Query 010637
Match_columns 505
No_of_seqs 448 out of 4043
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 02:50:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0362 Gnd 6-phosphogluconate 100.0 8E-139 2E-143 1027.2 47.0 468 6-482 3-470 (473)
2 KOG2653 6-phosphogluconate deh 100.0 5E-130 1E-134 949.3 42.7 484 1-492 1-486 (487)
3 PTZ00142 6-phosphogluconate de 100.0 7E-118 1E-122 940.4 50.8 469 6-480 1-470 (470)
4 PLN02350 phosphogluconate dehy 100.0 1E-116 3E-121 930.7 52.9 484 1-486 1-485 (493)
5 PRK09287 6-phosphogluconate de 100.0 5E-116 1E-120 922.6 49.5 454 17-481 1-457 (459)
6 TIGR00873 gnd 6-phosphoglucona 100.0 7E-115 2E-119 917.7 51.3 463 8-480 1-466 (467)
7 PF00393 6PGD: 6-phosphoglucon 100.0 1.2E-89 2.5E-94 671.4 27.6 291 184-480 1-291 (291)
8 COG1023 Gnd Predicted 6-phosph 100.0 2.1E-60 4.5E-65 442.4 24.8 298 7-469 1-299 (300)
9 TIGR00872 gnd_rel 6-phosphoglu 100.0 5.7E-56 1.2E-60 447.8 33.0 295 7-468 1-297 (298)
10 PRK09599 6-phosphogluconate de 100.0 1.1E-47 2.4E-52 388.2 35.8 299 7-469 1-300 (301)
11 COG2084 MmsB 3-hydroxyisobutyr 100.0 2.3E-46 4.9E-51 368.4 28.7 256 7-289 1-261 (286)
12 PRK12490 6-phosphogluconate de 100.0 6.1E-45 1.3E-49 367.7 33.7 207 7-223 1-208 (299)
13 KOG0409 Predicted dehydrogenas 100.0 1.5E-42 3.2E-47 334.6 26.2 263 6-296 35-302 (327)
14 PRK15059 tartronate semialdehy 100.0 2.9E-40 6.3E-45 332.0 28.9 262 7-297 1-266 (292)
15 PRK15461 NADH-dependent gamma- 100.0 3.7E-39 8.1E-44 325.0 29.0 264 7-298 2-270 (296)
16 TIGR01692 HIBADH 3-hydroxyisob 100.0 4.9E-38 1.1E-42 315.9 28.5 260 11-297 1-270 (288)
17 PLN02858 fructose-bisphosphate 100.0 4.9E-37 1.1E-41 359.3 30.6 262 7-296 5-273 (1378)
18 PRK11559 garR tartronate semia 100.0 1.8E-36 3.8E-41 305.8 30.1 264 6-297 2-269 (296)
19 TIGR01505 tartro_sem_red 2-hyd 100.0 3.7E-36 8.1E-41 302.7 29.7 262 8-297 1-266 (291)
20 PLN02858 fructose-bisphosphate 100.0 3.6E-35 7.8E-40 343.6 30.0 266 5-298 323-595 (1378)
21 PF03446 NAD_binding_2: NAD bi 100.0 1.5E-31 3.3E-36 246.6 14.3 159 6-180 1-163 (163)
22 TIGR03026 NDP-sugDHase nucleot 100.0 1.6E-27 3.5E-32 251.1 22.3 251 7-289 1-289 (411)
23 PRK11064 wecC UDP-N-acetyl-D-m 99.9 1.3E-23 2.8E-28 221.1 22.4 206 6-224 3-247 (415)
24 PRK14618 NAD(P)H-dependent gly 99.9 2.2E-24 4.7E-29 220.9 15.6 285 1-310 1-322 (328)
25 PRK00094 gpsA NAD(P)H-dependen 99.9 1.2E-23 2.6E-28 214.8 18.9 281 6-309 1-323 (325)
26 PRK15182 Vi polysaccharide bio 99.9 4.1E-23 8.8E-28 217.4 22.2 249 5-289 5-286 (425)
27 PRK06129 3-hydroxyacyl-CoA deh 99.9 5.3E-22 1.1E-26 201.5 22.6 250 7-290 3-273 (308)
28 PRK15057 UDP-glucose 6-dehydro 99.9 3.2E-22 7E-27 208.2 20.5 200 7-224 1-232 (388)
29 PF00393 6PGD: 6-phosphoglucon 99.9 1.2E-23 2.6E-28 206.6 7.9 118 328-450 1-120 (291)
30 PRK14619 NAD(P)H-dependent gly 99.9 4.3E-22 9.4E-27 202.1 15.3 260 6-310 4-300 (308)
31 COG0362 Gnd 6-phosphogluconate 99.8 5.9E-22 1.3E-26 197.5 5.7 117 326-450 177-299 (473)
32 COG1023 Gnd Predicted 6-phosph 99.8 2.1E-20 4.6E-25 175.2 14.4 197 64-300 78-277 (300)
33 PRK12557 H(2)-dependent methyl 99.8 2.4E-19 5.2E-24 183.4 21.8 197 7-224 1-236 (342)
34 PRK07531 bifunctional 3-hydrox 99.8 3.6E-19 7.9E-24 191.6 20.4 195 5-225 3-218 (495)
35 KOG2653 6-phosphogluconate deh 99.8 1.1E-20 2.3E-25 185.5 6.6 121 325-450 180-302 (487)
36 PRK09260 3-hydroxybutyryl-CoA 99.8 7.5E-19 1.6E-23 176.7 19.2 193 7-225 2-218 (288)
37 PLN02688 pyrroline-5-carboxyla 99.8 1.7E-17 3.6E-22 165.0 24.3 236 7-288 1-252 (266)
38 PRK07819 3-hydroxybutyryl-CoA 99.8 8.4E-18 1.8E-22 168.8 20.1 200 1-225 1-223 (286)
39 PRK08268 3-hydroxy-acyl-CoA de 99.8 6.7E-18 1.5E-22 181.7 20.5 189 6-225 7-223 (507)
40 PRK07679 pyrroline-5-carboxyla 99.8 1.2E-17 2.5E-22 167.4 19.3 185 7-227 4-209 (279)
41 COG0677 WecC UDP-N-acetyl-D-ma 99.8 1.7E-17 3.6E-22 166.9 20.1 206 6-224 9-250 (436)
42 PRK08229 2-dehydropantoate 2-r 99.8 1.9E-17 4E-22 170.5 20.7 262 5-289 1-309 (341)
43 COG0240 GpsA Glycerol-3-phosph 99.8 4.7E-18 1E-22 169.5 15.3 288 6-309 1-322 (329)
44 PLN02353 probable UDP-glucose 99.8 1.1E-16 2.3E-21 170.3 25.8 254 6-289 1-299 (473)
45 COG1004 Ugd Predicted UDP-gluc 99.8 1.9E-16 4.1E-21 160.0 25.7 254 7-290 1-288 (414)
46 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.8 2.8E-17 6.1E-22 176.5 19.0 192 6-226 5-222 (503)
47 PRK06130 3-hydroxybutyryl-CoA 99.7 1.4E-16 3E-21 162.1 20.9 195 4-225 2-217 (311)
48 PRK07417 arogenate dehydrogena 99.7 4E-17 8.8E-22 163.4 16.0 175 7-201 1-188 (279)
49 PRK07066 3-hydroxybutyryl-CoA 99.7 1.5E-16 3.2E-21 161.3 19.6 195 6-225 7-221 (321)
50 PRK08507 prephenate dehydrogen 99.7 1.9E-16 4.2E-21 158.2 18.9 190 7-223 1-205 (275)
51 PRK07530 3-hydroxybutyryl-CoA 99.7 2.3E-16 5.1E-21 159.0 19.0 193 6-225 4-220 (292)
52 PLN02545 3-hydroxybutyryl-CoA 99.7 1.9E-16 4.2E-21 159.8 18.2 190 6-225 4-220 (295)
53 PRK06035 3-hydroxyacyl-CoA deh 99.7 8.4E-16 1.8E-20 154.9 18.8 193 7-225 4-222 (291)
54 PRK08293 3-hydroxybutyryl-CoA 99.7 3.3E-15 7.2E-20 150.2 22.0 197 6-225 3-222 (287)
55 PRK12439 NAD(P)H-dependent gly 99.7 6.2E-15 1.4E-19 151.7 22.7 290 5-312 6-331 (341)
56 PRK07680 late competence prote 99.7 2E-14 4.3E-19 143.5 25.6 196 7-227 1-205 (273)
57 PRK05808 3-hydroxybutyryl-CoA 99.7 3E-15 6.4E-20 150.2 19.1 193 7-225 4-219 (282)
58 PTZ00345 glycerol-3-phosphate 99.7 1.2E-15 2.6E-20 157.2 16.4 288 6-310 11-355 (365)
59 PRK11199 tyrA bifunctional cho 99.7 2.5E-15 5.3E-20 156.4 17.5 179 5-222 97-279 (374)
60 PRK08655 prephenate dehydrogen 99.7 1.1E-14 2.3E-19 154.5 21.8 194 7-222 1-200 (437)
61 TIGR03376 glycerol3P_DH glycer 99.6 2.3E-15 4.9E-20 154.0 15.2 278 8-303 1-337 (342)
62 PTZ00142 6-phosphogluconate de 99.6 3.3E-16 7.2E-21 166.4 8.4 117 326-450 176-298 (470)
63 PRK06476 pyrroline-5-carboxyla 99.6 9.8E-14 2.1E-18 137.4 25.4 238 7-287 1-244 (258)
64 PRK11880 pyrroline-5-carboxyla 99.6 1.6E-13 3.5E-18 136.4 26.3 243 5-287 1-252 (267)
65 PRK07502 cyclohexadienyl dehyd 99.6 1.3E-14 2.8E-19 147.3 18.0 174 1-190 1-189 (307)
66 PRK12921 2-dehydropantoate 2-r 99.6 3.1E-14 6.8E-19 144.1 20.5 255 7-289 1-293 (305)
67 TIGR00873 gnd 6-phosphoglucona 99.6 1.2E-15 2.5E-20 162.4 8.0 116 326-449 173-293 (467)
68 PRK14620 NAD(P)H-dependent gly 99.6 2E-13 4.4E-18 139.7 24.3 277 7-306 1-322 (326)
69 PRK12491 pyrroline-5-carboxyla 99.6 5.4E-13 1.2E-17 133.0 26.3 195 6-226 2-206 (272)
70 PRK09287 6-phosphogluconate de 99.6 2.1E-15 4.5E-20 159.8 8.0 117 326-450 165-287 (459)
71 TIGR01724 hmd_rel H2-forming N 99.6 1.8E-13 3.9E-18 135.7 20.9 192 7-218 1-231 (341)
72 PRK06522 2-dehydropantoate 2-r 99.6 8.1E-14 1.7E-18 140.9 18.9 254 7-288 1-289 (304)
73 PRK08269 3-hydroxybutyryl-CoA 99.6 4.7E-14 1E-18 143.3 17.0 178 17-225 1-216 (314)
74 COG1250 FadB 3-hydroxyacyl-CoA 99.5 1.8E-13 3.9E-18 136.8 16.7 193 6-225 3-219 (307)
75 PRK06545 prephenate dehydrogen 99.5 3.5E-13 7.5E-18 139.7 19.3 172 7-192 1-186 (359)
76 PRK06249 2-dehydropantoate 2-r 99.5 1.7E-12 3.6E-17 132.3 21.1 252 6-288 5-300 (313)
77 PF03721 UDPG_MGDP_dh_N: UDP-g 99.5 2.9E-13 6.3E-18 127.2 14.0 149 7-160 1-184 (185)
78 PRK07634 pyrroline-5-carboxyla 99.5 8.3E-12 1.8E-16 122.5 20.7 195 6-227 4-209 (245)
79 PLN02256 arogenate dehydrogena 99.5 6.8E-12 1.5E-16 126.8 20.6 165 5-187 35-211 (304)
80 COG0287 TyrA Prephenate dehydr 99.4 2.7E-12 6E-17 127.6 16.8 167 5-187 2-178 (279)
81 PRK11730 fadB multifunctional 99.4 2.1E-12 4.6E-17 144.8 17.9 192 6-226 313-529 (715)
82 TIGR01915 npdG NADPH-dependent 99.4 1.5E-12 3.2E-17 125.9 13.2 162 7-182 1-191 (219)
83 TIGR02441 fa_ox_alpha_mit fatt 99.4 2.5E-12 5.4E-17 144.3 16.9 193 6-227 335-552 (737)
84 PRK06928 pyrroline-5-carboxyla 99.4 4.5E-11 9.7E-16 119.7 24.1 189 6-226 1-207 (277)
85 TIGR02440 FadJ fatty oxidation 99.4 4.6E-12 1E-16 141.7 18.6 191 6-225 304-520 (699)
86 COG0345 ProC Pyrroline-5-carbo 99.4 7E-11 1.5E-15 116.1 24.4 194 6-226 1-203 (266)
87 TIGR02437 FadB fatty oxidation 99.4 4E-12 8.8E-17 142.3 17.9 191 6-225 313-528 (714)
88 PLN02712 arogenate dehydrogena 99.4 9.3E-12 2E-16 138.0 18.7 159 5-182 368-539 (667)
89 COG2085 Predicted dinucleotide 99.4 3.6E-12 7.7E-17 119.6 13.0 166 6-186 1-186 (211)
90 PRK11154 fadJ multifunctional 99.4 7.2E-12 1.6E-16 140.5 18.0 192 6-225 309-525 (708)
91 PF02737 3HCDH_N: 3-hydroxyacy 99.4 2.2E-12 4.8E-17 120.8 11.5 153 8-178 1-177 (180)
92 PF03807 F420_oxidored: NADP o 99.4 2E-12 4.3E-17 108.1 10.0 90 8-108 1-95 (96)
93 PRK05708 2-dehydropantoate 2-r 99.4 1.5E-11 3.2E-16 124.8 17.1 256 6-289 2-289 (305)
94 PF01210 NAD_Gly3P_dh_N: NAD-d 99.4 4.3E-12 9.2E-17 116.2 11.3 99 8-110 1-106 (157)
95 PF14833 NAD_binding_11: NAD-b 99.3 5.9E-12 1.3E-16 110.3 10.0 104 182-297 1-105 (122)
96 PRK14806 bifunctional cyclohex 99.3 4E-11 8.6E-16 135.8 18.9 162 6-182 3-179 (735)
97 PLN02350 phosphogluconate dehy 99.3 4.4E-12 9.6E-17 135.3 10.5 118 326-451 182-305 (493)
98 PRK05479 ketol-acid reductoiso 99.3 6.7E-11 1.5E-15 119.9 18.1 198 6-221 17-225 (330)
99 COG1893 ApbA Ketopantoate redu 99.3 1.8E-10 3.8E-15 116.7 19.7 254 7-288 1-291 (307)
100 PLN02712 arogenate dehydrogena 99.3 1.3E-10 2.9E-15 128.9 19.9 160 6-183 52-223 (667)
101 PTZ00431 pyrroline carboxylate 99.3 5.4E-10 1.2E-14 110.8 21.9 185 7-226 4-199 (260)
102 PRK08818 prephenate dehydrogen 99.3 9.6E-11 2.1E-15 120.9 16.2 153 6-190 4-165 (370)
103 KOG2304 3-hydroxyacyl-CoA dehy 99.3 2.9E-11 6.3E-16 113.1 10.6 195 6-225 11-233 (298)
104 PF10727 Rossmann-like: Rossma 99.3 6.9E-12 1.5E-16 110.1 5.9 110 6-128 10-122 (127)
105 cd01075 NAD_bind_Leu_Phe_Val_D 99.1 3.6E-09 7.7E-14 100.8 17.2 139 7-163 29-170 (200)
106 PRK07574 formate dehydrogenase 99.1 2.1E-09 4.6E-14 111.7 15.6 111 7-127 193-304 (385)
107 PRK12480 D-lactate dehydrogena 99.1 1.3E-09 2.8E-14 111.6 13.5 117 7-137 147-264 (330)
108 PLN03139 formate dehydrogenase 99.1 3.6E-09 7.9E-14 109.9 15.9 113 7-129 200-313 (386)
109 TIGR00745 apbA_panE 2-dehydrop 99.1 1.1E-08 2.4E-13 102.8 18.9 243 17-288 2-282 (293)
110 TIGR00465 ilvC ketol-acid redu 99.0 5.7E-09 1.2E-13 105.9 16.6 145 7-166 4-159 (314)
111 KOG2305 3-hydroxyacyl-CoA dehy 99.0 7.3E-09 1.6E-13 97.3 13.3 203 7-235 4-229 (313)
112 PRK13243 glyoxylate reductase; 99.0 4.2E-09 9.2E-14 108.1 12.5 116 7-134 151-267 (333)
113 PF02153 PDH: Prephenate dehyd 99.0 1.4E-08 3E-13 100.7 15.0 153 21-190 1-168 (258)
114 cd01065 NAD_bind_Shikimate_DH 98.9 2.5E-09 5.4E-14 97.2 8.6 118 6-131 19-138 (155)
115 PRK08605 D-lactate dehydrogena 98.9 6.8E-09 1.5E-13 106.5 12.4 109 7-128 147-257 (332)
116 PRK15469 ghrA bifunctional gly 98.9 4.6E-09 9.9E-14 106.7 10.7 117 7-135 137-254 (312)
117 PRK06436 glycerate dehydrogena 98.9 6.5E-09 1.4E-13 105.0 11.2 115 7-136 123-238 (303)
118 PF02826 2-Hacid_dh_C: D-isome 98.9 7.3E-09 1.6E-13 96.9 10.6 111 7-128 37-148 (178)
119 PRK13403 ketol-acid reductoiso 98.9 1.4E-08 3E-13 101.9 11.0 88 7-106 17-105 (335)
120 PRK13302 putative L-aspartate 98.8 2.3E-08 5E-13 99.7 12.2 125 1-137 1-129 (271)
121 TIGR01327 PGDH D-3-phosphoglyc 98.8 4.1E-08 8.8E-13 106.8 12.0 112 7-129 139-251 (525)
122 KOG2380 Prephenate dehydrogena 98.8 8.9E-08 1.9E-12 94.9 12.6 149 7-167 53-213 (480)
123 PRK13581 D-3-phosphoglycerate 98.7 5.3E-08 1.2E-12 105.9 11.9 108 7-126 141-249 (526)
124 PLN02928 oxidoreductase family 98.7 1.2E-07 2.7E-12 97.7 13.8 121 7-134 160-289 (347)
125 PRK09599 6-phosphogluconate de 98.7 4.7E-08 1E-12 99.1 10.3 98 191-299 176-277 (301)
126 PF07991 IlvN: Acetohydroxy ac 98.7 6.2E-08 1.3E-12 87.6 9.8 89 7-107 5-95 (165)
127 TIGR00112 proC pyrroline-5-car 98.7 4.8E-06 1E-10 81.9 23.3 172 29-226 9-186 (245)
128 COG0111 SerA Phosphoglycerate 98.7 1.1E-07 2.4E-12 96.8 11.3 109 7-126 143-252 (324)
129 PRK00257 erythronate-4-phospha 98.7 7.3E-08 1.6E-12 100.2 9.9 116 7-137 117-237 (381)
130 COG1052 LdhA Lactate dehydroge 98.6 2.8E-07 6E-12 93.9 12.6 117 7-135 147-264 (324)
131 PRK11790 D-3-phosphoglycerate 98.6 1.8E-07 4E-12 98.5 11.6 114 7-134 152-266 (409)
132 PRK08410 2-hydroxyacid dehydro 98.6 2.1E-07 4.5E-12 94.7 11.5 114 7-136 146-260 (311)
133 PRK15409 bifunctional glyoxyla 98.6 5.4E-07 1.2E-11 92.1 14.5 109 7-127 146-256 (323)
134 PRK13304 L-aspartate dehydroge 98.6 3.6E-07 7.7E-12 90.9 12.6 119 6-137 1-126 (265)
135 TIGR02853 spore_dpaA dipicolin 98.6 2.5E-07 5.3E-12 93.1 11.1 111 7-132 152-262 (287)
136 PRK06487 glycerate dehydrogena 98.6 6E-07 1.3E-11 91.6 13.3 105 7-128 149-254 (317)
137 COG4007 Predicted dehydrogenas 98.6 3.3E-06 7.1E-11 81.0 16.9 202 6-223 1-237 (340)
138 PRK06932 glycerate dehydrogena 98.6 5.3E-07 1.2E-11 91.8 11.8 106 7-128 148-254 (314)
139 PRK15438 erythronate-4-phospha 98.6 2.8E-07 6E-12 95.6 9.8 106 7-127 117-227 (378)
140 PRK06141 ornithine cyclodeamin 98.5 2.8E-07 6.1E-12 93.9 9.2 115 7-131 126-242 (314)
141 PLN02306 hydroxypyruvate reduc 98.5 1.7E-06 3.7E-11 90.3 12.7 128 7-137 166-302 (386)
142 PRK14194 bifunctional 5,10-met 98.5 4.6E-07 9.9E-12 90.7 8.1 74 7-110 160-234 (301)
143 KOG2666 UDP-glucose/GDP-mannos 98.4 2.3E-05 5.1E-10 77.3 19.4 207 6-224 1-251 (481)
144 PF02558 ApbA: Ketopantoate re 98.4 1E-06 2.3E-11 79.6 9.3 107 9-121 1-114 (151)
145 KOG0069 Glyoxylate/hydroxypyru 98.4 2.4E-06 5.3E-11 86.4 11.5 109 5-124 161-270 (336)
146 PF01408 GFO_IDH_MocA: Oxidore 98.4 9.1E-06 2E-10 70.3 13.1 112 7-128 1-116 (120)
147 PRK08306 dipicolinate synthase 98.3 2.7E-06 5.9E-11 86.0 10.8 110 7-131 153-262 (296)
148 TIGR00507 aroE shikimate 5-deh 98.3 2E-06 4.2E-11 85.9 9.2 116 7-130 118-235 (270)
149 PRK06444 prephenate dehydrogen 98.3 2.1E-05 4.5E-10 74.6 15.6 124 7-190 1-131 (197)
150 cd05213 NAD_bind_Glutamyl_tRNA 98.3 3.9E-06 8.5E-11 85.5 10.5 95 6-108 178-274 (311)
151 COG1748 LYS9 Saccharopine dehy 98.2 1.8E-05 3.8E-10 82.1 14.3 127 6-139 1-131 (389)
152 PRK14188 bifunctional 5,10-met 98.2 2.9E-06 6.2E-11 85.2 8.0 73 7-110 159-233 (296)
153 PRK06223 malate dehydrogenase; 98.2 1E-05 2.2E-10 82.2 10.8 104 6-114 2-126 (307)
154 PF01488 Shikimate_DH: Shikima 98.2 4.6E-06 1E-10 74.3 7.2 97 6-108 12-110 (135)
155 TIGR00872 gnd_rel 6-phosphoglu 98.2 3.8E-06 8.2E-11 85.1 7.0 105 186-299 169-275 (298)
156 TIGR02371 ala_DH_arch alanine 98.1 1.4E-05 2.9E-10 82.0 9.8 97 7-112 129-227 (325)
157 COG0059 IlvC Ketol-acid reduct 98.1 1.7E-05 3.7E-10 78.2 9.0 86 7-104 19-106 (338)
158 PTZ00082 L-lactate dehydrogena 98.0 4.6E-05 9.9E-10 77.9 12.2 105 1-110 1-131 (321)
159 COG1712 Predicted dinucleotide 98.0 6.6E-05 1.4E-09 71.1 12.2 120 7-137 1-125 (255)
160 smart00859 Semialdhyde_dh Semi 98.0 1.8E-05 3.9E-10 69.0 7.5 98 8-110 1-102 (122)
161 COG0569 TrkA K+ transport syst 98.0 0.00011 2.5E-09 71.2 13.6 99 7-109 1-103 (225)
162 PRK14179 bifunctional 5,10-met 98.0 1.5E-05 3.1E-10 79.5 7.4 74 7-110 159-233 (284)
163 TIGR01763 MalateDH_bact malate 98.0 4E-05 8.7E-10 77.8 10.8 106 7-117 2-128 (305)
164 PF01113 DapB_N: Dihydrodipico 98.0 4.2E-05 9.1E-10 67.1 8.8 107 7-124 1-115 (124)
165 PRK09310 aroDE bifunctional 3- 97.9 4.8E-05 1E-09 81.9 9.9 105 7-130 333-437 (477)
166 PRK05225 ketol-acid reductoiso 97.9 2.3E-05 5E-10 82.0 7.1 87 7-105 37-129 (487)
167 PLN00203 glutamyl-tRNA reducta 97.9 5.2E-05 1.1E-09 82.1 10.0 99 6-108 266-370 (519)
168 cd05292 LDH_2 A subgroup of L- 97.9 0.00016 3.6E-09 73.5 12.7 97 7-108 1-117 (308)
169 PRK06407 ornithine cyclodeamin 97.9 9E-05 2E-09 75.1 10.6 117 7-131 118-236 (301)
170 PRK08618 ornithine cyclodeamin 97.9 9.3E-05 2E-09 75.9 10.8 116 7-131 128-245 (325)
171 TIGR01921 DAP-DH diaminopimela 97.8 0.00013 2.8E-09 74.0 11.4 87 6-108 3-92 (324)
172 PF00670 AdoHcyase_NAD: S-aden 97.8 9.1E-05 2E-09 67.5 9.2 91 7-111 24-114 (162)
173 TIGR01035 hemA glutamyl-tRNA r 97.8 7.6E-05 1.6E-09 79.1 10.0 94 7-107 181-277 (417)
174 PTZ00075 Adenosylhomocysteinas 97.8 0.00015 3.2E-09 77.1 12.0 89 7-110 255-344 (476)
175 KOG2711 Glycerol-3-phosphate d 97.8 0.00025 5.5E-09 71.1 12.9 101 7-111 22-143 (372)
176 PRK07340 ornithine cyclodeamin 97.8 0.00012 2.6E-09 74.4 10.7 96 7-113 126-223 (304)
177 TIGR00518 alaDH alanine dehydr 97.8 7.4E-05 1.6E-09 77.9 9.2 98 7-108 168-268 (370)
178 cd01339 LDH-like_MDH L-lactate 97.8 0.0001 2.2E-09 74.8 9.8 101 9-114 1-122 (300)
179 PRK13301 putative L-aspartate 97.8 0.00021 4.5E-09 70.2 11.6 119 6-138 2-128 (267)
180 PRK00045 hemA glutamyl-tRNA re 97.8 6E-05 1.3E-09 80.1 8.4 94 7-108 183-281 (423)
181 TIGR00936 ahcY adenosylhomocys 97.8 0.0002 4.3E-09 75.1 12.0 100 7-121 196-297 (406)
182 PRK08291 ectoine utilization p 97.8 0.001 2.2E-08 68.3 16.8 96 7-110 133-230 (330)
183 PRK06823 ornithine cyclodeamin 97.8 0.00018 3.9E-09 73.3 10.9 97 7-112 129-227 (315)
184 cd05297 GH4_alpha_glucosidase_ 97.7 0.0002 4.4E-09 76.0 11.4 74 7-83 1-85 (423)
185 PRK13303 L-aspartate dehydroge 97.7 0.00026 5.6E-09 70.5 11.4 119 6-138 1-127 (265)
186 TIGR02992 ectoine_eutC ectoine 97.7 0.00017 3.7E-09 74.0 10.3 96 7-110 130-227 (326)
187 PF02254 TrkA_N: TrkA-N domain 97.7 0.00048 1E-08 59.1 11.2 111 9-129 1-113 (116)
188 PRK00258 aroE shikimate 5-dehy 97.7 9.6E-05 2.1E-09 74.1 7.8 116 7-129 124-241 (278)
189 cd01483 E1_enzyme_family Super 97.7 0.00022 4.9E-09 63.9 9.4 122 8-135 1-124 (143)
190 PLN02819 lysine-ketoglutarate 97.7 0.00052 1.1E-08 79.6 14.3 121 6-133 569-705 (1042)
191 COG2423 Predicted ornithine cy 97.7 0.0011 2.4E-08 67.7 15.0 118 7-132 131-250 (330)
192 TIGR01809 Shik-DH-AROM shikima 97.7 0.00044 9.6E-09 69.4 11.9 119 7-129 126-251 (282)
193 cd01078 NAD_bind_H4MPT_DH NADP 97.7 0.00036 7.9E-09 65.9 10.6 102 6-110 28-132 (194)
194 PTZ00117 malate dehydrogenase; 97.7 0.00041 8.8E-09 71.0 11.6 104 6-114 5-129 (319)
195 PRK05476 S-adenosyl-L-homocyst 97.6 0.00029 6.3E-09 74.3 10.6 90 7-111 213-303 (425)
196 PRK00048 dihydrodipicolinate r 97.6 0.00032 7E-09 69.5 10.3 92 6-111 1-95 (257)
197 PLN02494 adenosylhomocysteinas 97.6 0.00037 8.1E-09 73.9 11.0 96 7-117 255-352 (477)
198 COG0373 HemA Glutamyl-tRNA red 97.6 0.00034 7.3E-09 73.1 10.5 95 6-108 178-275 (414)
199 PRK12549 shikimate 5-dehydroge 97.6 0.00018 3.9E-09 72.3 8.2 117 7-130 128-248 (284)
200 cd05291 HicDH_like L-2-hydroxy 97.6 0.00066 1.4E-08 69.0 12.1 98 7-110 1-120 (306)
201 PRK10669 putative cation:proto 97.6 0.00074 1.6E-08 74.4 13.3 116 7-132 418-535 (558)
202 PF03435 Saccharop_dh: Sacchar 97.6 0.001 2.2E-08 69.8 13.5 122 9-138 1-129 (386)
203 COG0673 MviM Predicted dehydro 97.6 0.00094 2E-08 68.5 12.9 113 5-128 2-121 (342)
204 PRK03562 glutathione-regulated 97.5 0.0013 2.9E-08 73.2 14.7 117 7-133 401-519 (621)
205 TIGR00036 dapB dihydrodipicoli 97.5 0.00085 1.8E-08 66.8 11.9 116 7-130 2-123 (266)
206 PRK03659 glutathione-regulated 97.5 0.0011 2.4E-08 73.6 13.7 113 7-129 401-515 (601)
207 PRK06046 alanine dehydrogenase 97.5 0.00046 1E-08 70.8 9.9 97 7-112 130-228 (326)
208 TIGR01761 thiaz-red thiazoliny 97.5 0.0011 2.4E-08 68.2 12.7 110 6-129 3-119 (343)
209 cd00401 AdoHcyase S-adenosyl-L 97.5 0.00059 1.3E-08 71.8 10.4 88 7-109 203-291 (413)
210 PF02423 OCD_Mu_crystall: Orni 97.5 0.00041 8.9E-09 70.7 8.9 99 7-112 129-229 (313)
211 PF01118 Semialdhyde_dh: Semia 97.4 0.00042 9.1E-09 60.4 7.4 95 8-110 1-100 (121)
212 cd00650 LDH_MDH_like NAD-depen 97.4 0.00061 1.3E-08 67.7 9.3 105 9-117 1-129 (263)
213 PF00056 Ldh_1_N: lactate/mala 97.4 0.0011 2.4E-08 59.5 10.0 98 7-109 1-120 (141)
214 PF13380 CoA_binding_2: CoA bi 97.4 0.0003 6.5E-09 61.0 6.1 104 8-132 2-109 (116)
215 PRK07589 ornithine cyclodeamin 97.4 0.00094 2E-08 68.9 10.8 99 7-112 130-230 (346)
216 PRK11579 putative oxidoreducta 97.4 0.0021 4.6E-08 66.4 13.4 110 6-128 4-118 (346)
217 KOG3124 Pyrroline-5-carboxylat 97.4 0.0016 3.5E-08 63.1 11.5 144 7-166 1-153 (267)
218 PRK00436 argC N-acetyl-gamma-g 97.4 0.00059 1.3E-08 70.5 8.5 101 5-112 1-104 (343)
219 cd01080 NAD_bind_m-THF_DH_Cycl 97.4 0.00071 1.5E-08 62.6 8.0 74 7-110 45-119 (168)
220 PRK09496 trkA potassium transp 97.4 0.0019 4.1E-08 69.1 12.6 98 7-108 1-101 (453)
221 PRK13940 glutamyl-tRNA reducta 97.3 0.00041 8.8E-09 73.3 7.1 73 7-85 182-255 (414)
222 KOG2741 Dimeric dihydrodiol de 97.3 0.0032 6.9E-08 63.7 13.0 123 1-131 1-129 (351)
223 cd05211 NAD_bind_Glu_Leu_Phe_V 97.3 0.0086 1.9E-07 57.8 15.5 176 6-224 23-211 (217)
224 PRK00066 ldh L-lactate dehydro 97.3 0.0029 6.2E-08 64.6 12.7 99 6-109 6-124 (315)
225 PRK04148 hypothetical protein; 97.3 0.0018 3.8E-08 57.4 9.5 95 7-111 18-115 (134)
226 COG5495 Uncharacterized conser 97.3 0.001 2.2E-08 63.3 8.3 190 6-219 10-207 (289)
227 COG2910 Putative NADH-flavin r 97.3 0.0013 2.8E-08 60.7 8.4 72 7-83 1-73 (211)
228 cd05293 LDH_1 A subgroup of L- 97.2 0.0032 7E-08 64.1 12.0 100 6-110 3-123 (312)
229 PRK06270 homoserine dehydrogen 97.2 0.0021 4.6E-08 66.3 10.8 131 6-137 2-157 (341)
230 cd00300 LDH_like L-lactate deh 97.2 0.0032 7E-08 63.8 11.6 96 9-109 1-117 (300)
231 PRK06199 ornithine cyclodeamin 97.2 0.0018 3.9E-08 67.7 9.8 97 7-108 156-260 (379)
232 cd05294 LDH-like_MDH_nadp A la 97.2 0.0026 5.7E-08 64.7 10.5 103 7-114 1-128 (309)
233 cd01076 NAD_bind_1_Glu_DH NAD( 97.1 0.0036 7.7E-08 60.9 10.7 115 6-130 31-157 (227)
234 PF01262 AlaDh_PNT_C: Alanine 97.1 0.00087 1.9E-08 62.0 6.0 98 7-108 21-140 (168)
235 COG0686 Ald Alanine dehydrogen 97.1 0.002 4.2E-08 64.2 8.7 97 7-107 169-268 (371)
236 PRK15076 alpha-galactosidase; 97.1 0.0023 5E-08 68.1 9.9 74 7-83 2-86 (431)
237 KOG0068 D-3-phosphoglycerate d 97.1 0.0026 5.7E-08 63.8 9.4 105 7-123 147-252 (406)
238 PRK08300 acetaldehyde dehydrog 97.1 0.0047 1E-07 62.3 11.3 95 6-110 4-104 (302)
239 TIGR02354 thiF_fam2 thiamine b 97.1 0.004 8.6E-08 59.3 10.3 33 6-38 21-54 (200)
240 TIGR01850 argC N-acetyl-gamma- 97.1 0.002 4.4E-08 66.6 8.8 98 7-111 1-103 (346)
241 PRK04207 glyceraldehyde-3-phos 97.1 0.0048 1E-07 63.7 11.4 97 6-109 1-111 (341)
242 PF14833 NAD_binding_11: NAD-b 97.0 0.015 3.3E-07 50.6 12.9 101 327-443 2-104 (122)
243 PRK09496 trkA potassium transp 97.0 0.0086 1.9E-07 64.0 13.6 115 6-130 231-348 (453)
244 PRK02318 mannitol-1-phosphate 97.0 0.0034 7.3E-08 65.9 9.8 104 7-111 1-126 (381)
245 PF13460 NAD_binding_10: NADH( 97.0 0.0048 1E-07 57.1 9.7 68 9-83 1-71 (183)
246 cd05191 NAD_bind_amino_acid_DH 96.9 0.0041 8.8E-08 50.7 7.8 63 6-107 23-86 (86)
247 cd05311 NAD_bind_2_malic_enz N 96.9 0.0056 1.2E-07 59.5 10.0 107 6-127 25-145 (226)
248 TIGR03215 ac_ald_DH_ac acetald 96.9 0.0056 1.2E-07 61.4 10.0 93 7-110 2-98 (285)
249 PRK00961 H(2)-dependent methyl 96.9 0.045 9.8E-07 53.7 15.2 148 56-218 128-280 (342)
250 TIGR00561 pntA NAD(P) transhyd 96.8 0.0051 1.1E-07 66.4 9.7 100 7-109 165-286 (511)
251 COG0002 ArgC Acetylglutamate s 96.8 0.0038 8.2E-08 63.4 8.2 102 5-113 1-107 (349)
252 COG0169 AroE Shikimate 5-dehyd 96.8 0.0047 1E-07 61.8 8.8 117 7-130 127-247 (283)
253 TIGR01723 hmd_TIGR 5,10-methen 96.8 0.044 9.6E-07 53.8 14.9 151 56-218 126-278 (340)
254 PRK01710 murD UDP-N-acetylmura 96.8 0.013 2.9E-07 62.9 12.6 114 7-128 15-146 (458)
255 PRK10206 putative oxidoreducta 96.8 0.013 2.9E-07 60.5 11.9 112 7-129 2-119 (344)
256 PRK06349 homoserine dehydrogen 96.8 0.0059 1.3E-07 65.0 9.3 120 6-136 3-135 (426)
257 PRK14175 bifunctional 5,10-met 96.7 0.0054 1.2E-07 61.4 8.2 74 7-110 159-233 (286)
258 PLN02602 lactate dehydrogenase 96.7 0.019 4.1E-07 59.4 12.1 99 7-110 38-157 (350)
259 TIGR02717 AcCoA-syn-alpha acet 96.7 0.0087 1.9E-07 64.1 9.9 107 7-131 8-127 (447)
260 PF02629 CoA_binding: CoA bind 96.7 0.0024 5.2E-08 53.3 4.4 79 7-95 4-84 (96)
261 TIGR02356 adenyl_thiF thiazole 96.6 0.021 4.6E-07 54.4 11.4 124 6-135 21-146 (202)
262 COG0771 MurD UDP-N-acetylmuram 96.6 0.015 3.3E-07 61.7 11.2 126 5-137 6-148 (448)
263 PRK06392 homoserine dehydrogen 96.6 0.01 2.2E-07 60.8 9.6 129 7-138 1-149 (326)
264 cd05290 LDH_3 A subgroup of L- 96.6 0.021 4.5E-07 58.1 11.8 98 8-110 1-122 (307)
265 PRK12548 shikimate 5-dehydroge 96.6 0.014 3E-07 58.9 10.5 120 7-129 127-256 (289)
266 PLN02968 Probable N-acetyl-gam 96.6 0.0043 9.4E-08 64.9 6.9 100 5-111 37-138 (381)
267 PRK14027 quinate/shikimate deh 96.6 0.012 2.5E-07 59.2 9.7 119 7-130 128-250 (283)
268 PRK12475 thiamine/molybdopteri 96.6 0.019 4.1E-07 59.2 11.4 124 6-135 24-151 (338)
269 PRK14189 bifunctional 5,10-met 96.6 0.0061 1.3E-07 60.9 7.6 74 7-110 159-233 (285)
270 PRK09424 pntA NAD(P) transhydr 96.6 0.014 3E-07 63.2 10.7 44 7-50 166-209 (509)
271 PRK14106 murD UDP-N-acetylmura 96.6 0.04 8.7E-07 58.9 14.1 115 6-125 5-134 (450)
272 PRK00141 murD UDP-N-acetylmura 96.5 0.037 8E-07 59.8 13.8 113 7-128 16-150 (473)
273 PRK08374 homoserine dehydrogen 96.5 0.074 1.6E-06 54.8 14.8 128 6-138 2-155 (336)
274 TIGR01019 sucCoAalpha succinyl 96.5 0.028 6E-07 56.5 11.3 116 6-135 6-124 (286)
275 TIGR01772 MDH_euk_gproteo mala 96.5 0.011 2.4E-07 60.2 8.6 96 8-110 1-119 (312)
276 COG1064 AdhP Zn-dependent alco 96.4 0.019 4.1E-07 58.7 10.0 93 7-109 168-261 (339)
277 PRK06718 precorrin-2 dehydroge 96.4 0.045 9.9E-07 52.2 11.9 79 7-94 11-91 (202)
278 cd01487 E1_ThiF_like E1_ThiF_l 96.4 0.01 2.3E-07 55.1 7.4 121 8-134 1-123 (174)
279 PRK05671 aspartate-semialdehyd 96.4 0.0078 1.7E-07 61.9 7.1 95 5-110 3-100 (336)
280 PRK12749 quinate/shikimate deh 96.4 0.026 5.6E-07 56.9 10.7 120 7-130 125-254 (288)
281 PF03447 NAD_binding_3: Homose 96.4 0.027 5.8E-07 48.5 9.4 105 13-128 1-114 (117)
282 PRK14874 aspartate-semialdehyd 96.3 0.0091 2E-07 61.5 7.3 92 6-110 1-97 (334)
283 PRK05678 succinyl-CoA syntheta 96.3 0.035 7.6E-07 55.9 11.3 117 6-135 8-126 (291)
284 PTZ00325 malate dehydrogenase; 96.3 0.031 6.8E-07 57.1 11.0 106 5-114 7-132 (321)
285 PRK05442 malate dehydrogenase; 96.3 0.043 9.3E-07 56.3 12.0 100 6-110 4-133 (326)
286 PRK00683 murD UDP-N-acetylmura 96.3 0.036 7.8E-07 58.8 11.9 110 7-126 4-129 (418)
287 PRK08328 hypothetical protein; 96.3 0.026 5.6E-07 55.0 10.0 121 6-135 27-153 (231)
288 cd01337 MDH_glyoxysomal_mitoch 96.3 0.019 4.1E-07 58.4 9.3 99 7-110 1-120 (310)
289 PRK00421 murC UDP-N-acetylmura 96.3 0.05 1.1E-06 58.5 12.9 114 3-126 4-134 (461)
290 PRK03369 murD UDP-N-acetylmura 96.3 0.046 9.9E-07 59.3 12.6 112 7-128 13-146 (488)
291 PF00899 ThiF: ThiF family; I 96.3 0.0057 1.2E-07 54.2 4.7 123 7-135 3-127 (135)
292 PRK05086 malate dehydrogenase; 96.2 0.036 7.9E-07 56.5 11.0 97 7-110 1-121 (312)
293 PRK10792 bifunctional 5,10-met 96.2 0.015 3.4E-07 58.0 8.0 74 7-110 160-234 (285)
294 PLN00106 malate dehydrogenase 96.2 0.024 5.2E-07 58.0 9.6 100 7-110 19-138 (323)
295 CHL00194 ycf39 Ycf39; Provisio 96.2 0.018 4E-07 58.5 8.6 70 7-81 1-73 (317)
296 cd01338 MDH_choloroplast_like 96.1 0.031 6.7E-07 57.3 9.9 98 7-109 3-130 (322)
297 PLN02477 glutamate dehydrogena 96.1 0.042 9.2E-07 57.9 10.9 114 7-130 207-332 (410)
298 PRK09414 glutamate dehydrogena 96.1 0.041 8.9E-07 58.5 10.8 117 7-130 233-365 (445)
299 PF03720 UDPG_MGDP_dh_C: UDP-g 96.1 0.028 6.1E-07 47.8 7.7 86 17-110 18-104 (106)
300 COG2344 AT-rich DNA-binding pr 96.1 0.016 3.5E-07 53.7 6.5 83 5-95 83-168 (211)
301 COG0460 ThrA Homoserine dehydr 96.1 0.056 1.2E-06 55.1 11.0 124 6-138 3-146 (333)
302 PRK14192 bifunctional 5,10-met 96.0 0.018 3.9E-07 57.8 7.4 73 7-109 160-233 (283)
303 PRK12490 6-phosphogluconate de 96.0 0.016 3.5E-07 58.6 7.2 75 219-299 201-276 (299)
304 PRK06719 precorrin-2 dehydroge 96.0 0.049 1.1E-06 49.8 9.6 77 7-94 14-91 (157)
305 PRK01390 murD UDP-N-acetylmura 96.0 0.094 2E-06 56.3 13.4 113 7-129 10-144 (460)
306 TIGR01759 MalateDH-SF1 malate 96.0 0.098 2.1E-06 53.6 12.8 98 7-109 4-131 (323)
307 PRK05472 redox-sensing transcr 96.0 0.011 2.3E-07 56.9 5.4 80 7-94 85-167 (213)
308 PRK14982 acyl-ACP reductase; P 96.0 0.02 4.3E-07 58.9 7.6 111 6-134 155-268 (340)
309 cd01485 E1-1_like Ubiquitin ac 96.0 0.026 5.5E-07 53.7 7.8 125 6-135 19-148 (198)
310 PRK11861 bifunctional prephena 96.0 0.042 9.1E-07 62.0 10.8 108 76-190 1-121 (673)
311 PRK03803 murD UDP-N-acetylmura 95.9 0.11 2.4E-06 55.5 13.6 121 8-137 8-146 (448)
312 PF05368 NmrA: NmrA-like famil 95.9 0.025 5.5E-07 54.6 7.9 70 9-82 1-74 (233)
313 PLN00112 malate dehydrogenase 95.9 0.072 1.6E-06 56.7 11.7 99 7-109 101-228 (444)
314 TIGR01470 cysG_Nterm siroheme 95.9 0.093 2E-06 50.2 11.5 72 7-89 10-85 (205)
315 PRK07688 thiamine/molybdopteri 95.9 0.054 1.2E-06 55.9 10.5 124 6-135 24-151 (339)
316 PF00984 UDPG_MGDP_dh: UDP-glu 95.9 0.062 1.3E-06 44.9 8.9 87 183-289 3-89 (96)
317 PRK02472 murD UDP-N-acetylmura 95.9 0.16 3.4E-06 54.3 14.4 115 7-128 6-137 (447)
318 PRK02006 murD UDP-N-acetylmura 95.9 0.14 3E-06 55.6 14.1 116 7-128 8-150 (498)
319 PRK07454 short chain dehydroge 95.9 0.051 1.1E-06 52.5 9.7 47 1-47 1-48 (241)
320 PRK08644 thiamine biosynthesis 95.8 0.028 6E-07 54.0 7.5 121 6-132 28-150 (212)
321 PRK15059 tartronate semialdehy 95.8 0.06 1.3E-06 54.3 10.3 104 326-444 163-266 (292)
322 PF02882 THF_DHG_CYH_C: Tetrah 95.8 0.032 7E-07 51.1 7.3 75 7-111 37-112 (160)
323 cd00704 MDH Malate dehydrogena 95.8 0.047 1E-06 56.0 9.3 99 8-109 2-128 (323)
324 PRK01438 murD UDP-N-acetylmura 95.8 0.11 2.4E-06 56.1 12.8 111 7-128 17-151 (480)
325 PRK14191 bifunctional 5,10-met 95.7 0.046 1E-06 54.7 8.5 74 7-110 158-232 (285)
326 COG0039 Mdh Malate/lactate deh 95.7 0.065 1.4E-06 54.3 9.6 98 7-110 1-121 (313)
327 COG0289 DapB Dihydrodipicolina 95.6 0.12 2.5E-06 50.8 10.9 108 6-124 2-117 (266)
328 PRK12550 shikimate 5-dehydroge 95.6 0.071 1.5E-06 53.3 9.6 109 7-130 123-237 (272)
329 TIGR01087 murD UDP-N-acetylmur 95.6 0.14 3.1E-06 54.5 12.4 121 8-137 1-140 (433)
330 TIGR01757 Malate-DH_plant mala 95.6 0.13 2.7E-06 54.0 11.6 100 7-110 45-173 (387)
331 cd05313 NAD_bind_2_Glu_DH NAD( 95.5 0.21 4.7E-06 49.2 12.5 117 7-130 39-175 (254)
332 cd01492 Aos1_SUMO Ubiquitin ac 95.5 0.049 1.1E-06 51.7 7.7 123 6-135 21-145 (197)
333 PRK05884 short chain dehydroge 95.5 0.31 6.7E-06 46.8 13.3 42 7-48 1-43 (223)
334 PRK11863 N-acetyl-gamma-glutam 95.5 0.041 8.9E-07 55.9 7.4 82 5-110 1-84 (313)
335 PRK11559 garR tartronate semia 95.5 0.11 2.4E-06 52.2 10.7 104 326-444 166-269 (296)
336 cd01336 MDH_cytoplasmic_cytoso 95.4 0.088 1.9E-06 54.0 9.9 97 7-108 3-129 (325)
337 PRK14176 bifunctional 5,10-met 95.4 0.051 1.1E-06 54.4 7.7 73 7-109 165-238 (287)
338 PLN02383 aspartate semialdehyd 95.4 0.046 1E-06 56.5 7.6 91 5-110 6-103 (344)
339 PRK04308 murD UDP-N-acetylmura 95.3 0.27 5.8E-06 52.6 13.7 115 6-128 5-139 (445)
340 PRK10537 voltage-gated potassi 95.3 0.22 4.8E-06 52.4 12.6 112 8-132 242-356 (393)
341 TIGR01082 murC UDP-N-acetylmur 95.3 0.19 4.1E-06 53.8 12.5 108 8-126 1-126 (448)
342 TIGR02355 moeB molybdopterin s 95.3 0.061 1.3E-06 52.7 8.0 124 6-135 24-149 (240)
343 cd05212 NAD_bind_m-THF_DH_Cycl 95.3 0.095 2.1E-06 47.0 8.5 74 7-110 29-103 (140)
344 cd00757 ThiF_MoeB_HesA_family 95.3 0.18 3.9E-06 49.0 11.0 124 6-135 21-146 (228)
345 cd01079 NAD_bind_m-THF_DH NAD 95.3 0.052 1.1E-06 51.1 6.9 91 7-110 63-159 (197)
346 PRK08664 aspartate-semialdehyd 95.3 0.074 1.6E-06 55.1 8.7 97 6-110 3-110 (349)
347 PRK05653 fabG 3-ketoacyl-(acyl 95.3 0.11 2.5E-06 49.8 9.6 84 7-109 6-92 (246)
348 PRK00676 hemA glutamyl-tRNA re 95.2 0.044 9.4E-07 56.2 6.8 35 6-40 174-209 (338)
349 PRK14183 bifunctional 5,10-met 95.2 0.064 1.4E-06 53.5 7.7 74 7-110 158-232 (281)
350 PRK08223 hypothetical protein; 95.2 0.081 1.8E-06 53.0 8.5 125 6-135 27-154 (287)
351 TIGR03649 ergot_EASG ergot alk 95.2 0.079 1.7E-06 52.8 8.6 68 8-82 1-77 (285)
352 PLN02520 bifunctional 3-dehydr 95.2 0.14 3E-06 56.1 11.1 113 7-129 380-495 (529)
353 COG0300 DltE Short-chain dehyd 95.2 0.1 2.2E-06 51.7 9.0 89 3-107 3-92 (265)
354 PRK07523 gluconate 5-dehydroge 95.1 0.13 2.8E-06 50.2 9.7 84 7-109 11-97 (255)
355 PRK07326 short chain dehydroge 95.1 0.12 2.7E-06 49.5 9.5 41 7-47 7-48 (237)
356 KOG1683 Hydroxyacyl-CoA dehydr 95.1 0.096 2.1E-06 53.5 8.7 187 17-227 1-208 (380)
357 PRK06180 short chain dehydroge 95.1 0.14 3.1E-06 50.7 10.1 83 7-109 5-88 (277)
358 PRK02705 murD UDP-N-acetylmura 95.1 0.28 6E-06 52.6 12.9 116 8-128 2-138 (459)
359 PRK14573 bifunctional D-alanyl 95.1 0.22 4.9E-06 57.4 12.8 111 6-126 4-131 (809)
360 PRK08762 molybdopterin biosynt 95.1 0.17 3.6E-06 53.0 10.8 124 6-135 135-260 (376)
361 PRK05690 molybdopterin biosynt 95.1 0.12 2.6E-06 50.8 9.1 124 6-135 32-157 (245)
362 PRK05993 short chain dehydroge 95.0 0.15 3.2E-06 50.7 10.0 41 6-46 4-45 (277)
363 PRK11908 NAD-dependent epimera 95.0 0.14 3.1E-06 52.5 10.2 40 6-45 1-42 (347)
364 PLN00141 Tic62-NAD(P)-related 95.0 0.097 2.1E-06 51.2 8.5 41 6-46 17-58 (251)
365 TIGR01771 L-LDH-NAD L-lactate 95.0 0.15 3.2E-06 51.7 10.0 94 11-109 1-115 (299)
366 PRK12828 short chain dehydroge 95.0 0.23 4.9E-06 47.5 10.9 84 7-109 8-92 (239)
367 PRK13394 3-hydroxybutyrate deh 95.0 0.13 2.8E-06 50.2 9.3 84 7-109 8-94 (262)
368 TIGR01546 GAPDH-II_archae glyc 95.0 0.15 3.2E-06 52.3 9.8 39 9-47 1-41 (333)
369 TIGR00978 asd_EA aspartate-sem 95.0 0.09 1.9E-06 54.3 8.4 97 7-110 1-107 (341)
370 PRK08265 short chain dehydroge 95.0 0.19 4.2E-06 49.3 10.5 47 1-47 1-48 (261)
371 PRK07774 short chain dehydroge 94.9 0.15 3.3E-06 49.3 9.5 87 6-109 6-93 (250)
372 PRK14030 glutamate dehydrogena 94.9 0.22 4.7E-06 53.0 11.1 117 7-130 229-365 (445)
373 TIGR01296 asd_B aspartate-semi 94.9 0.048 1E-06 56.3 6.2 90 8-110 1-95 (339)
374 PRK10538 malonic semialdehyde 94.9 0.19 4E-06 48.9 10.0 82 7-108 1-83 (248)
375 PRK03806 murD UDP-N-acetylmura 94.9 0.46 9.9E-06 50.7 13.8 114 6-128 6-134 (438)
376 PRK05597 molybdopterin biosynt 94.9 0.27 5.9E-06 51.1 11.6 124 6-135 28-153 (355)
377 PRK07236 hypothetical protein; 94.8 0.039 8.5E-07 57.7 5.3 40 1-40 1-40 (386)
378 PRK08163 salicylate hydroxylas 94.8 0.034 7.5E-07 58.1 4.9 36 5-40 3-38 (396)
379 PRK12409 D-amino acid dehydrog 94.8 0.034 7.3E-07 58.6 4.8 33 7-39 2-34 (410)
380 PF10100 DUF2338: Uncharacteri 94.8 1.7 3.7E-05 45.3 16.7 159 6-169 1-196 (429)
381 PRK12939 short chain dehydroge 94.8 0.18 3.9E-06 48.7 9.5 86 7-109 8-94 (250)
382 PRK14173 bifunctional 5,10-met 94.8 0.11 2.5E-06 51.9 8.1 74 7-110 156-230 (287)
383 PRK14178 bifunctional 5,10-met 94.8 0.1 2.2E-06 52.1 7.6 74 7-110 153-227 (279)
384 PRK08773 2-octaprenyl-3-methyl 94.7 0.041 8.9E-07 57.6 5.1 40 1-40 1-40 (392)
385 PLN02353 probable UDP-glucose 94.7 0.27 5.8E-06 53.0 11.4 116 7-132 325-466 (473)
386 PRK08040 putative semialdehyde 94.7 0.06 1.3E-06 55.4 6.2 94 5-110 3-100 (336)
387 PRK14170 bifunctional 5,10-met 94.7 0.13 2.7E-06 51.5 8.1 74 7-110 158-232 (284)
388 TIGR01758 MDH_euk_cyt malate d 94.7 0.15 3.2E-06 52.3 8.9 99 8-109 1-127 (324)
389 PRK14177 bifunctional 5,10-met 94.7 0.13 2.8E-06 51.5 8.1 74 7-110 160-234 (284)
390 PRK06200 2,3-dihydroxy-2,3-dih 94.6 0.28 6.1E-06 48.1 10.6 83 7-109 7-90 (263)
391 PRK14172 bifunctional 5,10-met 94.6 0.12 2.6E-06 51.5 7.8 74 7-110 159-233 (278)
392 PRK14186 bifunctional 5,10-met 94.6 0.12 2.7E-06 51.9 8.0 74 7-110 159-233 (297)
393 PRK01368 murD UDP-N-acetylmura 94.6 0.42 9.2E-06 51.3 12.6 122 5-135 5-140 (454)
394 PRK08309 short chain dehydroge 94.6 0.39 8.4E-06 44.8 10.7 41 7-47 1-41 (177)
395 PRK12826 3-ketoacyl-(acyl-carr 94.5 0.18 3.9E-06 48.7 8.9 47 1-47 1-48 (251)
396 PRK07067 sorbitol dehydrogenas 94.5 0.29 6.3E-06 47.7 10.4 82 7-108 7-89 (257)
397 cd05197 GH4_glycoside_hydrolas 94.5 0.49 1.1E-05 50.3 12.7 74 7-83 1-85 (425)
398 TIGR03736 PRTRC_ThiF PRTRC sys 94.5 0.24 5.3E-06 48.5 9.6 34 6-39 11-55 (244)
399 PLN03209 translocon at the inn 94.5 0.78 1.7E-05 50.4 14.3 74 8-81 82-168 (576)
400 PRK08017 oxidoreductase; Provi 94.5 0.25 5.5E-06 47.9 9.9 40 7-46 3-43 (256)
401 PRK14852 hypothetical protein; 94.4 0.16 3.4E-06 58.7 9.2 125 6-135 332-459 (989)
402 PRK12429 3-hydroxybutyrate deh 94.4 0.24 5.1E-06 48.1 9.4 86 7-109 5-91 (258)
403 TIGR01851 argC_other N-acetyl- 94.4 0.12 2.6E-06 52.3 7.4 81 7-110 2-83 (310)
404 PRK08306 dipicolinate synthase 94.4 0.19 4.2E-06 50.8 9.0 108 7-132 3-121 (296)
405 PRK14169 bifunctional 5,10-met 94.4 0.14 3.1E-06 51.1 7.9 74 7-110 157-231 (282)
406 PRK06139 short chain dehydroge 94.4 0.28 6E-06 50.4 10.3 83 7-108 8-93 (330)
407 cd05296 GH4_P_beta_glucosidase 94.4 0.56 1.2E-05 49.8 12.7 74 7-83 1-86 (419)
408 PRK14166 bifunctional 5,10-met 94.4 0.15 3.2E-06 51.0 7.9 74 7-110 158-232 (282)
409 TIGR01505 tartro_sem_red 2-hyd 94.4 0.28 6E-06 49.3 10.1 104 326-444 163-266 (291)
410 PRK14180 bifunctional 5,10-met 94.4 0.15 3.2E-06 51.1 7.8 74 7-110 159-233 (282)
411 PRK07074 short chain dehydroge 94.4 0.34 7.3E-06 47.2 10.5 84 7-109 3-87 (257)
412 TIGR03325 BphB_TodD cis-2,3-di 94.4 0.3 6.5E-06 47.9 10.1 41 7-47 6-47 (262)
413 PRK14851 hypothetical protein; 94.3 0.17 3.6E-06 57.0 9.0 125 6-135 43-170 (679)
414 PRK14187 bifunctional 5,10-met 94.3 0.15 3.3E-06 51.2 7.8 74 7-110 161-235 (294)
415 PRK07877 hypothetical protein; 94.3 0.16 3.5E-06 57.3 8.8 124 6-136 107-232 (722)
416 PRK08340 glucose-1-dehydrogena 94.3 0.35 7.6E-06 47.3 10.3 84 7-108 1-85 (259)
417 PRK12936 3-ketoacyl-(acyl-carr 94.3 0.38 8.3E-06 46.2 10.5 84 6-109 6-90 (245)
418 PRK06482 short chain dehydroge 94.2 0.33 7.1E-06 48.0 10.2 83 7-109 3-86 (276)
419 TIGR01692 HIBADH 3-hydroxyisob 94.2 0.29 6.2E-06 49.2 9.8 106 326-444 160-270 (288)
420 PF00208 ELFV_dehydrog: Glutam 94.2 0.21 4.6E-06 49.0 8.6 118 6-130 32-168 (244)
421 PRK06728 aspartate-semialdehyd 94.2 0.13 2.9E-06 53.0 7.3 94 1-110 1-102 (347)
422 PRK12825 fabG 3-ketoacyl-(acyl 94.2 0.29 6.3E-06 46.9 9.4 40 1-40 1-41 (249)
423 PRK06182 short chain dehydroge 94.2 0.39 8.4E-06 47.4 10.5 79 7-108 4-83 (273)
424 TIGR02964 xanthine_xdhC xanthi 94.2 0.56 1.2E-05 46.2 11.4 112 7-126 101-212 (246)
425 PLN00016 RNA-binding protein; 94.2 0.23 4.9E-06 51.9 9.2 37 5-41 51-92 (378)
426 PRK07878 molybdopterin biosynt 94.2 0.21 4.5E-06 52.7 8.9 124 6-135 42-167 (392)
427 PRK06847 hypothetical protein; 94.2 0.059 1.3E-06 55.9 4.8 36 5-40 3-38 (375)
428 COG2084 MmsB 3-hydroxyisobutyr 94.1 0.44 9.5E-06 47.8 10.7 104 326-445 165-269 (286)
429 PRK07024 short chain dehydroge 94.1 0.34 7.3E-06 47.4 9.9 85 7-109 3-88 (257)
430 COG0026 PurK Phosphoribosylami 94.1 0.076 1.7E-06 54.5 5.3 38 6-43 1-38 (375)
431 cd05298 GH4_GlvA_pagL_like Gly 94.1 0.57 1.2E-05 50.0 12.2 74 7-83 1-85 (437)
432 PRK06185 hypothetical protein; 94.1 0.065 1.4E-06 56.3 5.1 40 1-40 1-40 (407)
433 PRK05693 short chain dehydroge 94.1 0.4 8.7E-06 47.3 10.5 80 7-109 2-82 (274)
434 PRK12829 short chain dehydroge 94.1 0.34 7.4E-06 47.2 9.9 85 7-110 12-97 (264)
435 PRK14190 bifunctional 5,10-met 94.1 0.18 3.9E-06 50.5 7.9 74 7-110 159-233 (284)
436 PRK06505 enoyl-(acyl carrier p 94.1 0.38 8.3E-06 47.7 10.3 40 1-40 1-44 (271)
437 PRK15461 NADH-dependent gamma- 94.1 0.29 6.2E-06 49.5 9.5 102 326-443 165-268 (296)
438 COG1063 Tdh Threonine dehydrog 94.1 0.35 7.7E-06 50.1 10.3 94 8-109 171-271 (350)
439 PLN02516 methylenetetrahydrofo 94.0 0.19 4.1E-06 50.7 7.9 74 7-110 168-242 (299)
440 PRK06194 hypothetical protein; 94.0 0.41 8.8E-06 47.5 10.3 84 7-109 7-93 (287)
441 COG2242 CobL Precorrin-6B meth 94.0 0.8 1.7E-05 42.8 11.3 123 9-137 38-165 (187)
442 PRK08267 short chain dehydroge 94.0 0.45 9.8E-06 46.5 10.5 41 7-47 2-43 (260)
443 PRK00711 D-amino acid dehydrog 94.0 0.064 1.4E-06 56.5 4.7 34 7-40 1-34 (416)
444 PRK14193 bifunctional 5,10-met 94.0 0.21 4.5E-06 50.0 8.0 74 7-110 159-235 (284)
445 PRK05600 thiamine biosynthesis 94.0 0.52 1.1E-05 49.3 11.3 124 6-135 41-166 (370)
446 PRK06079 enoyl-(acyl carrier p 93.9 0.34 7.4E-06 47.4 9.5 88 1-108 1-92 (252)
447 PRK14171 bifunctional 5,10-met 93.9 0.2 4.3E-06 50.3 7.6 73 7-109 160-233 (288)
448 PRK07478 short chain dehydroge 93.9 0.36 7.8E-06 47.0 9.5 41 7-47 7-48 (254)
449 PF00289 CPSase_L_chain: Carba 93.8 0.64 1.4E-05 39.8 9.8 100 6-132 2-106 (110)
450 PRK06172 short chain dehydroge 93.8 0.38 8.2E-06 46.7 9.6 41 7-47 8-49 (253)
451 PRK04663 murD UDP-N-acetylmura 93.8 0.78 1.7E-05 49.0 12.7 113 7-129 8-138 (438)
452 COG2227 UbiG 2-polyprenyl-3-me 93.8 0.39 8.5E-06 46.6 9.2 94 7-106 61-160 (243)
453 PRK06500 short chain dehydroge 93.8 0.51 1.1E-05 45.5 10.4 41 7-47 7-48 (249)
454 PRK14182 bifunctional 5,10-met 93.8 0.22 4.9E-06 49.7 7.8 74 7-110 158-232 (282)
455 PRK07109 short chain dehydroge 93.8 0.42 9.1E-06 49.1 10.2 83 8-109 10-95 (334)
456 PRK07890 short chain dehydroge 93.7 0.38 8.2E-06 46.8 9.4 86 7-109 6-92 (258)
457 PRK06153 hypothetical protein; 93.7 0.43 9.3E-06 49.7 10.0 118 7-133 177-299 (393)
458 PRK06720 hypothetical protein; 93.7 0.53 1.1E-05 43.5 9.8 38 9-46 19-57 (169)
459 COG0074 SucD Succinyl-CoA synt 93.7 0.3 6.6E-06 48.3 8.4 115 5-131 7-122 (293)
460 PRK08643 acetoin reductase; Va 93.7 0.37 8E-06 46.9 9.2 83 8-109 4-89 (256)
461 PRK05868 hypothetical protein; 93.7 0.076 1.7E-06 55.4 4.5 35 6-40 1-35 (372)
462 PRK07825 short chain dehydroge 93.6 0.57 1.2E-05 46.1 10.6 41 7-47 6-47 (273)
463 PRK06124 gluconate 5-dehydroge 93.6 0.46 9.9E-06 46.2 9.7 86 7-109 12-98 (256)
464 COG0334 GdhA Glutamate dehydro 93.6 0.4 8.8E-06 50.0 9.5 108 7-130 208-333 (411)
465 PRK06753 hypothetical protein; 93.6 0.082 1.8E-06 54.8 4.6 34 7-40 1-34 (373)
466 PF13450 NAD_binding_8: NAD(P) 93.6 0.11 2.3E-06 40.4 4.1 30 11-40 1-30 (68)
467 TIGR03366 HpnZ_proposed putati 93.6 0.69 1.5E-05 46.0 11.1 94 7-108 122-219 (280)
468 PF03059 NAS: Nicotianamine sy 93.5 0.29 6.4E-06 48.8 8.2 99 7-108 122-231 (276)
469 PRK07063 short chain dehydroge 93.5 0.43 9.4E-06 46.6 9.4 84 8-108 9-95 (260)
470 PRK05866 short chain dehydroge 93.5 0.4 8.8E-06 48.2 9.3 86 7-109 41-127 (293)
471 TIGR02853 spore_dpaA dipicolin 93.5 0.94 2E-05 45.6 11.9 106 7-130 2-118 (287)
472 KOG1399 Flavin-containing mono 93.5 0.088 1.9E-06 56.2 4.6 37 4-40 4-40 (448)
473 PRK15116 sulfur acceptor prote 93.4 0.66 1.4E-05 46.2 10.5 122 6-132 30-153 (268)
474 PLN02616 tetrahydrofolate dehy 93.4 0.26 5.6E-06 50.8 7.7 74 7-110 232-306 (364)
475 PRK06019 phosphoribosylaminoim 93.4 0.16 3.4E-06 53.1 6.4 36 6-41 2-37 (372)
476 PRK11728 hydroxyglutarate oxid 93.4 0.094 2E-06 55.0 4.7 34 6-39 2-37 (393)
477 PRK03815 murD UDP-N-acetylmura 93.4 0.51 1.1E-05 49.9 10.2 108 7-126 1-116 (401)
478 PF01494 FAD_binding_3: FAD bi 93.4 0.086 1.9E-06 53.5 4.3 34 7-40 2-35 (356)
479 PRK06057 short chain dehydroge 93.4 0.63 1.4E-05 45.3 10.3 41 7-47 8-49 (255)
480 PRK08589 short chain dehydroge 93.3 0.59 1.3E-05 46.2 10.2 85 7-109 7-92 (272)
481 PF00070 Pyr_redox: Pyridine n 93.3 0.14 3E-06 40.8 4.6 33 8-40 1-33 (80)
482 PRK04690 murD UDP-N-acetylmura 93.3 1.1 2.5E-05 48.3 12.9 111 7-126 9-142 (468)
483 PRK00517 prmA ribosomal protei 93.3 0.75 1.6E-05 45.2 10.7 112 7-130 121-235 (250)
484 PRK14181 bifunctional 5,10-met 93.3 0.31 6.8E-06 48.8 7.9 74 7-110 154-232 (287)
485 COG0190 FolD 5,10-methylene-te 93.3 0.26 5.6E-06 49.0 7.2 75 7-111 157-232 (283)
486 PLN02897 tetrahydrofolate dehy 93.3 0.28 6.2E-06 50.2 7.7 74 7-110 215-289 (345)
487 COG0499 SAM1 S-adenosylhomocys 93.2 0.29 6.4E-06 50.0 7.6 86 8-108 211-297 (420)
488 cd00755 YgdL_like Family of ac 93.2 0.45 9.7E-06 46.4 8.8 125 6-135 11-137 (231)
489 PRK06598 aspartate-semialdehyd 93.2 0.21 4.5E-06 52.0 6.8 93 7-110 2-101 (369)
490 PRK07453 protochlorophyllide o 93.2 0.49 1.1E-05 48.1 9.5 86 6-108 6-92 (322)
491 PRK05876 short chain dehydroge 93.2 0.48 1E-05 47.1 9.2 83 8-109 8-93 (275)
492 PRK07060 short chain dehydroge 93.2 0.49 1.1E-05 45.5 9.1 41 7-47 10-51 (245)
493 TIGR03466 HpnA hopanoid-associ 93.2 0.15 3.1E-06 51.6 5.6 70 7-81 1-73 (328)
494 PRK07494 2-octaprenyl-6-methox 93.2 0.11 2.5E-06 54.1 5.0 34 7-40 8-41 (388)
495 KOG1502 Flavonol reductase/cin 93.2 0.32 6.8E-06 49.6 7.8 73 5-80 5-86 (327)
496 COG0665 DadA Glycine/D-amino a 93.1 0.12 2.5E-06 53.8 4.9 36 5-40 3-38 (387)
497 PTZ00079 NADP-specific glutama 93.1 2.1 4.6E-05 45.7 14.1 117 7-130 238-374 (454)
498 COG1648 CysG Siroheme synthase 93.1 1.3 2.9E-05 42.4 11.6 77 7-91 13-90 (210)
499 PRK05786 fabG 3-ketoacyl-(acyl 93.1 1.5 3.3E-05 41.9 12.3 41 7-47 6-47 (238)
500 PRK06947 glucose-1-dehydrogena 93.1 0.52 1.1E-05 45.6 9.1 87 6-109 2-90 (248)
No 1
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.4e-139 Score=1027.25 Aligned_cols=468 Identities=58% Similarity=0.963 Sum_probs=453.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+.||+||+|+||++||+|++++||+|.+|||+++++++|.++....+ ++.++.|++|++++|++|+.|++||.++.+
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k--~i~~~~sieefV~~Le~PRkI~lMVkAG~~ 80 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGK--NIVPAYSIEEFVASLEKPRKILLMVKAGTP 80 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCC--CccccCcHHHHHHHhcCCceEEEEEecCCc
Confidence 467999999999999999999999999999999999999998765332 689999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHHHHHH
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKV 165 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ll~~i 165 (505)
||.++++|+|+|.+||||||.+|+++.+|.||.+.|.++|++|++++||||+++|+.||++|+||++++|+.++|+|++|
T Consensus 81 VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiMpGG~~eay~~v~pil~~I 160 (473)
T COG0362 81 VDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIMPGGQKEAYELVAPILTKI 160 (473)
T ss_pred HHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhcc
Q 010637 166 AAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFK 245 (505)
Q Consensus 166 ga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~ 245 (505)
+||.+++|||.|+|+.|+|||||||||+|||++||+|+|+|.+++...|++.+++.++|.+||+|.++|||++|+.+||+
T Consensus 161 aAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~IL~ 240 (473)
T COG0362 161 AAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADILR 240 (473)
T ss_pred HhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999997779999999999999999999999999999999
Q ss_pred ccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCccccccccccc
Q 010637 246 VKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHV 325 (505)
Q Consensus 246 ~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 325 (505)
.+|+.++.+++|.|+|.++|||||||+++.|+++|+|+|+|.+||++|++|+.|++|+++++.|++|.. ....
T Consensus 241 ~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~eaVfAR~lSs~K~eR~~Ask~l~~~~~-------~~~~ 313 (473)
T COG0362 241 KKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARYLSSLKDERVAASKVLAGPKL-------GEPG 313 (473)
T ss_pred hcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCC-------CCCC
Confidence 988777779999999999999999999999999999999999999999999999999999999988854 2256
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHH
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~ 405 (505)
|+..|+++|++|||+++|++|||||.+|++||++|+|+|++.+|++|||+||||||.||+.|.++|+++|++.|||++|+
T Consensus 314 dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~iWR~GCIIRs~FL~~I~~af~~~p~l~nLl~~py 393 (473)
T COG0362 314 DKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGGCIIRSKFLDKITDAFDENPELANLLLAPY 393 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccceehHHHHHHHHHHHhcCcchhhhhcCHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHHhhhcCccccccCCCCccccccCCC
Q 010637 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKL 482 (505)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~~~~~~~~a~~iqaqRd~FG~H~~~r~d~~~~~h~~w~~~ 482 (505)
|.+.+++.+++||++|..|++.|||+|++++||+|||+||++++|+|||||||||||||||||+|++|.||++|++.
T Consensus 394 F~~~~~~~~~~~R~vV~~a~~~giP~P~~ssalsy~Dsyr~~~lpaNLiQAQRDyFGAHtyeR~D~~~~fHt~W~~~ 470 (473)
T COG0362 394 FKSILEEYQQSLRRVVAYAVEAGIPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTNWTGG 470 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhhccccHHHHHHHHHhhcccceeecCCCCccccCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999864
No 2
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.9e-130 Score=949.27 Aligned_cols=484 Identities=61% Similarity=0.989 Sum_probs=460.4
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|+....++||+|||++||++|++|++++||.|++|||+.++++++.++.... ..+.+..|++|++..|++|++|++.|
T Consensus 1 m~q~~~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~--~~i~ga~S~ed~v~klk~PR~iillv 78 (487)
T KOG2653|consen 1 MSQTPKADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKG--TKIIGAYSLEDFVSKLKKPRVIILLV 78 (487)
T ss_pred CCCccccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcC--CcccCCCCHHHHHHhcCCCcEEEEEe
Confidence 4333346899999999999999999999999999999999999998765431 36888999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHH
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRD 160 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ 160 (505)
+++.+||..+++|.|+|.+||+|||.+|+.+.+|.|+.+.+.++|+.|++++||||+++|+.||++|+||++++|..+++
T Consensus 79 kAG~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSlMpGg~~~Awp~ik~ 158 (487)
T KOG2653|consen 79 KAGAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSLMPGGSKEAWPHIKD 158 (487)
T ss_pred eCCCcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCccCCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccc-CCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhh
Q 010637 161 ILQKVAAQV-DDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEI 239 (505)
Q Consensus 161 ll~~iga~~-~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~ 239 (505)
+|+.|++++ +++|||.|+|+.|+|||||||||+|||++||+|+|+|.++++.+|++.+++.++|.+||.+.+.|||++|
T Consensus 159 ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLieI 238 (487)
T KOG2653|consen 159 IFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEI 238 (487)
T ss_pred HHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHHH
Confidence 999999997 7899999999999999999999999999999999999999997779999999999999999999999999
Q ss_pred hhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCccccc
Q 010637 240 TADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQ 319 (505)
Q Consensus 240 ~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~ 319 (505)
+.+||+.+|+. +.++++.|+|.++|||||+|+++.|.++|+|+|+|.+||++||+|++|++|+.+++.|++|..+.
T Consensus 239 T~dIlk~~d~~-G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~eavfaRclS~lKdeR~~ask~L~gp~~~~--- 314 (487)
T KOG2653|consen 239 TADILKFKDED-GKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEAVFARCLSALKDERVRASKVLKGPGVKR--- 314 (487)
T ss_pred hHHHhheeccC-CChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCch---
Confidence 99999987654 44899999999999999999999999999999999999999999999999999999999886532
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCC
Q 010637 320 NVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLAS 399 (505)
Q Consensus 320 ~~~~~~~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ 399 (505)
....++..|++++++|+|+++|++|+|||.||++++++++|+||+.+|+++||+||||||.||+.|.++|+++|+|+|
T Consensus 315 --~~~~~k~~~~dd~r~alYaskiiSyaQGfmLlr~aa~e~gW~ln~~~iAlmWrgGCIIRsvfL~~I~~a~~~~p~l~n 392 (487)
T KOG2653|consen 315 --DMGDDKKQFLDDIRQALYASKIISYAQGFMLLREAAKEKGWKLNNGGIALMWRGGCIIRSVFLDRIKKAYQRNPDLAN 392 (487)
T ss_pred --hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHcCCeEeeHHHHHHHHHHHhcCccHhh
Confidence 223357889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHHhhhcCccccccCCCC-ccccc
Q 010637 400 LVVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPG-SFHTE 478 (505)
Q Consensus 400 ll~~~~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~~~~~~~~a~~iqaqRd~FG~H~~~r~d~~~-~~h~~ 478 (505)
||+|+.|.+++.+.+.+||++|..|+++|||+|++|+||+|||+||++++|+||+||||||||||||++++++| .+|++
T Consensus 393 ll~d~fF~~~v~~~q~~wr~vV~~a~~~gIptP~~st~Lafydgyr~e~lpaNllQAqRDYFGAHtye~l~~~~~~~Htn 472 (487)
T KOG2653|consen 393 LLLDPFFAKAVEEAQDSWRRVVALAVEAGIPTPAFSTALAFYDGYRSERLPANLLQAQRDYFGAHTYELLGEPGKAIHTN 472 (487)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhhhhcCcHHHHHHHHHhhccceeeecCCCcceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 79999
Q ss_pred cCCCCCCccchhhc
Q 010637 479 WTKLPARLVPVLMQ 492 (505)
Q Consensus 479 w~~~~~~~~~~~~~ 492 (505)
|++....++++.||
T Consensus 473 Wtg~gg~~s~~~y~ 486 (487)
T KOG2653|consen 473 WTGHGGNVSSSTYQ 486 (487)
T ss_pred ecccCCcccccccC
Confidence 99988889888887
No 3
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=100.00 E-value=6.6e-118 Score=940.36 Aligned_cols=469 Identities=60% Similarity=1.017 Sum_probs=440.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|++|||||+|.||.+||++|+++||+|++|||++++++++.+.....| ..+..+.+++++++.++++|+||+|||++.+
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g-~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~ 79 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGN-TRVKGYHTLEELVNSLKKPRKVILLIKAGEA 79 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcC-CcceecCCHHHHHhcCCCCCEEEEEeCChHH
Confidence 358999999999999999999999999999999999999987533211 1356789999999988789999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHHHHHH
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKV 165 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ll~~i 165 (505)
++++++++.+.+.+|++|||+||+.+.++.++.+.+.++|++|+++|||||+++|+.|+++|+||+++++++++|+|+.+
T Consensus 80 v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG~~~a~~~~~piL~~i 159 (470)
T PTZ00142 80 VDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGGNKEAYDHVKDILEKC 159 (470)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHH-HhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhc
Q 010637 166 AAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK-HVGGLSNAELAEIFDEWNKGELESFLVEITADIF 244 (505)
Q Consensus 166 ga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~-~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il 244 (505)
+++.+++||++|+|+.|+||++|||||+|+|++|++++|++.|++ +.| ++++++.++|+.|+.|.+.||+++++.+++
T Consensus 160 a~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~g-l~~~~l~~v~~~w~~g~~~S~l~ei~~~~~ 238 (470)
T PTZ00142 160 SAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILG-MSNEELSEVFNKWNEGILNSYLIEITAKIL 238 (470)
T ss_pred hhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 998778899999999999999999999999999999999999998 576 999999999999999999999999999999
Q ss_pred cccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccc
Q 010637 245 KVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVH 324 (505)
Q Consensus 245 ~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 324 (505)
.++|+.++.+.+|.|+|.++|||||+|++++|.++|||+|+|++||++|++|.+|++|..+++.|++|..... ...
T Consensus 239 ~~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a~~~R~~S~~k~~r~~~~~~~~gp~~~~~----~~~ 314 (470)
T PTZ00142 239 AKKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASVDARNISALKEERTKASSHLAGPNPANK----TET 314 (470)
T ss_pred hcccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHHHHHHHhhhhHHHHHHhccccCCCccccc----ccc
Confidence 9876533358999999999999999999999999999999999999999999999999999999987642000 112
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccH
Q 010637 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404 (505)
Q Consensus 325 ~~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~ 404 (505)
.+++||+||||||||||+|++|+|||+||++||++|+|++|+.+|++|||+||||||+||+.|.++|+++|++.|||+++
T Consensus 315 ~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~ 394 (470)
T PTZ00142 315 EDKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIARIWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDP 394 (470)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHhcCCChhhhcCCH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHHhhhcCccccccCCCCccccccC
Q 010637 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480 (505)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~~~~~~~~a~~iqaqRd~FG~H~~~r~d~~~~~h~~w~ 480 (505)
.|...+++..++|||+|..|++.|+|+|++++||+||++|+++++|+|||||||||||+|||+|+|++|.||++|+
T Consensus 395 ~~~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~y~~s~~~~~~~anliqaqRd~FGaH~~~r~d~~g~~h~~w~ 470 (470)
T PTZ00142 395 DFNDELKNKQPSWRKVVSMATKNGIPTPAFSASLAYYQMYRSQNLPANLVQAQRDYFGAHTYKRLDRPGAFHTNWE 470 (470)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHHHHHhCCCCcccCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999994
No 4
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=100.00 E-value=1.3e-116 Score=930.71 Aligned_cols=484 Identities=85% Similarity=1.308 Sum_probs=448.2
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|.++.+++|||||+|.||.+||+||+++||+|+||||++++++.+.+.....|...+..+.+++|+++.|++||+||+||
T Consensus 1 ~~~~~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v 80 (493)
T PLN02350 1 MASAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILV 80 (493)
T ss_pred CCCCCCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEEC
Confidence 66666789999999999999999999999999999999999999887421111002447889999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHH
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRD 160 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ 160 (505)
|++.++++|++++.+.+.+|++|||+||+.|.+++++.+.++++|++|+++|||||+++|+.|+++|+||+++++++++|
T Consensus 81 ~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG~~~a~~~v~p 160 (493)
T PLN02350 81 KAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKNIED 160 (493)
T ss_pred CCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHh-CCCCHHHHHHHHHHhccCCcchhHHhh
Q 010637 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHV-GGLSNAELAEIFDEWNKGELESFLVEI 239 (505)
Q Consensus 161 ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~-g~l~~~~i~~v~~~~~~g~~~s~l~~~ 239 (505)
+|+.++++.++++|++|+|+.|+||++||+||++++++|++++|++.++++. | ++++++.++|+.|+.|.+.||++++
T Consensus 161 vL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~G-ld~~~l~~vf~~~~~g~~~S~llei 239 (493)
T PLN02350 161 ILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGG-LSNEELAEVFAEWNKGELESFLIEI 239 (493)
T ss_pred HHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHcCCCccchHHHH
Confidence 9999998887888999999999999999999999999999999999999995 7 9999999999999999999999999
Q ss_pred hhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCccccc
Q 010637 240 TADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQ 319 (505)
Q Consensus 240 ~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~ 319 (505)
+.+++..+++|+++|.++.++||++|||||+|++++|.++|+|+|+|.++|++|+.|++|++|+.+++.|++|..+. .+
T Consensus 240 ~~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k~~r~~~~~~~~~~~~~~-~~ 318 (493)
T PLN02350 240 TADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLKEERVAAAKVFKEAGLED-IL 318 (493)
T ss_pred HHHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccHHHHHHHHhhcCCCCccc-cc
Confidence 99998876668878999999999999999999999999999999999999999999999999999999998652110 00
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCC
Q 010637 320 NVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLAS 399 (505)
Q Consensus 320 ~~~~~~~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ 399 (505)
......++..|+++|++|+|+++|++|+|||+||+++|++|+|++|+.+|++|||+||||||+||++|.++|+++|+++|
T Consensus 319 ~~~~~~~~~~~~~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~ 398 (493)
T PLN02350 319 SADSGVDKKQLIDDVRQALYASKICSYAQGMNLIRAKSVEKGWNLNLGELARIWKGGCIIRAVFLDRIKKAYDRNPDLAS 398 (493)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhh
Confidence 00012356789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHHhhhcCccccccCCCCcccccc
Q 010637 400 LVVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479 (505)
Q Consensus 400 ll~~~~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~~~~~~~~a~~iqaqRd~FG~H~~~r~d~~~~~h~~w 479 (505)
||+++.|.+.+.+..++|||+|..|++.|+|+|+|++||+||++++++++|+|+|||||||||+|||+|+|++|.||++|
T Consensus 399 l~~~~~~~~~~~~~~~~~r~~V~~a~~~gip~P~ls~aL~y~~s~~~~~~~~nliqaqRd~FGaH~~~r~d~~g~~h~~w 478 (493)
T PLN02350 399 LLVDPEFAKEMVERQAAWRRVVSLAINAGISTPGMSASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDRPGSFHTEW 478 (493)
T ss_pred hcCCHHHHHHHHHhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCCccHHHHHHHHHHhCCCceeeCCCCCCCcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCc
Q 010637 480 TKLPARL 486 (505)
Q Consensus 480 ~~~~~~~ 486 (505)
++.+...
T Consensus 479 ~~~~~~~ 485 (493)
T PLN02350 479 TKLARKS 485 (493)
T ss_pred hhhcCcc
Confidence 8654433
No 5
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=100.00 E-value=4.9e-116 Score=922.55 Aligned_cols=454 Identities=58% Similarity=0.970 Sum_probs=432.1
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChHHHHHHHHh-hcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchHHHHHHHHHh
Q 010637 17 MGQNLALNVAEKGFPISVYNRTTSKVDETLDR-AHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSE 95 (505)
Q Consensus 17 MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~-~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~ 95 (505)
||.+||+||+++||+|++|||++++++++.+. +... +++.+.|++++++++++||+||+|||++.++++|+++|++
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~---g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~ 77 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGK---KIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLP 77 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCC---CeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHh
Confidence 89999999999999999999999999999874 3211 3788999999999988899999999999999999999999
Q ss_pred cCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHHHHHHhccc-CCCCc
Q 010637 96 HMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQV-DDGPC 174 (505)
Q Consensus 96 ~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ll~~iga~~-~~~~~ 174 (505)
.+.+|++|||+||+.|.++.++.+.++++|++|+++|||||+++|+.|+++|+||+++++++++|+|+.+++++ ++++|
T Consensus 78 ~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~siM~GG~~~a~~~~~piL~~ia~~~~~g~~c 157 (459)
T PRK09287 78 LLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGPSIMPGGQKEAYELVAPILEKIAAKVEDGEPC 157 (459)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhhhhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 78899
Q ss_pred eEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHH-hCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCc
Q 010637 175 VTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKH-VGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEG 253 (505)
Q Consensus 175 v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~-~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~ 253 (505)
+.|+|+.|+||++|||||+|+|++|++++|++.|+++ .| ++++++.++|+.||.|.+.||+++++.+++..+|..++.
T Consensus 158 ~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~G-l~~~~l~~v~~~wn~g~~~S~l~ei~~~~l~~~d~~~~~ 236 (459)
T PRK09287 158 VTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLG-LSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGK 236 (459)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCCccChHHHhHhHHHhcCCCCCCC
Confidence 9999999999999999999999999999999999995 67 999999999999999999999999999999875522556
Q ss_pred hhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccccccchHHHH
Q 010637 254 ELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDD 333 (505)
Q Consensus 254 ~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 333 (505)
++||.|+|.++|||||+|++++|.++|||+|+|.+||++|+.|..+++|..+++.|.+|.. ....+++||+||
T Consensus 237 ~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~AvfaR~~S~~k~~r~~~~~~~~g~~~-------~~~~~~~~~i~~ 309 (459)
T PRK09287 237 PLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITEAVFARYLSSLKDQRVAASKVLSGPAA-------KFEGDKAEFIED 309 (459)
T ss_pred cchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHHHHHHHhccccHHHHHHhhcccCCCCC-------cccccHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999987643 212356899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHHHHHHHHhh
Q 010637 334 VRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQR 413 (505)
Q Consensus 334 v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~~~~~~~~~ 413 (505)
||||||||+|++|+|||+||+++|++|+|++|+.+|++|||+||||||+||+.|.++|+++|+++|||+++.|...+++.
