Query 010634
Match_columns 505
No_of_seqs 215 out of 949
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 02:48:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5594 Uncharacterized integr 100.0 3.2E-86 7E-91 686.9 34.4 476 3-503 20-541 (827)
2 KOG1134 Uncharacterized conser 100.0 3.4E-83 7.4E-88 687.3 38.1 485 1-503 1-487 (728)
3 PF02714 DUF221: Domain of unk 100.0 1.3E-36 2.8E-41 306.2 19.2 180 323-503 1-181 (325)
4 PF13967 RSN1_TM: Late exocyto 100.0 4.2E-36 9E-41 269.0 13.3 156 6-180 1-157 (157)
5 PF14703 DUF4463: Domain of un 99.0 5.4E-10 1.2E-14 89.3 6.1 65 238-302 1-85 (85)
6 PF04547 Anoctamin: Calcium-ac 97.5 0.0023 4.9E-08 67.6 14.4 61 422-482 162-222 (452)
7 KOG2513 Protein required for m 97.0 0.011 2.5E-07 62.0 13.5 109 366-484 261-373 (647)
8 TIGR01659 sex-lethal sex-letha 96.8 0.0057 1.2E-07 61.9 9.1 40 198-242 104-143 (346)
9 PLN03134 glycine-rich RNA-bind 95.8 0.093 2E-06 46.1 10.1 36 200-240 33-68 (144)
10 PLN03120 nucleic acid binding 95.6 0.081 1.8E-06 50.6 9.4 34 201-239 4-37 (260)
11 TIGR01661 ELAV_HUD_SF ELAV/HuD 95.6 0.11 2.3E-06 52.9 11.1 101 201-378 3-111 (352)
12 PLN03121 nucleic acid binding 95.6 0.094 2E-06 49.4 9.4 36 199-239 3-38 (243)
13 KOG0144 RNA-binding protein CU 95.4 0.086 1.9E-06 53.0 9.3 133 200-343 33-188 (510)
14 TIGR01628 PABP-1234 polyadenyl 95.4 0.15 3.2E-06 55.6 11.9 166 203-379 2-201 (562)
15 TIGR01648 hnRNP-R-Q heterogene 94.8 0.27 5.8E-06 53.0 11.6 173 200-380 57-257 (578)
16 KOG0122 Translation initiation 94.7 0.15 3.3E-06 47.6 8.1 35 319-353 230-266 (270)
17 TIGR01661 ELAV_HUD_SF ELAV/HuD 94.1 0.27 5.8E-06 50.0 9.5 36 201-241 269-304 (352)
18 KOG0149 Predicted RNA-binding 92.7 0.31 6.8E-06 45.4 6.4 34 203-241 14-47 (247)
19 TIGR01628 PABP-1234 polyadenyl 92.3 0.7 1.5E-05 50.3 9.8 38 199-241 176-213 (562)
20 TIGR01648 hnRNP-R-Q heterogene 92.0 0.84 1.8E-05 49.3 9.5 36 321-356 270-307 (578)
21 KOG0125 Ataxin 2-binding prote 91.9 0.77 1.7E-05 44.8 8.1 49 320-368 136-196 (376)
22 KOG2514 Uncharacterized conser 90.8 2.5 5.5E-05 46.6 11.5 53 425-477 435-487 (861)
23 KOG0145 RNA-binding protein EL 90.7 2.6 5.7E-05 39.8 10.1 145 203-356 43-209 (360)
24 TIGR01622 SF-CC1 splicing fact 89.3 3.4 7.3E-05 43.6 11.3 36 200-240 88-123 (457)
25 TIGR01645 half-pint poly-U bin 89.2 2.3 4.9E-05 46.2 9.7 43 320-362 246-290 (612)
26 KOG0148 Apoptosis-promoting RN 88.8 0.75 1.6E-05 43.7 5.0 154 201-378 6-186 (321)
27 PF13893 RRM_5: RNA recognitio 88.7 0.65 1.4E-05 33.2 3.8 24 320-343 21-44 (56)
28 TIGR01642 U2AF_lg U2 snRNP aux 87.5 7.1 0.00015 41.8 12.4 35 320-354 464-500 (509)
29 TIGR01649 hnRNP-L_PTB hnRNP-L/ 86.8 7.3 0.00016 41.5 11.9 35 200-239 274-309 (481)
30 KOG0117 Heterogeneous nuclear 85.6 1.2 2.7E-05 45.2 4.8 36 318-353 206-245 (506)
31 KOG4206 Spliceosomal protein s 85.3 1.5 3.2E-05 40.7 4.9 45 318-362 50-96 (221)
32 TIGR01622 SF-CC1 splicing fact 83.1 6.8 0.00015 41.3 9.6 23 320-342 228-250 (457)
33 smart00361 RRM_1 RNA recogniti 82.3 1.8 3.9E-05 32.6 3.6 25 319-343 36-60 (70)
34 TIGR01645 half-pint poly-U bin 81.9 5.1 0.00011 43.6 8.0 36 200-240 106-141 (612)
35 KOG0127 Nucleolar protein fibr 81.6 6.2 0.00014 41.4 8.0 22 319-340 333-354 (678)
36 KOG0107 Alternative splicing f 81.2 1.6 3.6E-05 38.9 3.3 34 319-352 46-81 (195)
37 TIGR01659 sex-lethal sex-letha 80.1 4.8 0.0001 40.9 6.7 61 319-379 148-216 (346)
38 PF00076 RRM_1: RNA recognitio 79.2 1.9 4.2E-05 31.7 2.8 24 319-342 38-61 (70)
39 PF14259 RRM_6: RNA recognitio 78.6 2 4.3E-05 32.0 2.7 23 319-341 38-60 (70)
40 PF04059 RRM_2: RNA recognitio 78.6 3.4 7.3E-05 33.5 4.1 23 202-224 2-25 (97)
41 PF00076 RRM_1: RNA recognitio 78.4 3.5 7.5E-05 30.3 4.0 33 204-241 1-33 (70)
42 KOG4211 Splicing factor hnRNP- 78.1 5 0.00011 41.5 6.0 23 319-341 144-166 (510)
43 PF14259 RRM_6: RNA recognitio 76.4 4.7 0.0001 29.9 4.3 33 204-241 1-33 (70)
44 KOG0109 RNA-binding protein LA 72.2 5.7 0.00012 38.4 4.4 35 204-243 5-39 (346)
45 smart00360 RRM RNA recognition 70.6 5.7 0.00012 28.5 3.5 23 319-341 37-59 (71)
46 smart00362 RRM_2 RNA recogniti 70.2 6.2 0.00013 28.5 3.6 24 319-342 38-61 (72)
47 smart00362 RRM_2 RNA recogniti 69.9 6.6 0.00014 28.3 3.7 34 203-241 1-34 (72)
48 KOG0117 Heterogeneous nuclear 69.9 8.8 0.00019 39.3 5.4 85 293-377 95-185 (506)
49 KOG0108 mRNA cleavage and poly 68.3 17 0.00036 38.0 7.3 35 202-241 19-53 (435)
50 KOG0146 RNA-binding protein ET 68.2 9.7 0.00021 36.3 5.0 50 319-380 59-113 (371)
51 PF07292 NID: Nmi/IFP 35 domai 65.2 1.6 3.5E-05 34.6 -0.6 30 198-227 49-79 (88)
52 cd00590 RRM RRM (RNA recogniti 63.3 12 0.00025 27.1 3.9 24 320-343 40-63 (74)
53 cd00590 RRM RRM (RNA recogniti 62.9 9.9 0.00022 27.5 3.5 32 203-239 1-32 (74)
54 KOG1457 RNA binding protein (c 62.6 11 0.00023 35.2 4.0 24 319-342 76-99 (284)
55 PF01102 Glycophorin_A: Glycop 55.3 16 0.00035 30.9 3.7 21 12-32 73-93 (122)
56 PF02439 Adeno_E3_CR2: Adenovi 52.6 39 0.00085 22.1 4.2 30 3-32 4-33 (38)
57 KOG0226 RNA-binding proteins [ 50.9 27 0.00058 33.3 4.6 24 319-342 231-254 (290)
58 KOG1365 RNA-binding protein Fu 50.3 1.5E+02 0.0032 30.1 9.9 24 318-341 322-345 (508)
59 KOG3966 p53-mediated apoptosis 48.9 1.8E+02 0.0038 28.2 9.7 69 319-398 39-118 (360)
60 KOG0114 Predicted RNA-binding 47.3 20 0.00043 29.4 2.8 26 319-344 56-81 (124)
61 PLN03074 auxin influx permease 46.0 30 0.00064 36.8 4.8 66 432-497 383-455 (473)
62 PF11608 Limkain-b1: Limkain b 45.2 41 0.0009 26.5 4.2 40 320-359 39-80 (90)
63 KOG4208 Nucleolar RNA-binding 42.6 23 0.00051 32.6 2.9 23 319-341 91-113 (214)
64 PF11823 DUF3343: Protein of u 41.7 46 0.00099 25.2 4.0 36 321-359 2-37 (73)
65 COG5438 Predicted multitransme 41.2 2.3E+02 0.0051 28.8 9.8 56 427-482 207-262 (385)
66 KOG0105 Alternative splicing f 40.0 16 0.00035 32.9 1.4 21 319-339 44-64 (241)
67 PF04059 RRM_2: RNA recognitio 39.4 33 0.00071 27.8 3.0 25 319-343 44-68 (97)
68 KOG4050 Glutamate transporter 36.4 1.8E+02 0.0038 25.8 7.1 42 352-393 33-75 (188)
69 TIGR01649 hnRNP-L_PTB hnRNP-L/ 35.9 42 0.0009 35.8 4.1 35 201-240 2-36 (481)
70 COG0724 RNA-binding proteins ( 34.8 50 0.0011 31.0 4.2 36 201-241 115-150 (306)
71 TIGR01642 U2AF_lg U2 snRNP aux 33.1 55 0.0012 34.9 4.5 35 319-353 336-372 (509)
72 PRK06231 F0F1 ATP synthase sub 32.8 1.3E+02 0.0028 28.0 6.3 37 158-194 50-86 (205)
73 TIGR01257 rim_protein retinal- 32.5 3.5E+02 0.0076 34.8 11.4 22 376-397 650-671 (2272)
74 KOG0144 RNA-binding protein CU 31.7 72 0.0016 32.8 4.6 25 319-343 75-99 (510)
75 COG0798 ACR3 Arsenite efflux p 31.5 4.4E+02 0.0096 26.6 9.9 121 352-501 121-246 (342)
76 KOG0110 RNA-binding protein (R 31.4 1.1E+02 0.0023 33.7 6.0 60 319-378 559-635 (725)
77 KOG4207 Predicted splicing fac 29.8 41 0.0009 31.1 2.3 35 319-353 54-90 (256)
78 KOG1548 Transcription elongati 29.4 1.1E+02 0.0025 30.5 5.4 45 298-343 286-337 (382)
79 PF05393 Hum_adeno_E3A: Human 29.3 75 0.0016 25.0 3.3 36 10-46 36-74 (94)
80 PF10309 DUF2414: Protein of u 28.2 1.6E+02 0.0036 21.6 4.8 44 201-244 5-53 (62)
81 KOG1278 Endosomal membrane pro 27.7 3.1E+02 0.0066 29.6 8.5 51 383-434 439-500 (628)
82 PRK03814 oxaloacetate decarbox 26.0 1.3E+02 0.0028 23.7 4.2 22 1-22 1-22 (85)
83 PF14752 RBP_receptor: Retinol 25.1 6.7E+02 0.014 27.7 10.9 53 427-479 427-487 (617)
84 PF14364 DUF4408: Domain of un 23.9 41 0.00089 21.5 0.9 20 466-485 13-32 (34)
85 PF01034 Syndecan: Syndecan do 23.8 29 0.00063 25.6 0.2 24 15-38 21-44 (64)
86 PF12273 RCR: Chitin synthesis 23.7 67 0.0014 27.4 2.5 9 21-29 15-23 (130)
87 PF15179 Myc_target_1: Myc tar 23.2 1.3E+02 0.0029 27.2 4.2 33 6-38 24-56 (197)
88 PF00322 Endothelin: Endotheli 23.1 27 0.00058 21.6 -0.1 6 358-363 23-28 (31)
89 PF08946 Osmo_CC: Osmosensory 22.8 1.1E+02 0.0023 21.0 2.7 19 293-311 16-34 (46)
90 KOG0132 RNA polymerase II C-te 22.4 45 0.00097 36.8 1.4 68 192-264 412-479 (894)
91 COG0724 RNA-binding proteins ( 22.4 1.2E+02 0.0027 28.2 4.5 35 319-353 156-192 (306)
92 CHL00031 psbT photosystem II p 21.8 1.3E+02 0.0028 19.0 2.7 26 476-504 7-32 (33)
93 KOG3048 Molecular chaperone Pr 21.7 1.1E+02 0.0024 26.6 3.3 25 288-312 100-124 (153)
94 TIGR02976 phageshock_pspB phag 21.4 3E+02 0.0064 21.2 5.3 39 428-466 7-45 (75)
95 KOG0131 Splicing factor 3b, su 21.3 79 0.0017 28.7 2.5 22 320-341 51-72 (203)
96 KOG2202 U2 snRNP splicing fact 20.7 2.2E+02 0.0047 27.4 5.3 25 319-343 109-133 (260)
97 PF07284 BCHF: 2-vinyl bacteri 20.6 5.5E+02 0.012 22.1 7.1 60 420-488 12-71 (139)
98 PF09446 VMA21: VMA21-like dom 20.5 3.7E+02 0.0079 20.0 5.8 50 433-482 10-62 (66)
No 1
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=100.00 E-value=3.2e-86 Score=686.89 Aligned_cols=476 Identities=26% Similarity=0.445 Sum_probs=426.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccccccccccCCC-CCCCCCCcccccccccccccccccccchhhhcC
Q 010634 3 TLADIGVSAALNILGAFIFLIAFAILRLQPFNDRVYFPKWYLKGLR-DSPTHGGAFVRKFVNLDFRSYIRFLNWMPEALK 81 (505)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~F~~lR~~~~~~~iY~pr~~~~~~~-~~p~~~~~~~~~~~~l~~~~~~~~~~Wi~~~~~ 81 (505)
+.++++|+++++..++++++++|++||+| ++++|+||+..++.+ +.| ++.|+|+|||+.++++
T Consensus 20 s~~~~~t~l~f~~~~~~~~l~~f~iLR~r--~k~lY~pr~~~~~~~~~~P--------------~~~~ss~~gWl~~L~~ 83 (827)
T COG5594 20 STSAVITQLVFAGLIFLVFLILFLILRKR--WKRLYAPRTNFDGQNECLP--------------EPNPSSYWGWLEPLVK 83 (827)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHH--HhHhcCcceeecCCCcccC--------------CCCccchHHHHHHHHh
Confidence 47899999999999999999999999986 899999999877643 223 3567899999999999
Q ss_pred CChhHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhhhcceeeeCCCccccccccCcCCCccccccccCcCCCCchHHH
Q 010634 82 MPEPELIEHAGLDSAVYLRIYLIGLKIFVPIALVAWSVLVPVNWTNDTLDVAVKISNVTASDIDKLSISNVPLKSQRFWT 161 (505)
