BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010632
(505 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KS8|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 2.5.
pdb|1KSC|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 5.6.
pdb|1KSD|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 6.5
Length = 433
Score = 276 bits (705), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 174/459 (37%), Positives = 236/459 (51%), Gaps = 38/459 (8%)
Query: 40 DYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGL 99
DY L S+LF+E QRSGRLP +Q++TWR +S L+D DL GGY+DAGD VKFG
Sbjct: 4 DYKQVLRDSLLFYEAQRSGRLPADQKVTWRKDSALNDQGDQGQDLTGGYFDAGDFVKFGF 63
Query: 100 PMAFTTTLLSWSVIEF--GSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNM 157
PMA+T T+L+W +I+F G S L++ + A++W TDY +KA T + Y QVG +
Sbjct: 64 PMAYTATVLAWGLIDFEAGYSSAGALDDGRKAVKWATDYFIKAHT-SQNEFYGQVGQGDA 122
Query: 158 DHHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAM 217
DH W RPEDM R YK+ T PGSD+ S+VF++ D +YS LL A
Sbjct: 123 DHAFWGRPEDMTMARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVDGTYSNNLLTHAR 182
Query: 218 KVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGH 277
++FDFA+ YRG YSDS+ FY S + Y DEL+W A+WL+RA+ +++YL +S
Sbjct: 183 QLFDFANNYRGKYSDSITDARN-FYAS-ADYRDELVWAAAWLYRATNDNTYLNTAESLYD 240
Query: 278 ILGAXXXXXXXXXXXKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQ 337
G K +G +VLL+K Q YK +Y+ LI Q
Sbjct: 241 EFGLQNWGGGLNWDSKVSGVQVLLAK------LTNKQAYKDTVQSYVNYLINNQ-----Q 289
Query: 338 YTAGGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALAKKQVD 397
T GL Y L++ AF++L A+ + A + A+ Q+D
Sbjct: 290 KTPKGLLYIDMWGTLRHAANAAFIMLEAAEL-------------GLSASSYRQFAQTQID 336
Query: 398 YILGDNPAKMSYMVGFGERYPQHVHHRGSSLPSIHAHPDHIACNDGFQYLYSRSPNPNVL 457
Y LGD S++ GFG P HHR SS P A D N S PN +VL
Sbjct: 337 YALGD--GGRSFVCGFGSNPPTRPHHRSSSCPPAPATCDWNTFN-------SPDPNYHVL 387
Query: 458 TGAILGGPXXXXXXXXXXXXYQQSEPATYINAPFVGAVA 496
+GA++GGP Y +E AT NA F A+A
Sbjct: 388 SGALVGGPDQNDNYVDDRSDYVHNEVATDYNAGFQSALA 426
>pdb|1JS4|A Chain A, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|1JS4|B Chain B, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|4TF4|A Chain A, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|4TF4|B Chain B, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|3TF4|A Chain A, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|3TF4|B Chain B, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|1TF4|A Chain A, EndoEXOCELLULASE FROM THERMOMONOSPORA
pdb|1TF4|B Chain B, EndoEXOCELLULASE FROM THERMOMONOSPORA
Length = 605
Score = 273 bits (698), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 174/471 (36%), Positives = 246/471 (52%), Gaps = 41/471 (8%)
Query: 40 DYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGL 99
+Y++AL KS+ F+E QRSG+LP N +++WRG+SGL+DG+ +DL GG+YDAGD+VKFG