T Consensus 310 v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~~~~i~~~ 389 (459)
T PRK09287 310 VRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRGGCIIRAQFLQKITDAYEANPDLANLLLDPYFKDILEEY 389 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCEEeHHHHHHHHHHHHhCCCchhhcCCHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHHhhhcCccccccCCCCccccccCC
Q 010637 414 QAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTK 481 (505)
Q Consensus 414 ~~~~r~~v~~a~~~gip~p~~saal~y~~~~~~~~~~a~~iqaqRd~FG~H~~~r~d~~~~~h~~w~~ 481 (505)
.++|||+|..|++.|+|+|+|++||+||+++|++++|+|||||||||||+|||+|+|++|.||++|++
T Consensus 390 ~~~~R~vV~~a~~~gip~P~ls~aL~y~d~~~~~~~~anliqaqRd~FGaH~~~r~d~~g~~h~~w~~ 457 (459)
T PRK09287 390 QDALRRVVALAVQAGIPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTEWSE 457 (459)
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHHHhHhCCCCcccCCCCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999974
No 6
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=100.00 E-value=7e-115 Score=917.70 Aligned_cols=463 Identities=59% Similarity=0.977 Sum_probs=437.3
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchHH
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVD 87 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~ 87 (505)
+|||||+|.||.+||++|+++||+|++|||++++++++.+.+... .++..+.+++++++.+++||+||+|||++.+++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g--~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~ 78 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKG--KKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVD 78 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCC--CCceecCCHHHHHhhcCCCCEEEEECCCcHHHH
Confidence 599999999999999999999999999999999999988752110 025678899999988888999999999999999
Q ss_pred HHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHHHHHHhc
Q 010637 88 QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAA 167 (505)
Q Consensus 88 ~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ll~~iga 167 (505)
++++++.+.+.+|++|||+||+.|.++.++.+.+.++|++|+++|||||+++|+.|+++|+||+++++++++|+|+.+++
T Consensus 79 ~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~~im~GG~~~a~~~~~p~L~~ia~ 158 (467)
T TIGR00873 79 AVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGPSIMPGGSAEAWPLVAPIFQKIAA 158 (467)
T ss_pred HHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHH-HhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccc
Q 010637 168 QVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK-HVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246 (505)
Q Consensus 168 ~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~-~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~ 246 (505)
++++++|++|+|+.|+||++|||||+|+|++|++++|++.|++ +.| ++++++.++|+.||.+.++||+++++.+++.+
T Consensus 159 ~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g-~~~~~l~~v~~~w~~~~~~S~l~~~~~~~~~~ 237 (467)
T TIGR00873 159 KVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLG-LSNEEIAEVFTEWNNGELDSYLIEITADILKK 237 (467)
T ss_pred hcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCcccchHHHhHHHHHhc
Confidence 8877899999999999999999999999999999999999997 577 99999999999999999999999999999998
Q ss_pred cccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccccc
Q 010637 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVD 326 (505)
Q Consensus 247 ~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 326 (505)
+|+ .+.+++|.|+|.++|||||+|++++|.++|||+|+|++++++|+.|..|++|..+++.|.+|... ....+
T Consensus 238 ~d~-~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~av~~R~~S~~k~~r~~~~~~~~gp~~~------~~~~~ 310 (467)
T TIGR00873 238 KDE-DGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESVFARYLSSLKEERVAASKVLSGPLAP------EPAVD 310 (467)
T ss_pred cCC-CCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHHHHHHhccccHHHHHHhhcccCCCCcc------ccccc
Confidence 765 44589999999999999999999999999999999999999999999999999999999876421 12235
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHHH
Q 010637 327 KKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEF 406 (505)
Q Consensus 327 ~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~~ 406 (505)
++||+||||||||||+|++|+|||+||++||++|+|++|+++|++|||+||||||+||++|.++|+++|++.|||+++.|
T Consensus 311 ~~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~~~ 390 (467)
T TIGR00873 311 KEEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIWRGGCIIRSGFLDKITKAFAENPDLANLLLAPYF 390 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhhhcCCHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHHhhhcCccccccCCCC--ccccccC
Q 010637 407 AREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPG--SFHTEWT 480 (505)
Q Consensus 407 ~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~~~~~~~~a~~iqaqRd~FG~H~~~r~d~~~--~~h~~w~ 480 (505)
...+++..++|||+|..|++.|+|+|+||+||+||++||++++|+|||||||||||+|||+|+|++| .||++|+
T Consensus 391 ~~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~~~~~nliqaqRd~FGaH~~~r~d~~g~~~~h~~w~ 466 (467)
T TIGR00873 391 KDALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRTARLPANLLQAQRDYFGAHTYERTDKPRGEFFHTNWT 466 (467)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCcccHHHHHHHHHHhccccccccCCCCCCccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 9999996
No 7
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=100.00 E-value=1.2e-89 Score=671.38 Aligned_cols=291 Identities=62% Similarity=1.029 Sum_probs=248.8
Q ss_pred hhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhh
Q 010637 184 GNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKT 263 (505)
Q Consensus 184 g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~ 263 (505)
|||||||||||||++||+++|+|.++++..|++++++.++|+.||.|.++|||++++.++++++| .++.+++|.|+|.+
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~il~~~d-~~g~~lld~I~d~a 79 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADILRKKD-ETGGPLLDKILDKA 79 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHHHT-B--TTSSBGGGGB-S--
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHHHhhcc-CccCcchhhhCCcc
Confidence 89999999999999999999999999976669999999999999999999999999999999876 56779999999999
Q ss_pred CCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccccccchHHHHHHHHHHHHHH
Q 010637 264 GMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKI 343 (505)
Q Consensus 264 ~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~al~~~~~ 343 (505)
+|||||+|++++|.++|||+|+|++||++|++|+.|++|..+++.+++|.... ....+...|+++|++|+|+++|
T Consensus 80 ~~kGtG~Wt~~~a~~~gvp~p~I~~a~~aR~~S~~k~~R~~~s~~~~~~~~~~-----~~~~~~~~~i~~l~~Aly~~~i 154 (291)
T PF00393_consen 80 GQKGTGKWTVQEALELGVPAPTIAAAVFARFLSAQKEERVAASKILPGPQKFD-----ESKEDKEEFIEDLRKALYAAKI 154 (291)
T ss_dssp --BSHHHHHHHHHHHHT---HHHHHHHHHHHHHHTHHHHHHHHHHSTT-S-ST-----TS-SSHHHHHHHHHHHHHHHHH
T ss_pred CCCCccchHHHHHHHhCCCccHHHHHHHHHHHhcCCcHHHHHHhhcccccccc-----cccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998864110 2345678899999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHHHHHHHHhhhhHHHHHHHH
Q 010637 344 CSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGL 423 (505)
Q Consensus 344 ~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~r~~v~~ 423 (505)
++|+|||+||+++|++|+|++|+++|++|||+||||||.||++|.++|+++|++.|||+++.|.+.+++..++|||+|..
T Consensus 155 ~~yaQGf~ll~~as~~~~W~lnl~~ia~IWr~GCIIRs~lL~~i~~af~~~p~l~nLll~~~f~~~l~~~~~~lR~vV~~ 234 (291)
T PF00393_consen 155 ISYAQGFALLRAASKEYGWDLNLSEIARIWRGGCIIRSWLLDDIAEAFKENPDLENLLLDPYFAEELKDNQPSLRRVVSL 234 (291)
T ss_dssp HHHHHHHHHHHHHHHHHT----HHHHHHHTSSSSTT-BTHHHHHHHHHHH-TT-STGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcCcHHHHHHHHhccchHHHHHHHHHHHHHHhCCChhccccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHHhhhcCccccccCCCCccccccC
Q 010637 424 AISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480 (505)
Q Consensus 424 a~~~gip~p~~saal~y~~~~~~~~~~a~~iqaqRd~FG~H~~~r~d~~~~~h~~w~ 480 (505)
|++.|+|+|++++||+||+++|++++|+|||||||||||+|||||+|++|.||++|+
T Consensus 235 ai~~gipvPalsaaL~Y~ds~~~~~lpanlIQAqRDyFGaHtyeR~D~~g~fH~~W~ 291 (291)
T PF00393_consen 235 AIEAGIPVPALSAALSYFDSYRSERLPANLIQAQRDYFGAHTYERIDKEGSFHTEWS 291 (291)
T ss_dssp HHHHT---HHHHHHHHHHHHHTTSSHTHHHHHHHHHHHH---EEBSSSSSEE---TT
T ss_pred HHHcCCChHHHHHHHHHHHhcccCCCcHHHHHHHHHHhcCcceeecCCCCCcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999995
No 8
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-60 Score=442.44 Aligned_cols=298 Identities=28% Similarity=0.507 Sum_probs=269.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+||+||||.||.+|+++|.++||+|.+||+|++.++++.+.+ ++.++|++++++.|..|++|.+|||++..+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~g-------a~~a~sl~el~~~L~~pr~vWlMvPag~it 73 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEG-------ATGAASLDELVAKLSAPRIVWLMVPAGDIT 73 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcC-------CccccCHHHHHHhcCCCcEEEEEccCCCch
Confidence 5899999999999999999999999999999999999998875 467899999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHHHHHHh
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVA 166 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ll~~ig 166 (505)
++++++|.+.|++||+|||.+|+++.++.++.+.++++|+||+|++.|||..+++.|.++|+||++++++++.|+|+.++
T Consensus 74 ~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG~~~a~~~~~pif~~lA 153 (300)
T COG1023 74 DAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKALA 153 (300)
T ss_pred HHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecCcHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccc
Q 010637 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246 (505)
Q Consensus 167 a~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~ 246 (505)
+. .
T Consensus 154 ------~g-----------------------------------------------------------------------e 156 (300)
T COG1023 154 ------PG-----------------------------------------------------------------------E 156 (300)
T ss_pred ------cC-----------------------------------------------------------------------c
Confidence 22 0
Q ss_pred cccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccccc
Q 010637 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVD 326 (505)
Q Consensus 247 ~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 326 (505)
+.| .+.+|. +
T Consensus 157 -~Gy---------------------------------------------------------l~~Gp~------------G 166 (300)
T COG1023 157 -DGY---------------------------------------------------------LYCGPS------------G 166 (300)
T ss_pred -Ccc---------------------------------------------------------ccccCC------------C
Confidence 000 011332 3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHHH
Q 010637 327 KKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEF 406 (505)
Q Consensus 327 ~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~~ 406 (505)
+|||+|||||+|||++|++|+|||+||+++ .+++|+++|+++||.|++||||||+.+.++|+++|+|+.+- ..+
T Consensus 167 sGHfvKMVHNGIEYGmM~a~aEGfelL~~s----~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~q~~--g~v 240 (300)
T COG1023 167 SGHFVKMVHNGIEYGMMQAIAEGFELLKNS----PFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQIS--GRV 240 (300)
T ss_pred cchhHHHHhccHHHHHHHHHHHHHHHHHhC----CCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhCCCHHHhc--Cee
Confidence 799999999999999999999999999964 48899999999999999999999999999999998764322 123
Q ss_pred HHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH-HHHhhccCChhhhHHHHHHhhhcCcccccc
Q 010637 407 AREMVQRQAAWRRVVGLAISAGISTPGMCASLS-YFDTYRRARLPANLVQAQRDLFGAHTYERI 469 (505)
Q Consensus 407 ~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~-y~~~~~~~~~~a~~iqaqRd~FG~H~~~r~ 469 (505)
. .++++ ||+|++|++.|+|+|+|+.||+ .|.|.+......+++.|+|..||.|..+++
T Consensus 241 ~---dSGEG--rWTv~~aldlgvpaPVia~al~~Rf~S~~~d~f~~kvlaalR~~FGgH~vk~k 299 (300)
T COG1023 241 S---DSGEG--RWTVEEALDLGVPAPVIALALMMRFRSRQDDTFAGKVLAALRNEFGGHAVKKK 299 (300)
T ss_pred c---cCCCc--eeehHHHHhcCCCchHHHHHHHHHHhccchhhHHHHHHHHHHHHhCCcccccC
Confidence 3 37889 9999999999999999999999 688888888889999999999999998765
No 9
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=100.00 E-value=5.7e-56 Score=447.77 Aligned_cols=295 Identities=28% Similarity=0.499 Sum_probs=257.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|||||+|.||.+||.+|+++||+|.+|||++++++.+.+.+ ...+.+++++++.+..+|+||+|||++ .+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g-------~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~ 72 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDR-------TTGVANLRELSQRLSAPRVVWVMVPHG-IV 72 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC-------CcccCCHHHHHhhcCCCCEEEEEcCch-HH
Confidence 4899999999999999999999999999999999999988753 345678888888777799999999998 99
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHHHHHHh
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVA 166 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ll~~ig 166 (505)
+++++++.+.+.+|++|||+||+.|.++.++.+.+.++|++|+++||+||+.+++.|+++|+||+++++++++|+|+.++
T Consensus 73 ~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG~~~~~~~~~~~l~~~~ 152 (298)
T TIGR00872 73 DAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGGDGEAFARAEPLFADVA 152 (298)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccc
Q 010637 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246 (505)
Q Consensus 167 a~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~ 246 (505)
.+. +.++|+|+.|
T Consensus 153 ~~~---~~~~~~G~~G---------------------------------------------------------------- 165 (298)
T TIGR00872 153 PEE---QGYLYCGPCG---------------------------------------------------------------- 165 (298)
T ss_pred CcC---CCEEEECCcc----------------------------------------------------------------
Confidence 110 0122222222
Q ss_pred cccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccccc
Q 010637 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVD 326 (505)
Q Consensus 247 ~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 326 (505)
T Consensus 166 -------------------------------------------------------------------------------- 165 (298)
T TIGR00872 166 -------------------------------------------------------------------------------- 165 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHHH
Q 010637 327 KKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEF 406 (505)
Q Consensus 327 ~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~~ 406 (505)
.++++|++||++++++|++|+|||.|++++ +|++|+++++++|++||+|||++|+.+.++|++++.+++ |
T Consensus 166 ~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~----g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~------~ 235 (298)
T TIGR00872 166 SGHFVKMVHNGIEYGMMAAIAEGFEILRNS----QFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAE------F 235 (298)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHH------H
Confidence 234667788888888888888888888764 799999999999999999999999999999998875433 5
Q ss_pred HHHH-HhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccC-ChhhhHHHHHHhhhcCccccc
Q 010637 407 AREM-VQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRA-RLPANLVQAQRDLFGAHTYER 468 (505)
Q Consensus 407 ~~~~-~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~~~~~-~~~a~~iqaqRd~FG~H~~~r 468 (505)
...+ +++++ ||+|.+|++.|+|+|++++||.|++.+++. ++|+|+|||||||||+|+|++
T Consensus 236 ~~~~~~~~~~--r~~v~~a~~~g~p~P~~~~al~~~~~~~~~~~~~~~~~~~~r~~fg~h~~~~ 297 (298)
T TIGR00872 236 SGRVSDSGEG--RWTVIAAIDLGVPAPVIATSLQSRFASRDLDDFANKVLAALRKEFGGHAEKK 297 (298)
T ss_pred HHHHHhhccH--HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhhCCCCcCC
Confidence 5543 45555 999999999999999999999999999988 999999999999999999987
No 10
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=1.1e-47 Score=388.16 Aligned_cols=299 Identities=30% Similarity=0.524 Sum_probs=254.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|||||+|.||.+||++|+++|++|.+|||++++++++.+.+ +..+.+++++++.+..+|+||+++|++..+
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g-------~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~ 73 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEG-------ATGADSLEELVAKLPAPRVVWLMVPAGEIT 73 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCC-------CeecCCHHHHHhhcCCCCEEEEEecCCcHH
Confidence 4899999999999999999999999999999999998886643 567889999988654579999999998789
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHHHHHHh
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVA 166 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ll~~ig 166 (505)
+++++++.+.+.+|++|||+||+.|..++++.+.++++|++|+|+||+||+.+++.|.++|+||+++++++++|+|+.++
T Consensus 74 ~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~ 153 (301)
T PRK09599 74 DATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGYCLMIGGDKEAVERLEPIFKALA 153 (301)
T ss_pred HHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCCeEEecCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccc
Q 010637 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246 (505)
Q Consensus 167 a~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~ 246 (505)
.+.+ .+++|+|+.|+|+.+
T Consensus 154 ~~~~--~~~~~~G~~G~g~~~----------------------------------------------------------- 172 (301)
T PRK09599 154 PRAE--DGYLHAGPVGAGHFV----------------------------------------------------------- 172 (301)
T ss_pred cccc--CCeEeECCCcHHHHH-----------------------------------------------------------
Confidence 2100 057777665543333
Q ss_pred cccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccccc
Q 010637 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVD 326 (505)
Q Consensus 247 ~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 326 (505)
T Consensus 173 -------------------------------------------------------------------------------- 172 (301)
T PRK09599 173 -------------------------------------------------------------------------------- 172 (301)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHHH
Q 010637 327 KKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEF 406 (505)
Q Consensus 327 ~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~~ 406 (505)
|+++|+++++.|++|+|+|.|+++ ++|++|+++++++|+.||+++|++|+.+..++.++|..+ .+
T Consensus 173 -----Kl~~n~l~~~~~~~~aEa~~l~~~----~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~------~~ 237 (301)
T PRK09599 173 -----KMVHNGIEYGMMQAYAEGFELLEA----SRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDPKLD------EI 237 (301)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHH----cCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcCCCHH------HH
Confidence 555556666666677777777765 578899999999999999999999999999997764321 12
Q ss_pred HHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHH-HHhhccCChhhhHHHHHHhhhcCcccccc
Q 010637 407 AREMVQRQAAWRRVVGLAISAGISTPGMCASLSY-FDTYRRARLPANLVQAQRDLFGAHTYERI 469 (505)
Q Consensus 407 ~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y-~~~~~~~~~~a~~iqaqRd~FG~H~~~r~ 469 (505)
...++. ...+||++..|.+.|+|+|++++++.| |.++....+|.+++||||||||+|+|+|.
T Consensus 238 ~~~~kd-~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~fg~h~~~~~ 300 (301)
T PRK09599 238 SGYVED-SGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGFGGHAVKKK 300 (301)
T ss_pred HHHHHh-hCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcCCCCccCC
Confidence 222323 334499999999999999999999998 99999999999999999999999999995
No 11
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=2.3e-46 Score=368.44 Aligned_cols=256 Identities=26% Similarity=0.412 Sum_probs=239.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHH-HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+||||||+|.||.+||.||.++||+|++|||++++ .+.+.+.+ ...+.++.|++.. +|+||+|||++.+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~G-------a~~a~s~~eaa~~---aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAG-------ATVAASPAEAAAE---ADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcC-------CcccCCHHHHHHh---CCEEEEecCCHHH
Confidence 48999999999999999999999999999999999 44444433 5678899999998 9999999999999
Q ss_pred HHHHH---HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHHH
Q 010637 86 VDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDI 161 (505)
Q Consensus 86 v~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~l 161 (505)
+++|+ +++.+.+++|.++||+||+.|..++++.+.++++|++|+|+|||||+.++..|+ ++|+||+++++++++|+
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pv 150 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPV 150 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHH
Confidence 99999 578889999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhh
Q 010637 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITA 241 (505)
Q Consensus 162 l~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~ 241 (505)
|+.+| ++++|+|+.|+|+.+|++||.+..+.+++++|++.++++.| +|++.+.+++ ..+..+||.++.+.
T Consensus 151 l~~~g------~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~G-ld~~~~~~vi---~~~~~~s~~~e~~~ 220 (286)
T COG2084 151 LEAMG------KNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAG-LDPDVVLEVI---SGGAAGSWILENYG 220 (286)
T ss_pred HHHhc------CceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hccccCChHHHhhc
Confidence 99999 89999999999999999999999999999999999999999 9999999998 56788999999988
Q ss_pred hhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHH
Q 010637 242 DIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (505)
Q Consensus 242 ~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~a 289 (505)
+.+.. ++|+|+|.++.+.||++ ++.++|+++|+|+|+.+.+
T Consensus 221 ~~m~~-~~~~p~F~v~~~~KDl~------la~~~A~~~g~~lP~~~~~ 261 (286)
T COG2084 221 PRMLE-GDFSPGFAVDLMLKDLG------LALDAAKELGAPLPLTALA 261 (286)
T ss_pred chhhc-CCCCcchhHHHHHHHHH------HHHHHHHhcCCCCcHHHHH
Confidence 76665 45999999999999997 9999999999999998865
No 12
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=6.1e-45 Score=367.75 Aligned_cols=207 Identities=34% Similarity=0.605 Sum_probs=184.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|||||+|.||.+||.+|+++|++|.+|||++++++.+.+.+ ...+.+++++++..+.+|+||+|+|++..+
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g-------~~~~~s~~~~~~~~~~advVi~~vp~~~~~ 73 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLG-------ITARHSLEELVSKLEAPRTIWVMVPAGEVT 73 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCC-------CeecCCHHHHHHhCCCCCEEEEEecCchHH
Confidence 4799999999999999999999999999999999988886543 567889999987644469999999998889
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHHHHHHh
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVA 166 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ll~~ig 166 (505)
+++++++.+.+.+|++|||+||+.|.+++++.+.+.++|++|+++||+|++.++..|.++|+||+++++++++|+|+.++
T Consensus 74 ~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~ 153 (299)
T PRK12490 74 ESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGGDKEIYDRLEPVFKALA 153 (299)
T ss_pred HHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhC-CCCHHHHHHH
Q 010637 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVG-GLSNAELAEI 223 (505)
Q Consensus 167 a~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g-~l~~~~i~~v 223 (505)
.+. ++++|+|+.|+|+++|+++|.+.++.+++++|++.++++.| ++|++++.++
T Consensus 154 ~~~---~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~ 208 (299)
T PRK12490 154 PEG---PGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARL 208 (299)
T ss_pred CcC---CcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHH
Confidence 310 27999999999999999999999999999999988888764 3555555554
No 13
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=100.00 E-value=1.5e-42 Score=334.64 Aligned_cols=263 Identities=23% Similarity=0.350 Sum_probs=243.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++||+||+|.||.+|+.||.++||+|+||||+.+++++|.+.| .+++++|.|+++. +|+||.|||+..+
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~G-------a~v~~sPaeVae~---sDvvitmv~~~~~ 104 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAG-------ARVANSPAEVAED---SDVVITMVPNPKD 104 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhc-------hhhhCCHHHHHhh---cCEEEEEcCChHh
Confidence 46899999999999999999999999999999999999999876 4678999999998 9999999999999
Q ss_pred HHHHH---HHHHhcCCCCcEE-EecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHH
Q 010637 86 VDQTI---AALSEHMSPGDCI-IDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRD 160 (505)
Q Consensus 86 v~~vl---~~l~~~l~~g~iI-Id~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~ 160 (505)
+++++ .+++..+++|... ||.||+.|..++++.+.+..++..|+|+|||||..+|+.|+ +||+|||++.++++.|
T Consensus 105 v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~ 184 (327)
T KOG0409|consen 105 VKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASP 184 (327)
T ss_pred hHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHH
Confidence 99999 4566667788877 99999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhh
Q 010637 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240 (505)
Q Consensus 161 ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~ 240 (505)
+|+.+| ++++|+|..|.|..+|+++|.+....|..++|++.|+.+.| +|+..+.+++ |.|...|+.+...
T Consensus 185 ~~~~mG------k~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~G-Ld~~~l~eil---n~G~~~S~~~~~~ 254 (327)
T KOG0409|consen 185 VFKLMG------KNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLG-LDAKKLLEIL---NTGRCWSSMFYNP 254 (327)
T ss_pred HHHHhc------ceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCcccHHHhCc
Confidence 999999 99999999999999999999999999999999999999999 9999999998 6688899999888
Q ss_pred hhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHh
Q 010637 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (505)
Q Consensus 241 ~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s 296 (505)
.+.+.+ ++|.|+|.++++.||++ ++..+|.+.++|+|+.+.| .+.|.+
T Consensus 255 ~p~m~k-~dy~p~f~~~~m~KDLg------la~~~a~~~~~~~P~~slA-~qly~~ 302 (327)
T KOG0409|consen 255 VPGMLK-GDYNPGFALKLMVKDLG------LALNAAESVKVPMPLGSLA-HQLYKS 302 (327)
T ss_pred Cchhhc-CCCCCcchHHHHHHHHH------HHHHhhhccCCCCchHHHH-HHHHHH
Confidence 876665 45999999999999997 9999999999999999876 344443
No 14
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=2.9e-40 Score=331.99 Aligned_cols=262 Identities=22% Similarity=0.329 Sum_probs=235.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|||||+|.||.+||.+|.++||+|.+|||++. .+.+.+. ++..+.++.++++. +|+||+|||++.++
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~-------g~~~~~s~~~~~~~---advVi~~v~~~~~v 69 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSL-------GAVSVETARQVTEA---SDIIFIMVPDTPQV 69 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHc-------CCeecCCHHHHHhc---CCEEEEeCCChHHH
Confidence 4799999999999999999999999999999975 5666543 24567899998887 99999999999889
Q ss_pred HHHHH---HHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHHHH
Q 010637 87 DQTIA---ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (505)
Q Consensus 87 ~~vl~---~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~ll 162 (505)
++++. ++.+.+.+|++|||+||..|.+++++.+.+.++|+.|+++||+|++.+++.|+ .+|+||+++++++++|+|
T Consensus 70 ~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l 149 (292)
T PRK15059 70 EEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLF 149 (292)
T ss_pred HHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHH
Confidence 99883 46777889999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhh
Q 010637 163 QKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD 242 (505)
Q Consensus 163 ~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~ 242 (505)
+.++ ++++|+|+.|+|+.+|+++|.+....+++++|++.++++.| +|++++.+++ +.+.+.|++++...+
T Consensus 150 ~~~g------~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~G-ld~~~~~~~l---~~~~~~s~~~~~~~~ 219 (292)
T PRK15059 150 ELLG------KNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAG-ADPVRVRQAL---MGGFASSRILEVHGE 219 (292)
T ss_pred HHHc------CCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HcCcccCHHHHhhch
Confidence 9999 78999999999999999999999999999999999999999 9999999998 567788999988877
Q ss_pred hccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 010637 243 IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (505)
Q Consensus 243 il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~ 297 (505)
.+.. ++|+++|.++.+.||+. ++++.|++.|+|+|+... +...|..+
T Consensus 220 ~~~~-~~~~~~f~l~~~~KDl~------l~~~~a~~~g~~~p~~~~-~~~~~~~a 266 (292)
T PRK15059 220 RMIK-RTFNPGFKIALHQKDLN------LALQSAKALALNLPNTAT-CQELFNTC 266 (292)
T ss_pred hhhc-CCCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHHH-HHHHHHHH
Confidence 6654 56889999999999996 999999999999998875 34555443
No 15
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=100.00 E-value=3.7e-39 Score=325.04 Aligned_cols=264 Identities=22% Similarity=0.275 Sum_probs=233.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||.+||.+|+++||+|.+|||++++.+++.+.+ +..+.++.++++. +|+||+|+|+...+
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g-------~~~~~s~~~~~~~---aDvVi~~vp~~~~~ 71 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKG-------ATPAASPAQAAAG---AEFVITMLPNGDLV 71 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcC-------CcccCCHHHHHhc---CCEEEEecCCHHHH
Confidence 5899999999999999999999999999999999999887653 4567788888887 99999999998778
Q ss_pred HHHH---HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHHHH
Q 010637 87 DQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (505)
Q Consensus 87 ~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~ll 162 (505)
+.++ +++.+.+++|.+|||+||..|..++++.+.+.++|+.|+++||+|++..+..|+ ++|+||+++++++++|+|
T Consensus 72 ~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l 151 (296)
T PRK15461 72 RSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPIL 151 (296)
T ss_pred HHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHH
Confidence 8887 357777889999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhh-
Q 010637 163 QKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITA- 241 (505)
Q Consensus 163 ~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~- 241 (505)
+.++ +.++|+|+.|+|+.+|+++|.+....+++++|++.++++.| +|++.+.+++. .+...++.+....
T Consensus 152 ~~~g------~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-ld~~~~~~~l~---~~~~~~~~~~~~~~ 221 (296)
T PRK15461 152 MAMG------NELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALG-LSFDVALKVMS---GTAAGKGHFTTTWP 221 (296)
T ss_pred HHHc------CCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHh---cCcccChHHHcccc
Confidence 9999 78999999999999999999999999999999999999999 99999999984 4444455544443
Q ss_pred hhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcc
Q 010637 242 DIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGL 298 (505)
Q Consensus 242 ~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~ 298 (505)
+.+.. ++|+++|.++.+.||++ ++.+.|.+.|+|+|+...+ ..+|..+.
T Consensus 222 ~~~~~-~~~~~~f~~~~~~KD~~------l~~~~a~~~g~~~p~~~~~-~~~~~~a~ 270 (296)
T PRK15461 222 NKVLK-GDLSPAFMIDLAHKDLG------IALDVANQLHVPMPLGAAS-REVYSQAR 270 (296)
T ss_pred chhcc-CCCCCCcchHHHHhhHH------HHHHHHHHcCCCChHHHHH-HHHHHHHH
Confidence 24433 56899999999999996 9999999999999988754 56665543
No 16
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=100.00 E-value=4.9e-38 Score=315.90 Aligned_cols=260 Identities=22% Similarity=0.288 Sum_probs=232.7
Q ss_pred EEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchHHHHH
Q 010637 11 LAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTI 90 (505)
Q Consensus 11 IIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~vl 90 (505)
|||+|.||.+||.+|+++||+|.+|||++++++.+.+.+ +..+.++.++++. +|+||+|||++.+++.++
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g-------~~~~~s~~~~~~~---advVil~vp~~~~~~~v~ 70 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAG-------AQAAASPAEAAEG---ADRVITMLPAGQHVISVY 70 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEeCCChHHHHHHH
Confidence 689999999999999999999999999999998887653 4567899998887 999999999987889998
Q ss_pred ---HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHHHHHHHh
Q 010637 91 ---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVA 166 (505)
Q Consensus 91 ---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~ll~~ig 166 (505)
+++.+.+.+|++|||+||..|..++++.+.+.++|++|+++||+||+.++..|+ .+|+||+++.+++++|+|+.++
T Consensus 71 ~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g 150 (288)
T TIGR01692 71 SGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMG 150 (288)
T ss_pred cCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhc
Confidence 788888999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred cccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhh---
Q 010637 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI--- 243 (505)
Q Consensus 167 a~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~i--- 243 (505)
++++|+|+.|+|+.+|+++|.+.++.+++++|++.++++.| +|++++.+++ +.+.+.|+..+...+.
T Consensus 151 ------~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G-ld~~~~~~~~---~~~~~~s~~~~~~~~~~~~ 220 (288)
T TIGR01692 151 ------RNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLG-LDPKVLFEIA---NTSSGRCWSSDTYNPVPGV 220 (288)
T ss_pred ------CCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCccCcHHHHhCCCccc
Confidence 78999999999999999999999999999999999999999 9999999998 5667778777655431
Q ss_pred ---ccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 010637 244 ---FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (505)
Q Consensus 244 ---l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~ 297 (505)
....++|+++|.++.+.||++ ++.+.|.+.|+|+|+...+ ...|..+
T Consensus 221 ~~~~~~~~~~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~a 270 (288)
T TIGR01692 221 MPQAPASNGYQGGFGTALMLKDLG------LAQDAAKSAGAPTPLGALA-RQLYSLF 270 (288)
T ss_pred cccccccCCCCCCcchHHHHhhHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 112256889999999999996 9999999999999988754 5555544
No 17
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=4.9e-37 Score=359.28 Aligned_cols=262 Identities=17% Similarity=0.282 Sum_probs=241.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|||||+|.||.+||.||+++||+|.+|||++++++.+.+.+ ...++|+.|+++. +|+||+|||++.++
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~G-------a~~~~s~~e~a~~---advVi~~l~~~~~v 74 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELG-------GHRCDSPAEAAKD---AAALVVVLSHPDQV 74 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEEcCChHHH
Confidence 5799999999999999999999999999999999999998764 4678999999988 99999999999999
Q ss_pred HHHH---HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCC--CeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHH
Q 010637 87 DQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKG--LLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRD 160 (505)
Q Consensus 87 ~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~g--i~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~ 160 (505)
++|+ +++.+.+.+|++|||+||..|..++++.+.+.++| +.|+++||+||+.+|..|. ++|+||+++++++++|
T Consensus 75 ~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p 154 (1378)
T PLN02858 75 DDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQP 154 (1378)
T ss_pred HHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHH
Confidence 9998 57888889999999999999999999999999999 9999999999999999999 9999999999999999
Q ss_pred HHHHHhcccCCCCceEEe-CCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhh
Q 010637 161 ILQKVAAQVDDGPCVTYI-GEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEI 239 (505)
Q Consensus 161 ll~~iga~~~~~~~v~~v-G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~ 239 (505)
+|+.+| +.++++ |+.|+|+.+|+++|.+.++.+++++|++.++++.| ++++.+.+++ +.+.+.|+.++.
T Consensus 155 ~l~~~g------~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~G-ld~~~l~~vl---~~s~g~s~~~~~ 224 (1378)
T PLN02858 155 FLSAMC------QKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAG-IHPWIIYDII---SNAAGSSWIFKN 224 (1378)
T ss_pred HHHHhc------CceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCccCHHHHh
Confidence 999999 778764 99999999999999999999999999999999999 9999999998 567888999888
Q ss_pred hhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHh
Q 010637 240 TADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (505)
Q Consensus 240 ~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s 296 (505)
..+.+.. ++|.++|.++.+.||++ ++++.|.++|+|+|+...+ ..+|..
T Consensus 225 ~~~~~~~-~d~~~~F~l~l~~KDl~------la~~~A~~~g~~lpl~~~a-~~~~~~ 273 (1378)
T PLN02858 225 HVPLLLK-DDYIEGRFLNVLVQNLG------IVLDMAKSLPFPLPLLAVA-HQQLIS 273 (1378)
T ss_pred hhhHhhc-CCCCCCchhHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 8776654 56899999999999997 9999999999999988764 555544
No 18
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=1.8e-36 Score=305.84 Aligned_cols=264 Identities=21% Similarity=0.310 Sum_probs=236.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+|+|||||+|.||..+|.+|+++|++|.+|||++++.+.+.+.+ +..+++++++++. +|+||+|+|+...
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g-------~~~~~~~~e~~~~---~d~vi~~vp~~~~ 71 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAG-------AETASTAKAVAEQ---CDVIITMLPNSPH 71 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CeecCCHHHHHhc---CCEEEEeCCCHHH
Confidence 56899999999999999999999999999999999988876543 4567889998877 9999999999888
Q ss_pred HHHHH---HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHHH
Q 010637 86 VDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDI 161 (505)
Q Consensus 86 v~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~l 161 (505)
++.++ +++.+.+.+|++|||+||..|..++++.+.+.++|++|+++||+|++..+..|. .+|+||+++++++++++
T Consensus 72 ~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~ 151 (296)
T PRK11559 72 VKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDL 151 (296)
T ss_pred HHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHH
Confidence 88887 567888899999999999999999999999999999999999999999999998 89999999999999999
Q ss_pred HHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhh
Q 010637 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITA 241 (505)
Q Consensus 162 l~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~ 241 (505)
|+.++ .+++++|+.|+|+.+|+++|.+.++.+++++|++.++++.| ++++++.+++ ..+.+.|++++...
T Consensus 152 l~~~~------~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-i~~~~~~~~l---~~~~~~s~~~~~~~ 221 (296)
T PRK11559 152 MKAMA------GSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAG-VNPDLVYQAI---RGGLAGSTVLDAKA 221 (296)
T ss_pred HHHhc------CCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCcccCHHHHhhc
Confidence 99999 78999999999999999999999999999999999999998 9999999887 56777888888776
Q ss_pred hhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 010637 242 DIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (505)
Q Consensus 242 ~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~ 297 (505)
+.+.. ++|.++|.++...||++ .+++.|++.|+|+|+...+ ..+|..+
T Consensus 222 ~~~~~-~d~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~~ 269 (296)
T PRK11559 222 PMVMD-RNFKPGFRIDLHIKDLA------NALDTSHGVGAPLPLTAAV-MEMMQAL 269 (296)
T ss_pred hHhhc-CCCCCCcchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 65544 46888999999999986 8999999999999998864 5665544
No 19
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=100.00 E-value=3.7e-36 Score=302.74 Aligned_cols=262 Identities=21% Similarity=0.354 Sum_probs=235.4
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchHH
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVD 87 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~ 87 (505)
+|||||+|.||.+||.+|+++||+|++|||++++.+.+.+.+ ...+.++.+++++ +|+||+|+|+...++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~~---aDivi~~vp~~~~~~ 70 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAG-------AVTAETARQVTEQ---ADVIFTMVPDSPQVE 70 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CcccCCHHHHHhc---CCEEEEecCCHHHHH
Confidence 599999999999999999999999999999999998887653 3456788888887 999999999987888
Q ss_pred HHH---HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHHHHH
Q 010637 88 QTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQ 163 (505)
Q Consensus 88 ~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~ll~ 163 (505)
.++ +++.+.+.+|.+|||+||..|.+++++.+.++++|++|+++|++|++..+..|. .+|+||+++++++++++|+
T Consensus 71 ~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~ 150 (291)
T TIGR01505 71 EVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFE 150 (291)
T ss_pred HHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHH
Confidence 887 457777889999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred HHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhh
Q 010637 164 KVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI 243 (505)
Q Consensus 164 ~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~i 243 (505)
.++ ++++++|+.|.|+.+|+++|.+.+..+.+++|++.++++.| ++++++.+++ ..+.+.|++++.+.+.
T Consensus 151 ~lg------~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-id~~~~~~~l---~~~~~~s~~~~~~~~~ 220 (291)
T TIGR01505 151 ALG------KNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAG-VDPVRVRQAL---RGGLAGSTVLEVKGER 220 (291)
T ss_pred Hhc------CCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCcccCHHHHhhChh
Confidence 999 78999999999999999999999999999999999999998 9999999998 4566788988887766
Q ss_pred ccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 010637 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (505)
Q Consensus 244 l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~ 297 (505)
+.. ++|.++|.++.+.||+. ++...|.+.|+|+|+..++ ..+|..+
T Consensus 221 ~~~-~~~~~~f~~~~~~KDl~------~~~~~a~~~g~~~~~~~~~-~~~~~~a 266 (291)
T TIGR01505 221 VID-RTFKPGFRIDLHQKDLN------LALDSAKAVGANLPNTATV-QELFNTL 266 (291)
T ss_pred hhc-CCCCCCcchHHHHHHHH------HHHHHHHHcCCCChhHHHH-HHHHHHH
Confidence 554 56889999999999996 8999999999999988865 5555554
No 20
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=3.6e-35 Score=343.63 Aligned_cols=266 Identities=18% Similarity=0.247 Sum_probs=239.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
++++|||||+|.||.+||.+|+++||+|.+|||++++++.+.+.+ ...+.++.++++. +|+||+|||++.
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G-------a~~~~s~~e~~~~---aDvVi~~V~~~~ 392 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAG-------GLAGNSPAEVAKD---VDVLVIMVANEV 392 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEecCChH
Confidence 457899999999999999999999999999999999999887754 3457899999987 999999999988
Q ss_pred hHHHHH---HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHH--CCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHH
Q 010637 85 PVDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ--KGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNI 158 (505)
Q Consensus 85 ~v~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~--~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v 158 (505)
++++|+ .++.+.+.+|++|||+||+.|..++++.+.+++ +|++|+++||+||+.++..|+ ++|+||++++++++
T Consensus 393 ~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~ 472 (1378)
T PLN02858 393 QAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSA 472 (1378)
T ss_pred HHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHH
Confidence 999998 457788889999999999999999999999998 999999999999999999999 99999999999999
Q ss_pred HHHHHHHhcccCCCCceEEe-CCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHH
Q 010637 159 RDILQKVAAQVDDGPCVTYI-GEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLV 237 (505)
Q Consensus 159 ~~ll~~iga~~~~~~~v~~v-G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~ 237 (505)
+|+|+.++ +.++++ |+.|+|+.+|+++|.+.+..+++++|++.++++.| +|++.+.+++ +.+.+.||.+
T Consensus 473 ~plL~~lg------~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~G-ld~~~l~evl---~~s~g~s~~~ 542 (1378)
T PLN02858 473 GSVLSALS------EKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLG-LNTRKLFDII---SNAGGTSWMF 542 (1378)
T ss_pred HHHHHHHh------CcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HhhcccChhh
Confidence 99999999 678874 67999999999999999999999999999999999 9999999998 4567788888
Q ss_pred hhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcc
Q 010637 238 EITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGL 298 (505)
Q Consensus 238 ~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~ 298 (505)
+...+.+.. ++|+++|.++.+.||++ ++.+.|.++|+|+|+...+ ..+|..+.
T Consensus 543 ~~~~~~~l~-~d~~~~f~l~l~~KDl~------l~~~~a~~~g~~~pl~~~~-~~~~~~a~ 595 (1378)
T PLN02858 543 ENRVPHMLD-NDYTPYSALDIFVKDLG------IVSREGSSRKIPLHLSTVA-HQLFLAGS 595 (1378)
T ss_pred hhccchhhc-CCCCCCchhHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHHH
Confidence 877665554 56889999999999997 9999999999999988754 56665554
No 21
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.97 E-value=1.5e-31 Score=246.55 Aligned_cols=159 Identities=28% Similarity=0.489 Sum_probs=142.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|++|||||+|.||.+||++|+++||+|++|||++++.+++.+.+ ++.++|++|+++. +|+||+|||++.+
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g-------~~~~~s~~e~~~~---~dvvi~~v~~~~~ 70 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAG-------AEVADSPAEAAEQ---ADVVILCVPDDDA 70 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTT-------EEEESSHHHHHHH---BSEEEE-SSSHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhh-------hhhhhhhhhHhhc---ccceEeecccchh
Confidence 47999999999999999999999999999999999999998864 6789999999998 9999999999999
Q ss_pred HHHHHHH--HHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHHHH
Q 010637 86 VDQTIAA--LSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (505)
Q Consensus 86 v~~vl~~--l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~ll 162 (505)
+++++.+ +.+.+.+|++|||+||..|..++++.+.+.++|++|+++||+||+.++..|+ ++|+||+++++++++|+|
T Consensus 71 v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l 150 (163)
T PF03446_consen 71 VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLL 150 (163)
T ss_dssp HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHH
T ss_pred hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHH
Confidence 9999988 9999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHhcccCCCCceE-EeCC
Q 010637 163 QKVAAQVDDGPCVT-YIGE 180 (505)
Q Consensus 163 ~~iga~~~~~~~v~-~vG~ 180 (505)
+.++ .+++ ++||
T Consensus 151 ~~~~------~~v~~~~G~ 163 (163)
T PF03446_consen 151 EAMG------KNVYHYVGP 163 (163)
T ss_dssp HHHE------EEEEEE-ES
T ss_pred HHHh------CCceeeeCc
Confidence 9999 6788 4575
No 22
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.96 E-value=1.6e-27 Score=251.10 Aligned_cols=251 Identities=18% Similarity=0.170 Sum_probs=205.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhh---------------cccCCCCeeeeCCHHHHHhhcC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA---------------HREGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~---------------~~~g~~~i~~~~s~~e~v~~l~ 71 (505)
|+|||||+|.||.++|.+|+++||+|++||+++++++.+.+.. ...| +++.++++.++++.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g--~l~~~~~~~~~~~~-- 76 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAG--RLRATTDYEDAIRD-- 76 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcC--CeEEECCHHHHHhh--
Confidence 4899999999999999999999999999999999998876421 0011 36777888887776
Q ss_pred CCcEEEEEcCCCc---------hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC--CCe-EEeCCCCCCHHH
Q 010637 72 RPRSVIILVKAGS---------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--GLL-YLGMGVSGGEEG 139 (505)
Q Consensus 72 ~advIil~vp~~~---------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~--gi~-~i~~pvsGg~~~ 139 (505)
+|+||+|||++. .+..+++++.+.+.+|++||++||..|.+++++...+.++ |.. +.+.|++++|+.
T Consensus 77 -advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~ 155 (411)
T TIGR03026 77 -ADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEF 155 (411)
T ss_pred -CCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCc
Confidence 999999999874 3778888899999999999999999999999987655444 443 566788888877
Q ss_pred hhcCC---------ccccCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHH
Q 010637 140 ARHGP---------SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK 210 (505)
Q Consensus 140 a~~G~---------~im~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~ 210 (505)
+..|. .++.|+++++.++++++|+.++. ..++++++.++|+.+|+++|.+.+..+++++|+..+++
T Consensus 156 ~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~ 230 (411)
T TIGR03026 156 LREGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIE-----DGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICE 230 (411)
T ss_pred CCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcc-----CCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77775 57899999999999999999971 25888999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCch--hHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHH
Q 010637 211 HVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGE--LVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 211 ~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~--~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
+.| +|++++.+++. .+. .+.. ..|.|+| -...+.||+. +....|.++|+++|++.+
T Consensus 231 ~~G-iD~~~v~~~~~---~~~----------~i~~--~~~~pg~g~gg~c~~KD~~------~l~~~a~~~g~~~~l~~~ 288 (411)
T TIGR03026 231 ALG-IDVYEVIEAAG---TDP----------RIGF--NFLNPGPGVGGHCIPKDPL------ALIYKAKELGYNPELIEA 288 (411)
T ss_pred HhC-CCHHHHHHHhC---CCC----------CCCC--CcCCCCCCCCCCchhhhHH------HHHHHHHhcCCCcHHHHH
Confidence 999 99999999872 221 1111 2345544 4556888885 788999999999999886
Q ss_pred H
Q 010637 289 S 289 (505)
Q Consensus 289 a 289 (505)
+
T Consensus 289 ~ 289 (411)
T TIGR03026 289 A 289 (411)
T ss_pred H
Confidence 5
No 23
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.92 E-value=1.3e-23 Score=221.08 Aligned_cols=206 Identities=13% Similarity=0.077 Sum_probs=169.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHh------------hcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL------------SIQRP 73 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~------------~l~~a 73 (505)
+++|+|||+|.||.+||.+|+++||+|++||+++++++.+..... .+ ....+++++. .++.+
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~-----~~-~e~~l~~~l~~~~~~g~l~~~~~~~~a 76 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEI-----HI-VEPDLDMVVKTAVEGGYLRATTTPEPA 76 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCC-----Cc-CCCCHHHHHHHHhhcCceeeecccccC
Confidence 368999999999999999999999999999999999987543210 00 0112222211 01249
Q ss_pred cEEEEEcCCC---------chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCC--------------eEEe
Q 010637 74 RSVIILVKAG---------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL--------------LYLG 130 (505)
Q Consensus 74 dvIil~vp~~---------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi--------------~~i~ 130 (505)
|+||+|||++ ..+..+++++.+++++|++||+.||..|.+++++...+.+++. +++.
T Consensus 77 Dvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~ 156 (415)
T PRK11064 77 DAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAY 156 (415)
T ss_pred CEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEE
Confidence 9999999986 5788888999999999999999999999999999887776533 3456
Q ss_pred CC--CCCCHHHhhcCC-ccccCC-CHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHH
Q 010637 131 MG--VSGGEEGARHGP-SLMPGG-SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAY 206 (505)
Q Consensus 131 ~p--vsGg~~~a~~G~-~im~gg-~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~ 206 (505)
+| +.+|...+..+. ..++|| +++++++++++|+.++ +.++++++.++|+.+|+++|.+.+..+++++|+.
T Consensus 157 ~PE~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~------~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~ 230 (415)
T PRK11064 157 CPERVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFL------EGECVVTNSRTAEMCKLTENSFRDVNIAFANELS 230 (415)
T ss_pred CCCccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhc------CCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 666666555555 567788 9999999999999999 6778999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHH
Q 010637 207 DVLKHVGGLSNAELAEIF 224 (505)
Q Consensus 207 ~l~~~~g~l~~~~i~~v~ 224 (505)
.++++.| +|.+++.+.+
T Consensus 231 ~lae~~G-iD~~~v~~~~ 247 (415)
T PRK11064 231 LICADQG-INVWELIRLA 247 (415)
T ss_pred HHHHHhC-CCHHHHHHHh
Confidence 9999999 9999999887
No 24
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.92 E-value=2.2e-24 Score=220.86 Aligned_cols=285 Identities=13% Similarity=0.048 Sum_probs=206.4
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhccc----C-CC--CeeeeCCHHHHHhhcCCC
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE----G-QL--PLTGHYTPRDFVLSIQRP 73 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~----g-~~--~i~~~~s~~e~v~~l~~a 73 (505)
|++ +|+|+|||+|.||..||.+|+++||+|++|+|++++.+.+...+.+. | .+ ++..+++++++++. +
T Consensus 1 ~~~--~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~---a 75 (328)
T PRK14618 1 MHH--GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAG---A 75 (328)
T ss_pred CCC--CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcC---C
Confidence 444 46899999999999999999999999999999999888877542110 0 00 25567788887766 9
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCC-Cchh--HHHHHHHHHH---CCCeEEeCCCCCCHHHhhcCC-cc
Q 010637 74 RSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE-WYLN--TERRIHEASQ---KGLLYLGMGVSGGEEGARHGP-SL 146 (505)
Q Consensus 74 dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~-~~~~--t~~~~~~l~~---~gi~~i~~pvsGg~~~a~~G~-~i 146 (505)
|+||+++|+. .+++++ +.+.++.++|+++|+ .+.+ .+.+.+.+.+ +++.+++.|....+.+...+. .+
T Consensus 76 D~Vi~~v~~~-~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~ 150 (328)
T PRK14618 76 DFAVVAVPSK-ALRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATV 150 (328)
T ss_pred CEEEEECchH-HHHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEE
Confidence 9999999996 566665 445678899999995 4443 5566666665 677777777554444433455 77
Q ss_pred ccCCCHHHHHHHHHHHHHHhcccCCCCceE--------EeCC---------CcchhhhhhHhhhHHHhHhhHHHHHHHHH
Q 010637 147 MPGGSFEAYNNIRDILQKVAAQVDDGPCVT--------YIGE---------GGSGNFVKMVHNGIEYGDMQLISEAYDVL 209 (505)
Q Consensus 147 m~gg~~ea~~~v~~ll~~iga~~~~~~~v~--------~vG~---------~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~ 209 (505)
+.|++++.+++++++|+..+. .++ +++. .|.+..+|+.+|......++.++|++.++
T Consensus 151 ~~~~~~~~~~~v~~ll~~~~~------~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la 224 (328)
T PRK14618 151 VASPEPGLARRVQAAFSGPSF------RVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFG 224 (328)
T ss_pred EEeCCHHHHHHHHHHhCCCcE------EEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 899999999999999998883 343 3443 58999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHhcc-CCcchhHHhhhhh--hcccc---ccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCc
Q 010637 210 KHVGGLSNAELAEIFDEWNK-GELESFLVEITAD--IFKVK---DEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAA 283 (505)
Q Consensus 210 ~~~g~l~~~~i~~v~~~~~~-g~~~s~l~~~~~~--il~~~---~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~ 283 (505)
++.| ++++.+.++....+- ++..|+..+.+.. .+.+. +++.+.|.+....+|+. .+.+.+.++|+++
T Consensus 225 ~~~G-~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~------~~~~la~~~~~~~ 297 (328)
T PRK14618 225 VALG-AEEATFYGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVK------ALDAWAKAHGHDL 297 (328)
T ss_pred HHhC-CCccchhcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHH------HHHHHHHHhCCCC
Confidence 9999 999999888521000 2334555555421 22221 12344566666777775 8899999999999
Q ss_pred chHHHHHHHHHHhcchHHHHHHHHHhc
Q 010637 284 PTIAASLDCRYLSGLKEEREKAAKVLK 310 (505)
Q Consensus 284 p~i~~av~~r~~s~~~~~r~~~~~~~~ 310 (505)
|++..+ .+++...++.......++.
T Consensus 298 Pl~~~~--~~~~~~~~~~~~~~~~~~~ 322 (328)
T PRK14618 298 PIVEAV--ARVARGGWDPLAGLRSLMG 322 (328)
T ss_pred CHHHHH--HHHHhCCCCHHHHHHHHhc
Confidence 998753 4555555566666666653
No 25
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.91 E-value=1.2e-23 Score=214.79 Aligned_cols=281 Identities=13% Similarity=0.100 Sum_probs=193.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccC---C----CCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREG---Q----LPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g---~----~~i~~~~s~~e~v~~l~~advIil 78 (505)
||+|+|||+|.||..+|.+|+++||+|.+|+|++++++.+.+.+.... . .++..+.+++++++. +|+||+
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~D~vi~ 77 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALAD---ADLILV 77 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhC---CCEEEE
Confidence 368999999999999999999999999999999999888876531100 0 025567788877766 999999
Q ss_pred EcCCCchHHHHHHHHHhcCCCCcEEEecCCCCc-hhHHHHHHHHHHC-----CCeEEeCCCCCCHHHhhcCC-ccccCCC
Q 010637 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWY-LNTERRIHEASQK-----GLLYLGMGVSGGEEGARHGP-SLMPGGS 151 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~-~~t~~~~~~l~~~-----gi~~i~~pvsGg~~~a~~G~-~im~gg~ 151 (505)
|||+ ..++++++++.+.+.++++||+++|+.. ...++..+.+.+. ...++..|..+.+..+..+. .++.|++
T Consensus 78 ~v~~-~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~ 156 (325)
T PRK00094 78 AVPS-QALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTD 156 (325)
T ss_pred eCCH-HHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCC
Confidence 9999 4899999999998889999999985443 3344444444443 34456666655444443334 5667789
Q ss_pred HHHHHHHHHHHHHHhcccCCCCceEEeCC-----------------CcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCC
Q 010637 152 FEAYNNIRDILQKVAAQVDDGPCVTYIGE-----------------GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGG 214 (505)
Q Consensus 152 ~ea~~~v~~ll~~iga~~~~~~~v~~vG~-----------------~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~ 214 (505)
.+.+++++++|+..+ ..+.+..+ .|.+..+|+.+|.+....++.++|++.++++.|
T Consensus 157 ~~~~~~~~~~l~~~~------~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G- 229 (325)
T PRK00094 157 EELAERVQELFHSPY------FRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALG- 229 (325)
T ss_pred HHHHHHHHHHhCCCC------EEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhC-
Confidence 999999999999887 33333222 378888999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhccCC----cchhHHhhhh--hhccccccC-----CCchhHHHHHhhhCCCchHHHHHHHHHHcCCCc
Q 010637 215 LSNAELAEIFDEWNKGE----LESFLVEITA--DIFKVKDEY-----GEGELVDKILDKTGMKGTGKWTVQQAAELSVAA 283 (505)
Q Consensus 215 l~~~~i~~v~~~~~~g~----~~s~l~~~~~--~il~~~~~~-----~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~ 283 (505)
++++.+.++.. .+. ..|+..+... ..+.....+ ..+ .+....+|++ .+++.|.++|+|+
T Consensus 230 ~d~~~~~~~~~---~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~kd~~------~~~~~a~~~~~~~ 299 (325)
T PRK00094 230 ANPETFLGLAG---LGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIG-MVAEGVRTAK------AVYELAKKLGVEM 299 (325)
T ss_pred CChhhhhcccH---hhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcC-CEeecHHHHH------HHHHHHHHhCCCC
Confidence 99999977642 111 1111111111 111110000 000 1223345553 7889999999999
Q ss_pred chHHHHHHHHHHhcchHHHHHHHHHh
Q 010637 284 PTIAASLDCRYLSGLKEEREKAAKVL 309 (505)
Q Consensus 284 p~i~~av~~r~~s~~~~~r~~~~~~~ 309 (505)
|+..++ ...+...++.+..+..++
T Consensus 300 P~~~~~--~~~~~~~~~~~~~~~~~~ 323 (325)
T PRK00094 300 PITEAV--YAVLYEGKDPREAVEDLM 323 (325)
T ss_pred CHHHHH--HHHHcCCCCHHHHHHHHh
Confidence 998754 344555565666555443
No 26
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.91 E-value=4.1e-23 Score=217.39 Aligned_cols=249 Identities=12% Similarity=0.132 Sum_probs=184.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcc------------cCCCCeeeeCCHHHHHhhcCC
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR------------EGQLPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~------------~g~~~i~~~~s~~e~v~~l~~ 72 (505)
..|+|||||+|.||.+||.+|++ ||+|++||+++++++.+. .+.. .| ++...++. +.++.
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g--~l~~t~~~-~~~~~--- 76 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREAR--YLKFTSEI-EKIKE--- 76 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhC--CeeEEeCH-HHHcC---
Confidence 45799999999999999999987 699999999999999988 3321 01 23344444 44555
Q ss_pred CcEEEEEcCCC---------chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHH--CCCeEEe--------CCC
Q 010637 73 PRSVIILVKAG---------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ--KGLLYLG--------MGV 133 (505)
Q Consensus 73 advIil~vp~~---------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~--~gi~~i~--------~pv 133 (505)
+|++|+|||++ ..+....+++.+.+++|++||+.||..|.+++++.+...+ .|..+.+ .++
T Consensus 77 advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v 156 (425)
T PRK15182 77 CNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERI 156 (425)
T ss_pred CCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcC
Confidence 99999999987 3444555788899999999999999999999986554433 3555443 356
Q ss_pred CCCHHHhhcCC--ccccCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHH
Q 010637 134 SGGEEGARHGP--SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKH 211 (505)
Q Consensus 134 sGg~~~a~~G~--~im~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~ 211 (505)
.+|......+. .++.|++++..+.++++++.+.. ..++++++.++|+.+|+++|.+.+..+++++|+..++++
T Consensus 157 ~~G~a~~~~~~~~riv~G~~~~~~~~~~~ly~~~~~-----~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~ 231 (425)
T PRK15182 157 NPGDKKHRLTNIKKITSGSTAQIAELIDEVYQQIIS-----AGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNR 231 (425)
T ss_pred CCCcccccccCCCeEEECCCHHHHHHHHHHHHHHhh-----cCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76765554443 57778888888999999999872 236788999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHH
Q 010637 212 VGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (505)
Q Consensus 212 ~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~a 289 (505)
.| +|.+++.+++ +.. +.+.. .. .+.++++ -+-+|.. ..+..|.++|++++++.+|
T Consensus 232 ~G-iD~~~v~~a~---~~~----~~~~~----~~-pG~vGG~----ClpkD~~------~L~~~a~~~g~~~~l~~~a 286 (425)
T PRK15182 232 LN-IDTEAVLRAA---GSK----WNFLP----FR-PGLVGGH----CIGVDPY------YLTHKSQGIGYYPEIILAG 286 (425)
T ss_pred hC-cCHHHHHHHh---cCC----CCccc----CC-CCccccc----cccccHH------HHHHHHHhcCCCcHHHHHH
Confidence 99 9999999885 221 11110 00 0112222 3344442 4556788999998888765
No 27
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.89 E-value=5.3e-22 Score=201.47 Aligned_cols=250 Identities=12% Similarity=0.088 Sum_probs=184.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH-----------hhcccCC------CCeeeeCCHHHHHhh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD-----------RAHREGQ------LPLTGHYTPRDFVLS 69 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~-----------~~~~~g~------~~i~~~~s~~e~v~~ 69 (505)
++|+|||+|.||.+||.+|+++||+|++||++++..+...+ .+...+. -++..+.+++++++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 58999999999999999999999999999999987765432 1110000 024677888887776
Q ss_pred cCCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCcccc
Q 010637 70 IQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMP 148 (505)
Q Consensus 70 l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~ 148 (505)
+|+|++++|+..+++..+ ..+.+.. ++++++.+||+ .....++.+.+...+..+.+.|+++.... ....|+
T Consensus 83 ---ad~Vi~avpe~~~~k~~~~~~l~~~~-~~~~ii~ssts-~~~~~~la~~~~~~~~~~~~hp~~p~~~~---~lveiv 154 (308)
T PRK06129 83 ---ADYVQESAPENLELKRALFAELDALA-PPHAILASSTS-ALLASAFTEHLAGRERCLVAHPINPPYLI---PVVEVV 154 (308)
T ss_pred ---CCEEEECCcCCHHHHHHHHHHHHHhC-CCcceEEEeCC-CCCHHHHHHhcCCcccEEEEecCCCcccC---ceEEEe
Confidence 999999999976665554 5555554 45566665554 44566777777766778888898763211 123455
Q ss_pred C---CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010637 149 G---GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (505)
Q Consensus 149 g---g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~ 225 (505)
+ ++++++++++++++.+| +.++++++.+.|+ +.|.+ .+++++|++.+++++| +|++++++++.
T Consensus 155 ~~~~t~~~~~~~~~~~~~~lG------~~~v~v~~~~~G~----i~nrl---~~a~~~EA~~l~~~g~-~~~~~id~~~~ 220 (308)
T PRK06129 155 PAPWTAPATLARAEALYRAAG------QSPVRLRREIDGF----VLNRL---QGALLREAFRLVADGV-ASVDDIDAVIR 220 (308)
T ss_pred CCCCCCHHHHHHHHHHHHHcC------CEEEEecCCCccH----HHHHH---HHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 4 89999999999999999 8899999888887 33444 4478899999999998 99999999984
Q ss_pred HhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHH
Q 010637 226 EWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASL 290 (505)
Q Consensus 226 ~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av 290 (505)
.+.+.+|.+ ..+.... |.+++++....+.++.. .....+.+.+.|.|++..-+
T Consensus 221 ---~~~g~~~~~--~gp~~~~-d~~~~~g~~~~~~k~~~------l~~~~~~~~~~~~~~~~~~~ 273 (308)
T PRK06129 221 ---DGLGLRWSF--MGPFETI-DLNAPGGVADYAQRYGP------MYRRMAAERGQPVPWDGELV 273 (308)
T ss_pred ---hccCCCccC--cCHHHHH-hccccccHHHHHHHHHH------HHHhhccccCCCchhhHHHH
Confidence 455555554 3343332 45667788888888864 77788888999999887544
No 28
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.89 E-value=3.2e-22 Score=208.21 Aligned_cols=200 Identities=16% Similarity=0.193 Sum_probs=162.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcc-----------cCCCCeeeeCCHHHHHhhcCCCcE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR-----------EGQLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~-----------~g~~~i~~~~s~~e~v~~l~~adv 75 (505)
|||+|||+|.||.++|..|+. ||+|++||+++++++.+.+.... ....++....++.+++.. +|+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~---ad~ 76 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRD---ADY 76 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcC---CCE
Confidence 489999999999999988775 99999999999999888752100 000135555567777766 999
Q ss_pred EEEEcCCC----------chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-
Q 010637 76 VIILVKAG----------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP- 144 (505)
Q Consensus 76 Iil~vp~~----------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~- 144 (505)
||+|||++ ..++++++++.+ +++|++||+.||..|.+++++.+.+.+.++.| +|+.++.|.
T Consensus 77 vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~-------~PE~l~~G~a 148 (388)
T PRK15057 77 VIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIF-------SPEFLREGKA 148 (388)
T ss_pred EEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEE-------CcccccCCcc
Confidence 99999987 577888888887 68999999999999999999998887766555 344455553
Q ss_pred --------ccccCCCHHHHHHHHHHHHH--HhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCC
Q 010637 145 --------SLMPGGSFEAYNNIRDILQK--VAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGG 214 (505)
Q Consensus 145 --------~im~gg~~ea~~~v~~ll~~--iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~ 214 (505)
.++.|++++..+++.++|.. ++. ...+++++.++|.++|++.|.+.+..+++++|+..++++.|
T Consensus 149 ~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~G- 222 (388)
T PRK15057 149 LYDNLHPSRIVIGERSERAERFAALLQEGAIKQ-----NIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLG- 222 (388)
T ss_pred cccccCCCEEEEEcCcHHHHHHHHHHHhhhhcC-----CCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 57889988888999998854 441 23347899999999999999999999999999999999999
Q ss_pred CCHHHHHHHH
Q 010637 215 LSNAELAEIF 224 (505)
Q Consensus 215 l~~~~i~~v~ 224 (505)
+|.+++.+++
T Consensus 223 iD~~eV~~a~ 232 (388)
T PRK15057 223 LNTRQIIEGV 232 (388)
T ss_pred cCHHHHHHHh
Confidence 9999999987
No 29
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=99.89 E-value=1.2e-23 Score=206.60 Aligned_cols=118 Identities=14% Similarity=0.290 Sum_probs=92.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHHHH
Q 010637 328 KRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFA 407 (505)
Q Consensus 328 ~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~~~ 407 (505)
||||||||||||||+||+++|+|++|+...+..+ .++.+|++.||.| .|+|+||+++.++|++++..+..|+|.+.+
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~--~ei~~vf~~Wn~g-~l~S~Lieit~~il~~~d~~g~~lld~I~d 77 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSN--EEIADVFEEWNKG-ELRSYLIEITADILRKKDETGGPLLDKILD 77 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--H--HHHHHHHHHHHTT-TT-BHHHHHHHHHHT-B-TTSSBGGGGB-S
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccch--hHHHHHHHHHCcC-chhhHHHHHHHHHHhhccCccCcchhhhCC
Confidence 7999999999999999999999999996543111 3566667779999 689999999999999877666799999999
Q ss_pred HHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCChh
Q 010637 408 REMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (505)
Q Consensus 408 ~~~~~~~~~~r~~v~~a~~~gip~p~~saal~--y~~~~~~~~~~ 450 (505)
...++++| ||++++|++.|||+|+|++||+ ++++++.+|..
T Consensus 78 ~a~~kGtG--~Wt~~~a~~~gvp~p~I~~a~~aR~~S~~k~~R~~ 120 (291)
T PF00393_consen 78 KAGQKGTG--KWTVQEALELGVPAPTIAAAVFARFLSAQKEERVA 120 (291)
T ss_dssp ----BSHH--HHHHHHHHHHT---HHHHHHHHHHHHHHTHHHHHH
T ss_pred ccCCCCcc--chHHHHHHHhCCCccHHHHHHHHHHHhcCCcHHHH
Confidence 99999999 9999999999999999999999 77777777644
No 30
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.88 E-value=4.3e-22 Score=202.10 Aligned_cols=260 Identities=15% Similarity=0.181 Sum_probs=184.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.|+|+|||+|.||.+||.+|+++||+|.+|+|++. .++++++++ +|+||+++|+. .
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~--------------------~~~~~~~~~---advvi~~vp~~-~ 59 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG--------------------LSLAAVLAD---ADVIVSAVSMK-G 59 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC--------------------CCHHHHHhc---CCEEEEECChH-H
Confidence 36899999999999999999999999999999853 256677766 99999999994 8
Q ss_pred HHHHHHHHHhc-CCCCcEEEecCC-CCchhHHHHHHHHHHCCCeEEeCCCC--CCHHHhh---cC--C-ccccCCCHHHH
Q 010637 86 VDQTIAALSEH-MSPGDCIIDGGN-EWYLNTERRIHEASQKGLLYLGMGVS--GGEEGAR---HG--P-SLMPGGSFEAY 155 (505)
Q Consensus 86 v~~vl~~l~~~-l~~g~iIId~st-~~~~~t~~~~~~l~~~gi~~i~~pvs--Gg~~~a~---~G--~-~im~gg~~ea~ 155 (505)
++.+++.+.++ +.++.+||++++ ..|.......+.+.. +|.+.|+. +|+..+. .+ . .+++|++.+++
T Consensus 60 ~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~---~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~ 136 (308)
T PRK14619 60 VRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQA---AFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAA 136 (308)
T ss_pred HHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHH---HcCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHH
Confidence 99999888774 788999999988 444444334444433 24456663 3433221 22 3 78889999999
Q ss_pred HHHHHHHHHHhcccCCCCceEEeCC-----------------CcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHH
Q 010637 156 NNIRDILQKVAAQVDDGPCVTYIGE-----------------GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNA 218 (505)
Q Consensus 156 ~~v~~ll~~iga~~~~~~~v~~vG~-----------------~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~ 218 (505)
++++++|+..+ ..+++.++ .|.+..+|+.+|......+++++|+..++++.| ++++
T Consensus 137 ~~v~~ll~~~~------~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G-~~~~ 209 (308)
T PRK14619 137 ETVQQIFSSER------FRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLG-AQTE 209 (308)
T ss_pred HHHHHHhCCCc------EEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhC-CCcc
Confidence 99999999887 45654443 233455569999999999999999999999999 9988
Q ss_pred HHHHHHHHhccCCcchhHHhhhhhhccccccCCCchh------HHHHHhhhCCCchH----HHHHHHHHHcCCCcchHHH
Q 010637 219 ELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGEL------VDKILDKTGMKGTG----KWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 219 ~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~------l~~i~~~~~~kgtg----~~~~~~A~~~gvp~p~i~~ 288 (505)
.+.++ .|.+++++.. ..+.. ++|..+|. ++.+.+...++.+| +.+.+.+.++|+++|++.+
T Consensus 210 t~~~~-----~g~gd~~~t~--~~~~~--rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~ 280 (308)
T PRK14619 210 TFYGL-----SGLGDLLATC--TSPLS--RNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQ 280 (308)
T ss_pred ccccc-----cchhhhheee--cCCCC--ccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHH
Confidence 88764 2555554411 11111 22333333 33334434333333 3677889999999999985
Q ss_pred HHHHHHHhcchHHHHHHHHHhc
Q 010637 289 SLDCRYLSGLKEEREKAAKVLK 310 (505)
Q Consensus 289 av~~r~~s~~~~~r~~~~~~~~ 310 (505)
+ .+.+....+.+.....++.
T Consensus 281 v--~~i~~~~~~~~~~~~~l~~ 300 (308)
T PRK14619 281 V--YRLLQGEITPQQALEELME 300 (308)
T ss_pred H--HHHHcCCCCHHHHHHHHHc
Confidence 3 4556666677777777764
No 31
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.85 E-value=5.9e-22 Score=197.54 Aligned_cols=117 Identities=12% Similarity=0.229 Sum_probs=104.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHH---HHHHhcCCCceecccHHHHHHHHhcCCC-CCCCc
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGE---LARIWKGGCIIRAVFLDRIKKAYQRNPN-LASLV 401 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~---i~~iW~~Gciirs~lL~~i~~~~~~~~~-~~~ll 401 (505)
++||||||||||||||+||.++|.|++||..- +|+.++ |+.-||+| .+.|||++++.++|+.+++ .++.|
T Consensus 177 GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~l-----gls~~ei~~vF~~WN~g-eL~SYLIeIT~~IL~~kD~~~~kpl 250 (473)
T COG0362 177 GAGHFVKMVHNGIEYGDMQLIAEAYDILKDGL-----GLSAEEIAEVFEEWNKG-ELDSYLIEITADILRKKDEEGGKPL 250 (473)
T ss_pred CCCceeeeeecCchHHHHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHhccC-cchHHHHHHHHHHHhhcCcccCCch
Confidence 58999999999999999999999999999654 355555 55559999 8999999999999998654 45699
Q ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCChh
Q 010637 402 VDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (505)
Q Consensus 402 ~~~~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~--y~~~~~~~~~~ 450 (505)
+|.+++.+.||+++ ||+++.|+++|+|+|.|++|++ |+++++.+|..
T Consensus 251 vd~ILD~AgQKGTG--kWt~~~AldlGvP~t~I~eaVfAR~lSs~K~eR~~ 299 (473)
T COG0362 251 VDKILDKAGQKGTG--KWTVISALDLGVPLTLITEAVFARYLSSLKDERVA 299 (473)
T ss_pred HHHHHHHhcCCCcc--hhhHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999 9999999999999999999999 89999888743
No 32
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.84 E-value=2.1e-20 Score=175.17 Aligned_cols=197 Identities=32% Similarity=0.505 Sum_probs=144.3
Q ss_pred HHHHhhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcC
Q 010637 64 RDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHG 143 (505)
Q Consensus 64 ~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G 143 (505)
+++...|..-|+||--=.+ .-++.+..-...-.+|--++|++|+--..- .++|..| +.||++.+...
T Consensus 78 ~~la~~L~~GDivIDGGNS--~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G-------~~~G~~l----MiGG~~~a~~~ 144 (300)
T COG1023 78 DDLAPLLSAGDIVIDGGNS--NYKDSLRRAKLLAEKGIHFLDVGTSGGVWG-------AERGYCL----MIGGDEEAVER 144 (300)
T ss_pred HHHHhhcCCCCEEEECCcc--chHHHHHHHHHHHhcCCeEEeccCCCCchh-------hhcCceE----EecCcHHHHHH
Confidence 4455556667988876543 345666554445568889999999853222 2345544 35565554331
Q ss_pred CccccCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCC--HHHHH
Q 010637 144 PSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLS--NAELA 221 (505)
Q Consensus 144 ~~im~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~--~~~i~ 221 (505)
- +..++.+.+ ..-| ..|+||.|+|||+|||||+|||++||+++|.+.++++.- .| .+++.
T Consensus 145 ~-------~pif~~lA~--ge~G--------yl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~-fD~D~~~VA 206 (300)
T COG1023 145 L-------EPIFKALAP--GEDG--------YLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSP-FDYDLEAVA 206 (300)
T ss_pred H-------HHHHHhhCc--CcCc--------cccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCC-CCCCHHHHH
Confidence 1 111111111 0334 789999999999999999999999999999999999865 54 55555
Q ss_pred HHHHHhccCC-cchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchH
Q 010637 222 EIFDEWNKGE-LESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300 (505)
Q Consensus 222 ~v~~~~~~g~-~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~~ 300 (505)
++ ||.|+ .+|||++.+...+++ + .-++.+.+.+...|+||||+++|.++|||+|+|+.|+..||.|...+
T Consensus 207 ~v---W~hGSVIrSWLldLt~~Af~~-d-----~~L~q~~g~v~dSGEGrWTv~~aldlgvpaPVia~al~~Rf~S~~~d 277 (300)
T COG1023 207 EV---WNHGSVIRSWLLDLTAEAFKK-D-----PDLDQISGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRSRQDD 277 (300)
T ss_pred HH---HhCcchHHHHHHHHHHHHHhh-C-----CCHHHhcCeeccCCCceeehHHHHhcCCCchHHHHHHHHHHhccchh
Confidence 55 88865 689999999988874 2 25789999999999999999999999999999999999999996553
No 33
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.84 E-value=2.4e-19 Score=183.38 Aligned_cols=197 Identities=12% Similarity=0.095 Sum_probs=159.0
Q ss_pred CcEEEEcccHH--------------------HHHHHHHHHhCCCcEEEEeCChHHH-----HHHHHhhcccCCCCeeeeC
Q 010637 7 SRIGLAGLAVM--------------------GQNLALNVAEKGFPISVYNRTTSKV-----DETLDRAHREGQLPLTGHY 61 (505)
Q Consensus 7 ~~IgIIGlG~M--------------------G~~lA~~La~~G~~V~v~dr~~~~~-----~~l~~~~~~~g~~~i~~~~ 61 (505)
|||.|+|+|+- |.+||.+|+++||+|++|||++++. +.+... ++..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~-------Gi~~as 73 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDA-------GVKVVS 73 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHC-------CCEEeC
Confidence 57888888864 7889999999999999999998743 333332 367778
Q ss_pred CHHHHHhhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhH-HHHHHHHH----HCCCeEEe-CCCCC
Q 010637 62 TPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT-ERRIHEAS----QKGLLYLG-MGVSG 135 (505)
Q Consensus 62 s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t-~~~~~~l~----~~gi~~i~-~pvsG 135 (505)
++.++++. +|+||+|+|.+..+++++.++.+.++++.+|||+||+.+... +.+.+.+. ..|+++.. +++.|
T Consensus 74 d~~eaa~~---ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~G 150 (342)
T PRK12557 74 DDAEAAKH---GEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPG 150 (342)
T ss_pred CHHHHHhC---CCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCccccc
Confidence 88888876 999999999976589999999999999999999999988876 45555554 34666653 45556
Q ss_pred CHHHhhcCCccccC--------CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHH
Q 010637 136 GEEGARHGPSLMPG--------GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYD 207 (505)
Q Consensus 136 g~~~a~~G~~im~g--------g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~ 207 (505)
++.+.. .+|.| ++++.+++++++|+.++ ..+++++ .|.++.+|+++|.+.+..++.++|++.
T Consensus 151 ae~g~l---~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G------~~v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~~ 220 (342)
T PRK12557 151 TPQHGH---YVIAGKTTNGTELATEEQIEKCVELAESIG------KEPYVVP-ADVVSAVADMGSLVTAVALSGVLDYYS 220 (342)
T ss_pred cccchh---eEEeCCCcccccCCCHHHHHHHHHHHHHcC------CEEEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543322 34444 49999999999999999 7787777 599999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHH
Q 010637 208 VLKHVGGLSNAELAEIF 224 (505)
Q Consensus 208 l~~~~g~l~~~~i~~v~ 224 (505)
++++.| .++.++.+-+
T Consensus 221 l~~~~~-~~p~~~~~~~ 236 (342)
T PRK12557 221 VGTKII-KAPKEMIEKQ 236 (342)
T ss_pred HHHHhC-CCHHHHHHHH
Confidence 999999 8888776654
No 34
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.82 E-value=3.6e-19 Score=191.57 Aligned_cols=195 Identities=14% Similarity=0.143 Sum_probs=151.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhh---------------cccCCCCeeeeCCHHHHHhh
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA---------------HREGQLPLTGHYTPRDFVLS 69 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~---------------~~~g~~~i~~~~s~~e~v~~ 69 (505)
+.++|||||+|.||.+||.+|+++||+|.+||+++++.+.+.+.. ...+ ++..++++++++++
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g--~i~~~~~~~ea~~~ 80 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEG--RLTFCASLAEAVAG 80 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhh--ceEeeCCHHHHhcC
Confidence 456899999999999999999999999999999999877653210 0001 36778899888877
Q ss_pred cCCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccc
Q 010637 70 IQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLM 147 (505)
Q Consensus 70 l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im 147 (505)
+|+|++++|+..+++..+ .++.+.++++ .||++||+.+..+ .+.+.+..++..++++|+... ..++ ..+
T Consensus 81 ---aD~Vieavpe~~~vk~~l~~~l~~~~~~~-~iI~SsTsgi~~s-~l~~~~~~~~r~~~~hP~nP~----~~~~Lvev 151 (495)
T PRK07531 81 ---ADWIQESVPERLDLKRRVLAEIDAAARPD-ALIGSSTSGFLPS-DLQEGMTHPERLFVAHPYNPV----YLLPLVEL 151 (495)
T ss_pred ---CCEEEEcCcCCHHHHHHHHHHHHhhCCCC-cEEEEcCCCCCHH-HHHhhcCCcceEEEEecCCCc----ccCceEEE
Confidence 999999999987777755 6677766665 4667777766544 666777777778888887632 3445 667
Q ss_pred cCCC---HHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhH-HHHHHHHHHHhCCCCHHHHHHH
Q 010637 148 PGGS---FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQL-ISEAYDVLKHVGGLSNAELAEI 223 (505)
Q Consensus 148 ~gg~---~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~-i~Ea~~l~~~~g~l~~~~i~~v 223 (505)
++|+ ++++++++++|+.+| +.+++++. .++|.+...++.. ++|++.|++++| +++++++++
T Consensus 152 v~g~~t~~e~~~~~~~~~~~lG------~~~v~~~k--------~~~gfi~nrl~~a~~~EA~~L~~~g~-~s~~~id~~ 216 (495)
T PRK07531 152 VGGGKTSPETIRRAKEILREIG------MKPVHIAK--------EIDAFVGDRLLEALWREALWLVKDGI-ATTEEIDDV 216 (495)
T ss_pred cCCCCCCHHHHHHHHHHHHHcC------CEEEeecC--------CCcchhHHHHHHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 7775 799999999999999 88889874 5555555555666 499999999988 999999999
Q ss_pred HH
Q 010637 224 FD 225 (505)
Q Consensus 224 ~~ 225 (505)
+.
T Consensus 217 ~~ 218 (495)
T PRK07531 217 IR 218 (495)
T ss_pred Hh
Confidence 84
No 35
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.82 E-value=1.1e-20 Score=185.52 Aligned_cols=121 Identities=10% Similarity=0.147 Sum_probs=108.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccH
Q 010637 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404 (505)
Q Consensus 325 ~~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~ 404 (505)
.++|||||||||||||++||.++|.|++|+.+....+ ..+++++.-||.| .+.|+|++++.++|+-+++....|+|+
T Consensus 180 ~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~--~eia~vF~~WN~g-eleSfLieIT~dIlk~~d~~G~~lv~k 256 (487)
T KOG2653|consen 180 GGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSN--DEIAEVFDDWNKG-ELESFLIEITADILKFKDEDGKPLVDK 256 (487)
T ss_pred CCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcH--HHHHHHHHhhccc-chhHHHHHHhHHHhheeccCCChHHHH
Confidence 4689999999999999999999999999998765443 5677777779999 899999999999998776666789999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCChh
Q 010637 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (505)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~--y~~~~~~~~~~ 450 (505)
+.+...+|+++ +|+|+.|+++|+|+|.|.+|++ ++++++.+|..
T Consensus 257 I~D~aGqKGTG--kwt~~~Ale~g~Pv~lI~eavfaRclS~lKdeR~~ 302 (487)
T KOG2653|consen 257 ILDKAGQKGTG--KWTVISALELGVPVTLIGEAVFARCLSALKDERVR 302 (487)
T ss_pred HHhhhcCCCcc--HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999 88888888754
No 36
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.81 E-value=7.5e-19 Score=176.74 Aligned_cols=193 Identities=14% Similarity=0.155 Sum_probs=146.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHh-------hcccCC----------CCeeeeCCHHHHHhh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-------AHREGQ----------LPLTGHYTPRDFVLS 69 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~-------~~~~g~----------~~i~~~~s~~e~v~~ 69 (505)
.+|+|||+|.||.+||.+|+++||+|++||+++++++++.+. +...+. .+++.+.++++.++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 579999999999999999999999999999999988776531 110000 035667888887776
Q ss_pred cCCCcEEEEEcCCCchHHHH-HHHHHhcCCCCcEE-EecCCCCchhHHHHHHHH-HHCCCeEEeCCCCCCHHHhhcCC-c
Q 010637 70 IQRPRSVIILVKAGSPVDQT-IAALSEHMSPGDCI-IDGGNEWYLNTERRIHEA-SQKGLLYLGMGVSGGEEGARHGP-S 145 (505)
Q Consensus 70 l~~advIil~vp~~~~v~~v-l~~l~~~l~~g~iI-Id~st~~~~~t~~~~~~l-~~~gi~~i~~pvsGg~~~a~~G~-~ 145 (505)
+|+||+|+|++..++.. +.++.+.++++.+| +++||..+....+..+.. +..|+||+ .|++++ + .
T Consensus 82 ---aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~-~Pv~~~-------~Lv 150 (288)
T PRK09260 82 ---ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFF-NPVHKM-------KLV 150 (288)
T ss_pred ---CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecC-CCcccC-------ceE
Confidence 99999999998776655 47788888888866 688887765543332221 12488888 788764 4 6
Q ss_pred cccCC---CHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHH
Q 010637 146 LMPGG---SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (505)
Q Consensus 146 im~gg---~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~ 222 (505)
.|++| +++++++++++++.++ +.++++++ ..|+ +.|.+.+ .+++|++.+++++. .++++++.
T Consensus 151 e~v~g~~t~~~~~~~~~~~l~~lg------~~~v~v~d-~~Gf----~~nRl~~---~~~~ea~~~~~~gv-~~~~~iD~ 215 (288)
T PRK09260 151 ELIRGLETSDETVQVAKEVAEQMG------KETVVVNE-FPGF----VTSRISA---LVGNEAFYMLQEGV-ATAEDIDK 215 (288)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcC------CeEEEecC-cccH----HHHHHHH---HHHHHHHHHHHcCC-CCHHHHHH
Confidence 67777 9999999999999999 88999985 3444 4465544 45699999999876 78999999
Q ss_pred HHH
Q 010637 223 IFD 225 (505)
Q Consensus 223 v~~ 225 (505)
++.
T Consensus 216 ~~~ 218 (288)
T PRK09260 216 AIR 218 (288)
T ss_pred HHH
Confidence 874
No 37
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.79 E-value=1.7e-17 Score=164.97 Aligned_cols=236 Identities=16% Similarity=0.136 Sum_probs=165.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC----cEEEE-eCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF----PISVY-NRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~----~V~v~-dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
|||||||+|.||.+|+.+|.++|+ +|++| ||++++.+.+.+. ++..+.++.++++. +|+||+|+|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~-------g~~~~~~~~e~~~~---aDvVil~v~ 70 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSL-------GVKTAASNTEVVKS---SDVIILAVK 70 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHc-------CCEEeCChHHHHhc---CCEEEEEEC
Confidence 589999999999999999999998 89999 9999998877654 35677888888876 999999997
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe-CCCCCCHHHhhcCC-ccccCCCHHHHHHHH
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGP-SLMPGGSFEAYNNIR 159 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsGg~~~a~~G~-~im~gg~~ea~~~v~ 159 (505)
+ ..+++++.++.+.+.++++||+..++..... +.+.+... +++. +|..+...+..... +...+++++.++.++
T Consensus 71 ~-~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~--l~~~~~~~--~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 145 (266)
T PLN02688 71 P-QVVKDVLTELRPLLSKDKLLVSVAAGITLAD--LQEWAGGR--RVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVA 145 (266)
T ss_pred c-HHHHHHHHHHHhhcCCCCEEEEecCCCcHHH--HHHHcCCC--CEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHH
Confidence 6 5799999999888889999998766553332 23332221 5664 77766554433322 334456889999999
Q ss_pred HHHHHHhcccCCCCceEEeCC---------CcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccC
Q 010637 160 DILQKVAAQVDDGPCVTYIGE---------GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKG 230 (505)
Q Consensus 160 ~ll~~iga~~~~~~~v~~vG~---------~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g 230 (505)
++|+.+| . ++++++ .|+|.. +.+.+++.++|+ +.+.| +++++..+++.+ +
T Consensus 146 ~l~~~~G------~-~~~~~e~~~d~~~~~~g~g~a-------~~~~~~~a~~ea---~~~~G-l~~~~a~~~~~~---~ 204 (266)
T PLN02688 146 TLFGAVG------K-IWVVDEKLLDAVTGLSGSGPA-------YIFLAIEALADG---GVAAG-LPRDVALSLAAQ---T 204 (266)
T ss_pred HHHHhCC------C-EEEeCHHHcchhHhhhcCHHH-------HHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH---H
Confidence 9999999 6 777743 455544 356678888888 67778 999999999853 2
Q ss_pred CcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHH
Q 010637 231 ELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 231 ~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
...+.. .+...+ ..+ -+.+......-||..-.+....+.|++-.++.+
T Consensus 205 ~~gs~~------l~~~~~-~~~---~~l~~~v~spgG~t~~~l~~l~~~g~~~~~~~a 252 (266)
T PLN02688 205 VLGAAK------MVLETG-KHP---GQLKDMVTSPGGTTIAGVHELEKGGFRAALMNA 252 (266)
T ss_pred HHHHHH------HHHhcC-CCH---HHHHHhCCCCchHHHHHHHHHHHCChHHHHHHH
Confidence 222221 122111 122 233333444456666666777788888665553
No 38
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.78 E-value=8.4e-18 Score=168.75 Aligned_cols=200 Identities=16% Similarity=0.156 Sum_probs=150.5
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHH-----------HHhhcccCC------CCeeeeCCH
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDET-----------LDRAHREGQ------LPLTGHYTP 63 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l-----------~~~~~~~g~------~~i~~~~s~ 63 (505)
|++. +.+|||||+|.||.+||.+|+.+||+|++||++++.++.. .+.+..... -++++++++
T Consensus 1 ~~~~-~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~ 79 (286)
T PRK07819 1 MSDA-IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL 79 (286)
T ss_pred CCCC-ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH
Confidence 4444 3589999999999999999999999999999999987662 222210000 045677888
Q ss_pred HHHHhhcCCCcEEEEEcCCCchHHHHH-HHHHhcC-CCCcEEEecCCCCchhHHHHHHHHHHC--CCeEEe-CCCCCCHH
Q 010637 64 RDFVLSIQRPRSVIILVKAGSPVDQTI-AALSEHM-SPGDCIIDGGNEWYLNTERRIHEASQK--GLLYLG-MGVSGGEE 138 (505)
Q Consensus 64 ~e~v~~l~~advIil~vp~~~~v~~vl-~~l~~~l-~~g~iIId~st~~~~~t~~~~~~l~~~--gi~~i~-~pvsGg~~ 138 (505)
++ ++. +|+||.|+|++.+++..+ ..+...+ +++.++++.|++.+..........+++ |+||++ +|+++..+
T Consensus 80 ~~-~~~---~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvE 155 (286)
T PRK07819 80 GD-FAD---RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVE 155 (286)
T ss_pred HH-hCC---CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEE
Confidence 54 454 999999999999998887 4555555 789999999998887766655555555 889998 46666553
Q ss_pred HhhcCCccccCCCHHHHHHHHHHHH-HHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCH
Q 010637 139 GARHGPSLMPGGSFEAYNNIRDILQ-KVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN 217 (505)
Q Consensus 139 ~a~~G~~im~gg~~ea~~~v~~ll~-~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~ 217 (505)
- ....++++++++++.+++. .++ +.++.+++ ..|.. -|.+ ...+++|++.+++++. .++
T Consensus 156 l-----v~~~~T~~~~~~~~~~~~~~~lg------k~pv~v~d-~pGfi----~nRi---~~~~~~Ea~~ll~eGv-~~~ 215 (286)
T PRK07819 156 L-----VPTLVTSEATVARAEEFASDVLG------KQVVRAQD-RSGFV----VNAL---LVPYLLSAIRMVESGF-ATA 215 (286)
T ss_pred E-----eCCCCCCHHHHHHHHHHHHHhCC------CCceEecC-CCChH----HHHH---HHHHHHHHHHHHHhCC-CCH
Confidence 1 3446789999999999988 599 78888865 44554 4554 4556699999999877 889
Q ss_pred HHHHHHHH
Q 010637 218 AELAEIFD 225 (505)
Q Consensus 218 ~~i~~v~~ 225 (505)
++++.++.
T Consensus 216 ~dID~~~~ 223 (286)
T PRK07819 216 EDIDKAMV 223 (286)
T ss_pred HHHHHHHH
Confidence 99999974
No 39
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.78 E-value=6.7e-18 Score=181.71 Aligned_cols=189 Identities=14% Similarity=0.163 Sum_probs=146.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHH-----------HHhhcccC------CCCeeeeCCHHHHHh
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDET-----------LDRAHREG------QLPLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l-----------~~~~~~~g------~~~i~~~~s~~e~v~ 68 (505)
..+|||||+|.||.+||.+|+.+||+|++||++++++++. .+.+.-.. .-+++++.+++++.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~~- 85 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADLA- 85 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhC-
Confidence 4679999999999999999999999999999999988774 22221000 00467888887754
Q ss_pred hcCCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEE-ecCCCCchhHHHHHHHHH--H--CCCeEEe-CCCCCCHHHhh
Q 010637 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCII-DGGNEWYLNTERRIHEAS--Q--KGLLYLG-MGVSGGEEGAR 141 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iII-d~st~~~~~t~~~~~~l~--~--~gi~~i~-~pvsGg~~~a~ 141 (505)
. +|+||.|||++.++++.+ .++...++++.++. ++||..+. +++..+. + .|+||++ +|++.