Q Consensus 82 ~~~~~i~~~~GlDa~~~lrfl~~~~~~f~~~~~~~~~iLlPvn~~~~~~~~~~~~~~~~~~~l~~~TisNv~~~s~~lw~ 161 (505)
++|+.+++++|+|||+||||+|||+++++++|+++++||+|+|++.++..+.. .-..++++++|++|+.+ ++++|+
T Consensus 84 i~d~~~l~~aGlD~y~fLrflkm~~~~~~i~sl~~ipIL~Pvn~~~~~~~~gn---~~s~s~l~~Ls~~Nv~~-~n~~~a 159 (827)
T COG5594 84 IPDEFLLQYAGLDGYFFLRFLKMLIKLLFILSLILIPILLPVNYHFQKATNGN---SDSESGLDKLSISNVSP-SNRLYA 159 (827)
T ss_pred CCHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHhHEeeeeeecccccccCC---ccchhhhhHhhhhcccC-CCceee
Confidence 99999999999999999999999999999999999999999998875443210 11358999999999986 789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---------CCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCc
Q 010634 162 HVVMAYAFTFWTCYVLLKEYEKVANLRLQFVASEKR---------RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNH 232 (505)
Q Consensus 162 h~i~~~l~~~~~~~~l~~e~~~~~~~R~~~l~~~~~---------~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~ 232 (505)
|++..|++.++++|.+++|++.|+.+||++++++.. +.++||+++++||.+... .+.+.++|+++..++
T Consensus 160 Hvf~~~~f~~~vlfii~~el~~y~~lr~a~~~~p~y~qs~~~~~~~~ssRTvlis~LP~~~~~--~e~L~~~~~kl~~~~ 237 (827)
T COG5594 160 HVFLSWFFFGYVLFIIFRELRFYVVLRQAYLRSPLYQQSLLTLQNNLSSRTVLISGLPSELRS--DEELKELFDKLKVGE 237 (827)
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHhhccCCCCceEEeecCChhhcC--chhHHHHHhhcCeee
Confidence 999999999999999999999999999999998752 348999999999997633 245888999988888
Q ss_pred eeeeEeEecchhHHHHHHHHHHHHHHHHHHHH-------hh-----hc--------------------CCCCCCcccccc
Q 010634 233 YLTHQVVVNANKLAKLVKKKKKLQNWLDYYQL-------KY-----SR--------------------NNSKRPMMKTGF 280 (505)
Q Consensus 233 v~~v~i~~d~~~L~~l~~~r~~~~~~le~~~~-------k~-----~k--------------------~~~~rp~~k~~~ 280 (505)
+.+..+|||.+.|++++++|++..+++|.+.+ |. .| ...+||++|.+-
T Consensus 238 i~~~~l~~~~~~l~~l~k~R~ki~~klE~~~~~~~~~~~K~~~~~~~K~~~~L~~~~~k~~~~~~~y~~~~~Rp~~~i~k 317 (827)
T COG5594 238 IDSDVLCRDLGTLQELYKERDKILKKLEKALNELLNKLLKKSHLKTNKKSGKLTPSRKKEFEILPEYVPDKKRPKHRIKK 317 (827)
T ss_pred eccchhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCCCCCCcccccchhhhhhccccccchhhhhh
Confidence 98999999999999999999999999884321 11 01 013589888765
Q ss_pred c--cCCCCcccHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeCCHHHHHHHHHhcccCCCCCce-eeeCCCCC
Q 010634 281 L--GLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTRNPTLWL-TEWASEPR 357 (505)
Q Consensus 281 ~--~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~~~~~~-v~~APeP~ 357 (505)
. ++.|+|||+|||+++++.+++++|++.|+...... ++++|||||+|+..||+|+|.+.++++.... ++.||+|+
T Consensus 318 ~~~~i~gKkVdaI~y~s~~l~~l~~~i~~~r~~~~~~t--~~~~~FItFkSq~~Aq~~aQ~~~~sr~~~~~~v~iapaPn 395 (827)
T COG5594 318 LNKGIFGKKVDAIDYYSAKLTKLDAEIENARKSLYENT--PTKSGFITFKSQASAQIAAQSQIYSRVLGKLKVEIAPAPN 395 (827)
T ss_pred hhhhhccceecHHHHHHHHHHHHHHHHHHHHhCccccC--ccccEEEEEehhHHHHHHHHhhhhhhhhcceeeeecCCcc
Confidence 5 67899999999999999999999999999865543 4679999999999999999999999987766 99999999
Q ss_pred CeecCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHhhcccchhh-hhchhHHHHHHhhhHHHHHHH
Q 010634 358 DVYWQNLAIPYVSLSVRRLIMGVAFFFLTFFFMIPIAIVQSFASIEGIEKAVPFLKPV-IEAKFIKSVIQGFLPGIALKL 436 (505)
Q Consensus 358 DIiW~NL~~s~~~r~~R~~~~~~~~~~liif~~iPva~v~~l~~~~~l~~~~p~l~~~-~~~~~~~~~i~~~lP~l~l~~ 436 (505)
||+|+|+..++++|..+++.+++++++++++|++|||+|+.++|+++|++.+||++.+ .+.|+++++++|+||++++.+
T Consensus 396 Di~W~Nl~ls~~~r~~k~~~~ni~~il~II~w~~pVa~v~~i~Nl~~l~~~~p~l~~il~~~~~l~~iltglLptv~~~~ 475 (827)
T COG5594 396 DIIWDNLRLSRKERLFKRISANILFILLIILWAFPVAFVGTISNLNTLSSLWPFLKFILKDPPFLAGILTGLLPTVALSL 475 (827)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHhhhhHHHHHHHhccHHHHHHHHhhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 566799999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcchhHHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHhcccccccC
Q 010634 437 FLIFLPTILMIMSKFEGFISLSSLERRAATRYYLFNFVNVFLGSIIAGTAFEQLNSFLKQSANEYVA 503 (505)
Q Consensus 437 ~~~llP~ii~~ls~~eg~~T~S~~~~s~~~k~f~fl~~n~flv~~i~~s~~~~l~~~~~~p~~~i~~ 503 (505)
++.++|+++++++++||..|+|+.|+.++.|||.|+|+|+|+|++++|++.+.+.+++++| .||++
T Consensus 476 l~~ivP~fir~Ls~~qG~~S~se~E~~~~~k~~~f~fv~~FlV~Tl~s~fss~v~~~~ke~-~s~~~ 541 (827)
T COG5594 476 LMSIVPYFIRWLSYMQGLVSYSEEEIYVQNKYFAFLFVNLFLVVTLASSFSSIVWSLLKEP-TSIMT 541 (827)
T ss_pred HHHHhHHHHHHHHHhcCccchHHHHHHHHhhhhhheeeeehheeeehhHHHHHHHHHhcCh-HhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 78875
No 2
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=100.00 E-value=3.4e-83 Score=687.31 Aligned_cols=485 Identities=50% Similarity=0.842 Sum_probs=440.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccccccccccCCCCCCCCCCccccccccccccccccc-ccchhhh
Q 010634 1 MATLADIGVSAALNILGAFIFLIAFAILRLQPFNDRVYFPKWYLKGLRDSPTHGGAFVRKFVNLDFRSYIRF-LNWMPEA 79 (505)
Q Consensus 1 ~~~~~~~~~~l~~~~~~~~~~~~~F~~lR~~~~~~~iY~pr~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~-~~Wi~~~ 79 (505)
||+.+++..+-.++...+..++.+|.+++.++++.++|.|++.+.+.+..|..... .+.+++. |+|+.++
T Consensus 1 ~~~~~~~~~~s~~~~~~~~~~~~~~~~l~l~~~~~~vy~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~Wl~~~ 71 (728)
T KOG1134|consen 1 MATFESIGISSTLNLNSAFAFLFLFLFLRLQPRNFRVYLPIWSLKGLRSSPIESKV---------EPVPSSVNFGWLPAL 71 (728)
T ss_pred CCccccccccccccchhhHHHHHHHHHHHhhhcceEEEEeeeeeccccCcCccccC---------CCCCCcccccchHHH
Confidence 67777777777778888888888888888888899999999998877654432211 1234455 9999999
Q ss_pred cCCChhHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhhhcceeeeCCCccccccccCcCCCccccccccCcCCCCchH
Q 010634 80 LKMPEPELIEHAGLDSAVYLRIYLIGLKIFVPIALVAWSVLVPVNWTNDTLDVAVKISNVTASDIDKLSISNVPLKSQRF 159 (505)
Q Consensus 80 ~~~~~~~i~~~~GlDa~~~lrfl~~~~~~f~~~~~~~~~iLlPvn~~~~~~~~~~~~~~~~~~~l~~~TisNv~~~s~~l 159 (505)
++++|+|++++||+||++||||+++++++|+++++++++||+|+|+++++.+..+ .++++++|++|++++++++
T Consensus 72 ~k~~~~ei~~~~GlDa~~~L~~~~~~~~lf~~~~~l~~~illPVn~~~~~~~~~~------~~s~~~ls~snv~~~s~~l 145 (728)
T KOG1134|consen 72 LKIPDEEILEHAGLDAYVFLRFLKLGIKLFAVLSLLSVPILLPVNWTNGNLELGN------EDSLDKLSISNVQPGSSLL 145 (728)
T ss_pred hcCCHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhheEEeeEEEecCcccccc------cchhhhhhheeccCCCCCE
Confidence 9999999999999999999999999999999999999999999999999876431 1279999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeE
Q 010634 160 WTHVVMAYAFTFWTCYVLLKEYEKVANLRLQFVASEKRRPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (505)
Q Consensus 160 w~h~i~~~l~~~~~~~~l~~e~~~~~~~R~~~l~~~~~~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (505)
|+|++++|++++++++++++||+++...|++|+.++...+++.|+++.++|...+.+..+.++++|+..+|.++.+++++
T Consensus 146 w~Hv~~~y~~~~~~~~~l~~e~~~~~~~R~~~l~~~~~~~~~~s~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 225 (728)
T KOG1134|consen 146 WAHVFFTYLFTFFTLFILYREYKHVASIRQAYLASPKYRPDQSSVLVRNVPPPDGVSVSVIVRHFFSLNHPVKVRSHQVV 225 (728)
T ss_pred EEEeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcCccccchhhhcccCCCCCchhhHHhhhhhccCCceeehhHHH
Confidence 99999999999999999999999999999999999999999999999999965555556778889988889999999999
Q ss_pred ecchhHHHHHHHHHHH-HHHHHHHHHhhhcCCCCCCccccccccCCCCcccHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 010634 240 VNANKLAKLVKKKKKL-QNWLDYYQLKYSRNNSKRPMMKTGFLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKA 318 (505)
Q Consensus 240 ~d~~~L~~l~~~r~~~-~~~le~~~~k~~k~~~~rp~~k~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~ 318 (505)
||..++.++.++++++ ++++.+...+..++..+||++|.++|+++|+|||||+||++|+++++++|+++|+....+.
T Consensus 226 ~~~~~l~~l~~~~~k~~~~~l~~~~~~~~~~~~~rP~~k~~~~~l~gkkvdai~yy~~kl~~l~~~i~~~~~~~~~~~-- 303 (728)
T KOG1134|consen 226 YNESKLSKLLSKLKKLRENKLYKEHKRLKSNPKKRPKRKLGFCGLFGKKVDAIDYYSEKLQELSEDIEELRESLYEEK-- 303 (728)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHhhhhhccccccCCcceeeeeeeecceecHHHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 9999999999999999 4444444444444434799999999999999999999999999999999999999977662
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccCCCCCceeeeCCCCCCeecCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010634 319 IMPAAFVSFNSRWGAAVCAQTQQTRNPTLWLTEWASEPRDVYWQNLAIPYVSLSVRRLIMGVAFFFLTFFFMIPIAIVQS 398 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~~~~~~~v~~APeP~DIiW~NL~~s~~~r~~R~~~~~~~~~~liif~~iPva~v~~ 398 (505)
..+.|||||+|+.+|+.|+|..++.++..|.++.||||+||.|+|+..+..+|+.|+++++++++++++||++|+|+|++
T Consensus 304 ~~~~aFVtf~sr~~A~~~aq~~~~~~~~~w~~~~APeP~Di~W~nl~i~~~~~~~~~~~~~~~~~~li~f~~iPva~V~~ 383 (728)
T KOG1134|consen 304 PLPAAFVTFKSRYGAAVAAQTQQSLNPTKWLTEFAPEPRDIYWDNLAISYVERYLRRFLVNVALFLLLFFWIIPVAFVQA 383 (728)
T ss_pred CCceEEEEEEeeHHHHHHHHhhhcCCCCceEEEecCCcccceecccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhhHHhhcccchhhhhchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHhHHHHHHHHHHHH
Q 010634 399 FASIEGIEKAVPFLKPVIEAKFIKSVIQGFLPGIALKLFLIFLPTILMIMSKFEGFISLSSLERRAATRYYLFNFVNVFL 478 (505)
Q Consensus 399 l~~~~~l~~~~p~l~~~~~~~~~~~~i~~~lP~l~l~~~~~llP~ii~~ls~~eg~~T~S~~~~s~~~k~f~fl~~n~fl 478 (505)
++|++.|++.+||++.+.+.++++++|+|+||++++.++++++|.++++++++|||.|+|+.|++.+.|||+|+++|+|+
T Consensus 384 l~nl~~l~~~~Pflk~i~~~~~i~~vI~gfLP~l~l~~~~~~lP~~l~~ls~~eG~~s~S~~e~~a~~k~~~F~~~nvFl 463 (728)
T KOG1134|consen 384 LTNLEGLSKVFPFLKPILEMKFISSVITGFLPTLALVIFLALLPPFLRYLSKLEGLISRSEEERSALNKYYIFLLVNVFL 463 (728)
T ss_pred HHhhhhhhhccchhhhhhhcchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHhHHHHHHhhhHH
Confidence 99999999999999999777999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHhHHHHHHHHHhcccccccC
Q 010634 479 GSIIAGTAFEQLNSFLKQSANEYVA 503 (505)
Q Consensus 479 v~~i~~s~~~~l~~~~~~p~~~i~~ 503 (505)
+++++||.+.++.+++++| .+||.