Sbjct: 5 NYAEALQKSMFFYEAQRSGKLPENNRVSWRGDSGLNDGADVGLDLTGGWYDAGDHVKFGF 64
Query: 100 PMAFTTTLLSWSVIEF--GSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNM 157
PMAFT T+L+W IE G + K +RW DY +KA +P LYVQVGD +
Sbjct: 65 PMAFTATMLAWGAIESPEGYIRSGQMPYLKDNLRWVNDYFIKAH-PSPNVLYVQVGDGDA 123
Query: 158 DHHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAM 217
DH W E M R +KV PGSDV S+VF D DP+Y+ L++ A
Sbjct: 124 DHKWWGPAEVMPMERPSFKVDPSCPGSDVAAETAAAMAASSIVFADDDPAYAATLVQHAK 183
Query: 218 KVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGH 277
+++ FAD YRG YSD + + FY S+SGY DEL+WGA WL++A+ + SYLA +
Sbjct: 184 QLYTFADTYRGVYSDCVPAGA--FYNSWSGYQDELVWGAYWLYKATGDDSYLAKAEYEYD 241
Query: 278 ILGAXXXXX------XXXXXXKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGS 331
L K GT VLL+K E Q+ Y ++ ++ G
Sbjct: 242 FLSTEQQTDLRSYRWTIAWDDKSYGTYVLLAK---ETGKQK---YIDDANRWLDYWTVGV 295
Query: 332 SSFQAQYTAGGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIAL 391
+ + Y+ GG+ + L+Y TAF+ L YAK + V+ +
Sbjct: 296 NGQRVPYSPGGMAVLDTWGALRYAANTAFVALVYAKVI----------DDPVRKQRYHDF 345
Query: 392 AKKQVDYILGDNPAKMSYMVGFGERYPQHVHHRGSSLPSIHAHPDHIACNDGFQYLYSRS 451
A +Q++Y LGDNP SY+VGFG P++ HHR + H + D + S +
Sbjct: 346 AVRQINYALGDNPRNSSYVVGFGNNPPRNPHHRTA----------HGSWTDS---IASPA 392
Query: 452 PNPNVLTGAILGGPXXXXXX-XXXXXXYQQSEPATYINAPFVGAVAFFSSK 501
N +VL GA++GGP Y +E AT NA F A+A +
Sbjct: 393 ENRHVLYGALVGGPGSPNDAYTDDRQDYVANEVATDYNAGFSSALAMLVEE 443
>pdb|2XFG|A Chain A, Reassembly And Co-Crystallization Of A Family 9 Processive
Endoglucanase From Separately Expressed Gh9 And Cbm3c
Modules
Length = 466
Score = 225 bits (573), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 161/472 (34%), Positives = 229/472 (48%), Gaps = 54/472 (11%)
Query: 40 DYSDALGKSILFFEGQRSGRLPPNQ-QLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFG 98
+Y +AL K+I F+E QRSG+L + +L WRG+SGL DG +DL GG+YDAGD+VKF
Sbjct: 25 NYGEALQKAIFFYECQRSGKLDSSTLRLNWRGDSGLDDGKDAGIDLTGGWYDAGDHVKFN 84
Query: 99 LPMAFTTTLLSWSVIEFGSSMQ-----NHLENAKAAIRWGTDYLLKASTATPGALYVQVG 153
LPM+++ +L W+V E+ + + NH+ N I+W DY +K Y QVG
Sbjct: 85 LPMSYSAAMLGWAVYEYEDAFKQSGQYNHILN---NIKWACDYFIKCHPEKD-VYYYQVG 140
Query: 154 DPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLL 213
D + DH W E M R YKV +PGS V S++FK D YS + L
Sbjct: 141 DGHADHAWWGPAEVMPMERPSYKVDRSSPGSTVVAETSAALAIASIIFKKVDGEYSKECL 200
Query: 214 KTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQ 273
K A ++F+FAD + SD + FY S+SG+ DEL W A WL+ A+ +SSYL +
Sbjct: 201 KHAKELFEFADTTK---SDDGYTAANGFYNSWSGFYDELSWAAVWLYLATNDSSYLDKAE 257
Query: 274 SNGHILGAXXXXXXXXXXXKRA------GTKVLLSKGFLEKNTQEFQLYKAHSDNYICSL 327
S G + GT +LL++ ++ + + YK + ++
Sbjct: 258 SYSDKWGYEPQTNIPKYKWAQCWDDVTYGTYLLLAR--IKNDNGK---YKEAIERHLDWW 312
Query: 328 IPGSSSFQAQYTAGGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAEN 387
G + + YT GL + +L+Y TTTAFL Y+ + NG KA+