T Consensus 86 ~---aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~Pa~v~~------ 153 (507)
T PRK08268 86 D---CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNPVPLMK------ 153 (507)
T ss_pred C---CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCCcccCe------
Confidence 4 999999999999999887 56667777888884 77777664 3444333 2 3899999 67772
Q ss_pred cCCccccC---CCHHHHHHHHHHHHHHhcccCCCCceEEeCC-CcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCH
Q 010637 142 HGPSLMPG---GSFEAYNNIRDILQKVAAQVDDGPCVTYIGE-GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN 217 (505)
Q Consensus 142 ~G~~im~g---g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~-~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~ 217 (505)
-..+++ +++++++.+.++++.++ +.++++++ +| ++.|.+.. ..++|++.++++.+ +++
T Consensus 154 --LvEvv~g~~Ts~~~~~~~~~l~~~lg------k~pv~v~d~pG------fi~Nrll~---~~~~Ea~~l~~~g~-~~~ 215 (507)
T PRK08268 154 --LVEVVSGLATDPAVADALYALARAWG------KTPVRAKDTPG------FIVNRAAR---PYYTEALRVLEEGV-ADP 215 (507)
T ss_pred --eEEEeCCCCCCHHHHHHHHHHHHHcC------CceEEecCCCC------hHHHHHHH---HHHHHHHHHHHcCC-CCH
Confidence 244454 59999999999999999 88999986 45 46676654 47799999999988 999
Q ss_pred HHHHHHHH
Q 010637 218 AELAEIFD 225 (505)
Q Consensus 218 ~~i~~v~~ 225 (505)
+++++++.
T Consensus 216 ~~iD~al~ 223 (507)
T PRK08268 216 ATIDAILR 223 (507)
T ss_pred HHHHHHHH
Confidence 99999985
No 40
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.78 E-value=1.2e-17 Score=167.36 Aligned_cols=185 Identities=14% Similarity=0.191 Sum_probs=132.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC----CcEEEEeCChH-HHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKG----FPISVYNRTTS-KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G----~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
|+|+|||+|.||.+|+.+|.++| ++|.+|||+++ +.+.+.... ++..+.++.++++. +|+||+|||
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~------g~~~~~~~~e~~~~---aDvVilav~ 74 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKY------GVKGTHNKKELLTD---ANILFLAMK 74 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhc------CceEeCCHHHHHhc---CCEEEEEeC
Confidence 58999999999999999999998 88999999864 566665532 25667888888776 999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEec-CCCCchhHHHHHHHHHHCCCeEEeCCCCCC---HHHhh-cCCccccCCC---HH
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDG-GNEWYLNTERRIHEASQKGLLYLGMGVSGG---EEGAR-HGPSLMPGGS---FE 153 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~-st~~~~~t~~~~~~l~~~gi~~i~~pvsGg---~~~a~-~G~~im~gg~---~e 153 (505)
+. .+.++++++.+.+.++.+||++ ++..+...++ .+ ..+ +||+++ ...+. .|.+++++++ ++
T Consensus 75 p~-~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~-~~~-----~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~ 144 (279)
T PRK07679 75 PK-DVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LL-QKD-----VPIIRAMPNTSAAILKSATAISPSKHATAE 144 (279)
T ss_pred HH-HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---Hc-CCC-----CeEEEECCCHHHHHhcccEEEeeCCCCCHH
Confidence 85 7888889998888889999997 5554433333 22 222 334443 23444 3447777765 66
Q ss_pred HHHHHHHHHHHHhcccCCCCceE------E--eCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010637 154 AYNNIRDILQKVAAQVDDGPCVT------Y--IGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (505)
Q Consensus 154 a~~~v~~ll~~iga~~~~~~~v~------~--vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~ 225 (505)
.++.++++|+.+| .++. + ++..|+|.. +.+..+..+.|+ +.+.| ++.++..+++.
T Consensus 145 ~~~~v~~l~~~~G------~~~~v~e~~~~~~~a~~Gsgpa-------~~~~~~eal~e~---~~~~G-l~~~~a~~~~~ 207 (279)
T PRK07679 145 HIQTAKALFETIG------LVSVVEEEDMHAVTALSGSGPA-------YIYYVVEAMEKA---AKKIG-LKEDVAKSLIL 207 (279)
T ss_pred HHHHHHHHHHhCC------cEEEeCHHHhhhHHHhhcCHHH-------HHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 8899999999999 5444 4 555566554 233344444444 67888 99999999986
Q ss_pred Hh
Q 010637 226 EW 227 (505)
Q Consensus 226 ~~ 227 (505)
+.
T Consensus 208 ~~ 209 (279)
T PRK07679 208 QT 209 (279)
T ss_pred HH
Confidence 43
No 41
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.77 E-value=1.7e-17 Score=166.85 Aligned_cols=206 Identities=19% Similarity=0.217 Sum_probs=165.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHh---------------hcccCCCCeeeeCCHHHHHhhc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR---------------AHREGQLPLTGHYTPRDFVLSI 70 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~---------------~~~~g~~~i~~~~s~~e~v~~l 70 (505)
.++|||||||.+|.++|..++++|++|.++|.++.+++.+... ....| +++.+++++++..
T Consensus 9 ~~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g--~lraTtd~~~l~~-- 84 (436)
T COG0677 9 SATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESG--KLRATTDPEELKE-- 84 (436)
T ss_pred ceEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcC--CceEecChhhccc--
Confidence 4689999999999999999999999999999999998776531 11112 4677777777653
Q ss_pred CCCcEEEEEcCCCc---------hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC--CCeE-EeCCCCCCHH
Q 010637 71 QRPRSVIILVKAGS---------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--GLLY-LGMGVSGGEE 138 (505)
Q Consensus 71 ~~advIil~vp~~~---------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~--gi~~-i~~pvsGg~~ 138 (505)
||++|+|||++- .+.+..+.+.+.|++|++||--||+.|.+|+++...+.+. |..| .|..+.-.|+
T Consensus 85 --~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPE 162 (436)
T COG0677 85 --CDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPE 162 (436)
T ss_pred --CCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCcc
Confidence 999999998752 4667778999999999999999999999999999877664 3433 1222222333
Q ss_pred HhhcCC---------ccccCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHH
Q 010637 139 GARHGP---------SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVL 209 (505)
Q Consensus 139 ~a~~G~---------~im~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~ 209 (505)
...-|. .++.|-+++..+.+..+++.+- ..+..+.+.-.+.++|+..|.+...++++++|..-++
T Consensus 163 Rv~PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv------~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~ 236 (436)
T COG0677 163 RVLPGNVLKELVNNPKVIGGVTPKCAELAAALYKTIV------EGVIPVTSARTAEMVKLTENTFRDVNIALANELALIC 236 (436)
T ss_pred ccCCCchhhhhhcCCceeecCCHHHHHHHHHHHHHhe------EEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 333332 3445557888889999999998 5677888889999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHH
Q 010637 210 KHVGGLSNAELAEIF 224 (505)
Q Consensus 210 ~~~g~l~~~~i~~v~ 224 (505)
.+.| ++..++.++.
T Consensus 237 ~~~G-IdvwevIeaA 250 (436)
T COG0677 237 NAMG-IDVWEVIEAA 250 (436)
T ss_pred HHhC-CcHHHHHHHh
Confidence 9999 9999888875
No 42
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.77 E-value=1.9e-17 Score=170.48 Aligned_cols=262 Identities=20% Similarity=0.183 Sum_probs=164.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhccc----CC------CCeeeeCCHHHHHhhcCCCc
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE----GQ------LPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~----g~------~~i~~~~s~~e~v~~l~~ad 74 (505)
|||+|+|||+|.||..+|..|+++||+|++|+|++. .+.+.+.+... +. .++....++ +.+. .+|
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~D 75 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALA---TAD 75 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhcc---CCC
Confidence 467999999999999999999999999999999754 45555433210 00 012233444 3333 499
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC--C---CCCCHHHhh---cCCcc
Q 010637 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM--G---VSGGEEGAR---HGPSL 146 (505)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~--p---vsGg~~~a~---~G~~i 146 (505)
+||++||+. .++++++.+.+.+.++.+|++++|+.. ..+.+.+.+.+. +++.+ + +++++..+. .|+ +
T Consensus 76 ~vil~vk~~-~~~~~~~~l~~~~~~~~iii~~~nG~~-~~~~l~~~~~~~--~~~~g~~~~~~~~~~pg~~~~~~~g~-l 150 (341)
T PRK08229 76 LVLVTVKSA-ATADAAAALAGHARPGAVVVSFQNGVR-NADVLRAALPGA--TVLAGMVPFNVISRGPGAFHQGTSGA-L 150 (341)
T ss_pred EEEEEecCc-chHHHHHHHHhhCCCCCEEEEeCCCCC-cHHHHHHhCCCC--cEEEEEEEEEEEecCCceEEecCCCc-e
Confidence 999999986 678889999999999999999988653 334455554432 23332 2 233332222 333 2
Q ss_pred ccCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhH--------------------hhHHHHHH
Q 010637 147 MPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGD--------------------MQLISEAY 206 (505)
Q Consensus 147 m~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~--------------------~~~i~Ea~ 206 (505)
..+ +.+.++++.++|+..+ ..+.+.++.+.+.+.|++.|.+.... ..++.|++
T Consensus 151 ~~~-~~~~~~~~~~~l~~~g------~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~ 223 (341)
T PRK08229 151 AIE-ASPALRPFAAAFARAG------LPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREAL 223 (341)
T ss_pred Eec-CCchHHHHHHHHHhcC------CCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHH
Confidence 222 3355788999999888 67889999999999999999643333 37899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHhccC--CcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCc-------hHHHHHHHHH
Q 010637 207 DVLKHVGGLSNAELAEIFDEWNKG--ELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKG-------TGKWTVQQAA 277 (505)
Q Consensus 207 ~l~~~~g~l~~~~i~~v~~~~~~g--~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kg-------tg~~~~~~A~ 277 (505)
.++++.| ++++.+.++..++... .+.+.+++.....+...+ +... ..+++|....- .| +.++.|+
T Consensus 224 ~va~a~G-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~Sm~~D~~~~r~tEi~~i~G-~i~~~a~ 297 (341)
T PRK08229 224 RVLKAAG-IRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAID-PLAR---SSMSDDLAAGRATEIDWING-EIVRLAG 297 (341)
T ss_pred HHHHHcC-CCccccCCCChhhhhhhhcCChHHHHHHHHHhhccC-CccC---chHHHHHHcCCcchHHHHhh-HHHHHHH
Confidence 9999998 9876543332211100 122333332222111111 1110 11222221000 12 6889999
Q ss_pred HcCCCcchHHHH
Q 010637 278 ELSVAAPTIAAS 289 (505)
Q Consensus 278 ~~gvp~p~i~~a 289 (505)
++|+|+|+....
T Consensus 298 ~~gv~~P~~~~~ 309 (341)
T PRK08229 298 RLGAPAPVNARL 309 (341)
T ss_pred HcCCCCcHHHHH
Confidence 999999998864
No 43
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.77 E-value=4.7e-18 Score=169.48 Aligned_cols=288 Identities=16% Similarity=0.195 Sum_probs=199.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCC-------CeeeeCCHHHHHhhcCCCcEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQL-------PLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~-------~i~~~~s~~e~v~~l~~advIil 78 (505)
+++|+|||.|.+|++||..|+++||+|.+|.|+++..+++.....+..++ ++..+++++++++. +|+|++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~---ad~iv~ 77 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDG---ADIIVI 77 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhc---CCEEEE
Confidence 36899999999999999999999999999999999998887653332111 46778899999887 999999
Q ss_pred EcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHH-HHHHC-C---CeEEeCCCCCCHHHhhcCC-c-cccCCC
Q 010637 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH-EASQK-G---LLYLGMGVSGGEEGARHGP-S-LMPGGS 151 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~-~l~~~-g---i~~i~~pvsGg~~~a~~G~-~-im~gg~ 151 (505)
+||. ..++++++++.+.+.++.+++.++.+....+.++.. .+++. + +-++..|-. ..+-++.-| . .+.+-|
T Consensus 78 avPs-~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~-A~EVa~g~pta~~vas~d 155 (329)
T COG0240 78 AVPS-QALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSF-AKEVAQGLPTAVVVASND 155 (329)
T ss_pred ECCh-HHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccH-HHHHhcCCCcEEEEecCC
Confidence 9999 589999999998999999999999987776555443 33332 3 233333322 244555555 4 445568
Q ss_pred HHHHHHHHHHHHHHh-----------cccCC-CCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHH
Q 010637 152 FEAYNNIRDILQKVA-----------AQVDD-GPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (505)
Q Consensus 152 ~ea~~~v~~ll~~ig-----------a~~~~-~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~ 219 (505)
++..++++.+|..=. .++.+ -|+|+-++. |....+.+-.|+-.+.+...++|+-.+....| -.++.
T Consensus 156 ~~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~-Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG-~~~~T 233 (329)
T COG0240 156 QEAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAA-GIADGLGLGDNAKAALITRGLAEMTRLGVALG-AKPET 233 (329)
T ss_pred HHHHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHH-HHHHHhhcChhHHHHHHHhHHHHHHHHHHHhC-CCcch
Confidence 888888988886511 11101 055555543 66666778889999999999999999999999 66775
Q ss_pred HHHHHHHhccCCcchhHHhhhhhhccccccC----CCchhHHHHHhhhCCCchHHHHH----HHHHHcCCCcchHHHHHH
Q 010637 220 LAEIFDEWNKGELESFLVEITADIFKVKDEY----GEGELVDKILDKTGMKGTGKWTV----QQAAELSVAAPTIAASLD 291 (505)
Q Consensus 220 i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~----~~~~~l~~i~~~~~~kgtg~~~~----~~A~~~gvp~p~i~~av~ 291 (505)
+... .|.++ |+-+......++..| ..+..++..+...+|.-+|..++ +.|+++|+++|++.+ |
T Consensus 234 ~~gL-----sGlGD--LilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~-V- 304 (329)
T COG0240 234 FMGL-----SGLGD--LILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEA-V- 304 (329)
T ss_pred hccc-----ccccc--eeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHH-H-
Confidence 5433 23333 211111211211111 23356677777788888886666 468899999998874 4
Q ss_pred HHHHhcchHHHHHHHHHh
Q 010637 292 CRYLSGLKEEREKAAKVL 309 (505)
Q Consensus 292 ~r~~s~~~~~r~~~~~~~ 309 (505)
.|.+-..++.+..+..++
T Consensus 305 y~vl~~~~~~~~~~~~L~ 322 (329)
T COG0240 305 YRVLYEGLDPKEAIEELM 322 (329)
T ss_pred HHHHhCCCCHHHHHHHHh
Confidence 555555555666665555
No 44
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.77 E-value=1.1e-16 Score=170.34 Aligned_cols=254 Identities=13% Similarity=0.087 Sum_probs=182.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChHHHHHHHHhhcc---cC---------CCCeeeeCCHHHHHhhcC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHR---EG---------QLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~~~~---~g---------~~~i~~~~s~~e~v~~l~ 71 (505)
||+|+|||+|.+|..+|..|+++ |++|.++|+++++++.+.+.... .| +.++..+++..+.+..
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~-- 78 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAE-- 78 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhc--
Confidence 47899999999999999999988 47899999999999887643211 00 0036677787777766
Q ss_pred CCcEEEEEcCCCc--------------hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC--C--CeEEeCCC
Q 010637 72 RPRSVIILVKAGS--------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--G--LLYLGMGV 133 (505)
Q Consensus 72 ~advIil~vp~~~--------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~--g--i~~i~~pv 133 (505)
+|++|+|||++. .++++++.+.+.++++++||.-||..+.+++++...+.+. | +++.-+|-
T Consensus 79 -advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PE 157 (473)
T PLN02353 79 -ADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPE 157 (473)
T ss_pred -CCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCC
Confidence 999999997543 5778889999999999999999999999999998877753 3 34445663
Q ss_pred CCCHHHhhc---CC-ccccCCC-----HHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHH
Q 010637 134 SGGEEGARH---GP-SLMPGGS-----FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISE 204 (505)
Q Consensus 134 sGg~~~a~~---G~-~im~gg~-----~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~E 204 (505)
.--+-.+.. -+ .+++||. +++.+.++.++..+.. ..++.+.+.-++.++|++.|.+.+..+++++|
T Consensus 158 rl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~-----~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NE 232 (473)
T PLN02353 158 FLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVP-----EERIITTNLWSAELSKLAANAFLAQRISSVNA 232 (473)
T ss_pred ccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhc-----CCCEEecCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322222221 22 5667874 3467888889888861 13455566789999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHhccCC--cchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCC
Q 010637 205 AYDVLKHVGGLSNAELAEIFDEWNKGE--LESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVA 282 (505)
Q Consensus 205 a~~l~~~~g~l~~~~i~~v~~~~~~g~--~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp 282 (505)
...++++.| +|..++.+.+ +... +..|+ .-.-.++++ -+-+|.. ..+..|.++|++
T Consensus 233 la~lce~~g-iD~~eV~~~~---~~d~rig~~~l--------~PG~G~GG~----ClpkD~~------~L~~~a~~~g~~ 290 (473)
T PLN02353 233 MSALCEATG-ADVSQVSHAV---GKDSRIGPKFL--------NASVGFGGS----CFQKDIL------NLVYICECNGLP 290 (473)
T ss_pred HHHHHHHhC-CCHHHHHHHh---CCCCcCCCCCC--------CCCCCCCCc----chhhhHH------HHHHHHHHcCCc
Confidence 999999998 9999998886 2221 11222 111113332 3334542 455778889988
Q ss_pred --cchHHHH
Q 010637 283 --APTIAAS 289 (505)
Q Consensus 283 --~p~i~~a 289 (505)
.+++.++
T Consensus 291 ~~~~l~~~~ 299 (473)
T PLN02353 291 EVAEYWKQV 299 (473)
T ss_pred hHHHHHHHH
Confidence 6666654
No 45
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.76 E-value=1.9e-16 Score=160.00 Aligned_cols=254 Identities=18% Similarity=0.177 Sum_probs=188.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHh---------------hcccCCCCeeeeCCHHHHHhhcC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR---------------AHREGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~---------------~~~~g~~~i~~~~s~~e~v~~l~ 71 (505)
|||+|||+|.+|...+..|++.||+|..+|.+++|++.+.+. +...| ++..+++.++.++.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~g--Rl~fTtd~~~a~~~-- 76 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASG--RLRFTTDYEEAVKD-- 76 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccC--cEEEEcCHHHHHhc--
Confidence 689999999999999999999999999999999998776542 11222 58889999998887
Q ss_pred CCcEEEEEcCCCc---------hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhc
Q 010637 72 RPRSVIILVKAGS---------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARH 142 (505)
Q Consensus 72 ~advIil~vp~~~---------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~ 142 (505)
+|++|++||++. .++++++.+.+.++...+||.-||+.+.++++..+.+.+....= +..|.-.|+--++
T Consensus 77 -adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLRE 154 (414)
T COG1004 77 -ADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLRE 154 (414)
T ss_pred -CCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcC
Confidence 999999998753 47788899999998889999999999999999888776542110 2233334455555
Q ss_pred C--------C-ccccCCCHH-HHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHh
Q 010637 143 G--------P-SLMPGGSFE-AYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHV 212 (505)
Q Consensus 143 G--------~-~im~gg~~e-a~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~ 212 (505)
| | .+++|...+ +.+.++++++.+..+ ...++++ ....+.++|+..|++.+.-+.+++|.-.++++.
T Consensus 155 G~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~---~~p~l~t-~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~ 230 (414)
T COG1004 155 GSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQ---DVPILFT-DLREAELIKYAANAFLATKISFINEIANICEKV 230 (414)
T ss_pred cchhhhccCCCeEEEccCChhHHHHHHHHHhhhhhc---CCCEEEe-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5 3 577887554 678888888776431 1234444 458899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHH
Q 010637 213 GGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASL 290 (505)
Q Consensus 213 g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av 290 (505)
| +|.+++.+.+. ++. +|....+...-.|++.. +-||.. ..+..|.++|.+.+++.+.+
T Consensus 231 g-~D~~~V~~gIG------lD~---RIG~~fl~aG~GyGGsC----fPKD~~------AL~~~a~~~~~~~~ll~avv 288 (414)
T COG1004 231 G-ADVKQVAEGIG------LDP---RIGNHFLNAGFGYGGSC----FPKDTK------ALIANAEELGYDPNLLEAVV 288 (414)
T ss_pred C-CCHHHHHHHcC------CCc---hhhHhhCCCCCCCCCcC----CcHhHH------HHHHHHHhcCCchHHHHHHH
Confidence 9 99999988862 111 11112222211244432 233332 46678999999988888653
No 46
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.75 E-value=2.8e-17 Score=176.47 Aligned_cols=192 Identities=16% Similarity=0.160 Sum_probs=142.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHh-------hcccCCC----------CeeeeCCHHHHHh
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-------AHREGQL----------PLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~-------~~~~g~~----------~i~~~~s~~e~v~ 68 (505)
..+|||||+|.||.+||.+|+++||+|++||++++++++..+. ....|.+ +++.+++++++.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~- 83 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA- 83 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC-
Confidence 3579999999999999999999999999999999988654211 0111100 467788887654
Q ss_pred hcCCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHH----HCCCeEEe-CCCCCCHHHhhc
Q 010637 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEAS----QKGLLYLG-MGVSGGEEGARH 142 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~----~~gi~~i~-~pvsGg~~~a~~ 142 (505)
+ +|+||.|||++.+++..+ .++.+.++++.||. ++|+....+ ++.+.+. ..|+||++ +|++.
T Consensus 84 ~---aDlVIEav~E~~~vK~~vf~~l~~~~~~~~Ila-snTStl~i~-~iA~~~~~p~r~~G~HFf~Papv~~------- 151 (503)
T TIGR02279 84 D---AGLVIEAIVENLEVKKALFAQLEELCPADTIIA-SNTSSLSIT-AIAAGLARPERVAGLHFFNPAPVMA------- 151 (503)
T ss_pred C---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEE-ECCCCCCHH-HHHHhcCcccceEEEeccCccccCc-------
Confidence 4 999999999999998886 55666666655554 333333333 3444443 34899999 67773
Q ss_pred CCccccCC---CHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHH
Q 010637 143 GPSLMPGG---SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (505)
Q Consensus 143 G~~im~gg---~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~ 219 (505)
-..+++| ++++++.+.++++.++ +.++++|+ ..|. +.|.+. ...++|++.++++.+ +++++
T Consensus 152 -LvEvv~g~~Ts~e~~~~~~~l~~~lg------k~pv~v~d-~pGf----i~Nrl~---~~~~~EA~~l~e~g~-a~~~~ 215 (503)
T TIGR02279 152 -LVEVVSGLATAAEVAEQLYETALAWG------KQPVHCHS-TPGF----IVNRVA---RPYYAEALRALEEQV-AAPAV 215 (503)
T ss_pred -eEEEeCCCCCCHHHHHHHHHHHHHcC------CeeeEeCC-CCCc----HHHHHH---HHHHHHHHHHHHcCC-CCHHH
Confidence 2556777 9999999999999999 88999986 2232 556665 357899999999988 99999
Q ss_pred HHHHHHH
Q 010637 220 LAEIFDE 226 (505)
Q Consensus 220 i~~v~~~ 226 (505)
++++++.
T Consensus 216 ID~al~~ 222 (503)
T TIGR02279 216 LDAALRD 222 (503)
T ss_pred HHHHHHh
Confidence 9999863
No 47
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.74 E-value=1.4e-16 Score=162.06 Aligned_cols=195 Identities=13% Similarity=0.131 Sum_probs=140.3
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHh-----hc---------ccCCCCeeeeCCHHHHHhh
Q 010637 4 SALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-----AH---------REGQLPLTGHYTPRDFVLS 69 (505)
Q Consensus 4 ~~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~-----~~---------~~g~~~i~~~~s~~e~v~~ 69 (505)
+.+++|+|||+|.||.+||..|+++|++|++||+++++++.+.+. +. ..+ ++..+++++++++.
T Consensus 2 ~~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~ 79 (311)
T PRK06130 2 NPIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMG--RIRMEAGLAAAVSG 79 (311)
T ss_pred CCccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhh--ceEEeCCHHHHhcc
Confidence 345689999999999999999999999999999999988776642 10 000 24566778777766
Q ss_pred cCCCcEEEEEcCCCch-HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC----CCeEEeCCCCCCHHHhhcCC
Q 010637 70 IQRPRSVIILVKAGSP-VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP 144 (505)
Q Consensus 70 l~~advIil~vp~~~~-v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsGg~~~a~~G~ 144 (505)
+|+||+|||+... ...++.++.+.++++.+|+..+++.+ ..++.+.+... ++||.++|..+. ..
T Consensus 80 ---aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~--~~~l~~~~~~~~~~ig~h~~~p~~~~~------l~ 148 (311)
T PRK06130 80 ---ADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLP--ITAIAQAVTRPERFVGTHFFTPADVIP------LV 148 (311)
T ss_pred ---CCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCC--HHHHHhhcCCcccEEEEccCCCCccCc------eE
Confidence 9999999999754 45667788777766666654444433 33555555321 445544442211 11
Q ss_pred ccccCC--CHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHH
Q 010637 145 SLMPGG--SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (505)
Q Consensus 145 ~im~gg--~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~ 222 (505)
.+++|. ++++++.++++|+.+| ++++++++...|. +++|. ...+++|++.++++.+ ++++++++
T Consensus 149 ~i~~g~~t~~~~~~~v~~l~~~~G------~~~v~~~~d~~G~---i~nr~----~~~~~~Ea~~l~~~g~-~~~~~id~ 214 (311)
T PRK06130 149 EVVRGDKTSPQTVATTMALLRSIG------KRPVLVKKDIPGF---IANRI----QHALAREAISLLEKGV-ASAEDIDE 214 (311)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcC------CEEEEEcCCCCCc---HHHHH----HHHHHHHHHHHHHcCC-CCHHHHHH
Confidence 344443 7899999999999999 7889998766666 55555 3467899999999988 99999999
Q ss_pred HHH
Q 010637 223 IFD 225 (505)
Q Consensus 223 v~~ 225 (505)
++.
T Consensus 215 ~~~ 217 (311)
T PRK06130 215 VVK 217 (311)
T ss_pred HHH
Confidence 974
No 48
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.74 E-value=4e-17 Score=163.43 Aligned_cols=175 Identities=16% Similarity=0.228 Sum_probs=133.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|+|||+|.||.+||..|.++|++|.+||++++..+.+.+.+. +....+..+.+.. +|+||+|+|.. .+
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~------~~~~~~~~~~~~~---aDlVilavp~~-~~ 70 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGL------VDEASTDLSLLKD---CDLVILALPIG-LL 70 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC------cccccCCHhHhcC---CCEEEEcCCHH-HH
Confidence 47999999999999999999999999999999998888776542 2222233344554 99999999985 67
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe-CCCCCCH-HHhhcCC-cccc----------CCCHH
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGE-EGARHGP-SLMP----------GGSFE 153 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsGg~-~~a~~G~-~im~----------gg~~e 153 (505)
.++++++.+.+.++.+|+|+++......... .+....|++ .|+.|++ .+...+. .++. +++++
T Consensus 71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~----~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~ 146 (279)
T PRK07417 71 LPPSEQLIPALPPEAIVTDVGSVKAPIVEAW----EKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLN 146 (279)
T ss_pred HHHHHHHHHhCCCCcEEEeCcchHHHHHHHH----HHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHH
Confidence 7888999999999999999998765443332 223335887 5888876 4444333 2222 35889
Q ss_pred HHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhH
Q 010637 154 AYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQL 201 (505)
Q Consensus 154 a~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~ 201 (505)
.++.++++++.+| .+++++++.+....+++++|...+....+
T Consensus 147 ~~~~v~~l~~~lG------~~~v~~~~~~hD~~~a~~shlp~~~a~~l 188 (279)
T PRK07417 147 ALAIVEELAVSLG------SKIYTADPEEHDRAVALISHLPVMVSAAL 188 (279)
T ss_pred HHHHHHHHHHHcC------CEEEEcCHHHHHHHHHHHcchHHHHHHHH
Confidence 9999999999999 78899999999999999988876655433
No 49
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.73 E-value=1.5e-16 Score=161.28 Aligned_cols=195 Identities=12% Similarity=0.074 Sum_probs=142.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhh-------ccc----CC--CCeeeeCCHHHHHhhcCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HRE----GQ--LPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~-------~~~----g~--~~i~~~~s~~e~v~~l~~ 72 (505)
..+|||||+|.||.+||.+|+.+|++|.+||++++..+.+.+.. ... +. .+++.+++++++++.
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~--- 83 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVAD--- 83 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcC---
Confidence 35799999999999999999999999999999998765543210 000 00 046777888888776
Q ss_pred CcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC----CCeEEeCCCCCCHHHhhcCCccc
Q 010637 73 PRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGPSLM 147 (505)
Q Consensus 73 advIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsGg~~~a~~G~~im 147 (505)
+|+|+.+||+...++..+ .++.+.++++. ||.++|+.. ...++.+.+... |.||+.+|-.-.-. -++
T Consensus 84 aDlViEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l-~~s~la~~~~~p~R~~g~HffnP~~~~pLV------EVv 155 (321)
T PRK07066 84 ADFIQESAPEREALKLELHERISRAAKPDA-IIASSTSGL-LPTDFYARATHPERCVVGHPFNPVYLLPLV------EVL 155 (321)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCcc-CHHHHHHhcCCcccEEEEecCCccccCceE------EEe
Confidence 999999999998888777 67878887776 666666643 444555555422 56777654211100 233
Q ss_pred cC--CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010637 148 PG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (505)
Q Consensus 148 ~g--g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~ 225 (505)
+| .++++++.+..+++.+| +.++.+..+-.|+. -|.+.+. ++.|++.++.++. .++++|+.+++
T Consensus 156 ~g~~T~~e~~~~~~~f~~~lG------k~pV~v~kd~pGFi----~NRl~~a---~~~EA~~lv~eGv-as~edID~a~~ 221 (321)
T PRK07066 156 GGERTAPEAVDAAMGIYRALG------MRPLHVRKEVPGFI----ADRLLEA---LWREALHLVNEGV-ATTGEIDDAIR 221 (321)
T ss_pred CCCCCCHHHHHHHHHHHHHcC------CEeEecCCCCccHH----HHHHHHH---HHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 33 48899999999999999 78888865555654 4666544 5599999999987 99999999974
No 50
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.72 E-value=1.9e-16 Score=158.18 Aligned_cols=190 Identities=13% Similarity=0.189 Sum_probs=140.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
|+|+|||+|.||.+||.+|.++|+ +|++|||++++.+.+.+.+. +..+.+++++. . +|+||+|||+.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~------~~~~~~~~~~~-~---aD~Vilavp~~- 69 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGL------VDEIVSFEELK-K---CDVIFLAIPVD- 69 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCC------CcccCCHHHHh-c---CCEEEEeCcHH-
Confidence 479999999999999999999996 78999999998887765432 12345676654 3 99999999996
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC-CCCCC----HHHhh----cCC-ccccC---CC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGG----EEGAR----HGP-SLMPG---GS 151 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsGg----~~~a~----~G~-~im~g---g~ 151 (505)
.+.+++.++.+ +.++.+|+|++++.....+...+. .+..|+++ |++|+ +..+. .|. .++++ ++
T Consensus 70 ~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~---~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~ 145 (275)
T PRK08507 70 AIIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH---IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSG 145 (275)
T ss_pred HHHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh---cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCC
Confidence 67788899999 889999999988765444333222 23568887 99875 44432 455 44553 56
Q ss_pred HHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHH
Q 010637 152 FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223 (505)
Q Consensus 152 ~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v 223 (505)
++.++.++++|+.+| ..++++++.+....++++++.-. ....+++++.. .+ .+.+++.++
T Consensus 146 ~~~~~~v~~l~~~~G------~~~~~~~~~~hD~~~a~vs~lph-~~a~~l~~~~~----~~-~~~~~~~~~ 205 (275)
T PRK08507 146 EKHQERAKEIFSGLG------MRIVYMDAKEHDLHAAYISHLPH-IISFALANTVL----KE-EDERNIFDL 205 (275)
T ss_pred HHHHHHHHHHHHHhC------CEEEEeCHHHHHHHHHHHhHHHH-HHHHHHHHHHH----hc-CChHHHHhh
Confidence 788999999999999 78999999999999999988853 44445555541 24 566555444
No 51
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.72 E-value=2.3e-16 Score=158.97 Aligned_cols=193 Identities=16% Similarity=0.199 Sum_probs=137.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhc-------ccCC----------CCeeeeCCHHHHHh
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-------REGQ----------LPLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~----------~~i~~~~s~~e~v~ 68 (505)
.++|+|||+|.||.+||.+|+.+|++|.+||+++++++.+.+... ..|. .+++.++++++ ++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 82 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED-LA 82 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH-hc
Confidence 468999999999999999999999999999999998776442100 0000 03566777754 44
Q ss_pred hcCCCcEEEEEcCCCchHHH-HHHHHHhcCCCCcEEE-ecCCCCchhHHHHHHHHHH----CCCeEEe-CCCCCCHHHhh
Q 010637 69 SIQRPRSVIILVKAGSPVDQ-TIAALSEHMSPGDCII-DGGNEWYLNTERRIHEASQ----KGLLYLG-MGVSGGEEGAR 141 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~-vl~~l~~~l~~g~iII-d~st~~~~~t~~~~~~l~~----~gi~~i~-~pvsGg~~~a~ 141 (505)
. +|+||+|||+..+++. ++.++.+.++++.+|+ ++|+..+ + ++++.+.. .|+||++ +|++++.+-
T Consensus 83 ~---aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--s-~la~~~~~~~r~~g~h~~~p~~~~~~vei-- 154 (292)
T PRK07530 83 D---CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI--T-RLASATDRPERFIGIHFMNPVPVMKLVEL-- 154 (292)
T ss_pred C---CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH--H-HHHhhcCCcccEEEeeccCCcccCceEEE--
Confidence 4 9999999999866654 4578888898999888 4444332 2 45554431 2788888 455543321
Q ss_pred cCCccccCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHH
Q 010637 142 HGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELA 221 (505)
Q Consensus 142 ~G~~im~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~ 221 (505)
....+++++.++.+.++|+.+| +.++++++.+ |. ++ |.+ ...++.|++.++.++- .++++++
T Consensus 155 ---~~g~~t~~~~~~~~~~~~~~~g------k~~v~~~d~p-g~---i~-nRl---~~~~~~ea~~~~~~g~-~~~~~iD 216 (292)
T PRK07530 155 ---IRGIATDEATFEAAKEFVTKLG------KTITVAEDFP-AF---IV-NRI---LLPMINEAIYTLYEGV-GSVEAID 216 (292)
T ss_pred ---eCCCCCCHHHHHHHHHHHHHcC------CeEEEecCcC-Ch---HH-HHH---HHHHHHHHHHHHHhCC-CCHHHHH
Confidence 1224689999999999999999 7888887633 33 33 333 3455699999999866 6899999
Q ss_pred HHHH
Q 010637 222 EIFD 225 (505)
Q Consensus 222 ~v~~ 225 (505)
.++.
T Consensus 217 ~~~~ 220 (292)
T PRK07530 217 TAMK 220 (292)
T ss_pred HHHH
Confidence 9863
No 52
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.72 E-value=1.9e-16 Score=159.78 Aligned_cols=190 Identities=12% Similarity=0.184 Sum_probs=136.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHH-----------HHhhc--------ccCCCCeeeeCCHHHH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDET-----------LDRAH--------REGQLPLTGHYTPRDF 66 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l-----------~~~~~--------~~g~~~i~~~~s~~e~ 66 (505)
+++|||||+|.||.+||.+|+.+|++|.+||+++++++.. .+.+. ..+ .+...++. +.
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~-~~ 80 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLG--RIRCTTNL-EE 80 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHh--ceEeeCCH-HH
Confidence 4689999999999999999999999999999999887542 22110 000 23444455 44
Q ss_pred HhhcCCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEE-ecCCCCchhHHHHHHHHH----HCCCeEEeCCCCCCHHHh
Q 010637 67 VLSIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCII-DGGNEWYLNTERRIHEAS----QKGLLYLGMGVSGGEEGA 140 (505)
Q Consensus 67 v~~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iII-d~st~~~~~t~~~~~~l~----~~gi~~i~~pvsGg~~~a 140 (505)
++. +|+||+|||++.+++..+ .++.+.++++.+|+ ++|+..+.. +.+.+. -.|+||+++|..+..
T Consensus 81 ~~~---aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~---l~~~~~~~~r~~g~h~~~pp~~~~l--- 151 (295)
T PLN02545 81 LRD---ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITR---LASATQRPQQVIGMHFMNPPPIMKL--- 151 (295)
T ss_pred hCC---CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH---HHhhcCCCcceEEEeccCCcccCce---
Confidence 555 999999999888877665 67888888888887 566664433 333332 237888888875422
Q ss_pred hcCCcccc--CCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHH
Q 010637 141 RHGPSLMP--GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNA 218 (505)
Q Consensus 141 ~~G~~im~--gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~ 218 (505)
..++. ++++++++.++++|+.+| ++++++++ ..|. +.|.+.. .+++|++.++.+.. .+++
T Consensus 152 ---veiv~g~~t~~e~~~~~~~ll~~lG------~~~~~~~d-~~g~----i~nri~~---~~~~ea~~~~~~gv-~~~~ 213 (295)
T PLN02545 152 ---VEIIRGADTSDEVFDATKALAERFG------KTVVCSQD-YPGF----IVNRILM---PMINEAFYALYTGV-ASKE 213 (295)
T ss_pred ---EEEeCCCCCCHHHHHHHHHHHHHcC------CeeEEecC-cccH----HHHHHHH---HHHHHHHHHHHcCC-CCHH
Confidence 12333 468999999999999999 78888876 3343 4555544 45699999999987 8999
Q ss_pred HHHHHHH
Q 010637 219 ELAEIFD 225 (505)
Q Consensus 219 ~i~~v~~ 225 (505)
+++.++.
T Consensus 214 ~iD~~~~ 220 (295)
T PLN02545 214 DIDTGMK 220 (295)
T ss_pred HHHHHHH
Confidence 9998863
No 53
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.69 E-value=8.4e-16 Score=154.87 Aligned_cols=193 Identities=15% Similarity=0.186 Sum_probs=139.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhh----------cccCC----------CCeeeeCCHHHH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA----------HREGQ----------LPLTGHYTPRDF 66 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~----------~~~g~----------~~i~~~~s~~e~ 66 (505)
.+|+|||+|.||.+||..|+.+|++|++||++++.++...+.. ...|. .++...++. +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 5799999999999999999999999999999999876533210 00000 023444555 34
Q ss_pred HhhcCCCcEEEEEcCCCchHH-HHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC----CCeEEe-CCCCCCHHHh
Q 010637 67 VLSIQRPRSVIILVKAGSPVD-QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLG-MGVSGGEEGA 140 (505)
Q Consensus 67 v~~l~~advIil~vp~~~~v~-~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~-~pvsGg~~~a 140 (505)
++. +|+||+++|+...++ .++.++.+.++++.+|+..+++. ...++++.+... |+||+. ++++++.+ +
T Consensus 83 ~~~---aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~ig~hf~~P~~~~~~vE-v 156 (291)
T PRK06035 83 LSD---ADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGI--MIAEIATALERKDRFIGMHWFNPAPVMKLIE-V 156 (291)
T ss_pred hCC---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccEEEEecCCCcccCccEE-E
Confidence 444 999999999976544 45578888888888887665554 344555555432 788888 56776654 2
Q ss_pred hcCCccccCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHH
Q 010637 141 RHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (505)
Q Consensus 141 ~~G~~im~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i 220 (505)
..|+ ..++++++.+.++++.+| +.++++++.+.....|+++| +++|++.+++++. .++++|
T Consensus 157 ~~g~----~T~~e~~~~~~~~~~~lg------k~~v~v~d~pgfv~nRl~~~--------~~~ea~~~~~~g~-a~~~~i 217 (291)
T PRK06035 157 VRAA----LTSEETFNTTVELSKKIG------KIPIEVADVPGFFTTRFIEG--------WLLEAIRSFEIGI-ATIKDI 217 (291)
T ss_pred eCCC----CCCHHHHHHHHHHHHHcC------CeEEEeCCCCCeeHHHHHHH--------HHHHHHHHHHcCC-CCHHHH
Confidence 3443 138999999999999999 88999987555555555543 4589999998866 799999
Q ss_pred HHHHH
Q 010637 221 AEIFD 225 (505)
Q Consensus 221 ~~v~~ 225 (505)
+.++.
T Consensus 218 D~~~~ 222 (291)
T PRK06035 218 DEMCK 222 (291)
T ss_pred HHHHh
Confidence 99874
No 54
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.69 E-value=3.3e-15 Score=150.20 Aligned_cols=197 Identities=13% Similarity=0.220 Sum_probs=139.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhh-------cccCC-----------CCeeeeCCHHHHH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HREGQ-----------LPLTGHYTPRDFV 67 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~-----------~~i~~~~s~~e~v 67 (505)
+++|+|||+|.||.++|..|+.+|++|++||++++.+++..+.. ...+. .+++.++++++++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 35899999999999999999999999999999998776654320 00000 0466788888877
Q ss_pred hhcCCCcEEEEEcCCCchH-HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC--
Q 010637 68 LSIQRPRSVIILVKAGSPV-DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-- 144 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~v-~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-- 144 (505)
+. +|+||+|+|+..++ ..++.++.+.++++.+|++.+++.+. .++.+.+. +.-+|+++..+..+ ...+
T Consensus 83 ~~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~--~~~~~~~~-~~~r~vg~Hf~~p~---~~~~lv 153 (287)
T PRK08293 83 KD---ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLP--SQFAEATG-RPEKFLALHFANEI---WKNNTA 153 (287)
T ss_pred cC---CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCH--HHHHhhcC-CcccEEEEcCCCCC---CcCCeE
Confidence 76 99999999987544 55568888888888888665555433 23333332 22345554332221 1223
Q ss_pred ccc--cCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHH
Q 010637 145 SLM--PGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (505)
Q Consensus 145 ~im--~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~ 222 (505)
-++ .+.++++++.+.++++.+| +.++.+.++..|..+ |.+ ...+++|++.+++++. .++++|+.
T Consensus 154 evv~~~~t~~~~~~~~~~~~~~~G------k~pv~v~~d~pgfi~----nRi---~~~~~~ea~~l~~~g~-a~~~~iD~ 219 (287)
T PRK08293 154 EIMGHPGTDPEVFDTVVAFAKAIG------MVPIVLKKEQPGYIL----NSL---LVPFLSAALALWAKGV-ADPETIDK 219 (287)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcC------CeEEEecCCCCCHhH----HHH---HHHHHHHHHHHHHcCC-CCHHHHHH
Confidence 334 3578999999999999999 778888766666655 444 4456699999999877 89999999
Q ss_pred HHH
Q 010637 223 IFD 225 (505)
Q Consensus 223 v~~ 225 (505)
++.
T Consensus 220 a~~ 222 (287)
T PRK08293 220 TWM 222 (287)
T ss_pred HHH
Confidence 863
No 55
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.67 E-value=6.2e-15 Score=151.71 Aligned_cols=290 Identities=14% Similarity=0.105 Sum_probs=187.8
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccC----CC----CeeeeCCHHHHHhhcCCCcEE
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREG----QL----PLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g----~~----~i~~~~s~~e~v~~l~~advI 76 (505)
.+|||+|||+|.||..+|..|+++| +|.+|.|+++..+.+.+.+.+.. +. ++...+++++.++. +|+|
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~---aDlV 81 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANC---ADVV 81 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhc---CCEE
Confidence 3579999999999999999999999 68999999999888876532110 00 34566777777666 9999
Q ss_pred EEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHH-HHHHHH----CCCeEEeCCCCCCHHHhhcCC--cc-cc
Q 010637 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERR-IHEASQ----KGLLYLGMGVSGGEEGARHGP--SL-MP 148 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~-~~~l~~----~gi~~i~~pvsGg~~~a~~G~--~i-m~ 148 (505)
|++||+. .++++++++.+.+.++.++|.++++....+..+ .+.+.+ ..+..+..|-.- .+. ..|. .+ +.
T Consensus 82 ilavps~-~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a-~ev-~~g~~t~~via 158 (341)
T PRK12439 82 VMGVPSH-GFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIA-REV-AEGYAAAAVLA 158 (341)
T ss_pred EEEeCHH-HHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHH-HHH-HcCCCeEEEEE
Confidence 9999984 799999999999988888999998876542222 122222 112223333111 111 2243 23 33
Q ss_pred CCCHHHHHHHHHHHHHHhccc---CCC---------CceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCC
Q 010637 149 GGSFEAYNNIRDILQKVAAQV---DDG---------PCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLS 216 (505)
Q Consensus 149 gg~~ea~~~v~~ll~~iga~~---~~~---------~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~ 216 (505)
+.+++..+.++.+|+.-+-+. ++- ++++.++ .|...-+.+..|.....+...+.|+..+++..| .+
T Consensus 159 ~~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia-~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G-~~ 236 (341)
T PRK12439 159 MPDQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIA-VGMGYSLGIGENTRAMVIARALREMTKLGVAMG-GN 236 (341)
T ss_pred eCCHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHH-HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhC-CC
Confidence 446677788888886544211 000 3333332 233334455667776778899999999999998 78
Q ss_pred HHHHHHHHHHhccCCcchhHHhhhhhhccccc----cCCCchhHHHHHhhhCCCchHHHHH----HHHHHcCCCcchHHH
Q 010637 217 NAELAEIFDEWNKGELESFLVEITADIFKVKD----EYGEGELVDKILDKTGMKGTGKWTV----QQAAELSVAAPTIAA 288 (505)
Q Consensus 217 ~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~----~~~~~~~l~~i~~~~~~kgtg~~~~----~~A~~~gvp~p~i~~ 288 (505)
++.+... .|.++-.+ .......++. .+..+..++.+.+.+++.-+|..++ +.++++++.+|++.+
T Consensus 237 ~~t~~gl-----~G~GDl~~--Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~ 309 (341)
T PRK12439 237 PETFAGL-----AGMGDLIV--TCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIARE 309 (341)
T ss_pred ccccccc-----chhhhhhh--hccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHH
Confidence 7776543 22222111 1111111111 1223456777777788888886665 568899999999985
Q ss_pred HHHHHHHhcchHHHHHHHHHhccC
Q 010637 289 SLDCRYLSGLKEEREKAAKVLKEA 312 (505)
Q Consensus 289 av~~r~~s~~~~~r~~~~~~~~~~ 312 (505)
..+.+...++.+..++.++..+
T Consensus 310 --~~~il~~~~~~~~~~~~l~~~~ 331 (341)
T PRK12439 310 --VDAVINHGSTVEQAYRGLIAEV 331 (341)
T ss_pred --HHHHHhCCCCHHHHHHHHhcCC
Confidence 3677777788888888887543
No 56
>PRK07680 late competence protein ComER; Validated
Probab=99.67 E-value=2e-14 Score=143.54 Aligned_cols=196 Identities=17% Similarity=0.161 Sum_probs=136.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF----PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~----~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+|+|||+|.||..|+..|.++|+ +|.+|+|++++.+.+.+... ++....++.+++.. +|+||+++|+
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~-----g~~~~~~~~~~~~~---aDiVilav~p 72 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYP-----GIHVAKTIEEVISQ---SDLIFICVKP 72 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcC-----CeEEECCHHHHHHh---CCEEEEecCH
Confidence 479999999999999999999994 79999999998877765321 25667888888776 9999999987
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccC--CCHHHHHHHH
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPG--GSFEAYNNIR 159 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~g--g~~ea~~~v~ 159 (505)
. .+.++++++.+.+.++++||+++++. ....+...+..+.++++.. .+..+..|. .++.| .+++.++.++
T Consensus 73 ~-~~~~vl~~l~~~l~~~~~iis~~ag~--~~~~L~~~~~~~~~r~~p~----~~~~~~~G~t~~~~g~~~~~~~~~~~~ 145 (273)
T PRK07680 73 L-DIYPLLQKLAPHLTDEHCLVSITSPI--SVEQLETLVPCQVARIIPS----ITNRALSGASLFTFGSRCSEEDQQKLE 145 (273)
T ss_pred H-HHHHHHHHHHhhcCCCCEEEEECCCC--CHHHHHHHcCCCEEEECCC----hHHHHhhccEEEeeCCCCCHHHHHHHH
Confidence 4 78999999999998899999999875 3445555544333444432 334556777 44555 4667889999
Q ss_pred HHHHHHhcccCCCCceEEeCCCcchhhhhhHh--hhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 010637 160 DILQKVAAQVDDGPCVTYIGEGGSGNFVKMVH--NGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEW 227 (505)
Q Consensus 160 ~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~--N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~ 227 (505)
++|+.+| .++++.+.-.-...-+.+ -++.+..+..+.++. .++.| ++.++..+++.+.
T Consensus 146 ~ll~~~G-------~~~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~G-l~~~~a~~~~~~~ 205 (273)
T PRK07680 146 RLFSNIS-------TPLVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETN-ISKEEATTLASEM 205 (273)
T ss_pred HHHHcCC-------CEEEEChHhcchhhhhccchHHHHHHHHHHHHHHH--HHhcC-CCHHHHHHHHHHH
Confidence 9999999 345554421000011111 123344444444442 24467 9999998887543
No 57
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.67 E-value=3e-15 Score=150.19 Aligned_cols=193 Identities=18% Similarity=0.233 Sum_probs=136.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHH-----------HHHhhcccC------CCCeeeeCCHHHHHhh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDE-----------TLDRAHREG------QLPLTGHYTPRDFVLS 69 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~-----------l~~~~~~~g------~~~i~~~~s~~e~v~~ 69 (505)
++|+|||+|.||.++|..|+.+|++|.+||+++++++. +.+.+.... ..++..+++.++ ++.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hcc
Confidence 57999999999999999999999999999999998753 222221000 003555667654 444
Q ss_pred cCCCcEEEEEcCCCchHH-HHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHH----CCCeEEe-CCCCCCHHHhhcC
Q 010637 70 IQRPRSVIILVKAGSPVD-QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLG-MGVSGGEEGARHG 143 (505)
Q Consensus 70 l~~advIil~vp~~~~v~-~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~----~gi~~i~-~pvsGg~~~a~~G 143 (505)
+|+||+|+|+...++ +++.++.+.++++.+|+..+++.+. ..+.+.+.. .++||.. +++..+.+ ...|
T Consensus 83 ---aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~--~~la~~~~~~~r~ig~h~~~P~~~~~~ve-v~~g 156 (282)
T PRK05808 83 ---ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSI--TELAAATKRPDKVIGMHFFNPVPVMKLVE-IIRG 156 (282)
T ss_pred ---CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH--HHHHHhhCCCcceEEeeccCCcccCccEE-EeCC
Confidence 999999999876665 6778899989888888554444332 255555532 2556666 34444433 1111
Q ss_pred CccccCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHH
Q 010637 144 PSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223 (505)
Q Consensus 144 ~~im~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v 223 (505)
.+++++.++.+.++|+.+| +.++++++ ..|. +.|.+. ..+++|+..+++++. .++++++.+
T Consensus 157 ----~~t~~e~~~~~~~l~~~lG------k~pv~~~d-~~g~----i~~Ri~---~~~~~ea~~~~~~gv-~~~~diD~~ 217 (282)
T PRK05808 157 ----LATSDATHEAVEALAKKIG------KTPVEVKN-APGF----VVNRIL---IPMINEAIFVLAEGV-ATAEDIDEG 217 (282)
T ss_pred ----CCCCHHHHHHHHHHHHHcC------CeeEEecC-ccCh----HHHHHH---HHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 4568999999999999999 88999864 5554 445554 455599999999877 889999998
Q ss_pred HH
Q 010637 224 FD 225 (505)
Q Consensus 224 ~~ 225 (505)
+.
T Consensus 218 ~~ 219 (282)
T PRK05808 218 MK 219 (282)
T ss_pred HH
Confidence 73
No 58
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.67 E-value=1.2e-15 Score=157.17 Aligned_cols=288 Identities=9% Similarity=-0.020 Sum_probs=189.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-------CcEEEEeCChH-----HHHHHHHhhcccCCC-------CeeeeCCHHHH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG-------FPISVYNRTTS-----KVDETLDRAHREGQL-------PLTGHYTPRDF 66 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G-------~~V~v~dr~~~-----~~~~l~~~~~~~g~~-------~i~~~~s~~e~ 66 (505)
.++|+|||.|.||++||..|+++| |+|.+|.|+++ .++.+.+.+.+..++ ++..+++++++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 368999999999999999999998 89999999986 356665543321111 56778888888
Q ss_pred HhhcCCCcEEEEEcCCCchHHHHHHHHHh--cCCCCcEEEecCCCCchhHH---HHHHHHHH---CCCeEEeCCCCCCHH
Q 010637 67 VLSIQRPRSVIILVKAGSPVDQTIAALSE--HMSPGDCIIDGGNEWYLNTE---RRIHEASQ---KGLLYLGMGVSGGEE 138 (505)
Q Consensus 67 v~~l~~advIil~vp~~~~v~~vl~~l~~--~l~~g~iIId~st~~~~~t~---~~~~~l~~---~gi~~i~~pvsGg~~ 138 (505)
++. +|+||++||+ ..++++++++.+ .+.++.+||.++.+...++. ...+.+++ ..+.++..|-. ..+
T Consensus 91 v~~---aDiIvlAVPs-q~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~LsGPs~-A~E 165 (365)
T PTZ00345 91 VED---ADLLIFVIPH-QFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALSGANV-AND 165 (365)
T ss_pred Hhc---CCEEEEEcCh-HHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEECCCH-HHH
Confidence 887 9999999999 589999999998 78777789988877654432 22333332 22333333322 234
Q ss_pred HhhcCC--ccccCCCHHHHHHHHHHHHHHhcc-----------cCC-CCceEEeCCCcchhhhhhHhhhHHHhHhhHHHH
Q 010637 139 GARHGP--SLMPGGSFEAYNNIRDILQKVAAQ-----------VDD-GPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISE 204 (505)
Q Consensus 139 ~a~~G~--~im~gg~~ea~~~v~~ll~~iga~-----------~~~-~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~E 204 (505)
-++.-| ..+++-+.+..+.++.+|..=--+ +.+ -|+++-++. |....+++-.|.-.+.+...++|
T Consensus 166 va~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~-Gi~dGl~~G~N~kaalitrgl~E 244 (365)
T PTZ00345 166 VAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAA-GFCDGLGLGTNTKSAIIRIGLEE 244 (365)
T ss_pred HHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHH-HHHHhcCCChhHHHHHHHHHHHH
Confidence 444555 445566888888888888532111 100 044444432 44445567789999999999999
Q ss_pred HHHHHHHhCC-CCHHHHHHHHHHhccCCcchhHHhhhhhhccccccC----C---CchhHHHHHhhh--CCCchHHHHH-
Q 010637 205 AYDVLKHVGG-LSNAELAEIFDEWNKGELESFLVEITADIFKVKDEY----G---EGELVDKILDKT--GMKGTGKWTV- 273 (505)
Q Consensus 205 a~~l~~~~g~-l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~----~---~~~~l~~i~~~~--~~kgtg~~~~- 273 (505)
+..+++..|+ .+++.+... .|.++-.+ +... .++..| . ++..++.+.+.+ +|+-+|..++
T Consensus 245 m~~l~~a~g~~~~~~T~~gl-----aG~GDLi~--Tc~s--SRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~ 315 (365)
T PTZ00345 245 MKLFGKIFFPNVMDETFFES-----CGLADLIT--TCLG--GRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLK 315 (365)
T ss_pred HHHHHHHhCCCCCccchhcc-----chHhHhhh--cccC--CCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHH
Confidence 9999999972 477766543 22222111 1111 111111 1 113566777766 7888887777
Q ss_pred ---HHHHHcCC--CcchHHHHHHHHHHhcchHHHHHHHHHhc
Q 010637 274 ---QQAAELSV--AAPTIAASLDCRYLSGLKEEREKAAKVLK 310 (505)
Q Consensus 274 ---~~A~~~gv--p~p~i~~av~~r~~s~~~~~r~~~~~~~~ 310 (505)
+.++++++ ++|++.+ + .|.+...++....+..++.
T Consensus 316 ~v~~l~~~~~i~~~~Pi~~~-v-y~il~~~~~~~~~~~~l~~ 355 (365)
T PTZ00345 316 EVYEVLESHDLKKEFPLFTV-T-YKIAFEGADPSSLIDVLST 355 (365)
T ss_pred HHHHHHHHcCCCCCCCHHHH-H-HHHHhCCCCHHHHHHHHHc
Confidence 67889999 8999985 3 5666666666777766664
No 59
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.66 E-value=2.5e-15 Score=156.37 Aligned_cols=179 Identities=15% Similarity=0.169 Sum_probs=141.1
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 5 ALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 5 ~~~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
.+++|+||| +|.||.+||+.|.++||+|.+|||++. .++++++.. +|+||+|+|..
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~--------------------~~~~~~~~~---aDlVilavP~~ 153 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW--------------------DRAEDILAD---AGMVIVSVPIH 153 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc--------------------hhHHHHHhc---CCEEEEeCcHH
Confidence 346899998 999999999999999999999998631 144556655 99999999997
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe-CCCCCCHHHhhcCC-ccccCC-CHHHHHHHHH
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGP-SLMPGG-SFEAYNNIRD 160 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsGg~~~a~~G~-~im~gg-~~ea~~~v~~ 160 (505)
....++.++.+ +++|.+|+|+|++.......+.+.+. ..|++ .|++|.+.....|. .+++++ ++++++.+.+
T Consensus 154 -~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~---~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~ 228 (374)
T PRK11199 154 -LTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS---GPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLE 228 (374)
T ss_pred -HHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC---CCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHH
Confidence 57788888988 89999999999987665555544332 25884 68998876666666 555555 6788999999
Q ss_pred HHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHH
Q 010637 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (505)
Q Consensus 161 ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~ 222 (505)
+++.+| ..++++++.+....+++++ .+ ..+..++++..+++ .+ .+.+++.+
T Consensus 229 l~~~lG------~~v~~~~~~~HD~~~a~vs-hL--pH~~a~al~~~l~~-~~-~~~~~~~~ 279 (374)
T PRK11199 229 QIQVWG------ARLHRISAVEHDQNMAFIQ-AL--RHFATFAYGLHLAK-EN-VDLEQLLA 279 (374)
T ss_pred HHHHCC------CEEEECCHHHHHHHHHHHH-HH--HHHHHHHHHHHHHH-cC-CCHHHHHH
Confidence 999999 7899999999999999997 43 56666777777766 55 77776544
No 60
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.65 E-value=1.1e-14 Score=154.46 Aligned_cols=194 Identities=19% Similarity=0.196 Sum_probs=143.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+|+||| +|.||.++|..|.++|++|.+|+|++++..++.... ++..+.++.+.+.. +|+||+|+|.. .
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~------gv~~~~~~~e~~~~---aDvVIlavp~~-~ 70 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKEL------GVEYANDNIDAAKD---ADIVIISVPIN-V 70 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHc------CCeeccCHHHHhcc---CCEEEEecCHH-H
Confidence 5899997 899999999999999999999999988765555432 34566777777776 99999999995 6
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC-CCCCCHHHhhcCC-ccccC---CCHHHHHHHHH
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEGARHGP-SLMPG---GSFEAYNNIRD 160 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsGg~~~a~~G~-~im~g---g~~ea~~~v~~ 160 (505)
+.+++.++.+.+.++.+|+|++++.......+.+.++ .+..|+++ |++|.......|. .+++. .+++.++.+++
T Consensus 71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~-~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ 149 (437)
T PRK08655 71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAP-EGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKN 149 (437)
T ss_pred HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcC-CCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHH
Confidence 7889999999999999999999987766666665543 47889987 8887655556676 44443 36788999999
Q ss_pred HHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHH
Q 010637 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (505)
Q Consensus 161 ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~ 222 (505)
+|+.+| ..++++++......+ .+......+..++.+..+ .+.| ++.++...
T Consensus 150 ll~~~G------~~v~~~~~e~HD~~~---a~vs~lph~~a~al~~~l-~~~g-~~~~~~~~ 200 (437)
T PRK08655 150 FLEKEG------ARVIVTSPEEHDRIM---SVVQGLTHFAYISIASTL-KRLG-VDIKESRK 200 (437)
T ss_pred HHHHcC------CEEEECCHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHcC-CCHHHHHh
Confidence 999999 678888775443333 222222333334444443 4556 88776543
No 61
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.64 E-value=2.3e-15 Score=154.04 Aligned_cols=278 Identities=11% Similarity=0.013 Sum_probs=178.0
Q ss_pred cEEEEcccHHHHHHHHHHHhCC--------CcEEEEeC-----ChHHHHHHHHhhcccCCC-------CeeeeCCHHHHH
Q 010637 8 RIGLAGLAVMGQNLALNVAEKG--------FPISVYNR-----TTSKVDETLDRAHREGQL-------PLTGHYTPRDFV 67 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G--------~~V~v~dr-----~~~~~~~l~~~~~~~g~~-------~i~~~~s~~e~v 67 (505)
||+|||.|.||++||..|+++| |+|.+|.| +++-.+.+.+...+..++ +++.++++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999999 99999999 555555554432211001 466778899888
Q ss_pred hhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchh--HHH-HHHHHHH---CCCeEEeCCCCCCHHHhh
Q 010637 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN--TER-RIHEASQ---KGLLYLGMGVSGGEEGAR 141 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~--t~~-~~~~l~~---~gi~~i~~pvsGg~~~a~ 141 (505)
+. +|+||++||+ ..++.+++++.+++.++.++|.++.+.... +.. ..+.+++ ..+.++..|-.. .+-++
T Consensus 81 ~~---ADiIIlAVPs-~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~lsGP~~A-~Eva~ 155 (342)
T TIGR03376 81 KG---ADILVFVIPH-QFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLSGANLA-NEVAK 155 (342)
T ss_pred hc---CCEEEEECCh-HHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEEeeCcchH-HHHHc
Confidence 87 9999999999 589999999999998889999998887655 433 2233332 222233333332 34444
Q ss_pred cCC-c-cccCCC----HHHHHHHHHHHHHHhcc-----------cCC-CCceEEeCCCcchhhhhhHhhhHHHhHhhHHH
Q 010637 142 HGP-S-LMPGGS----FEAYNNIRDILQKVAAQ-----------VDD-GPCVTYIGEGGSGNFVKMVHNGIEYGDMQLIS 203 (505)
Q Consensus 142 ~G~-~-im~gg~----~ea~~~v~~ll~~iga~-----------~~~-~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~ 203 (505)
.-| . .+.+.+ .+..+.++.+|+.=--+ +.+ -|+++-++. |....+.+-.|.-.+.+.+.+.
T Consensus 156 ~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~-Gi~~Gl~~g~N~~aalitrgl~ 234 (342)
T TIGR03376 156 EKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAA-GFVDGLGWGDNAKAAVMRRGLL 234 (342)
T ss_pred CCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHH
Confidence 555 3 344456 68888888888531111 000 044444432 4444456678999999999999
Q ss_pred HHHHHHHHhCCCCHH--HHHHHHHHhccCCcchhHHhhhhhhcccccc----CCC-chhHHHHHhh--hCCCchHHHHHH
Q 010637 204 EAYDVLKHVGGLSNA--ELAEIFDEWNKGELESFLVEITADIFKVKDE----YGE-GELVDKILDK--TGMKGTGKWTVQ 274 (505)
Q Consensus 204 Ea~~l~~~~g~l~~~--~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~----~~~-~~~l~~i~~~--~~~kgtg~~~~~ 274 (505)
|+..+++..| -+++ .+... .|.++-.+ .... .++.. +.. +..++.+.+. .+++-+|..++.
T Consensus 235 Em~~l~~~~g-~~~~~~T~~gl-----~G~GDL~~--Tc~s--sRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~ 304 (342)
T TIGR03376 235 EMIKFARMFF-PTGEVTFTFES-----CGVADLIT--TCLG--GRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAK 304 (342)
T ss_pred HHHHHHHHhC-CCCCCCccccc-----chhhhhhh--eeec--CccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHH
Confidence 9999999998 5555 44322 12222111 0000 11111 122 4567777777 778888877765
Q ss_pred ----HHHHcCCC--cchHHHHHHHHHHhcchHHHH
Q 010637 275 ----QAAELSVA--APTIAASLDCRYLSGLKEERE 303 (505)
Q Consensus 275 ----~A~~~gvp--~p~i~~av~~r~~s~~~~~r~ 303 (505)
.++++++. +|++.+ + .+.+...++.+.
T Consensus 305 ~~~~l~~~~~i~~~~Pi~~~-v-y~il~~~~~~~~ 337 (342)
T TIGR03376 305 EVHELLKNKNKDDEFPLFEA-V-YQILYEGLPPKK 337 (342)
T ss_pred HHHHHHHHcCCCcCCCHHHH-H-HHHHhCCCCHHH
Confidence 48889999 999985 3 444444444433
No 62
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.64 E-value=3.3e-16 Score=166.44 Aligned_cols=117 Identities=18% Similarity=0.305 Sum_probs=100.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH---HHHhcCCCceecccHHHHHHHHhcCCCCC-CCc
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGEL---ARIWKGGCIIRAVFLDRIKKAYQRNPNLA-SLV 401 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i---~~iW~~Gciirs~lL~~i~~~~~~~~~~~-~ll 401 (505)
+++||+||+||+|+|+.|++++|+|.|+++.. + +|..++ ++.|+.| .++|+++++..++|+++++.. ..+
T Consensus 176 GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~---g--l~~~~l~~v~~~w~~g-~~~S~l~ei~~~~~~~~d~~~~~~~ 249 (470)
T PTZ00142 176 SSGHYVKMVHNGIEYGDMQLISESYKLMKHIL---G--MSNEELSEVFNKWNEG-ILNSYLIEITAKILAKKDDLGEEHL 249 (470)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc---C--CCHHHHHHHHHHHcCC-CccCHHHHHHHHHhhcccccCCCcc
Confidence 58999999999999999999999999998432 2 665555 5669999 589999999999999875433 578
Q ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCChh
Q 010637 402 VDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (505)
Q Consensus 402 ~~~~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~--y~~~~~~~~~~ 450 (505)
+|.+.+...+++++ ||+|++|+++|||+|+|++||+ ++++++..|..
T Consensus 250 l~~i~d~~~~~gtg--~wt~~~a~~~~v~~p~i~~a~~~R~~S~~k~~r~~ 298 (470)
T PTZ00142 250 VDKILDIAGSKGTG--KWTVQEALERGIPVPTMAASVDARNISALKEERTK 298 (470)
T ss_pred hhhhcCcccCCchH--HhHHHHHHHcCCCchHHHHHHHHHHhhhhHHHHHH
Confidence 89999999999999 9999999999999999999999 67777776654
No 63
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.63 E-value=9.8e-14 Score=137.40 Aligned_cols=238 Identities=11% Similarity=0.080 Sum_probs=152.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc---EEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFP---ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~---V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
|+|||||+|.||.+|++.|.+.|+. |.+|+|++++.+++.+... ++..+.++.++++. +|+||+++|+
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~-----~~~~~~~~~~~~~~---aDvVilav~p- 71 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFP-----KVRIAKDNQAVVDR---SDVVFLAVRP- 71 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcC-----CceEeCCHHHHHHh---CCEEEEEeCH-
Confidence 4799999999999999999999865 5799999999888876531 24567889888877 9999999996
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHHHH
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQ 163 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ll~ 163 (505)
..+.+++.++ . +.++++||++..+. ....+.+.+......+..+|..... ...|.+.+++++ +.++++|+
T Consensus 72 ~~~~~vl~~l-~-~~~~~~vis~~ag~--~~~~l~~~~~~~~~~~r~~P~~~~a--~~~g~t~~~~~~----~~~~~l~~ 141 (258)
T PRK06476 72 QIAEEVLRAL-R-FRPGQTVISVIAAT--DRAALLEWIGHDVKLVRAIPLPFVA--ERKGVTAIYPPD----PFVAALFD 141 (258)
T ss_pred HHHHHHHHHh-c-cCCCCEEEEECCCC--CHHHHHHHhCCCCCEEEECCCChhh--hCCCCeEecCCH----HHHHHHHH
Confidence 5788888776 2 56789999977654 4445555554433456677863222 234555555553 47899999
Q ss_pred HHhcccCCCCceEEeCCC-cchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhh
Q 010637 164 KVAAQVDDGPCVTYIGEG-GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD 242 (505)
Q Consensus 164 ~iga~~~~~~~v~~vG~~-G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~ 242 (505)
.+| .++. +++. ..-.+.=+. +.....+.++.++..++.+.| +++++..+++.+.-.|. ..
T Consensus 142 ~lG------~~~~-~~~e~~~d~~~a~~--s~~a~~~~~~~~~~~~~~~~G-l~~~~a~~~~~~~~~G~---------~~ 202 (258)
T PRK06476 142 ALG------TAVE-CDSEEEYDLLAAAS--ALMATYFGILETATGWLEEQG-LKRQKARAYLAPLFASL---------AQ 202 (258)
T ss_pred hcC------CcEE-ECChHhccceeehh--ccHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHH---------HH
Confidence 999 3333 4432 000000000 122223346788888999998 99999998875433322 22
Q ss_pred h-ccccccCCCchhHHHHHh-hhCCCchHHHHHHHHHHcCCCcchHH
Q 010637 243 I-FKVKDEYGEGELVDKILD-KTGMKGTGKWTVQQAAELSVAAPTIA 287 (505)
Q Consensus 243 i-l~~~~~~~~~~~l~~i~~-~~~~kgtg~~~~~~A~~~gvp~p~i~ 287 (505)
. +.. .+.++ +.+.| ...--||..-.+..-.+.|+.-.++.
T Consensus 203 l~~~~-~~~~~----~~l~~~v~spgGtT~~gl~~le~~~~~~~~~~ 244 (258)
T PRK06476 203 DAVRS-TKTDF----SALSREFSTKGGLNEQVLNDFSRQGGYAALTD 244 (258)
T ss_pred HHHhc-CCCCH----HHHHHhCCCCCchHHHHHHHHHHCChHHHHHH
Confidence 2 222 21222 23333 33344566555555566777644433
No 64
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.63 E-value=1.6e-13 Score=136.44 Aligned_cols=243 Identities=14% Similarity=0.134 Sum_probs=153.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCC---CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKG---FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G---~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
|||+|+|||+|.||..++..|.++| ++|.+|+|++++.+.+.+.. ++....+..++++. +|+||+++|
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~------g~~~~~~~~~~~~~---advVil~v~ 71 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY------GVRAATDNQEAAQE---ADVVVLAVK 71 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc------CCeecCChHHHHhc---CCEEEEEcC
Confidence 3678999999999999999999999 78999999999888776642 24566788887766 999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC-CCCCCHHHhhcCC-ccccCC--CHHHHHH
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEGARHGP-SLMPGG--SFEAYNN 157 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsGg~~~a~~G~-~im~gg--~~ea~~~ 157 (505)
+. .++++++.+.+.+ +++||+++++.+.. .+.+.+. .+.+++.+ | ..+.....|. .+.++. ++++++.
T Consensus 72 ~~-~~~~v~~~l~~~~--~~~vvs~~~gi~~~--~l~~~~~-~~~~iv~~~P--~~p~~~~~~~~~i~~~~~~~~~~~~~ 143 (267)
T PRK11880 72 PQ-VMEEVLSELKGQL--DKLVVSIAAGVTLA--RLERLLG-ADLPVVRAMP--NTPALVGAGMTALTANALVSAEDREL 143 (267)
T ss_pred HH-HHHHHHHHHHhhc--CCEEEEecCCCCHH--HHHHhcC-CCCcEEEecC--CchHHHcCceEEEecCCCCCHHHHHH
Confidence 85 7999999998877 57888888877543 3333332 34455543 3 2233334444 445554 8899999
Q ss_pred HHHHHHHHhcccCCCCceEEeCCCcchhhhh-hHhhhHHHhHhhHHHHHHHH-HHHhCCCCHHHHHHHHHHhccCCcchh
Q 010637 158 IRDILQKVAAQVDDGPCVTYIGEGGSGNFVK-MVHNGIEYGDMQLISEAYDV-LKHVGGLSNAELAEIFDEWNKGELESF 235 (505)
Q Consensus 158 v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK-~v~N~i~~~~~~~i~Ea~~l-~~~~g~l~~~~i~~v~~~~~~g~~~s~ 235 (505)
++.+|+.+| . ++++.++..=+.+- +..++-. .+..+.|++.- +.+.| +++++..+++.++-.|..
T Consensus 144 v~~l~~~lG------~-~~~~~~e~~~d~~~a~~~~~pa--~~~~~~~~~~~~~~~~G-l~~~~a~~~~~~~~~g~~--- 210 (267)
T PRK11880 144 VENLLSAFG------K-VVWVDDEKQMDAVTAVSGSGPA--YVFLFIEALADAGVKLG-LPREQARKLAAQTVLGAA--- 210 (267)
T ss_pred HHHHHHhCC------e-EEEECChHhcchHHHHhcChHH--HHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHH---
Confidence 999999999 4 55665322112211 2222111 12222333333 45567 999999888765433332
Q ss_pred HHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHH
Q 010637 236 LVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIA 287 (505)
Q Consensus 236 l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~ 287 (505)
..+.+.+ .++. +.+.+..-.-||..-.+....+.|++-.++.
T Consensus 211 ------~~~~~~~-~~~~---~l~~~v~tpgG~t~~gl~~l~~~g~~~~~~~ 252 (267)
T PRK11880 211 ------KLLLESG-EHPA---ELRDNVTSPGGTTIAALRVLEEKGLRAAVIE 252 (267)
T ss_pred ------HHHHhcC-CCHH---HHHHhCCCCcHHHHHHHHHHHHCCHHHHHHH
Confidence 2222211 1221 2223333344555556666777888755554
No 65
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.62 E-value=1.3e-14 Score=147.33 Aligned_cols=174 Identities=17% Similarity=0.225 Sum_probs=129.2
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
|+..+.++|+|||+|.||..+|..|.+.|+ +|.+|||++++.+.+.+.+. ....+.+++++++. +|+||+
T Consensus 1 ~~~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~-----~~~~~~~~~~~~~~---aDvVii 72 (307)
T PRK07502 1 MSAPLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGL-----GDRVTTSAAEAVKG---ADLVIL 72 (307)
T ss_pred CCccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCC-----CceecCCHHHHhcC---CCEEEE
Confidence 655556799999999999999999999995 89999999998877665432 12345677777665 999999
Q ss_pred EcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC-CCCCCHH-Hhh-------cCC-c---
Q 010637 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEE-GAR-------HGP-S--- 145 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsGg~~-~a~-------~G~-~--- 145 (505)
|+|.. ....++.++.+.++++.+|+|.++......+...+.+ ..+++|+++ |+.|++. +.. .|. .
T Consensus 73 avp~~-~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~-~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~ 150 (307)
T PRK07502 73 CVPVG-ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHL-PEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILT 150 (307)
T ss_pred CCCHH-HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhC-CCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEe
Confidence 99995 6788888888889999999999887655544444433 347789987 8887542 222 222 2
Q ss_pred cccCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhH
Q 010637 146 LMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMV 190 (505)
Q Consensus 146 im~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v 190 (505)
.+.++++++++.++++++.+| .+++++++......+-++
T Consensus 151 ~~~~~~~~~~~~~~~l~~~lG------~~~~~~~~~~hD~~~A~~ 189 (307)
T PRK07502 151 PPEGTDPAAVARLTAFWRALG------ARVEEMDPEHHDLVLAIT 189 (307)
T ss_pred CCCCCCHHHHHHHHHHHHHcC------CEEEEcCHHHHhHHHHHH
Confidence 224678899999999999999 678888775544444333
No 66
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.62 E-value=3.1e-14 Score=144.09 Aligned_cols=255 Identities=18% Similarity=0.200 Sum_probs=162.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhccc----CC--CCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE----GQ--LPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~----g~--~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|||+|||+|.||..+|..|+++|++|++|+| +++.+.+.+.+... +. ......++.++... .+|+||+++
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~vilav 76 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTG---PFDLVILAV 76 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccC---CCCEEEEEe
Confidence 5899999999999999999999999999999 77887776543210 00 00112345555444 389999999
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC----CCeEEeCCCCCCHHHhhcCC-ccccCC----C
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-SLMPGG----S 151 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsGg~~~a~~G~-~im~gg----~ 151 (505)
|+. +++++++.+.+.+.++.+||...|+.. ....+.+.+.+. ++.++++...++..-...++ .+..|. .
T Consensus 77 k~~-~~~~~~~~l~~~~~~~~~ii~~~nG~~-~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~ 154 (305)
T PRK12921 77 KAY-QLDAAIPDLKPLVGEDTVIIPLQNGIG-QLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR 154 (305)
T ss_pred ccc-CHHHHHHHHHhhcCCCCEEEEeeCCCC-hHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence 996 789999999998888899998888753 233444444332 34455554433211111233 344443 2
Q ss_pred HHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHH---------------------HhHhhHHHHHHHHHH
Q 010637 152 FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIE---------------------YGDMQLISEAYDVLK 210 (505)
Q Consensus 152 ~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~---------------------~~~~~~i~Ea~~l~~ 210 (505)
.+..+.+..+|...+ ..+....+.-...+.|++.|... .....++.|+..+++
T Consensus 155 ~~~~~~l~~~l~~~g------~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~ 228 (305)
T PRK12921 155 SERTRAVRDALAGAR------LEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVAR 228 (305)
T ss_pred CHHHHHHHHHHHhCC------CCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 345566777777766 34444444556678887777432 334567899999999
Q ss_pred HhCCCC--HHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHH
Q 010637 211 HVGGLS--NAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 211 ~~g~l~--~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
+.| ++ .+.+.+.+....... .....++..++..++ ...+|.+... .++.|+++|+|+|....
T Consensus 229 a~G-~~~~~~~~~~~~~~~~~~~-~~~~sSm~~D~~~gr-----~tEid~i~G~---------vv~~a~~~gv~~P~~~~ 292 (305)
T PRK12921 229 AEG-APLRDDVVEEIVKIFAGAP-GDMKTSMLRDMEKGR-----PLEIDHLQGV---------LLRRARAHGIPTPILDT 292 (305)
T ss_pred HcC-CCCChhHHHHHHHHHhccC-CCCCcHHHHHHHcCC-----cccHHHHHHH---------HHHHHHHhCCCCcHHHH
Confidence 988 76 334444443221111 112233444555432 1467777654 68899999999998875
Q ss_pred H
Q 010637 289 S 289 (505)
Q Consensus 289 a 289 (505)
.
T Consensus 293 l 293 (305)
T PRK12921 293 V 293 (305)
T ss_pred H
Confidence 3
No 67
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.60 E-value=1.2e-15 Score=162.36 Aligned_cols=116 Identities=12% Similarity=0.229 Sum_probs=97.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHH---HHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcc
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFG---ELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVV 402 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~---~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~ 402 (505)
+++||+||+||+|+|++|++++|+|.|+++.. + +|.. ++++.|+.| .++|++++....+|+++++....|+
T Consensus 173 GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~---g--~~~~~l~~v~~~w~~~-~~~S~l~~~~~~~~~~~d~~~~~~l 246 (467)
T TIGR00873 173 GAGHYVKMVHNGIEYGDMQLICEAYDILKDGL---G--LSNEEIAEVFTEWNNG-ELDSYLIEITADILKKKDEDGKPLV 246 (467)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C--CCHHHHHHHHHHhcCC-cccchHHHhHHHHHhccCCCCCccH
Confidence 58999999999999999999999999997432 3 5554 456668998 7899999999999998544456888
Q ss_pred cHHHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCh
Q 010637 403 DPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARL 449 (505)
Q Consensus 403 ~~~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~--y~~~~~~~~~ 449 (505)
|.+.+...+++++ ||+|++|+++|||+|+|+++++ +.+..+..|.
T Consensus 247 ~~i~~~~~~~gtg--~wt~~~a~~~~v~~p~i~~av~~R~~S~~k~~r~ 293 (467)
T TIGR00873 247 DKILDTAGQKGTG--KWTAISALDLGVPVTLITESVFARYLSSLKEERV 293 (467)
T ss_pred HhhcCcccCccHH--HHHHHHHHHcCCCchHHHHHHHHHhccccHHHHH
Confidence 9999999999999 9999999999999999999999 4444555544
No 68
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.60 E-value=2e-13 Score=139.75 Aligned_cols=277 Identities=12% Similarity=0.105 Sum_probs=157.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhccc----C-C--CCeeeeCCHHHHH-hhcCCCcEEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE----G-Q--LPLTGHYTPRDFV-LSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~----g-~--~~i~~~~s~~e~v-~~l~~advIil 78 (505)
|||+|||+|.||..+|..|+++|++|.+|+|+++.++.+.+.+... + . .++....++.+.+ .. +|+||+
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~Dliii 77 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDN---ATCIIL 77 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCC---CCEEEE
Confidence 4799999999999999999999999999999998888877642110 0 0 0244566777665 34 899999
Q ss_pred EcCCCchHHHHHHHHHh-cCCCCcEEEecCCCCchh-----HHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-cc-ccCC
Q 010637 79 LVKAGSPVDQTIAALSE-HMSPGDCIIDGGNEWYLN-----TERRIHEASQKGLLYLGMGVSGGEEGARHGP-SL-MPGG 150 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~-~l~~g~iIId~st~~~~~-----t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~i-m~gg 150 (505)
+||+. .++++++.+.+ .+.++..|+..+++.... .+.+.+.+....+..+..|-. ..+.+...+ .+ +.|.
T Consensus 78 avks~-~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~-a~~~~~~~~~~~~~~~~ 155 (326)
T PRK14620 78 AVPTQ-QLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSF-AKEIAEKLPCSIVLAGQ 155 (326)
T ss_pred EeCHH-HHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcH-HHHHHcCCCcEEEEecC
Confidence 99995 89999999998 888777777777776432 222233332222222222211 113334344 33 3444
Q ss_pred CHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHh-----------------hhHHHhHhhHHHHHHHHHHHhC
Q 010637 151 SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVH-----------------NGIEYGDMQLISEAYDVLKHVG 213 (505)
Q Consensus 151 ~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~-----------------N~i~~~~~~~i~Ea~~l~~~~g 213 (505)
+.+..+.+..+|+.-+ ..+....+.-.-.+.|++- |.....+.+++.|+..+++..|
T Consensus 156 ~~~~~~~l~~~l~~~~------~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G 229 (326)
T PRK14620 156 NETLGSSLISKLSNEN------LKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKN 229 (326)
T ss_pred CHHHHHHHHHHHCCCC------eEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhC
Confidence 5554455555554333 2222222222223334433 3444456788999999999987
Q ss_pred CC--CHHHHH------HHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchH----HHHHHHHHHcCC
Q 010637 214 GL--SNAELA------EIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTG----KWTVQQAAELSV 281 (505)
Q Consensus 214 ~l--~~~~i~------~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg----~~~~~~A~~~gv 281 (505)
. +++++. +.+..-.....+++-+... + ..+..++.+.+...+.-+| +...+.|+++|+
T Consensus 230 -~~~~~~~~~gl~g~gdl~~t~~~~~~rN~~~G~~---l------~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i 299 (326)
T PRK14620 230 -GSIDLNTLIGPSCLGDLILTCTTLHSRNMSFGFK---I------GNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNI 299 (326)
T ss_pred -CCCCcchhhccchhhhhhheecCCCCCcHHHHHH---H------HCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCC
Confidence 5 777773 3331111011112111100 0 0112233333222111112 367789999999
Q ss_pred CcchHHHHHHHHHHhcchHHHHHHH
Q 010637 282 AAPTIAASLDCRYLSGLKEEREKAA 306 (505)
Q Consensus 282 p~p~i~~av~~r~~s~~~~~r~~~~ 306 (505)
++|++.. + .+.+...++....+.
T Consensus 300 ~~P~~~~-l-~~~~~~~~~~~~~~~ 322 (326)
T PRK14620 300 ELPICES-I-YNLLYENISLEKTIS 322 (326)
T ss_pred CCCHHHH-H-HHHHhCCCCHHHHHH
Confidence 9999885 3 344443344444433
No 69
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.60 E-value=5.4e-13 Score=132.96 Aligned_cols=195 Identities=13% Similarity=0.097 Sum_probs=133.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF----PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~----~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.++|||||+|.||.+|+.+|.++|+ +|+++||++++.+.+.+.. ++..+.+..+++.. +|+||+|||
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~------g~~~~~~~~e~~~~---aDiIiLavk 72 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKY------GITITTNNNEVANS---ADILILSIK 72 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhc------CcEEeCCcHHHHhh---CCEEEEEeC
Confidence 4589999999999999999999885 6999999999988876532 24567788888877 999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeE-EeCCCCCCHHHhhcCC-ccccC--CCHHHHHH
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY-LGMGVSGGEEGARHGP-SLMPG--GSFEAYNN 157 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~-i~~pvsGg~~~a~~G~-~im~g--g~~ea~~~ 157 (505)
+ ..+.++++++.+.+.++.+||+.-.+.. ...+.+.+... ... --+|-. +.....|. .+.++ .+++..+.
T Consensus 73 P-~~~~~vl~~l~~~~~~~~lvISi~AGi~--i~~l~~~l~~~-~~vvR~MPN~--~~~vg~g~t~~~~~~~~~~~~~~~ 146 (272)
T PRK12491 73 P-DLYSSVINQIKDQIKNDVIVVTIAAGKS--IKSTENEFDRK-LKVIRVMPNT--PVLVGEGMSALCFNEMVTEKDIKE 146 (272)
T ss_pred h-HHHHHHHHHHHHhhcCCcEEEEeCCCCc--HHHHHHhcCCC-CcEEEECCCh--HHHHcCceEEEEeCCCCCHHHHHH
Confidence 7 6899999999998888899999888764 34455555321 122 234533 23345566 33333 25567788
Q ss_pred HHHHHHHHhcccCCCCceEEeCCCc--chhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010637 158 IRDILQKVAAQVDDGPCVTYIGEGG--SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDE 226 (505)
Q Consensus 158 v~~ll~~iga~~~~~~~v~~vG~~G--~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~ 226 (505)
++.+|+.+| . ++.+.+.- ....+-=+--++.+.++..+.++ +.+.| ++.++..++..+
T Consensus 147 v~~lf~~~G------~-~~~~~E~~~d~~talsgsgPAf~~~~~eal~~a---~v~~G-l~~~~A~~l~~~ 206 (272)
T PRK12491 147 VLNIFNIFG------Q-TEVVNEKLMDVVTSISGSSPAYVYMFIEAMADA---AVLGG-MPRKQAYKFAAQ 206 (272)
T ss_pred HHHHHHcCC------C-EEEEcHHHhhhHHHhccCcHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH
Confidence 999999999 3 45554321 11111111123334455555555 44566 999999888754
No 70
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.58 E-value=2.1e-15 Score=159.77 Aligned_cols=117 Identities=13% Similarity=0.245 Sum_probs=97.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH---HHHhcCCCceecccHHHHHHHHhcCCC-CCCCc
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGEL---ARIWKGGCIIRAVFLDRIKKAYQRNPN-LASLV 401 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i---~~iW~~Gciirs~lL~~i~~~~~~~~~-~~~ll 401 (505)
+++||+||+||+|+|++|++++|+|.|+++.. + +|..++ ++.|+.| .++|+++++...++.+.+. ....+
T Consensus 165 GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~---G--l~~~~l~~v~~~wn~g-~~~S~l~ei~~~~l~~~d~~~~~~~ 238 (459)
T PRK09287 165 GAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGL---G--LSAEEIADVFAEWNKG-ELNSYLIEITADILRQKDEETGKPL 238 (459)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C--CCHHHHHHHHHHhcCC-CccChHHHhHhHHHhcCCCCCCCcc
Confidence 58999999999999999999999999999421 2 655555 5668999 5899999999999987542 34588
Q ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCChh
Q 010637 402 VDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (505)
Q Consensus 402 ~~~~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~--y~~~~~~~~~~ 450 (505)
+|.+.+...+|+++ ||++++|+++|+|+|+|+++++ +.+.++..|..
T Consensus 239 ~d~i~d~~~~~gtg--~Wt~~~a~~~~v~~~~i~~AvfaR~~S~~k~~r~~ 287 (459)
T PRK09287 239 VDVILDKAGQKGTG--KWTSQSALDLGVPLTLITEAVFARYLSSLKDQRVA 287 (459)
T ss_pred hHHhcCcccCCcHH--HHHHHHHHHhCCChHHHHHHHHHHhccccHHHHHH
Confidence 89999999999999 9999999999999999999999 44455555543
No 71
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.58 E-value=1.8e-13 Score=135.69 Aligned_cols=192 Identities=9% Similarity=0.079 Sum_probs=132.2
Q ss_pred CcEEEEcccHH--------------------HHHHHHHHHhCCCcEEEEeCChHHHH-----HHHHhhcccCCCCeeeeC
Q 010637 7 SRIGLAGLAVM--------------------GQNLALNVAEKGFPISVYNRTTSKVD-----ETLDRAHREGQLPLTGHY 61 (505)
Q Consensus 7 ~~IgIIGlG~M--------------------G~~lA~~La~~G~~V~v~dr~~~~~~-----~l~~~~~~~g~~~i~~~~ 61 (505)
|||.|+|+|+- |.+||.+|+++||+|++|||++++++ .+.+. ++..++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~Laea-------GA~~Aa 73 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDA-------GVKVVS 73 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHC-------CCeecC
Confidence 57889998864 78999999999999999999987653 35443 356788
Q ss_pred CHHHHHhhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHH-HH--HCCCe---EEeCCCCC
Q 010637 62 TPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE-AS--QKGLL---YLGMGVSG 135 (505)
Q Consensus 62 s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~-l~--~~gi~---~i~~pvsG 135 (505)
++.++++. +|+||+|+|++.+++++++++.+.+.+|.+|||+||+.|.......+. ++ .+.+. |..+.|-|
T Consensus 74 S~aEAAa~---ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~ 150 (341)
T TIGR01724 74 DDKEAAKH---GEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPG 150 (341)
T ss_pred CHHHHHhC---CCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCC
Confidence 99999988 999999999999999999999999999999999999999988876654 32 23332 22233433
Q ss_pred CHHHhhcCCccccC--------CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHH
Q 010637 136 GEEGARHGPSLMPG--------GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYD 207 (505)
Q Consensus 136 g~~~a~~G~~im~g--------g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~ 207 (505)
.+.. +-.++.| .++|..+++-++.+..+ +..+.+-..-.+...-|. ....+...+.+.+-+.