T Consensus 464 ~~~l~~sa~~~~~~~l~~p-~~i~~ 487 (728)
T KOG1134|consen 464 VVTLSGSALRQLLSILSTP-RLIPK 487 (728)
T ss_pred HhhhhHHHHHHHHHHhcCH-hHHHH
Confidence 9999999999999999998 78875
No 3
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=100.00 E-value=1.3e-36 Score=306.18 Aligned_cols=180 Identities=34% Similarity=0.652 Sum_probs=173.5
Q ss_pred EEEEeCCHHHHHHHHHhcccCCCCCceeeeCCCCCCeecCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 010634 323 AFVSFNSRWGAAVCAQTQQTRNPTLWLTEWASEPRDVYWQNLAIPYVSLSVRRLIMGVAFFFLTFFFMIPIAIVQSFASI 402 (505)
Q Consensus 323 AFVtF~s~~~a~~a~q~~~~~~~~~~~v~~APeP~DIiW~NL~~s~~~r~~R~~~~~~~~~~liif~~iPva~v~~l~~~ 402 (505)
|||||+++++|+.|+|...+++|++|.+++||||+||+||||+.+..+|..|++++++++++++++|++|++++++++|+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~~~~~~~l~i~~~ipv~~v~~l~~l 80 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIVNILLFLLIIFWTIPVAFVSALSNL 80 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCCCcccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhcccchhh-hhchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHhHHHHHHHHHHHHHHH
Q 010634 403 EGIEKAVPFLKPV-IEAKFIKSVIQGFLPGIALKLFLIFLPTILMIMSKFEGFISLSSLERRAATRYYLFNFVNVFLGSI 481 (505)
Q Consensus 403 ~~l~~~~p~l~~~-~~~~~~~~~i~~~lP~l~l~~~~~llP~ii~~ls~~eg~~T~S~~~~s~~~k~f~fl~~n~flv~~ 481 (505)
+++++..|++++. ++++.+.++++|++|+++++++|+++|.++++++++|||.|+|+.|+++++|+|+||++|++++++
T Consensus 81 ~~l~~~~~~l~~~~~~~~~~~~~i~~~lp~l~l~~~~~llp~ii~~ls~~e~~~s~S~~~~sv~~k~f~f~~~n~~lv~~ 160 (325)
T PF02714_consen 81 DTLKKVIPFLQWIISFSPWLLSLIQGILPSLLLSIFNALLPIIIRFLSKFEGHKSRSEVERSVLRKLFFFLFFNVFLVPS 160 (325)
T ss_pred cchhccchhhHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 456678899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhHHHHHHHHHhcccccccC
Q 010634 482 IAGTAFEQLNSFLKQSANEYVA 503 (505)
Q Consensus 482 i~~s~~~~l~~~~~~p~~~i~~ 503 (505)
+++++++.+++++++| .+|++
T Consensus 161 l~~~~~~~~~~~~~~~-~~i~~ 181 (325)
T PF02714_consen 161 LAGTILSALKNIINNP-GSILQ 181 (325)
T ss_pred hhHHHHHHHHHHHhCc-chHHH
Confidence 9999999999999999 67764
No 4
>PF13967 RSN1_TM: Late exocytosis, associated with Golgi transport
Probab=100.00 E-value=4.2e-36 Score=269.03 Aligned_cols=156 Identities=36% Similarity=0.663 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccccccccccC-CCCCCCCCCcccccccccccccccccccchhhhcCCCh
Q 010634 6 DIGVSAALNILGAFIFLIAFAILRLQPFNDRVYFPKWYLKG-LRDSPTHGGAFVRKFVNLDFRSYIRFLNWMPEALKMPE 84 (505)
Q Consensus 6 ~~~~~l~~~~~~~~~~~~~F~~lR~~~~~~~iY~pr~~~~~-~~~~p~~~~~~~~~~~~l~~~~~~~~~~Wi~~~~~~~~ 84 (505)
++++++++|++++++++++|+++|++ ++++|+||...++ ....|+ ++.++|+|+|++++++++|
T Consensus 1 s~~~sl~~~~~i~~~~~~~F~~lR~~--~~~iY~pR~~~~~~~~~~~~-------------~~~~~g~f~Wi~~~~~~~d 65 (157)
T PF13967_consen 1 SFLTSLAINLIIFLVLLLLFCILRKR--FPRIYQPRSYLPHPEPERPP-------------PLPSRGFFGWIKPVFKISD 65 (157)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc--cHHhcccccccCCcccccCC-------------CCCCCCchHHHHHHHcCCH
Confidence 58899999999999999999999986 7899999998753 111111 1234799999999999999
Q ss_pred hHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhhhcceeeeCCCccccccccCcCCCccccccccCcCCCCchHHHHHH
Q 010634 85 PELIEHAGLDSAVYLRIYLIGLKIFVPIALVAWSVLVPVNWTNDTLDVAVKISNVTASDIDKLSISNVPLKSQRFWTHVV 164 (505)
Q Consensus 85 ~~i~~~~GlDa~~~lrfl~~~~~~f~~~~~~~~~iLlPvn~~~~~~~~~~~~~~~~~~~l~~~TisNv~~~s~~lw~h~i 164 (505)
+|++++||+||++|+||+|+++++|+++++++++||+|+|++|++.+... ...++++++|++|++++++++|+|++
T Consensus 66 ~~i~~~~GlDa~~flrflr~~~~~f~~~~i~~~~vLlPi~~~~~~~~~~~----~~~~~l~~~tisnv~~~s~~lw~h~v 141 (157)
T PF13967_consen 66 DEILRHCGLDAYVFLRFLRMLIKIFLFLSILSLPVLLPINYTGGDDDGDS----DNESGLDRLTISNVPKGSSRLWAHVV 141 (157)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHheeeeEEeCCCCcccc----ccccccccccHHhhcCCCCeehHHHH
Confidence 99999999999999999999999999999999999999999998875321 11279999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 010634 165 MAYAFTFWTCYVLLKE 180 (505)
Q Consensus 165 ~~~l~~~~~~~~l~~e 180 (505)
++|++++++++++++|
T Consensus 142 ~~~i~~~~~~~~l~~E 157 (157)
T PF13967_consen 142 FAYIFTFYVLYLLWRE 157 (157)
T ss_pred HHHHHHHHHHhhheeC
Confidence 9999999999999875
No 5
>PF14703 DUF4463: Domain of unknown function (DUF4463)
Probab=99.02 E-value=5.4e-10 Score=89.26 Aligned_cols=65 Identities=43% Similarity=0.689 Sum_probs=52.0
Q ss_pred eEecchhHHHHHHHHHHHHHHHHHHHHhhhcCC-------------------CCCCccccccccCCC-CcccHHHHHHHH
Q 010634 238 VVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNN-------------------SKRPMMKTGFLGLWG-EKVDGIDYHISE 297 (505)
Q Consensus 238 i~~d~~~L~~l~~~r~~~~~~le~~~~k~~k~~-------------------~~rp~~k~~~~~~~g-~kvdai~~~~~~ 297 (505)
++||+++|++|+++|++++++||.+..++.+.+ ..||.++.+++|++| ++||||+||++|
T Consensus 1 i~rd~~~L~~Lv~~R~~~~~kLE~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kVDaIdyy~~e 80 (85)
T PF14703_consen 1 ICRDWSKLEKLVEEREKAVRKLESAESKYLKNANKRPKKRPKKKKKSESSSNKKRPRHRTGFLGLFGGKKVDAIDYYREE 80 (85)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCccccCccccccccCCCCCCCcCCCCCCCcchHHHHHHHH
Confidence 579999999999999999999997654443221 124455558888888 999999999999
Q ss_pred HHHHH
Q 010634 298 IEKLS 302 (505)
Q Consensus 298 l~~l~ 302 (505)
+++|+
T Consensus 81 l~~Ln 85 (85)
T PF14703_consen 81 LKELN 85 (85)
T ss_pred HHHhC
Confidence 99874
No 6
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=97.45 E-value=0.0023 Score=67.64 Aligned_cols=61 Identities=18% Similarity=0.325 Sum_probs=49.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHhHHHHHHHHHHHHHHHh
Q 010634 422 KSVIQGFLPGIALKLFLIFLPTILMIMSKFEGFISLSSLERRAATRYYLFNFVNVFLGSII 482 (505)
Q Consensus 422 ~~~i~~~lP~l~l~~~~~llP~ii~~ls~~eg~~T~S~~~~s~~~k~f~fl~~n~flv~~i 482 (505)
.+++.+++-++.+.+++.+.-.+..+++++|.|.|.++.|.|...|.|.|+|+|.+.....
T Consensus 162 ~~~~~~vl~~v~i~il~~iy~~~a~~Lt~~EnhrT~~~ye~sli~K~F~f~fvn~y~~Lfy 222 (452)
T PF04547_consen 162 ASLIPTVLNAVVILILNFIYRKLAKKLTDWENHRTESEYENSLIIKVFLFQFVNSYAPLFY 222 (452)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566667777778888999999999999999999999999999999875443
No 7
>KOG2513 consensus Protein required for meiotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=97.02 E-value=0.011 Score=62.03 Aligned_cols=109 Identities=19% Similarity=0.320 Sum_probs=77.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHhhcccchhhhhchhHHHHHHhhhHHHHHHHHHHHHHHHH
Q 010634 366 IPYVSLSVRRLIMGVAFFFLTFFFMIPIAIVQSFASIEGIEKAVPFLKPVIEAKFIKSVIQGFLPGIALKLFLIFLPTIL 445 (505)
Q Consensus 366 ~s~~~r~~R~~~~~~~~~~liif~~iPva~v~~l~~~~~l~~~~p~l~~~~~~~~~~~~i~~~lP~l~l~~~~~llP~ii 445 (505)
.+.|.|..|+..+.+-+++++++...++.+...-.+.- .......| ..-+-.++|++++.++..++-.+-
T Consensus 261 yp~w~~~~~~~~vsvPv~l~c~~i~l~f~l~~f~ie~~--------~~s~~~~~--~~sils~lP~iv~~~li~~~t~~Y 330 (647)
T KOG2513|consen 261 YPEWKRILRRYLVSVPVILLCLCILLSFMLYCFQIEVW--------VLSDYGGP--LISILSYLPTIVYAVLIPVLTRIY 330 (647)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999988888888877777776665432221 11122233 222446788888877766655554
Q ss_pred H----HHHhhcCCcchhHHHHHHHhHHHHHHHHHHHHHHHhhH
Q 010634 446 M----IMSKFEGFISLSSLERRAATRYYLFNFVNVFLGSIIAG 484 (505)
Q Consensus 446 ~----~ls~~eg~~T~S~~~~s~~~k~f~fl~~n~flv~~i~~ 484 (505)
+ ++.++|-|.|+|.++.+...|.+.|+|+|.++--...+
T Consensus 331 ~k~Ae~Lt~~EN~r~~s~y~~hli~K~~lf~f~nsy~sLFyi~ 373 (647)
T KOG2513|consen 331 KKLAEFLTKLENHRLESAYQKHLIAKVFLFNFVNSYLSLFYIA 373 (647)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 55588999999999999999999999999998554433
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=96.79 E-value=0.0057 Score=61.85 Aligned_cols=40 Identities=13% Similarity=0.162 Sum_probs=32.4
Q ss_pred CCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEecc
Q 010634 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNA 242 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~ 242 (505)
..+..||.|.|||.+.++ +.|+++|+.. +.|.++.++.|.
T Consensus 104 ~~~~~~LfVgnLp~~~te---~~L~~lF~~~--G~V~~v~i~~d~ 143 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTD---RELYALFRTI--GPINTCRIMRDY 143 (346)
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEecC
Confidence 456789999999999875 7788999876 458888888774
No 9
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=95.80 E-value=0.093 Score=46.08 Aligned_cols=36 Identities=11% Similarity=0.161 Sum_probs=27.1
Q ss_pred CcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEe
Q 010634 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (505)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (505)
...+|.|.|||.+.++ +.|+++|+.. +.|.++.++.
T Consensus 33 ~~~~lfVgnL~~~~te---~~L~~~F~~~--G~I~~v~i~~ 68 (144)
T PLN03134 33 MSTKLFIGGLSWGTDD---ASLRDAFAHF--GDVVDAKVIV 68 (144)
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHhcC--CCeEEEEEEe
Confidence 3568999999998875 7888888775 4666666543
No 10
>PLN03120 nucleic acid binding protein; Provisional
Probab=95.60 E-value=0.081 Score=50.56 Aligned_cols=34 Identities=24% Similarity=0.210 Sum_probs=26.5
Q ss_pred cceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeE
Q 010634 201 QFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (505)
Q Consensus 201 ~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (505)
.+||.|.|||.+.++ +.|++||+.. |.|.++.+.
T Consensus 4 ~rtVfVgNLs~~tTE---~dLrefFS~~--G~I~~V~I~ 37 (260)
T PLN03120 4 VRTVKVSNVSLKATE---RDIKEFFSFS--GDIEYVEMQ 37 (260)
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEe
Confidence 579999999998775 7789999775 566665553
No 11
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=95.59 E-value=0.11 Score=52.91 Aligned_cols=101 Identities=11% Similarity=0.156 Sum_probs=72.0
Q ss_pred cceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEecchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccc
Q 010634 201 QFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMKTGF 280 (505)
Q Consensus 201 ~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~L~~l~~~r~~~~~~le~~~~k~~k~~~~rp~~k~~~ 280 (505)
..+|+|.|||.+.++ +.|+++|+.. |.|.++.+++|-.
T Consensus 3 ~~~l~V~nLp~~~~e---~~l~~~F~~~--G~i~~v~i~~d~~------------------------------------- 40 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQ---EEIRSLFTSI--GEIESCKLVRDKV------------------------------------- 40 (352)
T ss_pred CcEEEEeCCCCCCCH---HHHHHHHHcc--CCEEEEEEEEcCC-------------------------------------
Confidence 469999999998875 7889999886 5677777765310
Q ss_pred ccCCCCcccHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeCCHHHHHHHHHhcccCC--CCCceeeeCC----
Q 010634 281 LGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTRN--PTLWLTEWAS---- 354 (505)
Q Consensus 281 ~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~AP---- 354 (505)
... ..|.|||+|.+..+|..|...+.... ...+.++.|-
T Consensus 41 --------------------------------~g~---s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~ 85 (352)
T TIGR01661 41 --------------------------------TGQ---SLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSD 85 (352)
T ss_pred --------------------------------CCc---cceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeeccccc
Confidence 000 35899999999999999998766532 2345555442
Q ss_pred --CCCCeecCCCCCChhHHHHHHHHH
Q 010634 355 --EPRDVYWQNLAIPYVSLSVRRLIM 378 (505)
Q Consensus 355 --eP~DIiW~NL~~s~~~r~~R~~~~ 378 (505)
....|+-.||..+..+..++.++.
T Consensus 86 ~~~~~~l~v~~l~~~~~~~~l~~~f~ 111 (352)
T TIGR01661 86 SIKGANLYVSGLPKTMTQHELESIFS 111 (352)
T ss_pred ccccceEEECCccccCCHHHHHHHHh
Confidence 334588889988877777777654
No 12
>PLN03121 nucleic acid binding protein; Provisional
Probab=95.55 E-value=0.094 Score=49.39 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=28.1
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeE
Q 010634 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (505)
+.-|||.|+||+.+.++ +.|++||+.. |.|.++.+.