Sbjct: 313 TTGYNGERITYTPKGLAWLDQWGSLRYATTTAFLACVYSDW--ENG-------DKEKAKT 363
Query: 388 LIALAKKQVDYILGDNPAKMSYMVGFGERYPQHVHHR---GSSLPSIHAHPDHIACNDGF 444
+ A+ Q DY LG S++VGFGE P+ HHR GS S P+H
Sbjct: 364 YLEFARSQADYALG--STGRSFVVGFGENPPKRPHHRTAHGSWADSQMEPPEH------- 414
Query: 445 QYLYSRSPNPNVLTGAILGGPXXXXXXXXXXXXYQQSEPATYINAPFVGAVA 496
+VL GA++GGP Y +E A NA FVG +A
Sbjct: 415 ---------RHVLYGALVGGPDSTDNYTDDISNYTCNEVACDYNAGFVGLLA 457
>pdb|4DOD|A Chain A, The Structure Of Cbescii Cela Gh9 Module
pdb|4DOE|A Chain A, The Liganded Structure Of Cbescii Cela Gh9 Module
Length = 475
Score = 218 bits (555), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 155/473 (32%), Positives = 233/473 (49%), Gaps = 58/473 (12%)
Query: 40 DYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGL 99
+Y +AL K+I+F+E Q SG+LP + WRG+S L DG +DL GG++DAGD+VKF L
Sbjct: 27 NYGEALQKAIMFYEFQMSGKLPNWVRNNWRGDSALKDGQDNGLDLTGGWFDAGDHVKFNL 86
Query: 100 PMAFTTTLLSWSVIEFGSSM--QNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNM 157
PM++T T+LSW+V E+ + LE+ I W DY +K + Y QVGD +
Sbjct: 87 PMSYTGTMLSWAVYEYKDAFVKSGQLEHILNQIEWVNDYFVKCHPSKY-VYYYQVGDGSK 145
Query: 158 DHHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAM 217
DH W E M R +KV+ +PGS V S+V KD +P+ + L+ A
Sbjct: 146 DHAWWGPAEVMQMERPSFKVTQSSPGSTVVAETAASLAAASIVLKDRNPTKAATYLQHAK 205
Query: 218 KVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYL----AYIQ 273
++++FA+ + SD+ + +Y S+SG+ DEL W A WL+ A+ +S+YL +Y+Q
Sbjct: 206 ELYEFAEVTK---SDAGYTAANGYYNSWSGFYDELSWAAVWLYLATNDSTYLTKAESYVQ 262
Query: 274 SNGHILGAXXXXXXXXXXXKRA--GTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGS 331
+ I G+ G +LL+K K+ + Q+ ++H D + G
Sbjct: 263 NWPKISGSNTIDYKWAHCWDDVHNGAALLLAK-ITGKDIYK-QIIESHLDYWTT----GY 316
Query: 332 SSFQAQYTAGGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIAL 391
+ + +YT GL + +L+Y TTTAFL Y+ ++ G + K E
Sbjct: 317 NGERIKYTPKGLAWLDQWGSLRYATTTAFLAFVYSDWV---------GCPSTKKEIYRKF 367
Query: 392 AKKQVDYILGDNPAKMSYMVGFGERYPQHVHHRGS--------SLPSIHAHPDHIACNDG 443
+ Q+DY LG A S++VGFG P+ HHR + S+PS H H
Sbjct: 368 GESQIDYALGS--AGRSFVVGFGTNPPKRPHHRTAHSSWADSQSIPSYHRH--------- 416
Query: 444 FQYLYSRSPNPNVLTGAILGGPXXXXXXXXXXXXYQQSEPATYINAPFVGAVA 496
L GA++GGP Y +E A NA FVGA+A
Sbjct: 417 ------------TLYGALVGGPGSDDSYTDDISNYVNNEVACDYNAGFVGALA 457
>pdb|1GA2|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1GA2|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1G87|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1G87|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1KFG|A Chain A, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
pdb|1KFG|B Chain B, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
Length = 614
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 153/459 (33%), Positives = 217/459 (47%), Gaps = 31/459 (6%)
Query: 40 DYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGL 99
