000233344444444444453 457665322 12345578888888876421 1
Q ss_pred CCC----cHHHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHH---HHcCCCCC--CcHHHHH
Q 010631 379 YSN----SSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLAL---IDAGQAET--DPTPLHR 449 (505)
Q Consensus 379 ~~~----~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL---~~ag~~~~--d~~~i~r 449 (505)
+.. -+.+++.++.|++.|.+||-|.... ..+ ..| -..+.||....|| ...|..+. -..+++|
T Consensus 286 ~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vl-d~~-~~y-------~EsSaTAmfaygllkgvr~G~Ld~~~Y~~~A~k 356 (445)
T 3k11_A 286 YPQRPKVMDYFRAHVRGVTALQSGEGFWHQLL-DCN-DSY-------LETSATAIYVYCLAHAINKGWIDAIAYGPVAQL 356 (445)
T ss_dssp CTTHHHHHHHHHHHHHHHHTTCCTTSCEESBT-TCT-TSC-------EEHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCCCchhhcc-CCC-CCC-------CCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 111 1567788999999999999996421 111 112 2345565555555 44455421 0136889
Q ss_pred HHHHHHhcCcCCCCCCCCcc-cce-eccccccccCCchh-----hHHHHHHHHHHHHhh
Q 010631 450 AARYLINSQMENGDYPQEEI-MGV-FNRNCMISYSAYRN-----IFPIWALGEYRCRVL 501 (505)
Q Consensus 450 gv~~L~~~Q~~~G~w~~~~~-~g~-f~~~~~~~y~~y~~-----~fpl~AL~~y~~~~~ 501 (505)
+++.|+++-++||.-..... +|. ....+|+.-|.-.+ -=-|+|..++.++.-
T Consensus 357 a~~~L~~~i~~dG~l~~v~~gtg~g~d~~~Y~~~p~~~~d~~G~G~fllA~~E~~~l~~ 415 (445)
T 3k11_A 357 GWHAVAGKINEEGQVEGTCVGTGMAFDPAFYYYRPVNVYAAHGYGPVLWAGAEMIRLLN 415 (445)
T ss_dssp HHHHHHTTBCTTSCBCSCBCCCCCCSSHHHHHTCCBCTTCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCEeceeeccCCCCCchhhccCcccCCCCccHHHHHHHHHHHHHHhc
Confidence 99999999889996543322 222 23355665553222 124677777666543
No 44
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=97.79 E-value=0.00018 Score=79.05 Aligned_cols=90 Identities=14% Similarity=0.240 Sum_probs=57.7
Q ss_pred HHHHHHHHHhccc-cCCCcccCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCC-CCCcCccccccccc
Q 010631 337 KRAVKFIEKIQEL-DGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSG-GWGESYLSCQKKVY 414 (505)
Q Consensus 337 ~rav~~L~~~Q~~-DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DG-gWge~~~s~~~~~y 414 (505)
.++++||.+..+. +|+-+..+.+. .+...+.+-.|...|+.+...+.|+.+++.+.+....+| +|+..
T Consensus 220 ~~~l~YL~~~v~k~~g~VP~~yP~d-~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~--------- 289 (727)
T 3pya_A 220 SNCLEYLRNAVKRFNGGVPNVFPVD-LFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARC--------- 289 (727)
T ss_dssp HHHHHHHHHHHHHTTTCCCSSCCCH-HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSS---------
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCc-HHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcCcccccC---------
Confidence 6789999987665 44444333322 355778899999999997778999999999987544443 34321
Q ss_pred ccCCCCCCchhHHHHHHHHHHHcCCC
Q 010631 415 SNLEGDRSHVVNTAWAMLALIDAGQA 440 (505)
Q Consensus 415 ~~~~~~~s~~~~Ta~ALlaL~~ag~~ 440 (505)
....+...||.+...|...|..
T Consensus 290 ----~~~~DL~~tAL~FRLLRqhGy~ 311 (727)
T 3pya_A 290 ----SHVQDIDDTAMAFRLLRQHGYQ 311 (727)
T ss_dssp ----CSCCCHHHHHHHHHHHHHTTCC
T ss_pred ----CCCCCHHHHHHHHHHHHhCCCC
Confidence 0123455666666666555543
No 45
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=97.54 E-value=0.0045 Score=63.43 Aligned_cols=221 Identities=14% Similarity=0.164 Sum_probs=126.0
Q ss_pred CCccchHHHHHHHHHHHhcc--cCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCc
Q 010631 251 GEPIETKRLYDSVNVIFSLQ--NADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHW 328 (505)
Q Consensus 251 g~~~~~~~i~~Av~~Ll~~Q--n~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~ 328 (505)
|++...+...+..++|...+ .++|||.....+. . ....+ ..|....++..|..+++...+
T Consensus 127 gd~~Yl~~a~~~ad~L~~~~~r~~~Ggf~~~~~~~-------~-----~~~~~----WiDgl~M~~p~La~~~~~tgd-- 188 (382)
T 3pmm_A 127 GRMAYLPWLESWAEWAMHEMPRTEQGGMQHMTLAE-------E-----NHQQM----WDDTLMMTVLPLAKIGKLLNR-- 188 (382)
T ss_dssp CCGGGHHHHHHHHHHHHHTSCBCGGGCBCCCCSSC-------C-----CTTEE----ETTHHHHTHHHHHHHHHHTTC--
T ss_pred CCHHHHHHHHHHHHHHHhhCCCCcCCCeeeecCCC-------C-----CCCcE----EecchhhhHHHHHHHHHHHCC--
Confidence 34556678888889997655 4589985221100 0 00001 123334555666666655322
Q ss_pred hhhhHHHHHHHHHHHHHhcc-ccCCCcccC---------CCCccchHHHHHHHHHHcC----CCCCCc-------HHHHH
Q 010631 329 QEDVDHCIKRAVKFIEKIQE-LDGSWYGSW---------GVCFTYGTWFGVKGLVAAG----MNYSNS-------SSIRK 387 (505)
Q Consensus 329 ~~~i~~~i~rav~~L~~~Q~-~DG~W~g~w---------g~~~~y~T~~al~aL~~~G----~~~~~~-------~~i~r 387 (505)
.+-++.+++....+....++ ++|.|+-.| ..+..-|-+|++.||..+= .+ ..+ +.+++
T Consensus 189 ~~y~d~A~~q~~~~~~~l~D~~tGl~~h~~~~~~~~~~~~~~WaRG~gW~~~gl~~~l~~l~~p-~~~~~~~~~~~~~~~ 267 (382)
T 3pmm_A 189 PQYVEEATYQFLLHVQNLMDRETGLWFHGWNYEGRHNFARARWARGNSWLTMVIPDFLELVDLP-EGNAVRRYLITVLDA 267 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHBCTTTSCBCSEEETTTTBCTTCCCBHHHHHHHHHHHHHHHHHHCCC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCCCCCeeeeccCCCCCCCCcceecccccHHHHHHHHHHHhhcCC-cchhhHHHHHHHHHH
Confidence 12233455555555566664 568875433 2234456888888887542 22 222 45667
Q ss_pred HHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHH---cCCCCC-CcHHHHHHHHHHHhcCcCCCC
Q 010631 388 ACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALID---AGQAET-DPTPLHRAARYLINSQMENGD 463 (505)
Q Consensus 388 a~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~---ag~~~~-d~~~i~rgv~~L~~~Q~~~G~ 463 (505)
.++.|++.|.+||-|.... ..++ .| ...+.||...-||+. .|..+. -..+++|+++-|+++-.+||.
T Consensus 268 ~a~~~~~~q~~~G~W~~~~-d~~~-~y-------~EsSatA~~ay~ll~~~~~g~l~~~Y~~~a~ka~~~l~~~i~~dG~ 338 (382)
T 3pmm_A 268 QIAALAECQDDSGLWHTLL-DDPH-SY-------LEASATAGFAYGILKAVRKRYVGQHYAGVAEKAIRGIVQNISPQGE 338 (382)
T ss_dssp HHHHHHHHCCTTSCEESBT-TCTT-SC-------EEHHHHHHHHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHTBCTTSC
T ss_pred HHHHHHHcCCCCCChhhcc-CCCC-CC-------ccccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCCCCCC
Confidence 8899999999999997422 1111 11 234566655555544 344321 123689999999999999997
Q ss_pred CCCCcccce--e-cccccccc----CCchhhHHHHHHHHHHHHh
Q 010631 464 YPQEEIMGV--F-NRNCMISY----SAYRNIFPIWALGEYRCRV 500 (505)
Q Consensus 464 w~~~~~~g~--f-~~~~~~~y----~~y~~~fpl~AL~~y~~~~ 500 (505)
-...+. |+ . ...+|++- ..|-+-.-|+|+.++.+.+
T Consensus 339 l~~v~~-gt~~g~~~~~Y~~~p~~~~~~G~~~~lla~~e~~~~~ 381 (382)
T 3pmm_A 339 LLQTSF-GTGMGSDLDFYRQIPLTSMPYGQAMAILCLTEYLRKY 381 (382)
T ss_dssp BCSCBC-CCCCCSSHHHHHTCCBCCCHHHHHHHHHHHHHHHGGG
T ss_pred EeCeec-CCCCCCChhhhhcccCCCCCccHHHHHHHHHHHHHhh
Confidence 654432 33 1 22334333 2466778899999887643
No 46
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=97.47 E-value=0.0014 Score=72.92 Aligned_cols=90 Identities=16% Similarity=0.285 Sum_probs=60.7
Q ss_pred HHHHHHHHHhccc-cCCCcccCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCC-CCCcCccccccccc
Q 010631 337 KRAVKFIEKIQEL-DGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSG-GWGESYLSCQKKVY 414 (505)
Q Consensus 337 ~rav~~L~~~Q~~-DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DG-gWge~~~s~~~~~y 414 (505)
.+|++||.+.++. +|+-+..+... .+...+.+-.|...|+.+...+.|+.+++.+.+.....| ||+..
T Consensus 245 ~~~~~YL~~~~~~~~g~VP~~yP~d-~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~--------- 314 (785)
T 3s9v_A 245 KKCLDFLNFVLKKFGNHVPCHYPLD-LFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARE--------- 314 (785)
T ss_dssp HHHHHHHHHHHHHHSSCCCSSCCCH-HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTT---------
T ss_pred hhHHHHHHHHHHhcCCCCCCcCCCc-HHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccc---------
Confidence 6788999887654 55555444332 345678899999999987778899999999876544433 44311
Q ss_pred ccCCCCCCchhHHHHHHHHHHHcCCC
Q 010631 415 SNLEGDRSHVVNTAWAMLALIDAGQA 440 (505)
Q Consensus 415 ~~~~~~~s~~~~Ta~ALlaL~~ag~~ 440 (505)
+...+...||.++..|...|..
T Consensus 315 ----~~~~Dl~~tAl~FRlLR~~Gy~ 336 (785)
T 3s9v_A 315 ----NPVPDIDDTAMGLRILRLHGYN 336 (785)
T ss_dssp ----CSSCCHHHHHHHHHHHHHTTCC
T ss_pred ----CCCCCHHHHHHHHHHHHhcCCC
Confidence 1124567777777777776654
No 47
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=97.33 E-value=0.0046 Score=69.09 Aligned_cols=90 Identities=16% Similarity=0.204 Sum_probs=59.6
Q ss_pred HHHHHHHHHhccc-cCCCcccCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCC-CCCcCccccccccc
Q 010631 337 KRAVKFIEKIQEL-DGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSG-GWGESYLSCQKKVY 414 (505)
Q Consensus 337 ~rav~~L~~~Q~~-DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DG-gWge~~~s~~~~~y 414 (505)
.+|.+||.+.++. +|+-+..+... .+...+.+-.|...|+.+...+.|+.+++.+.+.-.+.| ||+..
T Consensus 273 ~~~~~YL~~~~~~~~g~VP~~yP~d-~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~--------- 342 (817)
T 3sdr_A 273 AKCLEFLNSVMIKFGNFVPCLYPVD-LLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRL--------- 342 (817)
T ss_dssp HHHHHHHHHHHHHHSSCCCSSSCCH-HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSSTT---------
T ss_pred hhHHHHHHHHHHhcCCCCCccCCCc-HHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccC---------
Confidence 5789999886655 56555444432 355778899999999987778999999999887544433 34311
Q ss_pred ccCCCCCCchhHHHHHHHHHHHcCCC
Q 010631 415 SNLEGDRSHVVNTAWAMLALIDAGQA 440 (505)
Q Consensus 415 ~~~~~~~s~~~~Ta~ALlaL~~ag~~ 440 (505)
+...+...||.+...|...|..
T Consensus 343 ----~~~~Dl~~tAl~FRlLR~~Gy~ 364 (817)
T 3sdr_A 343 ----NPIADLETTALGFRLLRLHRYN 364 (817)
T ss_dssp ----CSSCCHHHHHHHHHHHHHTTCC
T ss_pred ----CCCCCHHHHHHHHHHHHHcCCC
Confidence 1123556666666666666654
No 48
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=97.28 E-value=0.0058 Score=67.86 Aligned_cols=240 Identities=16% Similarity=0.175 Sum_probs=134.3
Q ss_pred cCCCCHHHHHHHhhhhhceeeeCCCceeecCCCCChh----HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCC
Q 010631 127 EDPNSEAFKLHIPRINDYLWIAEDGMKVQGYNGSQLW----DTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCP 202 (505)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~q~~~~s~vw----DTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~ 202 (505)
.++..|.|.++++||.+- +.+||.|-.+. +.... .|.-++.||..-+.. .+.+.|++.||.+.= .-
T Consensus 48 ~~~~~p~Fp~~~~wil~n--Q~~DGsWg~~~-~~~~~d~ll~TlAcvlAL~~w~~~---~~~i~~Gl~fl~~nl-~~--- 117 (764)
T 3p5p_A 48 DGSEKPRFPQALNWVFNN--QLQDGSWGIES-HFSLCDRLLNTTNSVIALSVWKTG---HSQVQQGAEFIAENL-RL--- 117 (764)
T ss_dssp TSCEEESCHHHHHHHHHC--CCTTSCCSCTT-SCCHHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHH-TT---
T ss_pred CCCCCCCChHHHHHHHHc--cCCCCCCCCCC-CcchHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHH-Hh---
Confidence 446667899999999776 57899884332 22233 477788999987654 368999999998764 21
Q ss_pred CCccccccCCCCCCCCCccc-----------CCCCCCchhhHH-HHHHhHH--hhhccccccCCc----cchHHHHHHHH
Q 010631 203 GNLDFWYRHISKGAWPFSTA-----------DHGWPISDCTSE-GLKASLL--LSKLSSAIVGEP----IETKRLYDSVN 264 (505)
Q Consensus 203 Gd~~~~~~~~~~GgW~f~~~-----------~~~~pd~d~Ta~-al~aL~~--~~~~~~~~~g~~----~~~~~i~~Av~ 264 (505)
|.. ....+=| |+-. +-..| .|.+.. .+.++.. +.+.+.+..+.+ -.-|.+...++
T Consensus 118 --~~~--~~~~~vg--feiifP~ll~~a~~~gl~~p-~~~~~~~~l~~~r~~kL~~~~~~~~~~p~~llhslE~~~~~~d 190 (764)
T 3p5p_A 118 --LNE--EDELSPD--FQIIFPALLQKAKALGINLP-YDLPFIKYLSTTREARLTDVSAAADNIPANMLNALEGLEEVID 190 (764)
T ss_dssp --CCT--TSCCCTT--HHHHHHHHHHHHHHTTCCCC-TTSHHHHHHHHHHHHHHHHHHTSTTSSCGGGGGGGGGSGGGCC
T ss_pred --hcC--CCCCCce--eeeeHHHHHHHHHHcCCCCC-CCchhHHHHHHhHHHHHhcCchhhcCCCchHHHHHHhcccccc
Confidence 100 0000011 1100 00001 111111 1111110 111110001111 01233444455
Q ss_pred H--HHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHH
Q 010631 265 V--IFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKF 342 (505)
Q Consensus 265 ~--Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~ 342 (505)
| +...|..||++. .++..||+++.. .+ -.+|.+|
T Consensus 191 ~~~~~~~~~~~GS~~---------------------------~SPsaTAa~l~~---~~--------------d~~~~~Y 226 (764)
T 3p5p_A 191 WNKIMRFQSKDGSFL---------------------------SSPASTACVLMN---TG--------------DEKCFTF 226 (764)
T ss_dssp TTGGGGGBCTTSCBT---------------------------TBHHHHHHHHHH---HC--------------CHHHHHH
T ss_pred HHHHHhccCCCCCcc---------------------------cChHHHHHHHHh---CC--------------ChhHHHH
Confidence 5 566666666662 124567766532 11 1578999
Q ss_pred HHHhccc-cCCCcccCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCC-CCCcCcccccccccccCCCC
Q 010631 343 IEKIQEL-DGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSG-GWGESYLSCQKKVYSNLEGD 420 (505)
Q Consensus 343 L~~~Q~~-DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DG-gWge~~~s~~~~~y~~~~~~ 420 (505)
|.+.++. +|+-+..+... .+...+.+-.|...|+.+...+.|+.+++.+.+...+.| ||+.. +.
T Consensus 227 L~~~~~~~~g~VP~~yP~d-~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~-------------~~ 292 (764)
T 3p5p_A 227 LNNLLDKFGGCVPCMYSID-LLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRD-------------SL 292 (764)
T ss_dssp HHHHHHHHTSCCCSSCCCH-HHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCSSTT-------------CS
T ss_pred HHHHHHhcCCCCCCcCCCc-HHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccC-------------CC
Confidence 9886655 56555544432 355778899999999987778999999999987544433 34311 11
Q ss_pred CCchhHHHHHHHHHHHcCCCC
Q 010631 421 RSHVVNTAWAMLALIDAGQAE 441 (505)
Q Consensus 421 ~s~~~~Ta~ALlaL~~ag~~~ 441 (505)
..+...||.++..|...|...
T Consensus 293 ~~Dl~~tAl~FRlLR~~Gy~V 313 (764)
T 3p5p_A 293 VPDLNTTALGLRTLRMHGYNV 313 (764)
T ss_dssp SCCHHHHHHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHhcCCCc
Confidence 356788888888888888753
No 49
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=97.27 E-value=0.00049 Score=76.95 Aligned_cols=105 Identities=14% Similarity=0.126 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhcc---ccCCCcccCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCccccccc
Q 010631 336 IKRAVKFIEKIQE---LDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKK 412 (505)
Q Consensus 336 i~rav~~L~~~Q~---~DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~ 412 (505)
+++-++-+++... .||.|+. -.+-.|.|+|+ ||...- .....+.....++||++.|.+||+||..... .
T Consensus 56 ~~~Lie~VK~~l~~~~~~g~~g~--~S~S~YDTAWV--Amvp~~-~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~---~ 127 (817)
T 3sdr_A 56 AEVLVSEIKAMLNPAITGDGESM--ITPSAYDTAWV--ARVPAI-DGSARPQFPQTVDWILKNQLKDGSWGIQSHF---L 127 (817)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCCC--CCCCHHHHHHH--HTCBCT-TSCSSBSSHHHHHHHHHCCCTTSCCSCTTCC---C
T ss_pred HHHHHHHHHHHhccccCCCCCcc--cccCHHHhhHH--heeecC-CCCCCCCchHHHHHHHHccCCCCCCCCCCCc---c
Confidence 3444444444433 4562221 14678999995 444221 1123456678999999999999999964110 0
Q ss_pred ccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcC
Q 010631 413 VYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQ 458 (505)
Q Consensus 413 ~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q 458 (505)
..-.+..|.-+++||...+.. +..|+||+.||.++-
T Consensus 128 -------~~d~ll~TlAcvlAL~~w~~~---~~~i~~Gl~fl~~nl 163 (817)
T 3sdr_A 128 -------LSDRLLATLSCVLVLLKWNVG---DLQVEQGIEFIKSNL 163 (817)
T ss_dssp -------HHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHH
Confidence 011367899999999998754 457999999999863
No 50
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=97.18 E-value=0.00061 Score=75.84 Aligned_cols=101 Identities=17% Similarity=0.249 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhcc--ccCCCcccCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccccccc
Q 010631 336 IKRAVKFIEKIQE--LDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKV 413 (505)
Q Consensus 336 i~rav~~L~~~Q~--~DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~ 413 (505)
++..++-+++... .+|.- .+..|.|+|+ ||...- .....+.....++||++.|.+||+||..... .
T Consensus 33 ~~~~~~~i~~~~~~~~~g~~-----S~S~YDTAWV--amvp~~-~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~---~- 100 (785)
T 3s9v_A 33 IETLISEIKNMFRCMGYGET-----NPSAYDTAWV--ARIPAV-DGSDNPHFPETVEWILQNQLKDGSWGEGFYF---L- 100 (785)
T ss_dssp HHHHHHHHHHHHHHCSSCCC-----CCCHHHHHHH--TTSBCT-TSCSSBSSHHHHHHHHHCCCTTSCCSCSSSC---C-
T ss_pred HHHHHHHHHHHhhcCCCCcc-----cCcHHHhhHH--hccccC-CCCCCCCchHHHHHHHHccCCCCCCCCCCCC---c-
Confidence 4444444444432 34433 4678999995 343211 1123456678999999999999999964110 0
Q ss_pred cccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhc
Q 010631 414 YSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINS 457 (505)
Q Consensus 414 y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~ 457 (505)
..-.+..|.-+++||...+.. +..|+||+.||.++
T Consensus 101 ------~~d~l~~TlAcvlAL~~w~~~---~~~i~~Gl~fl~~n 135 (785)
T 3s9v_A 101 ------AYDRILATLACIITLTLWRTG---ETQVQKGIEFFRTQ 135 (785)
T ss_dssp ------HHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHHHHHcccC---HHHHHHHHHHHHHH
Confidence 011268899999999997754 45799999999886
No 51
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=97.13 E-value=0.014 Score=59.44 Aligned_cols=183 Identities=13% Similarity=0.111 Sum_probs=98.5
Q ss_pred cchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHH-Hhcc-ccCCCcccCC----------------CCccchHHHHH
Q 010631 308 ECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIE-KIQE-LDGSWYGSWG----------------VCFTYGTWFGV 369 (505)
Q Consensus 308 ~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~-~~Q~-~DG~W~g~wg----------------~~~~y~T~~al 369 (505)
|+...++..|..+.+...+ ++..+...+-+++.. ..+. ++|-|+-.|. .....|.+|++
T Consensus 143 D~l~m~~p~L~~l~~~tgd---~~y~d~A~~~~~~~~~~l~D~~tGl~~h~~~~~~~~~w~d~~tg~~~~~WaRg~gW~~ 219 (373)
T 1nc5_A 143 DGLYMGGPFALKYANLKQE---TELFDQVVLQESLMRKHTKDAKTGLFYHAWDEAKKMPWANEETGCSPEFWARSIGWYV 219 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTC---THHHHHHHHHHHHHHHHHBCTTTSCBCSEEETTCCSTTSCTTTCBCSCCBHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHhcCCCCCCEEeecCCccccccccccCCCCCCcccchHhHHH
Confidence 4444556667666554322 122223333333433 3443 4677753221 12344778899
Q ss_pred HHHHHcCCC-CCC-------cHHHHHHHHHHHhccCC-CCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHH---c
Q 010631 370 KGLVAAGMN-YSN-------SSSIRKACEFLLSKQRP-SGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALID---A 437 (505)
Q Consensus 370 ~aL~~~G~~-~~~-------~~~i~ra~~~L~~~Q~~-DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~---a 437 (505)
.||..+-.. +.+ -+..++.++.|++.|.+ ||-|.. ....++ + ++..-..+.||+...+|+. .