T Consensus 3 ~~g~TV~V~NLS~~tTE---~dLrefFS~~--G~I~~V~I~ 38 (243)
T PLN03121 3 PGGYTAEVTNLSPKATE---KDVYDFFSHC--GAIEHVEII 38 (243)
T ss_pred CCceEEEEecCCCCCCH---HHHHHHHHhc--CCeEEEEEe
Confidence 34589999999998875 7899999875 667666654
No 13
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=95.45 E-value=0.086 Score=52.99 Aligned_cols=133 Identities=12% Similarity=0.152 Sum_probs=68.4
Q ss_pred CcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEecchhHHH------HHHHHHHHHHHHHHHHHhhhcCCC--
Q 010634 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAK------LVKKKKKLQNWLDYYQLKYSRNNS-- 271 (505)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~L~~------l~~~r~~~~~~le~~~~k~~k~~~-- 271 (505)
+.--+.|-.||+...| +.++++|++. |.|.+|.+.+|-..=.. .+..|+++.+....+.++..-.+.
T Consensus 33 ~~vKlfVgqIprt~sE---~dlr~lFe~y--g~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~ 107 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASE---KDLRELFEKY--GNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHH 107 (510)
T ss_pred hhhhheeccCCccccH---HHHHHHHHHh--CceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCc
Confidence 4446788899998776 5678888876 67888888876432110 012233322222212111100110
Q ss_pred -----------CCCc-cccccccCCCCcccHHHHHHHHHHHHHHH---HHHHHhhccCCCCCCCCeEEEEeCCHHHHHHH
Q 010634 272 -----------KRPM-MKTGFLGLWGEKVDGIDYHISEIEKLSKE---IAEERERVVSDPKAIMPAAFVSFNSRWGAAVC 336 (505)
Q Consensus 272 -----------~rp~-~k~~~~~~~g~kvdai~~~~~~l~~l~~~---I~~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a 336 (505)
.|-. -+.=|.|+..++.. +++++++-.+ |++.+--...+. ...|+|||+|.+.+.|..|
T Consensus 108 pvqvk~Ad~E~er~~~e~KLFvg~lsK~~t-----e~evr~iFs~fG~Ied~~ilrd~~~-~sRGcaFV~fstke~A~~A 181 (510)
T KOG0144|consen 108 PVQVKYADGERERIVEERKLFVGMLSKQCT-----ENEVREIFSRFGHIEDCYILRDPDG-LSRGCAFVKFSTKEMAVAA 181 (510)
T ss_pred ceeecccchhhhccccchhhhhhhcccccc-----HHHHHHHHHhhCccchhhheecccc-cccceeEEEEehHHHHHHH
Confidence 0110 01112233334432 3344444333 233222111222 2679999999999999999
Q ss_pred HHhcccC
Q 010634 337 AQTQQTR 343 (505)
Q Consensus 337 ~q~~~~~ 343 (505)
...+++.
T Consensus 182 ika~ng~ 188 (510)
T KOG0144|consen 182 IKALNGT 188 (510)
T ss_pred HHhhccc
Confidence 9988764
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=95.36 E-value=0.15 Score=55.56 Aligned_cols=166 Identities=15% Similarity=0.136 Sum_probs=85.9
Q ss_pred eEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEecchhHHH------HHHHHHHHHHHHHHHHHhhhcC-------
Q 010634 203 TVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAK------LVKKKKKLQNWLDYYQLKYSRN------- 269 (505)
Q Consensus 203 TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~L~~------l~~~r~~~~~~le~~~~k~~k~------- 269 (505)
||.|.|||.+.+| +.|+++|++. |.|.+|.+++|...=.. .+...+.+++.++....+.-..
T Consensus 2 sl~VgnLp~~vte---~~L~~~F~~~--G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~ 76 (562)
T TIGR01628 2 SLYVGDLDPDVTE---AKLYDLFKPF--GPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMW 76 (562)
T ss_pred eEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeec
Confidence 7999999998875 6788899886 56889999887541100 1233344444444321110000
Q ss_pred CCCCCcccc-c----cccCCCCcccHHHHHHHHHHHHHHH---HHHHHhhccCCCCCCCCeEEEEeCCHHHHHHHHHhcc
Q 010634 270 NSKRPMMKT-G----FLGLWGEKVDGIDYHISEIEKLSKE---IAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQ 341 (505)
Q Consensus 270 ~~~rp~~k~-~----~~~~~g~kvdai~~~~~~l~~l~~~---I~~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~ 341 (505)
....|..+. + +.+-....+|. +.+.++-++ |...+-...... ...|.|||.|.+..+|..|.+.+.
T Consensus 77 s~~~~~~~~~~~~~vfV~nLp~~~~~-----~~L~~~F~~~G~i~~~~i~~~~~g-~skg~afV~F~~~e~A~~Ai~~ln 150 (562)
T TIGR01628 77 SQRDPSLRRSGVGNIFVKNLDKSVDN-----KALFDTFSKFGNILSCKVATDENG-KSRGYGFVHFEKEESAKAAIQKVN 150 (562)
T ss_pred ccccccccccCCCceEEcCCCccCCH-----HHHHHHHHhcCCcceeEeeecCCC-CcccEEEEEECCHHHHHHHHHHhc
Confidence 000111111 0 00101123331 222222221 111111111111 146899999999999999998765
Q ss_pred cCC--CCCceee-----------eCCCCCCeecCCCCCChhHHHHHHHHHH
Q 010634 342 TRN--PTLWLTE-----------WASEPRDVYWQNLAIPYVSLSVRRLIMG 379 (505)
Q Consensus 342 ~~~--~~~~~v~-----------~APeP~DIiW~NL~~s~~~r~~R~~~~~ 379 (505)
... ...+.+. ..+..+.|+-.||..+..+..++.++..
T Consensus 151 g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~ 201 (562)
T TIGR01628 151 GMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAK 201 (562)
T ss_pred ccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHh
Confidence 421 1122221 2234455888999888877777776643
No 15
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=94.82 E-value=0.27 Score=52.99 Aligned_cols=173 Identities=16% Similarity=0.179 Sum_probs=85.2
Q ss_pred CcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEecchhHHH-----HHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 010634 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAK-----LVKKKKKLQNWLDYYQLKYSRNNSKRP 274 (505)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~L~~-----l~~~r~~~~~~le~~~~k~~k~~~~rp 274 (505)
...+|.|.|||.+.+| +.|++.|++. +.|.++.+++|.....+ -+...+.+.+.++.+.....+.+ |.
T Consensus 57 ~~~~lFVgnLp~~~tE---d~L~~~F~~~--G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~G--r~ 129 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYE---DELVPLFEKA--GPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPG--RL 129 (578)
T ss_pred CCCEEEeCCCCCCCCH---HHHHHHHHhh--CCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCC--cc
Confidence 4579999999998876 7788888876 67888888887432211 01222333333332221111000 11
Q ss_pred ccc------cc-cccCCCCcccHHHHHHHHHHHHHHHHHHHHh-hccCCCCCCCCeEEEEeCCHHHHHHHHHhcccCC--
Q 010634 275 MMK------TG-FLGLWGEKVDGIDYHISEIEKLSKEIAEERE-RVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTRN-- 344 (505)
Q Consensus 275 ~~k------~~-~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~-~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~-- 344 (505)
... .. |.+-....++ -+-..+++.+..+.+.+... ....+..+..+.|||+|++..+|..|.+.+...+
T Consensus 130 l~V~~S~~~~rLFVgNLP~~~T-eeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~ 208 (578)
T TIGR01648 130 LGVCISVDNCRLFVGGIPKNKK-REEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQ 208 (578)
T ss_pred ccccccccCceeEeecCCcchh-hHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceE
Confidence 000 00 0000011111 11111122111110000000 0000111246899999999999999987765322
Q ss_pred --CCCceeeeCC-C----------CCCeecCCCCCChhHHHHHHHHHHH
Q 010634 345 --PTLWLTEWAS-E----------PRDVYWQNLAIPYVSLSVRRLIMGV 380 (505)
Q Consensus 345 --~~~~~v~~AP-e----------P~DIiW~NL~~s~~~r~~R~~~~~~ 380 (505)
...+.++.|. + .+-|+=.||..+..+..++..+..+
T Consensus 209 l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f 257 (578)
T TIGR01648 209 LWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEF 257 (578)
T ss_pred ecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhc
Confidence 2334455432 1 1226778888887777788777544
No 16
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=94.70 E-value=0.15 Score=47.56 Aligned_cols=35 Identities=29% Similarity=0.247 Sum_probs=26.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccCCCCCc--eeeeC
Q 010634 319 IMPAAFVSFNSRWGAAVCAQTQQTRNPTLW--LTEWA 353 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~~~~~~--~v~~A 353 (505)
+.|-|||||.+..+|+.|...+.+..-.++ +|+.|
T Consensus 230 ~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 230 SKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 358999999999999999998877654443 44443
No 17
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=94.14 E-value=0.27 Score=49.95 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=27.3
Q ss_pred cceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEec
Q 010634 201 QFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVN 241 (505)
Q Consensus 201 ~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 241 (505)
.++|.|.|||.+.++ +.|+++|+.. |.|.++.+++|
T Consensus 269 ~~~lfV~NL~~~~~e---~~L~~~F~~f--G~v~~v~i~~d 304 (352)
T TIGR01661 269 GYCIFVYNLSPDTDE---TVLWQLFGPF--GAVQNVKIIRD 304 (352)
T ss_pred CcEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEeEc
Confidence 357999999998765 7788888875 56777776653
No 18
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=92.74 E-value=0.31 Score=45.36 Aligned_cols=34 Identities=12% Similarity=0.260 Sum_probs=24.5
Q ss_pred eEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEec
Q 010634 203 TVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVN 241 (505)
Q Consensus 203 TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 241 (505)
-|.|-|+|=++. +|.+++||+.. |+|++.+++.|
T Consensus 14 KifVggL~w~T~---~~~l~~yFeqf--GeI~eavvitd 47 (247)
T KOG0149|consen 14 KIFVGGLAWETH---KETLRRYFEQF--GEIVEAVVITD 47 (247)
T ss_pred EEEEcCcccccc---hHHHHHHHHHh--CceEEEEEEec
Confidence 588889987654 47788888876 66777666643
No 19
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=92.32 E-value=0.7 Score=50.27 Aligned_cols=38 Identities=16% Similarity=0.278 Sum_probs=28.7
Q ss_pred CCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEec
Q 010634 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVN 241 (505)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 241 (505)
....+|.|.|+|.+.++ +.|+++|+.. |.|.++.+..|
T Consensus 176 ~~~~~l~V~nl~~~~te---e~L~~~F~~f--G~i~~~~i~~~ 213 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNE---DKLRELFAKF--GEITSAAVMKD 213 (562)
T ss_pred cCCCeEEEeCCCCcCCH---HHHHHHHHhc--CCEEEEEEEEC
Confidence 34568999999998765 6788888775 56777777665
No 20
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=91.99 E-value=0.84 Score=49.29 Aligned_cols=36 Identities=19% Similarity=0.127 Sum_probs=26.8
Q ss_pred CeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCCC
Q 010634 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP 356 (505)
+.|||.|++.++|..|.+.+... ....+.|+.|..+
T Consensus 270 gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 270 DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 47999999999999999876654 3345667776443
No 21
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=91.88 E-value=0.77 Score=44.83 Aligned_cols=49 Identities=12% Similarity=-0.025 Sum_probs=34.7
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccCCC--CCcee----------eeCCCCCCeecCCCCCCh
Q 010634 320 MPAAFVSFNSRWGAAVCAQTQQTRNP--TLWLT----------EWASEPRDVYWQNLAIPY 368 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~~~--~~~~v----------~~APeP~DIiW~NL~~s~ 368 (505)
.|-+||||++..+|..|.+.++.... .+..| +.-|-|.-.-|.++....
T Consensus 136 KGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATarV~n~K~~v~p~~~g~~~~~a~~ 196 (376)
T KOG0125|consen 136 KGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATARVHNKKKKVLPYPNGWKLLPAVG 196 (376)
T ss_pred CccceEEecChhhHHHHHHHhhcceeeceEEEEeccchhhccCCcccCCCccccccccchh
Confidence 48999999999999999999887522 12222 223566667788887653
No 22
>KOG2514 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.76 E-value=2.5 Score=46.56 Aligned_cols=53 Identities=15% Similarity=0.285 Sum_probs=43.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHhHHHHHHHHHHH
Q 010634 425 IQGFLPGIALKLFLIFLPTILMIMSKFEGFISLSSLERRAATRYYLFNFVNVF 477 (505)
Q Consensus 425 i~~~lP~l~l~~~~~llP~ii~~ls~~eg~~T~S~~~~s~~~k~f~fl~~n~f 477 (505)
.+..+-.+++-++|.+---+..+++.+|.+.|.|+.|-|+.-|.|+|||+|..
T Consensus 435 ~a~~in~~~i~~L~~iy~~~a~~lt~~e~prTe~~~ensl~~KiflfqfvN~y 487 (861)
T KOG2514|consen 435 TAVIINLVVIMILNAIYSNLASRLTNLENPRTESEFENSLILKIFLFQFVNYY 487 (861)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhcCccchhhhcchhHHHHHHHHHHHhc
Confidence 33344445556667777777888999999999999999999999999999965
No 23
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=90.71 E-value=2.6 Score=39.81 Aligned_cols=145 Identities=20% Similarity=0.203 Sum_probs=74.8
Q ss_pred eEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEecchhHHHH-------H--HHHHHHHHHHHH--HHHhhhcCCC
Q 010634 203 TVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKL-------V--KKKKKLQNWLDY--YQLKYSRNNS 271 (505)
Q Consensus 203 TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~L~~l-------~--~~r~~~~~~le~--~~~k~~k~~~ 271 (505)
-+.|.-+|....+ |+++..|... |+++++.+++|--.=+.| + +..+++...|.- +++|.-|-.-
T Consensus 43 NLIvNYLPQ~MTq---dE~rSLF~Si--GeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 43 NLIVNYLPQNMTQ---DELRSLFGSI--GEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred eeeeeecccccCH---HHHHHHhhcc--cceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 4566678988764 7889998764 788999998874311111 1 222333333332 2222222222
Q ss_pred CCCcc---ccccccCCC-CcccHHHHHHHHHHHHHHHHHHH---HhhccCCCCCCCCeEEEEeCCHHHHHHHHHhcccCC
Q 010634 272 KRPMM---KTGFLGLWG-EKVDGIDYHISEIEKLSKEIAEE---RERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTRN 344 (505)
Q Consensus 272 ~rp~~---k~~~~~~~g-~kvdai~~~~~~l~~l~~~I~~~---~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~ 344 (505)
.||.. |..-+-..| .|. .-+++++.+-...-+. |--.........|.+||.|+...+|..|...+..++
T Consensus 118 ARPSs~~Ik~aNLYvSGlPkt----MtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~ 193 (360)
T KOG0145|consen 118 ARPSSDSIKDANLYVSGLPKT----MTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK 193 (360)
T ss_pred ccCChhhhcccceEEecCCcc----chHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC
Confidence 35532 211000001 111 1234444443332111 111111111146899999999999999999999888
Q ss_pred CCC----ceeeeCCCC
Q 010634 345 PTL----WLTEWASEP 356 (505)
Q Consensus 345 ~~~----~~v~~APeP 356 (505)
|.. ..|+.|-.|
T Consensus 194 P~g~tepItVKFannP 209 (360)
T KOG0145|consen 194 PSGCTEPITVKFANNP 209 (360)
T ss_pred CCCCCCCeEEEecCCc
Confidence 754 344555444
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=89.28 E-value=3.4 Score=43.58 Aligned_cols=36 Identities=22% Similarity=0.185 Sum_probs=27.4
Q ss_pred CcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEe
Q 010634 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (505)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (505)
..+||+|.|||.+.++ +.|+++|+.. |.|.+|.++.