+Y +AL KSI+F+E QRSG LP +++ WR +SG+ DGS VDL GG+YDAGD+VKF L
Sbjct: 5 NYGEALQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDGSDVGVDLTGGWYDAGDHVKFNL 64
Query: 100 PMAFTTTLLSWSVIEFGSSMQN--HLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNM 157
PM++T+ +L+WS+ E + + I+W DY +K + TPG Y QVGD
Sbjct: 65 PMSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKCN-PTPGVYYYQVGDGGK 123
Query: 158 DHHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAM 217
DH W E M R +KV PGS V +VVFK SDP+Y+ K + A
Sbjct: 124 DHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISHAK 183
Query: 218 KVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGH 277
+FD ADK + SD+ Y S S + D+L W A WL+ A+ +S+YL +S
Sbjct: 184 NLFDMADKAK---SDA-GYTAASGYYSSSSFYDDLSWAAVWLYLATNDSTYLDKAESYVP 239
Query: 278 ILGAXXXXXXXXXXXKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQ 337
G + V L QLYK + + G + +
Sbjct: 240 NWGKEQQTDIIAYKWGQCWDDVHYGAELLLAKLTNKQLYKDSIEMNLDFWTTGVNGTRVS 299
Query: 338 YTAGGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALAKKQVD 397
YT GL + +L++ TT AFL YA++ G + K K Q+D
Sbjct: 300 YTPKGLAWLFQWGSLRHATTQAFLAGVYAEWE---------GCTPSKVSVYKDFLKSQID 350
Query: 398 YILGDNPAKMSYMVGFGERYPQHVHHRGSSLPSIHAHPDHIACNDGFQYLYSRSPNPNVL 457
Y LG S++VG+G PQH HHR + H + D + S + + + +
Sbjct: 351 YALGS--TGRSFVVGYGVNPPQHPHHRTA----------HGSWTD---QMTSPTYHRHTI 395
Query: 458 TGAILGGPXXXXXXXXXXXXYQQSEPATYINAPFVGAVA 496
GA++GGP Y +E A NA F GA+A
Sbjct: 396 YGALVGGPDNADGYTDEINNYVNNEIACDYNAGFTGALA 434
>pdb|1K72|A Chain A, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
pdb|1K72|B Chain B, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
Length = 614
Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 153/459 (33%), Positives = 217/459 (47%), Gaps = 31/459 (6%)
Query: 40 DYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGL 99
+Y +AL KSI+F+E QRSG LP +++ WR +SG+ DGS VDL GG+YDAGD+VKF L
Sbjct: 5 NYGEALQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDGSDVGVDLTGGWYDAGDHVKFNL 64
Query: 100 PMAFTTTLLSWSVIEFGSSMQN--HLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNM 157
PM++T+ +L+WS+ E + + I+W DY +K + TPG Y QVGD
Sbjct: 65 PMSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKCN-PTPGVYYYQVGDGGK 123
Query: 158 DHHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAM 217
DH W E M R +KV PGS V +VVFK SDP+Y+ K + A
Sbjct: 124 DHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISHAK 183
Query: 218 KVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGH 277
+FD ADK + SD+ Y S S + D+L W A WL+ A+ +S+YL +S
Sbjct: 184 NLFDMADKAK---SDA-GYTAASGYYSSSSFYDDLSWAAVWLYLATNDSTYLDKAESYVP 239
Query: 278 ILGAXXXXXXXXXXXKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQ 337
G + V L QLYK + + G + +
Sbjct: 240 NWGKEQQTDIIAYKWGQXWDDVHYGAELLLAKLTNKQLYKDSIEMNLDFWTTGVNGTRVS 299
Query: 338 YTAGGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALAKKQVD 397