T Consensus 220 ~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~~~q~~~dG~W~~-~ld~~~--~---~~~~~EsSatA~~ay~l~~g~~~ 293 (373)
T 1nc5_A 220 MSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQDKETGLWYQ-IVDKGD--R---SDNWLESSGSCLYMYAIAKGINK 293 (373)
T ss_dssp HHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTSCTTTSCCBS-BTTCTT--S---TTCCBCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhcCCCCCceee-ecCCCC--C---CCCCccccHHHHHHHHHHHHHHC
Confidence 999765321 111 13456688999999997 999973 111111 0 1222345667666666655 3
Q ss_pred CCCC-CCcHHHHHHHHHHHhc---CcCCCCC--CCCcccceecc--ccccccC-----CchhhHHHHHHHHHHHHh
Q 010631 438 GQAE-TDPTPLHRAARYLINS---QMENGDY--PQEEIMGVFNR--NCMISYS-----AYRNIFPIWALGEYRCRV 500 (505)
Q Consensus 438 g~~~-~d~~~i~rgv~~L~~~---Q~~~G~w--~~~~~~g~f~~--~~~~~y~-----~y~~~fpl~AL~~y~~~~ 500 (505)
|..+ .-..+++|+++.|+++ ..+||.- ...+..| .+. ..|++.+ .|-.-.-|+|+.++.++.
T Consensus 294 g~l~~~Y~~~a~k~~~~l~~~~~~~~~dG~l~~~~~~~~~-~~~~~~yY~~~~~~~~d~~G~g~~lla~~e~~~~~ 368 (373)
T 1nc5_A 294 GYLDRAYETTLLKAYQGLIQHKTETSEDGAFLVKDICVGT-SAGFYDYYVSRERSTNDLHGAGAFILAMTELEPLF 368 (373)
T ss_dssp TSSCGGGHHHHHHHHHHHHHHHEEECTTSCEEECCEECSC-CSCCHHHHHTSCEESSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHhceeECCCCCEEecceEEeC-cCCCchhhhcccCCCCCcchHHHHHHHHHHHHHHH
Confidence 5432 1123689999999985 4778843 3322222 222 2244433 334567899999987764
No 52
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=97.11 E-value=0.00065 Score=75.42 Aligned_cols=104 Identities=17% Similarity=0.210 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhcc--ccCCCcccCCCCccchHHHHHHHHHHcC-CCCCCcHHHHHHHHHHHhccCCCCCCCcCcccccc
Q 010631 335 CIKRAVKFIEKIQE--LDGSWYGSWGVCFTYGTWFGVKGLVAAG-MNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQK 411 (505)
Q Consensus 335 ~i~rav~~L~~~Q~--~DG~W~g~wg~~~~y~T~~al~aL~~~G-~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~ 411 (505)
.++..++-+++... .+|.- .+..|.|+|+ ||...- ......+.....++||++.|.+||+||.....
T Consensus 9 ~~~~~~~~i~~~~~~~~~g~~-----S~S~YDTAWV--amvp~~~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~--- 78 (764)
T 3p5p_A 9 RADELVVKIKDMFNALGDGDI-----SPSAYDTAWV--ARLATISSDGSEKPRFPQALNWVFNNQLQDGSWGIESHF--- 78 (764)
T ss_dssp HHHHHHHHHHHHHHTCSSCCC-----CCCHHHHHHH--HHCEEECTTSCEEESCHHHHHHHHHCCCTTSCCSCTTSC---
T ss_pred HHHHHHHHHHHHHhcCCCCcc-----cCcHHHHHHH--HhCccccCCCCCCCCChHHHHHHHHccCCCCCCCCCCCc---
Confidence 34455555554443 24433 4678999995 454221 01122345678999999999999999964110
Q ss_pred cccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcC
Q 010631 412 KVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQ 458 (505)
Q Consensus 412 ~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q 458 (505)
.. .-.+.+|.-+++||...+.. +..|+||+.||.++-
T Consensus 79 ~~-------~d~ll~TlAcvlAL~~w~~~---~~~i~~Gl~fl~~nl 115 (764)
T 3p5p_A 79 SL-------CDRLLNTTNSVIALSVWKTG---HSQVQQGAEFIAENL 115 (764)
T ss_dssp CH-------HHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHH
T ss_pred ch-------HHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHH
Confidence 00 11368899999999997754 457999999998864
No 53
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=96.95 E-value=0.0018 Score=71.31 Aligned_cols=82 Identities=21% Similarity=0.410 Sum_probs=58.3
Q ss_pred CCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcC
Q 010631 359 VCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAG 438 (505)
Q Consensus 359 ~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag 438 (505)
.+.+|.|+|+ ||... . ...+.-...++||++.|.+||+||.... +. ..-.+.+|.-+++||...+
T Consensus 31 S~S~YDTAWV--Amvp~--~-~~~p~Fp~~~~wil~nQ~~DGsWG~~~~------~~----~~D~ll~TLAcvlAL~~w~ 95 (727)
T 3pya_A 31 TISAYDTAWV--ALIDA--G-DKTPAFPSAVKWIAENQLSDGSWGDAYL------FS----YHDRLINTLACVVALRSWN 95 (727)
T ss_dssp CCCHHHHHHH--HTCBC--S-SSSBSCHHHHHHHHHTCCTTSCCSCSSS------CC----HHHHHHHHHHHHHHHHHTT
T ss_pred cCcHHHhHHH--hhccC--C-CCCCCCHHHHHHHHhcCCCCCCCCCCCC------cc----hhhHHHHHHHHHHHHHHcc
Confidence 4678999995 44421 1 1233456899999999999999996310 00 0113688999999999976
Q ss_pred CCCCCcHHHHHHHHHHHhcC
Q 010631 439 QAETDPTPLHRAARYLINSQ 458 (505)
Q Consensus 439 ~~~~d~~~i~rgv~~L~~~Q 458 (505)
.. +..|+||+.||.++-
T Consensus 96 ~~---~~~i~rGl~fl~~nl 112 (727)
T 3pya_A 96 LF---PHQCNKGITFFRENI 112 (727)
T ss_dssp CC---HHHHHHHHHHHHHHG
T ss_pred CC---HHHHHHHHHHHHHHH
Confidence 53 457999999998853
No 54
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=96.95 E-value=0.046 Score=55.90 Aligned_cols=78 Identities=12% Similarity=0.051 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHH--HHHHHhhhhCCCCchhhhH
Q 010631 256 TKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASI--QALTSFKKLYPGHWQEDVD 333 (505)
Q Consensus 256 ~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl--~aL~~~~~~~~~~~~~~i~ 333 (505)
.+..++.++.+++.|.+||.|-..- + +- .++.|.+|.++ .+|....+. ..-.+++.
T Consensus 262 ~~~~~~~a~~~~~~q~~~G~W~~~~-d----------------~~---~~y~EsSatA~~ay~ll~~~~~--g~l~~~Y~ 319 (382)
T 3pmm_A 262 ITVLDAQIAALAECQDDSGLWHTLL-D----------------DP---HSYLEASATAGFAYGILKAVRK--RYVGQHYA 319 (382)
T ss_dssp HHHHHHHHHHHHHHCCTTSCEESBT-T----------------CT---TSCEEHHHHHHHHHHHHHHHHT--TSSCGGGH
T ss_pred HHHHHHHHHHHHHcCCCCCChhhcc-C----------------CC---CCCccccHHHHHHHHHHHHHHc--CCCcHHHH
Confidence 4667888999999999999995211 0 00 02234444444 444443321 12224577
Q ss_pred HHHHHHHHHHHHhccccCCCcc
Q 010631 334 HCIKRAVKFIEKIQELDGSWYG 355 (505)
Q Consensus 334 ~~i~rav~~L~~~Q~~DG~W~g 355 (505)
++++|+++-|.++-++||...+
T Consensus 320 ~~a~ka~~~l~~~i~~dG~l~~ 341 (382)
T 3pmm_A 320 GVAEKAIRGIVQNISPQGELLQ 341 (382)
T ss_dssp HHHHHHHHHHHHTBCTTSCBCS
T ss_pred HHHHHHHHHHHhhCCCCCCEeC
Confidence 8999999999999999997654
No 55
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=96.15 E-value=0.12 Score=52.41 Aligned_cols=149 Identities=12% Similarity=0.079 Sum_probs=79.4
Q ss_pred CChhHHHHHHHHHHhcCC----CcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCC-----CCCch
Q 010631 160 SQLWDTAFAVQAIISTNL----VEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHG-----WPISD 230 (505)
Q Consensus 160 s~vwDTa~a~~AL~~ag~----~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~-----~pd~d 230 (505)
-.+||.|..+.+++++.. .+++.+..+++++||++.-... . |||-++...++ -...+
T Consensus 50 K~l~~nar~i~~~a~a~~~~~~~~~~~~~A~~~~~~l~~~~~~~--~------------Gg~~~~~d~dg~~~~~~~~~~ 115 (388)
T 2gz6_A 50 KFIWLQNRQVWTFSMLCNQLEKRENWLKIARNGAKFLAQHGRDD--E------------GNWYFALTRGGEPLVQPYNIF 115 (388)
T ss_dssp EEHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSBCT--T------------SCBCSEECTTSCBCCCCCCHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC--C------------CCEEEEEcCCCCcccCCcchH
Confidence 457899999999988532 2356788899999999984332 1 44433321111 12467
Q ss_pred hhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhccc-CCcceeeeecccccchhcccCcccccCCcccccCCCcc
Q 010631 231 CTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQN-ADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVEC 309 (505)
Q Consensus 231 ~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn-~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~ 309 (505)
+-|+++.||..+.+. .|.+...+...+..+++++... ++|.|.....+ .. .....+.
T Consensus 116 ~~af~i~al~~~y~~----tg~~~~l~~A~~~~~~i~~~~~d~~g~~~~~~~~--------------~~----~~~~~~~ 173 (388)
T 2gz6_A 116 SDCFAAMAFSQYALA----SGEEWAKDVAMQAYNNVLRRKDNPKGKYTKTYPG--------------TR----PMKALAV 173 (388)
T ss_dssp HHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHTC----------------------------CC----CCEETHH
T ss_pred HHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcCCCcccCcccCC--------------CC----CCCCCCH
Confidence 788999888765442 1233334455666777777653 33443221110 00 0011234
Q ss_pred hHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhc
Q 010631 310 TSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQ 347 (505)
Q Consensus 310 Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q 347 (505)
.+..+.+|..+.+... .++..+...+.++.+.+..
T Consensus 174 ~~~~~~all~l~~~t~---d~~~~~~A~~~~~~~~~~~ 208 (388)
T 2gz6_A 174 PMILANLTLEMEWLLP---QETLENVLAATVQEVMGDF 208 (388)
T ss_dssp HHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHH
Confidence 5566667776655432 2344556677777777653
No 56
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=95.52 E-value=0.87 Score=46.47 Aligned_cols=149 Identities=12% Similarity=0.067 Sum_probs=84.9
Q ss_pred CChhHHHHHHHHHHhcCC---CcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCC-----Cchh
Q 010631 160 SQLWDTAFAVQAIISTNL---VEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWP-----ISDC 231 (505)
Q Consensus 160 s~vwDTa~a~~AL~~ag~---~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~p-----d~d~ 231 (505)
-.+|+++..+.+++.+.. .+++.+..+++++||.+.-..+ . .|||.++.. ++-| ..++
T Consensus 49 k~l~~n~r~i~~~a~a~~~~g~~~~l~~A~~~~~fl~~~~~d~--~-----------~Gg~~~~~~-dG~~~~~~~~lyd 114 (402)
T 3gt5_A 49 RHLVSSTRFVFNYAMAYLQFGTAEYLDAVHHGLSYVRDVHRNP--A-----------TGGYAWTLC-DDRVEDDTNHCYG 114 (402)
T ss_dssp EEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTBCT--T-----------TSCBCSEEE-TTEEEECCEEHHH
T ss_pred hhHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHhCccC--C-----------CCcEEEEee-CCCCCcCCcchHH
Confidence 457999999999987631 2346778899999998753221 0 167776652 3322 4578
Q ss_pred hHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhc-ccCC-ccee-eeecccccchhcccCcccccCCcccccCCCc
Q 010631 232 TSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSL-QNAD-GGFA-TYELMRSYPWLEVLNPAETFGDIVIDYPCVE 308 (505)
Q Consensus 232 Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~-Qn~d-Ggw~-~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~ 308 (505)
-|+++.|+..... .|.+...+...+..++|.+. ..++ |++. .+..+ |- + .++....
T Consensus 115 ~Af~i~al~~~~~-----tgd~~~l~~A~~l~~~i~~~f~d~~~G~~~~~~~~~----~~--~----------~~~~~~n 173 (402)
T 3gt5_A 115 LAFVMLAYSCGLK-----VGIKQAREWMDETWCLLERHFWDAEYGLYKDEADAQ----WN--F----------TRYRGQN 173 (402)
T ss_dssp HHHHHHHHHHHHH-----TTCTTHHHHHHHHHHHHHHHTEETTTTEECCEECTT----CC--B----------CSCEEHH
T ss_pred HHHHHHHHHHHHH-----hCChhHHHHHHHHHHHHHHHhcCCcCCCchhhhCCC----CC--C----------CCCCCCC
Confidence 8999999886432 23333445566667777664 3444 5553 22211 10 0 0111223
Q ss_pred chHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHh
Q 010631 309 CTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKI 346 (505)
Q Consensus 309 ~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~ 346 (505)
..++++++|..+.+...+ ++..+.+++.++.+...
T Consensus 174 ~~m~l~eall~L~~~tgd---~~~~~~a~~l~~~~~~~ 208 (402)
T 3gt5_A 174 ANMHMCEAMLAAYEASGE---QRYLERALVLADRITRR 208 (402)
T ss_dssp HHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHHHH
Confidence 345566677666554332 33445666677776654
No 57
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=95.51 E-value=0.65 Score=47.00 Aligned_cols=129 Identities=14% Similarity=0.174 Sum_probs=77.6
Q ss_pred chHHHHHHHHHhhhhCCCC--chhhhHHHHHHHHHHHHHhccc-cCCCccc-----CCCC--ccchHHHHHHHHHHc---
Q 010631 309 CTSASIQALTSFKKLYPGH--WQEDVDHCIKRAVKFIEKIQEL-DGSWYGS-----WGVC--FTYGTWFGVKGLVAA--- 375 (505)
Q Consensus 309 ~Ta~vl~aL~~~~~~~~~~--~~~~i~~~i~rav~~L~~~Q~~-DG~W~g~-----wg~~--~~y~T~~al~aL~~~--- 375 (505)
..+-++.+|....+..|.. .++++....++-+++|.+.|.+ ||.|... ...+ .+.+|+....||...
T Consensus 214 g~gW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~~~q~~~dG~W~~~ld~~~~~~~~~EsSatA~~ay~l~~g~~~ 293 (373)
T 1nc5_A 214 SIGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQDKETGLWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINK 293 (373)
T ss_dssp HHHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTSCTTTSCCBSBTTCTTSTTCCBCHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhcCCCCCceeeecCCCCCCCCCccccHHHHHHHHHHHHHHC
Confidence 4566778887766554432 2245667788999999999997 9999731 1122 245677777777653
Q ss_pred CCC-CCCcHHHHHHHHHHHhc---cCCCC--CCCcCccccccc---ccccCCCCCCchhHHHHHHHHHHHc
Q 010631 376 GMN-YSNSSSIRKACEFLLSK---QRPSG--GWGESYLSCQKK---VYSNLEGDRSHVVNTAWAMLALIDA 437 (505)
Q Consensus 376 G~~-~~~~~~i~ra~~~L~~~---Q~~DG--gWge~~~s~~~~---~y~~~~~~~s~~~~Ta~ALlaL~~a 437 (505)
|.. ....+.++|+.+.|.++ .++|| .++..|....+. .|...+-...++...+..|+|+.+.
T Consensus 294 g~l~~~Y~~~a~k~~~~l~~~~~~~~~dG~l~~~~~~~~~~~~~~~yY~~~~~~~~d~~G~g~~lla~~e~ 364 (373)
T 1nc5_A 294 GYLDRAYETTLLKAYQGLIQHKTETSEDGAFLVKDICVGTSAGFYDYYVSRERSTNDLHGAGAFILAMTEL 364 (373)
T ss_dssp TSSCGGGHHHHHHHHHHHHHHHEEECTTSCEEECCEECSCCSCCHHHHHTSCEESSCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHhceeECCCCCEEecceEEeCcCCCchhhhcccCCCCCcchHHHHHHHHHHH
Confidence 432 13567889999999884 57888 344433222111 1221100112466778888887653
No 58
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=95.48 E-value=0.62 Score=48.37 Aligned_cols=216 Identities=12% Similarity=0.074 Sum_probs=119.9
Q ss_pred CCChhHHHHHHHHHHhc---CCCcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHH
Q 010631 159 GSQLWDTAFAVQAIIST---NLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEG 235 (505)
Q Consensus 159 ~s~vwDTa~a~~AL~~a---g~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~a 235 (505)
...+.|.++.+.+|.+. .-.+++.+.+.+..+||...+.+.. . ||+-........--+|+--++
T Consensus 141 ~~~LDD~g~~~~~Li~lY~~T~d~~yl~~a~~~ad~L~~~~pRt~-~------------Ggf~h~~~~~~q~WiD~lyM~ 207 (445)
T 3k11_A 141 PHALDDAGAVCTAMIKLRLKDESLPVDGLIQNYFDFIINKEYRLA-D------------GTFARNRPQRNTLWLDDMFMG 207 (445)
T ss_dssp CCSGGGTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHTSCBCT-T------------CCBCBCSSSTTEEETHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCC-C------------CceeecCCCCCceEecchhhH
Confidence 44688999777777753 3345678999999999999987641 1 444332111111113443355
Q ss_pred HHHhHHhhhccccccCCc---cchHHHHHHHHHHHhcccC-Ccceee-eecccccchhcccCcccccCCcccccCCCcch
Q 010631 236 LKASLLLSKLSSAIVGEP---IETKRLYDSVNVIFSLQNA-DGGFAT-YELMRSYPWLEVLNPAETFGDIVIDYPCVECT 310 (505)
Q Consensus 236 l~aL~~~~~~~~~~~g~~---~~~~~i~~Av~~Ll~~Qn~-dGgw~~-~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~T 310 (505)
+--|..+.... |.+ ..++++.........++++ +|-|-- +...+.. .. ...-.-..
T Consensus 208 ~pfla~~~~~t----gd~~~~y~d~A~~q~~~~~~~l~D~~tGL~~Hg~~~~~~~-----------~~----~~~WaRGn 268 (445)
T 3k11_A 208 IPAVAQMSRYD----KEAKNKYLAEAVKQFLQFADRMFIPEKGLYRHGWVESSTD-----------HP----AFCWARAN 268 (445)
T ss_dssp HHHHHHHHHHC----GGGHHHHHHHHHHHHHHHHHHHEETTTTEECSEEETTCSS-----------CC----CCCBHHHH
T ss_pred HHHHHHHHHHH----CCcchHHHHHHHHHHHHHHHhcccCCCCCEeeeecCCCCC-----------CC----cceecccc
Confidence 55554444321 111 1123333333334444544 455521 1111000 00 00012245
Q ss_pred HHHHHHHHHhhhhCCC-C-chhhhHHHHHHHHHHHHHhccccCCCcccC--CCCc--cchHHHHHHHHHH---cCCCC--
Q 010631 311 SASIQALTSFKKLYPG-H-WQEDVDHCIKRAVKFIEKIQELDGSWYGSW--GVCF--TYGTWFGVKGLVA---AGMNY-- 379 (505)
Q Consensus 311 a~vl~aL~~~~~~~~~-~-~~~~i~~~i~rav~~L~~~Q~~DG~W~g~w--g~~~--~y~T~~al~aL~~---~G~~~-- 379 (505)
+-++.+|...-+..|. + .++++....++.++.|.+.|.+||.|.-.- ..+| +.+|+..+.||.. .|...