T Consensus 151 ~~~~---~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~------~~~~~~pa~l~~~v~Dm~-s~vta~~~~gil~y~~ 220 (341)
T TIGR01724 151 TPQH---GHYVIGGKPTAGKEMATEEQISKCVELAKSTG------KKAYVVPADVTSAVADMG-SLVTAVALAGVLDYYY 220 (341)
T ss_pred CCCC---ceeeeccccccccccCCHHHHHHHHHHHHHhC------CCeeecchhhcchhhhHH-HHHHHHHHHHHHHHHH
Confidence 3221 1122222 27788899999999988 556655333223333333 2223334455556666
Q ss_pred HHHHhCCCCHH
Q 010637 208 VLKHVGGLSNA 218 (505)
Q Consensus 208 l~~~~g~l~~~ 218 (505)
...+..|.+.+
T Consensus 221 ~~t~i~~ap~~ 231 (341)
T TIGR01724 221 VGTQIINAPKE 231 (341)
T ss_pred HHHHHhcCcHH
Confidence 66555545544
No 72
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.58 E-value=8.1e-14 Score=140.90 Aligned_cols=254 Identities=17% Similarity=0.203 Sum_probs=151.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcc--cCCC--CeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR--EGQL--PLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~--~g~~--~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+|+|||+|.||..+|..|+++|++|++++|++++.+.+.+.+.. .|.. .+....+++++ + .+|+||+++|.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~---~~d~vila~k~ 76 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G---PQDLVILAVKA 76 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C---CCCEEEEeccc
Confidence 589999999999999999999999999999998888877765421 0000 01223445443 3 49999999998
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC----CCeEEeCCCCCCHHHhhcCC-ccccCC---CHHH
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-SLMPGG---SFEA 154 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsGg~~~a~~G~-~im~gg---~~ea 154 (505)
. +++.++..+.+.+.++.+||...|+.. ..+.+.+.+... |+.++++-..+.......+. .+..|. +.+.
T Consensus 77 ~-~~~~~~~~l~~~l~~~~~iv~~~nG~~-~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~ 154 (304)
T PRK06522 77 Y-QLPAALPSLAPLLGPDTPVLFLQNGVG-HLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAA 154 (304)
T ss_pred c-cHHHHHHHHhhhcCCCCEEEEecCCCC-cHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHH
Confidence 6 789999999999988889999888753 223334434322 11222221222111111122 233332 2233
Q ss_pred HHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhh---------------------hHHHhHhhHHHHHHHHHHHhC
Q 010637 155 YNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHN---------------------GIEYGDMQLISEAYDVLKHVG 213 (505)
Q Consensus 155 ~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N---------------------~i~~~~~~~i~Ea~~l~~~~g 213 (505)
.+.+.++|+..+ ..+....+.-...+.|++.| ........++.|+..++++.|
T Consensus 155 ~~~l~~~l~~~~------~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G 228 (304)
T PRK06522 155 AEALADLLNAAG------LDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEG 228 (304)
T ss_pred HHHHHHHHHhcC------CCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcC
Confidence 566777777665 23322222333444444433 233445677899999999987
Q ss_pred CCC--HHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHH
Q 010637 214 GLS--NAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 214 ~l~--~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
++ .+.+.+.+......... ...++..++...+. ..+|.+.. +.++.|+++|+|+|....
T Consensus 229 -~~~~~~~~~~~~~~~~~~~~~-~~sSm~~D~~~gr~-----tEid~i~G---------~~v~~a~~~gv~~P~~~~ 289 (304)
T PRK06522 229 -VHLSVEEVREYVRQVIQKTAA-NTSSMLQDLEAGRP-----TEIDAIVG---------YVLRRGRKHGIPTPLNDA 289 (304)
T ss_pred -CCCChHHHHHHHHHHhhccCC-CCchHHHHHHcCCC-----cccchhcc---------HHHHHHHHcCCCCcHHHH
Confidence 65 34444444322211111 11233345444321 35666553 578999999999998764
No 73
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.58 E-value=4.7e-14 Score=143.29 Aligned_cols=178 Identities=13% Similarity=0.117 Sum_probs=133.8
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChHH-------HHHHHH-------hhcccCCC----------CeeeeCC--HHHHHhhc
Q 010637 17 MGQNLALNVAEKGFPISVYNRTTSK-------VDETLD-------RAHREGQL----------PLTGHYT--PRDFVLSI 70 (505)
Q Consensus 17 MG~~lA~~La~~G~~V~v~dr~~~~-------~~~l~~-------~~~~~g~~----------~i~~~~s--~~e~v~~l 70 (505)
||..||..++.+|++|.+||++++. ++...+ .....|.. +++++.+ +.++++.
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~- 79 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALAD- 79 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhcc-
Confidence 8999999999999999999999842 111110 00001100 4666554 5666666
Q ss_pred CCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHH----HCCCeEEeCC-------CCCCHH
Q 010637 71 QRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEAS----QKGLLYLGMG-------VSGGEE 138 (505)
Q Consensus 71 ~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~----~~gi~~i~~p-------vsGg~~ 138 (505)
+|+||.|||+...++..+ .++.+.++++.|| +||++.....++++.+. ..|+||+++| |++|+
T Consensus 80 --aD~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~- 154 (314)
T PRK08269 80 --ADLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSD- 154 (314)
T ss_pred --CCEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCC-
Confidence 999999999999998877 6787888888888 55555556667777663 3488999988 65554
Q ss_pred HhhcCCccccCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHH
Q 010637 139 GARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNA 218 (505)
Q Consensus 139 ~a~~G~~im~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~ 218 (505)
++++++++++.++++.+| +.++++++.+ |++ -|. ..+.+++|++.++++++ ++++
T Consensus 155 ----------~t~~e~~~~~~~ll~~lG------k~~v~v~d~~-Gfi----~nr---i~~~~l~EAl~l~e~g~-~~~e 209 (314)
T PRK08269 155 ----------ATDPAVVDRLAALLERIG------KVPVVCGPSP-GYI----VPR---IQALAMNEAARMVEEGV-ASAE 209 (314)
T ss_pred ----------CCCHHHHHHHHHHHHHcC------CcEEEecCCC-Ccc----hHH---HHHHHHHHHHHHHHhCC-CCHH
Confidence 579999999999999999 8899998754 543 343 36677799999999988 9999
Q ss_pred HHHHHHH
Q 010637 219 ELAEIFD 225 (505)
Q Consensus 219 ~i~~v~~ 225 (505)
++++++.
T Consensus 210 ~iD~a~~ 216 (314)
T PRK08269 210 DIDKAIR 216 (314)
T ss_pred HHHHHHH
Confidence 9999974
No 74
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.54 E-value=1.8e-13 Score=136.81 Aligned_cols=193 Identities=16% Similarity=0.226 Sum_probs=132.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhh-------cccCCC----------CeeeeCCHHHHHh
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HREGQL----------PLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~~----------~i~~~~s~~e~v~ 68 (505)
.++|||||.|.||..+|..++..||+|.++|++++.+++..... ...|.+ +++...++.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~--- 79 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAA--- 79 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhH---
Confidence 46899999999999999999998899999999987654433211 011100 3455555553
Q ss_pred hcCCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHH--HC--CCeEEeCCCCCCHHHhhcC
Q 010637 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEAS--QK--GLLYLGMGVSGGEEGARHG 143 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~--~~--gi~~i~~pvsGg~~~a~~G 143 (505)
++.||+||.+|++...++.-+ .++-+..+++.|+-..+++.+.+ ++++.+. ++ |+||+++|....-.
T Consensus 80 -l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it--~ia~~~~rper~iG~HFfNP~~~m~LV----- 151 (307)
T COG1250 80 -LKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSIT--ELAEALKRPERFIGLHFFNPVPLMPLV----- 151 (307)
T ss_pred -hccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHH--HHHHHhCCchhEEEEeccCCCCcceeE-----
Confidence 334999999999998887655 67777777777776555554433 3444332 22 77888765221111
Q ss_pred CccccC--CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHH
Q 010637 144 PSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELA 221 (505)
Q Consensus 144 ~~im~g--g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~ 221 (505)
-++.| .++++++.+.++.+.++ +.+ .+..+-.|+++ |.+ ....+.|++.++.++. .++++++
T Consensus 152 -EvI~g~~T~~e~~~~~~~~~~~ig------K~~-vv~~D~pGFi~----NRi---l~~~~~eA~~l~~eGv-a~~e~ID 215 (307)
T COG1250 152 -EVIRGEKTSDETVERVVEFAKKIG------KTP-VVVKDVPGFIV----NRL---LAALLNEAIRLLEEGV-ATPEEID 215 (307)
T ss_pred -EEecCCCCCHHHHHHHHHHHHHcC------CCC-EeecCCCceeh----HhH---HHHHHHHHHHHHHhCC-CCHHHHH
Confidence 12333 37899999999999999 555 33344556655 444 4566699999999987 9999999
Q ss_pred HHHH
Q 010637 222 EIFD 225 (505)
Q Consensus 222 ~v~~ 225 (505)
.+++
T Consensus 216 ~~~~ 219 (307)
T COG1250 216 AAMR 219 (307)
T ss_pred HHHH
Confidence 9975
No 75
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.53 E-value=3.5e-13 Score=139.75 Aligned_cols=172 Identities=13% Similarity=0.156 Sum_probs=125.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|||+|.||.+||+.|.++|++|.+|+++++..+.....+... --...++++++++. +|+||+|||.. .+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~~---aDlVilavP~~-~~ 73 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGV---IDELAADLQRAAAE---ADLIVLAVPVD-AT 73 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCC---CcccccCHHHHhcC---CCEEEEeCCHH-HH
Confidence 3699999999999999999999999999999887654433322110 01234566777666 99999999995 78
Q ss_pred HHHHHHHHh-cCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe-CCCCCCHH-H-------hhcCC-ccccC---CCH
Q 010637 87 DQTIAALSE-HMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEE-G-------ARHGP-SLMPG---GSF 152 (505)
Q Consensus 87 ~~vl~~l~~-~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsGg~~-~-------a~~G~-~im~g---g~~ 152 (505)
..++.++.+ .+.++.+|.|.++..........+. ...+..|++ .|+.|++. + ...|. .+++. +++
T Consensus 74 ~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~-~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~ 152 (359)
T PRK06545 74 AALLAELADLELKPGVIVTDVGSVKGAILAEAEAL-LGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDP 152 (359)
T ss_pred HHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHh-cCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCH
Confidence 899999987 4888999999999876555544443 335678998 58887641 2 22344 33332 578
Q ss_pred HHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhh
Q 010637 153 EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHN 192 (505)
Q Consensus 153 ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N 192 (505)
+.++.++++++.+| .+++++.+......+.++..
T Consensus 153 ~~~~~v~~l~~~lG------a~~v~~~~~~HD~~~A~vsh 186 (359)
T PRK06545 153 DAVAELKDLLSGTG------AKFVVLDAEEHDRAVALVSH 186 (359)
T ss_pred HHHHHHHHHHHHcC------CEEEECCHHHHhHHHhHhcc
Confidence 89999999999999 67888887666666655543
No 76
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.50 E-value=1.7e-12 Score=132.26 Aligned_cols=252 Identities=13% Similarity=0.129 Sum_probs=153.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcc----cCCC---CeeeeCCHHHHHhhcCCCcEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR----EGQL---PLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~----~g~~---~i~~~~s~~e~v~~l~~advIil 78 (505)
.|+|+|||+|.||..+|..|+++|++|+++.|++. +.+.+.+.. .+.. .+....++++ +..+|+||+
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~D~vil 78 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAED----MPPCDWVLV 78 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhh----cCCCCEEEE
Confidence 46999999999999999999999999999999863 344443311 0000 0112223332 234899999
Q ss_pred EcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC----CCeEEeCCCCCCH--HHhhcCCcc---ccC
Q 010637 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGE--EGARHGPSL---MPG 149 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsGg~--~~a~~G~~i---m~g 149 (505)
|||.. ++.++++.+.+.+.++.+|+...|+.. ..+.+.+.+.+. |+.++++...+.. .....|... ..+
T Consensus 79 avK~~-~~~~~~~~l~~~~~~~~~iv~lqNG~~-~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~ 156 (313)
T PRK06249 79 GLKTT-ANALLAPLIPQVAAPDAKVLLLQNGLG-VEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHSG 156 (313)
T ss_pred EecCC-ChHhHHHHHhhhcCCCCEEEEecCCCC-cHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCCC
Confidence 99996 678888999999988889999988863 333444444332 3344444333221 111122211 122
Q ss_pred CC-----HHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhh---------------------HHHhHhhHHH
Q 010637 150 GS-----FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNG---------------------IEYGDMQLIS 203 (505)
Q Consensus 150 g~-----~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~---------------------i~~~~~~~i~ 203 (505)
.+ .+..+.+..+|+..+ ..+....+.-..-+.|++.|. .......++.
T Consensus 157 ~~~~~~~~~~~~~l~~~l~~ag------~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~ 230 (313)
T PRK06249 157 PAADDGITARVEEGAALFRAAG------IDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMA 230 (313)
T ss_pred CcccchHHHHHHHHHHHHHhCC------CCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHH
Confidence 23 355666777888777 334444444555555655442 2334566789
Q ss_pred HHHHHHHHhCCCC--HHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCC
Q 010637 204 EAYDVLKHVGGLS--NAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSV 281 (505)
Q Consensus 204 Ea~~l~~~~g~l~--~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gv 281 (505)
|++.++++.| ++ .+.+.++++. ..... ....++..++...+ ...+|.+.. +.++.|+++|+
T Consensus 231 E~~~va~a~G-i~~~~~~~~~~~~~-~~~~~-~~~sSM~qD~~~gr-----~tEid~i~G---------~vv~~a~~~Gi 293 (313)
T PRK06249 231 EVIQGAAACG-HTLPEGYADHMLAV-TERMP-DYRPSMYHDFEEGR-----PLELEAIYA---------NPLAAARAAGC 293 (313)
T ss_pred HHHHHHHhcC-CCCChhHHHHHHHH-hhcCC-CCCChHHHHHHCCC-----cccHHHHhh---------HHHHHHHHhCC
Confidence 9999999988 76 3334333332 12111 11233444554432 247888765 57999999999
Q ss_pred CcchHHH
Q 010637 282 AAPTIAA 288 (505)
Q Consensus 282 p~p~i~~ 288 (505)
|+|+...
T Consensus 294 ~~P~~~~ 300 (313)
T PRK06249 294 AMPRVEM 300 (313)
T ss_pred CCcHHHH
Confidence 9998775
No 77
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.50 E-value=2.9e-13 Score=127.16 Aligned_cols=149 Identities=20% Similarity=0.241 Sum_probs=100.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhh---------------cccCCCCeeeeCCHHHHHhhcC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA---------------HREGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~---------------~~~g~~~i~~~~s~~e~v~~l~ 71 (505)
|||+|||+|.+|..+|..|+++||+|++||.++++++.+.+.. ...| +++.+++.++.+..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~--~l~~t~~~~~ai~~-- 76 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAG--RLRATTDIEEAIKD-- 76 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTT--SEEEESEHHHHHHH--
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccc--cchhhhhhhhhhhc--
Confidence 6899999999999999999999999999999999988766421 1112 67888999998887
Q ss_pred CCcEEEEEcCCC---------chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHH-HHHHCC-----CeEEeCCCC--
Q 010637 72 RPRSVIILVKAG---------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH-EASQKG-----LLYLGMGVS-- 134 (505)
Q Consensus 72 ~advIil~vp~~---------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~-~l~~~g-----i~~i~~pvs-- 134 (505)
+|++|+|||.+ ..++++++.+.+.+.++++||--||..|.+++++.. .+++.+ +++.-+|-.
T Consensus 77 -adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~ 155 (185)
T PF03721_consen 77 -ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLR 155 (185)
T ss_dssp --SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------
T ss_pred -cceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccC
Confidence 99999999864 347888899999999999999999999999996654 444332 355556622
Q ss_pred -CCHH-HhhcCCccccCCCHHHHH-HHHH
Q 010637 135 -GGEE-GARHGPSLMPGGSFEAYN-NIRD 160 (505)
Q Consensus 135 -Gg~~-~a~~G~~im~gg~~ea~~-~v~~ 160 (505)
|... ..+.-+.++.|.+++..+ .+++
T Consensus 156 ~G~a~~d~~~~~rvV~G~~~~~~~~~~~~ 184 (185)
T PF03721_consen 156 EGRAIEDFRNPPRVVGGCDDESAEERLKE 184 (185)
T ss_dssp TTSHHHHHHSSSEEEEEESSHHHHHHHHH
T ss_pred CCCcchhccCCCEEEEeCCcHHHHHHHhc
Confidence 2221 222223666666555433 5554
No 78
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.45 E-value=8.3e-12 Score=122.46 Aligned_cols=195 Identities=14% Similarity=0.081 Sum_probs=129.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC---c-EEEEeC-ChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF---P-ISVYNR-TTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~---~-V~v~dr-~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
.+||+|||+|.||.+++..|+++|+ + |.+++| ++++.+.+.+.. ++..+.++++++++ +|+||+++
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---~DiViiav 74 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY------NVSTTTDWKQHVTS---VDTIVLAM 74 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc------CcEEeCChHHHHhc---CCEEEEec
Confidence 4689999999999999999998873 3 777887 467777776542 24566788888876 99999999
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE-eCCCCCCHHHhhcCC-cc--ccCCCHHHHH
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEGARHGP-SL--MPGGSFEAYN 156 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i-~~pvsGg~~~a~~G~-~i--m~gg~~ea~~ 156 (505)
|+. ..+++++++.+.++ +++||+++.+...+. +.+.+.. +..++ -+|-.. .....|. .+ -..++++..+
T Consensus 75 p~~-~~~~v~~~l~~~~~-~~~vis~~~gi~~~~--l~~~~~~-~~~v~r~~Pn~a--~~v~~g~~~~~~~~~~~~~~~~ 147 (245)
T PRK07634 75 PPS-AHEELLAELSPLLS-NQLVVTVAAGIGPSY--LEERLPK-GTPVAWIMPNTA--AEIGKSISLYTMGQSVNETHKE 147 (245)
T ss_pred CHH-HHHHHHHHHHhhcc-CCEEEEECCCCCHHH--HHHHcCC-CCeEEEECCcHH--HHHhcCCeEEeeCCCCCHHHHH
Confidence 995 78999999888775 679999988875443 3333322 22222 345222 2334443 22 2346888999
Q ss_pred HHHHHHHHHhcccCCCCceEEeCCCc--chhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 010637 157 NIRDILQKVAAQVDDGPCVTYIGEGG--SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEW 227 (505)
Q Consensus 157 ~v~~ll~~iga~~~~~~~v~~vG~~G--~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~ 227 (505)
.++.+|+.+| .++ ++.+.- ..+.+--+..++.+.++..+.++ +.+.| ++.++..+++.+.
T Consensus 148 ~v~~lf~~~G------~~~-~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~---~~~~G-l~~~~a~~~~~~~ 209 (245)
T PRK07634 148 TLQLILKGIG------TSQ-LCTEEEVHQLTAVTGSAPAFLYYFAESLIEA---TKSYG-VDEETAKHLVIQM 209 (245)
T ss_pred HHHHHHHhCC------CEE-EECHHHcchHHhhhcchHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHHH
Confidence 9999999999 333 454321 11111112223444444444444 56777 9999998887543
No 79
>PLN02256 arogenate dehydrogenase
Probab=99.45 E-value=6.8e-12 Score=126.81 Aligned_cols=165 Identities=15% Similarity=0.201 Sum_probs=119.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..++|+|||+|.||..+|..|.+.|++|.+||+++.. +...+. ++....+.++++. ..+|+||+|+|..
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~-------gv~~~~~~~e~~~--~~aDvVilavp~~- 103 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAEL-------GVSFFRDPDDFCE--EHPDVVLLCTSIL- 103 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHc-------CCeeeCCHHHHhh--CCCCEEEEecCHH-
Confidence 3468999999999999999999999999999999642 222221 2455678888763 1289999999985
Q ss_pred hHHHHHHHH-HhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC-CCCCCHHH--hhcCCcc-cc-------CCCH
Q 010637 85 PVDQTIAAL-SEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEG--ARHGPSL-MP-------GGSF 152 (505)
Q Consensus 85 ~v~~vl~~l-~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsGg~~~--a~~G~~i-m~-------gg~~ 152 (505)
.+.+++.++ .+.+.++.+|+|.+++.-.....+.+.+. .+..|+++ |+.|.+.+ ...+..+ .. +.++
T Consensus 104 ~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~-~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~ 182 (304)
T PLN02256 104 STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLP-EEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGERE 182 (304)
T ss_pred HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCC-CCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCH
Confidence 788899888 67788999999999976555554544443 35678875 77776543 2333322 22 2367
Q ss_pred HHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhh
Q 010637 153 EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFV 187 (505)
Q Consensus 153 ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~v 187 (505)
++++.++++++.+| ..++.+.+...-.++
T Consensus 183 ~~~~~l~~l~~~lG------a~v~~~~~eeHD~~v 211 (304)
T PLN02256 183 ARCERFLDIFEEEG------CRMVEMSCEEHDRYA 211 (304)
T ss_pred HHHHHHHHHHHHCC------CEEEEeCHHHHhHHH
Confidence 88999999999999 567777765444443
No 80
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.44 E-value=2.7e-12 Score=127.64 Aligned_cols=167 Identities=17% Similarity=0.223 Sum_probs=119.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCee--eeCCH-HHHHhhcCCCcEEEEEcC
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLT--GHYTP-RDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~--~~~s~-~e~v~~l~~advIil~vp 81 (505)
++++|+|+|+|.||..+|+.|.++|+.|.+++++............ ++. ...+. .+.+ ..+|+||++||
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-----gv~d~~~~~~~~~~~---~~aD~VivavP 73 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-----GVIDELTVAGLAEAA---AEADLVIVAVP 73 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-----Ccccccccchhhhhc---ccCCEEEEecc
Confidence 3578999999999999999999999999877766654332222211 111 11222 2333 34899999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC-CCCCCH--HHhhcCC--ccccCC--CHHH
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGE--EGARHGP--SLMPGG--SFEA 154 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsGg~--~~a~~G~--~im~gg--~~ea 154 (505)
-. .+..+++++.|.+++|.+|+|.++..-...+...+...+.. +|++. |+.|.+ ..-..+. .+.++. +.+.
T Consensus 74 i~-~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~ 151 (279)
T COG0287 74 IE-ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEW 151 (279)
T ss_pred HH-HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHH
Confidence 95 78999999999999999999999998777766666655545 89987 777763 3334455 334443 4678
Q ss_pred HHHHHHHHHHHhcccCCCCceEEeCCCcchhhh
Q 010637 155 YNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFV 187 (505)
Q Consensus 155 ~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~v 187 (505)
++++..+++.+| ..++++.+.-.-..+
T Consensus 152 ~~~~~~~~~~~g------a~~v~~~~eeHD~~~ 178 (279)
T COG0287 152 VEEVKRLWEALG------ARLVEMDAEEHDRVM 178 (279)
T ss_pred HHHHHHHHHHcC------CEEEEcChHHHhHHH
Confidence 999999999999 467787765444444
No 81
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.44 E-value=2.1e-12 Score=144.76 Aligned_cols=192 Identities=13% Similarity=0.214 Sum_probs=136.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHh-------hcccCC----------CCeeeeCCHHHHHh
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-------AHREGQ----------LPLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~-------~~~~g~----------~~i~~~~s~~e~v~ 68 (505)
..+|+|||+|.||..||..++.+||+|++||++++.++...+. ....|. .+++++.+++++ +
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~ 391 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGF-E 391 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh-c
Confidence 3579999999999999999999999999999999876543211 011110 057777787554 4
Q ss_pred hcCCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC----CCeEEeCC-CCCCHHHhhc
Q 010637 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMG-VSGGEEGARH 142 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~p-vsGg~~~a~~ 142 (505)
. +|+||.+||++..++.-+ .+|.+.++++.||...|++.+.+ .+++.+... |.||+.+| ...-.
T Consensus 392 ~---aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~--~la~~~~~p~r~~g~Hff~P~~~~~lV----- 461 (715)
T PRK11730 392 R---VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISIS--LLAKALKRPENFCGMHFFNPVHRMPLV----- 461 (715)
T ss_pred C---CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH--HHHhhcCCCccEEEEecCCcccccceE-----
Confidence 3 999999999998887655 78888888888887666665443 344443321 56666543 11111
Q ss_pred CCccccC--CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHH
Q 010637 143 GPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (505)
Q Consensus 143 G~~im~g--g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i 220 (505)
-++.| .++++++.+..+++.++ +.++.+. +..|.. .|.+.+. +++|++.++++ | .++++|
T Consensus 462 --Evv~g~~T~~~~~~~~~~~~~~lg------k~pv~v~-d~pGfv----~nRi~~~---~~~ea~~lv~~-G-a~~e~I 523 (715)
T PRK11730 462 --EVIRGEKTSDETIATVVAYASKMG------KTPIVVN-DCPGFF----VNRVLFP---YFAGFSQLLRD-G-ADFRQI 523 (715)
T ss_pred --EeeCCCCCCHHHHHHHHHHHHHhC------CceEEec-CcCchh----HHHHHHH---HHHHHHHHHHc-C-CCHHHH
Confidence 23343 48899999999999999 8888885 455654 4665444 55899999875 5 899999
Q ss_pred HHHHHH
Q 010637 221 AEIFDE 226 (505)
Q Consensus 221 ~~v~~~ 226 (505)
+.++..
T Consensus 524 D~a~~~ 529 (715)
T PRK11730 524 DKVMEK 529 (715)
T ss_pred HHHHHh
Confidence 999753
No 82
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.43 E-value=1.5e-12 Score=125.87 Aligned_cols=162 Identities=18% Similarity=0.163 Sum_probs=111.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcc----cCCCCee-eeCCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR----EGQLPLT-GHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~----~g~~~i~-~~~s~~e~v~~l~~advIil~v 80 (505)
|||+||| +|.||..|+..|+++||+|.+++|++++++.+.+.... .| .... ...+..+.++. +|+||++|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g-~~~~~~~~~~~ea~~~---aDvVilav 76 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGG-SDIKVTGADNAEAAKR---ADVVILAV 76 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccC-CCceEEEeChHHHHhc---CCEEEEEC
Confidence 5899997 99999999999999999999999999998877653211 00 0011 22355666666 99999999
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCCCCchh---------------HHHHHHHHHHCCCeEEeC-C-----CCCCHHH
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN---------------TERRIHEASQKGLLYLGM-G-----VSGGEEG 139 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~---------------t~~~~~~l~~~gi~~i~~-p-----vsGg~~~ 139 (505)
|.. .+.+++.++.+.+. +++|||+++....+ ++.+++.+.. +.+++.+ + +..+. .
T Consensus 77 p~~-~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~-~~~VVka~~~~~a~~~~~~-~ 152 (219)
T TIGR01915 77 PWD-HVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE-TSRVVAAFHNLSAVLLQDV-D 152 (219)
T ss_pred CHH-HHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC-CCeEeeccccCCHHHhcCC-C
Confidence 995 78888888877665 58999999987641 1334444432 1334432 2 22221 1
Q ss_pred hhcCC-ccccCCCHHHHHHHHHHHHHH-hcccCCCCceEEeCCCc
Q 010637 140 ARHGP-SLMPGGSFEAYNNIRDILQKV-AAQVDDGPCVTYIGEGG 182 (505)
Q Consensus 140 a~~G~-~im~gg~~ea~~~v~~ll~~i-ga~~~~~~~v~~vG~~G 182 (505)
...+. .+++|.++++.+.+..|.+.+ | -.++.+|+..
T Consensus 153 ~~~~~~~~v~Gdd~~ak~~v~~L~~~~~G------~~~vd~G~l~ 191 (219)
T TIGR01915 153 DEVDCDVLVCGDDEEAKEVVAELAGRIDG------LRALDAGPLE 191 (219)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHhcCC------CCcccCCchh
Confidence 11233 666777788889999999999 8 5678888743
No 83
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.42 E-value=2.5e-12 Score=144.27 Aligned_cols=193 Identities=15% Similarity=0.224 Sum_probs=137.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhh-------cccCCC----------CeeeeCCHHHHHh
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HREGQL----------PLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~~----------~i~~~~s~~e~v~ 68 (505)
..+|+|||+|.||..||..++.+|++|.++|++++.+++..+.. ...|.+ +++++.+++++ +
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~ 413 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGF-K 413 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh-c
Confidence 35799999999999999999999999999999998765533211 011100 57777787654 3
Q ss_pred hcCCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHH----CCCeEEeCCC-CCCHHHhhc
Q 010637 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLGMGV-SGGEEGARH 142 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~----~gi~~i~~pv-sGg~~~a~~ 142 (505)
+ +|+||.+||++..++.-+ .+|.+.++++.|+...|++.+.+ +++..+.. .|+||+..+- +.-.
T Consensus 414 ~---aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~--~la~~~~~p~r~ig~Hff~P~~~m~Lv----- 483 (737)
T TIGR02441 414 N---ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIK--DIAAVSSRPEKVIGMHYFSPVDKMQLL----- 483 (737)
T ss_pred c---CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH--HHHhhcCCccceEEEeccCCcccCceE-----
Confidence 3 999999999998887655 78888888888887666555433 44444432 2667765431 1111
Q ss_pred CCcccc--CCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHH
Q 010637 143 GPSLMP--GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (505)
Q Consensus 143 G~~im~--gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i 220 (505)
-++. ..++++++.+..++..++ +.++.+++ ..|+++ |.+. ...+.|++.++.+ | +++++|
T Consensus 484 --Evv~g~~Ts~~~~~~~~~~~~~lg------k~pv~v~d-~pGFi~----NRi~---~~~~~ea~~lv~e-G-v~~~~I 545 (737)
T TIGR02441 484 --EIITHDGTSKDTLASAVAVGLKQG------KVVIVVKD-GPGFYT----TRCL---GPMLAEVIRLLQE-G-VDPKKL 545 (737)
T ss_pred --EEeCCCCCCHHHHHHHHHHHHHCC------CeEEEECC-cCCchH----HHHH---HHHHHHHHHHHHc-C-CCHHHH
Confidence 1333 358899999999999999 88888854 556554 5554 4566999999876 5 899999
Q ss_pred HHHHHHh
Q 010637 221 AEIFDEW 227 (505)
Q Consensus 221 ~~v~~~~ 227 (505)
+.++..+
T Consensus 546 D~a~~~~ 552 (737)
T TIGR02441 546 DKLTTKF 552 (737)
T ss_pred HHHHHHc
Confidence 9997543
No 84
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.42 E-value=4.5e-11 Score=119.67 Aligned_cols=189 Identities=15% Similarity=0.151 Sum_probs=125.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC----CcEEEEeCCh-HHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG----FPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G----~~V~v~dr~~-~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|++|+|||+|.||.+|+..|.++| ++|.+|+|++ ++.+.+..... .+..+.+..++++. +|+||+|+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~-----~~~~~~~~~e~~~~---aDvVilav 72 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYP-----TVELADNEAEIFTK---CDHSFICV 72 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcC-----CeEEeCCHHHHHhh---CCEEEEec
Confidence 368999999999999999999998 7899999865 44455443321 23456788888776 99999999
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE-eCCCCCCHHHhhcCCc-cccC--CCHHHHH
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEGARHGPS-LMPG--GSFEAYN 156 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i-~~pvsGg~~~a~~G~~-im~g--g~~ea~~ 156 (505)
|+ ..+.+++.++.+.+.++.+||...++.... ++.+.+.. ..++ -+|-. +.....|.+ +..+ -+++..+
T Consensus 73 pp-~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~--~l~~~~~~--~~vvR~MPN~--~~~~g~g~t~~~~~~~~~~~~~~ 145 (277)
T PRK06928 73 PP-LAVLPLLKDCAPVLTPDRHVVSIAAGVSLD--DLLEITPG--LQVSRLIPSL--TSAVGVGTSLVAHAETVNEANKS 145 (277)
T ss_pred CH-HHHHHHHHHHHhhcCCCCEEEEECCCCCHH--HHHHHcCC--CCEEEEeCcc--HHHHhhhcEEEecCCCCCHHHHH
Confidence 98 478999999999888888999988886443 45554432 1232 24433 233456663 3333 2566778
Q ss_pred HHHHHHHHHhcccCCCCceEEeCCC---------cchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010637 157 NIRDILQKVAAQVDDGPCVTYIGEG---------GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDE 226 (505)
Q Consensus 157 ~v~~ll~~iga~~~~~~~v~~vG~~---------G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~ 226 (505)
.++.+|+.+|. ++++.+. |+|- ++.+.++..+.++ +.+.||++.++..++..+
T Consensus 146 ~v~~l~~~~G~-------~~~v~E~~~d~~tal~gsgP-------A~~~~~~~al~~a---~~~~ggl~~~~a~~l~~~ 207 (277)
T PRK06928 146 RLEETLSHFSH-------VMTIREENMDIASNLTSSSP-------GFIAAIFEEFAEA---AVRNSSLSDEEAFQFLNF 207 (277)
T ss_pred HHHHHHHhCCC-------EEEEchhhCceeeeeecCHH-------HHHHHHHHHHHHH---HHHhCCCCHHHHHHHHHH
Confidence 89999999993 3343221 2221 1222233333333 334434999998888753
No 85
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.42 E-value=4.6e-12 Score=141.71 Aligned_cols=191 Identities=17% Similarity=0.239 Sum_probs=134.8
Q ss_pred CCcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChHHHHHHHHhh-------cccCC----------CCeeeeCCHHHHH
Q 010637 6 LSRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSKVDETLDRA-------HREGQ----------LPLTGHYTPRDFV 67 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La-~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~----------~~i~~~~s~~e~v 67 (505)
..+|+|||+|.||..||..++ .+|++|++||++++.++...+.. ...|. .+++++++++++
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 382 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGF- 382 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHh-
Confidence 357999999999999999998 58999999999998654432210 00000 057777787543
Q ss_pred hhcCCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC----CCeEEeCCCC-CCHHHhh
Q 010637 68 LSIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVS-GGEEGAR 141 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvs-Gg~~~a~ 141 (505)
+. +|+||.+||++..++.-+ .+|.+.++++.|+...|++.+.+ ++++.+... |+||+.+|-. .-.
T Consensus 383 ~~---adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~--~la~~~~~p~r~~g~HffnP~~~~~lV---- 453 (699)
T TIGR02440 383 KD---VDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIG--QIAAAASRPENVIGLHYFSPVEKMPLV---- 453 (699)
T ss_pred cc---CCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHH--HHHHhcCCcccEEEEecCCccccCceE----
Confidence 33 999999999998887554 78888888887777665555433 344444321 6677665421 111
Q ss_pred cCCccccC--CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHH
Q 010637 142 HGPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (505)
Q Consensus 142 ~G~~im~g--g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~ 219 (505)
-++.| .++++++.+..+++.++ +.++.+. +..|+.+ |.+. ..+++|++.++++ | +++++
T Consensus 454 ---Evv~g~~T~~~~~~~~~~~~~~~g------k~pv~v~-d~pGfi~----nRl~---~~~~~Ea~~l~~~-G-~~~~d 514 (699)
T TIGR02440 454 ---EVIPHAGTSEQTIATTVALAKKQG------KTPIVVA-DKAGFYV----NRIL---APYMNEAARLLLE-G-EPVEH 514 (699)
T ss_pred ---EEeCCCCCCHHHHHHHHHHHHHcC------CeEEEEc-cccchHH----HHHH---HHHHHHHHHHHHC-C-CCHHH
Confidence 23333 58899999999999999 8888885 4566554 5554 4566999999874 5 79999
Q ss_pred HHHHHH
Q 010637 220 LAEIFD 225 (505)
Q Consensus 220 i~~v~~ 225 (505)
|+.++.
T Consensus 515 ID~a~~ 520 (699)
T TIGR02440 515 IDKALV 520 (699)
T ss_pred HHHHHH
Confidence 999974
No 86
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.42 E-value=7e-11 Score=116.11 Aligned_cols=194 Identities=19% Similarity=0.182 Sum_probs=133.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC----CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG----FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G----~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
+++|||||.|+||.+|+..|.++| .+|++.||++++.+.+.+... +..+++..++++. +|+||++|+
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g------~~~~~~~~~~~~~---advv~LavK 71 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYG------VVTTTDNQEAVEE---ADVVFLAVK 71 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcC------CcccCcHHHHHhh---CCEEEEEeC
Confidence 468999999999999999999999 689999999999887766542 3347778888887 999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe-CCCCCCHHHhhcCC-ccccC--CCHHHHHH
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGP-SLMPG--GSFEAYNN 157 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsGg~~~a~~G~-~im~g--g~~ea~~~ 157 (505)
+ ..+.+++..+.+ ..++++||....+.+ ...+...+. +..++- +|-. +.....|. .+..+ .+++..+.
T Consensus 72 P-q~~~~vl~~l~~-~~~~~lvISiaAGv~--~~~l~~~l~--~~~vvR~MPNt--~a~vg~g~t~i~~~~~~~~~~~~~ 143 (266)
T COG0345 72 P-QDLEEVLSKLKP-LTKDKLVISIAAGVS--IETLERLLG--GLRVVRVMPNT--PALVGAGVTAISANANVSEEDKAF 143 (266)
T ss_pred h-HhHHHHHHHhhc-ccCCCEEEEEeCCCC--HHHHHHHcC--CCceEEeCCCh--HHHHcCcceeeecCccCCHHHHHH
Confidence 9 589999999998 788999999877764 344455544 334443 3533 23334555 33333 36777889
Q ss_pred HHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHH-HHhCCCCHHHHHHHHHH
Q 010637 158 IRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVL-KHVGGLSNAELAEIFDE 226 (505)
Q Consensus 158 v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~-~~~g~l~~~~i~~v~~~ 226 (505)
+..+|+.+| .++++.+.---.+.-+. +-.-+.+..+.|++.-+ .+.| ++.++..++..+
T Consensus 144 v~~l~~~~G-------~v~~v~E~~~da~Tais--GSgPAyv~~~iEal~~agv~~G-l~~~~A~~l~~~ 203 (266)
T COG0345 144 VEALLSAVG-------KVVEVEESLMDAVTALS--GSGPAYVFLFIEALADAGVRLG-LPREEARELAAQ 203 (266)
T ss_pred HHHHHHhcC-------CeEEechHHhhHHHHHh--cCCHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 999999999 56677642111111111 11111233334444443 4566 999998888643
No 87
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.42 E-value=4e-12 Score=142.27 Aligned_cols=191 Identities=16% Similarity=0.248 Sum_probs=137.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhh-------cccCCC----------CeeeeCCHHHHHh
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HREGQL----------PLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~~----------~i~~~~s~~e~v~ 68 (505)
..+|+|||+|.||..||..++.+|++|+++|++++.+++..+.. ...|.+ +++++.+++++ +
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~ 391 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGF-D 391 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh-c
Confidence 35799999999999999999999999999999998765433211 111100 57777777554 4
Q ss_pred hcCCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHH--C--CCeEEeCC-CCCCHHHhhc
Q 010637 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ--K--GLLYLGMG-VSGGEEGARH 142 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~--~--gi~~i~~p-vsGg~~~a~~ 142 (505)
. +|+||.+||++..++.-+ .+|.+.++++.|+...|++.+.+ +++..+.. + |+||+.+| +..-.
T Consensus 392 ~---aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~--~ia~~~~~p~r~ig~Hff~P~~~~~lv----- 461 (714)
T TIGR02437 392 N---VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISIS--LLAKALKRPENFCGMHFFNPVHRMPLV----- 461 (714)
T ss_pred C---CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHhhcCCcccEEEEecCCCcccCceE-----
Confidence 3 999999999998887555 78888888888887766665443 34444432 2 66776543 22111
Q ss_pred CCccccC--CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHH
Q 010637 143 GPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (505)
Q Consensus 143 G~~im~g--g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i 220 (505)
-++.| .++++++.+..++..++ +.++.+.+ ..|++ .|.+.. ..+.|++.++++ | .++++|
T Consensus 462 --Evv~g~~Ts~~~~~~~~~~~~~lg------k~pv~v~d-~pGfi----~NRl~~---~~~~ea~~l~~e-G-~~~~~I 523 (714)
T TIGR02437 462 --EVIRGEKSSDETIATVVAYASKMG------KTPIVVND-CPGFF----VNRVLF---PYFGGFSKLLRD-G-ADFVRI 523 (714)
T ss_pred --eecCCCCCCHHHHHHHHHHHHHcC------CEEEEeCC-cccch----HHHHHH---HHHHHHHHHHHC-C-CCHHHH
Confidence 13333 47899999999999999 88888864 56655 466644 455999999875 5 899999
Q ss_pred HHHHH
Q 010637 221 AEIFD 225 (505)
Q Consensus 221 ~~v~~ 225 (505)
+.++.
T Consensus 524 D~a~~ 528 (714)
T TIGR02437 524 DKVME 528 (714)
T ss_pred HHHHH
Confidence 99974
No 88
>PLN02712 arogenate dehydrogenase
Probab=99.40 E-value=9.3e-12 Score=138.04 Aligned_cols=159 Identities=14% Similarity=0.192 Sum_probs=114.7
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
+.++|||||+|.||..+|..|.+.|++|.+|||+... +...+. ++..+.++++++.. .+|+||+|||. .
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~-------Gv~~~~~~~el~~~--~aDvVILavP~-~ 436 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKL-------GVSYFSDADDLCEE--HPEVILLCTSI-L 436 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHc-------CCeEeCCHHHHHhc--CCCEEEECCCh-H
Confidence 4578999999999999999999999999999999653 333322 24566788887652 28999999998 4
Q ss_pred hHHHHHHHHHh-cCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE-eCCCCCCHHHhhcCC---c-----cccCCCHHH
Q 010637 85 PVDQTIAALSE-HMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEGARHGP---S-----LMPGGSFEA 154 (505)
Q Consensus 85 ~v~~vl~~l~~-~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i-~~pvsGg~~~a~~G~---~-----im~gg~~ea 154 (505)
.+..+++++.+ .+++|.+|+|++++.. ...+..+.+...+..|+ ..|+.|.+.+ ..|. . .+++++.+.
T Consensus 437 ~~~~vi~~l~~~~lk~g~ivvDv~SvK~-~~~~~~~~~l~~~~~~v~~HPm~G~e~~-~~G~~~~~~lf~~~~v~~~~~~ 514 (667)
T PLN02712 437 STEKVLKSLPFQRLKRSTLFVDVLSVKE-FPRNLFLQHLPQDFDILCTHPMFGPESG-KNGWNNLAFVFDKVRIGSDDRR 514 (667)
T ss_pred HHHHHHHHHHHhcCCCCcEEEECCCccH-HHHHHHHHhccCCCceEeeCCCCCcccc-ccchhhhhhhccCcEeCCCcch
Confidence 78999988875 6788999999999873 33344444444577888 5799987754 2331 1 334555554
Q ss_pred HH---HHHHHHHHHhcccCCCCceEEeCCCc
Q 010637 155 YN---NIRDILQKVAAQVDDGPCVTYIGEGG 182 (505)
Q Consensus 155 ~~---~v~~ll~~iga~~~~~~~v~~vG~~G 182 (505)
.+ .+..+++.+| .+++.+.+..
T Consensus 515 ~~~~~~l~~l~~~lG------a~vv~ms~ee 539 (667)
T PLN02712 515 VSRCDSFLDIFAREG------CRMVEMSCAE 539 (667)
T ss_pred HHHHHHHHHHHHHcC------CEEEEeCHHH
Confidence 44 4558888888 5677776643
No 89
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.39 E-value=3.6e-12 Score=119.61 Aligned_cols=166 Identities=16% Similarity=0.145 Sum_probs=112.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
||+|+|+|.|+||.+||++|++.||+|.+-+|+.++..+........ .+ ...+++++++. +|+||++||-. .
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~---~i-~~~~~~dA~~~---aDVVvLAVP~~-a 72 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGP---LI-TGGSNEDAAAL---ADVVVLAVPFE-A 72 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhcc---cc-ccCChHHHHhc---CCEEEEeccHH-H
Confidence 47899999999999999999999999999966655433333322211 23 34577777777 99999999995 7
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCc---------------hhHHHHHHHHHHC----CCeEEeCCCCCCHHHhhcCC-c
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEWY---------------LNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-S 145 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~---------------~~t~~~~~~l~~~----gi~~i~~pvsGg~~~a~~G~-~ 145 (505)
+..++.++...+. |+||||++|..+ ..++.+++.++.. .++-+.+...-......... .
T Consensus 73 ~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~~~~v 151 (211)
T COG2085 73 IPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGGRRDV 151 (211)
T ss_pred HHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcCCceeE
Confidence 8889999988775 999999999631 1123333333321 22223322211111111222 6
Q ss_pred cccCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhh
Q 010637 146 LMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNF 186 (505)
Q Consensus 146 im~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~ 186 (505)
+++|.|.++.+.+.++.+.+| -..+-+|+...++.
T Consensus 152 ~vagDD~~Ak~~v~~L~~~iG------~~~ld~G~L~~a~~ 186 (211)
T COG2085 152 LVAGDDAEAKAVVAELAEDIG------FRPLDAGPLENARI 186 (211)
T ss_pred EEecCcHHHHHHHHHHHHhcC------cceeeccccccccc
Confidence 677888899999999999999 66778887554443
No 90
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.39 E-value=7.2e-12 Score=140.47 Aligned_cols=192 Identities=18% Similarity=0.252 Sum_probs=135.1
Q ss_pred CCcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChHHHHHHHHh-------hcccCC----------CCeeeeCCHHHHH
Q 010637 6 LSRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSKVDETLDR-------AHREGQ----------LPLTGHYTPRDFV 67 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La-~~G~~V~v~dr~~~~~~~l~~~-------~~~~g~----------~~i~~~~s~~e~v 67 (505)
..+|+|||+|.||..||..++ .+|++|.+||++++.++...+. ....|. .++++++++++ +
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~ 387 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRG-F 387 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHH-h
Confidence 357999999999999999999 8899999999999865543211 000000 05777777754 3
Q ss_pred hhcCCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC----CCeEEeCCCCCCHHHhhc
Q 010637 68 LSIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARH 142 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsGg~~~a~~ 142 (505)
++ +|+||.+||+...++.-+ .+|.+.++++.|+...|++.+.+ .+++.+... |+||+..|-.-.
T Consensus 388 ~~---aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~--~la~~~~~p~r~ig~Hff~P~~~~~------ 456 (708)
T PRK11154 388 KH---ADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIG--QIAAAAARPEQVIGLHYFSPVEKMP------ 456 (708)
T ss_pred cc---CCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHHhcCcccceEEEecCCccccCc------
Confidence 44 999999999998887555 78888888888887766665543 344433321 566665431110
Q ss_pred CCccccC--CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHH
Q 010637 143 GPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (505)
Q Consensus 143 G~~im~g--g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i 220 (505)
-.-+++| .++++.+.+..+++.++ +.++.+. +..|..+ |.+ ...+++|++.++++ | ++++++
T Consensus 457 lVEvv~g~~Ts~~~~~~~~~~~~~~g------k~pv~v~-d~pGfi~----nRl---~~~~~~EA~~lv~e-G-v~~~dI 520 (708)
T PRK11154 457 LVEVIPHAKTSAETIATTVALAKKQG------KTPIVVR-DGAGFYV----NRI---LAPYINEAARLLLE-G-EPIEHI 520 (708)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHcC------CceEEEe-ccCcHHH----HHH---HHHHHHHHHHHHHc-C-CCHHHH
Confidence 0023333 58899999999999999 7788885 4556554 554 44556999999886 5 899999
Q ss_pred HHHHH
Q 010637 221 AEIFD 225 (505)
Q Consensus 221 ~~v~~ 225 (505)
+.++.
T Consensus 521 D~a~~ 525 (708)
T PRK11154 521 DAALV 525 (708)
T ss_pred HHHHH
Confidence 99974
No 91
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.39 E-value=2.2e-12 Score=120.76 Aligned_cols=153 Identities=18% Similarity=0.333 Sum_probs=101.2
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhc-------ccCCC----------CeeeeCCHHHHHhhc
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-------REGQL----------PLTGHYTPRDFVLSI 70 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~~----------~i~~~~s~~e~v~~l 70 (505)
+|+|||+|.||..+|..++.+|++|.+||++++.++...+... ..|.+ ++...+++++++ +
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~- 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D- 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T-
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h-
Confidence 6999999999999999999999999999999987654432211 01111 678889999888 4
Q ss_pred CCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHH--HC--CCeEEeCCCCCCHHHhhcCCc
Q 010637 71 QRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEAS--QK--GLLYLGMGVSGGEEGARHGPS 145 (505)
Q Consensus 71 ~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~--~~--gi~~i~~pvsGg~~~a~~G~~ 145 (505)
+|+||.++|+...++.-+ .+|.+.++++.+|...|++.+.. +++..+. ++ |+||+.+|-.-... -
T Consensus 79 --adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~--~la~~~~~p~R~ig~Hf~~P~~~~~lV------E 148 (180)
T PF02737_consen 79 --ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSIS--ELAAALSRPERFIGMHFFNPPHLMPLV------E 148 (180)
T ss_dssp --ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HH--HHHTTSSTGGGEEEEEE-SSTTT--EE------E
T ss_pred --hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHH--HHHhccCcCceEEEEecccccccCceE------E
Confidence 999999999998887655 78888888888888776666433 3443332 22 67777644211000 1
Q ss_pred cccC--CCHHHHHHHHHHHHHHhcccCCCCceEEe
Q 010637 146 LMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYI 178 (505)
Q Consensus 146 im~g--g~~ea~~~v~~ll~~iga~~~~~~~v~~v 178 (505)
+++| .++++++.+..+++.++ +.++.+
T Consensus 149 vv~~~~T~~~~~~~~~~~~~~~g------k~pv~v 177 (180)
T PF02737_consen 149 VVPGPKTSPETVDRVRALLRSLG------KTPVVV 177 (180)
T ss_dssp EEE-TTS-HHHHHHHHHHHHHTT-------EEEEE
T ss_pred EeCCCCCCHHHHHHHHHHHHHCC------CEEEEe
Confidence 3333 58899999999999999 777766
No 92
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.39 E-value=2e-12 Score=108.11 Aligned_cols=90 Identities=20% Similarity=0.332 Sum_probs=77.0
Q ss_pred cEEEEcccHHHHHHHHHHHhCC---CcEEEE-eCChHHHHHHHHhhcccCCCCeeeeC-CHHHHHhhcCCCcEEEEEcCC
Q 010637 8 RIGLAGLAVMGQNLALNVAEKG---FPISVY-NRTTSKVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G---~~V~v~-dr~~~~~~~l~~~~~~~g~~~i~~~~-s~~e~v~~l~~advIil~vp~ 82 (505)
||||||.|.||.+|+..|.++| ++|.++ +|++++.+++.++.. +.... +..++++. +|+||++||+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~------~~~~~~~~~~~~~~---advvilav~p 71 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG------VQATADDNEEAAQE---ADVVILAVKP 71 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT------TEEESEEHHHHHHH---TSEEEE-S-G
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc------cccccCChHHhhcc---CCEEEEEECH
Confidence 6999999999999999999999 999955 999999999887642 34455 89999998 9999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
. .+.+++.++ +...++++|||..+
T Consensus 72 ~-~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 72 Q-QLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp G-GHHHHHHHH-HHHHTTSEEEEEST
T ss_pred H-HHHHHHHHH-hhccCCCEEEEeCC
Confidence 5 789999999 77789999999875
No 93
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.37 E-value=1.5e-11 Score=124.82 Aligned_cols=256 Identities=14% Similarity=0.104 Sum_probs=149.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhh-cc---cCCC-Ceee-eCCHHHHHhhcCCCcEEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-HR---EGQL-PLTG-HYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~-~~---~g~~-~i~~-~~s~~e~v~~l~~advIil~ 79 (505)
.|||+|||+|.||.-+|..|++.|++|++++|+.++++.+.+++ .. .|.. .... ..+. +.+...|+||++
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~----~~~~~~D~viv~ 77 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETA----DAAEPIHRLLLA 77 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCc----ccccccCEEEEE
Confidence 46899999999999999999999999999999988888777542 11 0100 0000 1111 112347999999
Q ss_pred cCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC----CCeEEeCCCCCCHHHhhcCC-ccccCC-CHH
Q 010637 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-SLMPGG-SFE 153 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsGg~~~a~~G~-~im~gg-~~e 153 (505)
|+.. ++++++..+.+.+.++.+|+-.-|+.... +.+.+.+... |+.++++...+.-.-...|. .+..|. +.+
T Consensus 78 vK~~-~~~~al~~l~~~l~~~t~vv~lQNGv~~~-e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~~~~ 155 (305)
T PRK05708 78 CKAY-DAEPAVASLAHRLAPGAELLLLQNGLGSQ-DAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTWLGDPRNP 155 (305)
T ss_pred CCHH-hHHHHHHHHHhhCCCCCEEEEEeCCCCCH-HHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEEEcCCCCc
Confidence 9996 68889999999999999999999987432 2344444322 22233322111100001111 122332 223
Q ss_pred HHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHH------------------HhHhhHHHHHHHHHHHhCCC
Q 010637 154 AYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIE------------------YGDMQLISEAYDVLKHVGGL 215 (505)
Q Consensus 154 a~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~------------------~~~~~~i~Ea~~l~~~~g~l 215 (505)
..+++.++|..-+- .+.+..+.-...+-|++-|... ..+.+++.|++.++++.| +
T Consensus 156 ~~~~l~~~l~~ag~------~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G-~ 228 (305)
T PRK05708 156 TAPAWLDDLREAGI------PHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCG-Q 228 (305)
T ss_pred chHHHHHHHHhcCC------CCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcC-C
Confidence 34556666665441 2222222333445555544210 134577899999999988 6
Q ss_pred C--HHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHH
Q 010637 216 S--NAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (505)
Q Consensus 216 ~--~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~a 289 (505)
+ .+.+.+.+......... .-.++..++...+ ...+|.+.. ..++.|+++|+|+|.....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~-~~sSM~qD~~~gR-----~tEid~i~G---------~vvr~a~~~Gv~~P~~~~l 289 (305)
T PRK05708 229 PAAAANLHEEVQRVIQATAA-NYSSMYQDVRAGR-----RTEISYLLG---------YACRAADRHGLPLPRLQHL 289 (305)
T ss_pred CccHHHHHHHHHHHHHhccC-CCcHHHHHHHcCC-----ceeehhhhh---------HHHHHHHHcCCCCchHHHH
Confidence 5 33343333221111111 1233344554432 246777765 4789999999999988753
No 94
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.36 E-value=4.3e-12 Score=116.24 Aligned_cols=99 Identities=17% Similarity=0.319 Sum_probs=82.4
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCC-------CeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQL-------PLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~-------~i~~~~s~~e~v~~l~~advIil~v 80 (505)
||+|||.|.||.++|..|+++||+|++|.|+++.++.+.+.+.+...+ ++..+++++++++. +|+||++|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~---ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALED---ADIIIIAV 77 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT----SEEEE-S
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCc---ccEEEecc
Confidence 699999999999999999999999999999999999888765421101 57788999999887 99999999
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
|.. ..+++++.+.++++++.+||.++.+.
T Consensus 78 Ps~-~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 78 PSQ-AHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -GG-GHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cHH-HHHHHHHHHhhccCCCCEEEEecCCc
Confidence 995 78999999999999999999988776
No 95
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=99.33 E-value=5.9e-12 Score=110.33 Aligned_cols=104 Identities=20% Similarity=0.295 Sum_probs=87.4
Q ss_pred cchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhh-ccccccCCCchhHHHHH
Q 010637 182 GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI-FKVKDEYGEGELVDKIL 260 (505)
Q Consensus 182 G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~i-l~~~~~~~~~~~l~~i~ 260 (505)
|+|+.+|+++|.+.++.+.+++|++.++++.| +|++.+.+++ +.+.+.|+.++...+. +.. ++|.+.|.++.+.
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~G-ld~~~~~~vl---~~~~~~s~~~~~~~~~~~~~-~~~~~~f~l~~~~ 75 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAG-LDPEQLLDVL---SAGSGGSWMLKNRAPRMILN-GDFDPGFSLDLAR 75 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S-HHHHHHHH---HTSTTHBHHHHHHHHHHHHT-TTTCSSSBHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHH---ccCCcCchHHHhhhhhhhhc-ccCCccchhHhhc
Confidence 78999999999999999999999999999999 9999999998 5788899999988763 433 6788999999999
Q ss_pred hhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 010637 261 DKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (505)
Q Consensus 261 ~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~ 297 (505)
||+. .+.+.|.+.|+|+|+...+ ...|..+
T Consensus 76 KDl~------l~~~~a~~~g~~~p~~~~~-~~~~~~a 105 (122)
T PF14833_consen 76 KDLR------LALDLAKEAGVPLPLGSAA-RQLYQAA 105 (122)
T ss_dssp HHHH------HHHHHHHHTT---HHHHHH-HHHHHHH
T ss_pred cHHH------HHHHHHHHcCCCCHHHHHH-HHHHHHH
Confidence 9996 9999999999999999865 4555443
No 96
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.33 E-value=4e-11 Score=135.84 Aligned_cols=162 Identities=14% Similarity=0.166 Sum_probs=121.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G--~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|+|||+|.||.++++.|.++| ++|.+||+++++.+.+.+.+.. .....+..++++. +|+||+++|..
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~-----~~~~~~~~~~~~~---aDvVilavp~~ 74 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVI-----DRGEEDLAEAVSG---ADVIVLAVPVL 74 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCC-----CcccCCHHHHhcC---CCEEEECCCHH
Confidence 468999999999999999999999 4899999999987776654321 1134566666665 99999999985
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe-CCCCCCHH-H-------hhcCC--ccc--cCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEE-G-------ARHGP--SLM--PGG 150 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsGg~~-~-------a~~G~--~im--~gg 150 (505)
.+.++++.+.+.++++.+|+|+++........+.+.+....++|+. .|++|++. + ...+. .+. .++
T Consensus 75 -~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~ 153 (735)
T PRK14806 75 -AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET 153 (735)
T ss_pred -HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC
Confidence 7899999999988899999999998766666666655444667765 58876653 1 11232 223 336
Q ss_pred CHHHHHHHHHHHHHHhcccCCCCceEEeCCCc
Q 010637 151 SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGG 182 (505)
Q Consensus 151 ~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G 182 (505)
+++.++.++++|+.+| ..++++.+.-
T Consensus 154 ~~~~~~~~~~l~~~~G------~~~~~~~~~~ 179 (735)
T PRK14806 154 DPAALARVDRLWRAVG------ADVLHMDVAH 179 (735)
T ss_pred CHHHHHHHHHHHHHcC------CEEEEcCHHH
Confidence 7888999999999999 5677776543
No 97
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.33 E-value=4.4e-12 Score=135.32 Aligned_cols=118 Identities=17% Similarity=0.329 Sum_probs=100.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH---hcCCCceecccHHHHHHHHhcCC-CCCCCc
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARI---WKGGCIIRAVFLDRIKKAYQRNP-NLASLV 401 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~i---W~~Gciirs~lL~~i~~~~~~~~-~~~~ll 401 (505)
+.+|++||+||+|+|+.|++++|+|.+++++. ++|.+++.++ |+.| ..+|++++....++..++ ..+..+
T Consensus 182 GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~-----Gld~~~l~~vf~~~~~g-~~~S~llei~~~~l~~~d~~~~~f~ 255 (493)
T PLN02350 182 GAGNFVKMVHNGIEYGDMQLISEAYDVLKSVG-----GLSNEELAEVFAEWNKG-ELESFLIEITADIFSVKDDKGDGYL 255 (493)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHcCC-CccchHHHHHHHHHhhcCCCCCCch
Confidence 57999999999999999999999999999642 3898888877 9998 689999999888876553 223567
Q ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCChhh
Q 010637 402 VDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLPA 451 (505)
Q Consensus 402 ~~~~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~--y~~~~~~~~~~a 451 (505)
+|...++..+|+|| ||+++.|.+.|+|+|.|++++. |.++++.+|..+
T Consensus 256 l~~i~Kd~~~kGTg--~w~~~~A~~lgv~~p~i~~av~~r~~s~~k~~r~~~ 305 (493)
T PLN02350 256 VDKILDKTGMKGTG--KWTVQQAAELSVAAPTIAASLDARYLSGLKEERVAA 305 (493)
T ss_pred HHHHHhhhcccchH--HHHHHHHHHhCCCccHHHHHHHHHHHhccHHHHHHH
Confidence 77778888889999 9999999999999999999998 788888776553
No 98
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.32 E-value=6.7e-11 Score=119.94 Aligned_cols=198 Identities=13% Similarity=0.063 Sum_probs=126.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++|||||+|.||.++|++|.+.|++|.+++++.++........ ++... +++++++. +|+|+++||+. .
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~------G~~~~-s~~eaa~~---ADVVvLaVPd~-~ 85 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEAD------GFEVL-TVAEAAKW---ADVIMILLPDE-V 85 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHC------CCeeC-CHHHHHhc---CCEEEEcCCHH-H
Confidence 35799999999999999999999999999988866544443321 24443 88888887 99999999986 5
Q ss_pred HHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe-CCCCCCHHH-----hhcCC-ccc-cCCC--HHH
Q 010637 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEG-----ARHGP-SLM-PGGS--FEA 154 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsGg~~~-----a~~G~-~im-~gg~--~ea 154 (505)
...++ +++.+.+++|.+|+.+....... .......++..+- +|-..+..- ...|. .++ +..+ .++
T Consensus 86 ~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~----~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a 161 (330)
T PRK05479 86 QAEVYEEEIEPNLKEGAALAFAHGFNIHF----GQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNA 161 (330)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCCChhh----ceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHH
Confidence 58888 78999999999886665532211 1121223443333 454433311 12344 444 5555 788
Q ss_pred HHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHH
Q 010637 155 YNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELA 221 (505)
Q Consensus 155 ~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~ 221 (505)
.+.+..++..+|+...+--...+-.+..+.-|=- +..+..+...++..++.++.+.| .+|+...
T Consensus 162 ~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~ge--q~vl~gg~~~l~~~~~e~l~eaG-~~pe~Ay 225 (330)
T PRK05479 162 KDLALAYAKGIGGTRAGVIETTFKEETETDLFGE--QAVLCGGLTELIKAGFETLVEAG-YQPEMAY 225 (330)
T ss_pred HHHHHHHHHHcCCCccceeeeeecccccccchhh--HHHHhhHHHHHHHHHHHHHHHcC-CCHHHHH
Confidence 9999999999995421100001111110111100 11233456677888899999999 9998653
No 99
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.30 E-value=1.8e-10 Score=116.71 Aligned_cols=254 Identities=16% Similarity=0.175 Sum_probs=157.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccC-CCC-----eeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREG-QLP-----LTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g-~~~-----i~~~~s~~e~v~~l~~advIil~v 80 (505)
|||.|+|+|.||+-++..|+++|++|.++.|++. ++++.+.+..-- ..+ ...+.+.+ .+..+|+||++|
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~----~~~~~Dlviv~v 75 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAE----ALGPADLVIVTV 75 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChh----hcCCCCEEEEEe
Confidence 6899999999999999999999999999999876 788887653200 001 01111122 223499999999
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC----CCeEEeCCCCC--CHHHhhcCC---ccccCCC
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSG--GEEGARHGP---SLMPGGS 151 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsG--g~~~a~~G~---~im~gg~ 151 (505)
++. ++++++..+.+.+.+.+.|+-.-|+..... .+.+..... |+.+.++--.| ...-+..|. ..+.|+.
T Consensus 76 Ka~-q~~~al~~l~~~~~~~t~vl~lqNG~g~~e-~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~ 153 (307)
T COG1893 76 KAY-QLEEALPSLAPLLGPNTVVLFLQNGLGHEE-ELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGR 153 (307)
T ss_pred ccc-cHHHHHHHhhhcCCCCcEEEEEeCCCcHHH-HHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCc
Confidence 996 799999999999999999998888875443 555554443 23333322111 111111233 2344556
Q ss_pred HHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhh---------------------hHHHhHhhHHHHHHHHHH
Q 010637 152 FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHN---------------------GIEYGDMQLISEAYDVLK 210 (505)
Q Consensus 152 ~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N---------------------~i~~~~~~~i~Ea~~l~~ 210 (505)
++.++.+.++|+.-+. .+.+..+.-...+.|++-| ........++.|...++.
T Consensus 154 ~~~~~~i~~~~~~a~~------~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~ 227 (307)
T COG1893 154 DELVKALAELFKEAGL------EVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVAR 227 (307)
T ss_pred hHHHHHHHHHHHhCCC------CeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHH
Confidence 6778888888877663 3333333344444555444 233445678899999999
Q ss_pred HhC-CCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHH
Q 010637 211 HVG-GLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 211 ~~g-~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
+.| .++.+.+.+++........ ....++..++...+ .-.+|.|... .++.|+++|+++|++..
T Consensus 228 ~~g~~~~~~~~~~v~~~~~~~~~-~~~sSM~qDl~~gr-----~tEid~i~G~---------vv~~a~~~gi~~P~~~~ 291 (307)
T COG1893 228 AEGVELPEEVVERVLAVIRATDA-ENYSSMLQDLEKGR-----PTEIDAINGA---------VVRLAKKHGLATPVNDT 291 (307)
T ss_pred hccCCCCHHHHHHHHHHHHhccc-ccCchHHHHHHcCC-----cccHHHHhhH---------HHHHHHHhCCCCcHHHH
Confidence 887 2344334444432222211 11223333443321 2467887653 68999999999999874
No 100
>PLN02712 arogenate dehydrogenase
Probab=99.29 E-value=1.3e-10 Score=128.91 Aligned_cols=160 Identities=10% Similarity=0.134 Sum_probs=111.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++|||||+|.||..+|..|.+.|++|.+|||+... +...+. ++..+.++++++.. .+|+||+|||.. .
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~-------Gv~~~~d~~e~~~~--~aDvViLavP~~-~ 120 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSL-------GVSFFLDPHDLCER--HPDVILLCTSII-S 120 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHc-------CCEEeCCHHHHhhc--CCCEEEEcCCHH-H
Confidence 468999999999999999999999999999998554 322222 35567788886531 289999999984 7
Q ss_pred HHHHHHHHH-hcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC-CCCCCHHH--hhcCC-cccc----CCCH---H
Q 010637 86 VDQTIAALS-EHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEG--ARHGP-SLMP----GGSF---E 153 (505)
Q Consensus 86 v~~vl~~l~-~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsGg~~~--a~~G~-~im~----gg~~---e 153 (505)
+..+++++. +.++++.+|+|++++.....+.+...+ ..+..|++. |+.|.+.. ...+. .++. +.+. +
T Consensus 121 ~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l-~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~ 199 (667)
T PLN02712 121 TENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYL-PEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVS 199 (667)
T ss_pred HHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhc-CCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHH
Confidence 899998886 678899999999987643333333333 336778875 77776521 12222 2233 2222 3
Q ss_pred HHHHHHHHHHHHhcccCCCCceEEeCCCcc
Q 010637 154 AYNNIRDILQKVAAQVDDGPCVTYIGEGGS 183 (505)
Q Consensus 154 a~~~v~~ll~~iga~~~~~~~v~~vG~~G~ 183 (505)
.++.++++++.+| .+++.+.+...
T Consensus 200 ~~~~l~~l~~~lG------a~v~~ms~eeH 223 (667)
T PLN02712 200 RCKSFLEVFEREG------CKMVEMSCTEH 223 (667)
T ss_pred HHHHHHHHHHHcC------CEEEEeCHHHH
Confidence 4566779999999 45677765433
No 101
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.28 E-value=5.4e-10 Score=110.83 Aligned_cols=185 Identities=12% Similarity=0.104 Sum_probs=118.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF----PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~----~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|||+|||+|.||.+|+..|.++|. +|++++|++++. .+....++.++++. +|+||+|+|+
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-------------~~~~~~~~~~~~~~---~D~Vilavkp 67 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-------------PFVYLQSNEELAKT---CDIIVLAVKP 67 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-------------CeEEeCChHHHHHh---CCEEEEEeCH
Confidence 589999999999999999999873 499999987541 13456788888776 9999999998
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC--CCeEEeCCCCCCHHHhhcCC-ccccC--CCHHHHHH
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--GLLYLGMGVSGGEEGARHGP-SLMPG--GSFEAYNN 157 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~--gi~~i~~pvsGg~~~a~~G~-~im~g--g~~ea~~~ 157 (505)
..+++++.++.+.+.++.+|.++++..... +.+.+... .++++ | +.+.....|. .+.++ .+++..+.
T Consensus 68 -~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~---l~~~~~~~~~vvr~m--P--n~p~~~g~g~t~i~~~~~~~~~~~~~ 139 (260)
T PTZ00431 68 -DLAGKVLLEIKPYLGSKLLISICGGLNLKT---LEEMVGVEAKIVRVM--P--NTPSLVGQGSLVFCANNNVDSTDKKK 139 (260)
T ss_pred -HHHHHHHHHHHhhccCCEEEEEeCCccHHH---HHHHcCCCCeEEEEC--C--CchhHhcceeEEEEeCCCCCHHHHHH
Confidence 489999999999887655555555554322 22222211 12222 2 1223334555 33332 25677889
Q ss_pred HHHHHHHHhcccCCCCceEEeCCCcc--hhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010637 158 IRDILQKVAAQVDDGPCVTYIGEGGS--GNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDE 226 (505)
Q Consensus 158 v~~ll~~iga~~~~~~~v~~vG~~G~--g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~ 226 (505)
++.+|+.+| .++++.+..- ...+--+-.++.+.++..+.++ +.+.| ++.++..++..+
T Consensus 140 v~~l~~~~G-------~~~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~---~v~~G-l~~~~a~~l~~~ 199 (260)
T PTZ00431 140 VIDIFSACG-------IIQEIKEKDMDIATAISGCGPAYVFLFIESLIDA---GVKNG-LNRDVSKNLVLQ 199 (260)
T ss_pred HHHHHHhCC-------cEEEEChHHcchhhhhcCCHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH
Confidence 999999999 3445543211 1111111133444555555555 45667 999999888744
No 102
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.27 E-value=9.6e-11 Score=120.94 Aligned_cols=153 Identities=10% Similarity=0.095 Sum_probs=113.9
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhC-CCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
.++|+|||+ |.||..+|+.|.+. |++|++||++.+ ...++++.+.+ +|+||+|+|..
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~------------------~~~~~~~~v~~---aDlVilavPv~ 62 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP------------------GSLDPATLLQR---ADVLIFSAPIR 62 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc------------------ccCCHHHHhcC---CCEEEEeCCHH
Confidence 468999999 99999999999964 899999998511 13466777766 99999999995
Q ss_pred chHHHHHHHHHhc---CCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC-CCCCCHH-HhhcCC-ccc-cCCCHHHHH
Q 010637 84 SPVDQTIAALSEH---MSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEE-GARHGP-SLM-PGGSFEAYN 156 (505)
Q Consensus 84 ~~v~~vl~~l~~~---l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsGg~~-~a~~G~-~im-~gg~~ea~~ 156 (505)
.+.+++.++.+. ++++.+|+|.+++...-.... ...+..|++. |+.|.+. +...|. .++ ++...+..+
T Consensus 63 -~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~----~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~ 137 (370)
T PRK08818 63 -HTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM----LASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSP 137 (370)
T ss_pred -HHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH----HhcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHH
Confidence 788899998875 789999999999874333332 3345679986 7777653 334555 443 455556678
Q ss_pred HHHHHHHHHhcccCCCCceEEeCCCcchhhhhhH
Q 010637 157 NIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMV 190 (505)
Q Consensus 157 ~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v 190 (505)
.++.+++.+| ..++.+.+...-..+-.+
T Consensus 138 ~v~~l~~~~G------a~v~~~~aeeHD~~~A~v 165 (370)
T PRK08818 138 WVQSLCSALQ------AECVYATPEHHDRVMALV 165 (370)
T ss_pred HHHHHHHHcC------CEEEEcCHHHHHHHHHHH
Confidence 8999999999 567787765544455444
No 103
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.26 E-value=2.9e-11 Score=113.11 Aligned_cols=195 Identities=14% Similarity=0.176 Sum_probs=133.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhc-------ccC------C---C------CeeeeCCH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-------REG------Q---L------PLTGHYTP 63 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~-------~~g------~---~------~i~~~~s~ 63 (505)
+..|+|||.|.||++||+.-+..|++|.++|++++.+.+..+... .++ . + +++.+++.
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv 90 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNV 90 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCH
Confidence 457999999999999999999999999999999987655433110 000 0 0 34556667
Q ss_pred HHHHhhcCCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHH----CCCeEEeC-CCCCCH
Q 010637 64 RDFVLSIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLGM-GVSGGE 137 (505)
Q Consensus 64 ~e~v~~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~----~gi~~i~~-pvsGg~ 137 (505)
.+++.. +|+||.++-+...++.-+ ..|-...++..+++.. |++..-+ +++..++. .|.||+.+ ||.--.
T Consensus 91 ~~~v~d---adliiEAivEn~diK~~lF~~l~~~ak~~~il~tN-TSSl~lt-~ia~~~~~~srf~GlHFfNPvPvMKLv 165 (298)
T KOG2304|consen 91 SDAVSD---ADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATN-TSSLSLT-DIASATQRPSRFAGLHFFNPVPVMKLV 165 (298)
T ss_pred HHhhhh---hHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeec-ccceeHH-HHHhhccChhhhceeeccCCchhHHHh
Confidence 777766 899998887776665544 4555545555555544 4433332 33333332 28899885 666555
Q ss_pred HHhhcCCccccCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCH
Q 010637 138 EGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN 217 (505)
Q Consensus 138 ~~a~~G~~im~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~ 217 (505)
+..+. .-.+++.+..+..+-+.+| +..+-+-+ -.|..| |.+ .+-.+.|++++.+++- .+.
T Consensus 166 EVir~-----~~TS~eTf~~l~~f~k~~g------KttVackD-tpGFIV----NRl---LiPyl~ea~r~yerGd-Ask 225 (298)
T KOG2304|consen 166 EVIRT-----DDTSDETFNALVDFGKAVG------KTTVACKD-TPGFIV----NRL---LIPYLMEAIRMYERGD-ASK 225 (298)
T ss_pred hhhcC-----CCCCHHHHHHHHHHHHHhC------CCceeecC-CCchhh----hHH---HHHHHHHHHHHHHhcC-CcH
Confidence 54333 2347889999999999999 66666644 555554 444 5677799999999988 999
Q ss_pred HHHHHHHH
Q 010637 218 AELAEIFD 225 (505)
Q Consensus 218 ~~i~~v~~ 225 (505)
++|+..++
T Consensus 226 eDIDtaMk 233 (298)
T KOG2304|consen 226 EDIDTAMK 233 (298)
T ss_pred hhHHHHHh
Confidence 99999985
No 104
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.26 E-value=6.9e-12 Score=110.10 Aligned_cols=110 Identities=16% Similarity=0.265 Sum_probs=74.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEE-EeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISV-YNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v-~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+||+|||.|++|..|++.|.++||+|.. |+|+++..+++..... -..+.++.|+++. +|++|++||++
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~------~~~~~~~~~~~~~---aDlv~iavpDd- 79 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIG------AGAILDLEEILRD---ADLVFIAVPDD- 79 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--T------T-----TTGGGCC----SEEEE-S-CC-
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccc------ccccccccccccc---CCEEEEEechH-
Confidence 46899999999999999999999999875 5899888777765432 1234466666665 99999999997
Q ss_pred hHHHHHHHHHhc--CCCCcEEEecCCCCchhHHHHHHHHHHCCCeE
Q 010637 85 PVDQTIAALSEH--MSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 85 ~v~~vl~~l~~~--l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
.+..+.++|... ..+|++|++||.....+.. +-++++|...
T Consensus 80 aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL---~p~~~~Ga~~ 122 (127)
T PF10727_consen 80 AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVL---APARERGAIV 122 (127)
T ss_dssp HHHHHHHHHHCC--S-TT-EEEES-SS--GGGG---HHHHHTT-EE
T ss_pred HHHHHHHHHHHhccCCCCcEEEECCCCChHHhh---hhHHHCCCeE
Confidence 899999999987 7899999999998765543 3455566543
No 105
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=99.11 E-value=3.6e-09 Score=100.80 Aligned_cols=139 Identities=19% Similarity=0.227 Sum_probs=95.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|+|+|+|.||..+|++|.+.|++|.++|+++++++.+.+.. +....++ +++... .+|+++-|...+...
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~------g~~~v~~-~~l~~~--~~Dv~vp~A~~~~I~ 99 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELF------GATVVAP-EEIYSV--DADVFAPCALGGVIN 99 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHc------CCEEEcc-hhhccc--cCCEEEecccccccC
Confidence 5799999999999999999999999999999999888877642 1233333 444432 389998776554333
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe-CCC-CCCHHHhhcCCccccCCCH-HHHHHHHHHHH
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGV-SGGEEGARHGPSLMPGGSF-EAYNNIRDILQ 163 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pv-sGg~~~a~~G~~im~gg~~-ea~~~v~~ll~ 163 (505)
++.++ .+ +.++|++.+|....+ .+..+.++++|+.|++ ... +||. ..+...|+++.+ ++.++++++++
T Consensus 100 ~~~~~----~l-~~~~v~~~AN~~~~~-~~~~~~L~~~Gi~~~Pd~~~NaGGv---~~~~~e~~~~~~~~~~~~~~~~~~ 170 (200)
T cd01075 100 DDTIP----QL-KAKAIAGAANNQLAD-PRHGQMLHERGILYAPDYVVNAGGL---INVADELYGGNEARVLAKVEAIYD 170 (200)
T ss_pred HHHHH----Hc-CCCEEEECCcCccCC-HhHHHHHHHCCCEEeCceeeeCcCc---eeehhHHhCCcHHHHHHHHHHHHH
Confidence 33333 34 468999999987654 6788889999999987 444 5533 233345566553 44444444433
No 106
>PRK07574 formate dehydrogenase; Provisional
Probab=99.08 E-value=2.1e-09 Score=111.72 Aligned_cols=111 Identities=13% Similarity=0.147 Sum_probs=94.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|.+|.+|||++...+..... +++...+++++++. +|+|++++|.....
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~-------g~~~~~~l~ell~~---aDvV~l~lPlt~~T 262 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQEL-------GLTYHVSFDSLVSV---CDVVTIHCPLHPET 262 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhc-------CceecCCHHHHhhc---CCEEEEcCCCCHHH
Confidence 579999999999999999999999999999986432222221 24556789999887 99999999999999
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCe
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
+.++ ++.+..+++|.++|+++.+...+...+.+.+.+..+.
T Consensus 263 ~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~ 304 (385)
T PRK07574 263 EHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLA 304 (385)
T ss_pred HHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCcc
Confidence 9998 5788889999999999999999999999999876554
No 107
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.08 E-value=1.3e-09 Score=111.60 Aligned_cols=117 Identities=18% Similarity=0.200 Sum_probs=95.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|..|...|++|.+||++++....+ +....+++++++. +|+|++++|...+.
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~-----------~~~~~~l~ell~~---aDiVil~lP~t~~t 212 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF-----------LTYKDSVKEAIKD---ADIISLHVPANKES 212 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh-----------hhccCCHHHHHhc---CCEEEEeCCCcHHH
Confidence 579999999999999999999999999999998653321 1234688888887 99999999998777
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCH
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~ 137 (505)
..++ +++.+.+++|.++|+++.+...+...+.+.+.+..+.....-|.-.+
T Consensus 213 ~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~E 264 (330)
T PRK12480 213 YHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENE 264 (330)
T ss_pred HHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCC
Confidence 7777 67888899999999999999999999999998765544444444333
No 108
>PLN03139 formate dehydrogenase; Provisional
Probab=99.06 E-value=3.6e-09 Score=109.90 Aligned_cols=113 Identities=11% Similarity=0.043 Sum_probs=94.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|..-|.+|.+||++....+...+. ++....++++++.. +|+|++++|.....
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~-------g~~~~~~l~ell~~---sDvV~l~lPlt~~T 269 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKET-------GAKFEEDLDAMLPK---CDVVVINTPLTEKT 269 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhc-------CceecCCHHHHHhh---CCEEEEeCCCCHHH
Confidence 579999999999999999999999999999986433322222 24556789999987 99999999999999
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (505)
+.++ .+++..+++|.++|+++.+...+...+.+.+++..+...
T Consensus 270 ~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GA 313 (386)
T PLN03139 270 RGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGY 313 (386)
T ss_pred HHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEE
Confidence 9998 578888999999999999999999999999987655433
No 109
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=99.05 E-value=1.1e-08 Score=102.76 Aligned_cols=243 Identities=18% Similarity=0.206 Sum_probs=140.4
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcc----cCCC---CeeeeCCHHHHHhhcCCCcEEEEEcCCCchHHHH
Q 010637 17 MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR----EGQL---PLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQT 89 (505)
Q Consensus 17 MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~----~g~~---~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~v 89 (505)
||..+|..|+++|++|++++|+ ++.+.+.+.+.. .+.. .+...+++++ +..+|+||++|+.. +++++
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~----~~~~D~iiv~vKs~-~~~~~ 75 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE----LPPADLVIITVKAY-QTEEA 75 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh----cCCCCEEEEeccch-hHHHH
Confidence 7999999999999999999997 667777654421 0000 0111223333 23489999999996 78999
Q ss_pred HHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC----CCeEEeCCCCCCHHHhhcCC-ccccCCC---HHHHHHHHHH
Q 010637 90 IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-SLMPGGS---FEAYNNIRDI 161 (505)
Q Consensus 90 l~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsGg~~~a~~G~-~im~gg~---~ea~~~v~~l 161 (505)
++.+.+.+.++.+|+...|+... .+.+.+.+... |+.++++-..+.......+. .+..|.. .+..+.+..+
T Consensus 76 l~~l~~~l~~~~~iv~~qNG~g~-~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~~ 154 (293)
T TIGR00745 76 AALLLPLIGKNTKVLFLQNGLGH-EERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAEL 154 (293)
T ss_pred HHHhHhhcCCCCEEEEccCCCCC-HHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHHH
Confidence 99999999999999999888643 23444444322 22222222222111111122 2333332 2444566666
Q ss_pred HHHHhcccCCCCceEEeCCCcchhhhhhHhhh---------------------HHHhHhhHHHHHHHHHHHhCCCC--HH
Q 010637 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNG---------------------IEYGDMQLISEAYDVLKHVGGLS--NA 218 (505)
Q Consensus 162 l~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~---------------------i~~~~~~~i~Ea~~l~~~~g~l~--~~ 218 (505)
|+..+ ..+....+.-...+.|++.|. .......++.|+..++++.| ++ .+
T Consensus 155 l~~~~------~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G-~~~~~~ 227 (293)
T TIGR00745 155 LNEAG------IPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEG-VDLPDD 227 (293)
T ss_pred HHhCC------CCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCC-CCCCHH
Confidence 76655 223333333334444444332 23445677899999999987 65 44
Q ss_pred HHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHH
Q 010637 219 ELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 219 ~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
.+.+.+.........+ ..++..++...+ ...+|.+.. +.++.|+++|+|+|....
T Consensus 228 ~~~~~~~~~~~~~~~~-~sSm~~D~~~gr-----~tEid~i~G---------~~v~~a~~~gv~~P~~~~ 282 (293)
T TIGR00745 228 EVEELVRAVIRMTAEN-TSSMLQDLLRGR-----RTEIDAING---------AVVRLAEKLGIDAPVNRT 282 (293)
T ss_pred HHHHHHHHHHhcCCCC-CChHHHHHHcCC-----cchHHHhcc---------HHHHHHHHcCCCCChHHH
Confidence 4445444332211111 122333444322 136677664 578999999999998875
No 110
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.05 E-value=5.7e-09 Score=105.93 Aligned_cols=145 Identities=12% Similarity=0.088 Sum_probs=96.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCC-hHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRT-TSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~-~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|||||+|.||.++|++|.+.|++|.++++. +++.+.+.+. ++.. .++.++++. +|+|+++||+..+
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~-------Gv~~-~s~~ea~~~---ADiVvLaVpp~~~ 72 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATED-------GFKV-GTVEEAIPQ---ADLIMNLLPDEVQ 72 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHC-------CCEE-CCHHHHHhc---CCEEEEeCCcHhH
Confidence 57999999999999999999999998876554 3445554433 2444 457887776 9999999998646
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE-eCCCCCCHHH-----hhcCC-ccc-cC--CCHHHH
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEG-----ARHGP-SLM-PG--GSFEAY 155 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i-~~pvsGg~~~-----a~~G~-~im-~g--g~~ea~ 155 (505)
...+.+++.+.++++. +|..+.+.. .......+. .++..+ -+|-..+... ...|. +++ ++ -+.+..
T Consensus 73 ~~~v~~ei~~~l~~g~-iVs~aaG~~--i~~~~~~~~-~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~ 148 (314)
T TIGR00465 73 HEVYEAEIQPLLKEGK-TLGFSHGFN--IHFVQIVPP-KDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAM 148 (314)
T ss_pred HHHHHHHHHhhCCCCc-EEEEeCCcc--HhhccccCC-CCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHH
Confidence 6766778989888776 555555543 222233332 233333 4564443310 02444 443 33 366788
Q ss_pred HHHHHHHHHHh
Q 010637 156 NNIRDILQKVA 166 (505)
Q Consensus 156 ~~v~~ll~~ig 166 (505)
+.+..+++.+|
T Consensus 149 ~~~~~~~~~iG 159 (314)
T TIGR00465 149 AIALAYAKAIG 159 (314)
T ss_pred HHHHHHHHHcC
Confidence 89999999999
No 111
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.99 E-value=7.3e-09 Score=97.26 Aligned_cols=203 Identities=15% Similarity=0.260 Sum_probs=132.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH-----------hhcccCCC-------CeeeeCCHHHHHh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD-----------RAHREGQL-------PLTGHYTPRDFVL 68 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~-----------~~~~~g~~-------~i~~~~s~~e~v~ 68 (505)
.||||+|.|.+|+..|..++..||+|.+||..++.+....+ .+...|++ .+.+++++.|+++
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk 83 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVK 83 (313)
T ss_pred cceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHh
Confidence 58999999999999999999999999999999876543222 22222222 3567889999999
Q ss_pred hcCCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC--c
Q 010637 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP--S 145 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~--~ 145 (505)
. +=.|-.|+|++-.++.-+ .+|-..+.+ .+|+..||+.+..+.-.+....... -.+.-||-... .-| -
T Consensus 84 ~---Ai~iQEcvpE~L~lkk~ly~qlD~i~d~-~tIlaSSTSt~mpS~~s~gL~~k~q-~lvaHPvNPPy----fiPLvE 154 (313)
T KOG2305|consen 84 G---AIHIQECVPEDLNLKKQLYKQLDEIADP-TTILASSTSTFMPSKFSAGLINKEQ-CLVAHPVNPPY----FIPLVE 154 (313)
T ss_pred h---hhhHHhhchHhhHHHHHHHHHHHHhcCC-ceEEeccccccChHHHhhhhhhhhh-eeEecCCCCCc----ccchhe
Confidence 7 778888999987777665 445454544 5555666665444433332222222 23333332110 011 1
Q ss_pred cc--cCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHH
Q 010637 146 LM--PGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223 (505)
Q Consensus 146 im--~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v 223 (505)
++ +=.+++.+++.+.+++.+|. .++....+-.|. +.|.+.|++. +|.+.|...++ ++..+++.+
T Consensus 155 lVPaPwTsp~tVdrt~~lM~sigq------~pV~l~rei~Gf----~lnriq~Ail---ne~wrLvasGi-l~v~dvD~V 220 (313)
T KOG2305|consen 155 LVPAPWTSPDTVDRTRALMRSIGQ------EPVTLKREILGF----ALNRIQYAIL---NETWRLVASGI-LNVNDVDAV 220 (313)
T ss_pred eccCCCCChhHHHHHHHHHHHhCC------CCcccccccccc----eeccccHHHH---HHHHHHHHccC-cchhhHHHH
Confidence 22 23578999999999999994 333333323333 4477777665 99999999887 999999988
Q ss_pred HHHhccCCcchh
Q 010637 224 FDEWNKGELESF 235 (505)
Q Consensus 224 ~~~~~~g~~~s~ 235 (505)
+. .|-+..|
T Consensus 221 mS---~GLG~RY 229 (313)
T KOG2305|consen 221 MS---AGLGPRY 229 (313)
T ss_pred Hh---cCCCcch
Confidence 73 4544433
No 112
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.98 E-value=4.2e-09 Score=108.05 Aligned_cols=116 Identities=16% Similarity=0.184 Sum_probs=94.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|+.|...|++|.+|||++.... .... ++. ..+++++++. +|+|++++|.....