T Consensus 88 ~~~~l~V~nlp~~~~~---~~l~~~F~~~--G~v~~v~i~~ 123 (457)
T TIGR01622 88 DDRTVFVLQLALKARE---RDLYEFFSKV--GKVRDVQCIK 123 (457)
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEee
Confidence 4689999999998765 6788888875 4666666653
No 25
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=89.16 E-value=2.3 Score=46.24 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=33.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCCCCCeecC
Q 010634 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPRDVYWQ 362 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP~DIiW~ 362 (505)
.|.|||.|++..+|..|.+.+... ....++|..|..|.|=.|.
T Consensus 246 KGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~~~~~ 290 (612)
T TIGR01645 246 KGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQ 290 (612)
T ss_pred CCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCccccCC
Confidence 589999999999999999887654 3455777777666665564
No 26
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=88.77 E-value=0.75 Score=43.73 Aligned_cols=154 Identities=18% Similarity=0.192 Sum_probs=85.0
Q ss_pred cceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEecchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccc
Q 010634 201 QFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMKTGF 280 (505)
Q Consensus 201 ~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~L~~l~~~r~~~~~~le~~~~k~~k~~~~rp~~k~~~ 280 (505)
-+|+.|-|+..+..| +.+...|+.. |.|.+..+++| ++..... ......+.|+.+.++
T Consensus 6 prtlyvgnld~~vte---~~i~~lf~qi--g~v~~~k~i~~----------------e~~v~wa-~~p~nQsk~t~~~hf 63 (321)
T KOG0148|consen 6 PRTLYVGNLDSTVTE---DFIATLFNQI--GSVTKTKVIFD----------------ELKVNWA-TAPGNQSKPTSNQHF 63 (321)
T ss_pred CceEEeeccChhhHH---HHHHHHHHhc--cccccceeehh----------------hhccccc-cCcccCCCCccccce
Confidence 489999999987765 5677788776 56777778776 1111110 011112245544432
Q ss_pred ccCCCCcccHHHHHHHHHHHHHH---HHHHHHhhccCCCCCCCCeEEEEeCCHHHHHHHHHhccc--------------C
Q 010634 281 LGLWGEKVDGIDYHISEIEKLSK---EIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQT--------------R 343 (505)
Q Consensus 281 ~~~~g~kvdai~~~~~~l~~l~~---~I~~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~--------------~ 343 (505)
.-..|.-+..|+ .++|++.-. +|.+.|--.+....+..|++||+|-+..+|..|.|.... +
T Consensus 64 hvfvgdls~eI~--~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 64 HVFVGDLSPEID--NEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred eEEehhcchhcc--hHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 211222222222 122222211 222222111111113579999999999999999886533 1
Q ss_pred CCCCc----------eeeeCCCCCCeecCCCCCChhHHHHHHHHH
Q 010634 344 NPTLW----------LTEWASEPRDVYWQNLAIPYVSLSVRRLIM 378 (505)
Q Consensus 344 ~~~~~----------~v~~APeP~DIiW~NL~~s~~~r~~R~~~~ 378 (505)
+|..+ .-+-+|.-.-|+=.|+.-...+..+|+.++
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs 186 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFS 186 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcc
Confidence 22111 123477777888888887777778888665
No 27
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=88.75 E-value=0.65 Score=33.16 Aligned_cols=24 Identities=29% Similarity=0.206 Sum_probs=21.1
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC
Q 010634 320 MPAAFVSFNSRWGAAVCAQTQQTR 343 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~ 343 (505)
.+.|||+|.+..+|..|.+.+...
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~ 44 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGR 44 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCC
Confidence 489999999999999999977654
No 28
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=87.46 E-value=7.1 Score=41.77 Aligned_cols=35 Identities=9% Similarity=0.178 Sum_probs=26.5
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccCC--CCCceeeeCC
Q 010634 320 MPAAFVSFNSRWGAAVCAQTQQTRN--PTLWLTEWAS 354 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~AP 354 (505)
.|.|||+|.+..+|+.|.+.+.+.. ...+.+...|
T Consensus 464 ~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~ 500 (509)
T TIGR01642 464 VGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYG 500 (509)
T ss_pred cceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeC
Confidence 5889999999999999999988753 3334444444
No 29
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=86.76 E-value=7.3 Score=41.51 Aligned_cols=35 Identities=9% Similarity=0.096 Sum_probs=24.4
Q ss_pred CcceEEEEcCCC-CCCccHHHHHHHhhhhcCCCceeeeEeE
Q 010634 200 DQFTVLVRNVPP-DPDESVSELVEHFFLVNHPNHYLTHQVV 239 (505)
Q Consensus 200 ~~~TVlV~~IP~-~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (505)
...+|+|.|||. ..++ +.|++.|+.. |.|.++.+.
T Consensus 274 ~~~~l~v~nL~~~~vt~---~~L~~lF~~y--G~V~~vki~ 309 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNC---DRLFNLFCVY--GNVERVKFM 309 (481)
T ss_pred CCCEEEEeCCCCCCCCH---HHHHHHHHhc--CCeEEEEEE
Confidence 457999999997 4554 6788888765 556555443
No 30
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=85.62 E-value=1.2 Score=45.23 Aligned_cols=36 Identities=22% Similarity=0.276 Sum_probs=28.5
Q ss_pred CCCCeEEEEeCCHHHHHHHHHhcccCCCC----CceeeeC
Q 010634 318 AIMPAAFVSFNSRWGAAVCAQTQQTRNPT----LWLTEWA 353 (505)
Q Consensus 318 ~~~~~AFVtF~s~~~a~~a~q~~~~~~~~----~~~v~~A 353 (505)
+..|-|||-+.|-++|.++.|.+..++-. ...|+.|
T Consensus 206 KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWA 245 (506)
T KOG0117|consen 206 KNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWA 245 (506)
T ss_pred cccceEEEEeecchhHHHHHhhccCCceeecCCcceeecc
Confidence 36799999999999999999998877543 3355555
No 31
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=85.30 E-value=1.5 Score=40.71 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=33.9
Q ss_pred CCCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCCCCCCeecC
Q 010634 318 AIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPRDVYWQ 362 (505)
Q Consensus 318 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP~DIiW~ 362 (505)
+..|.|||+|++..+|-.|...+.+. -...|+++.|=+++||+=.
T Consensus 50 KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~ 96 (221)
T KOG4206|consen 50 KMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQ 96 (221)
T ss_pred CccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhc
Confidence 37899999999999988887766553 2345677778888887655
No 32
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=83.12 E-value=6.8 Score=41.28 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=20.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhccc
Q 010634 320 MPAAFVSFNSRWGAAVCAQTQQT 342 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~ 342 (505)
.|.|||+|.+..+|..|.+.+..
T Consensus 228 ~g~afV~f~~~e~A~~A~~~l~g 250 (457)
T TIGR01622 228 KGFGFIQFHDAEEAKEALEVMNG 250 (457)
T ss_pred ceEEEEEECCHHHHHHHHHhcCC
Confidence 58999999999999999987665
No 33
>smart00361 RRM_1 RNA recognition motif.
Probab=82.35 E-value=1.8 Score=32.60 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=21.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC
Q 010634 319 IMPAAFVSFNSRWGAAVCAQTQQTR 343 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~ 343 (505)
..|.|||+|.+..+|..|.+.+.+.
T Consensus 36 ~rG~~fV~f~~~~dA~~A~~~l~g~ 60 (70)
T smart00361 36 KRGNVYITFERSEDAARAIVDLNGR 60 (70)
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCC
Confidence 4689999999999999999987664
No 34
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=81.92 E-value=5.1 Score=43.60 Aligned_cols=36 Identities=11% Similarity=0.003 Sum_probs=27.5
Q ss_pred CcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEe
Q 010634 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (505)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (505)
..++|.|.|||.+.++ +.|+++|+.. |.|.++.+.+
T Consensus 106 ~~~rLfVGnLp~~~tE---e~Lr~lF~~f--G~I~sV~I~~ 141 (612)
T TIGR01645 106 IMCRVYVGSISFELRE---DTIRRAFDPF--GPIKSINMSW 141 (612)
T ss_pred CCCEEEEcCCCCCCCH---HHHHHHHHcc--CCEEEEEEee
Confidence 4579999999998765 7788888875 5576666654
No 35
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=81.59 E-value=6.2 Score=41.39 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHhc
Q 010634 319 IMPAAFVSFNSRWGAAVCAQTQ 340 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~ 340 (505)
..|+|||-|+++.+|+.|....
T Consensus 333 skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 333 SKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred cccceEEEeccHHHHHHHHHhc
Confidence 3699999999999999998764
No 36
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=81.20 E-value=1.6 Score=38.86 Aligned_cols=34 Identities=18% Similarity=0.095 Sum_probs=28.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccCC--CCCceeee
Q 010634 319 IMPAAFVSFNSRWGAAVCAQTQQTRN--PTLWLTEW 352 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~ 352 (505)
+-|.|||.|++..+|..|...|.... ...+.||+
T Consensus 46 PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 46 PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVEL 81 (195)
T ss_pred CCCceEEeccCcccHHHHHhhcCCccccCceEEEEe
Confidence 45999999999999999999988776 45577776
No 37
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=80.05 E-value=4.8 Score=40.85 Aligned_cols=61 Identities=15% Similarity=0.142 Sum_probs=42.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccCC--CCCceeeeC-C-----CCCCeecCCCCCChhHHHHHHHHHH
Q 010634 319 IMPAAFVSFNSRWGAAVCAQTQQTRN--PTLWLTEWA-S-----EPRDVYWQNLAIPYVSLSVRRLIMG 379 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~A-P-----eP~DIiW~NL~~s~~~r~~R~~~~~ 379 (505)
..+.|||+|.++++|..|.+.+.... ...+.++.| | ....|+-.||..+..+.-+|.++..
T Consensus 148 srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~ 216 (346)
T TIGR01659 148 SFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGK 216 (346)
T ss_pred cCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccccccccceeEEeCCCCcccHHHHHHHHHh
Confidence 35899999999999999998765532 344555544 2 2334888888887777777766543
No 38
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=79.23 E-value=1.9 Score=31.72 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=21.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHhccc
Q 010634 319 IMPAAFVSFNSRWGAAVCAQTQQT 342 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~ 342 (505)
..+.|||+|++..+|..|.+.+..
T Consensus 38 ~~~~a~V~F~~~~~a~~a~~~l~g 61 (70)
T PF00076_consen 38 SKGYAFVEFESEEDAEKALEELNG 61 (70)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ccceEEEEEcCHHHHHHHHHHcCC
Confidence 468999999999999999987654
No 39
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=78.61 E-value=2 Score=31.98 Aligned_cols=23 Identities=26% Similarity=0.157 Sum_probs=20.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcc
Q 010634 319 IMPAAFVSFNSRWGAAVCAQTQQ 341 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~ 341 (505)
..+.|||+|.++.+|..|.+...
T Consensus 38 ~~~~a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 38 SRGFAFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHT
T ss_pred cCCEEEEEeCCHHHHHHHHHHCC
Confidence 47899999999999999998764
No 40
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=78.60 E-value=3.4 Score=33.52 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=15.9
Q ss_pred ceEEEEcCCCCCCc-cHHHHHHHh
Q 010634 202 FTVLVRNVPPDPDE-SVSELVEHF 224 (505)
Q Consensus 202 ~TVlV~~IP~~~~~-~~~~~l~~~ 224 (505)
.|||++|||...++ .+.+.+++.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~ 25 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEH 25 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHh
Confidence 49999999998754 344445444
No 41
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=78.45 E-value=3.5 Score=30.27 Aligned_cols=33 Identities=33% Similarity=0.479 Sum_probs=24.9
Q ss_pred EEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEec
Q 010634 204 VLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVN 241 (505)
Q Consensus 204 VlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 241 (505)
|.|.|||.+.++ +.|+++|++. |.+..+.+..+
T Consensus 1 l~v~nlp~~~t~---~~l~~~f~~~--g~i~~~~~~~~ 33 (70)
T PF00076_consen 1 LYVGNLPPDVTE---EELRDFFSQF--GKIESIKVMRN 33 (70)
T ss_dssp EEEESETTTSSH---HHHHHHHHTT--STEEEEEEEEE
T ss_pred cEEcCCCCcCCH---HHHHHHHHHh--hhccccccccc
Confidence 689999998875 7788899885 45566666654
No 42
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=78.08 E-value=5 Score=41.53 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcc
Q 010634 319 IMPAAFVSFNSRWGAAVCAQTQQ 341 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~ 341 (505)
+++-|||.|.++.+|+.|+|-..
T Consensus 144 ~tGEAfVqF~sqe~ae~Al~rhr 166 (510)
T KOG4211|consen 144 PTGEAFVQFESQESAEIALGRHR 166 (510)
T ss_pred cccceEEEecCHHHHHHHHHHHH
Confidence 68999999999999999998643
No 43
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=76.39 E-value=4.7 Score=29.87 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=24.5
Q ss_pred EEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEec
Q 010634 204 VLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVN 241 (505)
Q Consensus 204 VlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 241 (505)
|+|+|||.+.++ +.+.++|+.. +.|.++.+.++
T Consensus 1 v~i~nlp~~~~~---~~l~~~f~~~--g~v~~v~~~~~ 33 (70)
T PF14259_consen 1 VYISNLPPSTTE---EDLRNFFSRF--GPVEKVRLIKN 33 (70)
T ss_dssp EEEESSTTT--H---HHHHHHCTTS--SBEEEEEEEES
T ss_pred CEEeCCCCCCCH---HHHHHHHHhc--CCcceEEEEee
Confidence 689999998764 7788999876 45777777765
No 44
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=72.25 E-value=5.7 Score=38.39 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=26.6
Q ss_pred EEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEecch
Q 010634 204 VLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNAN 243 (505)
Q Consensus 204 VlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~ 243 (505)
+.|-|+|.+.++ .+++..|+.. |+|.++.|+.|.+
T Consensus 5 LFIGNLp~~~~~---~elr~lFe~y--gkVlECDIvKNYg 39 (346)
T KOG0109|consen 5 LFIGNLPREATE---QELRSLFEQY--GKVLECDIVKNYG 39 (346)
T ss_pred hhccCCCcccch---HHHHHHHHhh--CceEeeeeecccc
Confidence 567899987765 5677778775 7888888887766
No 45
>smart00360 RRM RNA recognition motif.