YT GL + +L++ TT AFL YA++ G + K K Q+D
Sbjct: 300 YTPKGLAWLFQWGSLRHATTQAFLAGVYAEWE---------GCTPSKVSVYKDFLKSQID 350
Query: 398 YILGDNPAKMSYMVGFGERYPQHVHHRGSSLPSIHAHPDHIACNDGFQYLYSRSPNPNVL 457
Y LG S++VG+G PQH HHR + H + D + S + + + +
Sbjct: 351 YALGS--TGRSFVVGYGVNPPQHPHHRTA----------HGSWTD---QMTSPTYHRHTI 395
Query: 458 TGAILGGPXXXXXXXXXXXXYQQSEPATYINAPFVGAVA 496
GA++GGP Y +E A NA F GA+A
Sbjct: 396 YGALVGGPDNADGYTDEINNYVNNEIACDYNAGFTGALA 434
>pdb|1IA6|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticum
pdb|1IA7|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticium In Complex With Cellobiose
Length = 441
Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 143/467 (30%), Positives = 212/467 (45%), Gaps = 55/467 (11%)
Query: 39 QDYSDALGKSILFFEGQRSG-RLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKF 97
DYS AL SI+FF+ + G + N WRG +DGS VDL GGY+DAGD+VKF
Sbjct: 4 HDYSTALKDSIIFFDANKCGPQAGENNVFDWRGACHTTDGSDVGVDLTGGYHDAGDHVKF 63
Query: 98 GLPMAFTTTLLSWSVIEFGSSMQNHLENAK--AAIRWGTDYLLKASTATPGALYVQVGDP 155
GLP ++ +L WS+ EF S K +++ TDY LK S Y QVG+
Sbjct: 64 GLPQGYSAAILGWSLYEFKESFDATGNTTKMLQQLKYFTDYFLK-SHPNSTTFYYQVGEG 122
Query: 156 NMDHHCWERPEDMDTPR-NVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLK 214
N DH W PE+ R ++YK +P SD+ + +K+ D +Y+TK L
Sbjct: 123 NADHTYWGAPEEQTGQRPSLYKADPSSPASDILSETSAALTLMYLNYKNIDSAYATKCLN 182
Query: 215 TAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQS 274
A +++ +G + FY + S + D+L W A+WL+ A+ +S+Y+ +
Sbjct: 183 AAKELYAMGKANQGVGNGQ------SFYQATS-FGDDLAWAATWLYTATNDSTYITDAEQ 235
Query: 275 NGHILGAXXXXXXXXXXXKRAGTKVLLSKGFLEKNTQEFQLYKAHSD---NYICSLIPGS 331
LG + + Q+YK + NY +
Sbjct: 236 F-ITLGNTMNENKMQDKWTMCWDDMYVPAALRLAQITGKQIYKDAIEFNFNYWKT----- 289
Query: 332 SSFQAQYTAGGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIAL 391
Q T GGL + ++ L+Y + ++L Y K ++L+ L
Sbjct: 290 ---QVTTTPGGLKWLSNWGVLRYAAAESMVMLVYCKQNPD--------------QSLLDL 332
Query: 392 AKKQVDYILGDNPAKMSYMVGFGERYPQHVHHRGSSLPSIHAHPDHIACNDGFQYLYSRS 451
AKKQVDYILGDNPA MSY++G+G + H HHR + +G+ Y +
Sbjct: 333 AKKQVDYILGDNPANMSYIIGYGSNWCIHPHHRAA---------------NGYTYANGDN 377
Query: 452 PNP--NVLTGAILGGPXXXXXXXXXXXXYQQSEPATYINAPFVGAVA 496
P ++LTGA++GGP YQ +E A NA VG +A
Sbjct: 378 AKPAKHLLTGALVGGPDQNDKFLDDANQYQYTEVALDYNAGLVGVLA 424
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt
Length = 611
Score = 152 bits (384), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 138/510 (27%), Positives = 212/510 (41%), Gaps = 91/510 (17%)
Query: 40 DYSDALGKSILFFEGQRSGR-LPPNQQLTWRG--------------NSGLSDG------- 77
+Y+ AL S+ F++ G + N L+WRG N+ +SDG
Sbjct: 39 NYAKALQYSMFFYDANMCGTGVDENSLLSWRGDCHVYDARLPLDSQNTNMSDGFISSNRS 98
Query: 78 -----SSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLSWSVIEFGSSMQ--NHLENAKAAI 130
VD+ GG++DAGD+VKFGLP A+ + + W EF + +A+ +