T Consensus 269 GW~~~gl~~~l~~lp~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSaTAmfaygllkgvr~G~Ld~~ 348 (445)
T 3k11_A 269 GWALLTACELLDVLPEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQLLDCNDSYLETSATAIYVYCLAHAINKGWIDAI 348 (445)
T ss_dssp HHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHHTSSCHH
T ss_pred hHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHhCCCCCchhhccCCCCCCCCccHHHHHHHHHHHHHHcCCCCHH
Confidence 6677777766554342 2 235667788999999999999999997422 1222 4567776677754 34321
Q ss_pred CCcHHHHHHHHHHHhccCCCCCCCcCc
Q 010631 380 SNSSSIRKACEFLLSKQRPSGGWGESY 406 (505)
Q Consensus 380 ~~~~~i~ra~~~L~~~Q~~DGgWge~~ 406 (505)
...+.++|+.+.|.++.++||--+..|
T Consensus 349 ~Y~~~A~ka~~~L~~~i~~dG~l~~v~ 375 (445)
T 3k11_A 349 AYGPVAQLGWHAVAGKINEEGQVEGTC 375 (445)
T ss_dssp HHHHHHHHHHHHHHTTBCTTSCBCSCB
T ss_pred HHHHHHHHHHHHHHHhCCCCCCEecee
Confidence 123678899999999999998654443
No 59
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=95.43 E-value=0.85 Score=50.10 Aligned_cols=251 Identities=14% Similarity=0.102 Sum_probs=129.9
Q ss_pred hHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHHHhHHh
Q 010631 163 WDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLL 242 (505)
Q Consensus 163 wDTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL~~~ 242 (505)
-|.+++++||...|. .+..++.++||.+.|..+ |++...+. ..|. ++ -+-+-.|.|+..+.++..+
T Consensus 343 RD~~~~~~al~~~G~----~~~a~~~l~~l~~~q~~~---G~~~~~~~--~~G~-p~----w~~~Q~D~~g~~l~~~~~~ 408 (684)
T 1lf6_A 343 RDLYHVANAFIAAGD----VDSANRSLDYLAKVVKDN---GMIPQNTW--ISGK-PY----WTGIQLDEQADPIILSYRL 408 (684)
T ss_dssp HHHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHH---SSCCSCBC--TTSC-BC----CCCCCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCC----HHHHHHHHHHHHhhcCCC---CCccccee--CCCC-cc----cCCccccchHHHHHHHHHH
Confidence 589999999999885 356788999999999865 66532221 1121 11 1114589999998887644
Q ss_pred hhccccccCCccchHH-HHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhh
Q 010631 243 SKLSSAIVGEPIETKR-LYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFK 321 (505)
Q Consensus 243 ~~~~~~~~g~~~~~~~-i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~ 321 (505)
.+ .| .-+. ++++++|+.+.-. .-+.+-++.. ....+...+.+..||..+.
T Consensus 409 ~~-----~g---~~~~~v~~al~~i~~~~~-~~~~g~WE~~--------------------~g~~~~t~~~~~~aL~~~a 459 (684)
T 1lf6_A 409 KR-----YD---LYDSLVKPLADFIIKIGP-KTGQERWEEI--------------------GGYSPATMAAEVAGLTCAA 459 (684)
T ss_dssp TC-----GG---GTTTTHHHHHHHHHHHCS-SBSSCTTSSC--------------------CBBCHHHHHHHHHHHHHHH
T ss_pred HH-----cC---chHHHHHHHHHHHHHhCC-CCCccccccc--------------------CCcCHHHHHHHHHHHHHHH
Confidence 32 12 2455 9999999998531 1111111100 0011233445555555433
Q ss_pred h---hCCCC-chhhhHHHHHHHHHHHHH-hccccC-----CCcccC----CCC------------ccchH----HHHHHH
Q 010631 322 K---LYPGH-WQEDVDHCIKRAVKFIEK-IQELDG-----SWYGSW----GVC------------FTYGT----WFGVKG 371 (505)
Q Consensus 322 ~---~~~~~-~~~~i~~~i~rav~~L~~-~Q~~DG-----~W~g~w----g~~------------~~y~T----~~al~a 371 (505)
+ ...+. ..+......++-.+.|.+ .-.++| +|+.+- +.. ..++. + .+..
T Consensus 460 ~lA~~~g~~~~a~~~~~~a~~i~~~i~~~~w~~~~~~g~~~~f~r~~~d~~~~~~~~~~~~~~~~~~~~~~~lDa-s~l~ 538 (684)
T 1lf6_A 460 YIAEQNKDYESAQKYQEKADNWQKLIDNLTYTENGPLGNGQYYIRIAGLSDPDADFMINIANGGGVYDQKEIVDP-SFLE 538 (684)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHEESSCSSTTSCEECSCBSSSCTTSCCEEEETTTTEEEEGGGCCCG-GGGH
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHHHhccCCCcccccCCeeEEEeccCCCccccccccccccccCCCCCcEeH-HHhH
Confidence 2 21110 011111111112222222 233442 333211 000 00110 1 1222
Q ss_pred HHHcCCCCCCcHHHHHHHHHHHhccCCC---C-CCCcCcccccccccccC--------CC-CCCchhHHHHHHHHHHHcC
Q 010631 372 LVAAGMNYSNSSSIRKACEFLLSKQRPS---G-GWGESYLSCQKKVYSNL--------EG-DRSHVVNTAWAMLALIDAG 438 (505)
Q Consensus 372 L~~~G~~~~~~~~i~ra~~~L~~~Q~~D---G-gWge~~~s~~~~~y~~~--------~~-~~s~~~~Ta~ALlaL~~ag 438 (505)
+...|.....++.+.+.++-+.+.-..| | +|.. |....|... .| +..-+..|+|...+|...|
T Consensus 539 ~~~~G~~~~~dpr~~~Tl~~i~~~L~~~~~~G~~~~R----Y~~d~y~~~~~G~~f~~~g~g~~W~~~t~~~a~al~~~G 614 (684)
T 1lf6_A 539 LVRLGVKSADDPKILNTLKVVDSTIKVDTPKGPSWYR----YNHDGYGEPSKTELYHGAGKGRLWPLLTGERGMYEIAAG 614 (684)
T ss_dssp HHHTTSSCTTCHHHHHHHHHHHHHSEEEETTEEEECS----STTCCCSCSBTTBCCSSSSCCCBBHHHHHHHHHHHHHTT
T ss_pred HHhcCCcCCCCHHHHHHHHHHHHHhccCCCCCCeEec----cCCCCCCcccCCCccccCCCCCchHHHHHHHHHHHHHhC
Confidence 3346665457788888777776544333 4 3322 111112100 01 2345678999999999998
Q ss_pred CCCCCcHHHHHHHHHHHhcCcCCCCCCCC
Q 010631 439 QAETDPTPLHRAARYLINSQMENGDYPQE 467 (505)
Q Consensus 439 ~~~~d~~~i~rgv~~L~~~Q~~~G~w~~~ 467 (505)
.. ..+-+++|....+..|-++|+
T Consensus 615 ~~------A~~~~~~l~~~a~~~gllpE~ 637 (684)
T 1lf6_A 615 KD------ATPYVKAMEKFANEGGIISEQ 637 (684)
T ss_dssp CC------CHHHHHHHHHHSCTTSCCCSC
T ss_pred hH------HHHHHHHHHHhcccCCccCee
Confidence 61 456688888888888888875
No 60
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=95.39 E-value=0.049 Score=55.34 Aligned_cols=129 Identities=12% Similarity=0.221 Sum_probs=77.6
Q ss_pred HHHHHHHHHH-HhcccCCcce-eeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHH
Q 010631 257 KRLYDSVNVI-FSLQNADGGF-ATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDH 334 (505)
Q Consensus 257 ~~i~~Av~~L-l~~Qn~dGgw-~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~ 334 (505)
+-.++.+.|. ...+..+||| ..+..+.. . +| .+ -.....++.|.+++...... ...++..+
T Consensus 15 ~l~~~~l~fw~~~~~D~~GGf~~~~~~d~~-~----~~-~e---------K~l~~nar~i~~~a~a~~~~--~~~~~~~~ 77 (388)
T 2gz6_A 15 ALLNDVLPFWENHSLDSEGGYFTCLDRQGK-V----YD-TD---------KFIWLQNRQVWTFSMLCNQL--EKRENWLK 77 (388)
T ss_dssp HHHHTHHHHHHHHCBCTTSSBCCEEBTTSC-E----EE-CC---------EEHHHHHHHHHHHHHHHHHT--CCCHHHHH
T ss_pred HHHHhHHHHHHhcCCCCCCCEEeEECCCCC-c----CC-cc---------hhHHHHHHHHHHHHHHHHHh--cCCHHHHH
Confidence 3356677877 5577778895 66655432 1 11 11 12457889999998876541 11245667
Q ss_pred HHHHHHHHHHHh-ccccCCCcccC---C-----CCccchHHHHHHHHHHcCCCC---CCcHHHHHHHHHHHhccCC-CCC
Q 010631 335 CIKRAVKFIEKI-QELDGSWYGSW---G-----VCFTYGTWFGVKGLVAAGMNY---SNSSSIRKACEFLLSKQRP-SGG 401 (505)
Q Consensus 335 ~i~rav~~L~~~-Q~~DG~W~g~w---g-----~~~~y~T~~al~aL~~~G~~~---~~~~~i~ra~~~L~~~Q~~-DGg 401 (505)
.++++++||.+. +.++|+|+... | ....|+-++++.||..+.... ..-+..++..++++++... +|.
T Consensus 78 ~A~~~~~~l~~~~~~~~Gg~~~~~d~dg~~~~~~~~~~~~af~i~al~~~y~~tg~~~~l~~A~~~~~~i~~~~~d~~g~ 157 (388)
T 2gz6_A 78 IARNGAKFLAQHGRDDEGNWYFALTRGGEPLVQPYNIFSDCFAAMAFSQYALASGEEWAKDVAMQAYNNVLRRKDNPKGK 157 (388)
T ss_dssp HHHHHHHHHHHHSBCTTSCBCSEECTTSCBCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEcCCCCcccCCcchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 899999999998 67789998442 1 245678889999987643210 1223455677788877643 344
Q ss_pred C
Q 010631 402 W 402 (505)
Q Consensus 402 W 402 (505)
|
T Consensus 158 ~ 158 (388)
T 2gz6_A 158 Y 158 (388)
T ss_dssp -
T ss_pred c
Confidence 3
No 61
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=94.36 E-value=0.69 Score=53.08 Aligned_cols=89 Identities=11% Similarity=0.031 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccccccCC-CCCCCCCcccCCCCCCchhhHHHHHHhH
Q 010631 162 LWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHI-SKGAWPFSTADHGWPISDCTSEGLKASL 240 (505)
Q Consensus 162 vwDTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~-~~GgW~f~~~~~~~pd~d~Ta~al~aL~ 240 (505)
+.|++++++||..+|.+ +..++.++||.+.|..+ +|.+..++.-. .+ +|. + +-.|.|+..+.++.
T Consensus 331 ~RDaa~t~~all~~G~~----e~A~~~l~~L~~~Q~~~--~G~~~~~y~i~G~~-~w~------~-~Q~D~~g~~l~~~~ 396 (1020)
T 1ulv_A 331 ARDMYQSVTALLAAGDE----EAAARGVEWLFTYQQQP--DGHFPQTSRVDGTI-GQN------G-IQLDETAFPILLAN 396 (1020)
T ss_dssp HHHHHHHHHHHHHHTCH----HHHHHHHHHHHHHTCCT--TSCCCSCBCTTSCB-CCC------C-CBTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHcCCH----HHHHHHHHHHHHHhcCC--CCCeeeEEecCCCc-CCC------C-ccCccchHHHHHHH
Confidence 46999999999999853 45788999999999422 37765544311 11 121 1 35799999998887
Q ss_pred HhhhccccccCCccchHHHHHHHHHHHhc
Q 010631 241 LLSKLSSAIVGEPIETKRLYDSVNVIFSL 269 (505)
Q Consensus 241 ~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~ 269 (505)
.+.+. +..+-.+.++++++|+.+.
T Consensus 397 ~~~~~-----d~~~w~~~v~~al~~i~~~ 420 (1020)
T 1ulv_A 397 QIGRT-----DAGFYRNELKPAADYLVAA 420 (1020)
T ss_dssp HHTCC-----CHHHHHHTHHHHHHHHHHH
T ss_pred HHHhc-----CHHHHHHHHHHHHHHHHHh
Confidence 65431 1112123799999999986
No 62
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A
Probab=94.04 E-value=1.5 Score=46.04 Aligned_cols=101 Identities=15% Similarity=0.115 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHHhcCCCcc----hHHHHHHHHHHHHhcccCCCCCCCcc----------ccccCCC--CCCCCCcccCCC
Q 010631 162 LWDTAFAVQAIISTNLVEE----YGATLKKAHKYIKDSQVLEDCPGNLD----------FWYRHIS--KGAWPFSTADHG 225 (505)
Q Consensus 162 vwDTa~a~~AL~~ag~~~~----~~~~l~~A~~~L~~~Q~~~~~~Gd~~----------~~~~~~~--~GgW~f~~~~~~ 225 (505)
+-|.|+++.||.+.|...+ ..+.+++-++|....|...++.|.|. ++..+.. .++|+
T Consensus 68 ~RDaa~t~~aL~~~g~~~~~~~~l~~~a~~y~~~~~~lq~~~~~~G~~~~~~~~glgep~y~vdG~~~~~~w~------- 140 (492)
T 2fba_A 68 TRDSAITFLTVLSELEDNNFNTTLAKAVEYYINTSYNLQRTSNPSGSFDDENHKGLGEPKFNTDGSAYTGAWG------- 140 (492)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTSCBTTBCTTSGGGGGGGCCEECTTSCBCCSCCS-------
T ss_pred cchHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHhcccCCCCCcCcccccccCceeeccCCCcCCcccC-------
Confidence 4599999999999875211 13445555555224554333457776 2333222 23442
Q ss_pred CCCchhhHHHHHHhHHhhhccccccCC-----------------ccchHHHHHHHHHHHhcc
Q 010631 226 WPISDCTSEGLKASLLLSKLSSAIVGE-----------------PIETKRLYDSVNVIFSLQ 270 (505)
Q Consensus 226 ~pd~d~Ta~al~aL~~~~~~~~~~~g~-----------------~~~~~~i~~Av~~Ll~~Q 270 (505)
-|-.|.++..+.++....+.-.. .+. .+-.+.++++++|+...=
T Consensus 141 ~~Q~D~~g~~~~al~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~v~~~w 201 (492)
T 2fba_A 141 RPQNDGPALRAYAISRYLNDVNS-LNEGKLVLTDSGDINFSSTEDIYKNIIKPDLEYVIGYW 201 (492)
T ss_dssp CCBTTHHHHHHHHHHHHHHHHHH-HSTTCCSSTTCTTCSCSSHHHHHHHTHHHHHHHHHHHT
T ss_pred CccccchhHHHHHHHHHHHHhhc-cccchhhhhhhccccccccHHHHHHHHHHHHHHHHHhc
Confidence 26679999988887643211000 010 111257889999998753
No 63
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=92.51 E-value=13 Score=39.88 Aligned_cols=99 Identities=18% Similarity=0.212 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHH----hcCCCcchHHHHHHHHHHHHh---cccCCCCCCCcc--------ccccCCC--CCCCCCcccCC
Q 010631 162 LWDTAFAVQAII----STNLVEEYGATLKKAHKYIKD---SQVLEDCPGNLD--------FWYRHIS--KGAWPFSTADH 224 (505)
Q Consensus 162 vwDTa~a~~AL~----~ag~~~~~~~~l~~A~~~L~~---~Q~~~~~~Gd~~--------~~~~~~~--~GgW~f~~~~~ 224 (505)
+-|.+++++||. .+|. .+..++..+||.. .|...++.|+|. ++.-+.. -|+|+
T Consensus 52 ~RDaa~t~~aL~~~~~~~G~----~~~a~~~~~~l~~~~~lQ~~y~~~G~~~~~~~l~E~~~~ldG~~~~~~w~------ 121 (599)
T 2vn4_A 52 TRDSALVFKNLIDRFTETYD----AGLQRRIEQYITAQVTLQGLSNPSGSLADGSGLGEPKFELTLKPFTGNWG------ 121 (599)
T ss_dssp HHHHHHHHHHHHHHHHHSBC----HHHHHHHHHHHHHHHHHHHCCBTTBCSTTSGGGGCCEECTTSCBCCSCCS------
T ss_pred hhhHHHHHHHHHHHHHhCCC----HHHHHHHHHHHhcccceeeeeCCCCCcccccCcCceEEecCCccccCcCC------
Confidence 459999999999 7775 3567778899975 665444557763 1111111 12332
Q ss_pred CCCCchh-----hHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccC
Q 010631 225 GWPISDC-----TSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNA 272 (505)
Q Consensus 225 ~~pd~d~-----Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~ 272 (505)
-|-.|. |++.+.++........... ....-+.++++++|+...-+.
T Consensus 122 -~~Q~D~~glr~~~~~~~~~~~~~~g~~~~~-~~~~w~~v~~~l~~v~~~w~~ 172 (599)
T 2vn4_A 122 -RPQRDGPALRAIALIGYSKWLINNNYQSTV-SNVIWPIVRNDLNYVAQYWNQ 172 (599)
T ss_dssp -CCCTHHHHHHHHHHHHHHHHHHHTTCHHHH-HHHTHHHHHHHHHHHHHHTTS
T ss_pred -CeeccccchhHHHHHHHHHHHHHhCCcccc-cHHHHHHHHHHHHHHHHhCCC
Confidence 245566 6666555442211000000 001236899999999887654
No 64
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=92.38 E-value=4.5 Score=41.34 Aligned_cols=152 Identities=14% Similarity=0.083 Sum_probs=86.7
Q ss_pred CChhHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCC----CCchhhH
Q 010631 160 SQLWDTAFAVQAIISTNLV--EEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGW----PISDCTS 233 (505)
Q Consensus 160 s~vwDTa~a~~AL~~ag~~--~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~----pd~d~Ta 233 (505)
-.+|+++..+.+++.+... +++.+..+++++||.+. ..+. . .|||.++....+- -..++=|
T Consensus 48 k~~~~nar~i~~~a~a~~~g~~~~l~~A~~~~~fl~~~-~~D~-~-----------~GG~~~s~d~dg~~~~~k~lyd~A 114 (421)
T 2zbl_A 48 THLWITARMLHVYSVAASMGRPGAYDLVDHGIKAMNGA-LRDK-K-----------YGGWYACVNDQGVVDASKQGYQHF 114 (421)
T ss_dssp EEHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHTTT-TBCT-T-----------TSSBCSEEETTEEEECCEEHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHh-ccCc-C-----------CCeEEEEeCCCCCcCCchhHHHHH
Confidence 4579999999999886432 24567889999999888 4431 1 2677666422221 2346678
Q ss_pred HHHHHhHHhhhccccccCCccchHHHHHHHHHHHh-cccC-Ccceeee-ecccccchhcccCcccccCCcccccCCCcch
Q 010631 234 EGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFS-LQNA-DGGFATY-ELMRSYPWLEVLNPAETFGDIVIDYPCVECT 310 (505)
Q Consensus 234 ~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~-~Qn~-dGgw~~~-~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~T 310 (505)
+++.++.. ... .+.+...+...+.++++.+ +..+ +|||-.. +.+.. + ..++.....-
T Consensus 115 f~i~al~~-~~~----tg~~~~l~~a~~~~~~l~~~~~d~~~Ggf~~~~d~d~~--------~-------~~~~~~~n~~ 174 (421)
T 2zbl_A 115 FALLGAAS-AVT----TGHPEARKLLDYTIEVIEKYFWSEEEQMCLESWDEAFS--------Q-------TEDYRGGNAN 174 (421)
T ss_dssp HHHHHHHH-HHT----TTCTTHHHHHHHHHHHHHHHTEETTTTEECCEECTTSC--------S-------BCSCEEHHHH
T ss_pred HHHHHHHH-HHH----hCCccHHHHHHHHHHHHHHHhccCCCCCeeeeecCCCC--------c-------ccccCCCcHH
Confidence 88888876 322 2344445667778888876 4445 7887432 21110 0 0111111222
Q ss_pred HHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhc
Q 010631 311 SASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQ 347 (505)
Q Consensus 311 a~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q 347 (505)
.+.+++|..+.....+ ++..+..++.++++....
T Consensus 175 m~~~~al~~l~~~tgd---~~~~~~A~~~~~~~~~~~ 208 (421)
T 2zbl_A 175 MHAVEAFLIVYDVTHD---KKWLDRALRIASVIIHDV 208 (421)
T ss_dssp HHHHHHHHHHHHTTCC---THHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHHHHh
Confidence 3457777776655332 233445567777766543
No 65
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=92.37 E-value=2.2 Score=43.29 Aligned_cols=192 Identities=13% Similarity=0.089 Sum_probs=96.9
Q ss_pred Chh-HHHHHHHHHHhcCC---CcchHHHHHHHHHHHHhcccCCCCCCC-ccccccCCCCCCCCCcccCCCCCCchhh---
Q 010631 161 QLW-DTAFAVQAIISTNL---VEEYGATLKKAHKYIKDSQVLEDCPGN-LDFWYRHISKGAWPFSTADHGWPISDCT--- 232 (505)
Q Consensus 161 ~vw-DTa~a~~AL~~ag~---~~~~~~~l~~A~~~L~~~Q~~~~~~Gd-~~~~~~~~~~GgW~f~~~~~~~pd~d~T--- 232 (505)
+++ ||-+.+.+|..++. .+++.+...++.+++++...+++ |. +...+-+...|-+......++| .|+.
T Consensus 145 ~~iID~mmni~~L~~A~~~~gd~~y~~~A~~~a~~~l~~~~r~d--gs~~h~~~~D~~tG~~~~~~t~qG~--~dds~Wa 220 (377)
T 2ahf_A 145 RIIIDCLLNLPLLLWAGEQTGDPEYRRVAEAHALKSRRFLVRGD--DSSYHTFYFDPENGNAIRGGTHQGN--TDGSTWT 220 (377)
T ss_dssp EEEGGGGGGHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHTBBTT--SCBCSEEEECTTTCCEEEEECSSSS--STTSCBH
T ss_pred eEEechHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCcCCC--CCeEEEEEeeCCCCCeeeCCCcCCc--CCcchhH
Confidence 455 67777777875432 23467778888999999988742 32 2333323333433111122443 3454
Q ss_pred ---HHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcc
Q 010631 233 ---SEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVEC 309 (505)
Q Consensus 233 ---a~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~ 309 (505)
|.++.++..+-+.. +++..-+.-.+..++++.....||+. .|+.+.. .++ ....|+| .