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~-------~~~-~~~l~ell~~---aDiV~l~lP~t~~T 218 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKEL-------GAE-YRPLEELLRE---SDFVSLHVPLTKET 218 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHc-------CCE-ecCHHHHHhh---CCEEEEeCCCChHH
Confidence 5799999999999999999999999999999875432 1111 122 3588898887 99999999998888
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCC
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvs 134 (505)
+.++ .+....+++|.++|++|.+...+...+.+.+.+..+.....-|+
T Consensus 219 ~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~ 267 (333)
T PRK13243 219 YHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVF 267 (333)
T ss_pred hhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccC
Confidence 8888 67888899999999999999999999999998765543333343
No 113
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=98.96 E-value=1.4e-08 Score=100.68 Aligned_cols=153 Identities=18% Similarity=0.273 Sum_probs=101.7
Q ss_pred HHHHHHhCC--CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchHHHHHHHHHhcCC
Q 010637 21 LALNVAEKG--FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMS 98 (505)
Q Consensus 21 lA~~La~~G--~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~ 98 (505)
+|+.|.++| ++|++||++++..+...+.+.. -....+ .+.+.. +|+||+|+|.. .+.+++.++.++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~-----~~~~~~-~~~~~~---~DlvvlavP~~-~~~~~l~~~~~~~~ 70 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGII-----DEASTD-IEAVED---ADLVVLAVPVS-AIEDVLEEIAPYLK 70 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSS-----SEEESH-HHHGGC---CSEEEE-S-HH-HHHHHHHHHHCGS-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCe-----eeccCC-HhHhcC---CCEEEEcCCHH-HHHHHHHHhhhhcC
Confidence 688899999 7899999999988777666542 123333 455665 99999999995 78999999999999
Q ss_pred CCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC-CCCCCH----H----HhhcCC--ccccCC--CHHHHHHHHHHHHHH
Q 010637 99 PGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGE----E----GARHGP--SLMPGG--SFEAYNNIRDILQKV 165 (505)
Q Consensus 99 ~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsGg~----~----~a~~G~--~im~gg--~~ea~~~v~~ll~~i 165 (505)
+|.+|+|.+++.-.......+.+. .+..|++. |+.|.+ . .-..|. .+.++. +++.++.++.+++.+
T Consensus 71 ~~~iv~Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~ 149 (258)
T PF02153_consen 71 PGAIVTDVGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEAL 149 (258)
T ss_dssp TTSEEEE--S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHC
T ss_pred CCcEEEEeCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHC
Confidence 999999999998766666665555 67889986 666662 2 222444 333343 567899999999999
Q ss_pred hcccCCCCceEEeCCCcchhhhhhH
Q 010637 166 AAQVDDGPCVTYIGEGGSGNFVKMV 190 (505)
Q Consensus 166 ga~~~~~~~v~~vG~~G~g~~vK~v 190 (505)
| .+++.+.+.-.-..+-++
T Consensus 150 G------a~~~~~~~eeHD~~~A~v 168 (258)
T PF02153_consen 150 G------ARVVEMDAEEHDRIMAYV 168 (258)
T ss_dssp T-------EEEE--HHHHHHHHHHH
T ss_pred C------CEEEEcCHHHHHHHHHHH
Confidence 9 467777654333333333
No 114
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.95 E-value=2.5e-09 Score=97.16 Aligned_cols=118 Identities=19% Similarity=0.170 Sum_probs=85.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.++|+|||+|.||..++..|++.| ++|.++||++++.+++.+...... -.....+..++++. +|+||.++|.+.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~Dvvi~~~~~~~ 93 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG--IAIAYLDLEELLAE---ADLIINTTPVGM 93 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc--cceeecchhhcccc---CCEEEeCcCCCC
Confidence 357999999999999999999996 889999999998888776532100 00234566666555 999999999975
Q ss_pred h-HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC
Q 010637 85 P-VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 85 ~-v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (505)
. ++.+... ...++++.+++|+++..+ .+ .+.+.+++.|++|++.
T Consensus 94 ~~~~~~~~~-~~~~~~~~~v~D~~~~~~-~~-~l~~~~~~~g~~~v~g 138 (155)
T cd01065 94 KPGDELPLP-PSLLKPGGVVYDVVYNPL-ET-PLLKEARALGAKTIDG 138 (155)
T ss_pred CCCCCCCCC-HHHcCCCCEEEEcCcCCC-CC-HHHHHHHHCCCceeCC
Confidence 4 2332211 123678999999988744 44 7778888888887653
No 115
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.94 E-value=6.8e-09 Score=106.54 Aligned_cols=109 Identities=14% Similarity=0.110 Sum_probs=89.0
Q ss_pred CcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La-~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|||||+|.||+.+|++|+ ..|.+|.+||+++.... .. .+....+++++++. +|+|++++|....
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~-------~~~~~~~l~ell~~---aDvIvl~lP~t~~ 213 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA---AT-------YVDYKDTIEEAVEG---ADIVTLHMPATKY 213 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH---Hh-------hccccCCHHHHHHh---CCEEEEeCCCCcc
Confidence 57999999999999999994 46889999999875421 11 13345689999887 9999999999877
Q ss_pred HHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeE
Q 010637 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
.+.++ .++.+.+++|.++|++|.+...++..+.+.+.+..+..
T Consensus 214 t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~g 257 (332)
T PRK08605 214 NHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKG 257 (332)
T ss_pred hhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeE
Confidence 77665 56778899999999999999999999999998765543
No 116
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.93 E-value=4.6e-09 Score=106.71 Aligned_cols=117 Identities=17% Similarity=0.253 Sum_probs=93.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|++|.+||+++.+...+. ......++++++.. +|+|++++|...+.
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~---------~~~~~~~l~e~l~~---aDvvv~~lPlt~~T 204 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQ---------SFAGREELSAFLSQ---TRVLINLLPNTPET 204 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCce---------eecccccHHHHHhc---CCEEEECCCCCHHH
Confidence 5799999999999999999999999999999765421111 01123577788877 99999999999999
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
+.++ .+.+..+++|.++|+++-+..-+...+.+.|.+..+.....-|+-
T Consensus 205 ~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~ 254 (312)
T PRK15469 205 VGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFS 254 (312)
T ss_pred HHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCC
Confidence 9888 467888999999999999999999999999988655443333443
No 117
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.92 E-value=6.5e-09 Score=105.04 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=92.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|+.|..-|++|.+|||+... .+. .....+++++++. +|+|++++|...+.
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~------~~~~~~l~ell~~---aDiv~~~lp~t~~T 187 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGI------SSIYMEPEDIMKK---SDFVLISLPLTDET 187 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCc------ccccCCHHHHHhh---CCEEEECCCCCchh
Confidence 57999999999999999888889999999998432 111 0124689998877 99999999999888
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCC
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg 136 (505)
+.++ .+.+..+++|.++|++|.+...++..+.+.+.+..+.....-|.-.
T Consensus 188 ~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~ 238 (303)
T PRK06436 188 RGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWN 238 (303)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCC
Confidence 8888 5677889999999999999999999999999876454433334433
No 118
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.92 E-value=7.3e-09 Score=96.86 Aligned_cols=111 Identities=12% Similarity=0.210 Sum_probs=90.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|+.|..-|.+|.+|||+.......... .+ ...+++++.+. +|+|++++|.....
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~-------~~-~~~~l~ell~~---aDiv~~~~plt~~T 105 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEF-------GV-EYVSLDELLAQ---ADIVSLHLPLTPET 105 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHT-------TE-EESSHHHHHHH----SEEEE-SSSSTTT
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccc-------cc-eeeehhhhcch---hhhhhhhhcccccc
Confidence 579999999999999999999999999999998865533332 23 45699999998 99999999987777
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeE
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+++..+..
T Consensus 106 ~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~g 148 (178)
T PF02826_consen 106 RGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAG 148 (178)
T ss_dssp TTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEE
T ss_pred ceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCce
Confidence 7777 67778899999999999999989999999988765443
No 119
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.86 E-value=1.4e-08 Score=101.90 Aligned_cols=88 Identities=15% Similarity=0.231 Sum_probs=70.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||.++|++|...|++|.+|+|.....+.....+ +.. .+++++++. +|+|++++|+. ..
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G-------~~v-~sl~Eaak~---ADVV~llLPd~-~t 84 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADG-------FEV-MSVSEAVRT---AQVVQMLLPDE-QQ 84 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcC-------CEE-CCHHHHHhc---CCEEEEeCCCh-HH
Confidence 5799999999999999999999999999997644433333222 343 489999987 99999999985 45
Q ss_pred HHHH-HHHHhcCCCCcEEEec
Q 010637 87 DQTI-AALSEHMSPGDCIIDG 106 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~ 106 (505)
+.++ +++.+.+++|.+++-.
T Consensus 85 ~~V~~~eil~~MK~GaiL~f~ 105 (335)
T PRK13403 85 AHVYKAEVEENLREGQMLLFS 105 (335)
T ss_pred HHHHHHHHHhcCCCCCEEEEC
Confidence 7777 5799999999977653
No 120
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.85 E-value=2.3e-08 Score=99.70 Aligned_cols=125 Identities=19% Similarity=0.198 Sum_probs=89.6
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhC--CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAEK--GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~~--G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi 77 (505)
|+...++||||||+|.||..++.+|.+. +++|. +|||++++.+++.+.... ...+.+++++.+. +|+|+
T Consensus 1 ~~~m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~-----~~~~~~~eell~~---~D~Vv 72 (271)
T PRK13302 1 MSSRPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRR-----PPPVVPLDQLATH---ADIVV 72 (271)
T ss_pred CCCCCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCC-----CcccCCHHHHhcC---CCEEE
Confidence 4432347899999999999999999874 78876 889999998877664311 2456789998765 99999
Q ss_pred EEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeE-EeCCCCCCH
Q 010637 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY-LGMGVSGGE 137 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~-i~~pvsGg~ 137 (505)
+|+|.. ...++.... +..|+.|+..+.....+.+++.+.+++.|..+ +..+-.+|-
T Consensus 73 i~tp~~-~h~e~~~~a---L~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~sGa~~g~ 129 (271)
T PRK13302 73 EAAPAS-VLRAIVEPV---LAAGKKAIVLSVGALLRNEDLIDLARQNGGQIIVPTGALLGL 129 (271)
T ss_pred ECCCcH-HHHHHHHHH---HHcCCcEEEecchhHHhHHHHHHHHHHcCCEEEEcchHHHhH
Confidence 999986 445555444 34666566556555556777888888888765 554555443
No 121
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.77 E-value=4.1e-08 Score=106.79 Aligned_cols=112 Identities=12% Similarity=0.113 Sum_probs=92.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|.+|.+||+.... +..... ++...++++++++. +|+|++++|...+.
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~-------g~~~~~~l~ell~~---aDvV~l~lPlt~~T 207 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQL-------GVELVDDLDELLAR---ADFITVHTPLTPET 207 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhc-------CCEEcCCHHHHHhh---CCEEEEccCCChhh
Confidence 57999999999999999999999999999986322 111211 24455689999887 99999999998888
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (505)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+.+..+...
T Consensus 208 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gA 251 (525)
T TIGR01327 208 RGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAA 251 (525)
T ss_pred ccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEE
Confidence 8888 567778999999999999999999999999988755443
No 122
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.76 E-value=8.9e-08 Score=94.86 Aligned_cols=149 Identities=14% Similarity=0.123 Sum_probs=109.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|||||.|.||+-+|..|.++||.|..++|+. .+.+++..+ ...++.+.++++. .+|+|++|+.. ..+
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~yg------~~~ft~lhdlcer--hpDvvLlctsi-lsi 121 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKYG------SAKFTLLHDLCER--HPDVVLLCTSI-LSI 121 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHhc------ccccccHHHHHhc--CCCEEEEEehh-hhH
Confidence 369999999999999999999999999999997 444444432 3456788888875 59999999987 478
Q ss_pred HHHHHHHHhc-CCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC-CCCCCHHHhhcCC--ccc----cCCC----HHH
Q 010637 87 DQTIAALSEH-MSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEGARHGP--SLM----PGGS----FEA 154 (505)
Q Consensus 87 ~~vl~~l~~~-l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsGg~~~a~~G~--~im----~gg~----~ea 154 (505)
+.++...-+. ++.|++++|..+..........+.+++ .+..+-+ |+.|.......+. .++ -.|. +|.
T Consensus 122 ekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPk-dfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~er 200 (480)
T KOG2380|consen 122 EKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPK-DFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPER 200 (480)
T ss_pred HHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCcc-ccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHH
Confidence 8888777765 889999999988876666667777765 4555555 4554432222222 222 1343 788
Q ss_pred HHHHHHHHHHHhc
Q 010637 155 YNNIRDILQKVAA 167 (505)
Q Consensus 155 ~~~v~~ll~~iga 167 (505)
++.+.++|...+.
T Consensus 201 cE~fleIf~cegc 213 (480)
T KOG2380|consen 201 CEFFLEIFACEGC 213 (480)
T ss_pred HHHHHHHHHhcCC
Confidence 8999999999883
No 123
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.75 E-value=5.3e-08 Score=105.89 Aligned_cols=108 Identities=14% Similarity=0.187 Sum_probs=90.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|++|.+||++... +..... ++... +++++++. +|+|++++|.....
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~-------g~~~~-~l~ell~~---aDiV~l~lP~t~~t 208 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQL-------GVELV-SLDELLAR---ADFITLHTPLTPET 208 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhc-------CCEEE-cHHHHHhh---CCEEEEccCCChHh
Confidence 57999999999999999999999999999986432 122221 24444 89998887 99999999999888
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCC
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (505)
+.++ .+.+..+++|.++|+++.+...+...+.+.+.+..+
T Consensus 209 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i 249 (526)
T PRK13581 209 RGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKV 249 (526)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCe
Confidence 8888 678888999999999999999999999999987644
No 124
>PLN02928 oxidoreductase family protein
Probab=98.74 E-value=1.2e-07 Score=97.75 Aligned_cols=121 Identities=16% Similarity=0.162 Sum_probs=92.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHH--------HhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETL--------DRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~--------~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
++|||||+|.||+.+|+.|...|.+|.+|||+..+..... ...... .....++++++.. +|+|++
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~ell~~---aDiVvl 232 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDE----KGGHEDIYEFAGE---ADIVVL 232 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccc----cCcccCHHHHHhh---CCEEEE
Confidence 5799999999999999999999999999999843211110 000000 0134588888887 999999
Q ss_pred EcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCC
Q 010637 79 LVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (505)
Q Consensus 79 ~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvs 134 (505)
++|.....+.++ .+.+..+++|.++|+++-+..-+...+.+.|.+.-+.....-|+
T Consensus 233 ~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~ 289 (347)
T PLN02928 233 CCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVA 289 (347)
T ss_pred CCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccC
Confidence 999988888888 67788899999999999999999999999998765543333343
No 125
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=98.73 E-value=4.7e-08 Score=99.06 Aligned_cols=98 Identities=39% Similarity=0.700 Sum_probs=78.6
Q ss_pred hhhHHHhHhhHHHHHHHHHHH--hCCCCHHHHHHHHHHhccCC-cchhHHhhhhhhccccccCCCchh-HHHHHhhhCCC
Q 010637 191 HNGIEYGDMQLISEAYDVLKH--VGGLSNAELAEIFDEWNKGE-LESFLVEITADIFKVKDEYGEGEL-VDKILDKTGMK 266 (505)
Q Consensus 191 ~N~i~~~~~~~i~Ea~~l~~~--~g~l~~~~i~~v~~~~~~g~-~~s~l~~~~~~il~~~~~~~~~~~-l~~i~~~~~~k 266 (505)
+|.+.++.++.++|++.++++ .| +|++++.++ |+.+. ++|++++...+++.++ +.+. +..+.++ +
T Consensus 176 ~n~l~~~~~~~~aEa~~l~~~~~~g-ld~~~~~~~---~~~~~~~~s~~l~~~~~~~~~~----~~~~~~~~~~kd---~ 244 (301)
T PRK09599 176 HNGIEYGMMQAYAEGFELLEASRFD-LDLAAVAEV---WRRGSVIRSWLLDLTADALAED----PKLDEISGYVED---S 244 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHH---HhCCcHHHHHHHHHHHHHHhcC----CCHHHHHHHHHh---h
Confidence 478888999999999999999 88 999999887 57664 6999999999988543 2222 4344555 4
Q ss_pred chHHHHHHHHHHcCCCcchHHHHHHHHHHhcch
Q 010637 267 GTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299 (505)
Q Consensus 267 gtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~ 299 (505)
++.+|+++.|.+.|+|+|++++++..|+.+...
T Consensus 245 ~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~ 277 (301)
T PRK09599 245 GEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQE 277 (301)
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 556899999999999999999988888887644
No 126
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.73 E-value=6.2e-08 Score=87.60 Aligned_cols=89 Identities=17% Similarity=0.264 Sum_probs=65.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH-HHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|+|||.|..|.+.|+||.+.|++|.+..|..+ ..+...+.+ ++ ..+.+|+++. +|+|++.+|+. .
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~G-------f~-v~~~~eAv~~---aDvV~~L~PD~-~ 72 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADG-------FE-VMSVAEAVKK---ADVVMLLLPDE-V 72 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT--------E-CCEHHHHHHC----SEEEE-S-HH-H
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCC-------Ce-eccHHHHHhh---CCEEEEeCChH-H
Confidence 5799999999999999999999999999998877 444444443 44 3588888887 99999999994 5
Q ss_pred HHHHH-HHHHhcCCCCcEEEecC
Q 010637 86 VDQTI-AALSEHMSPGDCIIDGG 107 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~s 107 (505)
..+++ +++.|.|++|++++-..
T Consensus 73 q~~vy~~~I~p~l~~G~~L~fah 95 (165)
T PF07991_consen 73 QPEVYEEEIAPNLKPGATLVFAH 95 (165)
T ss_dssp HHHHHHHHHHHHS-TT-EEEESS
T ss_pred HHHHHHHHHHhhCCCCCEEEeCC
Confidence 66777 88999999999887543
No 127
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.71 E-value=4.8e-06 Score=81.88 Aligned_cols=172 Identities=13% Similarity=0.115 Sum_probs=115.2
Q ss_pred CCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCC
Q 010637 29 GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 29 G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
.++|.+|+|++++.+.+.+.. ++..+.+..++++. +|+||+||++ ..+++++.++.+.+.++++||+..+
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~------g~~~~~~~~e~~~~---aDiIiLaVkP-~~i~~vl~~l~~~~~~~~~ivS~~a 78 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKEL------GIVASSDAQEAVKE---ADVVFLAVKP-QDLEEVLSELKSEKGKDKLLISIAA 78 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHc------CcEEeCChHHHHhh---CCEEEEEeCH-HHHHHHHHHHhhhccCCCEEEEecC
Confidence 468999999999988877642 35667888888887 9999999995 6899999999887777899999998
Q ss_pred CCchhHHHHHHHHHHCCCeEE-eCCCCCCHHHhhcCCccc-cCC--CHHHHHHHHHHHHHHhcccCCCCceEEeCCC--c
Q 010637 109 EWYLNTERRIHEASQKGLLYL-GMGVSGGEEGARHGPSLM-PGG--SFEAYNNIRDILQKVAAQVDDGPCVTYIGEG--G 182 (505)
Q Consensus 109 ~~~~~t~~~~~~l~~~gi~~i-~~pvsGg~~~a~~G~~im-~gg--~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~--G 182 (505)
+.+.. .+.+.+.. +...+ -+|-. +.....|.+.+ ++. +++..+.++.+|+.+| .++++.+. -
T Consensus 79 gi~~~--~l~~~~~~-~~~ivR~mPn~--~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G-------~~~~v~E~~~~ 146 (245)
T TIGR00112 79 GVTLE--KLSQLLGG-TRRVVRVMPNT--PAKVGAGVTAIAANANVSEEDRALVLALFKAVG-------EVVELPEALMD 146 (245)
T ss_pred CCCHH--HHHHHcCC-CCeEEEECCCh--HHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCC-------CEEEECHHHcc
Confidence 87544 44444432 12233 24532 23344666433 332 4566788999999999 34455432 1
Q ss_pred chhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010637 183 SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDE 226 (505)
Q Consensus 183 ~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~ 226 (505)
....+--.-.++.+.++..+.++ +.+.| +++++..++..+
T Consensus 147 ~~talsgsgPA~~~~~~~al~~~---~v~~G-l~~~~A~~lv~~ 186 (245)
T TIGR00112 147 AVTALSGSGPAYVFLFIEALADA---GVKQG-LPRELALELAAQ 186 (245)
T ss_pred hHHhhccCcHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH
Confidence 11111123345555666666665 45567 999999888743
No 128
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.69 E-value=1.1e-07 Score=96.83 Aligned_cols=109 Identities=14% Similarity=0.260 Sum_probs=91.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|..+..-|.+|.+||+...+...... ......+++++.+. +|+|++.+|-....
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~--------~~~~~~~Ld~lL~~---sDiv~lh~PlT~eT 211 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVD--------GVVGVDSLDELLAE---ADILTLHLPLTPET 211 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccc--------cceecccHHHHHhh---CCEEEEcCCCCcch
Confidence 57999999999999999999999999999994433211111 24567899999998 99999999999888
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCC
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (505)
+.++ .+.+..+++|.++|+++-+...+...+.+.+.+..+
T Consensus 212 ~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i 252 (324)
T COG0111 212 RGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKI 252 (324)
T ss_pred hcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCc
Confidence 8888 567778999999999999999999999999887544
No 129
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.68 E-value=7.3e-08 Score=100.17 Aligned_cols=116 Identities=13% Similarity=0.163 Sum_probs=90.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc--
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS-- 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~-- 84 (505)
++|||||+|.||+.+|+.|...|++|.+||+..... .+ .....+++++++. +|+|++++|-..
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~-------~~~~~~l~ell~~---aDiV~lh~Plt~~g 181 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA-----EG-------DGDFVSLERILEE---CDVISLHTPLTKEG 181 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc-----cc-------CccccCHHHHHhh---CCEEEEeCcCCCCc
Confidence 579999999999999999999999999999864321 11 1234689999887 999999999764
Q ss_pred --hHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCH
Q 010637 85 --PVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 85 --~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~ 137 (505)
.....+ ++.+..+++|.++|+++.+...+...+.+.+.+..+.....-|.-.+
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~E 237 (381)
T PRK00257 182 EHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGE 237 (381)
T ss_pred cccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 355666 56778899999999999999999999999888754433333344333
No 130
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.64 E-value=2.8e-07 Score=93.89 Aligned_cols=117 Identities=15% Similarity=0.221 Sum_probs=94.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
+++||||+|.+|+.+|+++..-|.+|..|||++. .+..+.. +....+ ++++++. +|+|.+.+|.....
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~--~~~~~~~------~~~y~~-l~ell~~---sDii~l~~Plt~~T 214 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN--PEAEKEL------GARYVD-LDELLAE---SDIISLHCPLTPET 214 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC--hHHHhhc------Cceecc-HHHHHHh---CCEEEEeCCCChHH
Confidence 5799999999999999999977889999999975 2222221 233444 9999988 99999999999999
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
...+ .+.+..+++|.++|+++-+...+...+.+.|++.-+.-.+.-|.-
T Consensus 215 ~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e 264 (324)
T COG1052 215 RHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFE 264 (324)
T ss_pred hhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecC
Confidence 9888 677788999999999999999999999999988655433333443
No 131
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.64 E-value=1.8e-07 Score=98.53 Aligned_cols=114 Identities=14% Similarity=0.188 Sum_probs=93.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|+.+..-|.+|.+||+++.. ... ++....+++++++. +|+|++.+|.....
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~-----~~~------~~~~~~~l~ell~~---sDiVslh~Plt~~T 217 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKL-----PLG------NARQVGSLEELLAQ---SDVVSLHVPETPST 217 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCccc-----ccC------CceecCCHHHHHhh---CCEEEEcCCCChHH
Confidence 57999999999999999999999999999987431 111 23456689999987 99999999998888
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCC
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvs 134 (505)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+.+..+.....-|+
T Consensus 218 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf 266 (409)
T PRK11790 218 KNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVF 266 (409)
T ss_pred hhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCC
Confidence 8888 56778899999999999999999999999998765543333333
No 132
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.63 E-value=2.1e-07 Score=94.71 Aligned_cols=114 Identities=14% Similarity=0.225 Sum_probs=92.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|+.+..-|.+|.+|||+.... .. .+. ..+++++++. +|+|++++|.....
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~-------~~~-~~~l~ell~~---sDvv~lh~Plt~~T 210 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NE-------EYE-RVSLEELLKT---SDIISIHAPLNEKT 210 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----cc-------Cce-eecHHHHhhc---CCEEEEeCCCCchh
Confidence 579999999999999999998899999999974321 11 122 4588998887 99999999998888
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCC
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg 136 (505)
+..+ ++.+..+++|.++|+++-+..-+...+.+.|++..+. ...-|+-.
T Consensus 211 ~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~ 260 (311)
T PRK08410 211 KNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEK 260 (311)
T ss_pred hcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCC
Confidence 8888 6777889999999999999999999999999876554 33334433
No 133
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.63 E-value=5.4e-07 Score=92.06 Aligned_cols=109 Identities=15% Similarity=0.160 Sum_probs=88.8
Q ss_pred CcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La-~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|||||+|.+|+.+|+.+. .-|.+|.+||+...... .... ++. ..+++++++. +|+|++++|-...
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~-~~~~-------~~~-~~~l~ell~~---sDvv~lh~plt~~ 213 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEA-EERF-------NAR-YCDLDTLLQE---SDFVCIILPLTDE 213 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhh-HHhc-------CcE-ecCHHHHHHh---CCEEEEeCCCChH
Confidence 57999999999999999997 67889999998753211 1111 233 3489999887 9999999999988
Q ss_pred HHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCe
Q 010637 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
.+.++ .+.+..+++|.++|+++-+..-+...+.+.+.+..+.
T Consensus 214 T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 256 (323)
T PRK15409 214 THHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIH 256 (323)
T ss_pred HhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 88888 5678889999999999999999999999999876443
No 134
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.62 E-value=3.6e-07 Score=90.93 Aligned_cols=119 Identities=14% Similarity=0.145 Sum_probs=82.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--CCc-EEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK--GFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~--G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
||||||||+|.||..++..|.+. +++ +.++|+++++.+.+.+.. +...+.++++++.. +|+|++|+|+
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~------~~~~~~~~~ell~~---~DvVvi~a~~ 71 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT------GAKACLSIDELVED---VDLVVECASV 71 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc------CCeeECCHHHHhcC---CCEEEEcCCh
Confidence 36899999999999999999876 455 558999999988876642 24567899998754 9999999987
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCC---CchhHHHHHHHHHHCCCe-EEeCCCCCCH
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNE---WYLNTERRIHEASQKGLL-YLGMGVSGGE 137 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~---~~~~t~~~~~~l~~~gi~-~i~~pvsGg~ 137 (505)
. ...+.+..++. .|.-++..|.. .....+++.+..++.|.. ++..+..+|-
T Consensus 72 ~-~~~~~~~~al~---~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sga~~g~ 126 (265)
T PRK13304 72 N-AVEEVVPKSLE---NGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPSGAIVGL 126 (265)
T ss_pred H-HHHHHHHHHHH---cCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCchHHhH
Confidence 4 55555555443 45445555542 334455666667777754 4444444443
No 135
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.61 E-value=2.5e-07 Score=93.05 Aligned_cols=111 Identities=16% Similarity=0.067 Sum_probs=79.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|||+|.||..+|..|...|.+|+++||++++.+.+.+.+.. .....++.+++. .+|+||.++|.. .+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~-----~~~~~~l~~~l~---~aDiVint~P~~-ii 222 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLI-----PFPLNKLEEKVA---EIDIVINTIPAL-VL 222 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCe-----eecHHHHHHHhc---cCCEEEECCChH-Hh
Confidence 579999999999999999999999999999999877665443211 111223444444 499999999875 21
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
. .+..+.++++.+|||.++..-.+.. +..+++|+..+-+|
T Consensus 223 ~---~~~l~~~k~~aliIDlas~Pg~tdf---~~Ak~~G~~a~~~~ 262 (287)
T TIGR02853 223 T---ADVLSKLPKHAVIIDLASKPGGTDF---EYAKKRGIKALLAP 262 (287)
T ss_pred C---HHHHhcCCCCeEEEEeCcCCCCCCH---HHHHHCCCEEEEeC
Confidence 1 3456678889999999886544322 45567788777554
No 136
>PRK06487 glycerate dehydrogenase; Provisional
Probab=98.58 E-value=6e-07 Score=91.60 Aligned_cols=105 Identities=12% Similarity=0.108 Sum_probs=88.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|+.+..-|.+|.+|||.... .. . ...+++++++. +|+|++++|-....
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~------~~-------~-~~~~l~ell~~---sDiv~l~lPlt~~T 211 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP------AR-------P-DRLPLDELLPQ---VDALTLHCPLTEHT 211 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc------cc-------c-cccCHHHHHHh---CCEEEECCCCChHH
Confidence 47999999999999999999999999999986321 00 1 12478898887 99999999998888
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeE
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
+..+ .+....+++|.++|+++-+..-+...+.+.+.+..+..
T Consensus 212 ~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~g 254 (317)
T PRK06487 212 RHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGG 254 (317)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeE
Confidence 8888 67778899999999999999999999999998765543
No 137
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.58 E-value=3.3e-06 Score=81.02 Aligned_cols=202 Identities=13% Similarity=0.144 Sum_probs=134.0
Q ss_pred CCcEEEEcccHH--------------------HHHHHHHHHhCCCcEEEEeCChHHHHHH-HHhhcccCCCCeeeeCCHH
Q 010637 6 LSRIGLAGLAVM--------------------GQNLALNVAEKGFPISVYNRTTSKVDET-LDRAHREGQLPLTGHYTPR 64 (505)
Q Consensus 6 ~~~IgIIGlG~M--------------------G~~lA~~La~~G~~V~v~dr~~~~~~~l-~~~~~~~g~~~i~~~~s~~ 64 (505)
+|||+|+|+|+- |..||..++++||+|.+.+.+.+-.+.- .+..... +++.+++..
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedA---GV~vv~dD~ 77 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDA---GVEVVSDDA 77 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhc---CcEEecCch
Confidence 368999999864 6789999999999999998876543221 2222222 478888888
Q ss_pred HHHhhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHH-HHHHHHHC----CCe-EEeCCCCCCHH
Q 010637 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTER-RIHEASQK----GLL-YLGMGVSGGEE 138 (505)
Q Consensus 65 e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~-~~~~l~~~----gi~-~i~~pvsGg~~ 138 (505)
+.++. +++.++.+|-+...-.+..+|+++++.|.+|.++.|.+|..... +...|+.+ |+. +..++|.|.+.
T Consensus 78 eaa~~---~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~ 154 (340)
T COG4007 78 EAAEH---GEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQ 154 (340)
T ss_pred hhhhc---ceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCC
Confidence 88887 99999999999888888999999999999999999988766544 33334322 442 22234544432
Q ss_pred HhhcCCccccC--------CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHH
Q 010637 139 GARHGPSLMPG--------GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK 210 (505)
Q Consensus 139 ~a~~G~~im~g--------g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~ 210 (505)
+|-.++.| ..+|..+++.++.++.| +.++.+-.+-.....- ..-.+....++.+.+-|....
T Consensus 155 ---h~~yviagr~t~g~elATeEQi~r~velaes~G------k~~yv~padv~s~VaD-mg~lvtav~l~gvldyy~Vg~ 224 (340)
T COG4007 155 ---HGHYVIAGRSTEGKELATEEQIERCVELAESTG------KEVYVLPADVVSAVAD-MGVLVTAVALSGVLDYYYVGT 224 (340)
T ss_pred ---CceEEEeccCCCceeeccHHHHHHHHHHHHhcC------CceEecCHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHH
Confidence 22222222 25677888999999999 6666553321111111 122344456777788888877
Q ss_pred HhCCCCHHHHHHH
Q 010637 211 HVGGLSNAELAEI 223 (505)
Q Consensus 211 ~~g~l~~~~i~~v 223 (505)
+.-|.+.+-|.+-
T Consensus 225 qIi~AP~eMIekQ 237 (340)
T COG4007 225 QIIGAPKEMIEKQ 237 (340)
T ss_pred HHhCCcHHHHHHH
Confidence 6554666655444
No 138
>PRK06932 glycerate dehydrogenase; Provisional
Probab=98.55 E-value=5.3e-07 Score=91.82 Aligned_cols=106 Identities=12% Similarity=0.152 Sum_probs=88.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|+.+..-|.+|.+||+.... .. . ....++++++.. +|+|++++|-....
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~-~----------~~~~~l~ell~~---sDiv~l~~Plt~~T 211 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC-R----------EGYTPFEEVLKQ---ADIVTLHCPLTETT 211 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc-c----------cccCCHHHHHHh---CCEEEEcCCCChHH
Confidence 57999999999999999999999999999986421 10 0 113588998887 99999999988888
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeE
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
+..+ .+.+..+++|.++|+++-+..-+...+.+.+.+..+..
T Consensus 212 ~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~g 254 (314)
T PRK06932 212 QNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAG 254 (314)
T ss_pred hcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccE
Confidence 8888 67778899999999999999999999999998765543
No 139
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.55 E-value=2.8e-07 Score=95.63 Aligned_cols=106 Identities=11% Similarity=0.171 Sum_probs=85.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch-
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP- 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~- 85 (505)
++|||||+|.||+.+|+.|..-|.+|.+||+.... ... .....+++++++. ||+|++.+|-...
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~------~~~------~~~~~~L~ell~~---sDiI~lh~PLt~~g 181 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD------RGD------EGDFRSLDELVQE---ADILTFHTPLFKDG 181 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc------ccc------ccccCCHHHHHhh---CCEEEEeCCCCCCc
Confidence 57999999999999999999999999999975321 110 0124689999887 9999999986542
Q ss_pred ---HHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCe
Q 010637 86 ---VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 86 ---v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
....+ ++.+..+++|.++|+++-+..-+...+.+.+++..+.
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ 227 (378)
T PRK15438 182 PYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKL 227 (378)
T ss_pred ccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCc
Confidence 55556 5777889999999999999999999999998875443
No 140
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.53 E-value=2.8e-07 Score=93.94 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=85.0
Q ss_pred CcEEEEcccHHHHHHHHHHHh--CCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAE--KGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~--~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|+|||+|.||..++..+.. ...+|.+|||++++.+++.+.....+ .++..+.++++++.. +|+|+.+++...
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g-~~~~~~~~~~~av~~---aDIVi~aT~s~~ 201 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQG-FDAEVVTDLEAAVRQ---ADIISCATLSTE 201 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcC-CceEEeCCHHHHHhc---CCEEEEeeCCCC
Confidence 579999999999999985554 45789999999999999887642211 136678899988877 999988888753
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (505)
.++.. ..+++|. +|++.++.+...+++...+.+++..|+|-
T Consensus 202 ---pvl~~--~~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~~vD~ 242 (314)
T PRK06141 202 ---PLVRG--EWLKPGT-HLDLVGNFTPDMRECDDEAIRRASVYVDT 242 (314)
T ss_pred ---CEecH--HHcCCCC-EEEeeCCCCcccccCCHHHHhcCcEEEcC
Confidence 33321 3467887 67777777667777776666666677774
No 141
>PLN02306 hydroxypyruvate reductase
Probab=98.45 E-value=1.7e-06 Score=90.29 Aligned_cols=128 Identities=9% Similarity=0.139 Sum_probs=93.7
Q ss_pred CcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChHH-HHHHHHhhcc----cC--CCCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSK-VDETLDRAHR----EG--QLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La-~~G~~V~v~dr~~~~-~~~l~~~~~~----~g--~~~i~~~~s~~e~v~~l~~advIil 78 (505)
++|||||+|.+|+.+|+.|. .-|.+|.+||++... .+.+...... .+ ..++....+++++++. +|+|++
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~---sDiV~l 242 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE---ADVISL 242 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhh---CCEEEE
Confidence 57999999999999999986 679999999998642 1211111000 00 0011224588998887 999999
Q ss_pred EcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCH
Q 010637 79 LVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 79 ~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~ 137 (505)
++|-....+..+ .+.+..+++|.++|+++-+..-+...+.+.+++..+.....-|+-.+
T Consensus 243 h~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~E 302 (386)
T PLN02306 243 HPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDE 302 (386)
T ss_pred eCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCC
Confidence 999888888888 67778899999999999999999999999998765544433454433
No 142
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.45 E-value=4.6e-07 Score=90.72 Aligned_cols=74 Identities=16% Similarity=0.275 Sum_probs=62.3
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG-~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|+|||.| .||.+||.+|.++|++|++|++.. .+++++++. +|+||++++....
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t---------------------~~l~e~~~~---ADIVIsavg~~~~ 215 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS---------------------TDAKALCRQ---ADIVVAAVGRPRL 215 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC---------------------CCHHHHHhc---CCEEEEecCChhc
Confidence 579999996 999999999999999999998653 256677776 9999999998766
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
++.+. +++|.+|||+|...
T Consensus 216 v~~~~------ik~GaiVIDvgin~ 234 (301)
T PRK14194 216 IDADW------LKPGAVVIDVGINR 234 (301)
T ss_pred ccHhh------ccCCcEEEEecccc
Confidence 66543 78999999998754
No 143
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=98.45 E-value=2.3e-05 Score=77.26 Aligned_cols=207 Identities=13% Similarity=0.124 Sum_probs=143.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChHHHHHHHH---------------hhcccCCCCeeeeCCHHHHHh
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLD---------------RAHREGQLPLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G--~~V~v~dr~~~~~~~l~~---------------~~~~~g~~~i~~~~s~~e~v~ 68 (505)
|+||+-||+|.+|.+-...++-+- .+|++.|.+..++.+... .... .++...++.+..+.
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crg---knlffstdiekai~ 77 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRG---KNLFFSTDIEKAIK 77 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcC---CceeeecchHHHhh
Confidence 368999999999999887777553 578899999887654432 1111 25777888888888
Q ss_pred hcCCCcEEEEEcCCCc--------------hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHH--HCCCeE--Ee
Q 010637 69 SIQRPRSVIILVKAGS--------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEAS--QKGLLY--LG 130 (505)
Q Consensus 69 ~l~~advIil~vp~~~--------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~--~~gi~~--i~ 130 (505)
. +|+||++|..+. -+++....+.......+||+.-||......+.+.+.+. .+|++| +.
T Consensus 78 e---adlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqils 154 (481)
T KOG2666|consen 78 E---ADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILS 154 (481)
T ss_pred h---cceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEecc
Confidence 7 999999995432 23444455666666778999999999999888888875 347766 33
Q ss_pred CCCCCCH---HHhhcCC-ccccCCC--HHHHHHHHH---HHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhH
Q 010637 131 MGVSGGE---EGARHGP-SLMPGGS--FEAYNNIRD---ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQL 201 (505)
Q Consensus 131 ~pvsGg~---~~a~~G~-~im~gg~--~ea~~~v~~---ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~ 201 (505)
-|-+-.+ ..-...| .++.||. +|-++.++. +++..-.+ ..+ .....=++...|++.|++.+--+..
T Consensus 155 npeflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~----~~i-ittntwsselsklaanaflaqriss 229 (481)
T KOG2666|consen 155 NPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPR----EQI-ITTNTWSSELSKLAANAFLAQRISS 229 (481)
T ss_pred ChHHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcc----cce-eeccccHHHHHHHHHHHHHHHHHhh
Confidence 3422211 1112234 6778884 454444444 44443310 122 2334567889999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHH
Q 010637 202 ISEAYDVLKHVGGLSNAELAEIF 224 (505)
Q Consensus 202 i~Ea~~l~~~~g~l~~~~i~~v~ 224 (505)
++-..++++..| .+..++..++
T Consensus 230 ins~salceatg-adv~eva~av 251 (481)
T KOG2666|consen 230 INSMSALCEATG-ADVSEVAYAV 251 (481)
T ss_pred hHHHHHHHHhcC-CCHHHHHHHh
Confidence 999999999998 9988888775
No 144
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.43 E-value=1e-06 Score=79.60 Aligned_cols=107 Identities=19% Similarity=0.203 Sum_probs=76.6
Q ss_pred EEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhccc----CCCCe---eeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE----GQLPL---TGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 9 IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~----g~~~i---~~~~s~~e~v~~l~~advIil~vp 81 (505)
|.|+|+|.||.-+|..|++.|++|.++.|++ +.+.+.+.+..- +...+ ....+..+... .+|+||+|++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAG---PYDLVIVAVK 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHS---TESEEEE-SS
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccC---CCcEEEEEec
Confidence 7899999999999999999999999999999 777776654210 00001 11112212223 3899999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHH
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEA 121 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l 121 (505)
.. +++++++.+.+.+.+++.|+-..|+.... +.+.+.+
T Consensus 77 a~-~~~~~l~~l~~~~~~~t~iv~~qNG~g~~-~~l~~~~ 114 (151)
T PF02558_consen 77 AY-QLEQALQSLKPYLDPNTTIVSLQNGMGNE-EVLAEYF 114 (151)
T ss_dssp GG-GHHHHHHHHCTGEETTEEEEEESSSSSHH-HHHHCHS
T ss_pred cc-chHHHHHHHhhccCCCcEEEEEeCCCCcH-HHHHHHc
Confidence 95 78999999999999998999888986433 3344443
No 145
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=98.39 E-value=2.4e-06 Score=86.45 Aligned_cols=109 Identities=14% Similarity=0.216 Sum_probs=90.7
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
+-++|||+|+|.+|+.+|++|..-|..+..++|++...+...+... . ..+.+++..+ +|+|++++|...
T Consensus 161 ~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~-------~-~~d~~~~~~~---sD~ivv~~pLt~ 229 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYA-------E-FVDIEELLAN---SDVIVVNCPLTK 229 (336)
T ss_pred cCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcc-------c-ccCHHHHHhh---CCEEEEecCCCH
Confidence 3468999999999999999999999455566787776666554432 1 4588888887 999999999999
Q ss_pred hHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC
Q 010637 85 PVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124 (505)
Q Consensus 85 ~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~ 124 (505)
....++ .++...+++|.+||+++-+..-+.+.+.+.+++-
T Consensus 230 ~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG 270 (336)
T KOG0069|consen 230 ETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSG 270 (336)
T ss_pred HHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcC
Confidence 999999 5788899999999999999999998888888764
No 146
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.36 E-value=9.1e-06 Score=70.30 Aligned_cols=112 Identities=14% Similarity=0.211 Sum_probs=81.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK--GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~--G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+||||||+|.+|......+.+. +++|. ++|+++++.+.+.+.. ++..++|.+++.+. ...|+|++++|+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~------~~~~~~~~~~ll~~-~~~D~V~I~tp~~ 73 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY------GIPVYTDLEELLAD-EDVDAVIIATPPS 73 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT------TSEEESSHHHHHHH-TTESEEEEESSGG
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh------cccchhHHHHHHHh-hcCCEEEEecCCc
Confidence 3799999999999999998877 45654 7899999988886653 46689999999984 2489999999997
Q ss_pred chHHHHHHHHHhcCCCCcEEEec-CCCCchhHHHHHHHHHHCCCeE
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDG-GNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~-st~~~~~t~~~~~~l~~~gi~~ 128 (505)
...+-+...+.... .++++- -.....+.+++.+..+++|..+
T Consensus 74 ~h~~~~~~~l~~g~---~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 74 SHAEIAKKALEAGK---HVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp GHHHHHHHHHHTTS---EEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred chHHHHHHHHHcCC---EEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 65444433332211 566663 2235567777888777777653
No 147
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.35 E-value=2.7e-06 Score=85.97 Aligned_cols=110 Identities=17% Similarity=0.097 Sum_probs=78.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+++|||+|.+|..++..|...|.+|+++||++++.+.....+.. .....++.+.+. .+|+||.++|...
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~-----~~~~~~l~~~l~---~aDiVI~t~p~~~-- 222 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLS-----PFHLSELAEEVG---KIDIIFNTIPALV-- 222 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCe-----eecHHHHHHHhC---CCCEEEECCChhh--
Confidence 589999999999999999999999999999998876655543311 111223444444 4999999998642
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (505)
+-++....++++.+|||.++..-. +. . +..+++|+..+.+
T Consensus 223 --i~~~~l~~~~~g~vIIDla~~pgg-td-~-~~a~~~Gv~~~~~ 262 (296)
T PRK08306 223 --LTKEVLSKMPPEALIIDLASKPGG-TD-F-EYAEKRGIKALLA 262 (296)
T ss_pred --hhHHHHHcCCCCcEEEEEccCCCC-cC-e-eehhhCCeEEEEE
Confidence 224556678899999999886544 32 1 3456678877764
No 148
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=98.33 E-value=2e-06 Score=85.89 Aligned_cols=116 Identities=21% Similarity=0.253 Sum_probs=81.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc--
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS-- 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~-- 84 (505)
+++.|+|+|.+|.+++..|++.|++|.++||++++.+++.+.....+ .+. ..+..+.. +..+|+||.++|.+.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~--~~~-~~~~~~~~--~~~~DivInatp~gm~~ 192 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYG--EIQ-AFSMDELP--LHRVDLIINATSAGMSG 192 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcC--ceE-Eechhhhc--ccCccEEEECCCCCCCC
Confidence 47999999999999999999999999999999999888776532111 122 22333322 234899999999862
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
.++.+.- ....+.++.+++|++...+.+ .+.+..+++|.++++
T Consensus 193 ~~~~~~~-~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~~vd 235 (270)
T TIGR00507 193 NIDEPPV-PAEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTKTID 235 (270)
T ss_pred CCCCCCC-CHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeeeC
Confidence 1211100 023467889999998876644 577778888887765
No 149
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.32 E-value=2.1e-05 Score=74.59 Aligned_cols=124 Identities=8% Similarity=0.069 Sum_probs=85.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+|+|||. |.||+.++..|.++||.|++ .+ +|+||+|+|.. .
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~---------------------------------~~---~DlVilavPv~-~ 43 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVYI---------------------------------KK---ADHAFLSVPID-A 43 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEEE---------------------------------CC---CCEEEEeCCHH-H
Confidence 58999988 99999999999999999861 11 89999999995 6
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC-CCCCCHHHhhcC---Ccccc--CCCHHHHHHHH
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEGARHG---PSLMP--GGSFEAYNNIR 159 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsGg~~~a~~G---~~im~--gg~~ea~~~v~ 159 (505)
+.++++++. .+|+|.++....- .+ .+..|++. |+.| ++.+..+ ..+++ ..++++.+.++
T Consensus 44 ~~~~i~~~~------~~v~Dv~SvK~~i----~~----~~~~~vg~HPMfG-p~~a~~~lf~~~iv~~~~~~~~~~~~~~ 108 (197)
T PRK06444 44 ALNYIESYD------NNFVEISSVKWPF----KK----YSGKIVSIHPLFG-PMSYNDGVHRTVIFINDISRDNYLNEIN 108 (197)
T ss_pred HHHHHHHhC------CeEEeccccCHHH----HH----hcCCEEecCCCCC-CCcCcccccceEEEECCCCCHHHHHHHH
Confidence 677776654 3799999987531 11 24578886 6665 4444433 33322 34667778888
Q ss_pred HHHHHHhcccCCCCceEEeCCCcchhhhhhH
Q 010637 160 DILQKVAAQVDDGPCVTYIGEGGSGNFVKMV 190 (505)
Q Consensus 160 ~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v 190 (505)
.+++ | ..++.+.+...-..+-.+
T Consensus 109 ~l~~--G------~~~~~~t~eeHD~~~A~i 131 (197)
T PRK06444 109 EMFR--G------YHFVEMTADEHDLLMSEI 131 (197)
T ss_pred HHHc--C------CEEEEeCHHHHHHHHHHH
Confidence 8887 6 467777765444444333
No 150
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.29 E-value=3.9e-06 Score=85.46 Aligned_cols=95 Identities=18% Similarity=0.129 Sum_probs=68.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.++|+|||+|.||..++..|...| .+|.++||++++.+++.+.... .+...++..+.+. .+|+||.+++.+.
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~----~~~~~~~~~~~l~---~aDvVi~at~~~~ 250 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG----NAVPLDELLELLN---EADVVISATGAPH 250 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC----eEEeHHHHHHHHh---cCCEEEECCCCCc
Confidence 468999999999999999999866 6899999999998888765321 1222233444444 4999999999875
Q ss_pred hHHHHHHHHHhcC-CCCcEEEecCC
Q 010637 85 PVDQTIAALSEHM-SPGDCIIDGGN 108 (505)
Q Consensus 85 ~v~~vl~~l~~~l-~~g~iIId~st 108 (505)
. ...+..+.... .++.++||.+.
T Consensus 251 ~-~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 251 Y-AKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred h-HHHHHHHHhhCCCCCeEEEEeCC
Confidence 5 44444444333 36789999985
No 151
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.25 E-value=1.8e-05 Score=82.08 Aligned_cols=127 Identities=17% Similarity=0.122 Sum_probs=92.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChHHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp~ 82 (505)
|++|-|||+|.+|+..|..|+++| ++|++-||+.++++++......+ ..... ..+.+.+.+-|++.|+||.+.|.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~--v~~~~vD~~d~~al~~li~~~d~VIn~~p~ 78 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGK--VEALQVDAADVDALVALIKDFDLVINAAPP 78 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcccc--ceeEEecccChHHHHHHHhcCCEEEEeCCc
Confidence 468999999999999999999999 99999999999999887653110 11111 23444555555568999999998
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeE-EeCCCCCCHHH
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY-LGMGVSGGEEG 139 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~-i~~pvsGg~~~ 139 (505)
.. -..+++. .++.|.-++|+|.-.+.. .++.....+.|+.. +++++.-|...
T Consensus 79 ~~-~~~i~ka---~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v~~~G~dPGi~n 131 (389)
T COG1748 79 FV-DLTILKA---CIKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAVLGCGFDPGITN 131 (389)
T ss_pred hh-hHHHHHH---HHHhCCCEEEcccCCchh-hhhhHHHHHcCeEEEcccCcCcchHH
Confidence 63 3344433 355788999998877664 66777777778765 45777766543
No 152
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.24 E-value=2.9e-06 Score=85.15 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=60.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEe-CChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYN-RTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~d-r~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
++|+||| .|.||.+||.+|.++|++|++|+ |++ +++++++. +|+||+|++...
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~----------------------~l~e~~~~---ADIVIsavg~~~ 213 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR----------------------DLPAVCRR---ADILVAAVGRPE 213 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC----------------------CHHHHHhc---CCEEEEecCChh
Confidence 5799999 99999999999999999999995 553 34455665 999999999976
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
.++.++ +.+|.+|||+|...
T Consensus 214 ~v~~~~------lk~GavVIDvGin~ 233 (296)
T PRK14188 214 MVKGDW------IKPGATVIDVGINR 233 (296)
T ss_pred hcchhe------ecCCCEEEEcCCcc
Confidence 555443 78999999998754
No 153
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.18 E-value=1e-05 Score=82.25 Aligned_cols=104 Identities=18% Similarity=0.186 Sum_probs=67.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHh----hcccC-CCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDR----AHREG-QLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~----~~~~g-~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|+||+|||+|.||..+|..++..|+ +|.++|+++++.+..... ....+ ..+++.+.+.+++ .. +|+||++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~-~~---aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYEDI-AG---SDVVVIT 77 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHH-CC---CCEEEEC
Confidence 4699999999999999999999876 999999998765432211 11000 0134444566543 33 9999998
Q ss_pred cCCC---------------chHHHHHHHHHhcCCCCcEEEecCCCCchhH
Q 010637 80 VKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (505)
Q Consensus 80 vp~~---------------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (505)
+..+ ..+++++..+.+.. ++.++|..||-....+
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~d~~~ 126 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPVDAMT 126 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHH
Confidence 7321 12445556666665 5567777777543333
No 154
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.17 E-value=4.6e-06 Score=74.35 Aligned_cols=97 Identities=16% Similarity=0.147 Sum_probs=67.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..++.|||+|-||+.++..|++.|.+ |+++||+.++.+++.+...... ..+...+++.+.... +|+||.++|.+.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~-~~~~~~~~~~~~~~~---~DivI~aT~~~~ 87 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVN-IEAIPLEDLEEALQE---ADIVINATPSGM 87 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCS-EEEEEGGGHCHHHHT---ESEEEE-SSTTS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccc-cceeeHHHHHHHHhh---CCeEEEecCCCC
Confidence 45799999999999999999999987 9999999999999987652210 012334445545554 999999999885
Q ss_pred hHHHHHHHHHhcCCCC-cEEEecCC
Q 010637 85 PVDQTIAALSEHMSPG-DCIIDGGN 108 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g-~iIId~st 108 (505)
. .+-.+..+...+. .+++|.+.
T Consensus 88 ~--~i~~~~~~~~~~~~~~v~Dla~ 110 (135)
T PF01488_consen 88 P--IITEEMLKKASKKLRLVIDLAV 110 (135)
T ss_dssp T--SSTHHHHTTTCHHCSEEEES-S
T ss_pred c--ccCHHHHHHHHhhhhceecccc
Confidence 4 1113333322222 49999973
No 155
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=98.15 E-value=3.8e-06 Score=85.07 Aligned_cols=105 Identities=39% Similarity=0.701 Sum_probs=93.8
Q ss_pred hhhhHhhhHHHhHhhHHHHHHHHHHHhC-CCCHHHHHHHHHHhccCC-cchhHHhhhhhhccccccCCCchhHHHHHhhh
Q 010637 186 FVKMVHNGIEYGDMQLISEAYDVLKHVG-GLSNAELAEIFDEWNKGE-LESFLVEITADIFKVKDEYGEGELVDKILDKT 263 (505)
Q Consensus 186 ~vK~v~N~i~~~~~~~i~Ea~~l~~~~g-~l~~~~i~~v~~~~~~g~-~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~ 263 (505)
++|++||++.++.++.++|++.++++.| |+|++++.++ |+.|. ++||+++++.+++.+++ .++.+.+.+
T Consensus 169 ~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i---~~~g~~~~s~~l~~~~~~~~~~~------~~~~~~~~~ 239 (298)
T TIGR00872 169 FVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARV---WRRGSVIRSWLLDLTAIAFRESP------DLAEFSGRV 239 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHH---HcCCchhHhHHHHHHHHHHhcCC------cHHHHHHHH
Confidence 6899999999999999999999999974 3799999888 78876 69999999999987632 456788888
Q ss_pred CCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcch
Q 010637 264 GMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299 (505)
Q Consensus 264 ~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~ 299 (505)
.++++|+|++.+|.++|+|+|++++|++.|+.|..+
T Consensus 240 ~~~~~~r~~v~~a~~~g~p~P~~~~al~~~~~~~~~ 275 (298)
T TIGR00872 240 SDSGEGRWTVIAAIDLGVPAPVIATSLQSRFASRDL 275 (298)
T ss_pred HhhccHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 899999999999999999999999999999999876
No 156
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.10 E-value=1.4e-05 Score=82.00 Aligned_cols=97 Identities=21% Similarity=0.208 Sum_probs=73.1
Q ss_pred CcEEEEcccHHHHHHHHHHHh--CCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAE--KGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~--~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.++||||+|.||...+..|.. ...+|.+|||++++.+.+.+.....| ..+..+.++++++++ +|+|++|+|+..
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g-~~v~~~~~~~eav~~---aDiVitaT~s~~ 204 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYE-VPVRAATDPREAVEG---CDILVTTTPSRK 204 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhC-CcEEEeCCHHHHhcc---CCEEEEecCCCC
Confidence 579999999999997666654 45689999999999988876532211 136778999999987 999999999875
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCch
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (505)
+ ++. ...+++|..|...++..|.
T Consensus 205 P---~~~--~~~l~~g~~v~~vGs~~p~ 227 (325)
T TIGR02371 205 P---VVK--ADWVSEGTHINAIGADAPG 227 (325)
T ss_pred c---Eec--HHHcCCCCEEEecCCCCcc
Confidence 4 321 1246889999888876653
No 157
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.06 E-value=1.7e-05 Score=78.18 Aligned_cols=86 Identities=16% Similarity=0.301 Sum_probs=69.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHH-HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|+|||.|.-|.+-|+||.++|.+|++--|.... .+...+.+ +. ..+++|++.. +|+|++.+|+. .
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dG-------f~-V~~v~ea~k~---ADvim~L~PDe-~ 86 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDG-------FK-VYTVEEAAKR---ADVVMILLPDE-Q 86 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcC-------CE-eecHHHHhhc---CCEEEEeCchh-h
Confidence 57999999999999999999999999988777665 33333332 34 5689999887 99999999995 5
Q ss_pred HHHHHH-HHHhcCCCCcEEE
Q 010637 86 VDQTIA-ALSEHMSPGDCII 104 (505)
Q Consensus 86 v~~vl~-~l~~~l~~g~iII 104 (505)
-.+|++ ++.|.|++|+.+.
T Consensus 87 q~~vy~~~I~p~Lk~G~aL~ 106 (338)
T COG0059 87 QKEVYEKEIAPNLKEGAALG 106 (338)
T ss_pred HHHHHHHHhhhhhcCCceEE
Confidence 567775 8999999998654
No 158
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.04 E-value=4.6e-05 Score=77.92 Aligned_cols=105 Identities=16% Similarity=0.205 Sum_probs=66.9
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHH--H--HHhhcccC-CCCeeeeCCHHHHHhhcCCCc
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDE--T--LDRAHREG-QLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~--l--~~~~~~~g-~~~i~~~~s~~e~v~~l~~ad 74 (505)
|.|-..+||+|||+|.||..+|..++..|+ +|.++|+++++.+. + .......+ ..+++.+.+.+++ .+ +|
T Consensus 1 ~~~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l-~~---aD 76 (321)
T PTZ00082 1 MTMIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDI-AG---SD 76 (321)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHh-CC---CC
Confidence 555556799999999999999999999996 89999999985421 1 11100000 0135555676544 33 99
Q ss_pred EEEEEcCC----Cc----------------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 75 SVIILVKA----GS----------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 75 vIil~vp~----~~----------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+||++.-. +. .++++++.+.+.. +..++|..||..
T Consensus 77 iVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~ 131 (321)
T PTZ00082 77 VVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPL 131 (321)
T ss_pred EEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 99997622 11 1334445555555 445777777754
No 159
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.04 E-value=6.6e-05 Score=71.15 Aligned_cols=120 Identities=18% Similarity=0.216 Sum_probs=78.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCc-EEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK--GFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~--G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
++||+||+|.+|..+...+.+. .++ |.+|||+.+++.++.+... ...+++++|+++. +|+++.|-..
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~------~~~~s~ide~~~~---~DlvVEaAS~- 70 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVG------RRCVSDIDELIAE---VDLVVEAASP- 70 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcC------CCccccHHHHhhc---cceeeeeCCH-
Confidence 4799999999999999877754 344 6799999999988776432 3345889999866 9999999866
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeE--EeCCCCCCH
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY--LGMGVSGGE 137 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~--i~~pvsGg~ 137 (505)
+++++...+++.. ..+-+|+..+.-..+...++...+.+.+-+. +..+-.||-
T Consensus 71 ~Av~e~~~~~L~~-g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiGGl 125 (255)
T COG1712 71 EAVREYVPKILKA-GIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIGGL 125 (255)
T ss_pred HHHHHHhHHHHhc-CCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCccchhH
Confidence 4666666555432 1234555555544444444444455554433 333444543
No 160
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.01 E-value=1.8e-05 Score=69.03 Aligned_cols=98 Identities=17% Similarity=0.220 Sum_probs=63.2
Q ss_pred cEEEEc-ccHHHHHHHHHHHhC-CCcEEEE-eCChHHHHHHHHhhcccCCCCee-eeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 8 RIGLAG-LAVMGQNLALNVAEK-GFPISVY-NRTTSKVDETLDRAHREGQLPLT-GHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~-G~~V~v~-dr~~~~~~~l~~~~~~~g~~~i~-~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
||+||| .|.+|..++..|.++ ++++... +++.++.+.+...+.... ++. ...+..++.. ..+|+||+|+|++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~DvV~~~~~~~ 76 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLK--GEVVLELEPEDFEE--LAVDIVFLALPHG 76 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccc--cccccccccCChhh--cCCCEEEEcCCcH
Confidence 689999 499999999999985 7887755 666543333333321100 010 0111122221 2489999999997
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
....++..+.+.+.+|.+|||+|+..
T Consensus 77 -~~~~~~~~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 77 -VSKEIAPLLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred -HHHHHHHHHHhhhcCCCEEEECCccc
Confidence 55556555666678999999999875
No 161
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=98.00 E-value=0.00011 Score=71.19 Aligned_cols=99 Identities=20% Similarity=0.312 Sum_probs=71.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHh-hcccCCCCeeeeCCHHHHHhh--cCCCcEEEEEcCCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-AHREGQLPLTGHYTPRDFVLS--IQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~-~~~~g~~~i~~~~s~~e~v~~--l~~advIil~vp~~ 83 (505)
|+|.|||+|.+|..+|+.|.+.||+|.+.|+++++++++... .... -+....+-.++.++ +..+|+++.++..+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~---~v~gd~t~~~~L~~agi~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTH---VVIGDATDEDVLEEAGIDDADAVVAATGND 77 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceE---EEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence 589999999999999999999999999999999999886552 1110 13334444455443 46799999999886
Q ss_pred chHHHHHHHHHhc-CCCCcEEEecCCC
Q 010637 84 SPVDQTIAALSEH-MSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~-l~~g~iIId~st~ 109 (505)
.+..++-.+... +....+|.-..+.
T Consensus 78 -~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 78 -EVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred -HHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 567676655533 5555666665554
No 162
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.99 E-value=1.5e-05 Score=79.45 Aligned_cols=74 Identities=14% Similarity=0.249 Sum_probs=61.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|+|||. |.||.+||.+|.++|++|++|... +.++++.+.. +|+||.+++....
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~---------------------t~~l~~~~~~---ADIVI~avg~~~~ 214 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR---------------------TRNLAEVARK---ADILVVAIGRGHF 214 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC---------------------CCCHHHHHhh---CCEEEEecCcccc
Confidence 57999999 999999999999999999999311 2367777776 9999999998876
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
++... +++|.+|||+|...
T Consensus 215 v~~~~------ik~GavVIDvgin~ 233 (284)
T PRK14179 215 VTKEF------VKEGAVVIDVGMNR 233 (284)
T ss_pred CCHHH------ccCCcEEEEeccee
Confidence 66543 78999999998764
No 163
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.99 E-value=4e-05 Score=77.82 Aligned_cols=106 Identities=19% Similarity=0.214 Sum_probs=70.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHH----HHhhcccC-CCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDET----LDRAHREG-QLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l----~~~~~~~g-~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|||+|||+|.||..+|..|+.+|+ +|.++|++++..+.. .+...... ..+++.+.+.+++ .+ +|+||+++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~~-~~---aDiVIita 77 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADT-AN---SDIVVITA 77 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHHh-CC---CCEEEEcC
Confidence 589999999999999999999887 899999977654311 11111000 0146666787774 44 99999999
Q ss_pred CCC---------------chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHH
Q 010637 81 KAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERR 117 (505)
Q Consensus 81 p~~---------------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~ 117 (505)
+.+ ..++++++.+.++. ++.+||..||-....+.-.
T Consensus 78 g~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~di~t~~~ 128 (305)
T TIGR01763 78 GLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPLDAMTYVA 128 (305)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHH
Confidence 732 12344446666664 5678888888544344333
No 164
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.95 E-value=4.2e-05 Score=67.13 Aligned_cols=107 Identities=21% Similarity=0.277 Sum_probs=70.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHh-CCCcEE-EEeCChH-H----HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 7 SRIGLAGL-AVMGQNLALNVAE-KGFPIS-VYNRTTS-K----VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~-~G~~V~-v~dr~~~-~----~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
|||+|+|+ |.||+.++..+.+ .|+++. +++|+++ . +.++.... . .++...++++++.+. +|+||-
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~---~~~~v~~~l~~~~~~---~DVvID 73 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-P---LGVPVTDDLEELLEE---ADVVID 73 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T----SSBEBS-HHHHTTH----SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-C---cccccchhHHHhccc---CCEEEE
Confidence 58999999 9999999999998 688855 6788872 1 11222111 1 146778999999888 999998
Q ss_pred EcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC
Q 010637 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~ 124 (505)
...+ ..+.+.++.... .|..+|-++|+......+..+.+.++
T Consensus 74 fT~p-~~~~~~~~~~~~---~g~~~ViGTTG~~~~~~~~l~~~a~~ 115 (124)
T PF01113_consen 74 FTNP-DAVYDNLEYALK---HGVPLVIGTTGFSDEQIDELEELAKK 115 (124)
T ss_dssp ES-H-HHHHHHHHHHHH---HT-EEEEE-SSSHHHHHHHHHHHTTT
T ss_pred cCCh-HHhHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHHhcc
Confidence 8733 355555554444 47888888998865555555555554
No 165
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.90 E-value=4.8e-05 Score=81.93 Aligned_cols=105 Identities=13% Similarity=0.244 Sum_probs=75.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++++|+|+|.+|.+++..|++.|++|.++||++++.+.+.+.... . ..+.+++ ..+..+|+||.|+|.+..+
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~------~-~~~~~~~-~~l~~~DiVInatP~g~~~ 404 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQG------K-AFPLESL-PELHRIDIIINCLPPSVTI 404 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc------c-eechhHh-cccCCCCEEEEcCCCCCcc
Confidence 579999999999999999999999999999999988887654211 1 1122222 1234599999999998654
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
... +. .+++|+....+.+. +.+..+++|...++
T Consensus 405 ~~~-------l~--~~v~D~~Y~P~~T~--ll~~A~~~G~~~~~ 437 (477)
T PRK09310 405 PKA-------FP--PCVVDINTLPKHSP--YTQYARSQGSSIIY 437 (477)
T ss_pred hhH-------Hh--hhEEeccCCCCCCH--HHHHHHHCcCEEEC
Confidence 321 11 38999988765443 66777778876554
No 166
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.90 E-value=2.3e-05 Score=81.95 Aligned_cols=87 Identities=20% Similarity=0.232 Sum_probs=67.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCC------hHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRT------TSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~------~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
++|+|||+|..|.+.|.||...|++|++--|. .+..+.+.+.+ +.+ .+++|++.. +|+|++.+
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dG-------F~v-~~~~Ea~~~---ADvVviLl 105 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENG-------FKV-GTYEELIPQ---ADLVINLT 105 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcC-------Ccc-CCHHHHHHh---CCEEEEcC
Confidence 58999999999999999999999999954443 33444433332 333 678888887 99999999
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEe
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIID 105 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId 105 (505)
|+. .-..+.+++.|.+++|.++.-
T Consensus 106 PDt-~q~~v~~~i~p~LK~Ga~L~f 129 (487)
T PRK05225 106 PDK-QHSDVVRAVQPLMKQGAALGY 129 (487)
T ss_pred ChH-HHHHHHHHHHhhCCCCCEEEe
Confidence 997 456666899999999987754
No 167
>PLN00203 glutamyl-tRNA reductase
Probab=97.89 E-value=5.2e-05 Score=82.05 Aligned_cols=99 Identities=16% Similarity=0.172 Sum_probs=66.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..+|+|||+|.||..++.+|...|. +|+++||++++.+.+.+...... ..+...+++.+.+.. +|+||.+++.+.
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~-i~~~~~~dl~~al~~---aDVVIsAT~s~~ 341 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVE-IIYKPLDEMLACAAE---ADVVFTSTSSET 341 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCc-eEeecHhhHHHHHhc---CCEEEEccCCCC
Confidence 3579999999999999999999997 69999999999998886532100 011223445555554 999999987765
Q ss_pred h--HHHHHHHHHhcC---CCCcEEEecCC
Q 010637 85 P--VDQTIAALSEHM---SPGDCIIDGGN 108 (505)
Q Consensus 85 ~--v~~vl~~l~~~l---~~g~iIId~st 108 (505)
. ..+.++.+.+.- .+..++||.+-
T Consensus 342 pvI~~e~l~~~~~~~~~~~~~~~~IDLAv 370 (519)
T PLN00203 342 PLFLKEHVEALPPASDTVGGKRLFVDISV 370 (519)
T ss_pred CeeCHHHHHHhhhcccccCCCeEEEEeCC
Confidence 4 233344433211 12247888754
No 168
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.86 E-value=0.00016 Score=73.48 Aligned_cols=97 Identities=16% Similarity=0.178 Sum_probs=60.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChHHHHH-HHHhhcccCC-CC-eeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDE-TLDRAHREGQ-LP-LTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G--~~V~v~dr~~~~~~~-l~~~~~~~g~-~~-i~~~~s~~e~v~~l~~advIil~vp 81 (505)
|||+|||+|.+|.++|..|+.+| .+|.++|+++++.+. ..+....... .. ...+.+.++ +. .+|+||++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~-l~---~aDiViita~ 76 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYAD-CK---GADVVVITAG 76 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHH-hC---CCCEEEEccC
Confidence 48999999999999999999999 589999999887653 2211100000 01 112344444 33 4999999997
Q ss_pred CCc---------------hHHHHHHHHHhcCCCCcEEEecCC
Q 010637 82 AGS---------------PVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 82 ~~~---------------~v~~vl~~l~~~l~~g~iIId~st 108 (505)
.+. .++++++.+..+-+. .+++..+|
T Consensus 77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~-giiiv~tN 117 (308)
T cd05292 77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPD-AILLVVTN 117 (308)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEEecC
Confidence 631 133444566665544 44555554
No 169
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.86 E-value=9e-05 Score=75.08 Aligned_cols=117 Identities=9% Similarity=0.103 Sum_probs=82.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-C-CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK-G-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~-G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.++||||+|..|...+..++.- . -+|.+|||++++.++|.++.....+..+.+++++++++.. +|+|+.++++..
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~---aDIV~taT~s~~ 194 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRD---ADTITSITNSDT 194 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc---CCEEEEecCCCC
Confidence 4799999999999998888753 2 3799999999999998766432101247788999999988 999999999875
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (505)
+ +++ ...+++|..|.-.++..|...+--.+.+.....-|+|.
T Consensus 195 P---~~~--~~~l~pg~hV~aiGs~~p~~~El~~~~l~~a~~v~vD~ 236 (301)
T PRK06407 195 P---IFN--RKYLGDEYHVNLAGSNYPNRREAEHSVLNDADIVVTEH 236 (301)
T ss_pred c---Eec--HHHcCCCceEEecCCCCCCcccCCHHHHHhCCEEEECC
Confidence 3 331 12467888888887766643322223333333446663
No 170
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.86 E-value=9.3e-05 Score=75.88 Aligned_cols=116 Identities=13% Similarity=0.089 Sum_probs=80.0
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CC-CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAE-KG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~-~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|+|||+|.+|...+..++. .+ -+|.+|||++++.+++.+......+..+..+.+.++++.. +|+|+.++|...
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---aDiVi~aT~s~~ 204 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEE---ADIIVTVTNAKT 204 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc---CCEEEEccCCCC
Confidence 479999999999998887763 34 4799999999999888764321100134567888888876 999999999874
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (505)
. ++. ..+++|..|+..++..|...+--...+..-..-|+|.
T Consensus 205 p---~i~---~~l~~G~hV~~iGs~~p~~~E~~~~~~~~a~~vvvD~ 245 (325)
T PRK08618 205 P---VFS---EKLKKGVHINAVGSFMPDMQELPSEAIARANKVVVES 245 (325)
T ss_pred c---chH---HhcCCCcEEEecCCCCcccccCCHHHHhhCCEEEECC
Confidence 3 443 4578999999888876644332223333322235554
No 171
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.85 E-value=0.00013 Score=74.03 Aligned_cols=87 Identities=10% Similarity=0.218 Sum_probs=60.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCCh-HHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~-G~~V~-v~dr~~-~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+.||+|||+|.||..++..+.++ ++++. ++++++ ++.. +.. ++....+..++.. ++|+|++|+|+
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~---~~~------~v~~~~d~~e~l~---~iDVViIctPs 70 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD---TET------PVYAVADDEKHLD---DVDVLILCMGS 70 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh---hcC------CccccCCHHHhcc---CCCEEEEcCCC
Confidence 36999999999999999999876 78876 579985 4322 111 2333445555544 49999999998
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
....+ .+.+.|..|.-+||+.-
T Consensus 71 ~th~~----~~~~~L~aG~NVV~s~~ 92 (324)
T TIGR01921 71 ATDIP----EQAPYFAQFANTVDSFD 92 (324)
T ss_pred ccCHH----HHHHHHHcCCCEEECCC
Confidence 76543 34445667788888754
No 172
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.85 E-value=9.1e-05 Score=67.51 Aligned_cols=91 Identities=11% Similarity=0.121 Sum_probs=62.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
+++.|+|.|..|+++|+.|...|-+|+|++++|-+.-+....+ ++. .+.++++.. +|+||.++-....+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dG-------f~v-~~~~~a~~~---adi~vtaTG~~~vi 92 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDG-------FEV-MTLEEALRD---ADIFVTATGNKDVI 92 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT--------EE-E-HHHHTTT----SEEEE-SSSSSSB
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcC-------cEe-cCHHHHHhh---CCEEEECCCCcccc
Confidence 4699999999999999999999999999999997765555443 444 367887776 99999887664322
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCc
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~ 111 (505)
. .+..+.+++|.++.+.+....
T Consensus 93 ~---~e~~~~mkdgail~n~Gh~d~ 114 (162)
T PF00670_consen 93 T---GEHFRQMKDGAILANAGHFDV 114 (162)
T ss_dssp ----HHHHHHS-TTEEEEESSSSTT
T ss_pred C---HHHHHHhcCCeEEeccCcCce
Confidence 2 344556889999999887643
No 173
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.84 E-value=7.6e-05 Score=79.14 Aligned_cols=94 Identities=19% Similarity=0.182 Sum_probs=63.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|+|||+|.||..++..|...| .+|+++||++++.+.+.+.... ......++.+.+.. +|+||.|++.+..
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~----~~i~~~~l~~~l~~---aDvVi~aT~s~~~ 253 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG----EAVKFEDLEEYLAE---ADIVISSTGAPHP 253 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC----eEeeHHHHHHHHhh---CCEEEECCCCCCc
Confidence 57999999999999999999999 7899999999988877764321 11222344455554 9999999877654
Q ss_pred HH--HHHHHHHhcCCCCcEEEecC
Q 010637 86 VD--QTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 86 v~--~vl~~l~~~l~~g~iIId~s 107 (505)
+- +.+......-..+.+++|.+
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla 277 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIA 277 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeC
Confidence 31 12222211111234788886
No 174
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.84 E-value=0.00015 Score=77.07 Aligned_cols=89 Identities=12% Similarity=0.040 Sum_probs=69.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|||+|.+|..+|..|...|.+|+++++++.+.......+ +. ..+++++++. +|+|++++..
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G-------~~-~~~leell~~---ADIVI~atGt---- 319 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEG-------YQ-VVTLEDVVET---ADIFVTATGN---- 319 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcC-------ce-eccHHHHHhc---CCEEEECCCc----
Confidence 4799999999999999999999999999999987754433322 33 2467787776 9999998643
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCC
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~ 110 (505)
..++ .+....+++|.++++.+...
T Consensus 320 ~~iI~~e~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 320 KDIITLEHMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred ccccCHHHHhccCCCcEEEEcCCCc
Confidence 3455 36677789999999998873
No 175
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=97.83 E-value=0.00025 Score=71.11 Aligned_cols=101 Identities=15% Similarity=0.169 Sum_probs=74.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CC-----cEEEEeCChH------HHHHHHH-hhcccCCC-------CeeeeCCHHH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK--GF-----PISVYNRTTS------KVDETLD-RAHREGQL-------PLTGHYTPRD 65 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~--G~-----~V~v~dr~~~------~~~~l~~-~~~~~g~~-------~i~~~~s~~e 65 (505)
.||+|||.|++|+.+|+.+.++ ++ +|..|-+..+ ++.+... .+.+..++ ++...+++.+
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~e 101 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVE 101 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHH
Confidence 5799999999999999998864 22 5777754432 2222221 11111011 6777888888
Q ss_pred HHhhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCc
Q 010637 66 FVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 66 ~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~ 111 (505)
++.+ +|++|..+|. +.+..++++|..+++++...|.++.+..
T Consensus 102 a~~d---ADilvf~vPh-Qf~~~ic~~l~g~vk~~~~aISL~KG~e 143 (372)
T KOG2711|consen 102 AAKD---ADILVFVVPH-QFIPRICEQLKGYVKPGATAISLIKGVE 143 (372)
T ss_pred Hhcc---CCEEEEeCCh-hhHHHHHHHHhcccCCCCeEEEeeccee
Confidence 8876 9999999999 5899999999999999999999887754
No 176
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.82 E-value=0.00012 Score=74.37 Aligned_cols=96 Identities=14% Similarity=0.037 Sum_probs=73.8
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CC-CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAE-KG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~-~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|+|||+|.+|...+..+.. .+ .+|.+|||++++.+++.++....+ ..+. +.+.++++.+ +|+|+.++|...
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~-~~~~-~~~~~~av~~---aDiVitaT~s~~ 200 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALG-PTAE-PLDGEAIPEA---VDLVVTATTSRT 200 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC-CeeE-ECCHHHHhhc---CCEEEEccCCCC
Confidence 579999999999999999975 55 469999999999999887643211 1223 5788888877 999999999875
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchh
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLN 113 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~ 113 (505)
+ ++.. .+++|..|.-.++..|..
T Consensus 201 P---l~~~---~~~~g~hi~~iGs~~p~~ 223 (304)
T PRK07340 201 P---VYPE---AARAGRLVVAVGAFTPDM 223 (304)
T ss_pred c---eeCc---cCCCCCEEEecCCCCCCc
Confidence 4 3432 368999999888776643
No 177
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.81 E-value=7.4e-05 Score=77.91 Aligned_cols=98 Identities=16% Similarity=0.226 Sum_probs=69.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCee-eeCCHHHHHhhcCCCcEEEEEcCC-Cc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLT-GHYTPRDFVLSIQRPRSVIILVKA-GS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~-~~~s~~e~v~~l~~advIil~vp~-~~ 84 (505)
.+|.|||+|.+|...+..+...|.+|.++||++++.+.+...... .+. ...+.+++.+.++.+|+||.+++. +.
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~----~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG----RIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc----eeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 469999999999999999999999999999999988777654321 111 123445555555569999999743 11
Q ss_pred hHHHHH-HHHHhcCCCCcEEEecCC
Q 010637 85 PVDQTI-AALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 85 ~v~~vl-~~l~~~l~~g~iIId~st 108 (505)
....++ .+....++++.+|||.+.
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva~ 268 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVAI 268 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEec
Confidence 111222 455566789999999764
No 178
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=97.80 E-value=0.0001 Score=74.75 Aligned_cols=101 Identities=19% Similarity=0.174 Sum_probs=63.4
Q ss_pred EEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHH----HHhhcccC-CCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 9 IGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDET----LDRAHREG-QLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 9 IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l----~~~~~~~g-~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+|||+|.||..+|..|+.+|+ +|.++|+++++.+.. .......+ ..+++...+.+++ . .+|+||+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~l-~---dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDI-A---GSDVVVITAGI 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHHh-C---CCCEEEEecCC
Confidence 6899999999999999998887 999999998764321 11110000 0134444565543 3 39999998732
Q ss_pred C---------------chHHHHHHHHHhcCCCCcEEEecCCCCchhH
Q 010637 83 G---------------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (505)
Q Consensus 83 ~---------------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (505)
+ ..+++++..+.+.. +..++|..||-....+
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP~di~t 122 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNPLDVMT 122 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHH
Confidence 1 11334446666655 5567677776543333
No 179
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.80 E-value=0.00021 Score=70.24 Aligned_cols=119 Identities=13% Similarity=0.142 Sum_probs=76.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC---CcE-EEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG---FPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G---~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.+||||||+|.||..++..|.+.+ +++ .+++|++++.+++.+. ...+.++++++.. ++|+|+.|-.
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~--------~~~~~~l~~ll~~--~~DlVVE~A~ 71 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR--------VALLDGLPGLLAW--RPDLVVEAAG 71 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc--------CcccCCHHHHhhc--CCCEEEECCC
Confidence 468999999999999999987642 544 4789998888777653 3578899997432 3999999987
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCchh--HHH-HHHHHHHCC-CeEEeCCCCCCHH
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN--TER-RIHEASQKG-LLYLGMGVSGGEE 138 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~--t~~-~~~~l~~~g-i~~i~~pvsGg~~ 138 (505)
. .++++....++ ..|.-++-.|.+-..| ..+ +.+..++.| -.|+.++-.||-.
T Consensus 72 ~-~av~e~~~~iL---~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD 128 (267)
T PRK13301 72 Q-QAIAEHAEGCL---TAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLD 128 (267)
T ss_pred H-HHHHHHHHHHH---hcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHH
Confidence 6 36666665554 4454344444443333 333 333333333 3456666555543
No 180
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.79 E-value=6e-05 Score=80.11 Aligned_cols=94 Identities=20% Similarity=0.190 Sum_probs=64.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|+|||+|.||..++..|...|. +|+++||++++.+.+.+.... .+....+..+.+. .+|+||.+++.+..
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~----~~~~~~~~~~~l~---~aDvVI~aT~s~~~ 255 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG----EAIPLDELPEALA---EADIVISSTGAPHP 255 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC----cEeeHHHHHHHhc---cCCEEEECCCCCCc
Confidence 579999999999999999999997 799999999998877765321 1222233334444 49999999987654
Q ss_pred HHHHHHHHHhcC----CCCcEEEecCC
Q 010637 86 VDQTIAALSEHM----SPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l----~~g~iIId~st 108 (505)
+-. -+.+.+.+ ..+.++||.+.
T Consensus 256 ~i~-~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 256 IIG-KGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred EEc-HHHHHHHHhhccCCCeEEEEeCC
Confidence 321 12222222 24568889864
No 181
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.79 E-value=0.0002 Score=75.13 Aligned_cols=100 Identities=15% Similarity=0.098 Sum_probs=74.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|+|+|.+|..+|..+...|.+|.++|+++.+.......+ +.. .+.++++.. +|+||.++..
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G-------~~v-~~leeal~~---aDVVItaTG~---- 260 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDG-------FRV-MTMEEAAKI---GDIFITATGN---- 260 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcC-------CEe-CCHHHHHhc---CCEEEECCCC----
Confidence 4799999999999999999999999999999998765544332 333 356676665 9999987654
Q ss_pred HHHHH-HHHhcCCCCcEEEecCCCCc-hhHHHHHHHH
Q 010637 87 DQTIA-ALSEHMSPGDCIIDGGNEWY-LNTERRIHEA 121 (505)
Q Consensus 87 ~~vl~-~l~~~l~~g~iIId~st~~~-~~t~~~~~~l 121 (505)
..+++ .....+++|.++++.+.... -+...+.+.+
T Consensus 261 ~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~ 297 (406)
T TIGR00936 261 KDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELA 297 (406)
T ss_pred HHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHH
Confidence 34453 46678899999999888654 4445554443
No 182
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.77 E-value=0.001 Score=68.34 Aligned_cols=96 Identities=17% Similarity=0.213 Sum_probs=70.0
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CC-CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAE-KG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~-~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
++|+|||+|.+|...+..|+. .+ .+|.+|+|++++.+.+.++.....+..+..+.++++++.. +|+|+.++|...
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~---aDiVi~aT~s~~ 209 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAG---ADIIVTTTPSEE 209 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHcc---CCEEEEeeCCCC
Confidence 579999999999998888875 44 5799999999999998875422100134567888888876 999999998864
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+ ++.. ..+++|..|...+...
T Consensus 210 p---~i~~--~~l~~g~~v~~vg~d~ 230 (330)
T PRK08291 210 P---ILKA--EWLHPGLHVTAMGSDA 230 (330)
T ss_pred c---EecH--HHcCCCceEEeeCCCC
Confidence 3 3322 1256787777765543
No 183
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.76 E-value=0.00018 Score=73.30 Aligned_cols=97 Identities=16% Similarity=0.268 Sum_probs=74.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+++|||+|.++...++.+..- --+|.+|||++++.+.|.+.....+ ..+.++++.++++.. +|+|+.++++..
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~-~~v~~~~~~~~av~~---ADIV~taT~s~~ 204 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALG-FAVNTTLDAAEVAHA---ANLIVTTTPSRE 204 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcC-CcEEEECCHHHHhcC---CCEEEEecCCCC
Confidence 4799999999999998887753 3479999999999998876543221 357778999999987 999999998875
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCch
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (505)
+ +++. ..+++|..|+-.++..|.
T Consensus 205 P---~~~~--~~l~~G~hi~~iGs~~p~ 227 (315)
T PRK06823 205 P---LLQA--EDIQPGTHITAVGADSPG 227 (315)
T ss_pred c---eeCH--HHcCCCcEEEecCCCCcc
Confidence 3 3321 246799999988876663
No 184
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=97.74 E-value=0.0002 Score=76.03 Aligned_cols=74 Identities=16% Similarity=0.215 Sum_probs=54.6
Q ss_pred CcEEEEcccHHHHHHHH--HH----HhCCCcEEEEeCChHHHHHHHHhhcc----cC-CCCeeeeCCHHHHHhhcCCCcE
Q 010637 7 SRIGLAGLAVMGQNLAL--NV----AEKGFPISVYNRTTSKVDETLDRAHR----EG-QLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~--~L----a~~G~~V~v~dr~~~~~~~l~~~~~~----~g-~~~i~~~~s~~e~v~~l~~adv 75 (505)
+||+|||.|.||.+++. .+ +.+|++|.+||+++++++........ .+ ..++..++++++.++. +|+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~---AD~ 77 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDG---ADF 77 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcC---CCE
Confidence 47999999999998766 34 45688999999999887665432110 00 0146778888888777 999
Q ss_pred EEEEcCCC
Q 010637 76 VIILVKAG 83 (505)
Q Consensus 76 Iil~vp~~ 83 (505)
||++++.+
T Consensus 78 Vi~ai~~~ 85 (423)
T cd05297 78 VINTIQVG 85 (423)
T ss_pred EEEeeEec
Confidence 99999864
No 185
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.73 E-value=0.00026 Score=70.49 Aligned_cols=119 Identities=15% Similarity=0.161 Sum_probs=73.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCCh--HHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTT--SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~-G~~V~-v~dr~~--~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
|+||||||+|.||+.++..+.+. +.++. +++++. ++....... ++..+++++++ . .++|+|+.|.|
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~-------~~~~~~d~~~l-~--~~~DvVve~t~ 70 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGE-------AVRVVSSVDAL-P--QRPDLVVECAG 70 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhcc-------CCeeeCCHHHh-c--cCCCEEEECCC
Confidence 36999999999999999999876 45554 444432 222221111 25677888887 3 34899999998
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCC---CchhHHHHHHHHHHCCCe-EEeCCCCCCHH
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNE---WYLNTERRIHEASQKGLL-YLGMGVSGGEE 138 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~---~~~~t~~~~~~l~~~gi~-~i~~pvsGg~~ 138 (505)
.. ...+..... |..|.-++..+.. ......++.+..++.|.. |+..+..|+..
T Consensus 71 ~~-~~~e~~~~a---L~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg~d 127 (265)
T PRK13303 71 HA-ALKEHVVPI---LKAGIDCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGGID 127 (265)
T ss_pred HH-HHHHHHHHH---HHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhCHH
Confidence 85 444444433 4456655555554 232344556666666754 45555556543
No 186
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.73 E-value=0.00017 Score=73.98 Aligned_cols=96 Identities=13% Similarity=0.229 Sum_probs=70.8
Q ss_pred CcEEEEcccHHHHHHHHHHH-hCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVA-EKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La-~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+++|||+|.+|...+..|+ ..+. +|.+|+|++++.+++.+......+..+...+++++++.. +|+|+.++|...
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~---aDiVvtaT~s~~ 206 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSG---ADIIVTTTPSET 206 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhcc---CCEEEEecCCCC
Confidence 47999999999999999997 4664 699999999999988765421100135567888888876 999999998864
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+ ++. ...+++|..|...+.-.
T Consensus 207 p---~i~--~~~l~~g~~i~~vg~~~ 227 (326)
T TIGR02992 207 P---ILH--AEWLEPGQHVTAMGSDA 227 (326)
T ss_pred c---Eec--HHHcCCCcEEEeeCCCC
Confidence 3 332 12367888887766543
No 187
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.70 E-value=0.00048 Score=59.14 Aligned_cols=111 Identities=17% Similarity=0.205 Sum_probs=70.2
Q ss_pred EEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEEcCCCchH
Q 010637 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 9 IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~~~v 86 (505)
|-|+|.|.+|..++..|.+.+.+|.+.|+++++++.+.+.+..- +.+..+-.+..+ .+++++.|+++.+++...
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~----i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n 76 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEV----IYGDATDPEVLERAGIEKADAVVILTDDDEEN 76 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEE----EES-TTSHHHHHHTTGGCESEEEEESSSHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhccccc----ccccchhhhHHhhcCccccCEEEEccCCHHHH
Confidence 46899999999999999997779999999999999988776321 222222223333 355799999999886433
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (505)
-.++..+....+...+++-..+. ...+.++..|+..+
T Consensus 77 ~~~~~~~r~~~~~~~ii~~~~~~------~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 77 LLIALLARELNPDIRIIARVNDP------ENAELLRQAGADHV 113 (116)
T ss_dssp HHHHHHHHHHTTTSEEEEEESSH------HHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHCCCCeEEEEECCH------HHHHHHHHCCcCEE
Confidence 33334444434444566554332 23444555666544
No 188
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.70 E-value=9.6e-05 Score=74.10 Aligned_cols=116 Identities=18% Similarity=0.121 Sum_probs=76.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|+|+|.+|++++..|+..| .+|+++||+.++.+++.+.....+ .+....+..+. +..+|+||-++|.+..