Probab=70.58 E-value=5.7 Score=28.50 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=20.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcc
Q 010634 319 IMPAAFVSFNSRWGAAVCAQTQQ 341 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~ 341 (505)
..+.|||+|++..+|..|.+.+.
T Consensus 37 ~~~~a~v~f~~~~~a~~a~~~~~ 59 (71)
T smart00360 37 SKGFAFVEFESEEDAEKALEALN 59 (71)
T ss_pred CCceEEEEeCCHHHHHHHHHHcC
Confidence 46899999999999999988765
No 46
>smart00362 RRM_2 RNA recognition motif.
Probab=70.18 E-value=6.2 Score=28.49 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=20.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHhccc
Q 010634 319 IMPAAFVSFNSRWGAAVCAQTQQT 342 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~ 342 (505)
..+.|||+|++..+|..|.+.+..
T Consensus 38 ~~~~~~v~f~~~~~a~~a~~~~~~ 61 (72)
T smart00362 38 SKGFAFVEFESEEDAEKAIEALNG 61 (72)
T ss_pred CCceEEEEeCCHHHHHHHHHHhCC
Confidence 468999999999999999887653
No 47
>smart00362 RRM_2 RNA recognition motif.
Probab=69.90 E-value=6.6 Score=28.33 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=23.5
Q ss_pred eEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEec
Q 010634 203 TVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVN 241 (505)
Q Consensus 203 TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 241 (505)
||.|+|||.+.++ +.++++|++. |.+..+.+..+
T Consensus 1 ~v~i~~l~~~~~~---~~l~~~~~~~--g~v~~~~~~~~ 34 (72)
T smart00362 1 TLFVGNLPPDVTE---EDLKELFSKF--GPIESVKIPKD 34 (72)
T ss_pred CEEEcCCCCcCCH---HHHHHHHHhc--CCEEEEEEecC
Confidence 6899999997754 6778888765 34555555543
No 48
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=69.85 E-value=8.8 Score=39.33 Aligned_cols=85 Identities=14% Similarity=0.018 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHH---HHHhhccCCCCCCCCeEEEEeCCHHHHHHHHHhcccC---CCCCceeeeCCCCCCeecCCCCC
Q 010634 293 YHISEIEKLSKEIA---EERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR---NPTLWLTEWASEPRDVYWQNLAI 366 (505)
Q Consensus 293 ~~~~~l~~l~~~I~---~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~---~~~~~~v~~APeP~DIiW~NL~~ 366 (505)
-|+.+|.-+-++|- +.|--.....-...|+|||||.+...|+.|...+.+. ....+.|...-.-.-.+=.|+-.
T Consensus 95 ~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK 174 (506)
T KOG0117|consen 95 VFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPK 174 (506)
T ss_pred ccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCc
Confidence 36677777766653 3332211111125799999999999999999988764 22223333332344555566665
Q ss_pred ChhHHHHHHHH
Q 010634 367 PYVSLSVRRLI 377 (505)
Q Consensus 367 s~~~r~~R~~~ 377 (505)
++.+--++.-+
T Consensus 175 ~k~keeIlee~ 185 (506)
T KOG0117|consen 175 TKKKEEILEEM 185 (506)
T ss_pred cccHHHHHHHH
Confidence 55544444433
No 49
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=68.29 E-value=17 Score=37.96 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=26.5
Q ss_pred ceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEec
Q 010634 202 FTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVN 241 (505)
Q Consensus 202 ~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 241 (505)
++|.|.|||-+..+ +.|.+.|++. |.|.++.++||
T Consensus 19 ~~v~vgnip~~~se---~~l~~~~~~~--g~v~s~~~v~D 53 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSE---EQLLSIFSGV--GPVLSFRLVYD 53 (435)
T ss_pred cceEecCCCCcccH---HHHHHHHhcc--Cccceeeeccc
Confidence 89999999998764 6778888765 45666666654
No 50
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=68.17 E-value=9.7 Score=36.28 Aligned_cols=50 Identities=18% Similarity=0.162 Sum_probs=39.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccCCC-----CCceeeeCCCCCCeecCCCCCChhHHHHHHHHHHH
Q 010634 319 IMPAAFVSFNSRWGAAVCAQTQQTRNP-----TLWLTEWASEPRDVYWQNLAIPYVSLSVRRLIMGV 380 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~~~-----~~~~v~~APeP~DIiW~NL~~s~~~r~~R~~~~~~ 380 (505)
..|+|||-|++..+|+.|...+++++. ..+.|+.| -+.++|.+||.--..
T Consensus 59 sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~A------------DTdkER~lRRMQQma 113 (371)
T KOG0146|consen 59 SKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFA------------DTDKERTLRRMQQMA 113 (371)
T ss_pred CCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEec------------cchHHHHHHHHHHHH
Confidence 469999999999999999999988743 45667766 357899999975443
No 51
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=65.19 E-value=1.6 Score=34.57 Aligned_cols=30 Identities=30% Similarity=0.355 Sum_probs=21.7
Q ss_pred CCCcceEEEEcCCCCCCc-cHHHHHHHhhhh
Q 010634 198 RPDQFTVLVRNVPPDPDE-SVSELVEHFFLV 227 (505)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~-~~~~~l~~~f~~ 227 (505)
.++.+||+|+|||...++ .++|.|+-+|.+
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~LeIhFqK 79 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLEIHFQK 79 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEEEEEec
Confidence 468899999999996543 455666666654
No 52
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=63.35 E-value=12 Score=27.10 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=19.7
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccC
Q 010634 320 MPAAFVSFNSRWGAAVCAQTQQTR 343 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~ 343 (505)
.+.|||+|++..+|+.|.+.+...
T Consensus 40 ~~~~~v~f~s~~~a~~a~~~~~~~ 63 (74)
T cd00590 40 KGFAFVEFEDEEDAEKALEALNGK 63 (74)
T ss_pred ceEEEEEECCHHHHHHHHHHhCCC
Confidence 579999999999999988875543
No 53
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=62.89 E-value=9.9 Score=27.51 Aligned_cols=32 Identities=31% Similarity=0.469 Sum_probs=22.7
Q ss_pred eEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeE
Q 010634 203 TVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (505)
Q Consensus 203 TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (505)
+|+|+|+|.+.++ +.++++|+.. +.+.++.+.
T Consensus 1 ~i~i~~l~~~~~~---~~i~~~~~~~--g~i~~~~~~ 32 (74)
T cd00590 1 TLFVGNLPPDVTE---EDLRELFSKF--GKVESVRIV 32 (74)
T ss_pred CEEEeCCCCccCH---HHHHHHHHhc--CCEEEEEEe
Confidence 5889999998654 6778888775 455555544
No 54
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=62.64 E-value=11 Score=35.16 Aligned_cols=24 Identities=25% Similarity=0.265 Sum_probs=20.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHhccc
Q 010634 319 IMPAAFVSFNSRWGAAVCAQTQQT 342 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~ 342 (505)
+.+.|||||.|...|..|...+.+
T Consensus 76 ~~pvaFatF~s~q~A~aamnaLNG 99 (284)
T KOG1457|consen 76 CKPVAFATFTSHQFALAAMNALNG 99 (284)
T ss_pred ccceEEEEecchHHHHHHHHHhcC
Confidence 458999999999999999887754
No 55
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=55.33 E-value=16 Score=30.91 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCC
Q 010634 12 ALNILGAFIFLIAFAILRLQP 32 (505)
Q Consensus 12 ~~~~~~~~~~~~~F~~lR~~~ 32 (505)
++..+++.++++.|++.|+|+
T Consensus 73 v~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 73 VMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 445556777788889988763
No 56
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=52.65 E-value=39 Score=22.14 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 010634 3 TLADIGVSAALNILGAFIFLIAFAILRLQP 32 (505)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~F~~lR~~~ 32 (505)
|+-+++.+++.-.++-+++++.|.+.|||.
T Consensus 4 s~IaIIv~V~vg~~iiii~~~~YaCcykk~ 33 (38)
T PF02439_consen 4 STIAIIVAVVVGMAIIIICMFYYACCYKKH 33 (38)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 455677788888888888888888888863
No 57
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=50.86 E-value=27 Score=33.31 Aligned_cols=24 Identities=17% Similarity=0.074 Sum_probs=20.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHhccc
Q 010634 319 IMPAAFVSFNSRWGAAVCAQTQQT 342 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~ 342 (505)
..|++||+|.+..++..|......
T Consensus 231 SkgygfVSf~~pad~~rAmrem~g 254 (290)
T KOG0226|consen 231 SKGYGFVSFRDPADYVRAMREMNG 254 (290)
T ss_pred cccceeeeecCHHHHHHHHHhhcc
Confidence 569999999999999988876544
No 58
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=50.27 E-value=1.5e+02 Score=30.12 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=21.0
Q ss_pred CCCCeEEEEeCCHHHHHHHHHhcc
Q 010634 318 AIMPAAFVSFNSRWGAAVCAQTQQ 341 (505)
Q Consensus 318 ~~~~~AFVtF~s~~~a~~a~q~~~ 341 (505)
.++|-|||.|.+.++|..|+|..+
T Consensus 322 rPSGeAFIqm~nae~a~aaaqk~h 345 (508)
T KOG1365|consen 322 RPSGEAFIQMRNAERARAAAQKCH 345 (508)
T ss_pred CcChhhhhhhhhhHHHHHHHHHHH
Confidence 378999999999999999988644
No 59
>KOG3966 consensus p53-mediated apoptosis protein EI24/PIG8 [Signal transduction mechanisms; Defense mechanisms]
Probab=48.86 E-value=1.8e+02 Score=28.22 Aligned_cols=69 Identities=17% Similarity=0.164 Sum_probs=37.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHh---------cccCCCCCceeeeCCCCCCeecCCCCCChhHHHHHHHH--HHHHHHHHHH
Q 010634 319 IMPAAFVSFNSRWGAAVCAQT---------QQTRNPTLWLTEWASEPRDVYWQNLAIPYVSLSVRRLI--MGVAFFFLTF 387 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~---------~~~~~~~~~~v~~APeP~DIiW~NL~~s~~~r~~R~~~--~~~~~~~lii 387 (505)
.-|.+||. ..++.|+++... +-.++|.+-.-++.|||. -..+.+...+ +.+..+-+++
T Consensus 39 ~~gi~~v~-iree~akq~~ee~~~r~~~~vL~~rrp~~~~~k~~~Ep~----------i~k~~F~cc~wngg~~w~s~ll 107 (360)
T KOG3966|consen 39 FKGITFVR-IREEEAKQVKEEPPKRVERTVLMMRRPKQGIFKRPPEPP----------IKKDSFLCCLWNGGAMWISFLL 107 (360)
T ss_pred ccchhhhh-hhHHHHHHhhhcCCchHHHHHHhhcCcccccccCCCCCc----------hHHHHHHHHHHhcchHHHHHHH
Confidence 46788887 455555554332 222566666666777876 3344444433 2334455667
Q ss_pred HHHHHHHHHHH
Q 010634 388 FFMIPIAIVQS 398 (505)
Q Consensus 388 f~~iPva~v~~ 398 (505)
||-+.+-+++.
T Consensus 108 f~~v~ipiL~~ 118 (360)
T KOG3966|consen 108 FWQVCIPILGL 118 (360)
T ss_pred HHHHHHHHHHH
Confidence 77554444554
No 60
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=47.27 E-value=20 Score=29.35 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=22.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccCC
Q 010634 319 IMPAAFVSFNSRWGAAVCAQTQQTRN 344 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~~ 344 (505)
..|+|||+.++..+|..|+..+..-+
T Consensus 56 TrGTAFVVYedi~dAk~A~dhlsg~n 81 (124)
T KOG0114|consen 56 TRGTAFVVYEDIFDAKKACDHLSGYN 81 (124)
T ss_pred cCceEEEEehHhhhHHHHHHHhcccc
Confidence 57999999999999999998776543
No 61
>PLN03074 auxin influx permease; Provisional
Probab=45.99 E-value=30 Score=36.82 Aligned_cols=66 Identities=11% Similarity=0.210 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcchhHHHHH--HHhHHHHHHHHHHHHHHH-----hhHhHHHHHHHHHhcc
Q 010634 432 IALKLFLIFLPTILMIMSKFEGFISLSSLERR--AATRYYLFNFVNVFLGSI-----IAGTAFEQLNSFLKQS 497 (505)
Q Consensus 432 l~l~~~~~llP~ii~~ls~~eg~~T~S~~~~s--~~~k~f~fl~~n~flv~~-----i~~s~~~~l~~~~~~p 497 (505)
+..+.+..++|.++.....++....+...|+- ...+..+-.+.|++++.. ...+.+..+.+++++=
T Consensus 383 ~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~ 455 (473)
T PLN03074 383 LLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQI 455 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhh
Confidence 44455667788888887554332111111111 011222335677776642 2244577777777653
No 62
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=45.24 E-value=41 Score=26.46 Aligned_cols=40 Identities=10% Similarity=0.082 Sum_probs=24.5
Q ss_pred CCeEEEEeCCHHHHHHHHHhcccCCC--CCceeeeCCCCCCe
Q 010634 320 MPAAFVSFNSRWGAAVCAQTQQTRNP--TLWLTEWASEPRDV 359 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~~~~~--~~~~v~~APeP~DI 359 (505)
.++|.|-|.++..|..|..-...... ....++..|.+.|.
T Consensus 39 ~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~r~~ 80 (90)
T PF11608_consen 39 GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKNREF 80 (90)
T ss_dssp TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S---
T ss_pred CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCcccc
Confidence 47999999999999999887665443 55677777776654
No 63
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=42.57 E-value=23 Score=32.59 Aligned_cols=23 Identities=35% Similarity=0.303 Sum_probs=20.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcc
Q 010634 319 IMPAAFVSFNSRWGAAVCAQTQQ 341 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~ 341 (505)
.-|+|||-|++..-|.+|+.+..