T Consensus 221 RGqAw~i~gl~~ly~~T----~d~~yL~~A~~la~~~l~~~~~d~~p-ywd~~~~-----~~~------~~~~d~S---a 281 (377)
T 2ahf_A 221 RGQAWGIYGFALNSRYL----GNADLLETAKRMARHFLARVPEDGVV-YWDFEVP-----QEP------SSYRDSS---A 281 (377)
T ss_dssp HHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHTTCCTTSSC-BSBTTSC-----CCT------TSCBCHH---H
T ss_pred HHHHHHHHHHHHHHHHH----CChHHHHHHHHHHHHHHHhhHHhCCc-ccccCCC-----ccC------CCccCCC---H
Confidence 88888887664421 22222345556678888887666762 1221110 000 0011322 2
Q ss_pred hHHHHHHHHHhhhhCCC--CchhhhHHHHHHHHHHHHHhc------cccCCC-------cc--cCCCCccchHHHHHHHH
Q 010631 310 TSASIQALTSFKKLYPG--HWQEDVDHCIKRAVKFIEKIQ------ELDGSW-------YG--SWGVCFTYGTWFGVKGL 372 (505)
Q Consensus 310 Ta~vl~aL~~~~~~~~~--~~~~~i~~~i~rav~~L~~~Q------~~DG~W-------~g--~wg~~~~y~T~~al~aL 372 (505)
++-+..+|..+.+..+. ...++..+...+.++-|.+.- +.+|-. +. ...++.+||-.+-++||
T Consensus 282 ~aiaA~~Ll~L~~~~~~~~~~~~~Y~~~A~~~l~~l~~~y~~~~~~~~~g~L~h~~~~~~~~~~~d~~~~ygDy~~~Eal 361 (377)
T 2ahf_A 282 SAITACGLLEIASQLDESDPERQRFIDAAKTTVTALRDGYAERDDGEAEGFIRRGSYHVRGGISPDDYTIWGDYYYLEAL 361 (377)
T ss_dssp HHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHHHHTBCCCCSSCCCSBSCBCSBTTTTBSSSBCBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecccccCCCCCCCCcCccHHHHHHHHHH
Confidence 33333444444443221 112345567778887776643 223322 10 01235678888888887
Q ss_pred HHc
Q 010631 373 VAA 375 (505)
Q Consensus 373 ~~~ 375 (505)
...
T Consensus 362 ~r~ 364 (377)
T 2ahf_A 362 LRL 364 (377)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 66
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=91.54 E-value=2.7 Score=42.59 Aligned_cols=220 Identities=14% Similarity=0.133 Sum_probs=111.2
Q ss_pred CccchHHHHHHHHHHHhcccCC-cceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchh
Q 010631 252 EPIETKRLYDSVNVIFSLQNAD-GGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQE 330 (505)
Q Consensus 252 ~~~~~~~i~~Av~~Ll~~Qn~d-Ggw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~ 330 (505)
.+...+.+.++.++|.+.-++. |+..++....+..+ .+...+| |-.-|.+|...++...+ +
T Consensus 106 ~~~~~~~~~~aA~~L~~r~~~~~g~i~sw~~~~~~~~---------~~~~iID------~mmni~~L~~A~~~~gd---~ 167 (377)
T 2ahf_A 106 DESARKLALDAADVLMRRWRADAGIIQAWGPKGDPEN---------GGRIIID------CLLNLPLLLWAGEQTGD---P 167 (377)
T ss_dssp CHHHHHHHHHHHHHHHTTEETTTTEECCBSSTTCTTT---------TTEEEGG------GGGGHHHHHHHHHHHCC---T
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCCeEEeccCCCCCCC---------CceEEec------hHHHHHHHHHHHHHhCC---H
Confidence 3445678889999999877776 55554432111000 1111222 22336777766554222 2
Q ss_pred hhHHHHHHHHHHHHHhc-cccCCCccc-------------C---CC----CccchHHHHHHHHHHcCCCCCCc---HHHH
Q 010631 331 DVDHCIKRAVKFIEKIQ-ELDGSWYGS-------------W---GV----CFTYGTWFGVKGLVAAGMNYSNS---SSIR 386 (505)
Q Consensus 331 ~i~~~i~rav~~L~~~Q-~~DG~W~g~-------------w---g~----~~~y~T~~al~aL~~~G~~~~~~---~~i~ 386 (505)
+..+...++++++.+.+ ++||+.+-. | |- +..-|.+|++.||..+-..-.+. +..+
T Consensus 168 ~y~~~A~~~a~~~l~~~~r~dgs~~h~~~~D~~tG~~~~~~t~qG~~dds~WaRGqAw~i~gl~~ly~~T~d~~yL~~A~ 247 (377)
T 2ahf_A 168 EYRRVAEAHALKSRRFLVRGDDSSYHTFYFDPENGNAIRGGTHQGNTDGSTWTRGQAWGIYGFALNSRYLGNADLLETAK 247 (377)
T ss_dssp HHHHHHHHHHHHHHHHTBBTTSCBCSEEEECTTTCCEEEEECSSSSSTTSCBHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCeEEEEEeeCCCCCeeeCCCcCCcCCcchhHHHHHHHHHHHHHHHHHHCChHHHHHHH
Confidence 34566777788887765 555654211 1 11 12224688888887642210122 2556
Q ss_pred HHHHHHHhccCCCCC--CCcCcccccccccccCCCCCCchhHH---HHHHHHHHHcCCCC--CC---cHHHHHHHHHHHh
Q 010631 387 KACEFLLSKQRPSGG--WGESYLSCQKKVYSNLEGDRSHVVNT---AWAMLALIDAGQAE--TD---PTPLHRAARYLIN 456 (505)
Q Consensus 387 ra~~~L~~~Q~~DGg--Wge~~~s~~~~~y~~~~~~~s~~~~T---a~ALlaL~~ag~~~--~d---~~~i~rgv~~L~~ 456 (505)
+..++++++..+||+ |-... ++. +...-+++.+ |.+|+-|....... .+ .+..++.++-|.+
T Consensus 248 ~la~~~l~~~~~d~~pywd~~~---~~~-----~~~~~d~Sa~aiaA~~Ll~L~~~~~~~~~~~~~Y~~~A~~~l~~l~~ 319 (377)
T 2ahf_A 248 RMARHFLARVPEDGVVYWDFEV---PQE-----PSSYRDSSASAITACGLLEIASQLDESDPERQRFIDAAKTTVTALRD 319 (377)
T ss_dssp HHHHHHHTTCCTTSSCBSBTTS---CCC-----TTSCBCHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHhCCcccccCC---Ccc-----CCCccCCCHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHH
Confidence 678899999877887 32211 100 1111234444 45555554443100 01 1246777887776
Q ss_pred cC------cCCCCCCCCcccceeccc-cccccCCchhhHHHHHHHHHHHH
Q 010631 457 SQ------MENGDYPQEEIMGVFNRN-CMISYSAYRNIFPIWALGEYRCR 499 (505)
Q Consensus 457 ~Q------~~~G~w~~~~~~g~f~~~-~~~~y~~y~~~fpl~AL~~y~~~ 499 (505)
.- +.+|--.... +..|.. -...--.|-.+|=+-||-||.+.
T Consensus 320 ~y~~~~~~~~~g~L~h~~--~~~~~~~~~d~~~~ygDy~~~Eal~r~~~~ 367 (377)
T 2ahf_A 320 GYAERDDGEAEGFIRRGS--YHVRGGISPDDYTIWGDYYYLEALLRLERG 367 (377)
T ss_dssp HTBCCCCSSCCCSBSCBC--SBTTTTBSSSBCBHHHHHHHHHHHHHHHHC
T ss_pred HHhcCCCCCCCeEEeccc--ccCCCCCCCCcCccHHHHHHHHHHHHHHcC
Confidence 53 1222222111 112221 12233456777889999998763
No 67
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=91.12 E-value=0.85 Score=46.56 Aligned_cols=130 Identities=9% Similarity=0.119 Sum_probs=77.7
Q ss_pred HHHHHHHHHHH-hcccCCcceee-eecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHH
Q 010631 257 KRLYDSVNVIF-SLQNADGGFAT-YELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDH 334 (505)
Q Consensus 257 ~~i~~Av~~Ll-~~Qn~dGgw~~-~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~ 334 (505)
..+++.+.|-. ..+.++|||.. ++.+.. .. + . .......+++.|.+++....... .++..+
T Consensus 13 ~~~~~~l~fw~~~~~D~~GGf~~~l~~dg~-~~----~---~------~~k~l~~n~r~i~~~a~a~~~~g---~~~~l~ 75 (402)
T 3gt5_A 13 THISDTMAFYHPRCIDSAGGFFHYFRDDGS-IY----N---A------THRHLVSSTRFVFNYAMAYLQFG---TAEYLD 75 (402)
T ss_dssp HHHHHHHHHHTTTTBCTTSSBCCEECTTSC-EE----E---S------SEEEHHHHHHHHHHHHHHHHHHC---CHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcCeeeEECCCCC-CC----C---C------CchhHHHHHHHHHHHHHHHHhhC---ChHHHH
Confidence 45677888764 56778899964 322211 00 0 0 01123468899999988764322 244567
Q ss_pred HHHHHHHHHHHhc-ccc-CCCcccC--C-----CCccchHHHHHHHHHHcCCCC--CCcHHHHHHHHHHHhcc-CCC-CC
Q 010631 335 CIKRAVKFIEKIQ-ELD-GSWYGSW--G-----VCFTYGTWFGVKGLVAAGMNY--SNSSSIRKACEFLLSKQ-RPS-GG 401 (505)
Q Consensus 335 ~i~rav~~L~~~Q-~~D-G~W~g~w--g-----~~~~y~T~~al~aL~~~G~~~--~~~~~i~ra~~~L~~~Q-~~D-Gg 401 (505)
.++++++||.+.. .++ |+|+-+. | ..+.|.-++++.||..+.... ...+.+++..++|.+.- .++ |+
T Consensus 76 ~A~~~~~fl~~~~~d~~~Gg~~~~~~dG~~~~~~~~lyd~Af~i~al~~~~~tgd~~~l~~A~~l~~~i~~~f~d~~~G~ 155 (402)
T 3gt5_A 76 AVHHGLSYVRDVHRNPATGGYAWTLCDDRVEDDTNHCYGLAFVMLAYSCGLKVGIKQAREWMDETWCLLERHFWDAEYGL 155 (402)
T ss_dssp HHHHHHHHHHHTTBCTTTSCBCSEEETTEEEECCEEHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTEETTTTE
T ss_pred HHHHHHHHHHHhCccCCCCcEEEEeeCCCCCcCCcchHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcCCcCCC
Confidence 8899999999854 455 8887432 2 236788899999988643220 22344555667777663 333 55
Q ss_pred CC
Q 010631 402 WG 403 (505)
Q Consensus 402 Wg 403 (505)
+-
T Consensus 156 ~~ 157 (402)
T 3gt5_A 156 YK 157 (402)
T ss_dssp EC
T ss_pred ch
Confidence 43
No 68
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=89.72 E-value=5 Score=40.91 Aligned_cols=217 Identities=13% Similarity=0.119 Sum_probs=107.4
Q ss_pred HHHHHhhhhhceeeeCCCceeecCC------CCChh-HHHHHHHHHHhcCC---CcchHHHHHHHHHHHHhcccCCCCCC
Q 010631 134 FKLHIPRINDYLWIAEDGMKVQGYN------GSQLW-DTAFAVQAIISTNL---VEEYGATLKKAHKYIKDSQVLEDCPG 203 (505)
Q Consensus 134 ~~~~~~~l~~~~~~~~~g~~~q~~~------~s~vw-DTa~a~~AL~~ag~---~~~~~~~l~~A~~~L~~~Q~~~~~~G 203 (505)
+.++.+.|..- .++.+..+|..+ ..++| |+.+.+.+|..++. .+++.+.-.++.+++++...+++ |
T Consensus 139 ~~~aA~~L~~r--~~~~~g~iqsw~~~~~~~~~~~iID~~mni~~L~~A~~~~gd~~y~~~A~~ha~~~l~~~~r~d--g 214 (397)
T 2zzr_A 139 TIKAADKLMER--YQEKGGFIQAWGELGYKEHYRLIIDCLLNIQLLFFAYEQTGDEKYRQVAVNHFYASANNVVRDD--S 214 (397)
T ss_dssp HHHHHHHHHTT--EETTTTEECCSSSTTCGGGCEEETTHHHHTHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTBCTT--S
T ss_pred HHHHHHHHHHH--hCcCCCEEEecccCCCCCCCceeechHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCcCCC--C
Confidence 33444555332 156665566542 12444 78888888887642 23466677778889999888752 3
Q ss_pred C-ccccccCCCCCCCCCcccCCCCCCchhh------HHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcce
Q 010631 204 N-LDFWYRHISKGAWPFSTADHGWPISDCT------SEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGF 276 (505)
Q Consensus 204 d-~~~~~~~~~~GgW~f~~~~~~~pd~d~T------a~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw 276 (505)
. +...+-+...|-+......++| .|+. |.++.++..+.+.. +++..-+...+..++++..-..||+
T Consensus 215 s~~h~~~~d~~~G~~~~~~t~qGy--~dds~WaRGqAw~i~gl~~lY~~T----~d~~yL~~A~~la~~~l~~~~~d~~- 287 (397)
T 2zzr_A 215 SAFHTFYFDPETGEPLKGVTRQGY--SDESSWARGQAWGIYGIPLSYRKM----KDYQQIILFKGMTNYFLNRLPEDKV- 287 (397)
T ss_dssp CBCSEEEECTTTCCEEEEECTTSS--STTSCBHHHHHHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHTCCTTSC-
T ss_pred CeEEEEEeeCCCCCcccCCccccc--CcchhhHHHHHHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHhhHHhCC-
Confidence 2 2222222223443222222443 4554 88888887764421 2222223344455666665444554
Q ss_pred eeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhh--hHHHHHHHHHHHHHhc------c
Q 010631 277 ATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQED--VDHCIKRAVKFIEKIQ------E 348 (505)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~--i~~~i~rav~~L~~~Q------~ 348 (505)
+.|+..... + + ....|+ ..++-+..+|..+....++...++ ..+...+.++-|.+.- +
T Consensus 288 pywdt~~~~-----~-~-----~~~~D~---Sa~aiaA~~Ll~L~~~~~~~~~~~~~Y~~~A~~~l~~l~~~y~~~~~~~ 353 (397)
T 2zzr_A 288 SYWDLIFTD-----G-S-----GQPRDT---SATATAVCGIHEMLKYLPEVDPDKETYKYAMHTMLRSLIEQYSNNELIA 353 (397)
T ss_dssp CBSBTTCCT-----T-S-----CCCBCH---HHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHHHHHTBCCCCCT
T ss_pred ccccCCCCC-----C-C-----CCcCCC---CHHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 223221100 0 0 011232 223333344444444323211123 5566777777776643 1
Q ss_pred ccCCCc---ccC------CCCccchHHHHHHHHHHc
Q 010631 349 LDGSWY---GSW------GVCFTYGTWFGVKGLVAA 375 (505)
Q Consensus 349 ~DG~W~---g~w------g~~~~y~T~~al~aL~~~ 375 (505)
.+|--. +.+ .++.+||-.+-++||...
T Consensus 354 ~~glL~h~~~~~~~~~~~d~~~~~gDYy~~Eal~r~ 389 (397)
T 2zzr_A 354 GRPLLLHGVYSWHSGKGVDEGNIWGDYYYLEALIRF 389 (397)
T ss_dssp TCCSBCCEEEETTTTEEEEECBHHHHHHHHHHHHHH
T ss_pred CCceeeeceeeCCCCCCCCCCcchHHHHHHHHHHHH
Confidence 222111 011 135678999999999875
No 69
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=89.51 E-value=11 Score=37.97 Aligned_cols=102 Identities=13% Similarity=0.003 Sum_probs=60.7
Q ss_pred CCChhHHHHHHHHHHhcCC------CcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCC-CCCCcccCCC-----C
Q 010631 159 GSQLWDTAFAVQAIISTNL------VEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKG-AWPFSTADHG-----W 226 (505)
Q Consensus 159 ~s~vwDTa~a~~AL~~ag~------~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~G-gW~f~~~~~~-----~ 226 (505)
...+|+.|.++.+++.+.. .+++.+..+++++||.+.-... .| | ||.++....+ -
T Consensus 52 ~k~l~~nar~l~~~a~a~~~~~~~~~~~~l~~A~~~~~fl~~~~~d~--~g-----------g~g~~~s~d~dg~~~~~~ 118 (402)
T 1fp3_A 52 LKYVWLQGRQVWMYCRLYRKLERFHRPELLDAAKAGGEFLLRHARVA--PP-----------EKKCAFVLTRDGRPVKVQ 118 (402)
T ss_dssp CEEHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHTBSS--TT-----------SCCBCSEECTTSCEEECC
T ss_pred ccchhhhHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhccCc--CC-----------CCceEEEECCCCCccccc
Confidence 3558999999998876431 2356788999999999974321 11 3 6665532222 1
Q ss_pred CCchhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcc--cCCccee
Q 010631 227 PISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQ--NADGGFA 277 (505)
Q Consensus 227 pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Q--n~dGgw~ 277 (505)
...++-|+.+.++..+.+.. |.+...+...+.++++++.- .++|+|.
T Consensus 119 ~~lyd~af~~~a~~~~~~at----gd~~~~~~A~~l~~~~~~~~~d~~~G~f~ 167 (402)
T 1fp3_A 119 RSIFSECFYTMAMNELWRVT----AEARYQSEAVDMMDQIVHWVREDPSGLGR 167 (402)
T ss_dssp SSSHHHHHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHHHHTCGGGGCC
T ss_pred cchHHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHHhccCCCcccC
Confidence 23566888888887655421 22223344455566665543 4567663
No 70
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=88.34 E-value=9.3 Score=38.87 Aligned_cols=220 Identities=12% Similarity=0.083 Sum_probs=111.0
Q ss_pred CccchHHHHHHHHHHHhcccCCcce-eeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchh
Q 010631 252 EPIETKRLYDSVNVIFSLQNADGGF-ATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQE 330 (505)
Q Consensus 252 ~~~~~~~i~~Av~~Ll~~Qn~dGgw-~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~ 330 (505)
.+...+.+.+|.++|.+.-++.||+ .++....+. -+++.+.-+..-|.+|..+++...+ +
T Consensus 132 ~~~~~~~~~~aA~~L~~r~~~~~g~iqsw~~~~~~----------------~~~~~iID~~mni~~L~~A~~~~gd---~ 192 (397)
T 2zzr_A 132 DVKALEATIKAADKLMERYQEKGGFIQAWGELGYK----------------EHYRLIIDCLLNIQLLFFAYEQTGD---E 192 (397)
T ss_dssp CHHHHHHHHHHHHHHHTTEETTTTEECCSSSTTCG----------------GGCEEETTHHHHTHHHHHHHHHHCC---H
T ss_pred CHHHHHHHHHHHHHHHHHhCcCCCEEEecccCCCC----------------CCCceeechHhHHHHHHHHHHHhCC---H
Confidence 3445678999999998876777554 444311100 0111222344567788877654322 3
Q ss_pred hhHHHHHHHHHHHHHhc-cccCCCccc----------------CCCCccc----hHHHHHHHHHHcCCCCCCc---HHHH
Q 010631 331 DVDHCIKRAVKFIEKIQ-ELDGSWYGS----------------WGVCFTY----GTWFGVKGLVAAGMNYSNS---SSIR 386 (505)
Q Consensus 331 ~i~~~i~rav~~L~~~Q-~~DG~W~g~----------------wg~~~~y----~T~~al~aL~~~G~~~~~~---~~i~ 386 (505)
+..+...+..+++.+.. ++||+-+-. -|-...| |.+|++.||...-..-.+. +..+
T Consensus 193 ~y~~~A~~ha~~~l~~~~r~dgs~~h~~~~d~~~G~~~~~~t~qGy~dds~WaRGqAw~i~gl~~lY~~T~d~~yL~~A~ 272 (397)
T 2zzr_A 193 KYRQVAVNHFYASANNVVRDDSSAFHTFYFDPETGEPLKGVTRQGYSDESSWARGQAWGIYGIPLSYRKMKDYQQIILFK 272 (397)
T ss_dssp HHHHHHHHHHHHHHHHTBCTTSCBCSEEEECTTTCCEEEEECTTSSSTTSCBHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCeEEEEEeeCCCCCcccCCcccccCcchhhHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 34455666777777655 444443211 1111122 5688888888742110122 3345
Q ss_pred HHHHHHHhccCCCCC--CCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCC-CC---Cc----HHHHHHHHHHHh
Q 010631 387 KACEFLLSKQRPSGG--WGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQA-ET---DP----TPLHRAARYLIN 456 (505)
Q Consensus 387 ra~~~L~~~Q~~DGg--Wge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~-~~---d~----~~i~rgv~~L~~ 456 (505)
+..++++++-.+||+ |-..... . +...-+++.+|-+..+|+..... +. +. +..++.++-|.+
T Consensus 273 ~la~~~l~~~~~d~~pywdt~~~~-~-------~~~~~D~Sa~aiaA~~Ll~L~~~~~~~~~~~~~Y~~~A~~~l~~l~~ 344 (397)
T 2zzr_A 273 GMTNYFLNRLPEDKVSYWDLIFTD-G-------SGQPRDTSATATAVCGIHEMLKYLPEVDPDKETYKYAMHTMLRSLIE 344 (397)
T ss_dssp HHHHHHHHTCCTTSCCBSBTTCCT-T-------SCCCBCHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHhCCccccCCCCC-C-------CCCcCCCCHHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHHH
Confidence 567888888766776 4221110 0 01122356666665565543221 10 11 235677777776
Q ss_pred cCc-CCC---CCCCCcccceeccccccc-cCCchhhHHHHHHHHHHH
Q 010631 457 SQM-ENG---DYPQEEIMGVFNRNCMIS-YSAYRNIFPIWALGEYRC 498 (505)
Q Consensus 457 ~Q~-~~G---~w~~~~~~g~f~~~~~~~-y~~y~~~fpl~AL~~y~~ 498 (505)
.-. .+| ..--..-++..|..-.+. --.|-.||=|-||.|+.+
T Consensus 345 ~y~~~~~~~~~glL~h~~~~~~~~~~~d~~~~~gDYy~~Eal~r~~~ 391 (397)
T 2zzr_A 345 QYSNNELIAGRPLLLHGVYSWHSGKGVDEGNIWGDYYYLEALIRFYK 391 (397)
T ss_dssp HTBCCCCCTTCCSBCCEEEETTTTEEEEECBHHHHHHHHHHHHHHHS
T ss_pred HHhccCCCCCCceeeeceeeCCCCCCCCCCcchHHHHHHHHHHHHhc
Confidence 531 111 111111112233332222 234788999999999865
No 71
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A*
Probab=86.10 E-value=29 Score=36.10 Aligned_cols=92 Identities=15% Similarity=0.193 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHH---hcCCCcchHHHHHHHHHHHHh---cccCCCCCCCcc------ccc-cCCC--CCCCCCcccCCCC
Q 010631 162 LWDTAFAVQAII---STNLVEEYGATLKKAHKYIKD---SQVLEDCPGNLD------FWY-RHIS--KGAWPFSTADHGW 226 (505)
Q Consensus 162 vwDTa~a~~AL~---~ag~~~~~~~~l~~A~~~L~~---~Q~~~~~~Gd~~------~~~-~~~~--~GgW~f~~~~~~~ 226 (505)
+-|.++++.||. .+|..+ ..++..+||.. .|...++.|.|. .+| .+.+ .++|+ -
T Consensus 53 ~RDaa~t~~aL~~~~~~G~~~----~a~~~~~~l~~~~~lQ~~~~~~G~l~~~glgE~~y~vdG~~~~~~w~-------~ 121 (472)
T 1gai_A 53 TRDSGLVIKTLVDLFRNGDTD----LLSTIEHYISSQAIIQGVSNPSGDLSSGGLGEPKFNVDETAYTGSWG-------R 121 (472)
T ss_dssp HHHHHHHHHHHHHHHHTTCGG----GHHHHHHHHHHHHHHHHCCBTTBCTTTTGGGCCEECTTSCBCCSCCS-------C
T ss_pred hhhHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHHhhcccCCCCccccCCCCCceEccCCCccCCcCC-------C
Confidence 459999999999 788643 35566677766 442223457775 333 2111 23442 2
Q ss_pred CCchh-----hHHHHHHhHHhhhccccccCCc--c---chHHHHHHHHHHHhcc
Q 010631 227 PISDC-----TSEGLKASLLLSKLSSAIVGEP--I---ETKRLYDSVNVIFSLQ 270 (505)
Q Consensus 227 pd~d~-----Ta~al~aL~~~~~~~~~~~g~~--~---~~~~i~~Av~~Ll~~Q 270 (505)
|-.|. ++..+.++. +... |.. + .-+.++++++||...=
T Consensus 122 ~Q~D~~g~ra~~~~~~~~~-l~~~-----g~~~~~~~~~w~~i~~~l~~v~~~w 169 (472)
T 1gai_A 122 PQRDGPALRATAMIGFGQW-LLDN-----GYTSAATEIVWPLVRNDLSYVAQYW 169 (472)
T ss_dssp CCTHHHHHHHHHHHHHHHH-HHHT-----TCHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred ccccccchhHHHHHHHHHH-HHHc-----CCccccchhHHHHHHHHHHHHHHhc
Confidence 55777 566666554 2221 111 1 2356999999997753
No 72
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}
Probab=85.01 E-value=2.8 Score=44.92 Aligned_cols=86 Identities=14% Similarity=0.198 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhcccCCcceeeeecccccchhcc----------cCcccccCCcccccCCCcchHHHHHHHHHhhhh--C
Q 010631 257 KRLYDSVNVIFSLQNADGGFATYELMRSYPWLEV----------LNPAETFGDIVIDYPCVECTSASIQALTSFKKL--Y 324 (505)
Q Consensus 257 ~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~----------~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~--~ 324 (505)
+.++=++|||++||.++|++-. ... + .|-+. +|..+.-.+..++. ...++..+.||+..... +
T Consensus 194 dE~rWg~D~llkm~~~~g~~y~-qVg-d-~W~~d~~~R~~~~~~~~~~~~~~~y~~~~--~~~agl~aAALA~Asrvf~d 268 (586)
T 3h7l_A 194 EEALFGADFLVRMQNEKGFFYM-TVF-D-KWSKDTAQREICAYETQLGHKFDDYQAGF--RQGGGVAIAALAAASRLGVH 268 (586)
T ss_dssp HHHHHHHHHHHHTBCTTSCBBC-EEE-C-TTCCCGGGCEEEEEETTTTEEESCCBCCG--GGTHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHhcccCCCeEEE-Eec-C-CCCCCCCccccccccCCCCCCCcceecCC--CCcHHHHHHHHHHHhcccCC
Confidence 5566788999999999998732 111 1 13221 00000000111221 12355667777776655 3
Q ss_pred CCCchhhhHHHHHHHHHHHHHhc
Q 010631 325 PGHWQEDVDHCIKRAVKFIEKIQ 347 (505)
Q Consensus 325 ~~~~~~~i~~~i~rav~~L~~~Q 347 (505)
+.+..++.-.+.+++.+|+.+..