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~--~~~~~~~~~~~---~~~~DivInaTp~g~~ 198 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALG--KAELDLELQEE---LADFDLIINATSAGMS 198 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--ceeecccchhc---cccCCEEEECCcCCCC
Confidence 47999999999999999999999 789999999999888876532110 01221122233 3349999999998742
Q ss_pred HHH-HHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE
Q 010637 86 VDQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 86 v~~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (505)
-.. ...-....++++.+++|..- .|..| .+.+..+++|...+
T Consensus 199 ~~~~~~~~~~~~l~~~~~v~DivY-~P~~T-~ll~~A~~~G~~~~ 241 (278)
T PRK00258 199 GELPLPPLPLSLLRPGTIVYDMIY-GPLPT-PFLAWAKAQGARTI 241 (278)
T ss_pred CCCCCCCCCHHHcCCCCEEEEeec-CCCCC-HHHHHHHHCcCeec
Confidence 100 00001134677899999866 34444 45556677776554
No 189
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=97.70 E-value=0.00022 Score=63.91 Aligned_cols=122 Identities=19% Similarity=0.255 Sum_probs=76.5
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+|.|||+|.+|..++.+|+..|+ +++++|.+.-....+..+... ....+-.-+....+.+..+. +++-+.+.+....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~-p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELN-PGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHC-CCcEEEEEeeecC
Confidence 58999999999999999999998 699999875433333221100 00000111222333333322 5666666654321
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
-.. ....+.+-++||+++.. +.....+.+.+.+.++.|++++..|
T Consensus 80 ~~~----~~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 80 EDN----LDDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred hhh----HHHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 111 13445678999999887 4556667788888899999988776
No 190
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.68 E-value=0.00052 Score=79.55 Aligned_cols=121 Identities=13% Similarity=0.091 Sum_probs=85.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-Cc-------------EEEEeCChHHHHHHHHhhcccCCCCeee-eCCHHHHHhhc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG-FP-------------ISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSI 70 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G-~~-------------V~v~dr~~~~~~~l~~~~~~~g~~~i~~-~~s~~e~v~~l 70 (505)
+++|+|||+|.||...+..|++.. ++ |.+.|+++++.+++.+..... ..+.. +.+.+++.+.+
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~--~~v~lDv~D~e~L~~~v 646 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENA--EAVQLDVSDSESLLKYV 646 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCC--ceEEeecCCHHHHHHhh
Confidence 468999999999999999999763 33 899999999988877643110 01344 56778887756
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe-CCC
Q 010637 71 QRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGV 133 (505)
Q Consensus 71 ~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pv 133 (505)
+.+|+||+|+|.... ..++.. .+..|.-+++.+ ....++.++.+..++.|+.++. ++.
T Consensus 647 ~~~DaVIsalP~~~H-~~VAka---AieaGkHvv~ek-y~~~e~~~L~e~Ak~AGV~~m~e~Gl 705 (1042)
T PLN02819 647 SQVDVVISLLPASCH-AVVAKA---CIELKKHLVTAS-YVSEEMSALDSKAKEAGITILCEMGL 705 (1042)
T ss_pred cCCCEEEECCCchhh-HHHHHH---HHHcCCCEEECc-CCHHHHHHHHHHHHHcCCEEEECCcc
Confidence 679999999999643 333332 345677788877 4455667777777888887653 443
No 191
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.68 E-value=0.0011 Score=67.70 Aligned_cols=118 Identities=14% Similarity=0.125 Sum_probs=85.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..++|||+|.++......+..- .-+|.+|+|+++..+++.......+...+..+.|.+++++. +|+|+.++|+..
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~---aDiIvt~T~s~~ 207 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEG---ADIVVTATPSTE 207 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhc---CCEEEEecCCCC
Confidence 4699999999999998888753 34799999999999988865433321136788999999998 999999999975
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
.++. ...+++|..|.-.++-.|...+--.+.+...+.-|+|.+
T Consensus 208 ---Pil~--~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra~~vvvD~~ 250 (330)
T COG2423 208 ---PVLK--AEWLKPGTHINAIGADAPGKRELDPEVLARADRVVVDSL 250 (330)
T ss_pred ---Ceec--HhhcCCCcEEEecCCCCcccccCCHHHHHhcCeEEEcCH
Confidence 3332 234779999888887655444333334444346677754
No 192
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.66 E-value=0.00044 Score=69.45 Aligned_cols=119 Identities=18% Similarity=0.149 Sum_probs=77.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|||+|-+|++++..|++.|. +|+++||++++.+++.+...... .+......+++...+..+|+||-++|.+..
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~--~~~~~~~~~~~~~~~~~~DiVInaTp~g~~ 203 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVG--VITRLEGDSGGLAIEKAAEVLVSTVPADVP 203 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcC--cceeccchhhhhhcccCCCEEEECCCCCCC
Confidence 479999999999999999999997 69999999999998876532110 122223333433333459999999998865
Q ss_pred HHHH-HHHHH-----hcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE
Q 010637 86 VDQT-IAALS-----EHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 86 v~~v-l~~l~-----~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (505)
.+.. +.... ..++++.+++|.--.. ..| .+.+..+++|...+
T Consensus 204 ~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~~ 251 (282)
T TIGR01809 204 ADYVDLFATVPFLLLKRKSSEGIFLDAAYDP-WPT-PLVAIVSAAGWRVI 251 (282)
T ss_pred CCHHHhhhhhhhhccccCCCCcEEEEEeeCC-CCC-HHHHHHHHCCCEEE
Confidence 4321 11111 1234678899986433 333 44555566666544
No 193
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.65 E-value=0.00036 Score=65.93 Aligned_cols=102 Identities=15% Similarity=0.055 Sum_probs=68.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp~ 82 (505)
.+++.|+|. |.+|..++..|++.|++|.+++|+.++.+.+.+......+..+.. ..+.+++.+.++.+|+||.+.|.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~ 107 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAA 107 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCC
Confidence 357999995 999999999999999999999999998887765421100001222 23455444444559999999998
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+.. ..........++.+++|..-..
T Consensus 108 g~~---~~~~~~~~~~~~~vv~D~~~~~ 132 (194)
T cd01078 108 GVE---LLEKLAWAPKPLAVAADVNAVP 132 (194)
T ss_pred Cce---echhhhcccCceeEEEEccCCC
Confidence 753 1111222344578999985544
No 194
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.65 E-value=0.00041 Score=70.97 Aligned_cols=104 Identities=14% Similarity=0.179 Sum_probs=67.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChHHHHHHHH---hhcc-cC-CCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLD---RAHR-EG-QLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G-~~V~v~dr~~~~~~~l~~---~~~~-~g-~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
.+||+|||+|.||..+|..++..| .+|.++|+++++.+...- .... .+ ..+++...+++++ .+ +|+||++
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l-~~---ADiVVit 80 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDI-KD---SDVVVIT 80 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHh-CC---CCEEEEC
Confidence 468999999999999999999999 689999999875432111 0000 00 0134444666644 44 9999999
Q ss_pred c--CCC-------------chHHHHHHHHHhcCCCCcEEEecCCCCchhH
Q 010637 80 V--KAG-------------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (505)
Q Consensus 80 v--p~~-------------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (505)
. |.. ..++++.+.+.++. +..++|..||.....+
T Consensus 81 ag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~-p~a~vivvsNP~di~t 129 (319)
T PTZ00117 81 AGVQRKEEMTREDLLTINGKIMKSVAESVKKYC-PNAFVICVTNPLDCMV 129 (319)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChHHHHH
Confidence 8 321 22445556666654 6667777777543333
No 195
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.64 E-value=0.00029 Score=74.34 Aligned_cols=90 Identities=13% Similarity=0.049 Sum_probs=69.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|+|+|.+|..+|..|...|.+|+++|+++.+.......+ +. ..+++++++. +|+||.++..
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G-------~~-v~~l~eal~~---aDVVI~aTG~---- 277 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDG-------FR-VMTMEEAAEL---GDIFVTATGN---- 277 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcC-------CE-ecCHHHHHhC---CCEEEECCCC----
Confidence 4799999999999999999999999999999998765544332 33 2367777765 9999988744
Q ss_pred HHHHH-HHHhcCCCCcEEEecCCCCc
Q 010637 87 DQTIA-ALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 87 ~~vl~-~l~~~l~~g~iIId~st~~~ 111 (505)
..+++ .....+++|.++++.+....
T Consensus 278 ~~vI~~~~~~~mK~GailiNvG~~d~ 303 (425)
T PRK05476 278 KDVITAEHMEAMKDGAILANIGHFDN 303 (425)
T ss_pred HHHHHHHHHhcCCCCCEEEEcCCCCC
Confidence 33453 56677899999999887653
No 196
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.63 E-value=0.00032 Score=69.45 Aligned_cols=92 Identities=13% Similarity=0.187 Sum_probs=63.2
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhC-CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
++||+|||+ |.||+.++..+.+. +++|. ++|+++++.... .. .++...++++++.+. +|+|+.++|+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~-~~------~~i~~~~dl~~ll~~---~DvVid~t~p 70 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ-GA------LGVAITDDLEAVLAD---ADVLIDFTTP 70 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc-CC------CCccccCCHHHhccC---CCEEEECCCH
Confidence 368999998 99999999988864 67765 589988765443 11 135567888888764 9999988876
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCc
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~ 111 (505)
. ...+++.. .+..|.-++..+|+..
T Consensus 71 ~-~~~~~~~~---al~~G~~vvigttG~s 95 (257)
T PRK00048 71 E-ATLENLEF---ALEHGKPLVIGTTGFT 95 (257)
T ss_pred H-HHHHHHHH---HHHcCCCEEEECCCCC
Confidence 4 34444433 3445665665565543
No 197
>PLN02494 adenosylhomocysteinase
Probab=97.62 E-value=0.00037 Score=73.87 Aligned_cols=96 Identities=13% Similarity=0.047 Sum_probs=70.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|+|+|.+|..+|..+...|.+|.++++++.+.......+ +.. .+.++++.. +|+||.+....
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G-------~~v-v~leEal~~---ADVVI~tTGt~--- 320 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEG-------YQV-LTLEDVVSE---ADIFVTTTGNK--- 320 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcC-------Cee-ccHHHHHhh---CCEEEECCCCc---
Confidence 4799999999999999999999999999999987754444332 232 367777766 99999865442
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCC-CchhHHHH
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNE-WYLNTERR 117 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~-~~~~t~~~ 117 (505)
.++ ......+++|.++++.+.. ..-+...+
T Consensus 321 -~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL 352 (477)
T PLN02494 321 -DIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGL 352 (477)
T ss_pred -cchHHHHHhcCCCCCEEEEcCCCCCccCHHHH
Confidence 333 5566779999999999884 33334333
No 198
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.61 E-value=0.00034 Score=73.09 Aligned_cols=95 Identities=20% Similarity=0.237 Sum_probs=67.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..++.|||+|-||.-.|.+|+++| .+|++.||+.+++.+++++... -+.+++++.+.|..+|+||.++.+..
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~-------~~~~l~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGA-------EAVALEELLEALAEADVVISSTSAPH 250 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCC-------eeecHHHHHHhhhhCCEEEEecCCCc
Confidence 357999999999999999999999 6899999999999999886531 13355555555556999999986654
Q ss_pred hH--HHHHHHHHhcCCCCcEEEecCC
Q 010637 85 PV--DQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 85 ~v--~~vl~~l~~~l~~g~iIId~st 108 (505)
.+ +..++..... .+.-++||.+.
T Consensus 251 ~ii~~~~ve~a~~~-r~~~livDiav 275 (414)
T COG0373 251 PIITREMVERALKI-RKRLLIVDIAV 275 (414)
T ss_pred cccCHHHHHHHHhc-ccCeEEEEecC
Confidence 32 1222222211 12258888865
No 199
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.61 E-value=0.00018 Score=72.35 Aligned_cols=117 Identities=14% Similarity=0.135 Sum_probs=76.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhccc-CCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|.|||+|-+|++++..|+..|. +|+++||+.++.+.+.+..... ....+....+..+.+. .+|+||.++|.+.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~---~aDiVInaTp~Gm 204 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALA---AADGLVHATPTGM 204 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhC---CCCEEEECCcCCC
Confidence 479999999999999999999997 7999999999998887643211 0001222233333333 4999999998773
Q ss_pred hHHH--HHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 85 PVDQ--TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 85 ~v~~--vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
.-.. -++ ...++++.+++|..-... .| .+.+..+++|...++
T Consensus 205 ~~~~~~~~~--~~~l~~~~~v~DivY~P~-~T-~ll~~A~~~G~~~~~ 248 (284)
T PRK12549 205 AKHPGLPLP--AELLRPGLWVADIVYFPL-ET-ELLRAARALGCRTLD 248 (284)
T ss_pred CCCCCCCCC--HHHcCCCcEEEEeeeCCC-CC-HHHHHHHHCCCeEec
Confidence 2110 011 123677889999876543 34 455566677765543
No 200
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.59 E-value=0.00066 Score=69.00 Aligned_cols=98 Identities=11% Similarity=0.112 Sum_probs=64.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChHHHHHHHHhhcc----cCCCCee-eeCCHHHHHhhcCCCcEEEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAHR----EGQLPLT-GHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G--~~V~v~dr~~~~~~~l~~~~~~----~g~~~i~-~~~s~~e~v~~l~~advIil~ 79 (505)
+||+|||+|.+|..+|..|+..| ++|.++|+++++++.+...... .+ .+.. ...+.+++ . .+|+||++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~-~~~~i~~~~~~~l-~---~aDIVIit 75 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLP-SPVKIKAGDYSDC-K---DADIVVIT 75 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccC-CCeEEEcCCHHHh-C---CCCEEEEc
Confidence 37999999999999999999999 6899999999887665543210 00 0112 23444443 3 39999999
Q ss_pred cCCCc---------------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+.... .++++.+.+.++- +..+||..||-.
T Consensus 76 ag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~-~~~~vivvsNP~ 120 (306)
T cd05291 76 AGAPQKPGETRLDLLEKNAKIMKSIVPKIKASG-FDGIFLVASNPV 120 (306)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecChH
Confidence 85521 1344445555544 456777777643
No 201
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.58 E-value=0.00074 Score=74.43 Aligned_cols=116 Identities=18% Similarity=0.296 Sum_probs=77.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~~ 84 (505)
-+|-|+|+|.+|+.+|+.|.++|++|.+.|.|+++++++.+.+.. -+....+.+++.+ .++++|.++++++++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~----~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~ 493 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIR----AVLGNAANEEIMQLAHLDCARWLLLTIPNGY 493 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCe----EEEcCCCCHHHHHhcCccccCEEEEEcCChH
Confidence 468899999999999999999999999999999999998865432 1233333344443 3557999999999875
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
....++..+....+.-.+|.-..+ + +..+.+++.|+.++=.|
T Consensus 494 ~~~~iv~~~~~~~~~~~iiar~~~--~----~~~~~l~~~Gad~vv~p 535 (558)
T PRK10669 494 EAGEIVASAREKRPDIEIIARAHY--D----DEVAYITERGANQVVMG 535 (558)
T ss_pred HHHHHHHHHHHHCCCCeEEEEECC--H----HHHHHHHHcCCCEEECh
Confidence 544454444443333344443321 1 33344556687776544
No 202
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.56 E-value=0.001 Score=69.76 Aligned_cols=122 Identities=19% Similarity=0.206 Sum_probs=78.1
Q ss_pred EEEEcccHHHHHHHHHHHhCC-C-cEEEEeCChHHHHHHHHhhcccCCCCeee----eCCHHHHHhhcCCCcEEEEEcCC
Q 010637 9 IGLAGLAVMGQNLALNVAEKG-F-PISVYNRTTSKVDETLDRAHREGQLPLTG----HYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 9 IgIIGlG~MG~~lA~~La~~G-~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~----~~s~~e~v~~l~~advIil~vp~ 82 (505)
|.|+|.|.+|+.++..|++++ + +|++.||+.++.+++.+..... ++.. ..+.+++.+-++.+|+||.|+|+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGD---RVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTT---TEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhcccc---ceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 789999999999999999987 4 8999999999998887631100 1221 23455555555569999999987
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE-eCCCCCCHH
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEE 138 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i-~~pvsGg~~ 138 (505)
. ....+++.. +..|.-+||.+. .......+.+..++.|+.++ +++...|..
T Consensus 78 ~-~~~~v~~~~---i~~g~~yvD~~~-~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~ 129 (386)
T PF03435_consen 78 F-FGEPVARAC---IEAGVHYVDTSY-VTEEMLALDEEAKEAGVTALPGCGFDPGLS 129 (386)
T ss_dssp G-GHHHHHHHH---HHHT-EEEESS--HHHHHHHCHHHHHHTTSEEE-S-BTTTBHH
T ss_pred c-hhHHHHHHH---HHhCCCeeccch-hHHHHHHHHHHHHhhCCEEEeCcccccchH
Confidence 5 445555443 345788999332 24445555666677787665 467666654
No 203
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.55 E-value=0.00094 Score=68.45 Aligned_cols=113 Identities=15% Similarity=0.210 Sum_probs=78.0
Q ss_pred CCCcEEEEccc-HHHHHHHHHHHhCCC---cEEEEeCChHHHHHHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEE
Q 010637 5 ALSRIGLAGLA-VMGQNLALNVAEKGF---PISVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 5 ~~~~IgIIGlG-~MG~~lA~~La~~G~---~V~v~dr~~~~~~~l~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~ 79 (505)
+++||||||+| .++...+..+.+.+. -|.++|+++++.+++.++.. + ..++|++++++. ...|+|+++
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~------~~~~~~~~~~ll~~-~~iD~V~Ia 74 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFG------IAKAYTDLEELLAD-PDIDAVYIA 74 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcC------CCcccCCHHHHhcC-CCCCEEEEc
Confidence 35699999998 455668888888763 46688999999998887643 3 478899999886 225999999
Q ss_pred cCCCchHHHHHHHHHhcCCCCc-EEEec-CCCCchhHHHHHHHHHHCCCeE
Q 010637 80 VKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~ 128 (505)
+|+....+-++..| ..|+ ++++- =+....+.+++.+..+++|..+
T Consensus 75 tp~~~H~e~~~~AL----~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l 121 (342)
T COG0673 75 TPNALHAELALAAL----EAGKHVLCEKPLALTLEEAEELVELARKAGVKL 121 (342)
T ss_pred CCChhhHHHHHHHH----hcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCce
Confidence 99987766554443 4454 44431 1223456666666666666543
No 204
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.54 E-value=0.0013 Score=73.19 Aligned_cols=117 Identities=15% Similarity=0.175 Sum_probs=80.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~~ 84 (505)
.+|-|+|.|.+|+.+++.|.++|+++++.|.|+++++.+.+.+.. -+....+-.++.+ .++++|.+++++++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~----v~~GDat~~~~L~~agi~~A~~vvv~~~d~~ 476 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMK----VFYGDATRMDLLESAGAAKAEVLINAIDDPQ 476 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCe----EEEEeCCCHHHHHhcCCCcCCEEEEEeCCHH
Confidence 579999999999999999999999999999999999998775432 1333334445553 4668999999998876
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGV 133 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pv 133 (505)
....++..+....+.-.+++-..+ .+....+.+.|+..+....
T Consensus 477 ~n~~i~~~ar~~~p~~~iiaRa~d------~~~~~~L~~~Gad~v~~e~ 519 (621)
T PRK03562 477 TSLQLVELVKEHFPHLQIIARARD------VDHYIRLRQAGVEKPERET 519 (621)
T ss_pred HHHHHHHHHHHhCCCCeEEEEECC------HHHHHHHHHCCCCEEehhh
Confidence 555555444443333345543322 2334556667887765443
No 205
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.54 E-value=0.00085 Score=66.82 Aligned_cols=116 Identities=14% Similarity=0.176 Sum_probs=67.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHh-CCCcEE-EEeCC-hHHHH-HHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAG-LAVMGQNLALNVAE-KGFPIS-VYNRT-TSKVD-ETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~-~G~~V~-v~dr~-~~~~~-~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
+||+|+| +|.||+.++..+.+ .++++. ++||. +++.. .+.+..... ..++..+++++++.. .+|+||.+.|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~-~~gv~~~~d~~~l~~---~~DvVIdfT~ 77 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIG-KVGVPVTDDLEAVET---DPDVLIDFTT 77 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcC-cCCceeeCCHHHhcC---CCCEEEECCC
Confidence 6999999 69999999999986 477765 57854 32211 111110000 013566788888833 3899999997
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCc-hhHHHHHHHHHHCCCeEEe
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWY-LNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~-~~t~~~~~~l~~~gi~~i~ 130 (505)
+. ...+.+.. .+..|.-++..+++.. ....++.+..++.|+.++-
T Consensus 78 p~-~~~~~~~~---al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~ 123 (266)
T TIGR00036 78 PE-GVLNHLKF---ALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVI 123 (266)
T ss_pred hH-HHHHHHHH---HHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEE
Confidence 74 44444433 3445665655555543 3333444444554554443
No 206
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.52 E-value=0.0011 Score=73.60 Aligned_cols=113 Identities=14% Similarity=0.210 Sum_probs=79.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~~ 84 (505)
.+|-|+|.|.+|+.+++.|.++|+++.+.|.|+++++.+.+.+.. -+.+..+-.++.+ .++++|.++++++++.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~----v~~GDat~~~~L~~agi~~A~~vv~~~~d~~ 476 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYK----VYYGDATQLELLRAAGAEKAEAIVITCNEPE 476 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCe----EEEeeCCCHHHHHhcCCccCCEEEEEeCCHH
Confidence 579999999999999999999999999999999999988775432 1333334445544 3567999999999976
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (505)
....++..+....+.-.+++-+.+ ....+.+.+.|+..+
T Consensus 477 ~n~~i~~~~r~~~p~~~IiaRa~~------~~~~~~L~~~Ga~~v 515 (601)
T PRK03659 477 DTMKIVELCQQHFPHLHILARARG------RVEAHELLQAGVTQF 515 (601)
T ss_pred HHHHHHHHHHHHCCCCeEEEEeCC------HHHHHHHHhCCCCEE
Confidence 555555555544433455554333 233455566677655
No 207
>PRK06046 alanine dehydrogenase; Validated
Probab=97.52 E-value=0.00046 Score=70.80 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=71.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-C-CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK-G-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~-G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|||||+|.+|...+..|... + ..|.+|||++++.+++.++....-+..+..+++.+++++ +|+|++|+|+..
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~----aDiVv~aTps~~ 205 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD----CDILVTTTPSRK 205 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh----CCEEEEecCCCC
Confidence 4799999999999999999843 3 368899999999988876532110013556788888874 899999999865
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCch
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (505)
+ +++ ...+++|..|...++..|.
T Consensus 206 P---~~~--~~~l~~g~hV~~iGs~~p~ 228 (326)
T PRK06046 206 P---VVK--AEWIKEGTHINAIGADAPG 228 (326)
T ss_pred c---Eec--HHHcCCCCEEEecCCCCCc
Confidence 3 332 1246789998888876653
No 208
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=97.52 E-value=0.0011 Score=68.21 Aligned_cols=110 Identities=13% Similarity=0.160 Sum_probs=76.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK--GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~--G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
..||||||+ .||...+..+.+. ++++. ++|+++++.+++.++. ++..+++.+++.+. .|++++++|+
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~------gi~~y~~~eell~d---~Di~~V~ipt 72 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRL------GVPLYCEVEELPDD---IDIACVVVRS 72 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHh------CCCccCCHHHHhcC---CCEEEEEeCC
Confidence 358999999 6899999999875 46655 7899999999888764 35578999999876 8888888864
Q ss_pred ----CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE
Q 010637 83 ----GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ----~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (505)
+...+-+ .. .+..|.-|+----....+.+++.+..+++|+.+.
T Consensus 73 ~~P~~~H~e~a-~~---aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 73 AIVGGQGSALA-RA---LLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred CCCCccHHHHH-HH---HHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 2332322 22 3445554443222235677777777778887665
No 209
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.49 E-value=0.00059 Score=71.84 Aligned_cols=88 Identities=15% Similarity=0.084 Sum_probs=68.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|+|+|.+|..++..+...|.+|.++|+++.+.+.....+ +.. .+.++.+.. +|+||.++...
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G-------~~~-~~~~e~v~~---aDVVI~atG~~--- 268 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEG-------YEV-MTMEEAVKE---GDIFVTTTGNK--- 268 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcC-------CEE-ccHHHHHcC---CCEEEECCCCH---
Confidence 4799999999999999999999999999999999877666543 322 245566654 89999987543
Q ss_pred HHHHH-HHHhcCCCCcEEEecCCC
Q 010637 87 DQTIA-ALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 87 ~~vl~-~l~~~l~~g~iIId~st~ 109 (505)
.++. .....+++|.++++.+..
T Consensus 269 -~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 269 -DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred -HHHHHHHHhcCCCCcEEEEeCCC
Confidence 3443 456788999999998854
No 210
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.48 E-value=0.00041 Score=70.73 Aligned_cols=99 Identities=16% Similarity=0.233 Sum_probs=65.5
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CC-CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAE-KG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~-~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+++|||+|..+...+..++. .+ -+|.+|+|++++.++|.+..... +..+..++++++++.. +|+|+.++|+..
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~-~~~v~~~~~~~~av~~---aDii~taT~s~~ 204 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDL-GVPVVAVDSAEEAVRG---ADIIVTATPSTT 204 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCC-CTCEEEESSHHHHHTT---SSEEEE----SS
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccc-cccceeccchhhhccc---CCEEEEccCCCC
Confidence 479999999999999888765 33 47999999999999988765432 2367889999999988 999999999876
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCch
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (505)
.. .+++ ...+++|..|+..++-.|.
T Consensus 205 ~~-P~~~--~~~l~~g~hi~~iGs~~~~ 229 (313)
T PF02423_consen 205 PA-PVFD--AEWLKPGTHINAIGSYTPG 229 (313)
T ss_dssp EE-ESB---GGGS-TT-EEEE-S-SSTT
T ss_pred CC-cccc--HHHcCCCcEEEEecCCCCc
Confidence 10 1222 1357899999988876654
No 211
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.45 E-value=0.00042 Score=60.42 Aligned_cols=95 Identities=18% Similarity=0.279 Sum_probs=60.0
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCC-Cc-EEEEeCChHHHHHHHHhhccc-CCCCeeeeC-CHHHHHhhcCCCcEEEEEcCC
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKG-FP-ISVYNRTTSKVDETLDRAHRE-GQLPLTGHY-TPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G-~~-V~v~dr~~~~~~~l~~~~~~~-g~~~i~~~~-s~~e~v~~l~~advIil~vp~ 82 (505)
||+||| +|.+|..|.+.|+++- ++ +.++.++.+.-..+....... +...+...+ +.+++ .. +|+||+|+|+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~Dvvf~a~~~ 76 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL-SD---VDVVFLALPH 76 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH-TT---ESEEEE-SCH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh-hc---CCEEEecCch
Confidence 699999 8999999999999964 34 456677763322233221100 000123333 44444 44 8999999998
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+ ...+....+ +.+|..|||.|+..
T Consensus 77 ~-~~~~~~~~~---~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 77 G-ASKELAPKL---LKAGIKVIDLSGDF 100 (121)
T ss_dssp H-HHHHHHHHH---HHTTSEEEESSSTT
T ss_pred h-HHHHHHHHH---hhCCcEEEeCCHHH
Confidence 5 456565555 45788999999875
No 212
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.44 E-value=0.00061 Score=67.67 Aligned_cols=105 Identities=18% Similarity=0.202 Sum_probs=68.3
Q ss_pred EEEEcc-cHHHHHHHHHHHhCC----CcEEEEeCChHHHHHHHHhhc---cc-CCCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 9 IGLAGL-AVMGQNLALNVAEKG----FPISVYNRTTSKVDETLDRAH---RE-GQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 9 IgIIGl-G~MG~~lA~~La~~G----~~V~v~dr~~~~~~~l~~~~~---~~-g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|+|||+ |.||..+|..|+..| .+|.+||+++++++....... .. ...+++.++++.+.+++ +|+||++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~---aDiVv~t 77 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKD---ADVVIIT 77 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCC---CCEEEEC
Confidence 689999 999999999999999 799999999876554332210 00 00146666676666665 9999996
Q ss_pred cCCC---------------chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHH
Q 010637 80 VKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERR 117 (505)
Q Consensus 80 vp~~---------------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~ 117 (505)
.-.+ ..++++.+.+.... ++.++|..||-....+...
T Consensus 78 ~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~d~~t~~~ 129 (263)
T cd00650 78 AGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPVDIITYLV 129 (263)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHH
Confidence 5221 12344445565554 6677777776543333333
No 213
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=97.43 E-value=0.0011 Score=59.49 Aligned_cols=98 Identities=17% Similarity=0.209 Sum_probs=60.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhhcc---cCCCCeee-eCCHHHHHhhcCCCcEEEEE
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHR---EGQLPLTG-HYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~~---~g~~~i~~-~~s~~e~v~~l~~advIil~ 79 (505)
|||+|||+ |.+|..+|..|...+. ++.++|+++++++.......+ .-..+... ..+.+++ ++ +|+||++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~-~~---aDivvit 76 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEAL-KD---ADIVVIT 76 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGG-TT---ESEEEET
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccccccc-cc---ccEEEEe
Confidence 58999999 9999999999998875 799999998766544322110 00001222 2344443 33 9999998
Q ss_pred cCC----Cc-----------hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 80 VKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 80 vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.-. +. .++++...+.++- +..+++-.||-
T Consensus 77 ag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNP 120 (141)
T PF00056_consen 77 AGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNP 120 (141)
T ss_dssp TSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSS
T ss_pred ccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCc
Confidence 732 11 1333335555555 56677777664
No 214
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.43 E-value=0.0003 Score=61.00 Aligned_cols=104 Identities=13% Similarity=0.195 Sum_probs=72.9
Q ss_pred cEEEEc----ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 8 RIGLAG----LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 8 ~IgIIG----lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+|+||| -+.+|.-+..+|.++||+|+..|...+.+ . +...+.+++|.-.. .|++++++|..
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i---------~---G~~~y~sl~e~p~~---iDlavv~~~~~ 66 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI---------L---GIKCYPSLAEIPEP---IDLAVVCVPPD 66 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE---------T---TEE-BSSGGGCSST----SEEEE-S-HH
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE---------C---cEEeeccccCCCCC---CCEEEEEcCHH
Confidence 699999 68999999999999999999988665321 1 46778888883244 89999999985
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
.+.++++++... ..+.+++..+ ...+++.+.+++.|+.+++..
T Consensus 67 -~~~~~v~~~~~~-g~~~v~~~~g----~~~~~~~~~a~~~gi~vigp~ 109 (116)
T PF13380_consen 67 -KVPEIVDEAAAL-GVKAVWLQPG----AESEELIEAAREAGIRVIGPN 109 (116)
T ss_dssp -HHHHHHHHHHHH-T-SEEEE-TT----S--HHHHHHHHHTT-EEEESS
T ss_pred -HHHHHHHHHHHc-CCCEEEEEcc----hHHHHHHHHHHHcCCEEEeCC
Confidence 788888888764 4567777766 355677778888999998754
No 215
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.43 E-value=0.00094 Score=68.87 Aligned_cols=99 Identities=13% Similarity=0.124 Sum_probs=72.6
Q ss_pred CcEEEEcccHHHHHHHHHHHh--CCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAE--KGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~--~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+++|||+|..+...++.+.. .-.+|.+|+|++++.++|.+.....+ .++..+++++++++. +|+|+.++++..
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~-~~v~~~~~~~~av~~---ADIIvtaT~S~~ 205 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPG-LRIVACRSVAEAVEG---ADIITTVTADKT 205 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcC-CcEEEeCCHHHHHhc---CCEEEEecCCCC
Confidence 469999999999888776664 23479999999999998886543221 246778999999988 999999997643
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCch
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (505)
. ..+++. ..+++|..|.-.++-.|.
T Consensus 206 ~-~Pvl~~--~~lkpG~hV~aIGs~~p~ 230 (346)
T PRK07589 206 N-ATILTD--DMVEPGMHINAVGGDCPG 230 (346)
T ss_pred C-CceecH--HHcCCCcEEEecCCCCCC
Confidence 1 123321 346889888877766553
No 216
>PRK11579 putative oxidoreductase; Provisional
Probab=97.42 E-value=0.0021 Score=66.42 Aligned_cols=110 Identities=17% Similarity=0.175 Sum_probs=70.9
Q ss_pred CCcEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGLAVMGQN-LALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~-lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+.||||||+|.||.. .+..+... +.+|. ++|+++++.. +... ....+++++++++. ...|+|++++|+
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~---~~~~-----~~~~~~~~~ell~~-~~vD~V~I~tp~ 74 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK---ADWP-----TVTVVSEPQHLFND-PNIDLIVIPTPN 74 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH---hhCC-----CCceeCCHHHHhcC-CCCCEEEEcCCc
Confidence 469999999999984 56666554 67765 7899987643 1111 24567899999864 247999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEE-Eec-CCCCchhHHHHHHHHHHCCCeE
Q 010637 83 GSPVDQTIAALSEHMSPGDCI-IDG-GNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iI-Id~-st~~~~~t~~~~~~l~~~gi~~ 128 (505)
....+.++.. +..|+-| ++- -.....+.+++.+..++.|+.+
T Consensus 75 ~~H~~~~~~a----l~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l 118 (346)
T PRK11579 75 DTHFPLAKAA----LEAGKHVVVDKPFTVTLSQARELDALAKSAGRVL 118 (346)
T ss_pred HHHHHHHHHH----HHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 7655544443 3445544 441 1123345566666666666654
No 217
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.42 E-value=0.0016 Score=63.06 Aligned_cols=144 Identities=17% Similarity=0.204 Sum_probs=94.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChHHHHH-HHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF----PISVYNRTTSKVDE-TLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~----~V~v~dr~~~~~~~-l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
|+||+||.|.|...++..+...|. ++..+-.+...... +... ++..+.+..+.++. +|+++++|+
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~-------g~~~~~~n~~~~~~---s~v~~~svK 70 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEAL-------GVKTVFTNLEVLQA---SDVVFLSVK 70 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcC-------CceeeechHHHHhh---ccceeEeec
Confidence 579999999999999999999985 45555543222222 2322 24455555777776 999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe-CCCCCCHHHhhcCCccccCC---CHHHHHH
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGPSLMPGG---SFEAYNN 157 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsGg~~~a~~G~~im~gg---~~ea~~~ 157 (505)
+. .+..++.++.+.+..++||+.+--+..-.+ +...+. ...+.+- +| -.+.....|.+++.-| ..+..+.
T Consensus 71 p~-~i~~vls~~~~~~~~~~iivS~aaG~tl~~--l~~~l~-~~~rviRvmp--Ntp~~v~eg~sv~~~g~~~~~~D~~l 144 (267)
T KOG3124|consen 71 PQ-VIESVLSEIKPKVSKGKIIVSVAAGKTLSS--LESKLS-PPTRVIRVMP--NTPSVVGEGASVYAIGCHATNEDLEL 144 (267)
T ss_pred ch-hHHHHhhcCccccccceEEEEEeecccHHH--HHHhcC-CCCceEEecC--CChhhhhcCcEEEeeCCCcchhhHHH
Confidence 84 789999888887889999998877654333 333333 1122332 12 1233445555444333 4455678
Q ss_pred HHHHHHHHh
Q 010637 158 IRDILQKVA 166 (505)
Q Consensus 158 v~~ll~~ig 166 (505)
++.+|..+|
T Consensus 145 ~~~ll~~vG 153 (267)
T KOG3124|consen 145 VEELLSAVG 153 (267)
T ss_pred HHHHHHhcC
Confidence 899999988
No 218
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.37 E-value=0.00059 Score=70.52 Aligned_cols=101 Identities=16% Similarity=0.104 Sum_probs=60.8
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhC-CCcEEE-EeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 5 ALSRIGLAGL-AVMGQNLALNVAEK-GFPISV-YNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 5 ~~~~IgIIGl-G~MG~~lA~~La~~-G~~V~v-~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
||+||+|||+ |.+|..+++.|.++ ++++.. .++. +..+.+.+..............+.++. ....+|+|++|+|
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~--~~~~vD~Vf~alP 77 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPE--ILAGADVVFLALP 77 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHH--HhcCCCEEEECCC
Confidence 3579999996 99999999999987 677654 5543 222222221110000000012333332 1234899999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCch
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (505)
++ ...+++..+. ..|..|||.|+.+.-
T Consensus 78 ~~-~~~~~v~~a~---~aG~~VID~S~~fR~ 104 (343)
T PRK00436 78 HG-VSMDLAPQLL---EAGVKVIDLSADFRL 104 (343)
T ss_pred cH-HHHHHHHHHH---hCCCEEEECCcccCC
Confidence 97 4444544443 468999999987744
No 219
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.36 E-value=0.00071 Score=62.59 Aligned_cols=74 Identities=19% Similarity=0.333 Sum_probs=56.2
Q ss_pred CcEEEEcccHH-HHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVM-GQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~M-G~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|||.|.| |..+|.+|.++|.+|++.+|+.+ ++.+.+.. +|+||.+++...
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~---------------------~l~~~l~~---aDiVIsat~~~~- 99 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK---------------------NLKEHTKQ---ADIVIVAVGKPG- 99 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch---------------------hHHHHHhh---CCEEEEcCCCCc-
Confidence 57999999997 88899999999999999998742 22234444 999999998863
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
++.. ..++++.+|||.+...
T Consensus 100 ---ii~~--~~~~~~~viIDla~pr 119 (168)
T cd01080 100 ---LVKG--DMVKPGAVVIDVGINR 119 (168)
T ss_pred ---eecH--HHccCCeEEEEccCCC
Confidence 2311 1356789999998653
No 220
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.36 E-value=0.0019 Score=69.11 Aligned_cols=98 Identities=14% Similarity=0.234 Sum_probs=64.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeee-CCHHHHHhh-cCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH-YTPRDFVLS-IQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~-~s~~e~v~~-l~~advIil~vp~~~ 84 (505)
|+|.|+|+|.+|..++..|.+.|++|.++|+++++++.+.+..... -+... .+...+.+. +..+|.||+++++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~---~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~- 76 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVR---TVVGNGSSPDVLREAGAEDADLLIAVTDSD- 76 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEE---EEEeCCCCHHHHHHcCCCcCCEEEEecCCh-
Confidence 4799999999999999999999999999999999988876522110 01111 233333222 45699999999885
Q ss_pred hHHHHHHHHHhcC-CCCcEEEecCC
Q 010637 85 PVDQTIAALSEHM-SPGDCIIDGGN 108 (505)
Q Consensus 85 ~v~~vl~~l~~~l-~~g~iIId~st 108 (505)
.....+......+ ....+|+...+
T Consensus 77 ~~n~~~~~~~r~~~~~~~ii~~~~~ 101 (453)
T PRK09496 77 ETNMVACQIAKSLFGAPTTIARVRN 101 (453)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECC
Confidence 3444443333333 44456665543
No 221
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.34 E-value=0.00041 Score=73.33 Aligned_cols=73 Identities=16% Similarity=0.109 Sum_probs=55.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|||+|.||..++.+|+..|. +++++||+.++.+.+.+..... .+...+++.+. +..+|+||.|++.+..
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~---~~~~~~~l~~~---l~~aDiVI~aT~a~~~ 255 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNA---SAHYLSELPQL---IKKADIIIAAVNVLEY 255 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCC---eEecHHHHHHH---hccCCEEEECcCCCCe
Confidence 579999999999999999999995 7999999999998888753210 12223333344 4449999999988644
No 222
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.34 E-value=0.0032 Score=63.66 Aligned_cols=123 Identities=13% Similarity=0.154 Sum_probs=88.2
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHh---CCCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEE
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAE---KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~---~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advI 76 (505)
|.+++.-|+||+|+|.|+.-++++|.- .+|.|. +++|+.+++.+|++.+.-. +.+...|.++++++ ...|+|
T Consensus 1 ~~~s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~---~~k~y~syEeLakd-~~vDvV 76 (351)
T KOG2741|consen 1 VSDSATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIP---NPKAYGSYEELAKD-PEVDVV 76 (351)
T ss_pred CCCCceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCC---CCccccCHHHHhcC-CCcCEE
Confidence 566666799999999999999998864 357654 7899999999998875321 35778999999987 234999
Q ss_pred EEEcCCCchHHHHHHHHHhcCCCCc-EEEec-CCCCchhHHHHHHHHHHCCCeEEeC
Q 010637 77 IILVKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i~~ 131 (505)
.+..|.....+-+... +. .|+ ++++- -.......+++.+.++.+|+.|++.
T Consensus 77 yi~~~~~qH~evv~l~-l~---~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg 129 (351)
T KOG2741|consen 77 YISTPNPQHYEVVMLA-LN---KGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEG 129 (351)
T ss_pred EeCCCCccHHHHHHHH-HH---cCCcEEecccccCCHHHHHHHHHHHHHcCcEEEee
Confidence 9999998654433322 22 222 55552 1223456777888888899888764
No 223
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.33 E-value=0.0086 Score=57.75 Aligned_cols=176 Identities=11% Similarity=0.147 Sum_probs=102.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCCh----------HHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTT----------SKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQR 72 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~-V~v~dr~~----------~~~~~l~~~~~~~g~~~i~~--~~s~~e~v~~l~~ 72 (505)
-++|+|.|+|++|..+|..|.+.|.. |.+.|.+. +.++...+.+... .... ..+.+++.. + .
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~---~~~~~~~~~~~~l~~-~-~ 97 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSA---RVKVQDYFPGEAILG-L-D 97 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCcc---ccCcccccCccccee-c-c
Confidence 36899999999999999999999884 56789887 6655544433211 1100 112233432 2 5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCH
Q 010637 73 PRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSF 152 (505)
Q Consensus 73 advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ 152 (505)
+|+++-|.+.+......... + +=++|+...|.... .+..+.|.++|+.|+.--+.. .|..+.
T Consensus 98 ~DVlipaA~~~~i~~~~a~~----l-~a~~V~e~AN~p~t--~~a~~~L~~~Gi~v~Pd~~~N------aGGvi~----- 159 (217)
T cd05211 98 VDIFAPCALGNVIDLENAKK----L-KAKVVAEGANNPTT--DEALRILHERGIVVAPDIVAN------AGGVIV----- 159 (217)
T ss_pred ccEEeeccccCccChhhHhh----c-CccEEEeCCCCCCC--HHHHHHHHHCCcEEEChHHhc------CCCeEe-----
Confidence 89999998876332333233 3 24688888886543 367788899998776422111 111110
Q ss_pred HHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHH
Q 010637 153 EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIF 224 (505)
Q Consensus 153 ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~ 224 (505)
..++.+ +.. ...+|- -.-+.+.+...+.....+.+..+++.+ +++.+...++
T Consensus 160 s~~E~~----q~~-------~~~~w~--------~~~v~~~l~~~m~~~~~~v~~~a~~~~-~~~r~aA~~~ 211 (217)
T cd05211 160 SYFEWV----QNL-------QRLSWD--------AEEVRSKLEQVMTDIHNGVFAISERDG-VTMRAAANIL 211 (217)
T ss_pred EHHHhc----CCc-------cccCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHC-cCHHHHHHHH
Confidence 111111 111 112221 122344455556677788888888888 8877766554
No 224
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.31 E-value=0.0029 Score=64.61 Aligned_cols=99 Identities=13% Similarity=0.136 Sum_probs=61.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhhccc-CC-CCeee-eCCHHHHHhhcCCCcEEEEEc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHRE-GQ-LPLTG-HYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~~~-g~-~~i~~-~~s~~e~v~~l~~advIil~v 80 (505)
.+||+|||+|.+|..+|..|+..|. ++.++|++.++++.......+. .. .+... ..+.+++ ++ +|+||++.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~-~~---adivIita 81 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDC-KD---ADLVVITA 81 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHh-CC---CCEEEEec
Confidence 3589999999999999999999987 7999999988764443221110 00 02222 3444443 33 99999976
Q ss_pred CC----Cc-----------hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 81 KA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 81 p~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
-. +. .++++++.+..+- +..++|..||-
T Consensus 82 g~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~-~~~~vivvsNP 124 (315)
T PRK00066 82 GAPQKPGETRLDLVEKNLKIFKSIVGEVMASG-FDGIFLVASNP 124 (315)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCc
Confidence 32 11 1333344454443 45667777753
No 225
>PRK04148 hypothetical protein; Provisional
Probab=97.31 E-value=0.0018 Score=57.39 Aligned_cols=95 Identities=13% Similarity=0.080 Sum_probs=72.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeee---eCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG---HYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~---~~s~~e~v~~l~~advIil~vp~~ 83 (505)
++|.+||+| -|..+|..|++.|++|.+.|.++..++...+.+.. +.. ++..-++-++ +|+|...=|+.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~-----~v~dDlf~p~~~~y~~---a~liysirpp~ 88 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLN-----AFVDDLFNPNLEIYKN---AKLIYSIRPPR 88 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCe-----EEECcCCCCCHHHHhc---CCEEEEeCCCH
Confidence 579999999 99999999999999999999999998887765421 222 2223345555 89999888885
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCc
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~ 111 (505)
.+..-+-+|...+...-+|...|+..|
T Consensus 89 -el~~~~~~la~~~~~~~~i~~l~~e~~ 115 (134)
T PRK04148 89 -DLQPFILELAKKINVPLIIKPLSGEEP 115 (134)
T ss_pred -HHHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 566666778777777777777777654
No 226
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.001 Score=63.35 Aligned_cols=190 Identities=12% Similarity=0.115 Sum_probs=109.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+.+|+||.|..|.....+-...++... +-.|++++.+.+.+.. ...+.++....+..+++|.-||+.
T Consensus 10 ~v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~----------~a~p~d~~~~ael~~~vfv~vpd~- 78 (289)
T COG5495 10 RVVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETY----------VAPPLDVAKSAELLLLVFVDVPDA- 78 (289)
T ss_pred eeEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhcc----------CCCccchhhChhhhceEEecchHH-
Confidence 3579999999999996666555566555 4478888877765432 223334444322267788777774
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE---e-CCCCCCHHHhh--cCCc-cccCCCHHHHHH
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL---G-MGVSGGEEGAR--HGPS-LMPGGSFEAYNN 157 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i---~-~pvsGg~~~a~--~G~~-im~gg~~ea~~~ 157 (505)
.+-.+...- .-.+|+++++||...-. .+.+.+...|..-. . +-.+|.++... .++. .+..+|+--+..
T Consensus 79 ~~s~vaa~~--~~rpg~iv~HcSga~~~---~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai 153 (289)
T COG5495 79 LYSGVAATS--LNRPGTIVAHCSGANGS---GILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAI 153 (289)
T ss_pred HHHHHHHhc--ccCCCeEEEEccCCCch---hhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccHH
Confidence 333333222 24589999999886533 34444444443211 1 23566666554 2332 233577777888
Q ss_pred HHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHH
Q 010637 158 IRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (505)
Q Consensus 158 v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~ 219 (505)
++.+...||.+ .+-+-+.-...| -...|--..-...++.|+..+.+..| .|.-+
T Consensus 154 ~q~la~emgg~------~f~V~~~~r~lY-Haaa~~asnf~v~~l~~a~~i~~aag-~Dq~e 207 (289)
T COG5495 154 VQSLALEMGGE------PFCVREEARILY-HAAAVHASNFIVTVLADALEIYRAAG-DDQPE 207 (289)
T ss_pred HHHHHHHhCCC------ceeechhHHHHH-HHHHHHhhccHHHHHHHHHHHHHHhc-CCCcc
Confidence 99999999954 222222110000 01111111224667789999999888 87444
No 227
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.26 E-value=0.0013 Score=60.74 Aligned_cols=72 Identities=15% Similarity=0.230 Sum_probs=53.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
|||+|||+ |..|+.|+.-..++||+|+.+-||++++..+......+ .. .-+++.+.+.|..-|+||.+.-..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q----~D-ifd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQ----KD-IFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeec----cc-ccChhhhHhhhcCCceEEEeccCC
Confidence 68999997 99999999999999999999999999976642211100 01 225555556666689999998554
No 228
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.23 E-value=0.0032 Score=64.15 Aligned_cols=100 Identities=15% Similarity=0.209 Sum_probs=64.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhhcc----cCCCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHR----EGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~~----~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
.+||+|||+|.+|..+|..|+..|. ++.++|+++++++.......+ ....++..+.+++++ .+ +|+||++
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~-~~---adivvit 78 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVT-AN---SKVVIVT 78 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHh-CC---CCEEEEC
Confidence 3589999999999999999998875 799999988765433221110 000034545677764 33 9999997
Q ss_pred cCC----Cch-----------HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 80 VKA----GSP-----------VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~----~~~-----------v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
.-. +.. ++++.+.+..+ .+..++|..||-.
T Consensus 79 aG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~ 123 (312)
T cd05293 79 AGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNPV 123 (312)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccChH
Confidence 632 211 33334555555 4667777777643
No 229
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.23 E-value=0.0021 Score=66.33 Aligned_cols=131 Identities=13% Similarity=0.166 Sum_probs=74.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC----------CCcEE-EEeCC----------hHHHHHHHHhhcccCCC-CeeeeCCH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK----------GFPIS-VYNRT----------TSKVDETLDRAHREGQL-PLTGHYTP 63 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~----------G~~V~-v~dr~----------~~~~~~l~~~~~~~g~~-~i~~~~s~ 63 (505)
..+|+|+|+|.||+.++..|.++ +.+|. ++|++ .++...+.+.......+ ......++
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISG 81 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCH
Confidence 45899999999999999999865 34544 66753 33333333321100000 01123478
Q ss_pred HHHHhhcCCCcEEEEEcCCCchH-HHHHHHHHhcCCCCcEEEecCCCCch-hHHHHHHHHHHCCCeEE-eCCCCCCH
Q 010637 64 RDFVLSIQRPRSVIILVKAGSPV-DQTIAALSEHMSPGDCIIDGGNEWYL-NTERRIHEASQKGLLYL-GMGVSGGE 137 (505)
Q Consensus 64 ~e~v~~l~~advIil~vp~~~~v-~~vl~~l~~~l~~g~iIId~st~~~~-~t~~~~~~l~~~gi~~i-~~pvsGg~ 137 (505)
+++++. ..+|+|+.++|+.... +...+-+...+..|.-||-.+..... ...++.+..++.|..|. .+.+.+|-
T Consensus 82 ~ell~~-~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~gl 157 (341)
T PRK06270 82 LEVIRS-VDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVGGAM 157 (341)
T ss_pred HHHhhc-cCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeeech
Confidence 888754 2389999999974331 11223334456678877754432211 23345555566677664 45555544
No 230
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.20 E-value=0.0032 Score=63.79 Aligned_cols=96 Identities=17% Similarity=0.141 Sum_probs=62.3
Q ss_pred EEEEcccHHHHHHHHHHHhCC--CcEEEEeCChHHHHHHHHhhccc----CCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 9 IGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAHRE----GQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 9 IgIIGlG~MG~~lA~~La~~G--~~V~v~dr~~~~~~~l~~~~~~~----g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+|||+|.+|..+|..|+..| .++.++|+++++++......... ...++....+.+++ + .+|+||++...
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l-~---~aDiVIitag~ 76 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADA-A---DADIVVITAGA 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHh-C---CCCEEEEcCCC
Confidence 689999999999999999998 68999999998766554321110 00023333444433 3 39999999854
Q ss_pred Cc---------------hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 83 GS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 83 ~~---------------~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.. .++++.+.+..+- ++.+||..||-
T Consensus 77 p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP 117 (300)
T cd00300 77 PRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNP 117 (300)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCh
Confidence 21 1334445555554 66677777764
No 231
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.18 E-value=0.0018 Score=67.68 Aligned_cols=97 Identities=16% Similarity=0.192 Sum_probs=69.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--C-CcEEEEeCChHHHHHHHHhhccc-CCC-CeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK--G-FPISVYNRTTSKVDETLDRAHRE-GQL-PLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~--G-~~V~v~dr~~~~~~~l~~~~~~~-g~~-~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.+++|||+|.++......++.- . -+|.+|+|++++.++|.++.... ++. .+.++++++++++. +|+|+.+++
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~---ADIVvtaT~ 232 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRG---SDIVTYCNS 232 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcC---CCEEEEccC
Confidence 4799999999999999988762 2 37999999999999887654321 001 27778999999988 999999997
Q ss_pred CCch---HHHHHHHHHhcCCCCcEEEecCC
Q 010637 82 AGSP---VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 82 ~~~~---v~~vl~~l~~~l~~g~iIId~st 108 (505)
.... ...+++ ...+++|..|+-.+.
T Consensus 233 s~~~~~s~~Pv~~--~~~lkpG~hv~~ig~ 260 (379)
T PRK06199 233 GETGDPSTYPYVK--REWVKPGAFLLMPAA 260 (379)
T ss_pred CCCCCCCcCcEec--HHHcCCCcEEecCCc
Confidence 6431 112332 124678887764433
No 232
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.16 E-value=0.0026 Score=64.72 Aligned_cols=103 Identities=20% Similarity=0.208 Sum_probs=61.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCc--EEEEeCCh--HHHHHHH----HhhcccC-CCCeeeeCCHHHHHhhcCCCcEE
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFP--ISVYNRTT--SKVDETL----DRAHREG-QLPLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~--V~v~dr~~--~~~~~l~----~~~~~~g-~~~i~~~~s~~e~v~~l~~advI 76 (505)
|||+|||+ |.+|..++..|+..|+. |.++||++ ++++... +.....+ ..++....+.++ +.. +|+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~-l~~---aDiV 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSD-VAG---SDIV 76 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHH-hCC---CCEE
Confidence 58999997 99999999999999874 99999965 4332211 1100000 002334445544 333 9999
Q ss_pred EEEcCC----Cc-----------hHHHHHHHHHhcCCCCcEEEecCCCCchhH
Q 010637 77 IILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (505)
Q Consensus 77 il~vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (505)
|+++.. +. .++++...+.+..+ +.+||-.+|..+..+
T Consensus 77 iitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~~t 128 (309)
T cd05294 77 IITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDVMT 128 (309)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHHH
Confidence 999852 11 13344455666554 455665666544444
No 233
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.14 E-value=0.0036 Score=60.85 Aligned_cols=115 Identities=12% Similarity=0.091 Sum_probs=77.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEE-EEeC----------ChHHHHHHHHhhcccCCC-CeeeeCCHHHHHhhcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPIS-VYNR----------TTSKVDETLDRAHREGQL-PLTGHYTPRDFVLSIQRP 73 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~-v~dr----------~~~~~~~l~~~~~~~g~~-~i~~~~s~~e~v~~l~~a 73 (505)
.++|+|.|+|.+|+.+|+.|.+.|.+|+ +.|. +.+.+.+..+....-..+ .... -+.+++... ++
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~-~~~~~i~~~--~~ 107 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAER-ITNEELLEL--DC 107 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCcee-cCCccceee--cc
Confidence 4689999999999999999999999988 6677 666665554432110000 0111 133344332 48
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 74 RSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 74 dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
|+++-|.+.+....+.+..+ +=++|+...|... +.+..+.|.++|+.|+.
T Consensus 108 Dvlip~a~~~~i~~~~~~~l-----~a~~I~egAN~~~--t~~a~~~L~~rGi~~~P 157 (227)
T cd01076 108 DILIPAALENQITADNADRI-----KAKIIVEAANGPT--TPEADEILHERGVLVVP 157 (227)
T ss_pred cEEEecCccCccCHHHHhhc-----eeeEEEeCCCCCC--CHHHHHHHHHCCCEEEC
Confidence 99999988765444444444 2468888888765 36777889999998875
No 234
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.13 E-value=0.00087 Score=61.97 Aligned_cols=98 Identities=16% Similarity=0.152 Sum_probs=64.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeee--------------------eCCHHHH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--------------------HYTPRDF 66 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--------------------~~s~~e~ 66 (505)
.+|.|+|.|+.|.+-+..+...|++|.++|.++++.+++...... .+.. ......+
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 96 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAY----FIEVDYEDHLERKDFDKADYYEHPESYESNF 96 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTE----ESEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCc----eEEEcccccccccccchhhhhHHHHHhHHHH
Confidence 579999999999999999999999999999999988776654432 1222 1111123
Q ss_pred HhhcCCCcEEEEEcC-CCchHHHHH-HHHHhcCCCCcEEEecCC
Q 010637 67 VLSIQRPRSVIILVK-AGSPVDQTI-AALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 67 v~~l~~advIil~vp-~~~~v~~vl-~~l~~~l~~g~iIId~st 108 (505)
.+.++.+|+||.++- .+.....++ ++.+..++++.+|+|.|-
T Consensus 97 ~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 97 AEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTG
T ss_pred HHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEe
Confidence 333334899997442 222333334 666677889999999865
No 235
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.12 E-value=0.002 Score=64.18 Aligned_cols=97 Identities=19% Similarity=0.238 Sum_probs=74.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEEc--CCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILV--KAG 83 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~v--p~~ 83 (505)
.+|.|||-|.+|.+-|+-..--|-+|++.|+|.+++..+-..... ++ ...+++..+.+.++++|+||-+| |..
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~----rv~~~~st~~~iee~v~~aDlvIgaVLIpga 244 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG----RVHTLYSTPSNIEEAVKKADLVIGAVLIPGA 244 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc----eeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence 479999999999999999999999999999999998887665322 33 34566666666677799999876 333
Q ss_pred chHHHHHHHHHhcCCCCcEEEecC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~s 107 (505)
++=+-+.+++...++||.+|||..
T Consensus 245 kaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCceehhHHHHHhcCCCcEEEEEE
Confidence 332334477788899999998853
No 236
>PRK15076 alpha-galactosidase; Provisional
Probab=97.11 E-value=0.0023 Score=68.05 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=51.2
Q ss_pred CcEEEEcccHHHHHHHH--HHH----hCCCcEEEEeCChHHHHHHHH---hhcc-cC-CCCeeeeCCHHHHHhhcCCCcE
Q 010637 7 SRIGLAGLAVMGQNLAL--NVA----EKGFPISVYNRTTSKVDETLD---RAHR-EG-QLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~--~La----~~G~~V~v~dr~~~~~~~l~~---~~~~-~g-~~~i~~~~s~~e~v~~l~~adv 75 (505)
+||+|||.|.||...+. .++ -.|.+|.++|+++++++.... .... .+ ..+++.+++..+.++. +|+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~d---ADf 78 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQG---ADY 78 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCC---CCE
Confidence 68999999999976665 554 235789999999988663221 1100 00 0146777887777776 999
Q ss_pred EEEEcCCC
Q 010637 76 VIILVKAG 83 (505)
Q Consensus 76 Iil~vp~~ 83 (505)
||+++-.+
T Consensus 79 Vv~ti~vg 86 (431)
T PRK15076 79 VINAIQVG 86 (431)
T ss_pred EeEeeeeC
Confidence 99998665
No 237
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=97.10 E-value=0.0026 Score=63.82 Aligned_cols=105 Identities=12% Similarity=0.176 Sum_probs=83.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
+++||+|+|.+|+.+|.++..-|..|..||.-... ++..+. +++ ..+++|+... +|+|=+-+|-....
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~-~~~~a~-------gvq-~vsl~Eil~~---ADFitlH~PLtP~T 214 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPM-ALAEAF-------GVQ-LVSLEEILPK---ADFITLHVPLTPST 214 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCch-HHHHhc-------cce-eeeHHHHHhh---cCEEEEccCCCcch
Confidence 46999999999999999999999999998754321 122222 244 3578888876 99999999988888
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHH
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ 123 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~ 123 (505)
+.++ ++....+++|.-||+++.+-.-++..+.+.+..
T Consensus 215 ~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 215 EKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred hhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhc
Confidence 8888 566677899999999999998899888887764
No 238
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.09 E-value=0.0047 Score=62.26 Aligned_cols=95 Identities=13% Similarity=0.080 Sum_probs=65.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChHHHH-HHHHhhcccCCCCeee-eCCHHHHHhh--cCCCcEEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVD-ETLDRAHREGQLPLTG-HYTPRDFVLS--IQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~-G~~V~-v~dr~~~~~~-~l~~~~~~~g~~~i~~-~~s~~e~v~~--l~~advIil~ 79 (505)
+.||||||+|.+|..+...+.+. +.++. ++|+++++.. ...++. ++.. +++.+++++. ++..|+|+.+
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~------Gi~~~~~~ie~LL~~~~~~dIDiVf~A 77 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRL------GVATSAEGIDGLLAMPEFDDIDIVFDA 77 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHc------CCCcccCCHHHHHhCcCCCCCCEEEEC
Confidence 46899999999999988888764 55655 7799886432 222221 2333 4688888863 3458999999
Q ss_pred cCCCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+|... ..+....+ +..|..+||.+...
T Consensus 78 T~a~~-H~e~a~~a---~eaGk~VID~sPA~ 104 (302)
T PRK08300 78 TSAGA-HVRHAAKL---REAGIRAIDLTPAA 104 (302)
T ss_pred CCHHH-HHHHHHHH---HHcCCeEEECCccc
Confidence 98853 33333333 45789999987764
No 239
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.09 E-value=0.004 Score=59.34 Aligned_cols=33 Identities=24% Similarity=0.507 Sum_probs=30.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRT 38 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~ 38 (505)
..+|+|+|+|.||..+|.+|++.|+ +|+++|.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3579999999999999999999999 69999999
No 240
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.08 E-value=0.002 Score=66.62 Aligned_cols=98 Identities=13% Similarity=0.173 Sum_probs=61.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC-CCcEE-EEeCChHHHHHHHHhhcc-cCCCCeee-eCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHR-EGQLPLTG-HYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~-~g~~~i~~-~~s~~e~v~~l~~advIil~vp 81 (505)
+||+|||+ |.+|..+++.|.++ ++++. +++++...-+.+.+.... .+...... ..+.+++.+. +|++|+|+|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~DvVf~alP 77 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAED---ADVVFLALP 77 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcC---CCEEEECCC
Confidence 48999998 99999999999987 66777 556554322222221110 00000111 1245555544 999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCc
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~ 111 (505)
++ ...+++..+. ..|..|||.|+.+-
T Consensus 78 ~~-~s~~~~~~~~---~~G~~VIDlS~~fR 103 (346)
T TIGR01850 78 HG-VSAELAPELL---AAGVKVIDLSADFR 103 (346)
T ss_pred ch-HHHHHHHHHH---hCCCEEEeCChhhh
Confidence 97 4455555543 46899999998753
No 241
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.06 E-value=0.0048 Score=63.72 Aligned_cols=97 Identities=15% Similarity=0.129 Sum_probs=60.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChHHHHHHHHhhccc------------CCCCeeeeCCHHHHHhhcC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHRE------------GQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~~------------g~~~i~~~~s~~e~v~~l~ 71 (505)
|+||||+|+|.||+.++..+.++ +++|. ++|++++....+.+..... ++.++.+..+++++...
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~-- 78 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEK-- 78 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhcc--
Confidence 36899999999999999998864 56766 5577765555444421000 00024555667766654
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 72 RPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 72 ~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+|+||.|+|... ..+... .++..|..+|+.+..
T Consensus 79 -vDVVIdaT~~~~-~~e~a~---~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 79 -ADIVVDATPGGV-GAKNKE---LYEKAGVKAIFQGGE 111 (341)
T ss_pred -CCEEEECCCchh-hHHHHH---HHHHCCCEEEEcCCC
Confidence 888888887753 333333 234456777776664
No 242
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=97.05 E-value=0.015 Score=50.59 Aligned_cols=101 Identities=17% Similarity=0.229 Sum_probs=73.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHH--HHhcCCCCCCCcccH
Q 010637 327 KKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKK--AYQRNPNLASLVVDP 404 (505)
Q Consensus 327 ~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~--~~~~~~~~~~ll~~~ 404 (505)
.++-.|.++|-+.++.+..++|++.+-++. ++|.+++.++-+.| --.|+.++.... ++..+.+ +
T Consensus 2 ~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~------Gld~~~~~~vl~~~-~~~s~~~~~~~~~~~~~~~~~-------~ 67 (122)
T PF14833_consen 2 AGQAMKLANNLLIAANMAALAEALALAEKA------GLDPEQLLDVLSAG-SGGSWMLKNRAPRMILNGDFD-------P 67 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TS-HHHHHHHHHTS-TTHBHHHHHHHHHHHHTTTTC-------S
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHccC-CcCchHHHhhhhhhhhcccCC-------c
Confidence 356789999999999999999999998854 39999999999877 457888776543 3333221 1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 010637 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDT 443 (505)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~ 443 (505)
.| .++-...+++-++..|-+.|+|+|..+.+..+|..
T Consensus 68 ~f--~l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~ 104 (122)
T PF14833_consen 68 GF--SLDLARKDLRLALDLAKEAGVPLPLGSAARQLYQA 104 (122)
T ss_dssp SS--BHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred cc--hhHhhccHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 22 12344567788999999999999999999987763
No 243
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.04 E-value=0.0086 Score=64.03 Aligned_cols=115 Identities=13% Similarity=0.169 Sum_probs=74.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCe-eee-CCHHHHH-hhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL-TGH-YTPRDFV-LSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i-~~~-~s~~e~v-~~l~~advIil~vp~ 82 (505)
+++|-|+|+|.+|..++..|.+.|++|.++|+++++.+.+.+.+... .+ ... .+.+.+. ..++++|.|+++.++
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~---~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~ 307 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNT---LVLHGDGTDQELLEEEGIDEADAFIALTND 307 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCC---eEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence 46799999999999999999999999999999999988887653210 11 111 2333332 235569999988887
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
+ ...-.+..+...+....+|+-+.+.. ....+...|+.++-
T Consensus 308 ~-~~n~~~~~~~~~~~~~~ii~~~~~~~------~~~~~~~~g~~~vi 348 (453)
T PRK09496 308 D-EANILSSLLAKRLGAKKVIALVNRPA------YVDLVEGLGIDIAI 348 (453)
T ss_pred c-HHHHHHHHHHHHhCCCeEEEEECCcc------hHHHHHhcCCCEEE
Confidence 5 33333333444455556666554432 12334556776553
No 244
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=97.00 E-value=0.0034 Score=65.86 Aligned_cols=104 Identities=13% Similarity=0.133 Sum_probs=71.3
Q ss_pred CcEEEEcccHHHHHH-HHHHHhCCCcEEEEeCChHHHHHHHHhhcc----cC-C-C-----Ceeee--CCHHHHHhhcCC
Q 010637 7 SRIGLAGLAVMGQNL-ALNVAEKGFPISVYNRTTSKVDETLDRAHR----EG-Q-L-----PLTGH--YTPRDFVLSIQR 72 (505)
Q Consensus 7 ~~IgIIGlG~MG~~l-A~~La~~G~~V~v~dr~~~~~~~l~~~~~~----~g-~-~-----~i~~~--~s~~e~v~~l~~ 72 (505)
|||.++|+|.||++. +..|.+.|++|++.|++++.++.+.+++.- .+ . . ++... .+.+++.+.+..
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~ 80 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE 80 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence 589999999999855 888899999999999999999998877531 01 0 0 11112 133555555556
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcC--------CCCcEEEecCCCCc
Q 010637 73 PRSVIILVKAGSPVDQTIAALSEHM--------SPGDCIIDGGNEWY 111 (505)
Q Consensus 73 advIil~vp~~~~v~~vl~~l~~~l--------~~g~iIId~st~~~ 111 (505)
+|+|.++|... ..+.+...|.+.| .++-.|+.|-|...
T Consensus 81 ~dlvt~~v~~~-~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~~ 126 (381)
T PRK02318 81 ADLVTTAVGPN-ILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMIR 126 (381)
T ss_pred CCEEEeCCCcc-cchhHHHHHHHHHHHHHHcCCCCCCEEEecCChhh
Confidence 89999999765 4556665555544 23337888888754
No 245
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.98 E-value=0.0048 Score=57.09 Aligned_cols=68 Identities=18% Similarity=0.311 Sum_probs=52.9
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 9 IGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 9 IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp~~ 83 (505)
|.|+|. |.+|..++..|.+.|++|++..|++++.+. ..+. .+.. ..+++.+.+.++.+|.||.+++..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~-----~~~~~d~~d~~~~~~al~~~d~vi~~~~~~ 71 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGV-----EIIQGDLFDPDSVKAALKGADAVIHAAGPP 71 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTE-----EEEESCTTCHHHHHHHHTTSSEEEECCHST
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--cccc-----ccceeeehhhhhhhhhhhhcchhhhhhhhh
Confidence 679995 999999999999999999999999998776 2211 1111 245666667777799999999754
No 246
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=96.95 E-value=0.0041 Score=50.72 Aligned_cols=63 Identities=21% Similarity=0.352 Sum_probs=47.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..+++|+|.|.+|..++..|.+. +.+|.+||| |++|.+++.+.
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------------------di~i~~~~~~~ 66 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------------------DILVTATPAGV 66 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC------------------------------------CEEEEcCCCCC
Confidence 35799999999999999999998 567888876 57777776654
Q ss_pred hHHHHHHHHHhcCCCCcEEEecC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~s 107 (505)
.+.+ +....+.++.+|+|++
T Consensus 67 ~~~~---~~~~~~~~~~~v~~~a 86 (86)
T cd05191 67 PVLE---EATAKINEGAVVIDLA 86 (86)
T ss_pred CchH---HHHHhcCCCCEEEecC
Confidence 4332 2334456788888863
No 247
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.94 E-value=0.0056 Score=59.47 Aligned_cols=107 Identities=18% Similarity=0.151 Sum_probs=69.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCc---EEEEeCC----hHHH-------HHHHHhhcccCCCCeeeeCCHHHHHhhcC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFP---ISVYNRT----TSKV-------DETLDRAHREGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~---V~v~dr~----~~~~-------~~l~~~~~~~g~~~i~~~~s~~e~v~~l~ 71 (505)
.++|-|+|+|.+|..+|..|.+.|.. |+++||+ .++. ..+.+..... ....++.+.+..
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~-----~~~~~l~~~l~~-- 97 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPE-----KTGGTLKEALKG-- 97 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccC-----cccCCHHHHHhc--
Confidence 35899999999999999999999974 9999999 4443 2233221100 111256566655
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCe
Q 010637 72 RPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 72 ~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
+|+||-++|.+.....+++ .+.++.+|++.+|-.+ +...+...+.|..
T Consensus 98 -~dvlIgaT~~G~~~~~~l~----~m~~~~ivf~lsnP~~---e~~~~~A~~~ga~ 145 (226)
T cd05311 98 -ADVFIGVSRPGVVKKEMIK----KMAKDPIVFALANPVP---EIWPEEAKEAGAD 145 (226)
T ss_pred -CCEEEeCCCCCCCCHHHHH----hhCCCCEEEEeCCCCC---cCCHHHHHHcCCc
Confidence 9999999986643333333 3446788889885443 2344444455554
No 248
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=96.91 E-value=0.0056 Score=61.39 Aligned_cols=93 Identities=10% Similarity=0.063 Sum_probs=63.7
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CCCcEE-EEeCChHHHH-HHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAE-KGFPIS-VYNRTTSKVD-ETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~-~G~~V~-v~dr~~~~~~-~l~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
++|||||+|.||..++..+.+ .+.++. ++|+++++.. .+.+.. ++ ..+.+.+++++. ...|+|++++|+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~------Gi~~~~~~~e~ll~~-~dIDaV~iaTp~ 74 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARAREL------GVKTSAEGVDGLLAN-PDIDIVFDATSA 74 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHC------CCCEEECCHHHHhcC-CCCCEEEECCCc
Confidence 589999999999999888875 356665 6799887533 233221 23 345678888864 347899999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
....+ ... ..+..|..|+|.+...
T Consensus 75 ~~H~e-~a~---~al~aGk~VIdekPa~ 98 (285)
T TIGR03215 75 KAHAR-HAR---LLAELGKIVIDLTPAA 98 (285)
T ss_pred HHHHH-HHH---HHHHcCCEEEECCccc
Confidence 74433 222 2355789999877654
No 249
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=96.86 E-value=0.045 Score=53.65 Aligned_cols=148 Identities=14% Similarity=0.082 Sum_probs=97.3
Q ss_pred CeeeeCCHHHHHhhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE---eCC
Q 010637 56 PLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL---GMG 132 (505)
Q Consensus 56 ~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i---~~p 132 (505)
++.++++..|+++. +|++|+-+|-|...-.+++.+.+++++|.||.++.|.++.......+.+..+.+... .+.
T Consensus 128 GvkVtsDD~EAvk~---aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa 204 (342)
T PRK00961 128 GLKVTTDDREAVAD---ADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGA 204 (342)
T ss_pred CceEecCcHHHhcC---CCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 56777777788877 999999999998777889999999999999999999987776666665554433332 233
Q ss_pred CCCCHHHhhcCCccccC--CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHH
Q 010637 133 VSGGEEGARHGPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK 210 (505)
Q Consensus 133 vsGg~~~a~~G~~im~g--g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~ 210 (505)
|-|.+ |.++..- .++|..+++-++.+..+ +..+.+-..-.+...-|. ..+.+...+.+.+-+....
T Consensus 205 VPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~------k~ay~~PA~lvspV~DMg-S~VTAv~~aGiL~Y~~~~t 272 (342)
T PRK00961 205 VPEMK-----GQVYIAEGYADEEAVEKLYEIGKKAR------GNAFKMPANLIGPVCDMC-SAVTAIVYAGILAYRDAVT 272 (342)
T ss_pred CCCCC-----CceecccccCCHHHHHHHHHHHHHhC------CCeeecchhhcchhhhHH-HHHHHHHHHHHHHHHHHHH
Confidence 44433 4433333 37888999999999988 556655333233333333 2233334455555555566
Q ss_pred HhCCCCHH
Q 010637 211 HVGGLSNA 218 (505)
Q Consensus 211 ~~g~l~~~ 218 (505)
+..|.+.+
T Consensus 273 qIlgAP~~ 280 (342)
T PRK00961 273 QILGAPAD 280 (342)
T ss_pred HHhcCcHH
Confidence 65534433
No 250
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.85 E-value=0.0051 Score=66.37 Aligned_cols=100 Identities=13% Similarity=0.114 Sum_probs=65.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhccc--------C--CCC-eeeeCCH-H-----HHHhh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE--------G--QLP-LTGHYTP-R-----DFVLS 69 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~--------g--~~~-i~~~~s~-~-----e~v~~ 69 (505)
.++.|+|+|.+|...+..+...|..|.++|+++++.+.+...+... | .-+ .+..++. . .+.+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~ 244 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQ 244 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999877766543210 0 000 0000000 0 03333
Q ss_pred cCCCcEEEEEc-----CCCchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 70 IQRPRSVIILV-----KAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 70 l~~advIil~v-----p~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++.+|+||.++ |.+ .-+.++....+++|.+|||.+..
T Consensus 245 ~~~~DIVI~TalipG~~aP---~Lit~emv~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 245 AKEVDIIITTALIPGKPAP---KLITEEMVDSMKAGSVIVDLAAE 286 (511)
T ss_pred hCCCCEEEECcccCCCCCC---eeehHHHHhhCCCCCEEEEeeeC
Confidence 55689998887 332 11225556778888899888763
No 251
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.85 E-value=0.0038 Score=63.36 Aligned_cols=102 Identities=17% Similarity=0.288 Sum_probs=62.5
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCC-CcEEEEeCChHHHHHHHHhhccc-CC--CCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 5 ALSRIGLAGL-AVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHRE-GQ--LPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 5 ~~~~IgIIGl-G~MG~~lA~~La~~G-~~V~v~dr~~~~~~~l~~~~~~~-g~--~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
+|+||+|||. |.-|..|.+.|+.+. .+|..+..+..+=+.+.+...+. |. ++++ .-+++++ ....+|+||+|
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~-~~~~~~~--~~~~~DvvFla 77 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQ-TIDPEKI--ELDECDVVFLA 77 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccc-cCChhhh--hcccCCEEEEe
Confidence 3679999996 999999999999885 47666655443323333333221 00 0111 1123333 22348999999
Q ss_pred cCCCchHHHHHHHHHhcCCCCcEEEecCCCCchh
Q 010637 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN 113 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~ 113 (505)
+|++.. .+.+..+ +.+|..|||+|+-+--.
T Consensus 78 lPhg~s-~~~v~~l---~~~g~~VIDLSadfR~~ 107 (349)
T COG0002 78 LPHGVS-AELVPEL---LEAGCKVIDLSADFRLK 107 (349)
T ss_pred cCchhH-HHHHHHH---HhCCCeEEECCcccccC
Confidence 999843 4444444 34677799999976443
No 252
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.84 E-value=0.0047 Score=61.81 Aligned_cols=117 Identities=21% Similarity=0.226 Sum_probs=79.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|+|+|-++++++..|++.|. +|+|+||+.++.+++.+.....+ .........++.. +..+|+||-++|.+..
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~--~~~~~~~~~~~~~-~~~~dliINaTp~Gm~ 203 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELG--AAVEAAALADLEG-LEEADLLINATPVGMA 203 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--ccccccccccccc-ccccCEEEECCCCCCC
Confidence 469999999999999999999995 79999999999999987654321 0001112221111 1138999999998855
Q ss_pred HHH---HHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 86 VDQ---TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 86 v~~---vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
-.. .+. ...+.++.++.|.--... .| .+.+..+++|...++
T Consensus 204 ~~~~~~~~~--~~~l~~~~~v~D~vY~P~-~T-plL~~A~~~G~~~id 247 (283)
T COG0169 204 GPEGDSPVP--AELLPKGAIVYDVVYNPL-ET-PLLREARAQGAKTID 247 (283)
T ss_pred CCCCCCCCc--HHhcCcCCEEEEeccCCC-CC-HHHHHHHHcCCeEEC
Confidence 431 222 345788999999855433 33 455666777776544
No 253
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=96.82 E-value=0.044 Score=53.81 Aligned_cols=151 Identities=13% Similarity=0.103 Sum_probs=96.4
Q ss_pred CeeeeCCHHHHHhhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 56 PLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 56 ~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
++.++++..|+++. +|++|+-+|-|...-.+++++.+.+++|.||.++.|.++....+..+.+..+.+...... -+
T Consensus 126 GvkVtsDD~EAv~~---aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~H-Pa 201 (340)
T TIGR01723 126 GLKVTTDDREAVED---ADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYH-PG 201 (340)
T ss_pred CceEecCcHHHhcC---CCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccC-CC
Confidence 56777788888887 999999999998677888999999999999999999987766666555554444333221 12
Q ss_pred CHHHhhcCC-ccccC-CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhC
Q 010637 136 GEEGARHGP-SLMPG-GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVG 213 (505)
Q Consensus 136 g~~~a~~G~-~im~g-g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g 213 (505)
+.++.. |. .+.-| .++|..+++-++.+.++ +..+.+-..-.+...-|. ..+.+...+.+.+-+....+..
T Consensus 202 aVPgt~-~q~Yi~egyAtEEqI~klveL~~sa~------k~ay~~PA~LvspV~DMg-S~VTAv~~aGiL~Y~~~~t~Il 273 (340)
T TIGR01723 202 CVPEMK-GQVYIAEGYASEEAVNKLYELGKKAR------GKAFKMPANLLGPVCDMC-SAVTAIVYAGLLAYRDAVTKIL 273 (340)
T ss_pred CCCCCC-CceEeecccCCHHHHHHHHHHHHHhC------CCeeecchhhccchhhHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 233333 34 33222 38888999999999988 555555332222232332 2223334455555555555555
Q ss_pred CCCHH
Q 010637 214 GLSNA 218 (505)
Q Consensus 214 ~l~~~ 218 (505)
|.+.+
T Consensus 274 gAP~~ 278 (340)
T TIGR01723 274 GAPAD 278 (340)
T ss_pred cCcHH
Confidence 34433
No 254
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.80 E-value=0.013 Score=62.93 Aligned_cols=114 Identities=9% Similarity=0.029 Sum_probs=67.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH-----HHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc-
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-----KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV- 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~-----~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v- 80 (505)
++|+|+|+|.-|.++|+.|.+.|++|+++|+++. ..+++.+.+. .+.......+.+.. +|+||.+-
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi-----~~~~~~~~~~~~~~---~dlVV~Spg 86 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGV-----KLVLGENYLDKLDG---FDVIFKTPS 86 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCC-----EEEeCCCChHHhcc---CCEEEECCC
Confidence 5799999999999999999999999999998753 1233443321 12222222333343 89888863
Q ss_pred -CCC-chHHHHHH---------HHH-hcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeE
Q 010637 81 -KAG-SPVDQTIA---------ALS-EHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 81 -p~~-~~v~~vl~---------~l~-~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
|.. ..+....+ ++. .......|-|.+|++...++.-+...+...|...
T Consensus 87 i~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~ 146 (458)
T PRK01710 87 MRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGYKT 146 (458)
T ss_pred CCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCE
Confidence 111 11222111 111 2222234566677777666666667777766543
No 255
>PRK10206 putative oxidoreductase; Provisional
Probab=96.78 E-value=0.013 Score=60.51 Aligned_cols=112 Identities=13% Similarity=0.122 Sum_probs=71.1
Q ss_pred CcEEEEcccHHHH-HHHHHHHh--CCCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAGLAVMGQ-NLALNVAE--KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGlG~MG~-~lA~~La~--~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
.||||||+|.++. ..+..+.. .+++|. ++|+++++. ++.+... .+..+++.+++++. ...|+|++++|+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~~-----~~~~~~~~~ell~~-~~iD~V~I~tp~ 74 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPIYS-----HIHFTSDLDEVLND-PDVKLVVVCTHA 74 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHhcC-----CCcccCCHHHHhcC-CCCCEEEEeCCc
Confidence 5899999999775 34454533 356765 789997654 4443321 24567899999874 347999999999
Q ss_pred CchHHHHHHHHHhcCCCCc-EEEec-CCCCchhHHHHHHHHHHCCCeEE
Q 010637 83 GSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i 129 (505)
....+-+...+ ..|+ ++++- =.....+.+++.+..+++|+.+.
T Consensus 75 ~~H~~~~~~al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~ 119 (344)
T PRK10206 75 DSHFEYAKRAL----EAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVT 119 (344)
T ss_pred hHHHHHHHHHH----HcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 86655544433 3343 55552 11233566677777777776543
No 256
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.75 E-value=0.0059 Score=64.99 Aligned_cols=120 Identities=18% Similarity=0.263 Sum_probs=72.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--------C--Cc-EEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK--------G--FP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~--------G--~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~ad 74 (505)
+.+|||+|+|.||..++..|.++ | .+ +.+++|++++.+.+. . . ....+++++++++. ...|
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~-~---~---~~~~~~d~~~ll~d-~~iD 74 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVD-L---P---GILLTTDPEELVND-PDID 74 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCC-C---c---ccceeCCHHHHhhC-CCCC
Confidence 36899999999999999888654 3 34 447799977643211 0 0 24567889998864 2369
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCC-CchhHHHHHHHHHHCCCeE-EeCCCCCC
Q 010637 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE-WYLNTERRIHEASQKGLLY-LGMGVSGG 136 (505)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~-~~~~t~~~~~~l~~~gi~~-i~~pvsGg 136 (505)
+|+.+++......+. +...|..|.-|+..... ......++.+..+++|+.| +++.|.||
T Consensus 75 vVve~tg~~~~~~~~---~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~gg 135 (426)
T PRK06349 75 IVVELMGGIEPAREL---ILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVAGG 135 (426)
T ss_pred EEEECCCCchHHHHH---HHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEeecc
Confidence 999998764333333 33456678777743221 1112334445555667754 34545444
No 257
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.73 E-value=0.0054 Score=61.38 Aligned_cols=74 Identities=16% Similarity=0.245 Sum_probs=57.5
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~-MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|||.|. +|.++|..|...|.+|+++++... ++.+.+.. +|+||.+++....
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~---------------------~l~~~~~~---ADIVIsAvg~p~~ 214 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSK---------------------DMASYLKD---ADVIVSAVGKPGL 214 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch---------------------hHHHHHhh---CCEEEECCCCCcc
Confidence 5799999987 999999999999999999986431 34444555 9999999987643
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+.. ..+++|.+|||.+...
T Consensus 215 i~~------~~vk~gavVIDvGi~~ 233 (286)
T PRK14175 215 VTK------DVVKEGAVIIDVGNTP 233 (286)
T ss_pred cCH------HHcCCCcEEEEcCCCc
Confidence 222 2467899999998753
No 258
>PLN02602 lactate dehydrogenase
Probab=96.67 E-value=0.019 Score=59.40 Aligned_cols=99 Identities=13% Similarity=0.184 Sum_probs=61.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHh----hcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDR----AHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~----~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
+||+|||+|.+|..+|..|+..|. ++.++|+++++++..... ....+..++....+.+++ ++ ||+||++.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~~-~d---aDiVVitA 113 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAVT-AG---SDLCIVTA 113 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHHh-CC---CCEEEECC
Confidence 589999999999999999998875 799999998765433221 100000023333466653 33 99999985
Q ss_pred CC----Cch-----------HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 81 KA----GSP-----------VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~----~~~-----------v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
-. +.. ++++...+..+ .+..++|..||-.
T Consensus 114 G~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivvtNPv 157 (350)
T PLN02602 114 GARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIVSNPV 157 (350)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCch
Confidence 32 211 22333455554 4566777777643
No 259
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.66 E-value=0.0087 Score=64.12 Aligned_cols=107 Identities=16% Similarity=0.172 Sum_probs=73.6
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLAGL----AVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGl----G~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
.+|+|||. |.+|..+.++|.+.|| +|+..|...+. + . ++..+.+++|+-+. +|++++++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~---i------~---G~~~~~sl~~lp~~---~Dlavi~v 72 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGE---I------L---GVKAYPSVLEIPDP---VDLAVIVV 72 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCc---c------C---CccccCCHHHCCCC---CCEEEEec
Confidence 46999999 8899999999999999 46555544321 1 1 35677889888665 89999999
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCCCCch-------hHHHHHHHHHHCCCeEEeC
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL-------NTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~-------~t~~~~~~l~~~gi~~i~~ 131 (505)
|.. .+.++++++... .-..+||- +.++.+ ..+++.+..++.|+++++.
T Consensus 73 p~~-~~~~~l~e~~~~-gv~~~vi~-s~gf~e~g~~g~~~~~~l~~~a~~~girvlGP 127 (447)
T TIGR02717 73 PAK-YVPQVVEECGEK-GVKGAVVI-TAGFKEVGEEGAELEQELVEIARKYGMRLLGP 127 (447)
T ss_pred CHH-HHHHHHHHHHhc-CCCEEEEE-CCCccccCcchHHHHHHHHHHHHHcCCEEEec
Confidence 985 678888877663 23344442 333322 2245556666778888764
No 260
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.65 E-value=0.0024 Score=53.29 Aligned_cols=79 Identities=19% Similarity=0.260 Sum_probs=59.2
Q ss_pred CcEEEEcccHHHHHHHHHHH-hCCCc-EEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVA-EKGFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La-~~G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|.|+|+|.+|..++.++. ..|+. +.++|.++.+..+-. . ++.+..+.+++.+.+ .+|+.+++||+.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i-----~---gipV~~~~~~l~~~~-~i~iaii~VP~~- 73 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI-----G---GIPVYGSMDELEEFI-EIDIAIITVPAE- 73 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE-----T---TEEEESSHHHHHHHC-TTSEEEEES-HH-
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE-----C---CEEeeccHHHhhhhh-CCCEEEEEcCHH-
Confidence 47999999999999986544 55776 457899998643211 1 477778999998877 599999999985
Q ss_pred hHHHHHHHHHh
Q 010637 85 PVDQTIAALSE 95 (505)
Q Consensus 85 ~v~~vl~~l~~ 95 (505)
.+.++++++..
T Consensus 74 ~a~~~~~~~~~ 84 (96)
T PF02629_consen 74 AAQEVADELVE 84 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67777777665
No 261
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.64 E-value=0.021 Score=54.39 Aligned_cols=124 Identities=13% Similarity=0.131 Sum_probs=70.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhc-ccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~-~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|.+|..+|.+|+..|. +++++|.+.=....+..+.. .....+-.-+....+.+..+ .+++-+...+..
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~i~~~~~~ 99 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLREL-NSDIQVTALKER 99 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHh-CCCCEEEEehhc
Confidence 3579999999999999999999997 89999988533222222110 00000000011112222221 155656555443
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
-. .+ .+...+..-|+||+++.. +..-..+.+.+.+.++.|+.+.+.|
T Consensus 100 i~-~~---~~~~~~~~~D~Vi~~~d~-~~~r~~l~~~~~~~~ip~i~~~~~g 146 (202)
T TIGR02356 100 VT-AE---NLELLINNVDLVLDCTDN-FATRYLINDACVALGTPLISAAVVG 146 (202)
T ss_pred CC-HH---HHHHHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 11 11 222334556899998755 3444445666777888888776543
No 262
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=96.63 E-value=0.015 Score=61.67 Aligned_cols=126 Identities=17% Similarity=0.092 Sum_probs=78.1
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhh-cccCCCCeeee--CCHHHHHhhcCCCcEEEEE--
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-HREGQLPLTGH--YTPRDFVLSIQRPRSVIIL-- 79 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~-~~~g~~~i~~~--~s~~e~v~~l~~advIil~-- 79 (505)
..+||.|+|+|.-|.+.|+.|.+.|++|+++|.++.. +...... ... ++... ....+... .+|+||..
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~-~~~~~~~~~~~---~i~~~~g~~~~~~~~---~~d~vV~SPG 78 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP-EGLAAQPLLLE---GIEVELGSHDDEDLA---EFDLVVKSPG 78 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc-cchhhhhhhcc---CceeecCccchhccc---cCCEEEECCC
Confidence 3578999999999999999999999999999977655 1111110 000 12221 11112223 38888875
Q ss_pred cCCCch-HHHHHH---------HHHhcC--CCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCH
Q 010637 80 VKAGSP-VDQTIA---------ALSEHM--SPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 80 vp~~~~-v~~vl~---------~l~~~l--~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~ 137 (505)
+|.... ++.... +|.... ...-+-|.+||+...+|.-+...++..|....-++-.|.+
T Consensus 79 i~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p 148 (448)
T COG0771 79 IPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTP 148 (448)
T ss_pred CCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCcc
Confidence 233222 332221 222222 2336778888998888888888899888866656655554
No 263
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.63 E-value=0.01 Score=60.84 Aligned_cols=129 Identities=16% Similarity=0.194 Sum_probs=71.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--------CCcE-EEEeCChHHH-------HHHHHhhcccCCCCeeeeC--CHHHHHh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK--------GFPI-SVYNRTTSKV-------DETLDRAHREGQLPLTGHY--TPRDFVL 68 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~--------G~~V-~v~dr~~~~~-------~~l~~~~~~~g~~~i~~~~--s~~e~v~ 68 (505)
|+|+|||+|.+|+.++..|.++ +.+| .+.|++.... +++.+.... |.+...... +++++.+
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~~~~~~~~~~~~ll~ 79 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLEEIDYEKIKFDEIFE 79 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-CccccCCCCcCCHHHHhc
Confidence 4899999999999999999873 3443 4567664321 222211110 000001112 5666654
Q ss_pred hcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchh-HHHHHHHHHHCCCeE-EeCCCCCCHH
Q 010637 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN-TERRIHEASQKGLLY-LGMGVSGGEE 138 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~-t~~~~~~l~~~gi~~-i~~pvsGg~~ 138 (505)
..+|++|.|.|....-......+.+.|..|.-||..+...... -.++.+..+++|.+| +++.|.||.+
T Consensus 80 --~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~P 149 (326)
T PRK06392 80 --IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGVP 149 (326)
T ss_pred --CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeeccc
Confidence 2489999999753221223444556677888888766543221 223334444556655 4566665543
No 264
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.63 E-value=0.021 Score=58.12 Aligned_cols=98 Identities=10% Similarity=0.058 Sum_probs=60.0
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHh----hcccCCCCeee-eCCHHHHHhhcCCCcEEEEEc
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDR----AHREGQLPLTG-HYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~----~~~~g~~~i~~-~~s~~e~v~~l~~advIil~v 80 (505)
||+|||+|.+|..+|..|+..|. ++.++|+++++++..... ....+..+++. ..+.+++.+ +|+||++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~----aDivvita 76 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCAD----ADIIVITA 76 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCC----CCEEEECC
Confidence 69999999999999999998886 799999988765432221 11000001222 345554433 99999987
Q ss_pred CC----Cch-------------HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 81 KA----GSP-------------VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~----~~~-------------v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
-. +.. ++++...+..+- ++.++|..||-.