T Consensus 91 SKgYAFVEFEs~eVA~IaAETMN 113 (214)
T KOG4208|consen 91 SKGYAFVEFESEEVAKIAAETMN 113 (214)
T ss_pred cCceEEEEeccHHHHHHHHHHhh
Confidence 46899999999999999998743
No 64
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=41.70 E-value=46 Score=25.17 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=28.0
Q ss_pred CeEEEEeCCHHHHHHHHHhcccCCCCCceeeeCCCCCCe
Q 010634 321 PAAFVSFNSRWGAAVCAQTQQTRNPTLWLTEWASEPRDV 359 (505)
Q Consensus 321 ~~AFVtF~s~~~a~~a~q~~~~~~~~~~~v~~APeP~DI 359 (505)
....|||.|..+|-.+-+.+...+- .++..|-|++|
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi---~~~liP~P~~i 37 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI---PVRLIPTPREI 37 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC---cEEEeCCChhc
Confidence 4689999999999988887655433 46677888887
No 65
>COG5438 Predicted multitransmembrane protein [Function unknown]
Probab=41.20 E-value=2.3e+02 Score=28.83 Aligned_cols=56 Identities=27% Similarity=0.348 Sum_probs=37.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHhHHHHHHHHHHHHHHHh
Q 010634 427 GFLPGIALKLFLIFLPTILMIMSKFEGFISLSSLERRAATRYYLFNFVNVFLGSII 482 (505)
Q Consensus 427 ~~lP~l~l~~~~~llP~ii~~ls~~eg~~T~S~~~~s~~~k~f~fl~~n~flv~~i 482 (505)
.+..+++-.++..++-++.-++++.+|..+....+.....+..-.-|-+.+++.++
T Consensus 207 A~~~Ti~~~~ls~il~~~~i~~~~l~G~~~E~~~~l~~~~~~v~i~~~~~~~~~vi 262 (385)
T COG5438 207 AFIGTILGTLLSIILAYISIYMTNLSGFGDEDLDELTYLSKNVGINFSGLFLAGVI 262 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhHHHhcCCcccCcchhhhHHHHHH
Confidence 34444555566677888899999999999988888887777643333344444333
No 66
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=39.98 E-value=16 Score=32.94 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=18.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHh
Q 010634 319 IMPAAFVSFNSRWGAAVCAQT 339 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~ 339 (505)
.-+.|||.|++..+|..|..-
T Consensus 44 ~ppfafVeFEd~RDAeDAiyg 64 (241)
T KOG0105|consen 44 PPPFAFVEFEDPRDAEDAIYG 64 (241)
T ss_pred CCCeeEEEecCccchhhhhhc
Confidence 468999999999999998753
No 67
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=39.35 E-value=33 Score=27.82 Aligned_cols=25 Identities=24% Similarity=0.200 Sum_probs=21.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC
Q 010634 319 IMPAAFVSFNSRWGAAVCAQTQQTR 343 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~ 343 (505)
..|+|||-|.+..+|....+..++.
T Consensus 44 N~GYAFVNf~~~~~~~~F~~~f~g~ 68 (97)
T PF04059_consen 44 NLGYAFVNFTSPQAAIRFYKAFNGK 68 (97)
T ss_pred ceEEEEEEcCCHHHHHHHHHHHcCC
Confidence 5899999999999999988876653
No 68
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=36.40 E-value=1.8e+02 Score=25.84 Aligned_cols=42 Identities=19% Similarity=0.259 Sum_probs=21.6
Q ss_pred eCCCCCCe-ecCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010634 352 WASEPRDV-YWQNLAIPYVSLSVRRLIMGVAFFFLTFFFMIPI 393 (505)
Q Consensus 352 ~APeP~DI-iW~NL~~s~~~r~~R~~~~~~~~~~liif~~iPv 393 (505)
.+|+|+|. -|.|--++.--.+--+.+..+++...+..+.-|.
T Consensus 33 a~Pd~~D~~kW~nRVisNLLYyQTNYfv~~it~~~l~~f~sp~ 75 (188)
T KOG4050|consen 33 ARPDFNDFKKWNNRVISNLLYYQTNYFVTFITLFLLHGFISPQ 75 (188)
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCHH
Confidence 48999996 4666555543333334444444443333333343
No 69
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=35.87 E-value=42 Score=35.77 Aligned_cols=35 Identities=20% Similarity=0.091 Sum_probs=27.6
Q ss_pred cceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEe
Q 010634 201 QFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (505)
Q Consensus 201 ~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (505)
++||.|.|||.+.++ +.|++.|+.. |.|.++.++.
T Consensus 2 s~vv~V~nLp~~~te---~~L~~~f~~f--G~V~~v~i~~ 36 (481)
T TIGR01649 2 SPVVHVRNLPQDVVE---ADLVEALIPF--GPVSYVMMLP 36 (481)
T ss_pred ccEEEEcCCCCCCCH---HHHHHHHHhc--CCeeEEEEEC
Confidence 579999999998875 6788888775 5677776664
No 70
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=34.80 E-value=50 Score=31.04 Aligned_cols=36 Identities=25% Similarity=0.244 Sum_probs=26.9
Q ss_pred cceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEec
Q 010634 201 QFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVN 241 (505)
Q Consensus 201 ~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 241 (505)
.+||.|.|||.+.++ +.|.++|.+.. .+.++.+.+|
T Consensus 115 ~~~l~v~nL~~~~~~---~~l~~~F~~~g--~~~~~~~~~d 150 (306)
T COG0724 115 NNTLFVGNLPYDVTE---EDLRELFKKFG--PVKRVRLVRD 150 (306)
T ss_pred CceEEEeCCCCCCCH---HHHHHHHHhcC--ceeEEEeeec
Confidence 489999999988764 77888888764 4555666554
No 71
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=33.11 E-value=55 Score=34.93 Aligned_cols=35 Identities=11% Similarity=0.058 Sum_probs=26.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccCC--CCCceeeeC
Q 010634 319 IMPAAFVSFNSRWGAAVCAQTQQTRN--PTLWLTEWA 353 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~A 353 (505)
..|.|||+|.+..+|..|++.+.... ...+.++.|
T Consensus 336 ~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 336 SKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred cCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 46899999999999999998876542 233555554
No 72
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=32.76 E-value=1.3e+02 Score=28.05 Aligned_cols=37 Identities=14% Similarity=0.301 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 010634 158 RFWTHVVMAYAFTFWTCYVLLKEYEKVANLRLQFVAS 194 (505)
Q Consensus 158 ~lw~h~i~~~l~~~~~~~~l~~e~~~~~~~R~~~l~~ 194 (505)
.+.++++...++.++..+++|.-...+++.|+..+..
T Consensus 50 ~~i~qlInFlIlv~lL~k~l~kPi~~~L~~R~~~I~~ 86 (205)
T PRK06231 50 VFIAHLIAFSILLLLGIFLFWKPTQRFLNKRKELIEA 86 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445655555556666678888899999999987764
No 73
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=32.53 E-value=3.5e+02 Score=34.80 Aligned_cols=22 Identities=5% Similarity=0.271 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010634 376 LIMGVAFFFLTFFFMIPIAIVQ 397 (505)
Q Consensus 376 ~~~~~~~~~liif~~iPva~v~ 397 (505)
.+..++-+++++.|+.|++.+.
T Consensus 650 ~~~~~~pl~~~la~~~~~~~lv 671 (2272)
T TIGR01257 650 ILNRCFPIFMVLAWIYSVSMTV 671 (2272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777888888754
No 74
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=31.68 E-value=72 Score=32.83 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=21.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC
Q 010634 319 IMPAAFVSFNSRWGAAVCAQTQQTR 343 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~ 343 (505)
..|++||+|.+.++|..|...++..
T Consensus 75 s~gcCFv~~~trk~a~~a~~Alhn~ 99 (510)
T KOG0144|consen 75 SKGCCFVKYYTRKEADEAINALHNQ 99 (510)
T ss_pred ccceEEEEeccHHHHHHHHHHhhcc
Confidence 4699999999999999998887754
No 75
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=31.47 E-value=4.4e+02 Score=26.56 Aligned_cols=121 Identities=16% Similarity=0.152 Sum_probs=63.9
Q ss_pred eCCCCCC-eecCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhchhhHHhhcccchhhhhchhHHHHHHhhh
Q 010634 352 WASEPRD-VYWQNLAIPYVSLSVRRLIMGVAFFFLTFFFMIPIAI-VQSFASIEGIEKAVPFLKPVIEAKFIKSVIQGFL 429 (505)
Q Consensus 352 ~APeP~D-IiW~NL~~s~~~r~~R~~~~~~~~~~liif~~iPva~-v~~l~~~~~l~~~~p~l~~~~~~~~~~~~i~~~l 429 (505)
.||-+.= +.|.+|..++.+...-....|.++-++ ..-|.+. .-+..+ .+-| +..
T Consensus 121 lApC~aMVivw~~La~Gd~~~tlv~Va~n~l~qiv---~y~~~~~~~l~v~~--------------~~v~-~~~------ 176 (342)
T COG0798 121 LAPCIAMVIVWSGLAKGDRELTLVLVAFNSLLQIV---LYAPLGKFFLGVIS--------------ISVP-FWT------ 176 (342)
T ss_pred hhhhHHHHHHHHhhccCcHhhhhHHHHHHHHHHHH---HHHHHHHHHHhhcc--------------cccc-HHH------
Confidence 4665544 789999999988766555555443222 2222222 111111 1112 122
Q ss_pred HHHHHHHHHH-HHHHHHHHHHhh--cCCcchhHHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHhcccccc
Q 010634 430 PGIALKLFLI-FLPTILMIMSKF--EGFISLSSLERRAATRYYLFNFVNVFLGSIIAGTAFEQLNSFLKQSANEY 501 (505)
Q Consensus 430 P~l~l~~~~~-llP~ii~~ls~~--eg~~T~S~~~~s~~~k~f~fl~~n~flv~~i~~s~~~~l~~~~~~p~~~i 501 (505)
++.+++.. .+|.+...++|+ ++..-+.-.|.....+.--...+-..+ ++.-=+..+-+.++++| ..|
T Consensus 177 --i~~Sv~lyl~iPli~G~lTR~i~~k~kg~~~~~~~f~p~ispi~ligLl~--TivliF~~qg~~Iv~~p-~~i 246 (342)
T COG0798 177 --IAKSVLLYLGIPLIAGVLTRYILIKKKGREWYESRFLPKISPIALIGLLL--TIVLIFAFQGEQIVEQP-LDI 246 (342)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcChHHHHHHHH--HHHHHHHHhHHHHHhCh-HHH
Confidence 22333334 489999888876 445555557777777776444432222 22222334667788888 444
No 76
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=31.37 E-value=1.1e+02 Score=33.69 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=38.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeCC-------------CCC--CeecCCCCCChhHHHHHHHHH
Q 010634 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS-------------EPR--DVYWQNLAIPYVSLSVRRLIM 378 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP-------------eP~--DIiW~NL~~s~~~r~~R~~~~ 378 (505)
.+|.|||-|.+..+|+.|.+.++.. +.+...++.++ .+. -|+=.|+..-...|-+|.++.
T Consensus 559 SmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~ 635 (725)
T KOG0110|consen 559 SMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFT 635 (725)
T ss_pred ccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHh
Confidence 5799999999999999999987632 23333444333 222 455556655555566666543
No 77
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=29.80 E-value=41 Score=31.06 Aligned_cols=35 Identities=17% Similarity=0.111 Sum_probs=26.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010634 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
.-|.|||-|.+..+|+.|...+... +...+.|++|
T Consensus 54 sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 54 SRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 4689999999999999998876543 3344555554
No 78
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=29.36 E-value=1.1e+02 Score=30.54 Aligned_cols=45 Identities=29% Similarity=0.358 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhccC-------CCCCCCCeEEEEeCCHHHHHHHHHhcccC
Q 010634 298 IEKLSKEIAEERERVVS-------DPKAIMPAAFVSFNSRWGAAVCAQTQQTR 343 (505)
Q Consensus 298 l~~l~~~I~~~~~~~~~-------~~~~~~~~AFVtF~s~~~a~~a~q~~~~~ 343 (505)
+.++++.+.++.++... +.. +-|.|=|+|++...|..|+|+++++
T Consensus 286 ~~dlkedl~eec~K~G~v~~vvv~d~h-PdGvvtV~f~n~eeA~~ciq~m~GR 337 (382)
T KOG1548|consen 286 LNDLKEDLTEECEKFGQVRKVVVYDRH-PDGVVTVSFRNNEEADQCIQTMDGR 337 (382)
T ss_pred HHHHHHHHHHHHHHhCCcceEEEeccC-CCceeEEEeCChHHHHHHHHHhcCe
Confidence 56777777777666432 111 5689999999999999999998764
No 79
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=29.34 E-value=75 Score=25.00 Aligned_cols=36 Identities=14% Similarity=0.050 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHH---HHHhCCCCCCccccccccccC
Q 010634 10 SAALNILGAFIFLIAF---AILRLQPFNDRVYFPKWYLKG 46 (505)
Q Consensus 10 ~l~~~~~~~~~~~~~F---~~lR~~~~~~~iY~pr~~~~~ 46 (505)
+..+-+++|++.+++| |.-|+|. -+.||.|=..+.+
T Consensus 36 ~~lvI~~iFil~VilwfvCC~kRkrs-RrPIYrPvI~~~P 74 (94)
T PF05393_consen 36 WFLVICGIFILLVILWFVCCKKRKRS-RRPIYRPVIGLEP 74 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhc-cCCccccccccCC
Confidence 3333344444444444 3344443 4679988766544
No 80
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=28.20 E-value=1.6e+02 Score=21.64 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=27.6
Q ss_pred cceEEEEcCCCCCCccHHHHHHHhhhhcCCCcee-----eeEeEecchh
Q 010634 201 QFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYL-----THQVVVNANK 244 (505)
Q Consensus 201 ~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~-----~v~i~~d~~~ 244 (505)
..+|.|+|+-.-+.+.++..+.+||....|..|+ ++++++.-.+
T Consensus 5 peavhirGvd~lsT~dI~~y~~~y~~~~~~~~IEWIdDtScNvvf~d~~ 53 (62)
T PF10309_consen 5 PEAVHIRGVDELSTDDIKAYFSEYFDEEGPFRIEWIDDTSCNVVFKDEE 53 (62)
T ss_pred eceEEEEcCCCCCHHHHHHHHHHhcccCCCceEEEecCCcEEEEECCHH
Confidence 3588999987654444555555555444666654 6778876543
No 81
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.71 E-value=3.1e+02 Score=29.62 Aligned_cols=51 Identities=24% Similarity=0.338 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhhchh-----------hHHhhcccchhhhhchhHHHHHHhhhHHHHH
Q 010634 383 FFLTFFFMIPIAIVQSFASIE-----------GIEKAVPFLKPVIEAKFIKSVIQGFLPGIAL 434 (505)
Q Consensus 383 ~~liif~~iPva~v~~l~~~~-----------~l~~~~p~l~~~~~~~~~~~~i~~~lP~l~l 434 (505)
+++-++.++|.+++++..-.. .+-..+|.-.+. -+|....++.|++|-..+
T Consensus 439 l~LwF~isVPLsf~G~y~g~kk~~~e~PvrTNqIpRqIP~q~~y-~~~~~~ili~GilPFg~i 500 (628)
T KOG1278|consen 439 LFLWFGISVPLSFVGGYFGFKKPAIEHPVRTNQIPRQIPEQPWY-LNPIPSILIAGILPFGAI 500 (628)
T ss_pred HHHHHHhhhhHHHhhHHhhccCCCCCCCcccCCCcccCCCCccc-cchhhHHHhhcccchHHH
Confidence 334455689999999863211 111223322222 235667788889996553
No 82
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=25.97 E-value=1.3e+02 Score=23.75 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=12.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHH
Q 010634 1 MATLADIGVSAALNILGAFIFL 22 (505)
Q Consensus 1 ~~~~~~~~~~l~~~~~~~~~~~ 22 (505)
||+.++.+...+...++|.+.+
T Consensus 1 Mm~~~~~l~~~~~lm~~GM~~V 22 (85)
T PRK03814 1 MTDIGSLLVDAATLMLTGMGVV 22 (85)
T ss_pred CCcHHHHHHHHHHHHHHHHHHH
Confidence 7887666655554444444333
No 83
>PF14752 RBP_receptor: Retinol binding protein receptor
Probab=25.14 E-value=6.7e+02 Score=27.72 Aligned_cols=53 Identities=23% Similarity=0.256 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcC-------CcchhHHHHHHHhHHHH-HHHHHHHHH
Q 010634 427 GFLPGIALKLFLIFLPTILMIMSKFEG-------FISLSSLERRAATRYYL-FNFVNVFLG 479 (505)
Q Consensus 427 ~~lP~l~l~~~~~llP~ii~~ls~~eg-------~~T~S~~~~s~~~k~f~-fl~~n~flv 479 (505)
...|..++.+...++-.++....-.|. +.+.+--++..+.-+.+ +.++|+++.