T Consensus 269 ~~~~a~~~L~aA~~a~~fa~~~~ 291 (586)
T 3h7l_A 269 GEYDQQKYRNAAENGYWHLKEHN 291 (586)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHHHhcC
Confidence 44444555667788999998764
No 73
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=84.00 E-value=5.7 Score=43.47 Aligned_cols=125 Identities=12% Similarity=0.188 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHhcc--ccCCCccc----CC------CCccch------HHHHHHHHHHcCCCCCCcHHHHHHHHHHHh
Q 010631 333 DHCIKRAVKFIEKIQE--LDGSWYGS----WG------VCFTYG------TWFGVKGLVAAGMNYSNSSSIRKACEFLLS 394 (505)
Q Consensus 333 ~~~i~rav~~L~~~Q~--~DG~W~g~----wg------~~~~y~------T~~al~aL~~~G~~~~~~~~i~ra~~~L~~ 394 (505)
...+.+++.-|+..+. +.|..-.. |+ .+..|. +.+.+.||..+|. .+..++.++||.+
T Consensus 295 ~~~~~rs~~~Lk~l~~~~~~G~iiAs~t~~~~e~~~~~~~~dY~~~W~RD~~~~~~al~~~G~----~~~a~~~l~~l~~ 370 (684)
T 1lf6_A 295 NSLYYNSMMILKASEDKTNKGAYIASLSIPWGDGQRDDNTGGYHLVWSRDLYHVANAFIAAGD----VDSANRSLDYLAK 370 (684)
T ss_dssp CHHHHHHHHHHHTTBCSSSTTCBCSCSSCTTGGGSBSBSCCGGGSBCHHHHHHHHHHHHHHTC----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCccEEeecCCCCccccCCCCCCCCEEEeccHHHHHHHHHHHcCC----HHHHHHHHHHHHh
Confidence 3567777777777665 25654211 11 112233 5778888888874 3577889999999
Q ss_pred ccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHH-HHHHHHHHHhcC--cCCCCCCCC
Q 010631 395 KQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTP-LHRAARYLINSQ--MENGDYPQE 467 (505)
Q Consensus 395 ~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~-i~rgv~~L~~~Q--~~~G~w~~~ 467 (505)
.|.++|+|-........+.| +..+.-.|+..|+++....... .-.. ++++++|+.+.- ...|-|.+.
T Consensus 371 ~q~~~G~~~~~~~~~G~p~w-----~~~Q~D~~g~~l~~~~~~~~~g-~~~~~v~~al~~i~~~~~~~~~g~WE~~ 440 (684)
T 1lf6_A 371 VVKDNGMIPQNTWISGKPYW-----TGIQLDEQADPIILSYRLKRYD-LYDSLVKPLADFIIKIGPKTGQERWEEI 440 (684)
T ss_dssp HHHHHSSCCSCBCTTSCBCC-----CCCCHHHHHHHHHHHHHTTCGG-GTTTTHHHHHHHHHHHCSSBSSCTTSSC
T ss_pred hcCCCCCcccceeCCCCccc-----CCccccchHHHHHHHHHHHHcC-chHHHHHHHHHHHHHhCCCCCccccccc
Confidence 99999997532221111111 2345678888888876543321 1234 899999999963 334668765
No 74
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=83.87 E-value=12 Score=42.97 Aligned_cols=127 Identities=17% Similarity=0.280 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHHHHHhcccc--CC--------Cccc------CCCCccc----hHHHHHHHHHHcCCCCCCcHHHHHHHH
Q 010631 331 DVDHCIKRAVKFIEKIQELD--GS--------WYGS------WGVCFTY----GTWFGVKGLVAAGMNYSNSSSIRKACE 390 (505)
Q Consensus 331 ~i~~~i~rav~~L~~~Q~~D--G~--------W~g~------wg~~~~y----~T~~al~aL~~~G~~~~~~~~i~ra~~ 390 (505)
...+.+.|++-=|+-.+.+. |+ |++. |+ .|-| .+++++.||..+|.. +..++.++
T Consensus 281 ~~~~~~~rSl~~Lk~l~~~~t~GaiiAS~t~p~~e~~gg~rn~d-gYry~W~RDaa~t~~all~~G~~----e~A~~~l~ 355 (1020)
T 1ulv_A 281 ALRTQYDVSLMTVKSHEDKTFPGAFIASLTIPWGQAASAETHRE-GYHAVWARDMYQSVTALLAAGDE----EAAARGVE 355 (1020)
T ss_dssp HHHHHHHHHHHHHHTTBCSSSTTCBCSCSSCTTGGGSBCSSCCC-TTCSBCHHHHHHHHHHHHHHTCH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCeEEEeCCCCcccccCCccCCC-CCceEccchHHHHHHHHHHcCCH----HHHHHHHH
Confidence 34556777777777776542 43 4321 21 2444 377888899988753 67788999
Q ss_pred HHHhcc-CCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCC--cHHHHHHHHHHHhcC--cCCCCCC
Q 010631 391 FLLSKQ-RPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETD--PTPLHRAARYLINSQ--MENGDYP 465 (505)
Q Consensus 391 ~L~~~Q-~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d--~~~i~rgv~~L~~~Q--~~~G~w~ 465 (505)
||.+.| +++|.|-..+.......|. ..+.-.|++.|+++......+.+ +..++++++|+.+.- ...|-|.
T Consensus 356 ~L~~~Q~~~~G~~~~~y~i~G~~~w~-----~~Q~D~~g~~l~~~~~~~~~d~~~w~~~v~~al~~i~~~g~~~~~~~WE 430 (1020)
T 1ulv_A 356 WLFTYQQQPDGHFPQTSRVDGTIGQN-----GIQLDETAFPILLANQIGRTDAGFYRNELKPAADYLVAAGPKTPQERWE 430 (1020)
T ss_dssp HHHHHTCCTTSCCCSCBCTTSCBCCC-----CCBTHHHHHHHHHHHHHTCCCHHHHHHTHHHHHHHHHHHCSCBSBCTTS
T ss_pred HHHHHhcCCCCCeeeEEecCCCcCCC-----CccCccchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCCChhhhc
Confidence 999999 8999875432211112221 23668899999998877543200 114899999999973 2335676
Q ss_pred CC
Q 010631 466 QE 467 (505)
Q Consensus 466 ~~ 467 (505)
+.
T Consensus 431 e~ 432 (1020)
T 1ulv_A 431 ET 432 (1020)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 75
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A
Probab=80.94 E-value=3.5 Score=43.32 Aligned_cols=130 Identities=13% Similarity=0.131 Sum_probs=71.8
Q ss_pred chhhHHHHHHhHHhhhccccccCCccchHHHHHHHHH---HHhcccCCccee----------eeecccccchhcccCccc
Q 010631 229 SDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNV---IFSLQNADGGFA----------TYELMRSYPWLEVLNPAE 295 (505)
Q Consensus 229 ~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~---Ll~~Qn~dGgw~----------~~~~~~~~~~l~~~~~~e 295 (505)
+=|.|+++.+|+.+..... . ..--.+.+.+-++| |....+++|.|. -|..+.... ..
T Consensus 68 ~RDaa~t~~aL~~~g~~~~-~--~~~l~~~a~~y~~~~~~lq~~~~~~G~~~~~~~~glgep~y~vdG~~~-------~~ 137 (492)
T 2fba_A 68 TRDSAITFLTVLSELEDNN-F--NTTLAKAVEYYINTSYNLQRTSNPSGSFDDENHKGLGEPKFNTDGSAY-------TG 137 (492)
T ss_dssp HHHHHHHHHHHHHHHHHTT-T--CHHHHHHHHHHHHHHHHHHTSCBTTBCTTSGGGGGGGCCEECTTSCBC-------CS
T ss_pred cchHHHHHHHHHHhCcccc-c--ccchHHHHHHHHHHHHHHhcccCCCCCcCcccccccCceeeccCCCcC-------Cc
Confidence 3467888888876542100 0 00013455666665 444448899886 343332210 00
Q ss_pred ccCCcccccCCCcchHHHHHHHHHhhhhC--CCC--------------chhhh-HHHHHHHHHHHHHhcc-c-cCCCccc
Q 010631 296 TFGDIVIDYPCVECTSASIQALTSFKKLY--PGH--------------WQEDV-DHCIKRAVKFIEKIQE-L-DGSWYGS 356 (505)
Q Consensus 296 ~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~--~~~--------------~~~~i-~~~i~rav~~L~~~Q~-~-DG~W~g~ 356 (505)
.+ ..+--|.++.++.+|..+.+.. .+. ....+ .+.|++.++|+.+.-+ + -|-|..+
T Consensus 138 ~w-----~~~Q~D~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~v~~~w~~pd~dlWEer 212 (492)
T 2fba_A 138 AW-----GRPQNDGPALRAYAISRYLNDVNSLNEGKLVLTDSGDINFSSTEDIYKNIIKPDLEYVIGYWDSTGFDLWEEN 212 (492)
T ss_dssp CC-----SCCBTTHHHHHHHHHHHHHHHHHHHSTTCCSSTTCTTCSCSSHHHHHHHTHHHHHHHHHHHTTSCEECTTSCC
T ss_pred cc-----CCccccchhHHHHHHHHHHHHhhccccchhhhhhhccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCcCcc
Confidence 11 2244678999888876542210 010 00223 3689999999998654 3 3778766
Q ss_pred CCCCccchHHHHHHHHHH
Q 010631 357 WGVCFTYGTWFGVKGLVA 374 (505)
Q Consensus 357 wg~~~~y~T~~al~aL~~ 374 (505)
.|. ++|..+.+..||..
T Consensus 213 ~g~-~~~T~~~~~~AL~~ 229 (492)
T 2fba_A 213 QGR-HFFTSLVQQKALAY 229 (492)
T ss_dssp EEC-CHHHHHHHHHHHHH
T ss_pred CCC-ChHHHHHHHHHHHH
Confidence 554 77777766677754
No 76
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=80.73 E-value=4.4 Score=40.92 Aligned_cols=129 Identities=10% Similarity=0.021 Sum_probs=72.7
Q ss_pred HHHHHHHHHH-hcccC-Cccee-eeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHH
Q 010631 258 RLYDSVNVIF-SLQNA-DGGFA-TYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDH 334 (505)
Q Consensus 258 ~i~~Av~~Ll-~~Qn~-dGgw~-~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~ 334 (505)
.+++++.+.. ....+ .|||. .+..+... +| + ......+++.|.+++......+....++..+
T Consensus 18 ~~~~~l~~w~~~~~D~~~GGf~~~~~~dg~~-----~~----~------~k~l~~nar~l~~~a~a~~~~~~~~~~~~l~ 82 (402)
T 1fp3_A 18 ELDRVMAFWLEHSHDREHGGFFTCLGRDGRV-----YD----D------LKYVWLQGRQVWMYCRLYRKLERFHRPELLD 82 (402)
T ss_dssp HHHHHHHHHHHHSBCTTTSSBCCCBCTTSCB-----SC----C------CEEHHHHHHHHHHHHHHHHHCGGGCCHHHHH
T ss_pred HHHHHHHHhhccCCCCCCCCEeeEECCCCCC-----CC----C------ccchhhhHHHHHHHHHHHHHhcccCCHHHHH
Confidence 3578888888 55553 68984 33332211 00 0 1123457788888876554320011245567
Q ss_pred HHHHHHHHHHHh-ccccC--CCcccC---C-----CCccchHHHHHHHHHHc----CCCCCCcHHHHHHHHHHHhcc--C
Q 010631 335 CIKRAVKFIEKI-QELDG--SWYGSW---G-----VCFTYGTWFGVKGLVAA----GMNYSNSSSIRKACEFLLSKQ--R 397 (505)
Q Consensus 335 ~i~rav~~L~~~-Q~~DG--~W~g~w---g-----~~~~y~T~~al~aL~~~----G~~~~~~~~i~ra~~~L~~~Q--~ 397 (505)
.++++++||.+. +.++| +|+-+. | ..+.|.-++++.|+..+ |.. ...+.+.+..+++++.. .
T Consensus 83 ~A~~~~~fl~~~~~d~~gg~g~~~s~d~dg~~~~~~~~lyd~af~~~a~~~~~~atgd~-~~~~~A~~l~~~~~~~~~d~ 161 (402)
T 1fp3_A 83 AAKAGGEFLLRHARVAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMAMNELWRVTAEA-RYQSEAVDMMDQIVHWVRED 161 (402)
T ss_dssp HHHHHHHHHHHHTBSSTTSCCBCSEECTTSCEEECCSSSHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhccCcCCCCceEEEECCCCCccccccchHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHhccC
Confidence 899999999997 45554 776432 1 23567777877777643 322 12233445566666654 3
Q ss_pred CCCCC
Q 010631 398 PSGGW 402 (505)
Q Consensus 398 ~DGgW 402 (505)
+.|+|
T Consensus 162 ~~G~f 166 (402)
T 1fp3_A 162 PSGLG 166 (402)
T ss_dssp GGGGC
T ss_pred CCccc
Confidence 45665
No 77
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}
Probab=79.03 E-value=20 Score=38.27 Aligned_cols=169 Identities=17% Similarity=0.125 Sum_probs=90.8
Q ss_pred hHHHHHHHHHhhhhCCCCc------hhhhHHHHHHHHHHHHHhccccCCCcc----cCCCC-------------------
Q 010631 310 TSASIQALTSFKKLYPGHW------QEDVDHCIKRAVKFIEKIQELDGSWYG----SWGVC------------------- 360 (505)
Q Consensus 310 Ta~vl~aL~~~~~~~~~~~------~~~i~~~i~rav~~L~~~Q~~DG~W~g----~wg~~------------------- 360 (505)
|+.++-.|..+.+..+... .+++.+.++=+++||++.|.++|.++. .|+..
T Consensus 164 ~~~~~w~ll~~~~~~~~~~~~~~~~~~~lldE~rWg~D~llkm~~~~g~~y~qVgd~W~~d~~~R~~~~~~~~~~~~~~~ 243 (586)
T 3h7l_A 164 TPMVVWNILKGLSLLEGSEDIAAFTRTRLIEEALFGADFLVRMQNEKGFFYMTVFDKWSKDTAQREICAYETQLGHKFDD 243 (586)
T ss_dssp HHHHHHHHHHHHHHSTTSSSSCHHHHHHHHHHHHHHHHHHHHTBCTTSCBBCEEECTTCCCGGGCEEEEEETTTTEEESC
T ss_pred hhHHHHHHHHHHHHhhhhccCcccchHHHHHHHHHHHHHHHhcccCCCeEEEEecCCCCCCCCccccccccCCCCCCCcc
Confidence 4555555555554444321 245667888999999999999998763 24320
Q ss_pred ----ccchHHHHHHHHHHcCCCC---CC-----cHHHHHHHHHHHhccC---CCCCCCcCcccccccccccCCCCCCchh
Q 010631 361 ----FTYGTWFGVKGLVAAGMNY---SN-----SSSIRKACEFLLSKQR---PSGGWGESYLSCQKKVYSNLEGDRSHVV 425 (505)
Q Consensus 361 ----~~y~T~~al~aL~~~G~~~---~~-----~~~i~ra~~~L~~~Q~---~DGgWge~~~s~~~~~y~~~~~~~s~~~ 425 (505)
..-+++.++.||+++..-. .. -...+++.+|+.++.. .+|. ..| .+-+
T Consensus 244 y~~~~~~~agl~aAALA~Asrvf~d~~~~a~~~L~aA~~a~~fa~~~~~~y~~~g~----------~~~-------~De~ 306 (586)
T 3h7l_A 244 YQAGFRQGGGVAIAALAAASRLGVHGEYDQQKYRNAAENGYWHLKEHNTQYLNDGE----------ENI-------IDEY 306 (586)
T ss_dssp CBCCGGGTHHHHHHHHHHHTTSSSCSSSCHHHHHHHHHHHHHHHHHHHHHHSTTSC----------CCH-------HHHH
T ss_pred eecCCCCcHHHHHHHHHHHhcccCCCCcChHHHHHHHHHHHHHHHhcCccccCCCC----------ccc-------hhHH
Confidence 0123455677777766531 11 1334567888887642 1110 001 1112
Q ss_pred HHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCC--CC--CCCCcccceeccccccccCCchhhHHHHHHHHHHHHhh
Q 010631 426 NTAWAMLALIDAGQAETDPTPLHRAARYLINSQMEN--GD--YPQEEIMGVFNRNCMISYSAYRNIFPIWALGEYRCRVL 501 (505)
Q Consensus 426 ~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~--G~--w~~~~~~g~f~~~~~~~y~~y~~~fpl~AL~~y~~~~~ 501 (505)
.-.||.+-|-.+.....-.+.+..-.+.|..++..+ |+ |..... -++. -||.=-.-.++.||.+|.+...
T Consensus 307 ~~~WAA~eLy~ATgd~~YL~~a~~~a~~l~~~~~~~~~~g~~w~~~d~---~~r~---~~d~a~~gl~~iaLl~l~~~~~ 380 (586)
T 3h7l_A 307 CALLASVELFKATKETRYLEESRLWAQRLVARQMSDEQIQHFWSANQD---GSRP---YFHAAEAGLPTIALCEYLAIED 380 (586)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTEECCSSCSSEEBSSSS---SSSB---CCCTTTTTHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccCCccCCCcCCCccc---CCcc---cccccccHHHHHHHHHhhhhcC
Confidence 337888888776432111122333344566665443 22 332211 1222 2333357789999999987653
No 78
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=75.26 E-value=3.8 Score=44.17 Aligned_cols=123 Identities=12% Similarity=0.059 Sum_probs=67.2
Q ss_pred chhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHh---cc---cCCccee--------eeecccccchhcccCcc
Q 010631 229 SDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFS---LQ---NADGGFA--------TYELMRSYPWLEVLNPA 294 (505)
Q Consensus 229 ~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~---~Q---n~dGgw~--------~~~~~~~~~~l~~~~~~ 294 (505)
+=|.+++++||+..... .| ..+..++..+||.. .| ++||+|. .|..+... + +
T Consensus 52 ~RDaa~t~~aL~~~~~~----~G---~~~~a~~~~~~l~~~~~lQ~~y~~~G~~~~~~~l~E~~~~ldG~~-~----~-- 117 (599)
T 2vn4_A 52 TRDSALVFKNLIDRFTE----TY---DAGLQRRIEQYITAQVTLQGLSNPSGSLADGSGLGEPKFELTLKP-F----T-- 117 (599)
T ss_dssp HHHHHHHHHHHHHHHHH----SB---CHHHHHHHHHHHHHHHHHHHCCBTTBCSTTSGGGGCCEECTTSCB-C----C--
T ss_pred hhhHHHHHHHHHHHHHh----CC---CHHHHHHHHHHHhcccceeeeeCCCCCcccccCcCceEEecCCcc-c----c--
Confidence 35688888887732100 11 24567778899974 77 8999983 22222110 0 0
Q ss_pred cccCCcccccCCCcc-----hHHHHHHHHHhhhhCCCCc---hhhhHHHHHHHHHHHHHhccc--cCCCcccCCCCccch
Q 010631 295 ETFGDIVIDYPCVEC-----TSASIQALTSFKKLYPGHW---QEDVDHCIKRAVKFIEKIQEL--DGSWYGSWGVCFTYG 364 (505)
Q Consensus 295 e~f~~~~~d~~~~~~-----Ta~vl~aL~~~~~~~~~~~---~~~i~~~i~rav~~L~~~Q~~--DG~W~g~wg~~~~y~ 364 (505)
..+++ +.-|. ++.++.++. +... ... ...+-+.|+++++|+.+..+. .|-|..+-| .++|.