T Consensus 77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~ivvsNPv 122 (307)
T cd05290 77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIILITNPL 122 (307)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecCcH
Confidence 32 221 122223444443 567788787754
No 265
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.62 E-value=0.014 Score=58.89 Aligned_cols=120 Identities=12% Similarity=0.158 Sum_probs=72.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCCh---HHHHHHHHhhcccC-CCCeeee--CCHHHHHhhcCCCcEEEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTT---SKVDETLDRAHREG-QLPLTGH--YTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~-V~v~dr~~---~~~~~l~~~~~~~g-~~~i~~~--~s~~e~v~~l~~advIil~ 79 (505)
+++-|+|+|-.|++++..|++.|.+ |+++||++ ++.+++.++....+ ...+..+ .+.+++.+.++.+|+||-+
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINa 206 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNA 206 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEe
Confidence 4688999999999999999999996 99999997 66666554321110 0011111 2222333333448999999
Q ss_pred cCCCchH--HH-HHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE
Q 010637 80 VKAGSPV--DQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 80 vp~~~~v--~~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (505)
+|.+..- +. .+.. ...+.++.+++|.--... .| .+.+..+++|...+
T Consensus 207 Tp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~~ 256 (289)
T PRK12548 207 TLVGMKPNDGETNIKD-TSVFRKDLVVADTVYNPK-KT-KLLEDAEAAGCKTV 256 (289)
T ss_pred CCCCCCCCCCCCCCCc-HHhcCCCCEEEEecCCCC-CC-HHHHHHHHCCCeee
Confidence 9877421 10 0100 134677889999865443 33 44555566665543
No 266
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.61 E-value=0.0043 Score=64.91 Aligned_cols=100 Identities=16% Similarity=0.128 Sum_probs=61.6
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhC-CCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 5 ALSRIGLAGL-AVMGQNLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 5 ~~~~IgIIGl-G~MG~~lA~~La~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+++||+|+|+ |..|..|.+.|.++ +++|..+.++...-+.+................+.+.. .++.+|+||+++|.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~--~~~~~DvVf~Alp~ 114 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDA--DFSDVDAVFCCLPH 114 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHH--HhcCCCEEEEcCCH
Confidence 3568999997 99999999999998 67998887765432222221110000001111112211 12349999999998
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCc
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~ 111 (505)
+ ...+++.. +..|..|||.|+.+-
T Consensus 115 ~-~s~~i~~~----~~~g~~VIDlSs~fR 138 (381)
T PLN02968 115 G-TTQEIIKA----LPKDLKIVDLSADFR 138 (381)
T ss_pred H-HHHHHHHH----HhCCCEEEEcCchhc
Confidence 6 44445444 346889999998753
No 267
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.60 E-value=0.012 Score=59.19 Aligned_cols=119 Identities=17% Similarity=0.194 Sum_probs=74.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhccc-CCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
+++.|+|+|-.|++++..|++.|. +|+++||+.++.+++.+..... +...+.. .+..+..+.+..+|+||-++|.+.
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~-~~~~~~~~~~~~~divINaTp~Gm 206 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVG-VDARGIEDVIAAADGVVNATPMGM 206 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEe-cCHhHHHHHHhhcCEEEEcCCCCC
Confidence 469999999999999999999996 7999999999998887653210 0000111 222211111223899999998764
Q ss_pred hHHH--HHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 85 PVDQ--TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 85 ~v~~--vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
.-.. .++ ...+.++.+++|.--.. ..| .+.+..+++|...++
T Consensus 207 ~~~~~~~~~--~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~~~ 250 (283)
T PRK14027 207 PAHPGTAFD--VSCLTKDHWVGDVVYMP-IET-ELLKAARALGCETLD 250 (283)
T ss_pred CCCCCCCCC--HHHcCCCcEEEEcccCC-CCC-HHHHHHHHCCCEEEc
Confidence 2110 011 12356778999986543 333 445555667765543
No 268
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.60 E-value=0.019 Score=59.23 Aligned_cols=124 Identities=13% Similarity=0.160 Sum_probs=69.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcc-cC--CCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EG--QLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~-~g--~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
..+|.|||+|.+|..+|.+|++.|+ +++++|++.=....+..+... .. +.+..-+....+-+..+ .+++-+..+.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~i-np~v~i~~~~ 102 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKI-NSEVEIVPVV 102 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHH-CCCcEEEEEe
Confidence 3579999999999999999999998 899999886322222111000 00 00000011111222221 1566666665
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
.... ...++++ +..-|+|||++.. +.....+...+.+.++-++.+.+.|
T Consensus 103 ~~~~-~~~~~~~---~~~~DlVid~~D~-~~~r~~in~~~~~~~ip~i~~~~~g 151 (338)
T PRK12475 103 TDVT-VEELEEL---VKEVDLIIDATDN-FDTRLLINDLSQKYNIPWIYGGCVG 151 (338)
T ss_pred ccCC-HHHHHHH---hcCCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 4322 2233333 4556899999754 3333344556667788777665544
No 269
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.60 E-value=0.0061 Score=60.92 Aligned_cols=74 Identities=15% Similarity=0.258 Sum_probs=58.1
Q ss_pred CcEEEEcccHH-HHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVM-GQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~M-G~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|||.|.. |.++|..|.+.|..|++++.. +.++.+.+.. +|+||.+++....
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~---------------------t~~l~~~~~~---ADIVV~avG~~~~ 214 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK---------------------TRDLAAHTRQ---ADIVVAAVGKRNV 214 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCC---------------------CCCHHHHhhh---CCEEEEcCCCcCc
Confidence 57999999877 999999999999999997532 1355566665 9999999987643
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+.. ..+++|.+|||.+...
T Consensus 215 i~~------~~ik~gavVIDVGin~ 233 (285)
T PRK14189 215 LTA------DMVKPGATVIDVGMNR 233 (285)
T ss_pred cCH------HHcCCCCEEEEccccc
Confidence 322 4688999999998754
No 270
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.58 E-value=0.014 Score=63.22 Aligned_cols=44 Identities=9% Similarity=0.148 Sum_probs=39.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH 50 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~ 50 (505)
.+|.|+|+|.+|...+..+...|.+|.++|+++++.+...+.+.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA 209 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGA 209 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence 47999999999999999999999999999999999887776553
No 271
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.55 E-value=0.04 Score=58.91 Aligned_cols=115 Identities=16% Similarity=0.116 Sum_probs=66.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh-HHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~-~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.++|.|+|.|.+|..+|..|++.|++|+++|++. +.+++..++....| ..+.......+.... +|+||.+.-...
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~---~d~vv~~~g~~~ 80 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELG-IELVLGEYPEEFLEG---VDLVVVSPGVPL 80 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC-CEEEeCCcchhHhhc---CCEEEECCCCCC
Confidence 3579999999999999999999999999999985 33332222111110 122233333344444 899998763221
Q ss_pred hHHHHH--------------HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCC
Q 010637 85 PVDQTI--------------AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKG 125 (505)
Q Consensus 85 ~v~~vl--------------~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~g 125 (505)
....+ +.+........|-|.+|++...++.-+...|...|
T Consensus 81 -~~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~g 134 (450)
T PRK14106 81 -DSPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNAG 134 (450)
T ss_pred -CCHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence 11111 11112223234555566666555555566776655
No 272
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.55 E-value=0.037 Score=59.80 Aligned_cols=113 Identities=18% Similarity=0.177 Sum_probs=68.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeC--CHHHHHhhcCCCcEEEEE--cCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHY--TPRDFVLSIQRPRSVIIL--VKA 82 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~--s~~e~v~~l~~advIil~--vp~ 82 (505)
++|.|+|+|..|.++|..|.+.|++|+++|++.....++.+.. ++.... ...+.+.+ +|+||.+ +|.
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~------gi~~~~~~~~~~~~~~---~d~vV~Spgi~~ 86 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVT------GVADISTAEASDQLDS---FSLVVTSPGWRP 86 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhc------CcEEEeCCCchhHhcC---CCEEEeCCCCCC
Confidence 5799999999999999999999999999998876554433321 233321 22333343 8888876 344
Q ss_pred Cch-HHHHHH---------HHHhc------C-CC-CcEEEecCCCCchhHHHHHHHHHHCCCeE
Q 010637 83 GSP-VDQTIA---------ALSEH------M-SP-GDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 83 ~~~-v~~vl~---------~l~~~------l-~~-g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
+.+ +...-+ ++.-. + .+ ..|-|.+|++...++.-+...+...|...
T Consensus 87 ~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~ 150 (473)
T PRK00141 87 DSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAA 150 (473)
T ss_pred CCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcE
Confidence 322 221110 12111 1 12 24556677777666666677777766543
No 273
>PRK08374 homoserine dehydrogenase; Provisional
Probab=96.47 E-value=0.074 Score=54.81 Aligned_cols=128 Identities=16% Similarity=0.273 Sum_probs=69.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHh--------CCCc--EE-EEeCChHH-------HHHHHHhhcccCCC-Cee-----eeC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAE--------KGFP--IS-VYNRTTSK-------VDETLDRAHREGQL-PLT-----GHY 61 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~--------~G~~--V~-v~dr~~~~-------~~~l~~~~~~~g~~-~i~-----~~~ 61 (505)
.++|+|+|+|++|..+++.|.+ .|.+ |. +.|++... .+++.+.....+.. .+. ...
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~ 81 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNF 81 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCC
Confidence 4689999999999999998877 4643 33 44654321 12222211110000 010 012
Q ss_pred CHHHHHhhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCch-hHHHHHHHHHHCCCeEE-eCCCCCCHH
Q 010637 62 TPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL-NTERRIHEASQKGLLYL-GMGVSGGEE 138 (505)
Q Consensus 62 s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~-~t~~~~~~l~~~gi~~i-~~pvsGg~~ 138 (505)
+++++++.. .+|+||-+++. ....+.+. ..+..|.-||-.++.... .-.++.+..+++|..+. .+.+++|.+
T Consensus 82 ~~~ell~~~-~~DVvVd~t~~-~~a~~~~~---~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiP 155 (336)
T PRK08374 82 SPEEIVEEI-DADIVVDVTND-KNAHEWHL---EALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTP 155 (336)
T ss_pred CHHHHHhcC-CCCEEEECCCc-HHHHHHHH---HHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCC
Confidence 667776432 38999988855 34444443 345577778876664211 22234444445676654 455776654
No 274
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=96.46 E-value=0.028 Score=56.48 Aligned_cols=116 Identities=14% Similarity=0.058 Sum_probs=80.9
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHH-HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|.|. |.+|..+-.+|...|++ .++..+|.+ .+++ .++..+.+++|+.+.. .+|+.++++|..
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~v---------~G~~~y~sv~dlp~~~-~~Dlavi~vpa~ 74 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTTV---------LGLPVFDSVKEAVEET-GANASVIFVPAP 74 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCccee---------cCeeccCCHHHHhhcc-CCCEEEEecCHH
Confidence 468999995 99999999999999999 777777762 1111 1467788999988742 269999999985
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchh-HHHHHHHHHHCCCeEEeCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLN-TERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~-t~~~~~~l~~~gi~~i~~pvsG 135 (505)
.+.++++++...--+ .+||- |....+. .+++.+..++.|+.++++-..|
T Consensus 75 -~v~~~l~e~~~~Gvk-~avIi-s~Gf~e~~~~~l~~~a~~~girilGPNc~G 124 (286)
T TIGR01019 75 -FAADAIFEAIDAGIE-LIVCI-TEGIPVHDMLKVKRYMEESGTRLIGPNCPG 124 (286)
T ss_pred -HHHHHHHHHHHCCCC-EEEEE-CCCCCHHHHHHHHHHHHHcCCEEECCCCce
Confidence 677777776653223 33343 3333333 3566677778899999865544
No 275
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=96.46 E-value=0.011 Score=60.18 Aligned_cols=96 Identities=18% Similarity=0.218 Sum_probs=59.0
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChHHH--HHHHHhhcccCCCCeeeeC---CHHHHHhhcCCCcEEEEE
Q 010637 8 RIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTSKV--DETLDRAHREGQLPLTGHY---TPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 8 ~IgIIGl-G~MG~~lA~~La~~G~--~V~v~dr~~~~~--~~l~~~~~~~g~~~i~~~~---s~~e~v~~l~~advIil~ 79 (505)
||+|||+ |.+|..+|..|+..|+ ++.++|+++..- -.+.. .... .+++.+. ++.+..+ .+|+||++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~-~~~~--~~i~~~~~~~~~~~~~~---daDivvit 74 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSH-IPTA--ASVKGFSGEEGLENALK---GADVVVIP 74 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhc-CCcC--ceEEEecCCCchHHHcC---CCCEEEEe
Confidence 6999999 9999999999998886 799999987221 11111 1000 0233321 2233333 49999998
Q ss_pred cCCC----c-----------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 80 VKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~~----~-----------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
.-.. . .++++...+..+ .++.+||..||-.
T Consensus 75 aG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsNPv 119 (312)
T TIGR01772 75 AGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITNPV 119 (312)
T ss_pred CCCCCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecCch
Confidence 7432 1 233334455555 5777888888754
No 276
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.43 E-value=0.019 Score=58.71 Aligned_cols=93 Identities=12% Similarity=0.172 Sum_probs=58.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcC-CCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQ-RPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~-~advIil~vp~~~~ 85 (505)
.+|+|+|+|-+|..-.+.....|.+|+++||+++|.+.+.+.++.. ....+.++..+.++ ..|+||.+++ ...
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~-----~i~~~~~~~~~~~~~~~d~ii~tv~-~~~ 241 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADH-----VINSSDSDALEAVKEIADAIIDTVG-PAT 241 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcE-----EEEcCCchhhHHhHhhCcEEEECCC-hhh
Confidence 4799999997776555555558999999999999998888776542 22222222222221 2789999888 555
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++..++. |.++-.++-.+..
T Consensus 242 ~~~~l~~----l~~~G~~v~vG~~ 261 (339)
T COG1064 242 LEPSLKA----LRRGGTLVLVGLP 261 (339)
T ss_pred HHHHHHH----HhcCCEEEEECCC
Confidence 5544443 4444444444443
No 277
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.40 E-value=0.045 Score=52.16 Aligned_cols=79 Identities=13% Similarity=0.099 Sum_probs=52.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH-HHHHHHHhhcccCCCCeeeeCC-HHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGHYT-PRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~~s-~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|-|||.|.||...+..|.+.|++|++++++.. .+..+.+.+ .+..... +.+ ..+..+|+||.++.++
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~------~i~~~~~~~~~--~~l~~adlViaaT~d~- 81 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEG------KIRWKQKEFEP--SDIVDAFLVIAATNDP- 81 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCC------CEEEEecCCCh--hhcCCceEEEEcCCCH-
Confidence 5799999999999999999999999999987653 334444332 1322211 111 1233489998888775
Q ss_pred hHHHHHHHHH
Q 010637 85 PVDQTIAALS 94 (505)
Q Consensus 85 ~v~~vl~~l~ 94 (505)
.+...+....
T Consensus 82 elN~~i~~~a 91 (202)
T PRK06718 82 RVNEQVKEDL 91 (202)
T ss_pred HHHHHHHHHH
Confidence 5665554443
No 278
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.40 E-value=0.01 Score=55.15 Aligned_cols=121 Identities=12% Similarity=0.094 Sum_probs=62.8
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
+|.|||+|.||..++.+|++.|. +++++|.+.-....+..........+-.-+....+.++.+ .+++=+.+.+....
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~l-np~v~i~~~~~~~~- 78 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREI-NPFVKIEAINIKID- 78 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHH-CCCCEEEEEEeecC-
Confidence 58999999999999999999998 5999998862222221110000000000011111122221 14444544443211
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC-CCeEEeCCCC
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK-GLLYLGMGVS 134 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~-gi~~i~~pvs 134 (505)
.. .+...++.-++||+++.. +..-..+.+.+.++ ++-|+.+...
T Consensus 79 ~~---~~~~~l~~~DlVi~~~d~-~~~r~~i~~~~~~~~~ip~i~~~~~ 123 (174)
T cd01487 79 EN---NLEGLFGDCDIVVEAFDN-AETKAMLAESLLGNKNKPVVCASGM 123 (174)
T ss_pred hh---hHHHHhcCCCEEEECCCC-HHHHHHHHHHHHHHCCCCEEEEehh
Confidence 11 222334556899999443 33333355555554 7777765433
No 279
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.39 E-value=0.0078 Score=61.90 Aligned_cols=95 Identities=16% Similarity=0.217 Sum_probs=56.9
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCCcEEE--EeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 5 ALSRIGLAGL-AVMGQNLALNVAEKGFPISV--YNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 5 ~~~~IgIIGl-G~MG~~lA~~La~~G~~V~v--~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
+|++|+|+|+ |..|.-|.+.|.+++|++.- +-++.+...+........ +.+... +..++ +. +|++|+++|
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~--l~~~~~-~~~~~-~~---vD~vFla~p 75 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKN--LRVREV-DSFDF-SQ---VQLAFFAAG 75 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcc--eEEeeC-ChHHh-cC---CCEEEEcCC
Confidence 4579999996 99999999999988775432 222322221111110010 012212 22333 33 999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
.+ ....++..+. ..|..|||.|+.+
T Consensus 76 ~~-~s~~~v~~~~---~~G~~VIDlS~~f 100 (336)
T PRK05671 76 AA-VSRSFAEKAR---AAGCSVIDLSGAL 100 (336)
T ss_pred HH-HHHHHHHHHH---HCCCeEEECchhh
Confidence 75 4454555443 3688999999865
No 280
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.39 E-value=0.026 Score=56.88 Aligned_cols=120 Identities=17% Similarity=0.174 Sum_probs=74.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh---HHHHHHHHhhcccCCCCeeeeCCHHH---HHhhcCCCcEEEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTT---SKVDETLDRAHREGQLPLTGHYTPRD---FVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~---~~~~~l~~~~~~~g~~~i~~~~s~~e---~v~~l~~advIil~ 79 (505)
.++.|||+|-.+++++..|+..|. +|+++||++ ++.+.+.+.........+. ..++++ +.+.+..+|+||-+
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~-~~~~~~~~~l~~~~~~aDivINa 203 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVT-VTDLADQQAFAEALASADILTNG 203 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEE-EechhhhhhhhhhcccCCEEEEC
Confidence 469999999999999999999886 799999995 4777776543211000112 223322 22234458999999
Q ss_pred cCCCchH--HH-HHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 80 VKAGSPV--DQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 80 vp~~~~v--~~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
+|.+..- +. .... ...++++.+++|.--.. ..| .+.+..+++|...++
T Consensus 204 Tp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~~~ 254 (288)
T PRK12749 204 TKVGMKPLENESLVND-ISLLHPGLLVTECVYNP-HMT-KLLQQAQQAGCKTID 254 (288)
T ss_pred CCCCCCCCCCCCCCCc-HHHCCCCCEEEEecCCC-ccC-HHHHHHHHCCCeEEC
Confidence 9876421 11 1100 12366788999986443 334 455666677766543
No 281
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=96.38 E-value=0.027 Score=48.53 Aligned_cols=105 Identities=11% Similarity=0.126 Sum_probs=60.4
Q ss_pred cccHHHHHHHHHHHhC----CCcEE-EEeCChHHHH-HHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 13 GLAVMGQNLALNVAEK----GFPIS-VYNRTTSKVD-ETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 13 GlG~MG~~lA~~La~~----G~~V~-v~dr~~~~~~-~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|.||+.++..|.+. +++|. +++|+ .... ....... +.....+++++++.. .+|+||-|.+. +.+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~dvvVE~t~~-~~~ 72 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWAASFP-----DEAFTTDLEELIDDP-DIDVVVECTSS-EAV 72 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHHHHHT-----HSCEESSHHHHHTHT-T-SEEEE-SSC-HHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhhhhcc-----cccccCCHHHHhcCc-CCCEEEECCCc-hHH
Confidence 8999999999999987 46655 67888 1110 0111111 135678999998843 39999999544 455
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCch---hHHHHHHHHHHCCCeE
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYL---NTERRIHEASQKGLLY 128 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~---~t~~~~~~l~~~gi~~ 128 (505)
.+.+ .+.|..|.-||..+..... .-.++.+..++.|.+|
T Consensus 73 ~~~~---~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~ 114 (117)
T PF03447_consen 73 AEYY---EKALERGKHVVTANKGALADEALYEELREAARKNGVRI 114 (117)
T ss_dssp HHHH---HHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EE
T ss_pred HHHH---HHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEE
Confidence 4443 4456688888887766544 2222333444556654
No 282
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.35 E-value=0.0091 Score=61.48 Aligned_cols=92 Identities=15% Similarity=0.237 Sum_probs=58.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcE---EEEeCChHHHHHHHHhhcccCCCCeeeeC-CHHHHHhhcCCCcEEEEEc
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPI---SVYNRTTSKVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V---~v~dr~~~~~~~l~~~~~~~g~~~i~~~~-s~~e~v~~l~~advIil~v 80 (505)
+++|+|||+ |..|..+.+.|.++||++ ....++.+.-+.+.-.+ . .+...+ +..++ + .+|+||+|+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g-~----~i~v~d~~~~~~-~---~vDvVf~A~ 71 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG-K----ELKVEDLTTFDF-S---GVDIALFSA 71 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCC-c----eeEEeeCCHHHH-c---CCCEEEECC
Confidence 368999996 999999999999988864 55544433222221111 1 123322 22222 3 389999999
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
|.+ ...++...+. ..|..|||.|+.+
T Consensus 72 g~g-~s~~~~~~~~---~~G~~VIDlS~~~ 97 (334)
T PRK14874 72 GGS-VSKKYAPKAA---AAGAVVIDNSSAF 97 (334)
T ss_pred ChH-HHHHHHHHHH---hCCCEEEECCchh
Confidence 987 4455555443 4678999998754
No 283
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=96.34 E-value=0.035 Score=55.89 Aligned_cols=117 Identities=15% Similarity=0.017 Sum_probs=78.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHH-HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..||.|.|. |.+|..+..+|.+.||+ .+|=.+|.. .+++. ++..+.+++|+.+.. .+|+.+++||..
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~v~---------G~~~y~sv~dlp~~~-~~DlAvi~vp~~ 76 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTTVL---------GLPVFNTVAEAVEAT-GANASVIYVPPP 76 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCeEe---------CeeccCCHHHHhhcc-CCCEEEEEcCHH
Confidence 468999997 88999999999999997 665455431 11111 367788998887621 269999999985
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
.+.+++++....--+ ..||-.+.-...+.+++.+..++.|++++++...|
T Consensus 77 -~v~~~l~e~~~~gvk-~avI~s~Gf~~~~~~~l~~~a~~~girvlGPNc~G 126 (291)
T PRK05678 77 -FAADAILEAIDAGID-LIVCITEGIPVLDMLEVKAYLERKKTRLIGPNCPG 126 (291)
T ss_pred -HHHHHHHHHHHCCCC-EEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCCc
Confidence 677777776653223 33333333332333467777788899999876554
No 284
>PTZ00325 malate dehydrogenase; Provisional
Probab=96.33 E-value=0.031 Score=57.12 Aligned_cols=106 Identities=15% Similarity=0.136 Sum_probs=60.8
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCC--CcEEEEeCChHHHH--HHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 5 ALSRIGLAGL-AVMGQNLALNVAEKG--FPISVYNRTTSKVD--ETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 5 ~~~~IgIIGl-G~MG~~lA~~La~~G--~~V~v~dr~~~~~~--~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
+|.||+|||+ |.+|..+|..|+..+ .++.++|++....+ ++...... ..+...+++.+..+.++.+|+||++
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~---~~v~~~td~~~~~~~l~gaDvVVit 83 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTP---AKVTGYADGELWEKALRGADLVLIC 83 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcC---ceEEEecCCCchHHHhCCCCEEEEC
Confidence 4569999999 999999999999655 58999999432211 22211111 1233333322222333449999998
Q ss_pred cCCCc---------------hHHHHHHHHHhcCCCCcEEEecCCCCchhH
Q 010637 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (505)
.-... .++++++.+.++ .+..+|+-.||.....+
T Consensus 84 aG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvdv~~ 132 (321)
T PTZ00325 84 AGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVNSTV 132 (321)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHH
Confidence 73321 122223344443 45667877777654433
No 285
>PRK05442 malate dehydrogenase; Provisional
Probab=96.33 E-value=0.043 Score=56.29 Aligned_cols=100 Identities=15% Similarity=0.127 Sum_probs=60.2
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChH--HHH----HHHHhh-cccCCCCeeeeCCHHHHHhhc
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTTS--KVD----ETLDRA-HREGQLPLTGHYTPRDFVLSI 70 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~-------~V~v~dr~~~--~~~----~l~~~~-~~~g~~~i~~~~s~~e~v~~l 70 (505)
..||+|||+ |.+|..+|..|+..|. ++.++|++++ +++ ++.... .... +..+..+..+.+++
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~--~~~i~~~~y~~~~d- 80 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLA--GVVITDDPNVAFKD- 80 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcC--CcEEecChHHHhCC-
Confidence 458999998 9999999999998764 7999999543 221 122111 0000 12333333333333
Q ss_pred CCCcEEEEEcCC----Cc-----------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 71 QRPRSVIILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 71 ~~advIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+|+||++.-. +. .++++...+..+..+..++|-.||-.
T Consensus 81 --aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv 133 (326)
T PRK05442 81 --ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA 133 (326)
T ss_pred --CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence 9999997632 21 13444456666565677888887643
No 286
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.32 E-value=0.036 Score=58.84 Aligned_cols=110 Identities=17% Similarity=0.099 Sum_probs=66.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc--
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS-- 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~-- 84 (505)
.+|.|||+|.+|.++|+.|.+.|++|+++|++++......... . ......+.+... +|+||.+.+...
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~--~-----~~~~~~~~~~~~---~dlvV~s~gi~~~~ 73 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIH--E-----RYLENAEEFPEQ---VDLVVRSPGIKKEH 73 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHh--h-----hhcCCcHHHhcC---CCEEEECCCCCCCc
Confidence 4799999999999999999999999999998876433211000 0 011233333343 788888764432
Q ss_pred -hHHHHH--------H-HH-Hhc--C-CCCcEEEecCCCCchhHHHHHHHHHHCCC
Q 010637 85 -PVDQTI--------A-AL-SEH--M-SPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 85 -~v~~vl--------~-~l-~~~--l-~~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (505)
.+.... + .+ ... + ....|-|.+|++...++.-+...+...|.
T Consensus 74 ~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~ 129 (418)
T PRK00683 74 PWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGI 129 (418)
T ss_pred HHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 122221 1 11 111 1 22346677777777777667777777664
No 287
>PRK08328 hypothetical protein; Provisional
Probab=96.32 E-value=0.026 Score=55.00 Aligned_cols=121 Identities=14% Similarity=0.107 Sum_probs=71.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeC-CHHHH----HhhcCCCcEEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHY-TPRDF----VLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~-s~~e~----v~~l~~advIil~ 79 (505)
..+|.|||+|-.|+.++.+|+..|. +++++|.+.-....+..+.... .-..-. .-.++ +..+ .+++.+.+
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~---~~dvG~~~k~~~a~~~l~~~-np~v~v~~ 102 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHW---EEDLGKNPKPLSAKWKLERF-NSDIKIET 102 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccC---hhhcCchHHHHHHHHHHHHh-CCCCEEEE
Confidence 3579999999999999999999996 6889988765544443221000 000000 01111 1211 27777777
Q ss_pred cCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
.+.. ..++-+++ .++.-++|||+.-. +..-..+.+.+.+.++.++.+.+.|
T Consensus 103 ~~~~-~~~~~~~~---~l~~~D~Vid~~d~-~~~r~~l~~~~~~~~ip~i~g~~~g 153 (231)
T PRK08328 103 FVGR-LSEENIDE---VLKGVDVIVDCLDN-FETRYLLDDYAHKKGIPLVHGAVEG 153 (231)
T ss_pred Eecc-CCHHHHHH---HHhcCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEeecc
Confidence 5543 11222233 34566899998766 3333334556677888888776654
No 288
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.32 E-value=0.019 Score=58.40 Aligned_cols=99 Identities=16% Similarity=0.222 Sum_probs=59.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChHH--HHHHHHhhcccCCCCeeee-CCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTSK--VDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~--~V~v~dr~~~~--~~~l~~~~~~~g~~~i~~~-~s~~e~v~~l~~advIil~v 80 (505)
|||+|||+ |.+|..+|..|+..|. ++.++|++..+ +-.+...... ..+..+ .+ .++.+.++.+|+||++.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~---~~i~~~~~~-~~~y~~~~daDivvita 76 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTP---AKVTGYLGP-EELKKALKGADVVVIPA 76 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCc---ceEEEecCC-CchHHhcCCCCEEEEeC
Confidence 58999999 9999999999998884 79999988111 1112111110 024432 22 11122233499999987
Q ss_pred CC----Cc-----------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 81 KA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
-. +. .++++.+.+.++ .+..+||..||-.
T Consensus 77 G~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtNPv 120 (310)
T cd01337 77 GVPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISNPV 120 (310)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCch
Confidence 33 21 233333455555 4677888888753
No 289
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.29 E-value=0.05 Score=58.54 Aligned_cols=114 Identities=17% Similarity=0.165 Sum_probs=70.9
Q ss_pred cCCCCcEEEEcccHHHHH-HHHHHHhCCCcEEEEeCChH-HHHHHHHhhcccCCCCeeee-CCHHHHHhhcCCCcEEEEE
Q 010637 3 ASALSRIGLAGLAVMGQN-LALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 3 ~~~~~~IgIIGlG~MG~~-lA~~La~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~-~s~~e~v~~l~~advIil~ 79 (505)
+...++|.|||+|..|.+ +|+.|.++|++|+++|.++. ..+.+.+.+ +... ....+.++ .+|+||.+
T Consensus 4 ~~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~g-------i~~~~~~~~~~~~---~~d~vv~s 73 (461)
T PRK00421 4 LRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELG-------AIIFIGHDAENIK---DADVVVYS 73 (461)
T ss_pred cCCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCC-------CEEeCCCCHHHCC---CCCEEEEC
Confidence 333468999999999999 89999999999999997653 233443322 3332 12223333 38988875
Q ss_pred c--CCCch-HHHHH---------HHHHh-cCC-CCcEEEecCCCCchhHHHHHHHHHHCCC
Q 010637 80 V--KAGSP-VDQTI---------AALSE-HMS-PGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 80 v--p~~~~-v~~vl---------~~l~~-~l~-~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (505)
- |.+.+ +.... -+++. .+. ...|-|.+|++...++.-+...++..|.
T Consensus 74 pgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~ 134 (461)
T PRK00421 74 SAIPDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGL 134 (461)
T ss_pred CCCCCCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 3 33222 22211 12322 222 2357777888887777777788887774
No 290
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.28 E-value=0.046 Score=59.32 Aligned_cols=112 Identities=14% Similarity=0.130 Sum_probs=69.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeee--CCHHHHHhhcCCCcEEEEEc--CC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH--YTPRDFVLSIQRPRSVIILV--KA 82 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~--~s~~e~v~~l~~advIil~v--p~ 82 (505)
.+|.|+|+|..|.+.++.|...|++|+++|+++...+.+.+.+ +... ....+.+.. +|+||.+- |.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g-------~~~~~~~~~~~~l~~---~D~VV~SpGi~~ 82 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERG-------VATVSTSDAVQQIAD---YALVVTSPGFRP 82 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCC-------CEEEcCcchHhHhhc---CCEEEECCCCCC
Confidence 4799999999999999999999999999998877665544432 2222 222333333 89888864 33
Q ss_pred Cch-HHHHHH---------HHHhcC------C-C-CcEEEecCCCCchhHHHHHHHHHHCCCeE
Q 010637 83 GSP-VDQTIA---------ALSEHM------S-P-GDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 83 ~~~-v~~vl~---------~l~~~l------~-~-g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
..+ +...-+ ++.-.+ . + .-|-|.+||+...++.-+...+...|...
T Consensus 83 ~~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~ 146 (488)
T PRK03369 83 TAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRS 146 (488)
T ss_pred CCHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCce
Confidence 222 111110 121111 1 2 24557777777766666777787776543
No 291
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.27 E-value=0.0057 Score=54.22 Aligned_cols=123 Identities=16% Similarity=0.208 Sum_probs=70.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhc-ccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~-~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|.|+|+|.+|+.+|.+|+..|. ++.++|.+.=....+..... .....+..-+...++.+..+ .|++=+.+.+..-
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~-np~~~v~~~~~~~ 81 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEI-NPDVEVEAIPEKI 81 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHH-STTSEEEEEESHC
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHh-cCceeeeeeeccc
Confidence 589999999999999999999998 69999987532222211100 00000011112223333322 1445555555532
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
....+..+. ..-++||+++.. +.....+.+.+.++++.|+.+.+.|
T Consensus 82 -~~~~~~~~~---~~~d~vi~~~d~-~~~~~~l~~~~~~~~~p~i~~~~~g 127 (135)
T PF00899_consen 82 -DEENIEELL---KDYDIVIDCVDS-LAARLLLNEICREYGIPFIDAGVNG 127 (135)
T ss_dssp -SHHHHHHHH---HTSSEEEEESSS-HHHHHHHHHHHHHTT-EEEEEEEET
T ss_pred -ccccccccc---cCCCEEEEecCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 233334444 345899998765 4455567778888899999877654
No 292
>PRK05086 malate dehydrogenase; Provisional
Probab=96.25 E-value=0.036 Score=56.49 Aligned_cols=97 Identities=19% Similarity=0.253 Sum_probs=58.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHh---CCCcEEEEeCChHHH---HHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEE
Q 010637 7 SRIGLAGL-AVMGQNLALNVAE---KGFPISVYNRTTSKV---DETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~---~G~~V~v~dr~~~~~---~~l~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIi 77 (505)
|||+|||+ |.+|..++..|.. .++++.++|+++... -.+...... ..+.. .+++.+.+ +.+|+||
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~---~~i~~~~~~d~~~~l---~~~DiVI 74 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTA---VKIKGFSGEDPTPAL---EGADVVL 74 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCC---ceEEEeCCCCHHHHc---CCCCEEE
Confidence 58999999 9999999988854 356899999986431 112111100 02332 23433333 4499999
Q ss_pred EEcCCCc---------------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 78 ILVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 78 l~vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
++.-... .++++++.+.++ .+..+|+..||-.
T Consensus 75 itaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~ 121 (312)
T PRK05086 75 ISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPV 121 (312)
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCch
Confidence 9984311 233444555554 4667888887754
No 293
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.24 E-value=0.015 Score=58.02 Aligned_cols=74 Identities=22% Similarity=0.321 Sum_probs=58.1
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~-MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||-|. +|.++|..|.++|..|+++++.. .++++.+.. +|+||.++.....
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T---------------------~~l~~~~~~---ADIvi~avG~p~~ 215 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT---------------------KNLRHHVRN---ADLLVVAVGKPGF 215 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC---------------------CCHHHHHhh---CCEEEEcCCCccc
Confidence 5799999988 99999999999999999997542 245556665 9999999965543
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+.. ..+++|.+|||.+...
T Consensus 216 v~~------~~vk~gavVIDvGin~ 234 (285)
T PRK10792 216 IPG------EWIKPGAIVIDVGINR 234 (285)
T ss_pred ccH------HHcCCCcEEEEccccc
Confidence 332 4578999999998653
No 294
>PLN00106 malate dehydrogenase
Probab=96.23 E-value=0.024 Score=57.98 Aligned_cols=100 Identities=16% Similarity=0.200 Sum_probs=58.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChHHH--HHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTSKV--DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~--~V~v~dr~~~~~--~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.||+|||+ |.+|..+|..|+..+. ++.++|+++... .++...... ..+....+..+..+.++.+|+||++.-
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~---~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTP---AQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcC---ceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 58999999 9999999999997765 899999987211 112111110 023322233223334445999999863
Q ss_pred C----CchHH-----------HHHHHHHhcCCCCcEEEecCCCC
Q 010637 82 A----GSPVD-----------QTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 82 ~----~~~v~-----------~vl~~l~~~l~~g~iIId~st~~ 110 (505)
. +..-+ ++++.+..+ .+..+|+..||-.
T Consensus 96 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~-~p~aivivvSNPv 138 (323)
T PLN00106 96 VPRKPGMTRDDLFNINAGIVKTLCEAVAKH-CPNALVNIISNPV 138 (323)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCCc
Confidence 2 22222 222333333 3666777777754
No 295
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.20 E-value=0.018 Score=58.52 Aligned_cols=70 Identities=13% Similarity=0.178 Sum_probs=49.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp 81 (505)
|+|.|+| .|.+|+.++..|.++||+|.+.+|++++...+...+. .+.. ..+++.+.+.++.+|+||.++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v-----~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGA-----ELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCC-----EEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 4899998 5999999999999999999999999876544433221 1111 1245555555666899888754
No 296
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.15 E-value=0.031 Score=57.25 Aligned_cols=98 Identities=14% Similarity=0.138 Sum_probs=58.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChHH--HHH----HHHhh-cccCCCCeeeeCCHHHHHhhcC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTTSK--VDE----TLDRA-HREGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~-------~V~v~dr~~~~--~~~----l~~~~-~~~g~~~i~~~~s~~e~v~~l~ 71 (505)
+||+|||+ |.+|.++|..|+..|. ++.++|++++. ++. +.... .... ++.+..+..+.+++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~--~~~i~~~~~~~~~d-- 78 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLA--EIVITDDPNVAFKD-- 78 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccC--ceEEecCcHHHhCC--
Confidence 48999999 9999999999998876 79999995432 221 11110 0000 12333333233333
Q ss_pred CCcEEEEEcCC----Cch-----------HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 72 RPRSVIILVKA----GSP-----------VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 72 ~advIil~vp~----~~~-----------v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+|+||++.-. +.. ++++...+..+-++..++|..||-
T Consensus 79 -aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNP 130 (322)
T cd01338 79 -ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNP 130 (322)
T ss_pred -CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCc
Confidence 9999998632 211 344445666655456777777753
No 297
>PLN02477 glutamate dehydrogenase
Probab=96.12 E-value=0.042 Score=57.90 Aligned_cols=114 Identities=17% Similarity=0.148 Sum_probs=73.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEE-EEeCC----------hHHHHHHHHhhcccCCC-CeeeeCCHHHHHhhcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPIS-VYNRT----------TSKVDETLDRAHREGQL-PLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~-v~dr~----------~~~~~~l~~~~~~~g~~-~i~~~~s~~e~v~~l~~ad 74 (505)
++|+|.|+|++|+.+|+.|.+.|.+|. +.|.+ .+.+.+..++...-.++ +... -+.+++... +||
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~-i~~~e~l~~--~~D 283 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDP-IDPDDILVE--PCD 283 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceE-ecCccceec--ccc
Confidence 589999999999999999999999988 77876 55543333322110000 1111 133444332 489
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
+++-|--.+....+.+.. + +=++|+...|... |.+..+.|.++|+.|+.
T Consensus 284 vliP~Al~~~I~~~na~~----i-~ak~I~egAN~p~--t~ea~~~L~~rGI~~~P 332 (410)
T PLN02477 284 VLIPAALGGVINKENAAD----V-KAKFIVEAANHPT--DPEADEILRKKGVVVLP 332 (410)
T ss_pred EEeeccccccCCHhHHHH----c-CCcEEEeCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 888775544322233333 3 4578999988865 66677889999998874
No 298
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.10 E-value=0.041 Score=58.51 Aligned_cols=117 Identities=10% Similarity=0.026 Sum_probs=77.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEE-e----------CChHHHHHHHHhhc--ccCC---CCeeeeCCHHHHHhhc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVY-N----------RTTSKVDETLDRAH--REGQ---LPLTGHYTPRDFVLSI 70 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~-d----------r~~~~~~~l~~~~~--~~g~---~~i~~~~s~~e~v~~l 70 (505)
++|+|.|.|++|..+|+.|.+.|.+|... | .+.+.+.+..+... -.+. .+... .+.+++...
T Consensus 233 ~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~-i~~~~i~~~- 310 (445)
T PRK09414 233 KRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEY-LEGGSPWSV- 310 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCee-cCCcccccc-
Confidence 58999999999999999999999998876 7 56665544443210 0000 00111 133333331
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 71 QRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 71 ~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
.||+++-|...+....+....+.+ .+=++|+...|... |.+..+.|.++|+.++.
T Consensus 311 -d~DVliPaAl~n~It~~~a~~i~~--~~akiIvEgAN~p~--t~~A~~~L~~rGI~~vP 365 (445)
T PRK09414 311 -PCDIALPCATQNELDEEDAKTLIA--NGVKAVAEGANMPS--TPEAIEVFLEAGVLFAP 365 (445)
T ss_pred -CCcEEEecCCcCcCCHHHHHHHHH--cCCeEEEcCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 489999998876555555555543 13478888888764 66677889999998874
No 299
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.06 E-value=0.028 Score=47.76 Aligned_cols=86 Identities=16% Similarity=0.168 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchHHH-HHHHHHh
Q 010637 17 MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQ-TIAALSE 95 (505)
Q Consensus 17 MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~-vl~~l~~ 95 (505)
-+..|+..|.+.|.+|.+||..-........... . +++.++++++.++. +|.||++++... .+. -.+.+..
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~-~---~~~~~~~~~~~~~~---~D~vvl~t~h~~-f~~l~~~~~~~ 89 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKL-E---GVEVCDDLEEALKG---ADAVVLATDHDE-FRELDWEEIAK 89 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHH-H---CEEEESSHHHHHTT---ESEEEESS--GG-GGCCGHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCc-c---ceEEecCHHHHhcC---CCEEEEEecCHH-HhccCHHHHHH
Confidence 4567899999999999999988765443331100 1 37788899998887 999999998864 443 3467777
Q ss_pred cCCCCcEEEecCCCC
Q 010637 96 HMSPGDCIIDGGNEW 110 (505)
Q Consensus 96 ~l~~g~iIId~st~~ 110 (505)
.+.++.+|+|+-+..
T Consensus 90 ~~~~~~~iiD~~~~~ 104 (106)
T PF03720_consen 90 LMRKPPVIIDGRNIL 104 (106)
T ss_dssp HSCSSEEEEESSSTS
T ss_pred hcCCCCEEEECcccc
Confidence 788899999987754
No 300
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.06 E-value=0.016 Score=53.73 Aligned_cols=83 Identities=17% Similarity=0.280 Sum_probs=58.6
Q ss_pred CCCcEEEEcccHHHHHHHHH-HH-hCCCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 5 ALSRIGLAGLAVMGQNLALN-VA-EKGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~-La-~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.+.++.|||.|++|++++.. +. ++|+++. +||.+++++-..... ..+.-.+++++.++. .+.|+.|+|||
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~------v~V~~~d~le~~v~~-~dv~iaiLtVP 155 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGD------VPVYDLDDLEKFVKK-NDVEIAILTVP 155 (211)
T ss_pred cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCC------eeeechHHHHHHHHh-cCccEEEEEcc
Confidence 45689999999999999843 44 6788765 789999876443322 124445667777764 14799999999
Q ss_pred CCchHHHHHHHHHh
Q 010637 82 AGSPVDQTIAALSE 95 (505)
Q Consensus 82 ~~~~v~~vl~~l~~ 95 (505)
+. ....+.+.|..
T Consensus 156 a~-~AQ~vad~Lv~ 168 (211)
T COG2344 156 AE-HAQEVADRLVK 168 (211)
T ss_pred HH-HHHHHHHHHHH
Confidence 95 56777776665
No 301
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.05 E-value=0.056 Score=55.08 Aligned_cols=124 Identities=21% Similarity=0.260 Sum_probs=74.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--------CCcEE---EEeCChHHHHHHHHhhcccCCCCeeeeCCH-----HHHHhh
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK--------GFPIS---VYNRTTSKVDETLDRAHREGQLPLTGHYTP-----RDFVLS 69 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~--------G~~V~---v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~-----~e~v~~ 69 (505)
.++|+|+|+|.+|+++++-|.++ |.++. +.+|+..+...+.-... ....+++ .+++..
T Consensus 3 ~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 76 (333)
T COG0460 3 TVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNA------EVWTTDGALSLGDEVLLD 76 (333)
T ss_pred eEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccch------hhheecccccccHhhhcc
Confidence 46899999999999999999875 33433 45776655431110000 1122233 344432
Q ss_pred cCCCcEEEEEcCC-CchHHHHHHHHHhcCCCCcEEEecCCCCchhHH--HHHHHHHHCCCe-EEeCCCCCCHH
Q 010637 70 IQRPRSVIILVKA-GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTE--RRIHEASQKGLL-YLGMGVSGGEE 138 (505)
Q Consensus 70 l~~advIil~vp~-~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~--~~~~~l~~~gi~-~i~~pvsGg~~ 138 (505)
+..|+|+.+++. -...+. ++.+...+..|..||...... -... ++.+..++.|.. +.++.|.||.+
T Consensus 77 -~~~dvvve~~~~d~~~~~~-~~~~~~al~~GkhVVTaNK~~-lA~~~~el~~~A~~~g~~l~yEAtV~gGiP 146 (333)
T COG0460 77 -EDIDVVVELVGGDVEPAEP-ADLYLKALENGKHVVTANKAL-LALHYHELREAAEKNGVKLLYEATVGGGIP 146 (333)
T ss_pred -ccCCEEEecCcccCCchhh-HHHHHHHHHcCCeEECCCchH-hHhhHHHHHHHHHHhCCeEEEEeeeccCcc
Confidence 346899998877 445565 677778888999888544332 2222 234444555654 46777777754
No 302
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.04 E-value=0.018 Score=57.81 Aligned_cols=73 Identities=12% Similarity=0.273 Sum_probs=54.7
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~-MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|||.|. .|.+++..|.+.|.+|++++|... ++.+.+.. +|+||.+++.+..
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~---------------------~L~~~~~~---aDIvI~AtG~~~~ 215 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQ---------------------NLPELVKQ---ADIIVGAVGKPEL 215 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCch---------------------hHHHHhcc---CCEEEEccCCCCc
Confidence 4799999997 999999999999999999997321 22223333 9999999965432
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++ . +.+++|.+|+|.+..
T Consensus 216 v~---~---~~lk~gavViDvg~n 233 (283)
T PRK14192 216 IK---K---DWIKQGAVVVDAGFH 233 (283)
T ss_pred CC---H---HHcCCCCEEEEEEEe
Confidence 22 1 347899999998764
No 303
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.04 E-value=0.016 Score=58.65 Aligned_cols=75 Identities=33% Similarity=0.582 Sum_probs=59.2
Q ss_pred HHHHHHHHhccC-CcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 010637 219 ELAEIFDEWNKG-ELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (505)
Q Consensus 219 ~i~~v~~~~~~g-~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~ 297 (505)
+..++++-|+.+ .++|++++...+++.. +++ .+.++.+.||. ++++|+++.|.+.|+|+|++..+++.|+.+.
T Consensus 201 d~~~~~~~~~~~~~~~s~~l~~~~~~~~~-~~~--~~~l~~~~KD~---~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~ 274 (299)
T PRK12490 201 DVEDVARLWRNGSVIRSWLLDLTVKALAE-DPK--LAGIKGYVNDS---GEGRWTVEEAIELAVAAPVIAASLFMRFASQ 274 (299)
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHHhh-CCC--hhhhhHHHHhc---CcHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 577788889864 5899999998888754 322 25677777764 4667999999999999999999877888887
Q ss_pred ch
Q 010637 298 LK 299 (505)
Q Consensus 298 ~~ 299 (505)
.+
T Consensus 275 ~~ 276 (299)
T PRK12490 275 ED 276 (299)
T ss_pred cc
Confidence 65
No 304
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.02 E-value=0.049 Score=49.76 Aligned_cols=77 Identities=12% Similarity=0.081 Sum_probs=50.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeee-CCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~-~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|-|||.|.+|...++.|.+.|++|++++ ++..+++.+.. .+... ..+++ ..+..+|+||.++.++ .
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIs--p~~~~~l~~l~------~i~~~~~~~~~--~dl~~a~lViaaT~d~-e 82 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVS--PEICKEMKELP------YITWKQKTFSN--DDIKDAHLIYAATNQH-A 82 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEc--CccCHHHHhcc------CcEEEecccCh--hcCCCceEEEECCCCH-H
Confidence 579999999999999999999999999995 34444444321 12221 11111 1244589888887664 5
Q ss_pred HHHHHHHHH
Q 010637 86 VDQTIAALS 94 (505)
Q Consensus 86 v~~vl~~l~ 94 (505)
+...+....
T Consensus 83 ~N~~i~~~a 91 (157)
T PRK06719 83 VNMMVKQAA 91 (157)
T ss_pred HHHHHHHHH
Confidence 666664443
No 305
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.02 E-value=0.094 Score=56.34 Aligned_cols=113 Identities=15% Similarity=0.043 Sum_probs=67.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~~ 84 (505)
++|.|||+|..|.+.|..|.+.|++|.++|+.+.....+.+.+ +.......+.+. .+|+||.+ +|...
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g-------~~~~~~~~~~~~---~~d~vv~sp~i~~~~ 79 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAG-------ITTADLRTADWS---GFAALVLSPGVPLTH 79 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcC-------ccccCCChhHHc---CCCEEEECCCCCccC
Confidence 5799999999999999999999999999998765444443322 222221112223 38988763 23221
Q ss_pred -----hHHHHHH---------HHHhcC------CCCcEEEecCCCCchhHHHHHHHHHHCCCeEE
Q 010637 85 -----PVDQTIA---------ALSEHM------SPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 85 -----~v~~vl~---------~l~~~l------~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (505)
.+....+ ++.... ....|-|.+|++...++.-+...++..|..+.
T Consensus 80 ~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~ 144 (460)
T PRK01390 80 PKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGRDVQ 144 (460)
T ss_pred CcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeE
Confidence 2332221 111111 22345566777776666666777777776543
No 306
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=96.01 E-value=0.098 Score=53.58 Aligned_cols=98 Identities=13% Similarity=0.181 Sum_probs=59.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCCh--HHHHHHH----Hhh-cccCCCCeeeeCCHHHHHhhcC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTT--SKVDETL----DRA-HREGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~-------~V~v~dr~~--~~~~~l~----~~~-~~~g~~~i~~~~s~~e~v~~l~ 71 (505)
.||+|||+ |.+|.++|..|...|. ++.++|+++ ++++... ... .... +..+..+..+.+++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~--~~~i~~~~~~~~~d-- 79 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLA--GVVATTDPEEAFKD-- 79 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccC--CcEEecChHHHhCC--
Confidence 48999998 9999999999998885 799999964 2222211 111 0000 12232333233333
Q ss_pred CCcEEEEEcCC----Cc-----------hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 72 RPRSVIILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 72 ~advIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+|+||++.-. +. .++++...+.++-++..++|..||-
T Consensus 80 -aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNP 131 (323)
T TIGR01759 80 -VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNP 131 (323)
T ss_pred -CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCc
Confidence 9999998632 21 1444446666665557777777764
No 307
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.00 E-value=0.011 Score=56.95 Aligned_cols=80 Identities=18% Similarity=0.272 Sum_probs=51.3
Q ss_pred CcEEEEcccHHHHHHHHHH--HhCCCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 7 SRIGLAGLAVMGQNLALNV--AEKGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~L--a~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
.+|+|||+|.+|..++..+ ...|+++. ++|+++++...... + ..+....++.+++.. ..+|.+++++|..
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~-g-----~~v~~~~~l~~li~~-~~iD~ViIa~P~~ 157 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIG-G-----IPVYHIDELEEVVKE-NDIEIGILTVPAE 157 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeC-C-----eEEcCHHHHHHHHHH-CCCCEEEEeCCch
Confidence 4799999999999999863 35688776 57988766432211 0 012223455565543 2489999999986
Q ss_pred chHHHHHHHHH
Q 010637 84 SPVDQTIAALS 94 (505)
Q Consensus 84 ~~v~~vl~~l~ 94 (505)
. ..++.+.+.
T Consensus 158 ~-~~~i~~~l~ 167 (213)
T PRK05472 158 A-AQEVADRLV 167 (213)
T ss_pred h-HHHHHHHHH
Confidence 4 445544443
No 308
>PRK14982 acyl-ACP reductase; Provisional
Probab=95.99 E-value=0.02 Score=58.86 Aligned_cols=111 Identities=16% Similarity=0.220 Sum_probs=72.2
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhC-C-CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEK-G-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~-G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
.++|.|+|+ |.||+.+++.|+.+ | .+|.+++|+.++...+..+... .. ..++++... .+|+|+.+...
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~-----~~-i~~l~~~l~---~aDiVv~~ts~ 225 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGG-----GK-ILSLEEALP---EADIVVWVASM 225 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhcc-----cc-HHhHHHHHc---cCCEEEECCcC
Confidence 357999998 89999999999864 5 5899999999888887654321 01 124444444 49999988755
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvs 134 (505)
...+ +++. ..+.++.++||.+- |.+..... ...|++.++.++.
T Consensus 226 ~~~~--~I~~--~~l~~~~~viDiAv--PRDVd~~v---~~~~V~v~~gG~V 268 (340)
T PRK14982 226 PKGV--EIDP--ETLKKPCLMIDGGY--PKNLDTKV---QGPGIHVLKGGIV 268 (340)
T ss_pred CcCC--cCCH--HHhCCCeEEEEecC--CCCCCccc---CCCCEEEEeCCcc
Confidence 3221 1211 13468899999854 44443221 2357888776543
No 309
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.97 E-value=0.026 Score=53.70 Aligned_cols=125 Identities=13% Similarity=0.232 Sum_probs=70.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhc-cc--CCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-RE--GQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~-~~--g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
..+|.|||+|.+|..++.+|+..|. +++++|.+.-....+..... .. ...+..-+....+.+..+ .|++-+..+.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~l-Np~v~i~~~~ 97 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQEL-NPNVKLSIVE 97 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHH-CCCCEEEEEe
Confidence 3689999999999999999999997 58899877532222221100 00 000000011112222222 2666666665
Q ss_pred CCch-HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 82 AGSP-VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 82 ~~~~-v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
.... ..+-... .+.+=++||++... +.....+.+.+.++++-|+.+.+.|
T Consensus 98 ~~~~~~~~~~~~---~~~~~dvVi~~~d~-~~~~~~ln~~c~~~~ip~i~~~~~G 148 (198)
T cd01485 98 EDSLSNDSNIEE---YLQKFTLVIATEEN-YERTAKVNDVCRKHHIPFISCATYG 148 (198)
T ss_pred cccccchhhHHH---HHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 4311 0111222 23455899988543 4555556778888888888776544
No 310
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=95.97 E-value=0.042 Score=62.01 Aligned_cols=108 Identities=9% Similarity=0.107 Sum_probs=77.5
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC-CCCCCHHHh--------hcCC-c
Q 010637 76 VIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEGA--------RHGP-S 145 (505)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsGg~~~a--------~~G~-~ 145 (505)
||+|+|.. .+.+++.++.+.++++.+|.|.+++...-.....+.+......|++. |+.|.+..- ..|. .
T Consensus 1 vila~Pv~-~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~~ 79 (673)
T PRK11861 1 VLLAAPVA-QTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRNV 79 (673)
T ss_pred CEEEcCHH-HHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCeE
Confidence 68999995 78999999999999999999999998655555544444323569986 777775322 2454 3
Q ss_pred ccc---CCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhH
Q 010637 146 LMP---GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMV 190 (505)
Q Consensus 146 im~---gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v 190 (505)
+++ ..+.++++.++++++.+| ..++.+.+...-..+-++
T Consensus 80 il~p~~~~~~~~~~~~~~l~~~~G------a~~~~~~~~~HD~~~A~i 121 (673)
T PRK11861 80 VLCALPENAPDALARVEAMWRAAR------ADVRAMSAEQHDRVFAAV 121 (673)
T ss_pred EEecCCCCCHHHHHHHHHHHHHcC------CEEEECCHHHHHHHHHHH
Confidence 333 346789999999999999 567777775544444443
No 311
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.95 E-value=0.11 Score=55.54 Aligned_cols=121 Identities=17% Similarity=0.141 Sum_probs=72.8
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH--HHHHHHHhhcccCCCCeeee---CCHHHHHhhcCCCcEEEEEc--
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS--KVDETLDRAHREGQLPLTGH---YTPRDFVLSIQRPRSVIILV-- 80 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~--~~~~l~~~~~~~g~~~i~~~---~s~~e~v~~l~~advIil~v-- 80 (505)
.|.|||+|..|.++|+.|.+.|++|+++|..+. ..+++.+... ++... .+. +.+.. +|+||.+-
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~-----g~~~~~~~~~~-~~~~~---~d~vV~sp~i 78 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFP-----DVELRCGGFDC-ELLVQ---ASEIIISPGL 78 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcC-----CcEEEeCCCCh-HHhcC---CCEEEECCCC
Confidence 599999999999999999999999999997653 2233433110 12232 233 33344 88887643
Q ss_pred CCCch-HHHHH---------HHHHhc-CCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCH
Q 010637 81 KAGSP-VDQTI---------AALSEH-MSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 81 p~~~~-v~~vl---------~~l~~~-l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~ 137 (505)
|.+.+ +...- -+++.. +....|-|-+|++...++.-+...|...|..+.-.+..|.+
T Consensus 79 ~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p 146 (448)
T PRK03803 79 ALDTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTP 146 (448)
T ss_pred CCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHH
Confidence 33222 22111 123322 33335667777777777776777888777655544444443
No 312
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.95 E-value=0.025 Score=54.62 Aligned_cols=70 Identities=14% Similarity=0.244 Sum_probs=52.6
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChH--HHHHHHHhhcccCCCCeee-eCCHHHHHhhcCCCcEEEEEcCC
Q 010637 9 IGLAGL-AVMGQNLALNVAEKGFPISVYNRTTS--KVDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 9 IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~--~~~~l~~~~~~~g~~~i~~-~~s~~e~v~~l~~advIil~vp~ 82 (505)
|.|+|. |.+|+.++..|.+.+++|.+.-|++. ..+.+.+.+... +.. ..+.+.+.+.|+.+|.||++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~v----v~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEV----VEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEE----EES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceE----eecccCCHHHHHHHHcCCceEEeecCc
Confidence 789996 99999999999999999999999874 355555544321 111 24667777778889999999984
No 313
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=95.93 E-value=0.072 Score=56.70 Aligned_cols=99 Identities=13% Similarity=0.094 Sum_probs=63.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC-------CC--cEEEEeCChHHHHHHHHhhccc--CC-CCeeee-CCHHHHHhhcCC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEK-------GF--PISVYNRTTSKVDETLDRAHRE--GQ-LPLTGH-YTPRDFVLSIQR 72 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~-------G~--~V~v~dr~~~~~~~l~~~~~~~--g~-~~i~~~-~s~~e~v~~l~~ 72 (505)
-||+|||+ |.+|..+|..|+.. |. ++.++|++.++++...-..... .. .++.+. .+.+++.+
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kd---- 176 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQD---- 176 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCc----
Confidence 48999999 99999999999988 65 7889999998765433211100 00 024433 44444433
Q ss_pred CcEEEEEcCC----Cc-----------hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 73 PRSVIILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 73 advIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+|+||++.-. +. .++++...|.++..++.+||..||-
T Consensus 177 aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNP 228 (444)
T PLN00112 177 AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNP 228 (444)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCc
Confidence 9999998633 21 1334445555544567778888764
No 314
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.93 E-value=0.093 Score=50.16 Aligned_cols=72 Identities=10% Similarity=0.045 Sum_probs=49.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH-HHHHHHHhhcccCCCCeeee---CCHHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGH---YTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~---~s~~e~v~~l~~advIil~vp~ 82 (505)
.+|.|||.|.+|..-+..|.+.|.+|++++.+.. .+..+.+.+ ++... ....+ ++ .+++||.++.+
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~------~i~~~~~~~~~~d-l~---~~~lVi~at~d 79 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQG------GITWLARCFDADI-LE---GAFLVIAATDD 79 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcC------CEEEEeCCCCHHH-hC---CcEEEEECCCC
Confidence 5799999999999999999999999999987654 344454433 23332 13333 23 38888888665
Q ss_pred CchHHHH
Q 010637 83 GSPVDQT 89 (505)
Q Consensus 83 ~~~v~~v 89 (505)
. .+..-
T Consensus 80 ~-~ln~~ 85 (205)
T TIGR01470 80 E-ELNRR 85 (205)
T ss_pred H-HHHHH
Confidence 4 34433
No 315
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.91 E-value=0.054 Score=55.89 Aligned_cols=124 Identities=12% Similarity=0.148 Sum_probs=70.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhccc-CCC--CeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQL--PLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~--~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
..+|.|||+|.+|..+|.+|++.|. ++.++|.+.-....+..+.... ... +..-+....+.+..+ .+++-+....
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~i-np~v~v~~~~ 102 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEI-NSDVRVEAIV 102 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHH-CCCcEEEEEe
Confidence 3589999999999999999999998 8999999864433332211000 000 000011112222222 1566566654
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
.... ..-+. +.+..-|+|||++.. +.....+.+.+.+.++-++.+.+.|
T Consensus 103 ~~~~-~~~~~---~~~~~~DlVid~~Dn-~~~r~~ln~~~~~~~iP~i~~~~~g 151 (339)
T PRK07688 103 QDVT-AEELE---ELVTGVDLIIDATDN-FETRFIVNDAAQKYGIPWIYGACVG 151 (339)
T ss_pred ccCC-HHHHH---HHHcCCCEEEEcCCC-HHHHHHHHHHHHHhCCCEEEEeeee
Confidence 4321 22222 334566999999764 3444445566677788777665443
No 316
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=95.91 E-value=0.062 Score=44.87 Aligned_cols=87 Identities=13% Similarity=0.166 Sum_probs=59.6
Q ss_pred chhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhh
Q 010637 183 SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDK 262 (505)
Q Consensus 183 ~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~ 262 (505)
.+.++|++.|++.+..+++++|...++++.| +|..++.+.+. ...--+ ...+.-.-.+++. -+-+|
T Consensus 3 ~AEl~K~~~N~~~a~~iaf~Nel~~lce~~g-iD~~~V~~~~~---~d~ri~------~~~~~pg~g~GG~----ClpkD 68 (96)
T PF00984_consen 3 EAELIKYAENAFRATKIAFANELARLCEKLG-IDVYEVIEAAN---TDPRIG------PHYLRPGPGFGGS----CLPKD 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBHHHHHHHHH---TSTTTT------SSS-S-SSS--SS----CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHc---cCcccc------cccCCCCCCCCCc----chhhh
Confidence 5789999999999999999999999999998 99999999873 211000 1122111113332 33344
Q ss_pred hCCCchHHHHHHHHHHcCCCcchHHHH
Q 010637 263 TGMKGTGKWTVQQAAELSVAAPTIAAS 289 (505)
Q Consensus 263 ~~~kgtg~~~~~~A~~~gvp~p~i~~a 289 (505)
.. .....+.++|++.+++.++
T Consensus 69 ~~------~L~~~~~~~g~~~~ll~~~ 89 (96)
T PF00984_consen 69 PY------ALIYLAKELGYPPQLLEAV 89 (96)
T ss_dssp HH------HHHHHHHHTTSHHHHHHHH
T ss_pred HH------HHHHHHHHcCCCHHHHHHH
Confidence 42 5667899999998877654
No 317
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.88 E-value=0.16 Score=54.28 Aligned_cols=115 Identities=16% Similarity=0.092 Sum_probs=68.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHH----HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc--
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK----VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV-- 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~----~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v-- 80 (505)
++|.|+|.|.+|.+.|+.|++.|++|+++|++... .+.+.+.+. .+.......++... .+|+||.+.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~-----~~~~~~~~~~~~~~--~~d~vV~s~gi 78 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGI-----KVICGSHPLELLDE--DFDLMVKNPGI 78 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCC-----EEEeCCCCHHHhcC--cCCEEEECCCC
Confidence 47999999999999999999999999999987532 233333221 12222334443321 278777754
Q ss_pred CCCch-HHHHH---------HHHHhcC-CCCcEEEecCCCCchhHHHHHHHHHHCCCeE
Q 010637 81 KAGSP-VDQTI---------AALSEHM-SPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 81 p~~~~-v~~vl---------~~l~~~l-~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
|.+.. ++... .++...+ ....|-|.+|++...++.-+...|...|...
T Consensus 79 ~~~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~ 137 (447)
T PRK02472 79 PYTNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQHA 137 (447)
T ss_pred CCCCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCCe
Confidence 33322 22221 1222222 3345667777777666666777777766543
No 318
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.88 E-value=0.14 Score=55.65 Aligned_cols=116 Identities=15% Similarity=0.067 Sum_probs=69.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH--HHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS--KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~--~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~ 82 (505)
.+|.|+|+|..|.++|+.|.+.|++|+++|.... ..+.+.+.+... .+.......+.++. +|+||.. +|.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~---~~~~g~~~~~~~~~---~d~vv~sp~I~~ 81 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDA---EFVGGPFDPALLDG---VDLVALSPGLSP 81 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCc---EEEeCCCchhHhcC---CCEEEECCCCCC
Confidence 4799999999999999999999999999997542 233444332110 12222222344444 8988886 444
Q ss_pred C-----chHHHH-------------HHHHHhcC-----CCCcEEEecCCCCchhHHHHHHHHHHCCCeE
Q 010637 83 G-----SPVDQT-------------IAALSEHM-----SPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 83 ~-----~~v~~v-------------l~~l~~~l-----~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
. ..+... +..+...+ .+..|-|-+||+.-.++.-+...|...|...
T Consensus 82 ~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~ 150 (498)
T PRK02006 82 LEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKV 150 (498)
T ss_pred cccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCE
Confidence 2 111111 11222111 1235667778887777777777888777644
No 319
>PRK07454 short chain dehydrogenase; Provisional
Probab=95.87 E-value=0.051 Score=52.48 Aligned_cols=47 Identities=19% Similarity=0.390 Sum_probs=38.6
Q ss_pred CCcCCCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 1 MEASALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 1 m~~~~~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
|....++++-|.|. |.+|..++..|+++|++|.+.+|++++.+.+.+
T Consensus 1 ~~~~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (241)
T PRK07454 1 MSLNSMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAA 48 (241)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 55555567888875 999999999999999999999999887665543
No 320
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.85 E-value=0.028 Score=54.04 Aligned_cols=121 Identities=13% Similarity=0.173 Sum_probs=63.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..+|.|||+|.+|..+|.+|++.|.. ++++|.+.=....+..........+-.-+....+-++.+ .+++-+..++..
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~l-np~v~v~~~~~~- 105 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEI-NPFVEIEAHNEK- 105 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHH-CCCCEEEEEeee-
Confidence 35799999999999999999999985 999998842222221110000000000011111112211 145555555432
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC-CCeEEeCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK-GLLYLGMG 132 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~-gi~~i~~p 132 (505)
.....+++ .+..-++|||++-. +.....+.+.+.++ ++.++.+.
T Consensus 106 i~~~~~~~---~~~~~DvVI~a~D~-~~~r~~l~~~~~~~~~~p~I~~~ 150 (212)
T PRK08644 106 IDEDNIEE---LFKDCDIVVEAFDN-AETKAMLVETVLEHPGKKLVAAS 150 (212)
T ss_pred cCHHHHHH---HHcCCCEEEECCCC-HHHHHHHHHHHHHhCCCCEEEee
Confidence 11222222 34456899999543 33334455666666 77777653
No 321
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=95.83 E-value=0.06 Score=54.35 Aligned_cols=104 Identities=13% Similarity=0.181 Sum_probs=78.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHH
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~ 405 (505)
+.++.+|.++|.+..+.+++++|++.+-++. ++|.+++.++.+.| -.+|++++.....+.+. +. ++.
T Consensus 163 G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~------Gld~~~~~~~l~~~-~~~s~~~~~~~~~~~~~-~~-----~~~ 229 (292)
T PRK15059 163 GDGQTCKVANQIIVALNIEAVSEALLFASKA------GADPVRVRQALMGG-FASSRILEVHGERMIKR-TF-----NPG 229 (292)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHcC-cccCHHHHhhchhhhcC-CC-----CCC
Confidence 5778999999999999999999999887753 39999999999877 46788777554333222 11 122
Q ss_pred HHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 010637 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTY 444 (505)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~~ 444 (505)
|. +.-...+++-++..|-+.|+|+|...++..+|+..
T Consensus 230 f~--l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a 266 (292)
T PRK15059 230 FK--IALHQKDLNLALQSAKALALNLPNTATCQELFNTC 266 (292)
T ss_pred Cc--hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 32 23345677899999999999999999888877653
No 322
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=95.79 E-value=0.032 Score=51.07 Aligned_cols=75 Identities=19% Similarity=0.387 Sum_probs=51.0
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG-~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||-+ .+|.+++..|.++|..|++++... .++++.++. +|+||.++.....
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T---------------------~~l~~~~~~---ADIVVsa~G~~~~ 92 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT---------------------KNLQEITRR---ADIVVSAVGKPNL 92 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS---------------------SSHHHHHTT---SSEEEE-SSSTT-
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC---------------------Ccccceeee---ccEEeeeeccccc
Confidence 579999986 699999999999999999987553 244555555 9999999977543
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCc
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~ 111 (505)
++ ...+++|.+|||++....
T Consensus 93 i~------~~~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 93 IK------ADWIKPGAVVIDVGINYV 112 (160)
T ss_dssp B-------GGGS-TTEEEEE--CEEE
T ss_pred cc------cccccCCcEEEecCCccc
Confidence 22 235789999999988654
No 323
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.78 E-value=0.047 Score=55.95 Aligned_cols=99 Identities=14% Similarity=0.159 Sum_probs=58.5
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCCh--HHHHHHHHhhccc--CCC-CeeeeCCHHHHHhhcCCCc
Q 010637 8 RIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTT--SKVDETLDRAHRE--GQL-PLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 8 ~IgIIGl-G~MG~~lA~~La~~G~-------~V~v~dr~~--~~~~~l~~~~~~~--g~~-~i~~~~s~~e~v~~l~~ad 74 (505)
||+|||+ |.+|..+|..|+..|. ++.++|+++ ++++.......+. ... +.....+..+.++. +|
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~---aD 78 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD---VD 78 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC---CC
Confidence 7999999 9999999999998663 599999987 5432211100000 000 12232344444444 99
Q ss_pred EEEEEcCC----Cch-----------HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 75 SVIILVKA----GSP-----------VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 75 vIil~vp~----~~~-----------v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+||++--. +.. ++++...+.++..++.++|-.||-
T Consensus 79 iVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNP 128 (323)
T cd00704 79 VAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNP 128 (323)
T ss_pred EEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 99997622 222 344445666654466667667653
No 324
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.77 E-value=0.11 Score=56.07 Aligned_cols=111 Identities=17% Similarity=0.101 Sum_probs=66.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH-HH----HHHHHhhcccCCCCeeee--CCHHHHHhhcCCCcEEEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-KV----DETLDRAHREGQLPLTGH--YTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~-~~----~~l~~~~~~~g~~~i~~~--~s~~e~v~~l~~advIil~ 79 (505)
.+|.|||.|..|..+|..|++.|++|+++|+++. .. +.+.+.+ +... .... .. ..+|+||++
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~g-------v~~~~~~~~~-~~---~~~D~Vv~s 85 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALG-------ATVRLGPGPT-LP---EDTDLVVTS 85 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcC-------CEEEECCCcc-cc---CCCCEEEEC
Confidence 4799999999999999999999999999996643 22 2233322 3222 2222 22 238999887
Q ss_pred c---CCCchHHHHH---------HHHH-hcCCC----CcEEEecCCCCchhHHHHHHHHHHCCCeE
Q 010637 80 V---KAGSPVDQTI---------AALS-EHMSP----GDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 80 v---p~~~~v~~vl---------~~l~-~~l~~----g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
. |....+...- -+++ ..+.+ ..|-|.+|++...++.-+...+...|...
T Consensus 86 ~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~ 151 (480)
T PRK01438 86 PGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRA 151 (480)
T ss_pred CCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCe
Confidence 6 2222111111 1222 22222 23667777777666666777777766543
No 325
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.68 E-value=0.046 Score=54.65 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=56.7
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG-~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|||-| .+|.++|..|.++|..|++++... .++.+.++. +|+||.++....-
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t---------------------~~l~~~~~~---ADIvV~AvG~p~~ 213 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT---------------------KDLSFYTQN---ADIVCVGVGKPDL 213 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc---------------------HHHHHHHHh---CCEEEEecCCCCc
Confidence 579999998 999999999999999999985332 133445555 9999999977543
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+. . ..+++|.+|||.+...
T Consensus 214 i~---~---~~vk~GavVIDvGi~~ 232 (285)
T PRK14191 214 IK---A---SMVKKGAVVVDIGINR 232 (285)
T ss_pred CC---H---HHcCCCcEEEEeeccc
Confidence 22 1 2468999999998754
No 326
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=95.67 E-value=0.065 Score=54.31 Aligned_cols=98 Identities=17% Similarity=0.209 Sum_probs=59.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHh----hcccCCCCeeeeC--CHHHHHhhcCCCcEEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDR----AHREGQLPLTGHY--TPRDFVLSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~----~~~~g~~~i~~~~--s~~e~v~~l~~advIil 78 (505)
+||+|||+|.+|.++|..|...+. ++.++|++.++++-.... ....+ ....... +.+++ +.+|+|++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~-~~~~i~~~~~y~~~----~~aDiVvi 75 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLG-SDVKITGDGDYEDL----KGADIVVI 75 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhcc-CceEEecCCChhhh----cCCCEEEE
Confidence 489999999999999999987764 799999996554322211 10000 0223333 34443 33999999
Q ss_pred Ec----CCCc-----------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 79 LV----KAGS-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 79 ~v----p~~~-----------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+. +++. .++++..++.... ++.+++-.||-.
T Consensus 76 tAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~-~d~ivlVvtNPv 121 (313)
T COG0039 76 TAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYA-PDAIVLVVTNPV 121 (313)
T ss_pred eCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCeEEEEecCcH
Confidence 87 2222 2333445555554 466777777643
No 327
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=95.64 E-value=0.12 Score=50.84 Aligned_cols=108 Identities=16% Similarity=0.195 Sum_probs=67.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCC-CcE-EEEeCChHHH-----HHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKG-FPI-SVYNRTTSKV-----DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G-~~V-~v~dr~~~~~-----~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi 77 (505)
++||+|+|+ |.||+.+.+.+.+.. +++ ..++|.+... .++...+ .+++.+.+++...... +|++|
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~----~~gv~v~~~~~~~~~~---~DV~I 74 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLG----LLGVPVTDDLLLVKAD---ADVLI 74 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhcccc----ccCceeecchhhcccC---CCEEE
Confidence 579999998 999999999999875 554 4678876532 1221111 1235555665544444 99999
Q ss_pred EEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC
Q 010637 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~ 124 (505)
=...+. .....++-. +..+..+|-+||+......+..+.+.++
T Consensus 75 DFT~P~-~~~~~l~~~---~~~~~~lVIGTTGf~~e~~~~l~~~a~~ 117 (266)
T COG0289 75 DFTTPE-ATLENLEFA---LEHGKPLVIGTTGFTEEQLEKLREAAEK 117 (266)
T ss_pred ECCCch-hhHHHHHHH---HHcCCCeEEECCCCCHHHHHHHHHHHhh
Confidence 776553 444444433 3355666667788776666655555554
No 328
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.62 E-value=0.071 Score=53.28 Aligned_cols=109 Identities=13% Similarity=0.108 Sum_probs=72.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|+|+|-.+++++..|++.|. +|+++||++++.+.+.+... .... .++ . ...+|+||-++|.+..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~------~~~~---~~~-~-~~~~dlvINaTp~Gm~ 191 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYG------YEWR---PDL-G-GIEADILVNVTPIGMA 191 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhC------Ccch---hhc-c-cccCCEEEECCccccC
Confidence 369999999999999999999997 59999999999988876421 1111 111 1 1238999999987632
Q ss_pred --HHH---HHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 86 --VDQ---TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 86 --v~~---vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
.+. -++ ...++++.+++|.--.. ..| .+.+..+++|...++
T Consensus 192 ~~~~~~~~pi~--~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~i~ 237 (272)
T PRK12550 192 GGPEADKLAFP--EAEIDAASVVFDVVALP-AET-PLIRYARARGKTVIT 237 (272)
T ss_pred CCCccccCCCC--HHHcCCCCEEEEeecCC-ccC-HHHHHHHHCcCeEeC
Confidence 000 011 12367788999986544 333 455556677765543
No 329
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=95.56 E-value=0.14 Score=54.49 Aligned_cols=121 Identities=20% Similarity=0.153 Sum_probs=72.3
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHH-HHH---HHHhhcccCCCCeeee--CCHHHHHhhcCCCcEEEEEc-
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK-VDE---TLDRAHREGQLPLTGH--YTPRDFVLSIQRPRSVIILV- 80 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~-~~~---l~~~~~~~g~~~i~~~--~s~~e~v~~l~~advIil~v- 80 (505)
+|.|||+|..|.++|+.|.+.|++|+++|..+.. ... +.+.. . ++... .+ .+.+. .+|+||.+-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~--~---gi~~~~g~~-~~~~~---~~d~vv~sp~ 71 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLN--E---GSVLHTGLH-LEDLN---NADLVVKSPG 71 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhc--c---CcEEEecCc-hHHhc---cCCEEEECCC
Confidence 5899999999999999999999999999976542 211 22110 0 13322 23 23333 389887754
Q ss_pred -CCCch-HHHHH---------HHHH-hcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCH
Q 010637 81 -KAGSP-VDQTI---------AALS-EHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 81 -p~~~~-v~~vl---------~~l~-~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~ 137 (505)
|.+.+ +...- .+++ ..+....|-|.+|++...++.-+...|...|..+.-.+-.|.+
T Consensus 72 i~~~~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~~ 140 (433)
T TIGR01087 72 IPPDHPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGTP 140 (433)
T ss_pred CCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCHH
Confidence 33322 22211 1222 2233345667777887777777778888877665444444433
No 330
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=95.55 E-value=0.13 Score=53.96 Aligned_cols=100 Identities=14% Similarity=0.164 Sum_probs=60.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC-----cEE--EE--eCChHHHHHHHHhhccc--CCC-Ceeee-CCHHHHHhhcCC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGF-----PIS--VY--NRTTSKVDETLDRAHRE--GQL-PLTGH-YTPRDFVLSIQR 72 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~-----~V~--v~--dr~~~~~~~l~~~~~~~--g~~-~i~~~-~s~~e~v~~l~~ 72 (505)
-||+|||+ |.+|.++|..|+..|. +|. ++ |++.++++...-..... ..+ ++.+. .+.+++ ++
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~-kd--- 120 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVF-ED--- 120 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHh-CC---
Confidence 48999999 9999999999998774 234 44 88887765433211100 000 23433 344443 33
Q ss_pred CcEEEEEcCC----Cch-----------HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 73 PRSVIILVKA----GSP-----------VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 73 advIil~vp~----~~~-----------v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+|+||++.-. +.. ++++...|.++..++.+||-.||-.
T Consensus 121 aDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPv 173 (387)
T TIGR01757 121 ADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPC 173 (387)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcH
Confidence 9999997522 211 3344456666555777888887643
No 331
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.53 E-value=0.21 Score=49.19 Aligned_cols=117 Identities=15% Similarity=0.093 Sum_probs=71.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEE-EEeC----------ChHHHHHHHHhhcccCC--------C-CeeeeCCHHHH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPIS-VYNR----------TTSKVDETLDRAHREGQ--------L-PLTGHYTPRDF 66 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~-v~dr----------~~~~~~~l~~~~~~~g~--------~-~i~~~~s~~e~ 66 (505)
.+|.|.|.|++|...|+.|.+.|.+|. +.|. +.+.+..+.+.....+. . +.+.. +.+++
T Consensus 39 ~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~-~~~~~ 117 (254)
T cd05313 39 KRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF-EGKKP 117 (254)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe-CCcch
Confidence 589999999999999999999999988 5562 23334332211100000 0 01222 44444
Q ss_pred HhhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 67 v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
... .||+++-|--.+..-.+.+..|.. .+=++|+...|... |.+..+.|.++|+.++.
T Consensus 118 ~~~--~~DIliPcAl~~~I~~~na~~i~~--~~ak~I~EgAN~p~--t~~a~~~L~~rGI~vvP 175 (254)
T cd05313 118 WEV--PCDIAFPCATQNEVDAEDAKLLVK--NGCKYVAEGANMPC--TAEAIEVFRQAGVLFAP 175 (254)
T ss_pred hcC--CCcEEEeccccccCCHHHHHHHHH--cCCEEEEeCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 432 489888776554333333344432 13468888888764 33677889999998874
No 332
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.50 E-value=0.049 Score=51.75 Aligned_cols=123 Identities=15% Similarity=0.196 Sum_probs=70.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhccc-CCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|.+|..++++|+..|. +++++|.+.=....+....... ...+-.-+....+.++.+ .|++-+.+.+..
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~l-Np~v~i~~~~~~ 99 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRAL-NPRVKVSVDTDD 99 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHH-CCCCEEEEEecC
Confidence 3589999999999999999999997 5889987743222222110000 000000011122222222 267766665442
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
+.+...++ +..=++||+++. .+.....+.+.+.++++.|+.+.+.|
T Consensus 100 --~~~~~~~~---~~~~dvVi~~~~-~~~~~~~ln~~c~~~~ip~i~~~~~G 145 (197)
T cd01492 100 --ISEKPEEF---FSQFDVVVATEL-SRAELVKINELCRKLGVKFYATGVHG 145 (197)
T ss_pred --ccccHHHH---HhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 22212222 334478988754 34555556777888898888877655
No 333
>PRK05884 short chain dehydrogenase; Provisional
Probab=95.46 E-value=0.31 Score=46.79 Aligned_cols=42 Identities=10% Similarity=0.240 Sum_probs=36.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHh
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR 48 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~ 48 (505)
||+-|.|. |.+|..+++.|++.|++|.+.+|++++.+.+.+.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~ 43 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKE 43 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh
Confidence 36888876 8999999999999999999999999887776543
No 334
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=95.46 E-value=0.041 Score=55.95 Aligned_cols=82 Identities=12% Similarity=0.217 Sum_probs=54.0
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 5 ALSRIGLAGL-AVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 5 ~~~~IgIIGl-G~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+++|+|||+ |..|..|.+.|.++.+ ++.....+..+ .+ .+.++..+. +|++|+++|.
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~--------------~~---~~~~~~~~~---~DvvFlalp~ 60 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK--------------DA---AARRELLNA---ADVAILCLPD 60 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC--------------cc---cCchhhhcC---CCEEEECCCH
Confidence 4579999995 9999999999998863 33322222111 01 122233344 8999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+ ...+.+.++. ..|..|||.|..+
T Consensus 61 ~-~s~~~~~~~~---~~g~~VIDlSadf 84 (313)
T PRK11863 61 D-AAREAVALID---NPATRVIDASTAH 84 (313)
T ss_pred H-HHHHHHHHHH---hCCCEEEECChhh
Confidence 7 4454555543 4688999998754
No 335
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=95.46 E-value=0.11 Score=52.24 Aligned_cols=104 Identities=14% Similarity=0.202 Sum_probs=76.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHH
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~ 405 (505)
..++.+|.++|.+.++.+..++|++.+.++. ++|.+++.++|+.+ ..+|.+++.....+.+. +. ++.
T Consensus 166 g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~------Gi~~~~~~~~l~~~-~~~s~~~~~~~~~~~~~-d~-----~~~ 232 (296)
T PRK11559 166 GAGNVTKLANQVIVALNIAAMSEALVLATKA------GVNPDLVYQAIRGG-LAGSTVLDAKAPMVMDR-NF-----KPG 232 (296)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcC-cccCHHHHhhchHhhcC-CC-----CCC
Confidence 4678899999999999999999999998753 39999999999976 55677666543322221 11 112
Q ss_pred HHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 010637 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTY 444 (505)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~~ 444 (505)
|. +.-....++-++..|-+.|+|+|.+.++...|+..
T Consensus 233 f~--~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~ 269 (296)
T PRK11559 233 FR--IDLHIKDLANALDTSHGVGAPLPLTAAVMEMMQAL 269 (296)
T ss_pred cc--hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 22 22334556888899999999999999999977653
No 336
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.45 E-value=0.088 Score=53.99 Aligned_cols=97 Identities=13% Similarity=0.124 Sum_probs=58.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCC-------CcEEEEeCChH--HHHHH----HHhh-cccCCCCeeeeCCHHHHHhhcC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKG-------FPISVYNRTTS--KVDET----LDRA-HREGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G-------~~V~v~dr~~~--~~~~l----~~~~-~~~g~~~i~~~~s~~e~v~~l~ 71 (505)
.||+|+|+ |.+|..++..|+..+ .+|.++|+++. +.+.. .... ...+ ++....++.+.++.
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~--~~~~~~~~~~~l~~-- 78 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLK--SVVATTDPEEAFKD-- 78 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccC--CceecCCHHHHhCC--
Confidence 47999999 999999999999854 58999999653 22211 1000 0000 22333454444444
Q ss_pred CCcEEEEEcCC----Cc-----------hHHHHHHHHHhcCCCCcEEEecCC
Q 010637 72 RPRSVIILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 72 ~advIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st 108 (505)
+|+||++.-. +. .++++...+.++..++.++|-.||
T Consensus 79 -aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 79 -VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred -CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 9999988622 21 123334556666556777777776
No 337
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.41 E-value=0.051 Score=54.39 Aligned_cols=73 Identities=15% Similarity=0.254 Sum_probs=56.3
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~-MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|||-+. +|.++|..|..+|..|++++... .++++.+.. +|+||.++.-...
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T---------------------~~l~~~~~~---ADIvv~AvG~p~~ 220 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT---------------------DDLKKYTLD---ADILVVATGVKHL 220 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC---------------------CCHHHHHhh---CCEEEEccCCccc
Confidence 5799999988 99999999999999999998421 245555565 9999998865433
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+. ...+++|.+|||.+..
T Consensus 221 i~------~~~vk~gavVIDvGin 238 (287)
T PRK14176 221 IK------ADMVKEGAVIFDVGIT 238 (287)
T ss_pred cC------HHHcCCCcEEEEeccc
Confidence 22 1257899999999875
No 338
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=95.37 E-value=0.046 Score=56.46 Aligned_cols=91 Identities=14% Similarity=0.244 Sum_probs=57.2
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCCc---EEEE--eCChHHHHHHHHhhcccCCCCeeeeC-CHHHHHhhcCCCcEEE
Q 010637 5 ALSRIGLAGL-AVMGQNLALNVAEKGFP---ISVY--NRTTSKVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVI 77 (505)
Q Consensus 5 ~~~~IgIIGl-G~MG~~lA~~La~~G~~---V~v~--dr~~~~~~~l~~~~~~~g~~~i~~~~-s~~e~v~~l~~advIi 77 (505)
..+||+|||+ |..|..|.+.|.+++|+ +... .|+..+.-.+ .+ . .+.... +.+++ +. +|+||
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~--~~-~----~~~v~~~~~~~~-~~---~D~vf 74 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF--EG-R----DYTVEELTEDSF-DG---VDIAL 74 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee--cC-c----eeEEEeCCHHHH-cC---CCEEE
Confidence 3468999996 99999999999998884 3222 3333322111 11 1 122222 33333 44 99999
Q ss_pred EEcCCCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+++|.+ ........+. ..|..|||.|..+
T Consensus 75 ~a~p~~-~s~~~~~~~~---~~g~~VIDlS~~f 103 (344)
T PLN02383 75 FSAGGS-ISKKFGPIAV---DKGAVVVDNSSAF 103 (344)
T ss_pred ECCCcH-HHHHHHHHHH---hCCCEEEECCchh
Confidence 999997 4455544432 4689999998754
No 339
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.34 E-value=0.27 Score=52.60 Aligned_cols=115 Identities=14% Similarity=0.027 Sum_probs=69.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHH--HHHHHHhhcccCCCCeeee--CCHHHHHhhcCCCcEEEEEc-
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK--VDETLDRAHREGQLPLTGH--YTPRDFVLSIQRPRSVIILV- 80 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~--~~~l~~~~~~~g~~~i~~~--~s~~e~v~~l~~advIil~v- 80 (505)
.++|.|+|.|..|.+.|+.|++.|++|+++|.++.. .+++.+.. . ++... ...++.... +|+||.+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~--~---gi~~~~g~~~~~~~~~---~d~vv~spg 76 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMF--D---GLVFYTGRLKDALDNG---FDILALSPG 76 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhcc--C---CcEEEeCCCCHHHHhC---CCEEEECCC
Confidence 357999999999999999999999999999976542 33333211 0 13221 212333333 89988864
Q ss_pred -CCC-chHHHHH---------HHHH-hcCC---CCcEEEecCCCCchhHHHHHHHHHHCCCeE
Q 010637 81 -KAG-SPVDQTI---------AALS-EHMS---PGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 81 -p~~-~~v~~vl---------~~l~-~~l~---~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
|++ ..+.... -+++ ..+. ...|-|.+|++...++.-+...|...|...