T Consensus 427 ~~~p~~~~~~~~~ilQ~~~a~~~Fl~~k~~~~~~~~~~~l~nRr~f~~~~y~~f~~Nv~~G 487 (617)
T PF14752_consen 427 SIWPFWLVLVLAVILQNILARFFFLQDKLGPADKGKPLALDNRRAFHIFTYFLFFYNVLVG 487 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheecccccccCCCCceeechhhHHHHHHHHHHHHHHHH
Confidence 334766666665666665555554554 33333344555555444 445577764
No 84
>PF14364 DUF4408: Domain of unknown function (DUF4408)
Probab=23.90 E-value=41 Score=21.53 Aligned_cols=20 Identities=40% Similarity=0.622 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHhhHh
Q 010634 466 TRYYLFNFVNVFLGSIIAGT 485 (505)
Q Consensus 466 ~k~f~fl~~n~flv~~i~~s 485 (505)
+--++|.++|+.+++..++|
T Consensus 13 tP~~Lfv~~N~IIi~i~~~S 32 (34)
T PF14364_consen 13 TPPYLFVIVNLIIITIVASS 32 (34)
T ss_pred CCCeehhhhhhHHHHhhhhc
Confidence 33467888888776655543
No 85
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=23.75 E-value=29 Score=25.61 Aligned_cols=24 Identities=33% Similarity=0.402 Sum_probs=1.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCccc
Q 010634 15 ILGAFIFLIAFAILRLQPFNDRVY 38 (505)
Q Consensus 15 ~~~~~~~~~~F~~lR~~~~~~~iY 38 (505)
.+++++++++|.+.|.|.++..-|
T Consensus 21 gll~ailLIlf~iyR~rkkdEGSY 44 (64)
T PF01034_consen 21 GLLFAILLILFLIYRMRKKDEGSY 44 (64)
T ss_dssp ----------------S------S
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCc
Confidence 345566777888888765554444
No 86
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=23.68 E-value=67 Score=27.42 Aligned_cols=9 Identities=33% Similarity=0.479 Sum_probs=3.4
Q ss_pred HHHHHHHHh
Q 010634 21 FLIAFAILR 29 (505)
Q Consensus 21 ~~~~F~~lR 29 (505)
++++|++.+
T Consensus 15 ~~~~~~~~~ 23 (130)
T PF12273_consen 15 FLFLFYCHN 23 (130)
T ss_pred HHHHHHHHH
Confidence 333333333
No 87
>PF15179 Myc_target_1: Myc target protein 1
Probab=23.19 E-value=1.3e+02 Score=27.17 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccc
Q 010634 6 DIGVSAALNILGAFIFLIAFAILRLQPFNDRVY 38 (505)
Q Consensus 6 ~~~~~l~~~~~~~~~~~~~F~~lR~~~~~~~iY 38 (505)
+|-.++++-++||++..++|.++-+|+-..+|.
T Consensus 24 aF~vSm~iGLviG~li~~LltwlSRRRASa~Is 56 (197)
T PF15179_consen 24 AFCVSMAIGLVIGALIWALLTWLSRRRASARIS 56 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 455667777777777777776665543344554
No 88
>PF00322 Endothelin: Endothelin family; InterPro: IPR001928 Endothelins (ET's) are the most potent vasoconstrictors known [, , ]. They stimulate cardiac contraction, regulate release of vasoactive substances, and stimulate mitogenesis in blood vessels in primary culture. They also stimulate contraction in almost all other smooth muscles (e.g., uterus, bronchus, vas deferensa and stomach) and stimulate secretion in several tissues (e.g., kidney, liver and adrenals). Endothelin receptors have also been found in the brain, e.g. cerebral cortex, cerebellum and glial cells. Endothelins have been implicated in a variety of pathophysiological conditions associated with stress, including hypertension, myocardial infarction, subarachnoid haemorrhage and renal failure. Endothelins are synthesised by proteolysis of large preproendothelins, which are cleaved to 'big endothelins' before being processed to the mature peptide. Sarafotoxins (SRTX) and bibrotoxin (BTX) are cardiotoxins from the venom of snakes of the Atractaspis family, structurally and functionally [, ] similar to endothelin. As shown in the following schematic representation, these peptides which are 21 residues long contain two intramolecular disulphide bonds. +-------------+ | | CxCxxxxxxxCxxxCxxxxxx | | +-------+ 'C': conserved cysteine involved in a disulphide bond. ; GO: 0019229 regulation of vasoconstriction, 0005576 extracellular region; PDB: 1V6R_A 1T7H_A 1EDP_A 1EDN_A 3CMH_A 6CMH_A 1SRB_A 2LDF_A.
Probab=23.07 E-value=27 Score=21.64 Aligned_cols=6 Identities=50% Similarity=1.309 Sum_probs=2.6
Q ss_pred CeecCC
Q 010634 358 DVYWQN 363 (505)
Q Consensus 358 DIiW~N 363 (505)
||||.|
T Consensus 23 diIW~n 28 (31)
T PF00322_consen 23 DIIWVN 28 (31)
T ss_dssp TTT-S-
T ss_pred cEEEec
Confidence 666665
No 89
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=22.82 E-value=1.1e+02 Score=20.96 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 010634 293 YHISEIEKLSKEIAEERER 311 (505)
Q Consensus 293 ~~~~~l~~l~~~I~~~~~~ 311 (505)
..+++++.++++|.+++++
T Consensus 16 ~IEqkiedid~qIaeLe~K 34 (46)
T PF08946_consen 16 NIEQKIEDIDEQIAELEAK 34 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHHHHHHHHHH
Confidence 4567888888888777654
No 90
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=22.44 E-value=45 Score=36.85 Aligned_cols=68 Identities=9% Similarity=0.058 Sum_probs=0.0
Q ss_pred HhCCCCCCCcceEEEEcCCCCCCccHHHHHHHhhhhcCCCceeeeEeEecchhHHHHHHHHHHHHHHHHHHHH
Q 010634 192 VASEKRRPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQL 264 (505)
Q Consensus 192 l~~~~~~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~L~~l~~~r~~~~~~le~~~~ 264 (505)
+.....++.++|+.|-+||+...| ..|.+.|+++ |+|.++.++-+-+----.+..|+.+.+.+..+++
T Consensus 412 I~pd~isV~SrTLwvG~i~k~v~e---~dL~~~feef--GeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n 479 (894)
T KOG0132|consen 412 IPPDHISVCSRTLWVGGIPKNVTE---QDLANLFEEF--GEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSN 479 (894)
T ss_pred CCCcceeEeeeeeeeccccchhhH---HHHHHHHHhc--ccceeEeeccCCceeEEEEeehhHHHHHHHHHhc
No 91
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=22.37 E-value=1.2e+02 Score=28.20 Aligned_cols=35 Identities=20% Similarity=0.092 Sum_probs=27.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC--CCCCceeeeC
Q 010634 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 353 (505)
..|.|||.|.++.+|..|.+.+... ....+.++.+
T Consensus 156 ~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~ 192 (306)
T COG0724 156 SRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKA 192 (306)
T ss_pred cCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecc
Confidence 6799999999999999999987743 3344555554
No 92
>CHL00031 psbT photosystem II protein T
Probab=21.79 E-value=1.3e+02 Score=19.00 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=14.8
Q ss_pred HHHHHHhhHhHHHHHHHHHhcccccccCC
Q 010634 476 VFLGSIIAGTAFEQLNSFLKQSANEYVAT 504 (505)
Q Consensus 476 ~flv~~i~~s~~~~l~~~~~~p~~~i~~~ 504 (505)
+|+.....|.++-.+ +.++|| .|+..
T Consensus 7 tfll~~tlgilFFAI--~FRePP-ri~kk 32 (33)
T CHL00031 7 TFLLVSTLGIIFFAI--FFREPP-KVPTK 32 (33)
T ss_pred HHHHHHHHHHHHHhh--eecCCC-CCCCC
Confidence 444444445555544 678884 77754
No 93
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=21.75 E-value=1.1e+02 Score=26.57 Aligned_cols=25 Identities=28% Similarity=0.394 Sum_probs=20.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhc
Q 010634 288 VDGIDYHISEIEKLSKEIAEERERV 312 (505)
Q Consensus 288 vdai~~~~~~l~~l~~~I~~~~~~~ 312 (505)
-||.+||++|++.+++++++.+.-.
T Consensus 100 e~akdyfkRKve~l~kq~e~i~~i~ 124 (153)
T KOG3048|consen 100 EDAKDYFKRKVEYLTKQIEQIEGIL 124 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999988766543
No 94
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=21.38 E-value=3e+02 Score=21.16 Aligned_cols=39 Identities=28% Similarity=0.194 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHh
Q 010634 428 FLPGIALKLFLIFLPTILMIMSKFEGFISLSSLERRAAT 466 (505)
Q Consensus 428 ~lP~l~l~~~~~llP~ii~~ls~~eg~~T~S~~~~s~~~ 466 (505)
.+|.++..+|.+.+=.++.|.++.++..+-|+.|...+.
T Consensus 7 ~~Pliif~ifVap~wl~lHY~~k~~~~~~ls~~d~~~L~ 45 (75)
T TIGR02976 7 AIPLIIFVIFVAPLWLILHYRSKRKTAASLSTDDQALLQ 45 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHH
Confidence 356666666666677788999998887777777766553
No 95
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=21.28 E-value=79 Score=28.71 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=20.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhcc
Q 010634 320 MPAAFVSFNSRWGAAVCAQTQQ 341 (505)
Q Consensus 320 ~~~AFVtF~s~~~a~~a~q~~~ 341 (505)
.|.||+.|.++.+|.-|++.+.
T Consensus 51 qGygF~Ef~~eedadYAikiln 72 (203)
T KOG0131|consen 51 QGYGFAEFRTEEDADYAIKILN 72 (203)
T ss_pred cceeEEEEechhhhHHHHHHHH
Confidence 5899999999999999998765
No 96
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=20.69 E-value=2.2e+02 Score=27.40 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=22.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcccC
Q 010634 319 IMPAAFVSFNSRWGAAVCAQTQQTR 343 (505)
Q Consensus 319 ~~~~AFVtF~s~~~a~~a~q~~~~~ 343 (505)
..|.+.|-|.++.+|..|.|.+...
T Consensus 109 l~GNVYV~f~~Ee~ae~a~~~lnnR 133 (260)
T KOG2202|consen 109 LVGNVYVKFRSEEDAEAALEDLNNR 133 (260)
T ss_pred hhhhhhhhcccHHHHHHHHHHHcCc
Confidence 5789999999999999999998764
No 97
>PF07284 BCHF: 2-vinyl bacteriochlorophyllide hydratase (BCHF); InterPro: IPR009905 This family contains the bacterial enzyme 2-vinyl bacteriochlorophyllide hydratase (approximately 150 residues long). This is involved in the light-independent bacteriochlorophyll biosynthesis pathway by adding water across the 2-vinyl group [].This enzyme is apparently absent from cyanobacteria (which do not use bacteriochlorophyll).; GO: 0016836 hydro-lyase activity, 0019685 photosynthesis, dark reaction, 0030494 bacteriochlorophyll biosynthetic process
Probab=20.57 E-value=5.5e+02 Score=22.06 Aligned_cols=60 Identities=25% Similarity=0.414 Sum_probs=42.3
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHhHHHHHHHHHHHHHHHhhHhHHH
Q 010634 420 FIKSVIQGFLPGIALKLFLIFLPTILMIMSKFEGFISLSSLERRAATRYYLFNFVNVFLGSIIAGTAFE 488 (505)
Q Consensus 420 ~~~~~i~~~lP~l~l~~~~~llP~ii~~ls~~eg~~T~S~~~~s~~~k~f~fl~~n~flv~~i~~s~~~ 488 (505)
..+..+||+|.|+=-.+|..-+-.+++++..-||+ .-...|+.-|.+++-.+ .+.|+++.
T Consensus 12 S~WT~VQgiLAPiQF~vFlisl~lv~~yl~tg~g~---~~at~si~~KT~~l~~i------miTGaiwE 71 (139)
T PF07284_consen 12 SVWTLVQGILAPIQFLVFLISLGLVLRYLATGEGF---YWATISIVIKTLVLYLI------MITGAIWE 71 (139)
T ss_pred CchHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHHHHH------HHHhHHHH
Confidence 44778999998887777777788888888877665 34556777776654332 55677765
No 98
>PF09446 VMA21: VMA21-like domain; InterPro: IPR019013 The vacuolar ATPase assembly integral membrane protein VMA21 is required for the assembly of the integral membrane sector (V0 component) of the vacuolar ATPase (V-ATPase) in the endoplasmic reticulum []. This entry represents a putative short domain found in VMA21-like proteins, and which appears to contain two potential transmembrane helices.
Probab=20.50 E-value=3.7e+02 Score=19.96 Aligned_cols=50 Identities=26% Similarity=0.340 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHhh---cCCcchhHHHHHHHhHHHHHHHHHHHHHHHh
Q 010634 433 ALKLFLIFLPTILMIMSKF---EGFISLSSLERRAATRYYLFNFVNVFLGSII 482 (505)
Q Consensus 433 ~l~~~~~llP~ii~~ls~~---eg~~T~S~~~~s~~~k~f~fl~~n~flv~~i 482 (505)
.-++++..+|....+..+. +|....|+.+..+..-...-..+|+.++.-+
T Consensus 10 ~fs~~M~~lPl~~ff~~~~~~~~~~~~~~~~~~~~~sgi~Avi~vnvVl~~Yi 62 (66)
T PF09446_consen 10 FFSVLMFTLPLGTFFGFKYFLFDGFFGLSPSDNTIYSGIAAVIVVNVVLASYI 62 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 4456677899998888864 7777788888899988888888998876544
Done!