T Consensus 118 ~~w~~-----~Q~D~~glr~~~~~~~~~~-~~~~--g~~~~~~~~~w~~v~~~l~~v~~~w~~~d~dlWEer~g-~~~~T 188 (599)
T 2vn4_A 118 GNWGR-----PQRDGPALRAIALIGYSKW-LINN--NYQSTVSNVIWPIVRNDLNYVAQYWNQTGFDLWEEVNG-SSFFT 188 (599)
T ss_dssp SCCSC-----CCTHHHHHHHHHHHHHHHH-HHHT--TCHHHHHHHTHHHHHHHHHHHHHHTTSCEECTTSCCEE-EEHHH
T ss_pred CcCCC-----eeccccchhHHHHHHHHHH-HHHh--CCcccccHHHHHHHHHHHHHHHHhCCCCCCCeeeecCC-cchHH
Confidence 01222 23344 444444333 2211 111 112457899999999997653 377776644 36776
Q ss_pred HHHHHHHHHH
Q 010631 365 TWFGVKGLVA 374 (505)
Q Consensus 365 T~~al~aL~~ 374 (505)
.+.+..||..
T Consensus 189 ~~~~~~aL~~ 198 (599)
T 2vn4_A 189 VANQHRALVE 198 (599)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 79
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=75.00 E-value=19 Score=36.61 Aligned_cols=129 Identities=13% Similarity=0.078 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCchhhhHHHH
Q 010631 257 KRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCI 336 (505)
Q Consensus 257 ~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i 336 (505)
+.+..-+.|-.....+. ||...+.+.. . ++ . ..-.+..+++.|.+++.... .. .++..+.+
T Consensus 15 ~~~~~ll~f~~~~~d~~-GF~~ld~~g~-~----~~---~------~~k~~~~nar~i~~~a~a~~-~g---~~~~l~~A 75 (421)
T 2zbl_A 15 QETDRIFNFGKNAVVPT-GFGWLGNKGQ-I----KE---E------MGTHLWITARMLHVYSVAAS-MG---RPGAYDLV 75 (421)
T ss_dssp HHHHHHHHHHGGGEETT-EECCBCTTSC-B----CG---G------GCEEHHHHHHHHHHHHHHHH-TT---CTTHHHHH
T ss_pred HHHHHHHHHHHhCcCCC-CcceECCCCC-C----CC---C------chhhHHHHHHHHHHHHHHHH-cC---ChhHHHHH
Confidence 34555566666666666 6753332210 0 00 0 01224568889999988764 22 23455789
Q ss_pred HHHHHHHHHhccc-c-CCCcccC---C----CCccchHHHHHHHHHHc---CCCCCCcHHHHHHHHHHHhccC-C-CCCC
Q 010631 337 KRAVKFIEKIQEL-D-GSWYGSW---G----VCFTYGTWFGVKGLVAA---GMNYSNSSSIRKACEFLLSKQR-P-SGGW 402 (505)
Q Consensus 337 ~rav~~L~~~Q~~-D-G~W~g~w---g----~~~~y~T~~al~aL~~~---G~~~~~~~~i~ra~~~L~~~Q~-~-DGgW 402 (505)
+++++||.+.... + |+|+-+. | ..+.|.-++++.||... |.+ ...+.+++..+++.+.-. + +||+
T Consensus 76 ~~~~~fl~~~~~D~~~GG~~~s~d~dg~~~~~k~lyd~Af~i~al~~~~~tg~~-~~l~~a~~~~~~l~~~~~d~~~Ggf 154 (421)
T 2zbl_A 76 DHGIKAMNGALRDKKYGGWYACVNDQGVVDASKQGYQHFFALLGAASAVTTGHP-EARKLLDYTIEVIEKYFWSEEEQMC 154 (421)
T ss_dssp HHHHHHHTTTTBCTTTSSBCSEEETTEEEECCEEHHHHHHHHHHHHHHHTTTCT-THHHHHHHHHHHHHHHTEETTTTEE
T ss_pred HHHHHHHHHhccCcCCCeEEEEeCCCCCcCCchhHHHHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHHhccCCCCCe
Confidence 9999999987533 3 8887332 1 13557778888888763 322 334566678888887543 3 6776
Q ss_pred CcC
Q 010631 403 GES 405 (505)
Q Consensus 403 ge~ 405 (505)
-+.
T Consensus 155 ~~~ 157 (421)
T 2zbl_A 155 LES 157 (421)
T ss_dssp CCE
T ss_pred eee
Confidence 543
No 80
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=71.86 E-value=67 Score=31.87 Aligned_cols=267 Identities=12% Similarity=0.090 Sum_probs=127.1
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHHHhHHhhh
Q 010631 165 TAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSK 244 (505)
Q Consensus 165 Ta~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~ 244 (505)
-++.++.+..++ + ++..++-.+|....-. ++.-=.|+.. +.+.+ .+ .-+|.--....||+.+.+
T Consensus 65 qGygMl~av~~~--d--~~~Fd~l~~~t~~~l~-~~~L~sWr~~----~~~~~----~n---NAtdgDl~IA~ALl~A~~ 128 (350)
T 3ren_A 65 EGLMMLYSVNAN--N--KELFDEHFDIVKEMRL-KNGLISWRKE----GDENS----PS---SATIDELRIIKALLLANN 128 (350)
T ss_dssp HHHHHHHHHHTT--C--HHHHHHHHHHHHTTBC-TTSSBCSEEE----TTEEC----SC---EEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--C--HHHHHHHHHHHHHHhc-cCCceEEEEC----CCCCC----CC---CCcHHHHHHHHHHHHHHH
Confidence 344555555555 2 6789999999998876 3211123321 11111 11 235666677778877654
Q ss_pred ccccccCCccchHHHHHHHHHHHh-cccCCcceeee-ecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhh
Q 010631 245 LSSAIVGEPIETKRLYDSVNVIFS-LQNADGGFATY-ELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKK 322 (505)
Q Consensus 245 ~~~~~~g~~~~~~~i~~Av~~Ll~-~Qn~dGgw~~~-~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~ 322 (505)
.=. .+-.....++-+.=|++ +.+ +|....+ +.... ...+++|+.. +.+|..+..
T Consensus 129 ~W~----~~~Y~~~A~~I~~~i~~~~~~-~g~l~~~~d~~~~--------------~~~ln~SY~~-----~~a~~~f~~ 184 (350)
T 3ren_A 129 RWN----SFYYKFYAINIANSLLKHAEE-NETLVDYIDNYGK--------------GNTTTLCYLD-----LPTMKLLSQ 184 (350)
T ss_dssp HHC----CHHHHHHHHHHHHHHHHHHEE-TTEECSEECSSCB--------------CSEEEGGGCC-----HHHHHHHHH
T ss_pred HcC----cHHHHHHHHHHHHHHHHHccc-cCcccCCCCccCC--------------CCEeehHhcC-----HHHHHHHHH
Confidence 311 11122222222222232 232 3322111 11100 1234555443 334444433
Q ss_pred hCCCCchhhhHHHHHHHHHHHHHhccccC-CCccc---C-CCCccc-------hHHHHHHHHHHcCCCCCCcHHHHHHHH
Q 010631 323 LYPGHWQEDVDHCIKRAVKFIEKIQELDG-SWYGS---W-GVCFTY-------GTWFGVKGLVAAGMNYSNSSSIRKACE 390 (505)
Q Consensus 323 ~~~~~~~~~i~~~i~rav~~L~~~Q~~DG-~W~g~---w-g~~~~y-------~T~~al~aL~~~G~~~~~~~~i~ra~~ 390 (505)
..+ .-...++++++.|.+..-+|+ .++.. + ...|.| ....+..-|...|.. .+. ..+
T Consensus 185 ~~~-----~W~~l~~~g~~lL~~g~p~D~~~l~~~~~~~~~~~y~yd~~vn~iDalrv~L~La~~g~~---~~~---~~~ 253 (350)
T 3ren_A 185 VDK-----KWEGIYEKSNSIIENGKISEEVPLYRKVFYEETQKYDEEENVDFLLSTIVILNRIEAGEN---EES---SIK 253 (350)
T ss_dssp HCT-----HHHHHHHHHHHHHHTTBCCSSSCCBCSEEETTTTEECCCSEEEHHHHHHHHHHHHHTTCC---CHH---HHH
T ss_pred hcc-----hHHHHHHHHHHHHHhCCCCcccccCCcccccCCCCcccccccchHHHHHHHHHHHhcCCC---cHH---HHH
Confidence 211 124678999999998666663 22211 1 123555 234444446666764 332 367
Q ss_pred HHHhccCCCC---CCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCCCCCC
Q 010631 391 FLLSKQRPSG---GWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQE 467 (505)
Q Consensus 391 ~L~~~Q~~DG---gWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~w~~~ 467 (505)
||.+.-..+| +|-.- .+.. + .....+.-.+|+.+|...... |.+-.+.+++-|.+-|..|+..+.-
T Consensus 254 fl~~~~~~~g~l~~~y~~----~tg~--~---~~~~eS~g~yAiaal~~~~~~--D~~la~~~~~rm~~fq~~d~~s~yy 322 (350)
T 3ren_A 254 WIKEKFKKDGFLVATYNG----KNGD--A---TSQIESPSIYSNVALIANYIG--DKELFNKAIDKLKYYQIKNKDSVLY 322 (350)
T ss_dssp HHHHHHHHHSSCCSEEET----TTCC--B---CCCCCCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHSCCCTTSTTT
T ss_pred HHHHHHhhcCCcceEEEC----CCCC--c---CCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcccCCCCcccC
Confidence 7774221133 33210 0000 0 011123344555555544322 3455888999999988888654432
Q ss_pred cccceeccccccccCCchhhHHHHHHHHH
Q 010631 468 EIMGVFNRNCMISYSAYRNIFPIWALGEY 496 (505)
Q Consensus 468 ~~~g~f~~~~~~~y~~y~~~fpl~AL~~y 496 (505)
|.|-..-=-.-|+|.+..||.|.-.|
T Consensus 323 ---GG~~~~~~~~~~sfdNL~~LlA~~~~ 348 (350)
T 3ren_A 323 ---GGFGDEKTNSVYSFDNLNALLAFQKY 348 (350)
T ss_dssp ---TSCSBTTTTBCBHHHHHHHHHHHHTC
T ss_pred ---CcccccCCCceeeeccHHHHHHHHhh
Confidence 22211001124678899999998765
No 81
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*
Probab=71.66 E-value=96 Score=34.51 Aligned_cols=85 Identities=16% Similarity=0.045 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCc-------
Q 010631 256 TKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHW------- 328 (505)
Q Consensus 256 ~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~------- 328 (505)
.+.+++.+..+.+.|.+||.....-. |..+ .+...+.+...|.+...+.++..+-+...+..
T Consensus 381 pe~ar~~il~~~~~Q~~dG~v~h~~~----------p~~~-~g~~~~~~~~~D~~lWl~~av~~Yi~~TGD~~~L~e~~p 449 (822)
T 3rrs_A 381 PERARERIIDIASTQFADGSAYHQYQ----------PLTK-RGNNDIGSGFNDDPLWLIAGTAAYIKETGDFSILDEPVP 449 (822)
T ss_dssp HHHHHHHHHHHHTTCCTTSCCCSEEE----------TTTT-EECTTTCSCBTTHHHHHHHHHHHHHHHHCCGGGGGSEEC
T ss_pred HHHHHHHHHHHHHhhcccCcccceec----------CcCC-CCccCCCCcccchHhHHHHHHHHHHHHHCCHHHHHhhhh
Confidence 46788889999999999999863210 0000 01111123346777777777776533211110
Q ss_pred -------hhhhHHHHHHHHHHHHHhccccC
Q 010631 329 -------QEDVDHCIKRAVKFIEKIQELDG 351 (505)
Q Consensus 329 -------~~~i~~~i~rav~~L~~~Q~~DG 351 (505)
...+-+.+.|+++|+.+...++|
T Consensus 450 ~~~~~~~~~tl~eh~~ra~~~~~~~~g~~G 479 (822)
T 3rrs_A 450 FDNEPGSEVPLFEHLTRSFEFTVTHRGPHG 479 (822)
T ss_dssp STTCTTCCEEHHHHHHHHHHHHHHSBCTTS
T ss_pred hhccccccccHHHHHHHHHHHHHhcCCCCC
Confidence 01234578999999998766655
No 82
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}
Probab=69.98 E-value=43 Score=33.18 Aligned_cols=165 Identities=16% Similarity=0.059 Sum_probs=92.4
Q ss_pred ChhHHHHHHHHHHhcCC---CcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHH
Q 010631 161 QLWDTAFAVQAIISTNL---VEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLK 237 (505)
Q Consensus 161 ~vwDTa~a~~AL~~ag~---~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~ 237 (505)
.-|=+|.++.+|.++.. .+++.+.+.++++++..... |.|. + . ..||-+....
T Consensus 44 ~yWW~a~~~~~l~d~~~~tgd~~y~~~a~~~~~~~~~~~~-----------------~~~~----~-~--~~DD~a~~~l 99 (349)
T 3k7x_A 44 NYWWLAHLVEVRLDAYLRTKKQADLEVAEKTYLHNKNRNG-----------------GTLI----H-D--FYDDMLWNAL 99 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTT-----------------SSSC----C-S--BHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC-----------------CCCC----c-c--CccHHHHHHH
Confidence 33546666777776421 23467788888888876421 2221 1 1 2588888777
Q ss_pred HhHHhhhccccccCCccchHHHHHHHHHH-HhcccC--CcceeeeecccccchhcccCcccccCCcccccCCCcchHHHH
Q 010631 238 ASLLLSKLSSAIVGEPIETKRLYDSVNVI-FSLQNA--DGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASI 314 (505)
Q Consensus 238 aL~~~~~~~~~~~g~~~~~~~i~~Av~~L-l~~Qn~--dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl 314 (505)
+++.+.+.. +.+..-+...+..+++ .+.-++ .||+. +.... + ++..+-..+..+
T Consensus 100 a~~~aye~t----~~~~yL~~A~~l~~~l~~~~wd~~~gGGi~-W~~~~-----------~-------~~knaisN~~~~ 156 (349)
T 3k7x_A 100 AAYRLYKAT----GKSIYLEDAQLVWQDLVDTGWNDIMGGGFA-WRRPQ-----------M-------YYKNTPVNAPFI 156 (349)
T ss_dssp HHHHHHHHH----CCHHHHHHHHHHHHHHHHHTBCSGGGSCBE-EETTE-----------E-------EEEEHHHHHHHH
T ss_pred HHHHHHHHH----CCchHHHHHHHHHHHHHHhCCCCCCCCceE-ecCCC-----------c-------cccchhhHHHHH
Confidence 777665432 2332334445556676 443333 47763 32211 0 111122456666
Q ss_pred HHHHHhhhhCCCCchhhhHHHHHHHHHHHHHhc-cccCCCccc----C-C-----CCccchHHHHHHHHHHc
Q 010631 315 QALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQ-ELDGSWYGS----W-G-----VCFTYGTWFGVKGLVAA 375 (505)
Q Consensus 315 ~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q-~~DG~W~g~----w-g-----~~~~y~T~~al~aL~~~ 375 (505)
.+++.+.+...+ ++..+..++..+|+.+.. +++|..+.. . | ..++|+.+++|.|+...
T Consensus 157 ~~la~l~~~tgd---~~Yl~~A~~~~~w~~~~l~d~~g~v~Dg~~~~~~g~~~~~~~~tYnqg~~l~g~~~L 225 (349)
T 3k7x_A 157 ILSCWLYNELNE---TKYLEWAMKTYEWQTKVLVREDGFVEDGINRLEDGTIDYEWKFTYNQGVYIGANLEL 225 (349)
T ss_dssp HHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHBCTTSCBCCEECTTSSSCBCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC---HHHHHHHHHHHHHHHhcCCCCCCeEecCCccCCCCccCCcCeeeHHHHHHHHHHHHH
Confidence 667666554322 345577889999998754 455555421 1 1 24788999999998764
No 83
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A
Probab=66.15 E-value=1.2e+02 Score=30.90 Aligned_cols=90 Identities=9% Similarity=0.118 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHhcccCCcceeee--ecccccchhcccCcccc-cCCc--cc--ccCCCcchHHHHHHHHHhhhhCCCCc
Q 010631 256 TKRLYDSVNVIFSLQNADGGFATY--ELMRSYPWLEVLNPAET-FGDI--VI--DYPCVECTSASIQALTSFKKLYPGHW 328 (505)
Q Consensus 256 ~~~i~~Av~~Ll~~Qn~dGgw~~~--~~~~~~~~l~~~~~~e~-f~~~--~~--d~~~~~~Ta~vl~aL~~~~~~~~~~~ 328 (505)
.+.++-++|||++||.++|++-.- +.+.++.+.. .|.+. ..+. .+ ..+..+.|+.+..+|+.......+..
T Consensus 93 ldeikwg~D~llk~~~~~g~~y~qVgd~~~Dh~~w~--~Pe~~~~~R~~y~~~~~~pgs~~a~~~AAalA~as~vfk~~D 170 (433)
T 1ks8_A 93 RKAVKWATDYFIKAHTSQNEFYGQVGQGDADHAFWG--RPEDMTMARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVD 170 (433)
T ss_dssp HHHHHHHHHHHHHHCCBTTBEEEEESCHHHHHTCCS--CGGGCCSCCCEEEECSSSCCHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEeCCCCcCCcccC--CHhhCCCCCceeeccCCCCccHHHHHHHHHHHHHHHhccccC
Confidence 466788899999999999876421 1111121211 11111 1111 12 23445677777777777665543221
Q ss_pred ---hhhhHHHHHHHHHHHHHhc
Q 010631 329 ---QEDVDHCIKRAVKFIEKIQ 347 (505)
Q Consensus 329 ---~~~i~~~i~rav~~L~~~Q 347 (505)
.++.-...+++-+|..+.+
T Consensus 171 ~~yA~~~L~~A~~~~~fa~~~~ 192 (433)
T 1ks8_A 171 GTYSNNLLTHARQLFDFANNYR 192 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHCC
Confidence 1233345567777777654
No 84
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*
Probab=64.87 E-value=1.8e+02 Score=32.37 Aligned_cols=102 Identities=15% Similarity=0.124 Sum_probs=58.6
Q ss_pred ChhHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHHHhH
Q 010631 161 QLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASL 240 (505)
Q Consensus 161 ~vwDTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL~ 240 (505)
-..|++..++||.-.. .+..++.+..+.+.|..+ |+....+... .+.+- .......+|++..-+.++.
T Consensus 365 G~RD~~qd~~~~~~~~-----pe~ar~~il~~~~~Q~~d---G~v~h~~~p~--~~~g~--~~~~~~~~D~~lWl~~av~ 432 (822)
T 3rrs_A 365 GFRDSNQDLLGFVHLI-----PERARERIIDIASTQFAD---GSAYHQYQPL--TKRGN--NDIGSGFNDDPLWLIAGTA 432 (822)
T ss_dssp EHHHHHHHHHHHTTTC-----HHHHHHHHHHHHTTCCTT---SCCCSEEETT--TTEEC--TTTCSCBTTHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcC-----HHHHHHHHHHHHHhhccc---CcccceecCc--CCCCc--cCCCCcccchHhHHHHHHH
Confidence 3589999999997542 457888888999999987 6654333211 11111 1111235788887777765
Q ss_pred Hhhhcc--ccccCCcc-----------chHHHHHHHHHHHhcccCCc
Q 010631 241 LLSKLS--SAIVGEPI-----------ETKRLYDSVNVIFSLQNADG 274 (505)
Q Consensus 241 ~~~~~~--~~~~g~~~-----------~~~~i~~Av~~Ll~~Qn~dG 274 (505)
..-+.. -.+..+.+ --+.+.+|++|++....++|
T Consensus 433 ~Yi~~TGD~~~L~e~~p~~~~~~~~~tl~eh~~ra~~~~~~~~g~~G 479 (822)
T 3rrs_A 433 AYIKETGDFSILDEPVPFDNEPGSEVPLFEHLTRSFEFTVTHRGPHG 479 (822)
T ss_dssp HHHHHHCCGGGGGSEECSTTCTTCCEEHHHHHHHHHHHHHHSBCTTS
T ss_pred HHHHHHCCHHHHHhhhhhhccccccccHHHHHHHHHHHHHhcCCCCC
Confidence 321110 00100000 13589999999997555543
No 85
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase; 1.90A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2
Probab=64.02 E-value=1.2e+02 Score=32.76 Aligned_cols=89 Identities=12% Similarity=0.146 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHhcccCC--cceeeeecccccchhcccCcccc-cCCcccccCCCcchHHHHHHHHHhhhhCCCCc---h
Q 010631 256 TKRLYDSVNVIFSLQNAD--GGFATYELMRSYPWLEVLNPAET-FGDIVIDYPCVECTSASIQALTSFKKLYPGHW---Q 329 (505)
Q Consensus 256 ~~~i~~Av~~Ll~~Qn~d--Ggw~~~~~~~~~~~l~~~~~~e~-f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~---~ 329 (505)
.+.++-+.|||++||.++ |++-. .. .+..|-....|.+. -.+..+. +..+.|+.+..+|+.....+.+.. .