Sbjct: 99 VLDPDGDGKVDVSGGFHDAGDHVKFGLPEAYAASTVGWGYYEFKDQFRATGQAVHAEVIL 158
Query: 131 RWGTDYLLKAS----TATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDV 186
R+ DY ++ + + A QVGD ++DH W PE+ R + ++ + PG+D+
Sbjct: 159 RYFNDYFMRCTFRDASGNVVAFCHQVGDGDIDHAFWGAPENDTMFRRGWFITKEKPGTDI 218
Query: 187 XXXXXXXXXXXSVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYS 246
+ FKD+DP Y+ K L A +FDFA+K + Y S
Sbjct: 219 ISATAASLAINYMNFKDTDPQYAAKSLDYAKALFDFAEKNPKGVVQGEDGP--KGYYGSS 276
Query: 247 GYLDELLWGASWLHRASQNSSYLA-------YIQSNGHILGAXXXXXXXXXXXKRAGTKV 299
+ D+ W A+WL+ A+QN YL Y G I +GT
Sbjct: 277 KWQDDYCWAAAWLYLATQNEHYLDEAFKYYDYYAPPGWI---------HCWNDVWSGTAC 327
Query: 300 LLSK--GFLEKNTQEFQ-LYKAHSDNY----------ICSLIPGSSSFQAQYTAGGLFYK 346
+L++ +K++Q F+ YK S+ I L+ S T GG +
Sbjct: 328 ILAEINDLYDKDSQNFEDRYKRASNKNQWEQIDFWKPIQDLLDKWSGGGITVTPGGYVFL 387
Query: 347 ASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALAKKQVDYILGDNPAK 406
+ +Y T + L Y K+ G + K N A+ Q+DY+LG NP
Sbjct: 388 NQWGSARYNTAAQLIALVYDKHH---------GDTPSKYANW---ARSQMDYLLGKNPLN 435
Query: 407 MSYMVGFGERYPQHVHHRGSSLPSIHAHPDHIACNDGFQYLYSRSPNPNVLTGAILGGPX 466
Y+VG+ ++ HHR +S G + SP+ VL GA++GGP
Sbjct: 436 RCYVVGYSSNSVKYPHHRAAS---------------GLKDANDSSPHKYVLYGALVGGPD 480
Query: 467 XXXXXXXXXXXYQQSEPATYINAPFVGAVA 496
Y +E A NA FVGA A
Sbjct: 481 ASDQHVDRTNDYIYNEVAIDYNAAFVGACA 510
>pdb|3EZ8|A Chain A, Crystal Structure Of Endoglucanase Cel9a From The
Thermoacidophilic Alicyclobacillus Acidocaldarius
pdb|3GZK|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela
pdb|3H2W|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellobiose
pdb|3H3K|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellotetraose
pdb|3RX5|A Chain A, Structure Of Aacel9a In Complex With Cellotriose-Like
Isofagomine
pdb|3RX7|A Chain A, Structure Of Aacel9a In Complex With Cellotetraose-Like
Isofagomine
pdb|3RX8|A Chain A, Structure Of Aacel9a In Complex With Cellobiose-Like
Isofagomine
Length = 537
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 103/479 (21%), Positives = 171/479 (35%), Gaps = 60/479 (12%)
Query: 41 YSDALGKSILFFEGQRSGR-LPPNQQLTW-RGNSGLSD----GSSYHVDLVGGYYDAGDN 94
Y D L + FF+ Q G LP ++ W G SD G+ + GG++DAGD
Sbjct: 88 YRDVLEAMLRFFDYQLCGVVLPEDEAGPWAHGACHTSDAKVFGTERALACPGGWHDAGDY 147
Query: 95 VKFGLPMAFTTTLLSWSVIEFGSSMQN-----------HLENAKAAIRWGTDYLLKASTA 143
K+ +P A L + F +++ + HL A R +LL
Sbjct: 148 GKYTVPAAKAVADLLLAHEYFPAALAHVRPMRSVHRAPHLPPALEVAREEIAWLLTMQDP 207
Query: 144 TPGALYVQVGDPN---MDHHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVV 200
G +Y +V P+ +D RPED D P + +S ++V
Sbjct: 208 ATGGVYHKVTTPSFPPLD----TRPEDDDAPLVLSPISYA-----ATATFCAAMAHAALV 258
Query: 201 FKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLH 260
++ DP+ S+ A + + + + + + ++ Y + DELLW + L
Sbjct: 259 YRPFDPALSSCCADAARRAYAWLGAHEMQPFHNPDGILTGEYGD-AELRDELLWASCALL 317