T Consensus 235 ldeikwg~Dyllk~q~~~~~g~~y~-~v-gd~~~~~~~~Pe~~~~~R~~~~-~~s~~a~e~AAAlAaAS~vfk~~D~~yA 311 (639)
T 1clc_A 235 LDELKYEIDWILTMQYPDGSGRVAH-KV-STRNFGGFIMPENEHDERFFVP-WSSAATADFVAMTAMAARIFRPYDPQYA 311 (639)
T ss_dssp HHHHHHHHHHHHTTBCTTSSCCBEE-EE-ECSSCCCSCCGGGCCSCCEEEE-ECHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCeEEE-Ee-cCCCCCCCCCchhcCCCceEec-CCcHHHHHHHHHHHHHHHhccccCHHHH
Confidence 366788899999999975 55421 11 11112111222221 1111222 235666766677776654432221 1
Q ss_pred hhhHHHHHHHHHHHHHhc
Q 010631 330 EDVDHCIKRAVKFIEKIQ 347 (505)
Q Consensus 330 ~~i~~~i~rav~~L~~~Q 347 (505)
++.-...+++-+|..+..
T Consensus 312 ~~~L~~Ak~l~~fA~~~~ 329 (639)
T 1clc_A 312 EKCINAAKVSYEFLKNNP 329 (639)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 233345667777877755
No 86
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A*
Probab=63.28 E-value=8.5 Score=40.11 Aligned_cols=121 Identities=14% Similarity=0.072 Sum_probs=65.3
Q ss_pred chhhHHHHHHhH---HhhhccccccCCccchHHHHHHHHHHHh---cc---cCCccee-------eeecccccchhcccC
Q 010631 229 SDCTSEGLKASL---LLSKLSSAIVGEPIETKRLYDSVNVIFS---LQ---NADGGFA-------TYELMRSYPWLEVLN 292 (505)
Q Consensus 229 ~d~Ta~al~aL~---~~~~~~~~~~g~~~~~~~i~~Av~~Ll~---~Q---n~dGgw~-------~~~~~~~~~~l~~~~ 292 (505)
+=|.++++.||+ .+. . .+..++..+||.. .| +++|.|. -|..+....
T Consensus 53 ~RDaa~t~~aL~~~~~~G--------~---~~~a~~~~~~l~~~~~lQ~~~~~~G~l~~~glgE~~y~vdG~~~------ 115 (472)
T 1gai_A 53 TRDSGLVIKTLVDLFRNG--------D---TDLLSTIEHYISSQAIIQGVSNPSGDLSSGGLGEPKFNVDETAY------ 115 (472)
T ss_dssp HHHHHHHHHHHHHHHHTT--------C---GGGHHHHHHHHHHHHHHHHCCBTTBCTTTTGGGCCEECTTSCBC------
T ss_pred hhhHHHHHHHHHHHHhcC--------C---HHHHHHHHHHHHHHHHhhcccCCCCccccCCCCCceEccCCCcc------
Confidence 357888888886 322 1 2345666777766 44 7888884 243332210
Q ss_pred cccccCCcccccCCCcc-----hHHHHHHHHHhhhhCCC-CchhhhHHHHHHHHHHHHHhcc--ccCCCcccCCCCccch
Q 010631 293 PAETFGDIVIDYPCVEC-----TSASIQALTSFKKLYPG-HWQEDVDHCIKRAVKFIEKIQE--LDGSWYGSWGVCFTYG 364 (505)
Q Consensus 293 ~~e~f~~~~~d~~~~~~-----Ta~vl~aL~~~~~~~~~-~~~~~i~~~i~rav~~L~~~Q~--~DG~W~g~wg~~~~y~ 364 (505)
...++ .+-.|. ++.++.++. +...... .-.+.+-+.|++.++||.+.-+ .-|-|..+-|. ++|.
T Consensus 116 -~~~w~-----~~Q~D~~g~ra~~~~~~~~~-l~~~g~~~~~~~~~w~~i~~~l~~v~~~w~~pd~dlWEer~g~-~~~T 187 (472)
T 1gai_A 116 -TGSWG-----RPQRDGPALRATAMIGFGQW-LLDNGYTSAATEIVWPLVRNDLSYVAQYWNQTGYDLWEEVNGS-SFFT 187 (472)
T ss_dssp -CSCCS-----CCCTHHHHHHHHHHHHHHHH-HHHTTCHHHHHHTHHHHHHHHHHHHHHHTTSCEECTTSCCEEE-EHHH
T ss_pred -CCcCC-----CccccccchhHHHHHHHHHH-HHHcCCccccchhHHHHHHHHHHHHHHhcCCCCCCCCcccCCC-CHHH
Confidence 00122 123455 455554443 2221110 0011244679999999988654 33778766444 7777
Q ss_pred HHHHHHHHHH
Q 010631 365 TWFGVKGLVA 374 (505)
Q Consensus 365 T~~al~aL~~ 374 (505)
.+.+..||..
T Consensus 188 ~~~~~~AL~~ 197 (472)
T 1gai_A 188 IAVQHRALVE 197 (472)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 87
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=60.85 E-value=11 Score=27.54 Aligned_cols=30 Identities=20% Similarity=0.356 Sum_probs=23.3
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCC
Q 010631 365 TWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSG 400 (505)
Q Consensus 365 T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DG 400 (505)
.-.|..||.+.|.. |+||++||-++..+..
T Consensus 33 ~~qA~kALKat~~N------vErAaDWLFSH~D~~~ 62 (63)
T 1wgn_A 33 YECVLRAMKKKGEN------IEQILDYLFAHSGPSS 62 (63)
T ss_dssp HHHHHHHHHHHCSC------HHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHcCCC------HHHHHHHHHhCCCCCC
Confidence 34678899887653 7899999999877643
No 88
>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*
Probab=58.52 E-value=61 Score=35.75 Aligned_cols=21 Identities=10% Similarity=-0.121 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHhcccCCcce
Q 010631 256 TKRLYDSVNVIFSLQNADGGF 276 (505)
Q Consensus 256 ~~~i~~Av~~Ll~~Qn~dGgw 276 (505)
.+..++.+.++.+.|.+||+.
T Consensus 363 p~~ar~~l~~~~~~Q~~~G~~ 383 (807)
T 1v7w_A 363 PEMTRKRIVDLLRGQVKAGYG 383 (807)
T ss_dssp HHHHHHHHHHHHHTBCTTSCB
T ss_pred HHHHHHHHHHHHhccccCCCc
Confidence 466788899999999999973
No 89
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=57.58 E-value=1.3e+02 Score=33.48 Aligned_cols=85 Identities=14% Similarity=0.042 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCc--h----
Q 010631 256 TKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHW--Q---- 329 (505)
Q Consensus 256 ~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~--~---- 329 (505)
.+.+++.+..+.+.|.+||.....- .|....+...+.+...|.+...+.++..+-+...+.. .
T Consensus 374 p~~~r~~il~~~~~Q~~dG~~~h~~-----------~p~~~~g~~~~~~~~~D~~lW~i~av~~Y~~~TGD~~~L~e~~p 442 (811)
T 3qde_A 374 PERARERLLDLAATQLEDGSAYHQY-----------QPLTKKGNNEIGSNFNDDPLWLILATAAYIKETGDYSILKEQVP 442 (811)
T ss_dssp HHHHHHHHHHHHTTBCTTSCBCSEE-----------CTTTCCEECTTCCCBTTHHHHHHHHHHHHHHHHCCGGGGGSEEE
T ss_pred HHHHHHHHHHHHhhcccCCCcccee-----------cCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHCCHHHHHhhhh
Confidence 4678888999999999999985321 0100001111113346777777777776533221110 0
Q ss_pred --------hhhHHHHHHHHHHHHHhccccC
Q 010631 330 --------EDVDHCIKRAVKFIEKIQELDG 351 (505)
Q Consensus 330 --------~~i~~~i~rav~~L~~~Q~~DG 351 (505)
..+-+.+.|+++|+.+...++|
T Consensus 443 ~~~~~~~~~tl~eh~~ra~~~~~~~~g~~G 472 (811)
T 3qde_A 443 FNNDPSKADTMFEHLTRSFYHVVNNLGPHG 472 (811)
T ss_dssp ETTEEEEEEEHHHHHHHHHHHHHTCBCTTS
T ss_pred hhcCCcccccHHHHHHHHHHHHHhcCCCCC
Confidence 1234578999999997666655
No 90
>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8
Probab=55.30 E-value=2e+02 Score=29.85 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhccccC---CCcccCCCCcc-chHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCcCcccc
Q 010631 334 HCIKRAVKFIEKIQELDG---SWYGSWGVCFT-YGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSC 409 (505)
Q Consensus 334 ~~i~rav~~L~~~Q~~DG---~W~g~wg~~~~-y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DGgWge~~~s~ 409 (505)
+..++-.+++++..+|-. .-....|...+ ++..|-+..+..+ ....+.+.+++.++||++.....|=..|+....
T Consensus 366 piy~nTr~~IlS~~NPyy~~G~~~~GIGspH~~~~~~Wpmsll~~a-lts~d~~E~~~~L~~l~~t~~gtGLmhEs~d~~ 444 (489)
T 2p0v_A 366 PIYQNTRKFVWSEDNPYFFKGSAGEGIGGPHIGYDMIWPMSIMMKA-FTSQNDAEIKTCIKMLMDTDAGTGFMHESFNKN 444 (489)
T ss_dssp HHHHHHHHHHTSTTSTTEEECSSCEEECCTTTCTTEECHHHHHHHH-HTCCCHHHHHHHHHHHHHTSTTSCSCCSEEETT
T ss_pred HHHHHHHHHHHhhcCCcccccccccCCCCCCCCCCchHHHHHHHHH-HhcCCHHHHHHHHHHHHhhCCCCCeeeeeECCC
Confidence 678999999999887531 11111122111 1323322222221 221467888999999999887778777876543
No 91
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=53.61 E-value=2.6e+02 Score=30.85 Aligned_cols=101 Identities=13% Similarity=0.087 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHHHhHH
Q 010631 162 LWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLL 241 (505)
Q Consensus 162 vwDTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL~~ 241 (505)
..|+...++||.-+. .+..++.+..+.+.|..+ |+....+... .+.+ ........+|++..-+.++..
T Consensus 359 ~RD~~qd~~~~~~~~-----p~~~r~~il~~~~~Q~~d---G~~~h~~~p~--~~~g--~~~~~~~~~D~~lW~i~av~~ 426 (811)
T 3qde_A 359 FRDSNQDLLGFVHQI-----PERARERLLDLAATQLED---GSAYHQYQPL--TKKG--NNEIGSNFNDDPLWLILATAA 426 (811)
T ss_dssp HHHHHHHHHTTTTTC-----HHHHHHHHHHHHTTBCTT---SCBCSEECTT--TCCE--ECTTCCCBTTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcC-----HHHHHHHHHHHHhhcccC---CCccceecCC--CCCC--CCCCCCCcccchhHHHHHHHH
Confidence 489999888886542 457888888999999987 7754333211 1111 111112357888877777653
Q ss_pred hhhcc--ccccCCcc-----------chHHHHHHHHHHHhcccCCc
Q 010631 242 LSKLS--SAIVGEPI-----------ETKRLYDSVNVIFSLQNADG 274 (505)
Q Consensus 242 ~~~~~--~~~~g~~~-----------~~~~i~~Av~~Ll~~Qn~dG 274 (505)
.-+.. -.+..+.+ --+.+.++++|+++...++|
T Consensus 427 Y~~~TGD~~~L~e~~p~~~~~~~~~tl~eh~~ra~~~~~~~~g~~G 472 (811)
T 3qde_A 427 YIKETGDYSILKEQVPFNNDPSKADTMFEHLTRSFYHVVNNLGPHG 472 (811)
T ss_dssp HHHHHCCGGGGGSEEEETTEEEEEEEHHHHHHHHHHHHHTCBCTTS
T ss_pred HHHHHCCHHHHHhhhhhhcCCcccccHHHHHHHHHHHHHhcCCCCC
Confidence 21110 00110100 13589999999997555553
No 92
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=52.18 E-value=15 Score=27.41 Aligned_cols=29 Identities=28% Similarity=0.148 Sum_probs=22.3
Q ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCC
Q 010631 366 WFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSG 400 (505)
Q Consensus 366 ~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DG 400 (505)
-..+.||.+.+-+ |++|++||++.+..+|
T Consensus 35 ~an~~AL~at~Gn------ve~Ave~L~~~~~~~~ 63 (67)
T 2dna_A 35 NANLQALIATDGD------TNAAIYKLKSSQGFSG 63 (67)
T ss_dssp HHHHHHHHHTTSC------HHHHHHHHHHCCSSSC
T ss_pred HHHHHHHHHcCCC------HHHHHHHHHhCCCccC
Confidence 3457889887643 7899999999876554
No 93
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}
Probab=51.95 E-value=28 Score=34.49 Aligned_cols=161 Identities=11% Similarity=-0.008 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHHhc-CC--CcchHHHHHHHHHHH-HhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHH
Q 010631 162 LWDTAFAVQAIIST-NL--VEEYGATLKKAHKYI-KDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLK 237 (505)
Q Consensus 162 vwDTa~a~~AL~~a-g~--~~~~~~~l~~A~~~L-~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~ 237 (505)
..|-++.++|+.++ .+ .+++.+..++..++| ...-. +. ..||..+......|..+-..+..+.
T Consensus 91 ~DD~a~~~la~~~aye~t~~~~yL~~A~~l~~~l~~~~wd-~~------------~gGGi~W~~~~~~~knaisN~~~~~ 157 (349)
T 3k7x_A 91 YDDMLWNALAAYRLYKATGKSIYLEDAQLVWQDLVDTGWN-DI------------MGGGFAWRRPQMYYKNTPVNAPFII 157 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTBC-SG------------GGSCBEEETTEEEEEEHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHhCCC-CC------------CCCceEecCCCccccchhhHHHHHH
Confidence 57899877777764 11 223344455566666 33322 11 1255544332112222334555555
Q ss_pred HhHHhhhccccccCCccchHHHHHHHHHHHh-cccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHH
Q 010631 238 ASLLLSKLSSAIVGEPIETKRLYDSVNVIFS-LQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQA 316 (505)
Q Consensus 238 aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~-~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~a 316 (505)
++..+.+. .|.+...+...+..+|+.+ +.+++|.+ ++..... . -+........+...+.+|.+
T Consensus 158 ~la~l~~~----tgd~~Yl~~A~~~~~w~~~~l~d~~g~v--~Dg~~~~-~---------~g~~~~~~~~tYnqg~~l~g 221 (349)
T 3k7x_A 158 LSCWLYNE----LNETKYLEWAMKTYEWQTKVLVREDGFV--EDGINRL-E---------DGTIDYEWKFTYNQGVYIGA 221 (349)
T ss_dssp HHHHHHHH----HCCHHHHHHHHHHHHHHHHHHBCTTSCB--CCEECTT-S---------SSCBCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHH----hCCHHHHHHHHHHHHHHHhcCCCCCCeE--ecCCccC-C---------CCccCCcCeeeHHHHHHHHH
Confidence 55555432 2344456777888999875 45566554 3321100 0 00000012345678889999
Q ss_pred HHHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCc
Q 010631 317 LTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWY 354 (505)
Q Consensus 317 L~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~ 354 (505)
+..+-+...+ ++..+.+.+.++.+.+..-++|-.+
T Consensus 222 ~~~LY~~T~d---~~yl~~a~~l~~~~~~~f~~~gi~~ 256 (349)
T 3k7x_A 222 NLELYRITKE---AIYLDTANKTAAISLKELTEDGIFK 256 (349)
T ss_dssp HHHHHHHHCC---HHHHHHHHHHHHHHHHHHEETTEEC
T ss_pred HHHHHHhhCc---HHHHHHHHHHHHHHHHHhccCCccc
Confidence 9887654322 2333455566666666555666543
No 94
>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*
Probab=50.44 E-value=1.6e+02 Score=32.25 Aligned_cols=32 Identities=19% Similarity=0.015 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCC
Q 010631 163 WDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLE 199 (505)
Q Consensus 163 wDTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~ 199 (505)
.|+..++++|. .+. .+..++.+.++.+.|..+
T Consensus 349 RD~~~~~~~l~-~~~----p~~ar~~l~~~~~~Q~~~ 380 (807)
T 1v7w_A 349 RDTAQDAISVP-HAN----PEMTRKRIVDLLRGQVKA 380 (807)
T ss_dssp HHHHHHTTSCT-TTC----HHHHHHHHHHHHHTBCTT
T ss_pred hHHhHHHHHHh-hcC----HHHHHHHHHHHHhccccC
Confidence 58888888766 433 456788889999999876
No 95
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A*
Probab=46.11 E-value=2.6e+02 Score=28.49 Aligned_cols=130 Identities=16% Similarity=0.064 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHhcccCCcceeeeec--ccccchhcccCcccc-cCC---cccc--cCCCcchHHHHHHHHHhhhhCCCC
Q 010631 256 TKRLYDSVNVIFSLQNADGGFATYEL--MRSYPWLEVLNPAET-FGD---IVID--YPCVECTSASIQALTSFKKLYPGH 327 (505)
Q Consensus 256 ~~~i~~Av~~Ll~~Qn~dGgw~~~~~--~~~~~~l~~~~~~e~-f~~---~~~d--~~~~~~Ta~vl~aL~~~~~~~~~~ 327 (505)
.+.++-++|||++|+..+|++-.--. ..++.+.. +|.+. ..+ ..++ .+..+.|+.+..+|+.....+.+.
T Consensus 95 ldeikwg~D~llk~~~~~~~~y~qVgd~~~Dh~~w~--~Pe~~~~~R~~~y~~~~~~p~sd~a~~~AAalAaas~vfk~~ 172 (441)
T 1ia6_A 95 LQQLKYFTDYFLKSHPNSTTFYYQVGEGNADHTYWG--APEEQTGQRPSLYKADPSSPASDILSETSAALTLMYLNYKNI 172 (441)
T ss_dssp HHHHHHHHHHHHHTCCSTTCEEEEESCHHHHTTCCS--CGGGCCSCCCCCEEEBTTBCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEeCCCCccccccC--ChhhCCCCCceeeEeCCCCCccHHHHHHHHHHHHHHHhcccc
Confidence 46788899999999887776632111 11111111 11110 001 1222 234466666667777655443222
Q ss_pred c---hhhhHHHHHHHHHHHHHhccc--cCCCcccCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Q 010631 328 W---QEDVDHCIKRAVKFIEKIQEL--DGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFL 392 (505)
Q Consensus 328 ~---~~~i~~~i~rav~~L~~~Q~~--DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L 392 (505)
. .++.-...+++-+|..+.... .+++|++.+.... -.|.|+.-..+.|. ....+.+.+++
T Consensus 173 D~~yA~~~L~~A~~~~~fa~~~~g~~~~~~~Y~ss~~~DE-~~WAAa~Ly~aTgd----~~Yl~~a~~~~ 237 (441)
T 1ia6_A 173 DSAYATKCLNAAKELYAMGKANQGVGNGQSFYQATSFGDD-LAWAATWLYTATND----STYITDAEQFI 237 (441)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCSCCCCTTTSCCCCSHHH-HHHHHHHHHHHHCC----THHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCchhH-HHHHHHHHHHHhCC----HHHHHHHHHHH
Confidence 1 123334556777787776432 2334433111001 13445555555553 34555555553
No 96
>2xfg_A Endoglucanase 1; hydrolase-sugar binding protein complex, family-9 glycoside hydrolase, hydrolase, sugar binding protein; 1.68A {Clostridium thermocellum}
Probab=40.64 E-value=3.2e+02 Score=28.03 Aligned_cols=90 Identities=10% Similarity=0.109 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHhcccCCcceeee--ecccccchhc---ccCcccccCC-cccc--cCCCcchHHHHHHHHHhhhhCCCC
Q 010631 256 TKRLYDSVNVIFSLQNADGGFATY--ELMRSYPWLE---VLNPAETFGD-IVID--YPCVECTSASIQALTSFKKLYPGH 327 (505)
Q Consensus 256 ~~~i~~Av~~Ll~~Qn~dGgw~~~--~~~~~~~~l~---~~~~~e~f~~-~~~d--~~~~~~Ta~vl~aL~~~~~~~~~~ 327 (505)
.+.++-+++||++|+..+|++-.- +.+.++.+.. ..+ .+ .. ..++ .+..++|+.+..+|+.....+.+.
T Consensus 115 ldeikwg~D~llk~~~~~~~~y~qVgd~~~Dh~~W~~pe~~~-~~--R~~y~i~~~~pgsd~a~e~AAAlAaAS~vfk~~ 191 (466)
T 2xfg_A 115 LNNIKWACDYFIKCHPEKDVYYYQVGDGHADHAWWGPAEVMP-ME--RPSYKVDRSSPGSTVVAETSAALAIASIIFKKV 191 (466)
T ss_dssp HHHHHHHHHHHHHTCSBTTEEEEEESCHHHHHTCCSCGGGCC-SC--CCEEEEESSSCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEeCCCCccccccCCcccCC-CC--CceeEecCCCCccHHHHHHHHHHHHHHHhcccc
Confidence 467888999999998777766321 1111111111 111 00 00 1122 244566777777777766554332
Q ss_pred ch---hhhHHHHHHHHHHHHHhcc
Q 010631 328 WQ---EDVDHCIKRAVKFIEKIQE 348 (505)
Q Consensus 328 ~~---~~i~~~i~rav~~L~~~Q~ 348 (505)
.. ++.-...+++-+|..+...
T Consensus 192 D~~yA~~~L~~Ak~l~~fA~~~~~ 215 (466)
T 2xfg_A 192 DGEYSKECLKHAKELFEFADTTKS 215 (466)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCC
Confidence 21 2333455677778877653
No 97
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=39.42 E-value=33 Score=25.54 Aligned_cols=27 Identities=30% Similarity=0.190 Sum_probs=20.0
Q ss_pred HHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCC
Q 010631 430 AMLALIDAGQAETDPTPLHRAARYLINSQMENG 462 (505)
Q Consensus 430 ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G 462 (505)
.+.||.+++-. |+++|+||.+.+...|
T Consensus 37 n~~AL~at~Gn------ve~Ave~L~~~~~~~~ 63 (67)
T 2dna_A 37 NLQALIATDGD------TNAAIYKLKSSQGFSG 63 (67)
T ss_dssp HHHHHHHTTSC------HHHHHHHHHHCCSSSC
T ss_pred HHHHHHHcCCC------HHHHHHHHHhCCCccC
Confidence 36667666532 8899999999877665
No 98
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=39.23 E-value=34 Score=24.98 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=20.6
Q ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCC
Q 010631 429 WAMLALIDAGQAETDPTPLHRAARYLINSQMEN 461 (505)
Q Consensus 429 ~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~ 461 (505)
.|..||.+.+.. |+|+++||-++..+.