Query: 261 RASQNSSYLAYIQSNGHILGAXXXXXXXXXXXKRAGTKVLLSKGFLEKNTQEFQLYKAHS 320
R + +S A+ + +L G L T +
Sbjct: 318 RMTGDS---AWARVCEPLLDLDLPWELGWADVALYGVMDYL-------RTPRAAVSDDVR 367
Query: 321 DNYICSLIPGSSSFQAQYTAGGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGS 380
+ L+ + A + + + + + L A L+ GV +
Sbjct: 368 NKVKSRLLRELDALAAMAESHPFGIPMRDDDFIWGSNMVLLNRAMAFLLAEGVGVLHPAA 427
Query: 381 STVKAENLIALAKKQVDYILGDNPAKMSYMVGFGERYPQHVHHRGSSLPSIHAHPDHIAC 440
TV A++ DY+ G NP Y+ GFG+R +H HHR PS+ DH
Sbjct: 428 HTV--------AQRAADYLFGANPLGQCYVTGFGQRPVRHPHHR----PSVADDVDHPVP 475
Query: 441 NDGFQYLYSRSPNPNV---LTGAILGGPXXXXXXXXXXXXYQQSEPATYINAPFVGAVA 496
+ PN ++ + A L G Y +E A Y N+P V +A
Sbjct: 476 G-----MVVGGPNRHLQDEIARAQLAGRPAMEAYIDHQDSYSTNEVAVYWNSPAVFVIA 529
>pdb|1RQ5|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 610
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 84/393 (21%), Positives = 136/393 (34%), Gaps = 70/393 (17%)
Query: 78 SSYHVDLVGGYYDAGDNVKF----GLPM---------AFTTTLLSWSVIEFGSSMQNHLE 124
+Y D+ GG+YDAGD+ K+ G+ + A L +W G
Sbjct: 164 KNYTKDVTGGWYDAGDHGKYVVNGGIAVWTLMNMYERAKIRGLDNWGPYRDGGMNIPEQN 223
Query: 125 NAKAAI----RWGTDYLLKASTATPGALYVQVGDPN---MDHHC-----WER----PEDM 168
N I RW ++ K + DP+ M HH W P +
Sbjct: 224 NGYPDILDEARWEIEFFKKMQV-------TEKEDPSIAGMVHHKIHDFRWTALGMLPHED 276
Query: 169 DTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAMKVFDFADKYRG 228
PR + VST + ++KD DP+++ L+ A + A K+
Sbjct: 277 PQPRYLRPVSTA-----ATLNFAATLAQSARLWKDYDPTFAADCLEKAEIAWQAALKHPD 331
Query: 229 SYSDSLNSVVCPFYCSYSG-YL-DELLWGASWLHRASQNSSYLAYIQSNGHILGAXXXXX 286
Y++ P Y+ Y+ DE W A L+ + Y Y+ ++ H L
Sbjct: 332 IYAEYTPGSGGPGGGPYNDDYVGDEFYWAACELYVTTGKDEYKNYLMNSPHYLEMPAKMG 391
Query: 287 XXXXXXKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTAGGLFYK 346
G L F TQ + + +P + +A+ K
Sbjct: 392 ENGGAN---GEDNGLWGCFTWGTTQGLGTITLA---LVENGLPATDIQKARNNIA----K 441
Query: 347 ASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALA--------KKQVD- 397
A++ L+ + + L K G GS++ +I + K +D
Sbjct: 442 AADRWLENIEEQGYRLPI--KQAEDERGGYPWGSNSFILNQMIVMGYAYDFTGDSKYLDG 499
Query: 398 ------YILGDNPAKMSYMVGFGERYPQHVHHR 424
Y+LG N SY+ G+GER Q+ H R
Sbjct: 500 MFDGISYLLGRNAMDQSYVTGYGERPLQNPHDR 532
>pdb|1UT9|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 609
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 84/393 (21%), Positives = 136/393 (34%), Gaps = 70/393 (17%)
Query: 78 SSYHVDLVGGYYDAGDNVKF----GLPM---------AFTTTLLSWSVIEFGSSMQNHLE 124
+Y D+ GG+YDAGD+ K+ G+ + A L +W G
Sbjct: 164 KNYTKDVTGGWYDAGDHGKYVVNGGIAVWTLMNMYERAKIRGLDNWGPYRDGGMNIPEQN 223
Query: 125 NAKAAI----RWGTDYLLKASTATPGALYVQVGDPN---MDHHC-----WER----PEDM 168
N I RW ++ K + DP+ M HH W P +
Sbjct: 224 NGYPDILDEARWEIEFFKKMQV-------TEKEDPSIAGMVHHKIHDFRWTALGMLPHED 276
Query: 169 DTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAMKVFDFADKYRG 228
PR + VST + ++KD DP+++ L+ A + A K+
Sbjct: 277 PQPRYLRPVSTA-----ATLNFAATLAQSARLWKDYDPTFAADCLEKAEIAWQAALKHPD 331
Query: 229 SYSDSLNSVVCPFYCSYSG-YL-DELLWGASWLHRASQNSSYLAYIQSNGHILGAXXXXX 286
Y++ P Y+ Y+ DE W A L+ + Y Y+ ++ H L
Sbjct: 332 IYAEYTPGSGGPGGGPYNDDYVGDEFYWAACELYVTTGKDEYKNYLMNSPHYLEMPAKMG 391
Query: 287 XXXXXXKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTAGGLFYK 346
G L F TQ + + +P + +A+ K
Sbjct: 392 ENGGAN---GEDNGLWGCFTWGTTQGLGTITLA---LVENGLPATDIQKARNNIA----K 441
Query: 347 ASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALA--------KKQVD- 397
A++ L+ + + L K G GS++ +I + K +D
Sbjct: 442 AADRWLENIEEQGYRLPI--KQAEDERGGYPWGSNSFILNQMIVMGYAYDFTGDSKYLDG 499
Query: 398 ------YILGDNPAKMSYMVGFGERYPQHVHHR 424
Y+LG N SY+ G+GER Q+ H R
Sbjct: 500 MFDGISYLLGRNAMDQSYVTGYGERPLQNPHDR 532
>pdb|3E6G|A Chain A, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|B Chain B, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|C Chain C, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|D Chain D, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3NNP|A Chain A, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NNP|B Chain B, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NMY|A Chain A, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|B Chain B, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|C Chain C, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|D Chain D, Native Structure Of Xometc At Ph 9.0
Length = 400
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 12/64 (18%)
Query: 81 HVDLVGGYYDAGDNVKFGLPMAFTTTLLSWSVIEFGS------------SMQNHLENAKA 128
H D+VGG GDN + MAF + F S M+ H ENA A
Sbjct: 218 HSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKTLPLRMRAHCENALA 277
Query: 129 AIRW 132
+W
Sbjct: 278 LAQW 281
>pdb|2Z59|A Chain A, Complex Structures Of Mouse Rpn13 (22-130aa) And Ubiquitin
Length = 109
Score = 28.9 bits (63), Expect = 6.7, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 138 LKASTATP----GALYVQVGDPNMDHHCWE 163
LK +T TP G +Y+Q D ++ H CW+
Sbjct: 12 LKGTTVTPDKRKGLVYIQQTDDSLIHFCWK 41
>pdb|2R2Y|A Chain A, Crystal Structure Of The Proteasomal Rpn13 Pru-Domain
Length = 153
Score = 28.5 bits (62), Expect = 9.7, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 138 LKASTATP----GALYVQVGDPNMDHHCWE 163
LK +T TP G +Y+Q D ++ H CW+
Sbjct: 36 LKGTTVTPDKRKGLVYIQQTDDSLIHFCWK 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,637,621
Number of Sequences: 62578
Number of extensions: 596092
Number of successful extensions: 1174
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1111
Number of HSP's gapped (non-prelim): 25
length of query: 505
length of database: 14,973,337
effective HSP length: 103
effective length of query: 402
effective length of database: 8,527,803
effective search space: 3428176806
effective search space used: 3428176806
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)