T Consensus 35 qA~kALKat~~N------vErAaDWLFSH~D~~ 61 (63)
T 1wgn_A 35 CVLRAMKKKGEN------IEQILDYLFAHSGPS 61 (63)
T ss_dssp HHHHHHHHHCSC------HHHHHHHHHHHSCCC
T ss_pred HHHHHHHHcCCC------HHHHHHHHHhCCCCC
Confidence 567777776642 899999999987654
No 99
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=39.08 E-value=32 Score=26.11 Aligned_cols=29 Identities=34% Similarity=0.392 Sum_probs=22.2
Q ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCC
Q 010631 366 WFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSG 400 (505)
Q Consensus 366 ~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~DG 400 (505)
-.++.||.+.+-+ +++|++||.+.+.++-
T Consensus 45 ~~~~~AL~~t~Gn------ve~Ave~L~~~~~~~s 73 (74)
T 1vej_A 45 DANLQALVATDGD------IHAAIEMLLGASGPSS 73 (74)
T ss_dssp HHHHHHHHHTTSC------HHHHHHHHHTCCCCCC
T ss_pred HHHHHHHHHhCCC------HHHHHHHHHhCCCCCC
Confidence 3568889887653 7899999999876653
No 100
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=36.51 E-value=29 Score=25.46 Aligned_cols=28 Identities=32% Similarity=0.570 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCC
Q 010631 366 WFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRP 398 (505)
Q Consensus 366 ~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~ 398 (505)
-.+..||.+.+-. .+++|++||++++.+
T Consensus 34 ~~a~~AL~~t~~~-----nve~A~ewL~~~~~d 61 (64)
T 2cpw_A 34 ARAQKALASTGGR-----SVQTACDWLFSHSGP 61 (64)
T ss_dssp HHHHHHHHHTTTS-----CHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHcCCC-----CHHHHHHHHHhCCCC
Confidence 4566777776531 378999999998865
No 101
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=32.62 E-value=51 Score=24.88 Aligned_cols=29 Identities=31% Similarity=0.265 Sum_probs=22.7
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCC
Q 010631 365 TWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPS 399 (505)
Q Consensus 365 T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~D 399 (505)
.-.++.||...+.+ +++|++||++.|.++
T Consensus 43 r~~a~~AL~~~~~n------ve~Ave~Ll~~~~p~ 71 (73)
T 1vg5_A 43 RTQVEVALAAADDD------LTVAVEILMSQSGPS 71 (73)
T ss_dssp HHHHHHHHHHHTSC------HHHHHHHHHTCSCSS
T ss_pred HHHHHHHHHHhCCC------HHHHHHHHHHCCCCC
Confidence 45678889887643 789999999988764
No 102
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=30.65 E-value=62 Score=24.31 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=21.7
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCC
Q 010631 365 TWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRP 398 (505)
Q Consensus 365 T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~ 398 (505)
.-.|..||.+.+- .+++|++||.+++.+
T Consensus 43 ~~~a~~AL~~t~~------nve~Ave~L~~~~~d 70 (73)
T 1wiv_A 43 EDVARKALKASGG------DIEKATDWVFNNSGP 70 (73)
T ss_dssp HHHHHHHHHHTTS------CHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHhCC------CHHHHHHHHHhCCCC
Confidence 4567788888653 378999999998864
No 103
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=29.67 E-value=53 Score=23.13 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=19.2
Q ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHHHhccCC
Q 010631 367 FGVKGLVAAGMNYSNSSSIRKACEFLLSKQRP 398 (505)
Q Consensus 367 ~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~ 398 (505)
.++.||...+-+ +++|++||.+....
T Consensus 26 ~n~~AL~~~~Gd------v~~Ave~L~~~~~~ 51 (54)
T 2dah_A 26 ANLQALIATGGD------VDAAVEKLRQSSGP 51 (54)
T ss_dssp HHHHHHHHHTSC------HHHHHHHHHHHSCS
T ss_pred HHHHHHHHcCCC------HHHHHHHHHhCCCc
Confidence 457788877643 78999999987543
No 104
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=29.56 E-value=4.3e+02 Score=26.27 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHhcccCCcceeee
Q 010631 256 TKRLYDSVNVIFSLQNADGGFATY 279 (505)
Q Consensus 256 ~~~i~~Av~~Ll~~Qn~dGgw~~~ 279 (505)
.+.+.++++|+++.+.++|.|+..
T Consensus 253 ~~~i~~~l~~l~~~~~~~g~wp~~ 276 (411)
T 3e6u_A 253 HSLVKPSVDYVCQLKFPSGNYPPC 276 (411)
T ss_dssp HHTHHHHHHHHHHTCCTTSCCCSB
T ss_pred HHHHHHHHHHHHHhhccCCCCCCC
Confidence 467999999999999999988653
No 105
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=28.79 E-value=1.9e+02 Score=28.91 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=31.3
Q ss_pred CCccchHHHHHHHHHHcCCCC---CCcHHHHHHHHHHHhccCCCCCCCc
Q 010631 359 VCFTYGTWFGVKGLVAAGMNY---SNSSSIRKACEFLLSKQRPSGGWGE 404 (505)
Q Consensus 359 ~~~~y~T~~al~aL~~~G~~~---~~~~~i~ra~~~L~~~Q~~DGgWge 404 (505)
..+.+|++=.+.+|..+.... ...+.++++++|+++.+.++|.|..
T Consensus 227 ~G~aHG~aGI~~~Ll~~~~~~~~~~~~~~i~~~l~~l~~~~~~~g~wp~ 275 (411)
T 3e6u_A 227 VGAAHGLAGIYYYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPP 275 (411)
T ss_dssp CSTTTSHHHHHHHHTCGGGCCCHHHHHHTHHHHHHHHHHTCCTTSCCCS
T ss_pred CcccccHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHhhccCCCCCC
Confidence 345677766666676553321 1235688899999999998988854
No 106
>1cb8_A Protein (chondroitinase AC); lyase, chondroitin degradation; HET: MAN RAM GCU MFU; 1.90A {Pedobacter heparinus} SCOP: a.102.3.2 b.24.1.1 b.30.5.2 PDB: 1hm2_A* 1hm3_A* 1hmu_A* 1hmw_A*
Probab=27.70 E-value=4.3e+02 Score=28.47 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=21.6
Q ss_pred CchhhhHHHHHHHHHHHHHhccccCCCc
Q 010631 327 HWQEDVDHCIKRAVKFIEKIQELDGSWY 354 (505)
Q Consensus 327 ~~~~~i~~~i~rav~~L~~~Q~~DG~W~ 354 (505)
+..+++...|.+|++|..+.....|.|.
T Consensus 78 y~~~~l~~~I~~al~~~~~~~~~~~NWW 105 (678)
T 1cb8_A 78 YGDDKVFDQISKAFKYWYDSDPKSRNWW 105 (678)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCCCCSSHH
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCCcc
Confidence 3456777889999999888776677775
No 107
>3a0o_A Oligo alginate lyase; alpha/alpha ballel+anti-parallel beta sheet; 2.11A {Agrobacterium tumefaciens} PDB: 3afl_A*
Probab=27.18 E-value=57 Score=35.86 Aligned_cols=84 Identities=13% Similarity=0.230 Sum_probs=50.6
Q ss_pred hHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHH---hc-cccCCCcccCCCCc-cchHHHH---HHHHH-HcCCCCC
Q 010631 310 TSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEK---IQ-ELDGSWYGSWGVCF-TYGTWFG---VKGLV-AAGMNYS 380 (505)
Q Consensus 310 Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~---~Q-~~DG~W~g~wg~~~-~y~T~~a---l~aL~-~~G~~~~ 380 (505)
++.++.+|+...+ . ++....++++++.|.+ .. .+||+|.+ |..| .|++... +.+|. ..|.+.-
T Consensus 318 ~~l~~aalal~~e----~--~~a~~wl~~a~~~l~~~l~~~~~~DG~~~E--G~~Y~~~~~~~~~~~~~~l~~~~g~d~~ 389 (776)
T 3a0o_A 318 AVLTPACIALQGE----S--DEAGEWLDYTVEFLATLYSPWAGTDGGWAE--GPHYWMTGMAYLIEAANLIRSYIGYDLY 389 (776)
T ss_dssp HTHHHHHHHHTTS----C--HHHHHHHHHHHHHHHHTCCTTBCTTSCBTT--CHHHHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHhhcCC----c--HHHHHHHHHHHHHHHHhcccccCCCCCCcc--chhHHHHHHHHHHHHHHHHHHhhCcchh
Confidence 4455555554321 1 2334677888887654 23 68999876 3332 3444332 33443 2355433
Q ss_pred CcHHHHHHHHHHHhccCCCCC
Q 010631 381 NSSSIRKACEFLLSKQRPSGG 401 (505)
Q Consensus 381 ~~~~i~ra~~~L~~~Q~~DGg 401 (505)
..+.+++...|+.....+||-
T Consensus 390 ~~p~l~~~~~~~~~~~~p~g~ 410 (776)
T 3a0o_A 390 QRPFFQNTGRFPLYTKAPGTR 410 (776)
T ss_dssp GSHHHHHTTHHHHHHSCTTCS
T ss_pred hCHhHHHHHHHHHHeeCCCCc
Confidence 578999999999999988864
No 108
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=27.16 E-value=61 Score=22.60 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=18.9
Q ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHHhcC
Q 010631 428 AWAMLALIDAGQAETDPTPLHRAARYLINSQ 458 (505)
Q Consensus 428 a~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q 458 (505)
.-++.||...+.. ++++++||.+.+
T Consensus 27 ~~~~~AL~~t~gn------ve~Ave~L~~~~ 51 (53)
T 2knz_A 27 EANLQALIATGGD------INAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHHTSC------HHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCC------HHHHHHHHHHcC
Confidence 3567788877642 789999999865
No 109
>1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and cellulose-binding domain; glycosyl hydrolase, cellulose degradation; 1.90A {Thermobifida fusca} SCOP: a.102.1.2 b.2.2.2 PDB: 1js4_A 3tf4_A* 4tf4_A*
Probab=27.04 E-value=1.8e+02 Score=30.94 Aligned_cols=21 Identities=5% Similarity=-0.053 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHhcccCCcce
Q 010631 256 TKRLYDSVNVIFSLQNADGGF 276 (505)
Q Consensus 256 ~~~i~~Av~~Ll~~Qn~dGgw 276 (505)
.+.++-++|||++||..+|.+
T Consensus 94 ldeikwg~Dyllk~~~~~~~~ 114 (605)
T 1tf4_A 94 KDNLRWVNDYFIKAHPSPNVL 114 (605)
T ss_dssp HHHHHHHHHHHHHTCSBTTBE
T ss_pred HHHHHHHHHHHHHhccCCCeE
Confidence 467788999999999877655
No 110
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.91 E-value=41 Score=24.65 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=21.0
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCC
Q 010631 365 TWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRP 398 (505)
Q Consensus 365 T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~ 398 (505)
.-.+..||.+.+-. .++.|++||++++.+
T Consensus 23 ~~~a~~AL~~t~n~-----~~e~A~~wL~~h~~d 51 (64)
T 2crn_A 23 VHTALKALAATGRK-----TAEEALAWLHDHCND 51 (64)
T ss_dssp HHHHHHHHHHHTSC-----CHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHhCCC-----CHHHHHHHHHhCCCC
Confidence 34567777776542 478999999999854
No 111
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A*
Probab=26.78 E-value=1e+02 Score=32.40 Aligned_cols=89 Identities=10% Similarity=0.141 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHhcccCC-cceeeeecccccchhcc-cCcccc-cCCcccccCCCcchHHHHHHHHHhhhhCCCCch---
Q 010631 256 TKRLYDSVNVIFSLQNAD-GGFATYELMRSYPWLEV-LNPAET-FGDIVIDYPCVECTSASIQALTSFKKLYPGHWQ--- 329 (505)
Q Consensus 256 ~~~i~~Av~~Ll~~Qn~d-Ggw~~~~~~~~~~~l~~-~~~~e~-f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~--- 329 (505)
-+.++-+++||++||.++ |++- ..-.+..|... ..|.+. -.+.... .+...|+.+..+|+.......+...
T Consensus 191 ldeikwg~D~llk~~~~~~g~~y--~~v~~~~w~g~~~~Pe~~~~~R~~~~-~~t~~~~~~AAalA~as~vf~~~D~~yA 267 (537)
T 3gzk_A 191 LEVAREEIAWLLTMQDPATGGVY--HKVTTPSFPPLDTRPEDDDAPLVLSP-ISYAATATFCAAMAHAALVYRPFDPALS 267 (537)
T ss_dssp HHHHHHHHHHHHHTBCTTTCCBB--SEEECSSCCCTTCCGGGCCSCEEECC-BCHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCeEE--EEecCCCcCCCCcCcccCCCcceEee-cCCcHHHHHHHHHHHHHHhhcccCHHHH
Confidence 467778899999999854 6552 21112223211 112111 1111111 1223456666777766554333221
Q ss_pred hhhHHHHHHHHHHHHHhc
Q 010631 330 EDVDHCIKRAVKFIEKIQ 347 (505)
Q Consensus 330 ~~i~~~i~rav~~L~~~Q 347 (505)
++.-...+++-+|+.+..
T Consensus 268 ~~~L~~A~~~~~fa~~~~ 285 (537)
T 3gzk_A 268 SCCADAARRAYAWLGAHE 285 (537)
T ss_dssp HHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 234455667778887754
No 112
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.23 E-value=64 Score=23.47 Aligned_cols=28 Identities=29% Similarity=0.339 Sum_probs=20.9
Q ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCC
Q 010631 429 WAMLALIDAGQAETDPTPLHRAARYLINSQMENG 462 (505)
Q Consensus 429 ~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G 462 (505)
-|..||...+.. ++++++||++.+.+..
T Consensus 25 ~a~~AL~~~~~n------ve~A~e~L~~~~~~~~ 52 (63)
T 1wji_A 25 ASRQALMDNGNN------LEAALNVLLTSNKQKP 52 (63)
T ss_dssp HHHHHHHHTTSC------HHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHhCCC------HHHHHHHHHHCCCCcc
Confidence 467788877642 7899999999876543
No 113
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=25.71 E-value=62 Score=24.41 Aligned_cols=28 Identities=21% Similarity=0.178 Sum_probs=20.5
Q ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCC
Q 010631 428 AWAMLALIDAGQAETDPTPLHRAARYLINSQMEN 461 (505)
Q Consensus 428 a~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~ 461 (505)
.-|..||...+.. ++++++||++.|.++
T Consensus 44 ~~a~~AL~~~~~n------ve~Ave~Ll~~~~p~ 71 (73)
T 1vg5_A 44 TQVEVALAAADDD------LTVAVEILMSQSGPS 71 (73)
T ss_dssp HHHHHHHHHHTSC------HHHHHHHHHTCSCSS
T ss_pred HHHHHHHHHhCCC------HHHHHHHHHHCCCCC
Confidence 3566777777642 789999999977654
No 114
>1g92_A Poneratoxin, PAC-TX; neurotoxin, sodium channel inhibitor; NMR {Synthetic} SCOP: j.19.1.2
Probab=25.44 E-value=42 Score=19.23 Aligned_cols=21 Identities=24% Similarity=0.467 Sum_probs=14.9
Q ss_pred HHHHHHHhhCCCcCcCCcchhhhh
Q 010631 9 YLPMSYLYGKRFVGPITPTVLALR 32 (505)
Q Consensus 9 ~~p~~~l~~~r~~~~~~~~~~~l~ 32 (505)
|+|++||.+.-.. +|.++.|.
T Consensus 1 flpllilgsllmt---ppviqaih 21 (26)
T 1g92_A 1 FLPLLILGSLLMT---PPVIQAIH 21 (26)
T ss_dssp CHHHHHHHTCSSS---CCTTTHHH
T ss_pred CchHHHHHHHhcC---cHHHHHHH
Confidence 5799999887655 46666663
No 115
>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure initiative II, NYSGXRC, (alpha/alpha)6 barrel domain; 2.33A {Bacteroides thetaiotaomicron vpi-5482}
Probab=23.34 E-value=5.9e+02 Score=27.48 Aligned_cols=56 Identities=13% Similarity=0.119 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCC-C----CCchhhHHHHHHhHHhhh
Q 010631 181 YGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHG-W----PISDCTSEGLKASLLLSK 244 (505)
Q Consensus 181 ~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~-~----pd~d~Ta~al~aL~~~~~ 244 (505)
.-+.++++++|+.+....+ |=+.. ..|.|.+.+-..+ . ..++.++....++..+.+
T Consensus 409 ~~p~l~~~ld~~~~~~d~~---GL~~~-----~~G~W~~~dW~d~~~~~~G~~~~~~a~~y~al~~~a~ 469 (739)
T 3cih_A 409 LYPRMQTMMDYVLGRTNKN---GMVEG-----MSGDWVFVDWADGYLDKKGELSFEQVLFCRSLETMAL 469 (739)
T ss_dssp HHHHHHHHHHHHHTTBCTT---SCBCC-----CTTCBCCSCCCTTCCCCSSEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC---CCccc-----CCCCcccCCCcccccCCCCcchHHHHHHHHHHHHHHH
Confidence 4578999999999865432 32221 2355655432221 0 124567777677665443
No 116
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.38 E-value=62 Score=23.57 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCC
Q 010631 365 TWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRP 398 (505)
Q Consensus 365 T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~ 398 (505)
.-.+..||.+.+.. .+++|++||++++.+
T Consensus 23 ~~~a~~AL~~t~~~-----nve~A~ewLl~~~~d 51 (64)
T 1whc_A 23 RGRAEKALALTGNQ-----GIEAAMDWLMEHEDD 51 (64)
T ss_dssp HHHHHHHHHHHTSC-----CHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCC-----CHHHHHHHHHhCCCC
Confidence 34567788877432 378999999998754
No 117
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.31 E-value=92 Score=23.53 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=18.8
Q ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCC
Q 010631 429 WAMLALIDAGQAETDPTPLHRAARYLINSQMEN 461 (505)
Q Consensus 429 ~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~ 461 (505)
-++.||.+.+.. ++++|+||.+.+-++
T Consensus 46 ~~~~AL~~t~Gn------ve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 46 ANLQALVATDGD------IHAAIEMLLGASGPS 72 (74)
T ss_dssp HHHHHHHHTTSC------HHHHHHHHHTCCCCC
T ss_pred HHHHHHHHhCCC------HHHHHHHHHhCCCCC
Confidence 346667666532 889999999876554
No 118
>3eu8_A Putative glucoamylase; YP_210071.1, structural genomics, JOI for structural genomics, JCSG; 2.12A {Bacteroides fragilis nctc 9343}
Probab=21.79 E-value=2.4e+02 Score=28.65 Aligned_cols=101 Identities=17% Similarity=0.258 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHHhc---CCCc--chHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHH
Q 010631 162 LWDTAFAVQAIIST---NLVE--EYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGL 236 (505)
Q Consensus 162 vwDTa~a~~AL~~a---g~~~--~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al 236 (505)
+=.++|.++|++.+ |.-. +.-+++++.+++|.+.+.-. |-|-..+-..+.--=+|...+.+ -++=+||.-+
T Consensus 64 ~tniGfgL~A~~vA~e~G~I~r~ea~~R~~~tL~~l~~~~r~~---G~fyhwyD~~Tg~~lpf~~~d~~-~StVDTa~L~ 139 (430)
T 3eu8_A 64 SGGSGFGIMAILAGIDRGYVSREEGLRRMEKIVGFLEKADRFK---GAYPHWWNGETGHVQPFGQKDNG-GDLVETAFLM 139 (430)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCCBT---TBCCSEEETTTCCBCCBTTTBCS-EEHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhchhcC---CcCccccCCCCCCcCCCCcccCc-ccHHHHHHHH
Confidence 34688999888764 5432 34567888999998765533 54433332111111123333333 3455699888
Q ss_pred HHhHHhhhccccccCCccchHHHHHHHHHHHhc
Q 010631 237 KASLLLSKLSSAIVGEPIETKRLYDSVNVIFSL 269 (505)
Q Consensus 237 ~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~ 269 (505)
.+|+.+++.- .+....+..|++-++-|...
T Consensus 140 ~GlL~ar~YF---~~~~~~E~~i~~~~~~L~~~ 169 (430)
T 3eu8_A 140 QGLLAVHQYY---AEGSAEEKKLAGRIDKLWRE 169 (430)
T ss_dssp HHHHHHHHHH---TTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---cCCChhHHHHHHHHHHHHHh
Confidence 8888776521 11122345566666666554
No 119
>3eu8_A Putative glucoamylase; YP_210071.1, structural genomics, JOI for structural genomics, JCSG; 2.12A {Bacteroides fragilis nctc 9343}
Probab=20.54 E-value=2.1e+02 Score=29.15 Aligned_cols=106 Identities=15% Similarity=0.078 Sum_probs=57.9
Q ss_pred chhhHHHHHHhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCc
Q 010631 229 SDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVE 308 (505)
Q Consensus 229 ~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~ 308 (505)
+-.++++|+|++.+.+. ..+....--+++.+.+++|.+++.-.|-|.-|-..++..- +| |.......+++|
T Consensus 64 ~tniGfgL~A~~vA~e~--G~I~r~ea~~R~~~tL~~l~~~~r~~G~fyhwyD~~Tg~~---lp----f~~~d~~~StVD 134 (430)
T 3eu8_A 64 SGGSGFGIMAILAGIDR--GYVSREEGLRRMEKIVGFLEKADRFKGAYPHWWNGETGHV---QP----FGQKDNGGDLVE 134 (430)
T ss_dssp HHHHHHHHHHHHHHHHT--TSSCHHHHHHHHHHHHHHHHHSCCBTTBCCSEEETTTCCB---CC----BTTTBCSEEHHH
T ss_pred CHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHhchhcCCcCccccCCCCCCc---CC----CCcccCcccHHH
Confidence 34567777777654331 1111122247788899999998888888876533222211 22 222211223343
Q ss_pred chHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHHh
Q 010631 309 CTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKI 346 (505)
Q Consensus 309 ~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~rav~~L~~~ 346 (505)
|+..+.+|..+++...+.. +.+..|+.-++-|-+.
T Consensus 135 -Ta~L~~GlL~ar~YF~~~~--~~E~~i~~~~~~L~~~ 169 (430)
T 3eu8_A 135 -TAFLMQGLLAVHQYYAEGS--AEEKKLAGRIDKLWRE 169 (430)
T ss_dssp -HHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHHHHh
Confidence 7888888888777543221 1234555555555554
Done!