T Consensus 77 i~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~ 139 (445)
T PRK04308 77 ISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDT 139 (445)
T ss_pred CCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCe
Confidence 322 2222221 1222 2221 235667777777777776777888777653
No 340
>PRK10537 voltage-gated potassium channel; Provisional
Probab=95.33 E-value=0.22 Score=52.39 Aligned_cols=112 Identities=12% Similarity=0.148 Sum_probs=69.3
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEEcCCCch
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGSP 85 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~~~ 85 (505)
.|-|+|.|.+|..++..|.+.|++|.+.+.+. .++..+.+.. -+.+..+-++..+ .+++|+.|+++.+++..
T Consensus 242 HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~--~~~~~~~g~~----vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~ 315 (393)
T PRK10537 242 HFIICGHSPLAINTYLGLRQRGQAVTVIVPLG--LEHRLPDDAD----LIPGDSSDSAVLKKAGAARARAILALRDNDAD 315 (393)
T ss_pred eEEEECCChHHHHHHHHHHHCCCCEEEEECch--hhhhccCCCc----EEEeCCCCHHHHHhcCcccCCEEEEcCCChHH
Confidence 48899999999999999999999999998763 2333322211 1333334444443 45679999988887644
Q ss_pred HHHHHHHHHhcCCC-CcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 86 VDQTIAALSEHMSP-GDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 86 v~~vl~~l~~~l~~-g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
...++.... .+.+ ..+|+-..+. +..+.+++.|...+=.|
T Consensus 316 Nl~ivL~ar-~l~p~~kIIa~v~~~------~~~~~L~~~GaD~VIsp 356 (393)
T PRK10537 316 NAFVVLAAK-EMSSDVKTVAAVNDS------KNLEKIKRVHPDMIFSP 356 (393)
T ss_pred HHHHHHHHH-HhCCCCcEEEEECCH------HHHHHHHhcCCCEEECH
Confidence 333333333 3434 4666655442 33455566788765554
No 341
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=95.33 E-value=0.19 Score=53.84 Aligned_cols=108 Identities=14% Similarity=0.144 Sum_probs=67.6
Q ss_pred cEEEEcccHHHHH-HHHHHHhCCCcEEEEeCChHH-HHHHHHhhcccCCCCeeee--CCHHHHHhhcCCCcEEEEEc--C
Q 010637 8 RIGLAGLAVMGQN-LALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGH--YTPRDFVLSIQRPRSVIILV--K 81 (505)
Q Consensus 8 ~IgIIGlG~MG~~-lA~~La~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~i~~~--~s~~e~v~~l~~advIil~v--p 81 (505)
+|-|||.|..|.+ +|+.|.+.|++|+++|.+... .+.+.+.+ +... .+. +.++ .+|+||.+- |
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~g-------i~~~~g~~~-~~~~---~~d~vV~spgi~ 69 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALG-------IPIYIGHSA-ENLD---DADVVVVSAAIK 69 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCc-------CEEeCCCCH-HHCC---CCCEEEECCCCC
Confidence 4789999999998 999999999999999976542 23343322 3332 232 2233 389888753 3
Q ss_pred CCc-hHHHHH---------HHHH-hcC-CCCcEEEecCCCCchhHHHHHHHHHHCCC
Q 010637 82 AGS-PVDQTI---------AALS-EHM-SPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 82 ~~~-~v~~vl---------~~l~-~~l-~~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (505)
.+. .+.... -+++ ..+ .+..|-|.+|++...++.-+...++..|.
T Consensus 70 ~~~p~~~~a~~~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 126 (448)
T TIGR01082 70 DDNPEIVEAKERGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGL 126 (448)
T ss_pred CCCHHHHHHHHcCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 322 222221 1222 222 23357777888887777777788888775
No 342
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.33 E-value=0.061 Score=52.72 Aligned_cols=124 Identities=14% Similarity=0.158 Sum_probs=71.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhccc-CCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|+|+|.+|..+|.+|++.|. +++++|.+.-....+..+.... ...+-.-+....+.+..+ .+++-+..++..
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~i-np~v~i~~~~~~ 102 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQI-NPHIAINPINAK 102 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHH-CCCcEEEEEecc
Confidence 3579999999999999999999996 6888888864433333211000 000000011112222221 266666666543
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
-. .. .+...+..-|+|||++-.. .....+.+.+.+.++-|+.+.+.|
T Consensus 103 i~-~~---~~~~~~~~~DlVvd~~D~~-~~r~~ln~~~~~~~ip~v~~~~~g 149 (240)
T TIGR02355 103 LD-DA---ELAALIAEHDIVVDCTDNV-EVRNQLNRQCFAAKVPLVSGAAIR 149 (240)
T ss_pred CC-HH---HHHHHhhcCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEEEEecc
Confidence 11 11 2223345668999987653 444445667778888888765554
No 343
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.33 E-value=0.095 Score=46.96 Aligned_cols=74 Identities=16% Similarity=0.235 Sum_probs=50.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|+|- ...|.+++..|.+.|..|++++++. .++++.++. +|+|+.++.....
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t---------------------~~l~~~v~~---ADIVvsAtg~~~~ 84 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT---------------------IQLQSKVHD---ADVVVVGSPKPEK 84 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC---------------------cCHHHHHhh---CCEEEEecCCCCc
Confidence 35667764 5667777777777777776666432 155666666 9999999987632
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
++ ...+++|.+|+|.+...
T Consensus 85 i~------~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 85 VP------TEWIKPGATVINCSPTK 103 (140)
T ss_pred cC------HHHcCCCCEEEEcCCCc
Confidence 22 23478999999988765
No 344
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.28 E-value=0.18 Score=48.96 Aligned_cols=124 Identities=13% Similarity=0.130 Sum_probs=69.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|.+|..+|.+|+..|. +++++|.+.=....+..+... ....+-.-+....+-+..+ .+++-+..++..
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~~~i~~~~~~ 99 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAI-NPDVEIEAYNER 99 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHh-CCCCEEEEecce
Confidence 3589999999999999999999997 788888775332222211000 0000000011122222222 155555555543
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
-. .+ .+.+.+..-++||++.-. +..-..+.+.+.+.++.|+.+++.|
T Consensus 100 i~-~~---~~~~~~~~~DvVi~~~d~-~~~r~~l~~~~~~~~ip~i~~g~~g 146 (228)
T cd00757 100 LD-AE---NAEELIAGYDLVLDCTDN-FATRYLINDACVKLGKPLVSGAVLG 146 (228)
T ss_pred eC-HH---HHHHHHhCCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 11 11 222234456899988664 4444446667777888888877655
No 345
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=95.28 E-value=0.052 Score=51.09 Aligned_cols=91 Identities=18% Similarity=0.086 Sum_probs=60.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCC----HHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYT----PRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s----~~e~v~~l~~advIil~vp 81 (505)
++|.|||- ..+|.+||..|.++|..|+++|.+.-.. +........ .-+...+ +.+.+.+ +|+||.+++
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~~h--s~t~~~~~~~~l~~~~~~---ADIVIsAvG 135 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--FTRGESIRH--EKHHVTDEEAMTLDCLSQ---SDVVITGVP 135 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--ccccccccc--ccccccchhhHHHHHhhh---CCEEEEccC
Confidence 57999996 6789999999999999999998664322 111000000 0010012 4455555 999999998
Q ss_pred CCch-HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 82 AGSP-VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 82 ~~~~-v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
.... +. ...+++|.+|||.+...
T Consensus 136 ~~~~~i~------~d~ik~GavVIDVGi~~ 159 (197)
T cd01079 136 SPNYKVP------TELLKDGAICINFASIK 159 (197)
T ss_pred CCCCccC------HHHcCCCcEEEEcCCCc
Confidence 8643 22 13477999999998764
No 346
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.26 E-value=0.074 Score=55.13 Aligned_cols=97 Identities=9% Similarity=0.170 Sum_probs=59.7
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHh-hcc------cC-CCCeee-eCCHHHHHhhcCCCc
Q 010637 6 LSRIGLAG-LAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDR-AHR------EG-QLPLTG-HYTPRDFVLSIQRPR 74 (505)
Q Consensus 6 ~~~IgIIG-lG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~-~~~------~g-~~~i~~-~~s~~e~v~~l~~ad 74 (505)
++||+|+| .|.+|..+.+.|.++.. ++..+.++++...+.... ... .+ ...+.+ ..+++++ .. +|
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~---~D 78 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV-DD---VD 78 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHh-cC---CC
Confidence 47999998 79999999999998754 788775665443221110 000 00 001122 2244443 43 99
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+|+.++|.+ ....+++.+. ..|..+||.|...
T Consensus 79 vVf~a~p~~-~s~~~~~~~~---~~G~~vIDls~~f 110 (349)
T PRK08664 79 IVFSALPSD-VAGEVEEEFA---KAGKPVFSNASAH 110 (349)
T ss_pred EEEEeCChh-HHHHHHHHHH---HCCCEEEECCchh
Confidence 999999996 3444444443 3678899998754
No 347
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.26 E-value=0.11 Score=49.76 Aligned_cols=84 Identities=15% Similarity=0.239 Sum_probs=54.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--EcCCC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAG 83 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~~ 83 (505)
++|-|.|. |.+|..++..|+++|++|.+.+|++++.+.+...... . . +++.++ =+.+.
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~--------------~--~---~~~~~~~~D~~~~ 66 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRA--------------A--G---GEARVLVFDVSDE 66 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHh--------------c--C---CceEEEEccCCCH
Confidence 57889985 9999999999999999999999998876554432110 0 0 222222 22333
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
..++++++++...+.+=+.||++...
T Consensus 67 ~~~~~~~~~~~~~~~~id~vi~~ag~ 92 (246)
T PRK05653 67 AAVRALIEAAVEAFGALDILVNNAGI 92 (246)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 34566666665544445677776543
No 348
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.24 E-value=0.044 Score=56.21 Aligned_cols=35 Identities=14% Similarity=0.336 Sum_probs=31.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTS 40 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~ 40 (505)
..+|-|||+|.||...+++|.++|. +|++.||+..
T Consensus 174 ~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~ 209 (338)
T PRK00676 174 KASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQL 209 (338)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 3579999999999999999999995 6999999975
No 349
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.23 E-value=0.064 Score=53.54 Aligned_cols=74 Identities=15% Similarity=0.215 Sum_probs=56.9
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG-~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||-+ .+|.++|..|.++|..|+++.... .++++.+.. +|+||.++.-..-
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T---------------------~~l~~~~~~---ADIvV~AvGkp~~ 213 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNANATVDICHIFT---------------------KDLKAHTKK---ADIVIVGVGKPNL 213 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------cCHHHHHhh---CCEEEEecCcccc
Confidence 479999987 999999999999999999885321 245556666 9999999976543
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 214 i~------~~~vk~gavvIDvGin~ 232 (281)
T PRK14183 214 IT------EDMVKEGAIVIDIGINR 232 (281)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 22 13478999999998764
No 350
>PRK08223 hypothetical protein; Validated
Probab=95.23 E-value=0.081 Score=53.03 Aligned_cols=125 Identities=19% Similarity=0.189 Sum_probs=70.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|-+|..++.+|+..|. ++.++|.+.=....+..+... ....+-.-+...++.+..+. +++=|.+.+..
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iN-P~v~V~~~~~~ 105 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDIN-PELEIRAFPEG 105 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHC-CCCEEEEEecc
Confidence 3589999999999999999999996 688888775433333222100 00000011112222333221 44445555432
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCc-hhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWY-LNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~-~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
-. .+-++++ +..-|+|||++.... .....+.+.+...++-++.+.+.|
T Consensus 106 l~-~~n~~~l---l~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g 154 (287)
T PRK08223 106 IG-KENADAF---LDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLG 154 (287)
T ss_pred cC-ccCHHHH---HhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 11 1122333 345589999876542 333445567778888888775554
No 351
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=95.22 E-value=0.079 Score=52.79 Aligned_cols=68 Identities=13% Similarity=0.150 Sum_probs=46.3
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCee-eeCCHHHHHhhc------CC-CcEEEE
Q 010637 8 RIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLT-GHYTPRDFVLSI------QR-PRSVII 78 (505)
Q Consensus 8 ~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~-~~~s~~e~v~~l------~~-advIil 78 (505)
+|.|+|. |.+|+.++..|.+.|++|.+..|++++... .+.. .+. -..+++.+...+ +. +|.|++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~---~~~~----~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~ 73 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAG---PNEK----HVKFDWLDEDTWDNPFSSDDGMEPEISAVYL 73 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccC---CCCc----cccccCCCHHHHHHHHhcccCcCCceeEEEE
Confidence 4788986 999999999999999999999999875421 1100 011 123444443333 45 799988
Q ss_pred EcCC
Q 010637 79 LVKA 82 (505)
Q Consensus 79 ~vp~ 82 (505)
+.|.
T Consensus 74 ~~~~ 77 (285)
T TIGR03649 74 VAPP 77 (285)
T ss_pred eCCC
Confidence 8765
No 352
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=95.21 E-value=0.14 Score=56.13 Aligned_cols=113 Identities=19% Similarity=0.186 Sum_probs=71.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.++-|+|.|-+|++++..|++.|.+|.++||+.++.+.+.+.... ......+..+... ..+|+|+-++|.+..-
T Consensus 380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~----~~~~~~~~~~~~~--~~~diiINtT~vGm~~ 453 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGG----QALTLADLENFHP--EEGMILANTTSVGMQP 453 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCC----ceeeHhHhhhhcc--ccCeEEEecccCCCCC
Confidence 468899999999999999999999999999999998888764311 1222222222111 1267888777766321
Q ss_pred --HH-HHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE
Q 010637 87 --DQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 87 --~~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (505)
+. -+. ...+++..+++|..-... .| .+.+..+++|...+
T Consensus 454 ~~~~~pl~--~~~l~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~~ 495 (529)
T PLN02520 454 NVDETPIS--KHALKHYSLVFDAVYTPK-IT-RLLREAEESGAIIV 495 (529)
T ss_pred CCCCCccc--HhhCCCCCEEEEeccCCC-cC-HHHHHHHHCCCeEe
Confidence 10 011 123667789999866543 33 44455566665443
No 353
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=95.19 E-value=0.1 Score=51.69 Aligned_cols=89 Identities=15% Similarity=0.211 Sum_probs=58.8
Q ss_pred cCCCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 3 ASALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 3 ~~~~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
+.+++++-|-|+ +-+|..+|+.|+++||+|.+..|+.++++++.++.... .. ++ ++++-+=+.
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~--------~~----v~----v~vi~~DLs 66 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDK--------TG----VE----VEVIPADLS 66 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHh--------hC----ce----EEEEECcCC
Confidence 334456777786 99999999999999999999999999999988754321 00 01 233333334
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecC
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~s 107 (505)
+...+..+.+++.....+=+++|++.
T Consensus 67 ~~~~~~~l~~~l~~~~~~IdvLVNNA 92 (265)
T COG0300 67 DPEALERLEDELKERGGPIDVLVNNA 92 (265)
T ss_pred ChhHHHHHHHHHHhcCCcccEEEECC
Confidence 44556666666665433346666643
No 354
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=95.14 E-value=0.13 Score=50.17 Aligned_cols=84 Identities=18% Similarity=0.234 Sum_probs=54.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE--EEcCCC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI--ILVKAG 83 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi--l~vp~~ 83 (505)
++|-|.|. |.+|..+++.|++.|++|.+.+|++++.+.+.+.... . . .++.+ .=+.+.
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~--------------~--~---~~~~~~~~D~~~~ 71 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKG--------------Q--G---LSAHALAFDVTDH 71 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh--------------c--C---ceEEEEEccCCCH
Confidence 46888875 9999999999999999999999998776554432110 0 0 12222 223333
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
..++.+++++...+.+=++||++...
T Consensus 72 ~~~~~~~~~~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 72 DAVRAAIDAFEAEIGPIDILVNNAGM 97 (255)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 45666666665555555677776543
No 355
>PRK07326 short chain dehydrogenase; Provisional
Probab=95.13 E-value=0.12 Score=49.50 Aligned_cols=41 Identities=15% Similarity=0.281 Sum_probs=35.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
++|-|+|. |.+|..++..|+++|++|.+.+|++++.+++.+
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~ 48 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAA 48 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHH
Confidence 46888875 999999999999999999999999887666544
No 356
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=95.12 E-value=0.096 Score=53.54 Aligned_cols=187 Identities=11% Similarity=0.063 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChHHHHHHH----Hhhcc---cCC----------CCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 17 MGQNLALNVAEKGFPISVYNRTTSKVDETL----DRAHR---EGQ----------LPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 17 MG~~lA~~La~~G~~V~v~dr~~~~~~~l~----~~~~~---~g~----------~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
||.+||..+..+|++|...|.+..-++.-. ..... .+. .+.....+..++ +.+|.++.+
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~----~~~dmviea 76 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGF----ANADMVIEA 76 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccc----cccceeccc
Confidence 899999999999999999999965443211 11000 000 022333333343 348999888
Q ss_pred cCCCchHH-HHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC--CCeEEeCCCCCCHHHhhcCC-ccccCCCHHHH
Q 010637 80 VKAGSPVD-QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--GLLYLGMGVSGGEEGARHGP-SLMPGGSFEAY 155 (505)
Q Consensus 80 vp~~~~v~-~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~--gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~ 155 (505)
|-.+-.++ +++.+|....++..++-..+|+.+.+...-.-...++ |.||.... .-.+--. ..-..++..+.
T Consensus 77 v~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa-----~~m~LlEii~~~~tS~~~i 151 (380)
T KOG1683|consen 77 VFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPA-----HWMQLLEIILALYTSKLTI 151 (380)
T ss_pred hhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHH-----HHHHHHHHHHhcCCCchHH
Confidence 87776554 4446776666666656555555543332211111221 44443211 0000000 00012222222
Q ss_pred HHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 010637 156 NNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEW 227 (505)
Q Consensus 156 ~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~ 227 (505)
..+-..=..++ +-++.+|. ..|.++-.+ .-....++..++...| .++.+++.+...+
T Consensus 152 A~Ain~~~~~g------k~~vvVg~-c~gf~v~r~-------l~~y~~~~~~~l~e~g-~~p~~iD~~~t~f 208 (380)
T KOG1683|consen 152 ATAINGGSPAG------KLPVVVGN-CCGFRVNRL-------LPPYTIGLNELLLEIG-ADPWLIDSLITKF 208 (380)
T ss_pred HHHHhcccccC------CccEEecc-CCceEEEec-------ccHHHHHHHHHHHHcC-CCHHHHHHHHHhc
Confidence 22222212222 43444554 444444322 1223467778888888 9999999987543
No 357
>PRK06180 short chain dehydrogenase; Provisional
Probab=95.12 E-value=0.14 Score=50.73 Aligned_cols=83 Identities=13% Similarity=0.143 Sum_probs=54.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.|. |.+|..+++.|+++|++|.+.+|++++.+.+.+... .. ...+..-+.+...
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~-----------------~~---~~~~~~D~~d~~~ 64 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHP-----------------DR---ALARLLDVTDFDA 64 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcC-----------------CC---eeEEEccCCCHHH
Confidence 46888875 999999999999999999999999887665543210 00 1222223344445
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+...++++...+.+=++||++...
T Consensus 65 ~~~~~~~~~~~~~~~d~vv~~ag~ 88 (277)
T PRK06180 65 IDAVVADAEATFGPIDVLVNNAGY 88 (277)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCc
Confidence 566666655544444677776543
No 358
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.09 E-value=0.28 Score=52.63 Aligned_cols=116 Identities=17% Similarity=0.080 Sum_probs=65.1
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHH-HH----HHHHhhcccCCCCeeeeCCHH--HHHhhcCCCcEEEEEc
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK-VD----ETLDRAHREGQLPLTGHYTPR--DFVLSIQRPRSVIILV 80 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~-~~----~l~~~~~~~g~~~i~~~~s~~--e~v~~l~~advIil~v 80 (505)
||.|||+|..|.+.|+.|++.|++|.++|+.+.. .. .+.+.+. .+..-.... .+-..+..+|.||.+-
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi-----~~~~g~~~~~~~~~~~~~~~d~vv~s~ 76 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGI-----TVKLGKPLELESFQPWLDQPDLVVVSP 76 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCC-----EEEECCccchhhhhHHhhcCCEEEECC
Confidence 6899999999999999999999999999976532 22 2333221 121111111 1111223489888743
Q ss_pred --CCCc-hHHHHHH---------HH-HhcCCC-CcEEEecCCCCchhHHHHHHHHHHCCCeE
Q 010637 81 --KAGS-PVDQTIA---------AL-SEHMSP-GDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 81 --p~~~-~v~~vl~---------~l-~~~l~~-g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
|.+. .+....+ ++ ...+.+ ..|-|-+|++...++.-+...+...|...
T Consensus 77 gi~~~~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~ 138 (459)
T PRK02705 77 GIPWDHPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQAAGLNA 138 (459)
T ss_pred CCCCCCHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCCCe
Confidence 2221 1211111 11 122222 34666677777666666677777766543
No 359
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.07 E-value=0.22 Score=57.45 Aligned_cols=111 Identities=10% Similarity=0.053 Sum_probs=68.2
Q ss_pred CCcEEEEcccHHHHHH-HHHHHhCCCcEEEEeCChH-HHHHHHHhhcccCCCCeeee-CCHHHHHhhcCCCcEEEEE--c
Q 010637 6 LSRIGLAGLAVMGQNL-ALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIIL--V 80 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~l-A~~La~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~-~s~~e~v~~l~~advIil~--v 80 (505)
+.+|.|||+|..|.+. |+.|.+.|++|+++|.++. ..+.+.+.+ +... ....+.+. .+|+||.+ +
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~g-------i~~~~g~~~~~~~---~~d~vV~SpgI 73 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKG-------ARFFLGHQEEHVP---EDAVVVYSSSI 73 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCC-------CEEeCCCCHHHcC---CCCEEEECCCc
Confidence 3469999999999987 9999999999999997643 334444332 3332 12223333 38988865 2
Q ss_pred CCCc-hHHHHH---------HHHHhcCCC--CcEEEecCCCCchhHHHHHHHHHHCCC
Q 010637 81 KAGS-PVDQTI---------AALSEHMSP--GDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 81 p~~~-~v~~vl---------~~l~~~l~~--g~iIId~st~~~~~t~~~~~~l~~~gi 126 (505)
|.+. .+.... -+++..+.+ ..|-|.+||+...++.-+...|...|.
T Consensus 74 ~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~ 131 (809)
T PRK14573 74 SKDNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKK 131 (809)
T ss_pred CCCCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 3322 222221 122222222 357777888887777777778887664
No 360
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.07 E-value=0.17 Score=53.04 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=68.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|-.|..++.+|+..|. ++.++|++.-....+..+... ....+..-+....+.+..+ .+++-+...+..
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~v~~~~~~ 213 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAAL-NPDVQVEAVQER 213 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHH-CCCCEEEEEecc
Confidence 3579999999999999999999997 799999884322222211000 0000000011112222211 145545554432
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
-. ...+..+ +..-++|||++-... .-..+.+.+.+.++.|+.+.+.|
T Consensus 214 ~~-~~~~~~~---~~~~D~Vv~~~d~~~-~r~~ln~~~~~~~ip~i~~~~~g 260 (376)
T PRK08762 214 VT-SDNVEAL---LQDVDVVVDGADNFP-TRYLLNDACVKLGKPLVYGAVFR 260 (376)
T ss_pred CC-hHHHHHH---HhCCCEEEECCCCHH-HHHHHHHHHHHcCCCEEEEEecc
Confidence 11 1222333 345689999877642 32335566778888888876654
No 361
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.06 E-value=0.12 Score=50.84 Aligned_cols=124 Identities=13% Similarity=0.146 Sum_probs=69.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|..|..++.+|+..|. +++++|.+.=....+..+... ....+-.-+....+.+..+ .+++-+.+.+..
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~l-np~v~i~~~~~~ 110 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARI-NPHIAIETINAR 110 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHH-CCCCEEEEEecc
Confidence 3589999999999999999999996 788998775433333221100 0000000111222222221 256666666543
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
-. ..-+. ..++.-++|||++-.. ..-..+.+.+.+.++-|+.+.+.|
T Consensus 111 i~-~~~~~---~~~~~~DiVi~~~D~~-~~r~~ln~~~~~~~ip~v~~~~~g 157 (245)
T PRK05690 111 LD-DDELA---ALIAGHDLVLDCTDNV-ATRNQLNRACFAAKKPLVSGAAIR 157 (245)
T ss_pred CC-HHHHH---HHHhcCCEEEecCCCH-HHHHHHHHHHHHhCCEEEEeeecc
Confidence 11 11222 2344568999987643 333335566677788888765543
No 362
>PRK05993 short chain dehydrogenase; Provisional
Probab=95.05 E-value=0.15 Score=50.65 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=35.3
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHH
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~ 46 (505)
+++|-|.|. |.+|..+|+.|++.|++|.+.+|++++.+.+.
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~ 45 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALE 45 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 346778886 99999999999999999999999988776554
No 363
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=95.05 E-value=0.14 Score=52.54 Aligned_cols=40 Identities=13% Similarity=0.382 Sum_probs=33.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhC-CCcEEEEeCChHHHHHH
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEK-GFPISVYNRTTSKVDET 45 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~-G~~V~v~dr~~~~~~~l 45 (505)
||+|-|.|. |.+|+.++..|+++ ||+|.+.+|+.++...+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~ 42 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDL 42 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHh
Confidence 368999996 99999999999986 79999999987655444
No 364
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=95.04 E-value=0.097 Score=51.23 Aligned_cols=41 Identities=22% Similarity=0.346 Sum_probs=35.7
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHH
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~ 46 (505)
+++|.|+|. |.+|..++..|+++||+|++..|++++.....
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~ 58 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSL 58 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhc
Confidence 468999995 99999999999999999999999988765443
No 365
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=95.03 E-value=0.15 Score=51.69 Aligned_cols=94 Identities=14% Similarity=0.157 Sum_probs=58.0
Q ss_pred EEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhhccc---CCCCeeee-CCHHHHHhhcCCCcEEEEEcCC--
Q 010637 11 LAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHRE---GQLPLTGH-YTPRDFVLSIQRPRSVIILVKA-- 82 (505)
Q Consensus 11 IIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~~~---g~~~i~~~-~s~~e~v~~l~~advIil~vp~-- 82 (505)
|||+|.+|..+|..|+..+. ++.++|++.++++.......+. -..+.++. .+.+++ ++ +|+||++.-.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~-~d---aDivVitag~~r 76 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDC-KD---ADLVVITAGAPQ 76 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHH-CC---CCEEEECCCCCC
Confidence 69999999999999998876 6999999887654433211100 00022333 344443 33 9999997632
Q ss_pred --Cc-----------hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 83 --GS-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 83 --~~-----------~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+. .++++.+.+..+ .+..+||..||-
T Consensus 77 k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP 115 (299)
T TIGR01771 77 KPGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNP 115 (299)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence 11 133444556554 466777777764
No 366
>PRK12828 short chain dehydrogenase; Provisional
Probab=95.02 E-value=0.23 Score=47.49 Aligned_cols=84 Identities=13% Similarity=0.174 Sum_probs=55.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.|. |.+|..+++.|+++|++|.+.+|++++..+..+.... .. ..++..-+.+...
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~D~~~~~~ 68 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPA----------------DA---LRIGGIDLVDPQA 68 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhh----------------cC---ceEEEeecCCHHH
Confidence 46888875 9999999999999999999999998765544322100 01 2334444444455
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++.+++++.....+-+.|+++...
T Consensus 69 ~~~~~~~~~~~~~~~d~vi~~ag~ 92 (239)
T PRK12828 69 ARRAVDEVNRQFGRLDALVNIAGA 92 (239)
T ss_pred HHHHHHHHHHHhCCcCEEEECCcc
Confidence 666666666555455677776543
No 367
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.01 E-value=0.13 Score=50.18 Aligned_cols=84 Identities=14% Similarity=0.285 Sum_probs=55.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE--EEcCCC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI--ILVKAG 83 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi--l~vp~~ 83 (505)
++|-|.|. |.+|..++..|+++|++|.+.+|++++.+++.+..... . +++.+ .-+.+.
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~Dl~~~ 68 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKA----------------G---GKAIGVAMDVTNE 68 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhc----------------C---ceEEEEECCCCCH
Confidence 45777776 99999999999999999999999998776655432100 0 22222 222333
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
..++++++++.....+-+.||++...
T Consensus 69 ~~~~~~~~~~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 69 DAVNAGIDKVAERFGSVDILVSNAGI 94 (262)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 45566666665555556788887654
No 368
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=95.00 E-value=0.15 Score=52.34 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=29.5
Q ss_pred EEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChHHHHHHHH
Q 010637 9 IGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLD 47 (505)
Q Consensus 9 IgIIGlG~MG~~lA~~La~~-G~~V~-v~dr~~~~~~~l~~ 47 (505)
|||+|+|.+|+..++.+.+. +.+|. +.|.+++....+..
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~ 41 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAK 41 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHH
Confidence 69999999999999998754 56655 56777776555544
No 369
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=95.00 E-value=0.09 Score=54.32 Aligned_cols=97 Identities=11% Similarity=0.088 Sum_probs=56.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCC-CcEEEE-eCChHHHHHHHHhhcc-----cCC--CCeeeeCCHHHHHhhcCCCcEE
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKG-FPISVY-NRTTSKVDETLDRAHR-----EGQ--LPLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G-~~V~v~-dr~~~~~~~l~~~~~~-----~g~--~~i~~~~s~~e~v~~l~~advI 76 (505)
+||+|+|+ |.||..+++.|.++. ++|... +++...-+.+.+.... ... ..+.......+... .+|+|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~DvV 77 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASK---DVDIV 77 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhc---cCCEE
Confidence 48999995 999999999999877 577655 5543321222111100 000 01111111112223 49999
Q ss_pred EEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
++++|.+ ....+...+. ..|..+||.|..+
T Consensus 78 f~a~p~~-~s~~~~~~~~---~~G~~VIDlsg~f 107 (341)
T TIGR00978 78 FSALPSE-VAEEVEPKLA---EAGKPVFSNASNH 107 (341)
T ss_pred EEeCCHH-HHHHHHHHHH---HCCCEEEECChhh
Confidence 9999997 3344444332 4688899988764
No 370
>PRK08265 short chain dehydrogenase; Provisional
Probab=94.98 E-value=0.19 Score=49.30 Aligned_cols=47 Identities=13% Similarity=0.114 Sum_probs=36.7
Q ss_pred CCcCCCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 1 MEASALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 1 m~~~~~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
|.+...+++-|.|. |.+|..+|+.|++.|++|++.+|++++.+++.+
T Consensus 1 m~~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (261)
T PRK08265 1 MIGLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAA 48 (261)
T ss_pred CCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 43322345777775 999999999999999999999999877666554
No 371
>PRK07774 short chain dehydrogenase; Provisional
Probab=94.95 E-value=0.15 Score=49.34 Aligned_cols=87 Identities=13% Similarity=0.086 Sum_probs=56.1
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.++|-|.|. |.+|..+++.|+++|++|.+.+|+++..+.+.+..... -.. ...+..-+.+..
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~~~~ 68 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD--------------GGT---AIAVQVDVSDPD 68 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCc---EEEEEcCCCCHH
Confidence 356888886 99999999999999999999999987665544321100 000 112222234444
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.++.+++.+.....+=++||++...
T Consensus 69 ~~~~~~~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 69 SAKAMADATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 5666666666555555788887664
No 372
>PRK14030 glutamate dehydrogenase; Provisional
Probab=94.93 E-value=0.22 Score=52.98 Aligned_cols=117 Identities=13% Similarity=0.107 Sum_probs=74.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEE--------Ee---CChHHHHHHHHhhcccCC--------C-CeeeeCCHHHH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISV--------YN---RTTSKVDETLDRAHREGQ--------L-PLTGHYTPRDF 66 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v--------~d---r~~~~~~~l~~~~~~~g~--------~-~i~~~~s~~e~ 66 (505)
.+|+|-|+|++|...|+.|.+.|..|.. || .+.++++.+.+.....+. + +.+.. +.+++
T Consensus 229 ~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~~~~~ 307 (445)
T PRK14030 229 KTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-AGKKP 307 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-CCccc
Confidence 5799999999999999999999999988 88 777764433322111100 0 11111 23333
Q ss_pred HhhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 67 v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
... .||+.+-|--.+....+.++.|... +=++|+...|. | .|.+..+.|.++|+.|+.
T Consensus 308 ~~~--~cDVliPcAl~n~I~~~na~~l~~~--~ak~V~EgAN~-p-~t~eA~~iL~~rGI~~vP 365 (445)
T PRK14030 308 WEQ--KVDIALPCATQNELNGEDADKLIKN--GVLCVAEVSNM-G-CTAEAIDKFIAAKQLFAP 365 (445)
T ss_pred eec--cccEEeeccccccCCHHHHHHHHHc--CCeEEEeCCCC-C-CCHHHHHHHHHCCCEEeC
Confidence 331 4888887765543333333444321 34789999998 4 555677888999998874
No 373
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=94.92 E-value=0.048 Score=56.26 Aligned_cols=90 Identities=14% Similarity=0.214 Sum_probs=56.0
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEE---EEeCChHHHHHHHHhhcccCCCCeeee-CCHHHHHhhcCCCcEEEEEcCC
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPIS---VYNRTTSKVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~---v~dr~~~~~~~l~~~~~~~g~~~i~~~-~s~~e~v~~l~~advIil~vp~ 82 (505)
+|+||| .|..|..|.+.|.+++|++. ++.++...-+.+.-.+. .+... .+.+++ . .+|++|+|+|.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~-----~~~~~~~~~~~~-~---~~D~v~~a~g~ 71 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGK-----ELEVNEAKIESF-E---GIDIALFSAGG 71 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCe-----eEEEEeCChHHh-c---CCCEEEECCCH
Confidence 689999 59999999999999988743 44444332222211111 12222 133333 3 38999999998
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+ ...+....+ +..|..|||.|+.+
T Consensus 72 ~-~s~~~a~~~---~~~G~~VID~ss~~ 95 (339)
T TIGR01296 72 S-VSKEFAPKA---AKCGAIVIDNTSAF 95 (339)
T ss_pred H-HHHHHHHHH---HHCCCEEEECCHHH
Confidence 7 445454444 34678999998743
No 374
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=94.89 E-value=0.19 Score=48.93 Aligned_cols=82 Identities=13% Similarity=0.214 Sum_probs=53.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+|-|+|. |.+|..++..|++.|++|.+.+|++++.+.+..... .. ...+-.=+.+...
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dl~~~~~ 60 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELG-----------------DN---LYIAQLDVRNRAA 60 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc-----------------cc---eEEEEecCCCHHH
Confidence 46888885 999999999999999999999999887665543210 00 1222222334445
Q ss_pred HHHHHHHHHhcCCCCcEEEecCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (505)
++.+++.+.....+=+++|.+..
T Consensus 61 i~~~~~~~~~~~~~id~vi~~ag 83 (248)
T PRK10538 61 IEEMLASLPAEWRNIDVLVNNAG 83 (248)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 56666666554444567776554
No 375
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.88 E-value=0.46 Score=50.70 Aligned_cols=114 Identities=12% Similarity=0.066 Sum_probs=67.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHH--HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc--C
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK--VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV--K 81 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~--~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v--p 81 (505)
.++|.|+|+|..|.+.+..|++.|++|+++|..+.. .+.+ +.+. .+.......+.++. .|+||..- |
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l-~~g~-----~~~~~~~~~~~~~~---~d~vv~spgi~ 76 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKL-PENV-----ERHTGSLNDEWLLA---ADLIVASPGIA 76 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHH-hcCC-----EEEeCCCCHHHhcC---CCEEEECCCCC
Confidence 357999999999999999999999999999975432 2233 2121 12222222233333 78666543 2
Q ss_pred CC-chHHHHH---------HHHHhc-CCCCcEEEecCCCCchhHHHHHHHHHHCCCeE
Q 010637 82 AG-SPVDQTI---------AALSEH-MSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 82 ~~-~~v~~vl---------~~l~~~-l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
.+ ..+.... .++... .....|-|-+|++...++.-+...|...|..+
T Consensus 77 ~~~~~~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~ 134 (438)
T PRK03806 77 LAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGWKV 134 (438)
T ss_pred CCCHHHHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHcCCCE
Confidence 22 1222221 123322 23334667778887777776777887776544
No 376
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.87 E-value=0.27 Score=51.09 Aligned_cols=124 Identities=14% Similarity=0.224 Sum_probs=69.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|-.|..++.+|+..|. ++.++|.+.=....+..+... ....+-.-+....+-+..+ .+++-+.+.+..
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~-np~v~v~~~~~~ 106 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLAL-NPDVKVTVSVRR 106 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHH-CCCcEEEEEEee
Confidence 3589999999999999999999997 788999885322222211000 0000000011112222221 267777766543
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
-..+ .+...+..-|+|||++-.. ..-..+...+.+.++-|+.+.+.|
T Consensus 107 i~~~----~~~~~~~~~DvVvd~~d~~-~~r~~~n~~c~~~~ip~v~~~~~g 153 (355)
T PRK05597 107 LTWS----NALDELRDADVILDGSDNF-DTRHLASWAAARLGIPHVWASILG 153 (355)
T ss_pred cCHH----HHHHHHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEec
Confidence 2212 1222344568999997653 222334556677788888776554
No 377
>PRK07236 hypothetical protein; Provisional
Probab=94.81 E-value=0.039 Score=57.72 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=34.9
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|...+.++|.|||.|.-|..+|..|+++|++|+++++.+.
T Consensus 1 ~~~~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 1 MTHMSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4443456899999999999999999999999999998864
No 378
>PRK08163 salicylate hydroxylase; Provisional
Probab=94.80 E-value=0.034 Score=58.14 Aligned_cols=36 Identities=17% Similarity=0.348 Sum_probs=33.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
+.++|.|||.|..|..+|..|+++|++|.+++|++.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 346899999999999999999999999999999864
No 379
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=94.80 E-value=0.034 Score=58.65 Aligned_cols=33 Identities=27% Similarity=0.634 Sum_probs=31.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
.+|.|||.|.+|.+.|..|++.|++|+++|+.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 489999999999999999999999999999885
No 380
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.79 E-value=1.7 Score=45.31 Aligned_cols=159 Identities=12% Similarity=0.112 Sum_probs=93.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCC---------------Ce---eeeCCHHHH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQL---------------PL---TGHYTPRDF 66 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~---------------~i---~~~~s~~e~ 66 (505)
|.+|-|+|+|..+..+|..|.+.+. +|-+.+|...+-+.+.+.....+.. .+ ....+.+++
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i 80 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEI 80 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHh
Confidence 3579999999999999999998875 6999999888877776543321000 01 112344555
Q ss_pred HhhcCCCcEEEEEcCCCchHHHHHHHHHhc-CCCCcEEEecCCCCchhHHHHHHHHHHCC--CeEEe------C-CCCCC
Q 010637 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEH-MSPGDCIIDGGNEWYLNTERRIHEASQKG--LLYLG------M-GVSGG 136 (505)
Q Consensus 67 v~~l~~advIil~vp~~~~v~~vl~~l~~~-l~~g~iIId~st~~~~~t~~~~~~l~~~g--i~~i~------~-pvsGg 136 (505)
... =|.+|+|||++ +-.+|+++|-+. |..=+.||-.|... ....-+...+.+.| +.++. . -++.+
T Consensus 81 ~g~---WdtlILavtaD-AY~~VL~ql~~~~L~~vk~iVLvSPtf-GS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~ 155 (429)
T PF10100_consen 81 EGE---WDTLILAVTAD-AYLDVLQQLPWEVLKRVKSIVLVSPTF-GSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSDG 155 (429)
T ss_pred ccc---ccEEEEEechH-HHHHHHHhcCHHHHhhCCEEEEECccc-chHHHHHHHHHhcCCCceEEEeecccccceeccC
Confidence 544 79999999997 667788766542 33334444444443 23333444455443 33322 1 23333
Q ss_pred HHHh---hcCC--ccccC---CCHHHHHHHHHHHHHHhccc
Q 010637 137 EEGA---RHGP--SLMPG---GSFEAYNNIRDILQKVAAQV 169 (505)
Q Consensus 137 ~~~a---~~G~--~im~g---g~~ea~~~v~~ll~~iga~~ 169 (505)
++.. ..|. .+..| ++.....++..+|+.++.+.
T Consensus 156 ~~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~ 196 (429)
T PF10100_consen 156 EQPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQL 196 (429)
T ss_pred CCcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeE
Confidence 2111 1111 34444 24456778888998888553
No 381
>PRK12939 short chain dehydrogenase; Provisional
Probab=94.76 E-value=0.18 Score=48.72 Aligned_cols=86 Identities=13% Similarity=0.128 Sum_probs=54.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|+|. |.+|..+|..|++.|++|.+.+|++++.+.+.+.... .-.. .+++..=+.+...
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~Dl~~~~~ 70 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEA--------------AGGR---AHAIAADLADPAS 70 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh--------------cCCc---EEEEEccCCCHHH
Confidence 56888885 9999999999999999999999998877665432110 0000 1222222333344
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++.+++.+.....+-+.||++...
T Consensus 71 ~~~~~~~~~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 71 VQRFFDAAAAALGGLDGLVNNAGI 94 (250)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 555566555544455777776554
No 382
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.76 E-value=0.11 Score=51.94 Aligned_cols=74 Identities=15% Similarity=0.254 Sum_probs=57.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|+++.... .++++...+ +|+||.++.....
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~~aTVtichs~T---------------------~~l~~~~~~---ADIvIsAvGkp~~ 211 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT---------------------QDLPAVTRR---ADVLVVAVGRPHL 211 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEecCCcCc
Confidence 47999995 7899999999999999999886332 245566666 9999999977543
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 212 i~------~~~vk~GavVIDVGin~ 230 (287)
T PRK14173 212 IT------PEMVRPGAVVVDVGINR 230 (287)
T ss_pred cC------HHHcCCCCEEEEccCcc
Confidence 22 23478999999998764
No 383
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.75 E-value=0.1 Score=52.14 Aligned_cols=74 Identities=14% Similarity=0.203 Sum_probs=56.2
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG-~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|||-+ ..|.++|..|...|..|+++.++.. ++++.+.. +|+||.+++-..-
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~---------------------~L~~~~~~---ADIvI~Avgk~~l 208 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTE---------------------NLKAELRQ---ADILVSAAGKAGF 208 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecChh---------------------HHHHHHhh---CCEEEECCCcccc
Confidence 579999998 9999999999999999999886532 34444555 9999999974322
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+. .+ .+++|.+|||.+...
T Consensus 209 v~---~~---~vk~GavVIDVgi~~ 227 (279)
T PRK14178 209 IT---PD---MVKPGATVIDVGINQ 227 (279)
T ss_pred cC---HH---HcCCCcEEEEeeccc
Confidence 22 22 258999999998653
No 384
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=94.70 E-value=0.041 Score=57.60 Aligned_cols=40 Identities=20% Similarity=0.332 Sum_probs=35.1
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|++..+.+|.|||.|..|..+|..|+++|++|.++++.+.
T Consensus 1 ~~~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 1 MSRRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 5554556899999999999999999999999999998753
No 385
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=94.70 E-value=0.27 Score=53.05 Aligned_cols=116 Identities=12% Similarity=0.206 Sum_probs=75.4
Q ss_pred CcEEEEcc----------cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhc--------c------cCC-CCeeeeC
Q 010637 7 SRIGLAGL----------AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH--------R------EGQ-LPLTGHY 61 (505)
Q Consensus 7 ~~IgIIGl----------G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~--------~------~g~-~~i~~~~ 61 (505)
.+|+|+|+ ..-...++..|.+.|.+|.+||.--+..+.-...+. . .+. .++..+.
T Consensus 325 ~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (473)
T PLN02353 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVSVVW 404 (473)
T ss_pred CEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccceeeeC
Confidence 58999998 346788999999999999999976433211101000 0 000 0245667
Q ss_pred CHHHHHhhcCCCcEEEEEcCCCchHHHH-HHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 62 TPRDFVLSIQRPRSVIILVKAGSPVDQT-IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 62 s~~e~v~~l~~advIil~vp~~~~v~~v-l~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
++.+++++ +|+||+++... ..+.. ++.+.+.+.+..+|+|+-+.... +.+++.|+.|++.+
T Consensus 405 ~~~~a~~~---aD~vvi~t~~~-ef~~l~~~~~~~~m~~~~~viD~rn~l~~------~~~~~~G~~y~~~G 466 (473)
T PLN02353 405 DAYEATKG---AHGICILTEWD-EFKTLDYQKIYDNMQKPAFVFDGRNVLDH------EKLREIGFIVYSIG 466 (473)
T ss_pred CHHHHhcC---CCEEEECCCCh-HhcccCHHHHHHhccCCCEEEECCCCCCH------HHHHhCCcEEEEeC
Confidence 77777776 99999999885 44432 35555556555689999998743 22345588888754
No 386
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=94.70 E-value=0.06 Score=55.35 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=56.5
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCC---cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 5 ALSRIGLAGL-AVMGQNLALNVAEKGF---PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 5 ~~~~IgIIGl-G~MG~~lA~~La~~G~---~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
..++|||||+ |..|.-|.+.|.++.| ++..+......-+.+.-.+. .+.+. +++++. +...|++|+++
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~-----~~~v~-~~~~~~--~~~~Dvvf~a~ 74 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGK-----SVTVQ-DAAEFD--WSQAQLAFFVA 74 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCc-----ceEEE-eCchhh--ccCCCEEEECC
Confidence 3468999997 9999999999999655 44444322211111110010 12222 344332 12389999999
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
|.+ ...++...+. ..|..|||.|..+
T Consensus 75 p~~-~s~~~~~~~~---~~g~~VIDlS~~f 100 (336)
T PRK08040 75 GRE-ASAAYAEEAT---NAGCLVIDSSGLF 100 (336)
T ss_pred CHH-HHHHHHHHHH---HCCCEEEECChHh
Confidence 986 4444544443 4689999998754
No 387
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.68 E-value=0.13 Score=51.52 Aligned_cols=74 Identities=15% Similarity=0.246 Sum_probs=57.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|+++.... .++++.+.+ +|+||.++.....
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVtichs~T---------------------~~l~~~~~~---ADIvI~AvG~~~~ 213 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT---------------------KDLPQVAKE---ADILVVATGLAKF 213 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEecCCcCc
Confidence 57999996 6789999999999999999885321 245666666 9999999977643
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 214 i~------~~~vk~GavVIDvGin~ 232 (284)
T PRK14170 214 VK------KDYIKPGAIVIDVGMDR 232 (284)
T ss_pred cC------HHHcCCCCEEEEccCcc
Confidence 22 13478999999998764
No 388
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=94.67 E-value=0.15 Score=52.33 Aligned_cols=99 Identities=12% Similarity=0.069 Sum_probs=55.9
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChHH--HHHHHHhhcc---cCCCCeeeeCCHHHHHhhcCCCc
Q 010637 8 RIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTTSK--VDETLDRAHR---EGQLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 8 ~IgIIGl-G~MG~~lA~~La~~G~-------~V~v~dr~~~~--~~~l~~~~~~---~g~~~i~~~~s~~e~v~~l~~ad 74 (505)
+|+|||+ |.+|..+|..|+..|. ++.++|+++.. .+.......+ .....+....+..+.++ .+|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~---~aD 77 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFT---DVD 77 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhC---CCC
Confidence 6999999 9999999999998654 59999996542 2111100000 00001222223233333 399
Q ss_pred EEEEEcCC----Cch-----------HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 75 SVIILVKA----GSP-----------VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 75 vIil~vp~----~~~-----------v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+||++.-. +.. ++++...+.++-.++.+||-.||-
T Consensus 78 iVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNP 127 (324)
T TIGR01758 78 VAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNP 127 (324)
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCc
Confidence 99987632 211 333345555554466777777753
No 389
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.66 E-value=0.13 Score=51.47 Aligned_cols=74 Identities=15% Similarity=0.255 Sum_probs=57.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|++++... .++++...+ +|+||.++.-...
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~~atVt~chs~T---------------------~~l~~~~~~---ADIvIsAvGk~~~ 215 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT---------------------QNLPSIVRQ---ADIIVGAVGKPEF 215 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEeCCCcCc
Confidence 47999996 7899999999999999999987331 245556666 9999999977543
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 216 i~------~~~ik~gavVIDvGin~ 234 (284)
T PRK14177 216 IK------ADWISEGAVLLDAGYNP 234 (284)
T ss_pred cC------HHHcCCCCEEEEecCcc
Confidence 22 23578999999998754
No 390
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=94.62 E-value=0.28 Score=48.07 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=54.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++-|.|. |.+|..+|+.|+++|++|.+.+|++++.+.+.+... .. ...+..=+.+...
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 66 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFG-----------------DH---VLVVEGDVTSYAD 66 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------------Cc---ceEEEccCCCHHH
Confidence 35666765 889999999999999999999999887766554211 00 1222222333345
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++.+++++.....+=+++|++...
T Consensus 67 ~~~~~~~~~~~~g~id~li~~ag~ 90 (263)
T PRK06200 67 NQRAVDQTVDAFGKLDCFVGNAGI 90 (263)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666666665555455777776653
No 391
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.62 E-value=0.12 Score=51.52 Aligned_cols=74 Identities=14% Similarity=0.261 Sum_probs=57.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|++++... .++.+.+.+ +|+||.++.-...
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T---------------------~~l~~~~~~---ADIvIsAvGkp~~ 214 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT---------------------KNLKEVCKK---ADILVVAIGRPKF 214 (278)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEcCCCcCc
Confidence 47999996 7899999999999999999997431 255666666 9999999977643
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGin~ 233 (278)
T PRK14172 215 ID------EEYVKEGAIVIDVGTSS 233 (278)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 22 13478999999997654
No 392
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.62 E-value=0.12 Score=51.94 Aligned_cols=74 Identities=14% Similarity=0.232 Sum_probs=57.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|+++... +.++++.+.+ ||+||.++.-...
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~---------------------T~~l~~~~~~---ADIvIsAvGkp~~ 214 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAANATVTIAHSR---------------------TQDLASITRE---ADILVAAAGRPNL 214 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccCCcCc
Confidence 57999995 789999999999999999998532 1255666666 9999999976543
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGin~ 233 (297)
T PRK14186 215 IG------AEMVKPGAVVVDVGIHR 233 (297)
T ss_pred cC------HHHcCCCCEEEEecccc
Confidence 22 13578999999998764
No 393
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.57 E-value=0.42 Score=51.35 Aligned_cols=122 Identities=17% Similarity=0.137 Sum_probs=69.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc--CC
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV--KA 82 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v--p~ 82 (505)
...+|+|+|+|.-|.+.++.|. .|.+|+++|.++.....+.+... . ......+ .+.... +|+||..- |.
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~-~g~~v~v~D~~~~~~~~~~~~~~-~---~~~~~~~-~~~~~~---~d~vV~SPgI~~ 75 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQ-NKYDVIVYDDLKANRDIFEELYS-K---NAIAALS-DSRWQN---LDKIVLSPGIPL 75 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHh-CCCEEEEECCCCCchHHHHhhhc-C---ceeccCC-hhHhhC---CCEEEECCCCCC
Confidence 3458999999999999999999 59999999965443322221100 0 1211112 233333 88887753 33
Q ss_pred Cch-HHHHH---------HHHH-hcCCC-CcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 83 GSP-VDQTI---------AALS-EHMSP-GDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 83 ~~~-v~~vl---------~~l~-~~l~~-g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
..+ +...- -+++ ....+ ..|-|.+|++...+|.-+...+...|..+.-++..|
T Consensus 76 ~~p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GniG 140 (454)
T PRK01368 76 THEIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIG 140 (454)
T ss_pred CCHHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccCC
Confidence 222 22111 1222 22222 346677777777777777778887776554444444
No 394
>PRK08309 short chain dehydrogenase; Provisional
Probab=94.56 E-value=0.39 Score=44.79 Aligned_cols=41 Identities=27% Similarity=0.314 Sum_probs=34.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
|++-|+|..-||..++..|++.|++|.+.+|++++.+.+..
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~ 41 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKGFHVSVIARREVKLENVKR 41 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHH
Confidence 46888887668888999999999999999999887666543
No 395
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.54 E-value=0.18 Score=48.66 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=37.4
Q ss_pred CCcCCCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 1 MEASALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 1 m~~~~~~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
|.+.+.++|-|.| .|.+|..+++.|+++|++|.+.+|++++...+.+
T Consensus 1 ~~~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~ 48 (251)
T PRK12826 1 TRDLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAE 48 (251)
T ss_pred CCCCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3343445788888 6999999999999999999999999876655443
No 396
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=94.53 E-value=0.29 Score=47.75 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=53.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.|. |.+|..+|+.|+++|++|.+.+|+.++.+++.+.... . ...+..=+.+...
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~D~~~~~~ 66 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGP-----------------A---AIAVSLDVTRQDS 66 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCC-----------------c---eEEEEccCCCHHH
Confidence 45777774 9999999999999999999999998877665442100 0 1112222333345
Q ss_pred HHHHHHHHHhcCCCCcEEEecCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (505)
++.+++.+...+.+=+++|++..
T Consensus 67 ~~~~~~~~~~~~~~id~li~~ag 89 (257)
T PRK07067 67 IDRIVAAAVERFGGIDILFNNAA 89 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 56666666555555567777654
No 397
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=94.52 E-value=0.49 Score=50.35 Aligned_cols=74 Identities=16% Similarity=0.246 Sum_probs=50.9
Q ss_pred CcEEEEcccHH-HHHHHHHHHhC-----CCcEEEEeCChHHHHHHHH---hhcc-cC-CCCeeeeCCHHHHHhhcCCCcE
Q 010637 7 SRIGLAGLAVM-GQNLALNVAEK-----GFPISVYNRTTSKVDETLD---RAHR-EG-QLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgIIGlG~M-G~~lA~~La~~-----G~~V~v~dr~~~~~~~l~~---~~~~-~g-~~~i~~~~s~~e~v~~l~~adv 75 (505)
|||+|||.|.. ...+...|+.. +-+|.++|.++++.+.... .... .| .+++..+++.+++++. +|+
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~g---ADf 77 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIID---ADF 77 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC---CCE
Confidence 58999999873 33455556543 3589999999988654322 1111 01 1357888999998887 999
Q ss_pred EEEEcCCC
Q 010637 76 VIILVKAG 83 (505)
Q Consensus 76 Iil~vp~~ 83 (505)
||..+..+
T Consensus 78 Vi~~irvG 85 (425)
T cd05197 78 VINQFRVG 85 (425)
T ss_pred EEEeeecC
Confidence 99998655
No 398
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=94.50 E-value=0.24 Score=48.54 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=29.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-----------CcEEEEeCCh
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG-----------FPISVYNRTT 39 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G-----------~~V~v~dr~~ 39 (505)
..+|.|||+|-.|+.++.+|++.| .+++++|.+.
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 458999999999999999999874 2889998765
No 399
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.50 E-value=0.78 Score=50.42 Aligned_cols=74 Identities=16% Similarity=0.210 Sum_probs=50.2
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcc-----cCC---CCeee----eCCHHHHHhhcCCCc
Q 010637 8 RIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR-----EGQ---LPLTG----HYTPRDFVLSIQRPR 74 (505)
Q Consensus 8 ~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~-----~g~---~~i~~----~~s~~e~v~~l~~ad 74 (505)
.|.|.|. |.+|..++..|++.|++|.+++|+.++.+.+.+.... .|. .++.. ..+.+++.+.+..+|
T Consensus 82 vVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLggiD 161 (576)
T PLN03209 82 LAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALGNAS 161 (576)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhcCCC
Confidence 4777875 9999999999999999999999999887765432100 000 01111 234455555566799
Q ss_pred EEEEEcC
Q 010637 75 SVIILVK 81 (505)
Q Consensus 75 vIil~vp 81 (505)
+||.++.
T Consensus 162 iVVn~AG 168 (576)
T PLN03209 162 VVICCIG 168 (576)
T ss_pred EEEEccc
Confidence 9998864
No 400
>PRK08017 oxidoreductase; Provisional
Probab=94.48 E-value=0.25 Score=47.95 Aligned_cols=40 Identities=18% Similarity=0.315 Sum_probs=35.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHH
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~ 46 (505)
++|-|.|. |.+|..+++.|+++|++|.+.+|++++.+.+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 43 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMN 43 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHH
Confidence 46889998 99999999999999999999999988765543
No 401
>PRK14852 hypothetical protein; Provisional
Probab=94.43 E-value=0.16 Score=58.72 Aligned_cols=125 Identities=20% Similarity=0.214 Sum_probs=74.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhc-ccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~-~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|+|||+|-+|..++.+|+..|. ++++.|-+.=....+..+.. .....+-.-+...++.+..+ .+++=|.+.+.+
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~I-NP~v~I~~~~~~ 410 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSV-NPFLDIRSFPEG 410 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHH-CCCCeEEEEecC
Confidence 3589999999999999999999997 67788776533333322110 00000001111223333322 267777777664
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhH-HHHHHHHHHCCCeEEeCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNT-ERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t-~~~~~~l~~~gi~~i~~pvsG 135 (505)
- ..+.++++ ++.=|+|||+......+. ..+.+.+.+.++-++.+++.|
T Consensus 411 I-~~en~~~f---l~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G 459 (989)
T PRK14852 411 V-AAETIDAF---LKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLG 459 (989)
T ss_pred C-CHHHHHHH---hhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccc
Confidence 2 23333444 345589999887654333 344556777889888877654
No 402
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.41 E-value=0.24 Score=48.11 Aligned_cols=86 Identities=13% Similarity=0.203 Sum_probs=56.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.| .|.+|..+++.|+++|++|.+.+|++++.+.+....... . .+...+..-+.+...
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~----------------~-~~~~~~~~Dl~~~~~ 67 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA----------------G-GKAIGVAMDVTDEEA 67 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc----------------C-CcEEEEEcCCCCHHH
Confidence 4688888 599999999999999999999999988776654432100 0 002223333344445
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++.+++.+.....+-++||++...
T Consensus 68 ~~~~~~~~~~~~~~~d~vi~~a~~ 91 (258)
T PRK12429 68 INAGIDYAVETFGGVDILVNNAGI 91 (258)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 666666666655555777776543
No 403
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=94.41 E-value=0.12 Score=52.35 Aligned_cols=81 Identities=11% Similarity=0.286 Sum_probs=53.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.||+|+|. |..|.-|.+.|+.+.+ |-+...+.++. + . ..+.+++.++ +|++|+++|++ .
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~-~el~~l~s~~~--~------------~-~~~~~~~~~~---~D~vFlalp~~-~ 61 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDD-IELLSIAPDRR--K------------D-AAERAKLLNA---ADVAILCLPDD-A 61 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCC-eEEEEEecccc--c------------C-cCCHhHhhcC---CCEEEECCCHH-H
Confidence 47999996 9999999999998853 33222222110 0 0 1244455555 89999999997 4
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
..+.+..+. ..|..|||.|+.+
T Consensus 62 s~~~~~~~~---~~g~~VIDlSadf 83 (310)
T TIGR01851 62 AREAVSLVD---NPNTCIIDASTAY 83 (310)
T ss_pred HHHHHHHHH---hCCCEEEECChHH
Confidence 454544443 4688999998754
No 404
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.41 E-value=0.19 Score=50.80 Aligned_cols=108 Identities=15% Similarity=0.034 Sum_probs=74.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc--
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS-- 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~-- 84 (505)
.+|+|||--.=-..++..|.+.|++|.++.-+.+.. ... ++..+++.+++.+. +|+|+..+|...
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~---~~~-------g~~~~~~~~~~~~~---ad~ii~~~p~~~~~ 69 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDH---GFT-------GATKSSSLEEALSD---VDVIILPVPGTNDE 69 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccccc---ccC-------CceeeccHHHHhcc---CCEEEECCccccCC
Confidence 479999988888999999999999999976553211 111 35677788887776 999999988521
Q ss_pred -hHHHH-------H-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 85 -PVDQT-------I-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 85 -~v~~v-------l-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
.++.. + .+++..++++.+++ .+...+.. .+.+.++|+..++.+
T Consensus 70 ~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~----~~~~~~~gi~~~~~~ 121 (296)
T PRK08306 70 GNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYL----KELAKETNRKLVELF 121 (296)
T ss_pred ceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHH----HHHHHHCCCeEEEEe
Confidence 11211 1 35677788998665 45555442 245668899887643
No 405
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.41 E-value=0.14 Score=51.08 Aligned_cols=74 Identities=16% Similarity=0.299 Sum_probs=56.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|+++.... .++++...+ +|+||.++.-...
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~~atVtichs~T---------------------~~l~~~~~~---ADIvI~AvG~p~~ 212 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT---------------------RNLKQLTKE---ADILVVAVGVPHF 212 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEECCCC---------------------CCHHHHHhh---CCEEEEccCCcCc
Confidence 47999995 7899999999999999999885321 245555665 9999999977643
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+.. ..+++|.+|||.+...
T Consensus 213 i~~------~~vk~GavVIDvGin~ 231 (282)
T PRK14169 213 IGA------DAVKPGAVVIDVGISR 231 (282)
T ss_pred cCH------HHcCCCcEEEEeeccc
Confidence 321 2478999999998754
No 406
>PRK06139 short chain dehydrogenase; Provisional
Probab=94.39 E-value=0.28 Score=50.39 Aligned_cols=83 Identities=12% Similarity=0.122 Sum_probs=55.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEE--EEEcCCC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV--IILVKAG 83 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advI--il~vp~~ 83 (505)
+.|-|.|. |-+|..+|..|++.|++|.+.+|++++.+++.++.... . +++. ..=+.+.
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~----------------g---~~~~~~~~Dv~d~ 68 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRAL----------------G---AEVLVVPTDVTDA 68 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEEeeCCCH
Confidence 34667776 89999999999999999999999998877665432110 0 2232 2233444
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
+.++.+++.+.....+=+++|++..
T Consensus 69 ~~v~~~~~~~~~~~g~iD~lVnnAG 93 (330)
T PRK06139 69 DQVKALATQAASFGGRIDVWVNNVG 93 (330)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCC
Confidence 5666676666655444477887754
No 407
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=94.39 E-value=0.56 Score=49.83 Aligned_cols=74 Identities=11% Similarity=0.126 Sum_probs=49.5
Q ss_pred CcEEEEcccHHHH-HHHHHHHhC-----CCcEEEEeCC-hHHHHHHHH---hhcc-cC-CCCeeeeCCHHHHHhhcCCCc
Q 010637 7 SRIGLAGLAVMGQ-NLALNVAEK-----GFPISVYNRT-TSKVDETLD---RAHR-EG-QLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 7 ~~IgIIGlG~MG~-~lA~~La~~-----G~~V~v~dr~-~~~~~~l~~---~~~~-~g-~~~i~~~~s~~e~v~~l~~ad 74 (505)
|||+|||.|..-. .+...|+.. +-+|.++|++ +++++.... .... .+ .+.+..+.+.++++.. +|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~g---ad 77 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEG---AD 77 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC---CC
Confidence 5899999998643 344555542 3579999999 787644221 1110 00 1257788899998887 99
Q ss_pred EEEEEcCCC
Q 010637 75 SVIILVKAG 83 (505)
Q Consensus 75 vIil~vp~~ 83 (505)
+||.++..+
T Consensus 78 fVi~~~~vg 86 (419)
T cd05296 78 FVFTQIRVG 86 (419)
T ss_pred EEEEEEeeC
Confidence 999998443
No 408
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.38 E-value=0.15 Score=51.01 Aligned_cols=74 Identities=15% Similarity=0.206 Sum_probs=56.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|+++.... .++++.... ||+||.++.-...
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T---------------------~nl~~~~~~---ADIvIsAvGkp~~ 213 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------------------KDLSLYTRQ---ADLIIVAAGCVNL 213 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEcCCCcCc
Confidence 57999996 7789999999999999999887432 245555665 9999999977643
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+.. ..+++|.+|||.+...
T Consensus 214 i~~------~~vk~GavVIDvGin~ 232 (282)
T PRK14166 214 LRS------DMVKEGVIVVDVGINR 232 (282)
T ss_pred cCH------HHcCCCCEEEEecccc
Confidence 321 2478999999998654
No 409
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=94.38 E-value=0.28 Score=49.35 Aligned_cols=104 Identities=13% Similarity=0.173 Sum_probs=76.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHH
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~ 405 (505)
+.++.+|.++|.+.+..+.+++|++.+.++ +++|.+++.++.+.+ .-+|.+++.....+... +. ++.
T Consensus 163 g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~------~Gid~~~~~~~l~~~-~~~s~~~~~~~~~~~~~-~~-----~~~ 229 (291)
T TIGR01505 163 GDGQTCKVANQIIVALNIEAVSEALVFASK------AGVDPVRVRQALRGG-LAGSTVLEVKGERVIDR-TF-----KPG 229 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhcC-cccCHHHHhhChhhhcC-CC-----CCC
Confidence 467789999999999999999999999874 349999999999876 45777776543332221 11 112
Q ss_pred HHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 010637 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTY 444 (505)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~~ 444 (505)
|.- .-....++.+...|-+.|+|.|...++..+|...
T Consensus 230 f~~--~~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a 266 (291)
T TIGR01505 230 FRI--DLHQKDLNLALDSAKAVGANLPNTATVQELFNTL 266 (291)
T ss_pred cch--HHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Confidence 222 2334567888899999999999999999877643
No 410
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.37 E-value=0.15 Score=51.07 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=56.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|++++... .++.+.... +|+||.++.-...
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T---------------------~dl~~~~k~---ADIvIsAvGkp~~ 214 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------------------TDLKSHTTK---ADILIVAVGKPNF 214 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC---------------------CCHHHHhhh---cCEEEEccCCcCc
Confidence 47999995 7899999999999999999986432 244555555 9999999987643
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+.. ..+++|.+|||.+...
T Consensus 215 i~~------~~vk~gavVIDvGin~ 233 (282)
T PRK14180 215 ITA------DMVKEGAVVIDVGINH 233 (282)
T ss_pred CCH------HHcCCCcEEEEecccc
Confidence 221 3478999999998653
No 411
>PRK07074 short chain dehydrogenase; Provisional
Probab=94.37 E-value=0.34 Score=47.20 Aligned_cols=84 Identities=13% Similarity=0.132 Sum_probs=53.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.|. |.+|..++..|+++|++|.+.+|++++.+.+.+.... .. ...+-.-+.+...
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~D~~~~~~ 63 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGD----------------AR---FVPVACDLTDAAS 63 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC----------------Cc---eEEEEecCCCHHH
Confidence 35778876 8999999999999999999999998877665542100 00 2223333344344
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+...++++.....+=+.||++...
T Consensus 64 ~~~~~~~~~~~~~~~d~vi~~ag~ 87 (257)
T PRK07074 64 LAAALANAAAERGPVDVLVANAGA 87 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 555555555444444667766543
No 412
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=94.36 E-value=0.3 Score=47.86 Aligned_cols=41 Identities=12% Similarity=0.249 Sum_probs=34.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
+++-|.|. |.+|..+|+.|++.|++|.+.+|+.++.+++.+
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~ 47 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEA 47 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 35666675 889999999999999999999999887766543
No 413
>PRK14851 hypothetical protein; Provisional
Probab=94.34 E-value=0.17 Score=56.98 Aligned_cols=125 Identities=15% Similarity=0.198 Sum_probs=71.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|+|+|+|-+|+.++.+|+..|. ++.++|.+.=....+..+... ....+-.-+...++.+..+ .+++-|.+.+..
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~i-nP~~~I~~~~~~ 121 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSI-NPFLEITPFPAG 121 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHh-CCCCeEEEEecC
Confidence 3589999999999999999999997 677888765333233221100 0000000011122222222 156666676654
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhH-HHHHHHHHHCCCeEEeCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNT-ERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t-~~~~~~l~~~gi~~i~~pvsG 135 (505)
-. .+-++.+ ++.-++|||+......++ ..+.+.+..+++-++.+++.|
T Consensus 122 i~-~~n~~~~---l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G 170 (679)
T PRK14851 122 IN-ADNMDAF---LDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLG 170 (679)
T ss_pred CC-hHHHHHH---HhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeccc
Confidence 22 2222333 445689999987643333 345566777889888876554
No 414
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.31 E-value=0.15 Score=51.19 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=57.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|++++... .++++.+.+ ||+||.++.-...
T Consensus 161 k~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T---------------------~~l~~~~~~---ADIvVsAvGkp~~ 216 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT---------------------RDLADYCSK---ADILVAAVGIPNF 216 (294)
T ss_pred CEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEccCCcCc
Confidence 47999996 7899999999999999999987432 245566666 9999999977643
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+.. ..+++|.+|||.+...
T Consensus 217 i~~------~~ik~gaiVIDVGin~ 235 (294)
T PRK14187 217 VKY------SWIKKGAIVIDVGINS 235 (294)
T ss_pred cCH------HHcCCCCEEEEecccc
Confidence 221 2477999999998654
No 415
>PRK07877 hypothetical protein; Provisional
Probab=94.27 E-value=0.16 Score=57.29 Aligned_cols=124 Identities=15% Similarity=0.170 Sum_probs=71.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|+|||+| +|+..|..|+..|. +++++|.+.=....+..........+..-+...++-+..+ .+++-|.+++..
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~i-np~i~v~~~~~~ 184 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAEL-DPYLPVEVFTDG 184 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHH-CCCCEEEEEecc
Confidence 3589999999 89999999999994 8899987753222222110000000000011222222222 267777777765
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg 136 (505)
-. .+.++++. ..-|+||||+-.. ..-..+.+.+.++++-+|.+...+|
T Consensus 185 i~-~~n~~~~l---~~~DlVvD~~D~~-~~R~~ln~~a~~~~iP~i~~~~~~g 232 (722)
T PRK07877 185 LT-EDNVDAFL---DGLDVVVEECDSL-DVKVLLREAARARRIPVLMATSDRG 232 (722)
T ss_pred CC-HHHHHHHh---cCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 32 33344443 3458999998864 2333345566777888777654444
No 416
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=94.25 E-value=0.35 Score=47.32 Aligned_cols=84 Identities=12% Similarity=0.124 Sum_probs=54.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+|-|.|. |.+|..+|+.|+++|++|.+.+|++++.++..++.... .. ...+..=+.+...
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---------------~~---~~~~~~Dv~d~~~ 62 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY---------------GE---VYAVKADLSDKDD 62 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---------------CC---ceEEEcCCCCHHH
Confidence 46888875 88999999999999999999999988766654431100 00 1122222334445
Q ss_pred HHHHHHHHHhcCCCCcEEEecCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (505)
++++++++...+.+=+++|++..
T Consensus 63 ~~~~~~~~~~~~g~id~li~naG 85 (259)
T PRK08340 63 LKNLVKEAWELLGGIDALVWNAG 85 (259)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 66666666655555567776544
No 417
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=94.25 E-value=0.38 Score=46.22 Aligned_cols=84 Identities=8% Similarity=0.060 Sum_probs=55.5
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+++-|.| .|.+|..++..|+++|+.|.+.+|++++.+.+..... .. ..++-.=+.+..
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~ 65 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELG-----------------ER---VKIFPANLSDRD 65 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC-----------------Cc---eEEEEccCCCHH
Confidence 35688887 5999999999999999999999999887666543210 00 222222233444
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.++.+++++.+.+.+=+.||++...
T Consensus 66 ~~~~~~~~~~~~~~~id~vi~~ag~ 90 (245)
T PRK12936 66 EVKALGQKAEADLEGVDILVNNAGI 90 (245)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5666666666655555778777654
No 418
>PRK06482 short chain dehydrogenase; Provisional
Probab=94.24 E-value=0.33 Score=47.96 Aligned_cols=83 Identities=11% Similarity=0.116 Sum_probs=54.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.| .|.+|..++..|++.|++|.+..|+++..+.+.+... .. ..++-.-+.+...
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 62 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYG-----------------DR---LWVLQLDVTDSAA 62 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc-----------------Cc---eEEEEccCCCHHH
Confidence 4677887 5999999999999999999999999887766544210 00 1222223334445
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++.+++++.+...+=++||+++..
T Consensus 63 ~~~~~~~~~~~~~~id~vi~~ag~ 86 (276)
T PRK06482 63 VRAVVDRAFAALGRIDVVVSNAGY 86 (276)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 566666555544444777776543
No 419
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=94.23 E-value=0.29 Score=49.21 Aligned_cols=106 Identities=16% Similarity=0.070 Sum_probs=74.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCC-CCCc---
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNL-ASLV--- 401 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~-~~ll--- 401 (505)
+.++.+|+++|.+.++.+..++|++.+.++. ++|...+.++.+.+. -+|+.++.... .|.. ...+
T Consensus 160 g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~------Gld~~~~~~~~~~~~-~~s~~~~~~~~----~~~~~~~~~~~~ 228 (288)
T TIGR01692 160 GAGQAAKICNNMLLGISMIGTAEAMALGEKL------GLDPKVLFEIANTSS-GRCWSSDTYNP----VPGVMPQAPASN 228 (288)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcCC-ccCcHHHHhCC----CccccccccccC
Confidence 4678899999999999999999999998753 399999999998763 35665442211 0000 0000
Q ss_pred -ccHHHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 010637 402 -VDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTY 444 (505)
Q Consensus 402 -~~~~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~~ 444 (505)
.++.| .+.-...+++.+...|-+.|+|+|....+...|...
T Consensus 229 ~~~~~f--~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a 270 (288)
T TIGR01692 229 GYQGGF--GTALMLKDLGLAQDAAKSAGAPTPLGALARQLYSLF 270 (288)
T ss_pred CCCCCc--chHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 01222 223445677899999999999999999998877543
No 420
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=94.22 E-value=0.21 Score=49.04 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=69.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEE--------eCChHHHHHHHHhhcccCC-C-C--------eeeeCCHHHHH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVY--------NRTTSKVDETLDRAHREGQ-L-P--------LTGHYTPRDFV 67 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~--------dr~~~~~~~l~~~~~~~g~-~-~--------i~~~~s~~e~v 67 (505)
-+++.|-|.|.+|...|+.|.+.|..|... |.+.-.++++.+.....+. + . ....++.+++.
T Consensus 32 g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il 111 (244)
T PF00208_consen 32 GKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEIL 111 (244)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGG
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEeccccccc
Confidence 357999999999999999999999887654 5554445555442111110 0 0 11111111444
Q ss_pred hhcCCCcEEEEEcCCCchHHHHHH-HHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 68 LSIQRPRSVIILVKAGSPVDQTIA-ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~v~~vl~-~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
.. ++|+++-|--.+....+.+. .+.+ .=++|+...|.... .+-...|.++|+.++.
T Consensus 112 ~~--~~DiliP~A~~~~I~~~~~~~~i~~---~akiIvegAN~p~t--~~a~~~L~~rGI~viP 168 (244)
T PF00208_consen 112 SV--DCDILIPCALGNVINEDNAPSLIKS---GAKIIVEGANGPLT--PEADEILRERGILVIP 168 (244)
T ss_dssp TS--SSSEEEEESSSTSBSCHHHCHCHHT---T-SEEEESSSSSBS--HHHHHHHHHTT-EEE-
T ss_pred cc--cccEEEEcCCCCeeCHHHHHHHHhc---cCcEEEeCcchhcc--HHHHHHHHHCCCEEEc
Confidence 32 49999998655433333333 2221 24789998888754 3333489999998774
No 421
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.19 E-value=0.13 Score=53.01 Aligned_cols=94 Identities=15% Similarity=0.202 Sum_probs=58.7
Q ss_pred CCcCCCCcEEEEcc-cHHHHHHHHHHHh-CCCc---EEEEeCC--hHHHHHHHHhhcccCCCCeeee-CCHHHHHhhcCC
Q 010637 1 MEASALSRIGLAGL-AVMGQNLALNVAE-KGFP---ISVYNRT--TSKVDETLDRAHREGQLPLTGH-YTPRDFVLSIQR 72 (505)
Q Consensus 1 m~~~~~~~IgIIGl-G~MG~~lA~~La~-~G~~---V~v~dr~--~~~~~~l~~~~~~~g~~~i~~~-~s~~e~v~~l~~ 72 (505)
|+.. .++|||||+ |..|.-|.+.|.+ ..++ +..+... ..+.-.+... .+.+. .+++++ ..
T Consensus 1 ~~~~-~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~-------~l~v~~~~~~~~-~~--- 68 (347)
T PRK06728 1 MSEK-GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGR-------EIIIQEAKINSF-EG--- 68 (347)
T ss_pred CCCC-CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCc-------ceEEEeCCHHHh-cC---
Confidence 4443 358999997 9999999999995 5677 4444322 2221111110 12221 244444 33
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 73 PRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 73 advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
.|++|+++|.+ ...++...+. ..|..|||.|+.+
T Consensus 69 ~Divf~a~~~~-~s~~~~~~~~---~~G~~VID~Ss~f 102 (347)
T PRK06728 69 VDIAFFSAGGE-VSRQFVNQAV---SSGAIVIDNTSEY 102 (347)
T ss_pred CCEEEECCChH-HHHHHHHHHH---HCCCEEEECchhh
Confidence 89999999986 4555554443 4689999998864
No 422
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.18 E-value=0.29 Score=46.94 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=31.5
Q ss_pred CCcCCCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 1 MEASALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 1 m~~~~~~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|...++++|-|+| .|.+|..++..|+++|++|.+..|+..
T Consensus 1 ~~~~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~ 41 (249)
T PRK12825 1 MGSLMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDE 41 (249)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCH
Confidence 5444456799997 499999999999999999887555543
No 423
>PRK06182 short chain dehydrogenase; Validated
Probab=94.16 E-value=0.39 Score=47.40 Aligned_cols=79 Identities=11% Similarity=0.214 Sum_probs=52.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.|. |.+|..++..|++.|++|.+.+|++++.+.+...+ ...+..=+.+...
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~-----------------------~~~~~~Dv~~~~~ 60 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLG-----------------------VHPLSLDVTDEAS 60 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCC-----------------------CeEEEeeCCCHHH
Confidence 46778885 99999999999999999999999988765543211 2233333344445
Q ss_pred HHHHHHHHHhcCCCCcEEEecCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (505)
++.+++.+.....+=+++|++..
T Consensus 61 ~~~~~~~~~~~~~~id~li~~ag 83 (273)
T PRK06182 61 IKAAVDTIIAEEGRIDVLVNNAG 83 (273)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 56666655554434466766654
No 424
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=94.16 E-value=0.56 Score=46.15 Aligned_cols=112 Identities=13% Similarity=0.053 Sum_probs=64.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.++-|+|.|..+..++..+...||+|+++|..++......-.+. .......+++....+...+.|+++.-+...=
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~t~vvi~th~h~~D 175 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPEDLPDGV-----ATLVTDEPEAEVAEAPPGSYFLVLTHDHALD 175 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccccCCCCc-----eEEecCCHHHHHhcCCCCcEEEEEeCChHHH
Confidence 57999999999999999999999999999977652211100000 1123345666666555567788777654322
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCC
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (505)
..++..+++..+.. -|=-.++ -....++.+.|.+.|+
T Consensus 176 ~~~L~~aL~~~~~~-YIG~lGS--r~k~~~~~~~L~~~G~ 212 (246)
T TIGR02964 176 LELCHAALRRGDFA-YFGLIGS--KTKRARFEHRLRARGV 212 (246)
T ss_pred HHHHHHHHhCCCCc-EEEEeCC--HHHHHHHHHHHHhcCC
Confidence 23445544221111 2222222 1345555666666554
No 425
>PLN00016 RNA-binding protein; Provisional
Probab=94.16 E-value=0.23 Score=51.89 Aligned_cols=37 Identities=19% Similarity=0.396 Sum_probs=33.1
Q ss_pred CCCcEEEE----c-ccHHHHHHHHHHHhCCCcEEEEeCChHH
Q 010637 5 ALSRIGLA----G-LAVMGQNLALNVAEKGFPISVYNRTTSK 41 (505)
Q Consensus 5 ~~~~IgII----G-lG~MG~~lA~~La~~G~~V~v~dr~~~~ 41 (505)
++++|-|+ | .|.+|..++..|.++||+|++.+|++..
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 45689999 6 5999999999999999999999998765
No 426
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=94.15 E-value=0.21 Score=52.66 Aligned_cols=124 Identities=15% Similarity=0.151 Sum_probs=68.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhc-ccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~-~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|-+|..+|.+|+..|. +++++|.+.=....+..+.. .....+-.-+....+.+..+ .+++-+.+.+..
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~-np~v~i~~~~~~ 120 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEI-NPLVNVRLHEFR 120 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHh-CCCcEEEEEecc
Confidence 3589999999999999999999997 68899877533333322110 00000000011112222221 256666655542
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
-..+ -+.+ .+..=++|||++-.. ..-..+.+.+...++-|+.+.+.|
T Consensus 121 i~~~-~~~~---~~~~~D~Vvd~~d~~-~~r~~ln~~~~~~~~p~v~~~~~g 167 (392)
T PRK07878 121 LDPS-NAVE---LFSQYDLILDGTDNF-ATRYLVNDAAVLAGKPYVWGSIYR 167 (392)
T ss_pred CChh-HHHH---HHhcCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEecc
Confidence 2111 1222 344558999987653 333335566677788888766554
No 427
>PRK06847 hypothetical protein; Provisional
Probab=94.15 E-value=0.059 Score=55.89 Aligned_cols=36 Identities=14% Similarity=0.304 Sum_probs=33.1
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
++.+|.|||.|.-|..+|..|++.|++|.+++++++
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 456899999999999999999999999999998864
No 428
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=94.15 E-value=0.44 Score=47.82 Aligned_cols=104 Identities=13% Similarity=0.176 Sum_probs=80.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHH-HHHhcCCCCCCCcccH
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIK-KAYQRNPNLASLVVDP 404 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~-~~~~~~~~~~~ll~~~ 404 (505)
+.++.+|+++|=+-.+.|++++|++.+-+++. +|.+.+.++-++| --+|+.++.-. ..++++ +++
T Consensus 165 G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~G------ld~~~~~~vi~~~-~~~s~~~e~~~~~m~~~~-------~~p 230 (286)
T COG2084 165 GAGQAAKLANNILLAGNIAALAEALALAEKAG------LDPDVVLEVISGG-AAGSWILENYGPRMLEGD-------FSP 230 (286)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CCHHHHHHHHhcc-ccCChHHHhhcchhhcCC-------CCc
Confidence 57899999999999999999999999988654 9999999998887 35788877632 233322 123
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 010637 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYR 445 (505)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~~~ 445 (505)
-| .++-...+++-+...|.+.|+|+|..+.+.+.|+...
T Consensus 231 ~F--~v~~~~KDl~la~~~A~~~g~~lP~~~~~~~ly~~~~ 269 (286)
T COG2084 231 GF--AVDLMLKDLGLALDAAKELGAPLPLTALAAELYAKAA 269 (286)
T ss_pred ch--hHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Confidence 33 2334566778889999999999999999999776543
No 429
>PRK07024 short chain dehydrogenase; Provisional
Probab=94.14 E-value=0.34 Score=47.39 Aligned_cols=85 Identities=16% Similarity=0.191 Sum_probs=55.4
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.| .|.+|..++..|+++|++|.+.+|++++.+++.+.... . . . ...+-+=+.+...
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--------~-~------~---~~~~~~Dl~~~~~ 64 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPK--------A-A------R---VSVYAADVRDADA 64 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccc--------C-C------e---eEEEEcCCCCHHH
Confidence 4677777 69999999999999999999999998877665442110 0 0 1 2233333333345
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+++.++++.....+-+++|++...
T Consensus 65 i~~~~~~~~~~~g~id~lv~~ag~ 88 (257)
T PRK07024 65 LAAAAADFIAAHGLPDVVIANAGI 88 (257)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCc
Confidence 666666665555445788876553
No 430
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=94.14 E-value=0.076 Score=54.46 Aligned_cols=38 Identities=21% Similarity=0.398 Sum_probs=33.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVD 43 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~ 43 (505)
+++|||||-|..|..|+..-.+-|++|++.|.+++.-.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA 38 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPA 38 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCch
Confidence 35799999999999999999999999999998877543
No 431
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=94.13 E-value=0.57 Score=50.02 Aligned_cols=74 Identities=9% Similarity=0.179 Sum_probs=50.2
Q ss_pred CcEEEEcccHH-HHHHHHHHHhC-----CCcEEEEeCChHHHHHHHH---hhcc-cC-CCCeeeeCCHHHHHhhcCCCcE
Q 010637 7 SRIGLAGLAVM-GQNLALNVAEK-----GFPISVYNRTTSKVDETLD---RAHR-EG-QLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgIIGlG~M-G~~lA~~La~~-----G~~V~v~dr~~~~~~~l~~---~~~~-~g-~~~i~~~~s~~e~v~~l~~adv 75 (505)
|||+|||.|.. +..+...|+.. +-+|+++|.++++.+.... +... .| .+++..+.+.+++++. +|+
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~g---ADf 77 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTD---ADF 77 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCC---CCE
Confidence 58999999875 22344445433 3589999999987655322 1111 01 1257888899998887 999
Q ss_pred EEEEcCCC
Q 010637 76 VIILVKAG 83 (505)
Q Consensus 76 Iil~vp~~ 83 (505)
||..+..+
T Consensus 78 Vi~~irvG 85 (437)
T cd05298 78 VFAQIRVG 85 (437)
T ss_pred EEEEeeeC
Confidence 99998665
No 432
>PRK06185 hypothetical protein; Provisional
Probab=94.12 E-value=0.065 Score=56.32 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=35.1
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|.+.+..+|.|||.|..|..+|..|+++|++|.++++++.
T Consensus 1 ~~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 1 MAEVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred CCccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 5455556899999999999999999999999999998753
No 433
>PRK05693 short chain dehydrogenase; Provisional
Probab=94.11 E-value=0.4 Score=47.30 Aligned_cols=80 Identities=16% Similarity=0.225 Sum_probs=53.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++-|.|. |.+|..+++.|++.|++|.+.+|++++.+.+...+ .+.+..=+.+...
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-----------------------~~~~~~Dl~~~~~ 58 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAAG-----------------------FTAVQLDVNDGAA 58 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCC-----------------------CeEEEeeCCCHHH
Confidence 35667775 99999999999999999999999987665443211 1222222334445
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++++++.+.....+=+++|++...
T Consensus 59 ~~~~~~~~~~~~~~id~vi~~ag~ 82 (274)
T PRK05693 59 LARLAEELEAEHGGLDVLINNAGY 82 (274)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666666665544444777777653
No 434
>PRK12829 short chain dehydrogenase; Provisional
Probab=94.11 E-value=0.34 Score=47.21 Aligned_cols=85 Identities=16% Similarity=0.199 Sum_probs=54.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|+|. |.+|..++..|+++|++|.+.+|+++..+.+.+.... . . ..++..=+.+...
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-----~-----------~---~~~~~~D~~~~~~ 72 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG-----A-----------K---VTATVADVADPAQ 72 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-----C-----------c---eEEEEccCCCHHH
Confidence 57888875 9999999999999999999999998766655433210 0 0 1122222223334
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+..+++++.+.+.+=+.||++....
T Consensus 73 ~~~~~~~~~~~~~~~d~vi~~ag~~ 97 (264)
T PRK12829 73 VERVFDTAVERFGGLDVLVNNAGIA 97 (264)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCC
Confidence 5556666655555567777766543
No 435
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.11 E-value=0.18 Score=50.49 Aligned_cols=74 Identities=12% Similarity=0.232 Sum_probs=56.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|++++... .++++.+.. +|+||.++.....
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t---------------------~~l~~~~~~---ADIvI~AvG~p~~ 214 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT---------------------KNLAELTKQ---ADILIVAVGKPKL 214 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc---------------------hhHHHHHHh---CCEEEEecCCCCc
Confidence 57999995 8899999999999999999986321 245556666 9999999976542
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGi~~ 233 (284)
T PRK14190 215 IT------ADMVKEGAVVIDVGVNR 233 (284)
T ss_pred CC------HHHcCCCCEEEEeeccc
Confidence 22 12468999999998654
No 436
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.10 E-value=0.38 Score=47.70 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=31.1
Q ss_pred CCcCCCCcEE-EEccc---HHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 1 MEASALSRIG-LAGLA---VMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 1 m~~~~~~~Ig-IIGlG---~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|++.+..|+. |.|.+ -+|..+|+.|++.|++|.+.+|+.+
T Consensus 1 ~~~~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~ 44 (271)
T PRK06505 1 MEGLMQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEA 44 (271)
T ss_pred CccccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchH
Confidence 5554444554 55876 6999999999999999999998754
No 437
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=94.10 E-value=0.29 Score=49.50 Aligned_cols=102 Identities=12% Similarity=0.086 Sum_probs=74.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHH-HH-HHHhcCCCCCCCccc
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDR-IK-KAYQRNPNLASLVVD 403 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~-i~-~~~~~~~~~~~ll~~ 403 (505)
+.++.+|.+.|-+..+.+...+|++.+.++. ++|...+.++.+.+. ..+..+.. .. .++..+. +
T Consensus 165 G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------Gld~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~-------~ 230 (296)
T PRK15461 165 GMGIRVKLINNYMSIALNALSAEAAVLCEAL------GLSFDVALKVMSGTA-AGKGHFTTTWPNKVLKGDL-------S 230 (296)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcCc-ccChHHHccccchhccCCC-------C
Confidence 4678899999999999999999999998854 399999999988762 33433332 21 1221111 2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 010637 404 PEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDT 443 (505)
Q Consensus 404 ~~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~ 443 (505)
+.| .++-...+++-+...|-+.|+|+|...++...|..
T Consensus 231 ~~f--~~~~~~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~ 268 (296)
T PRK15461 231 PAF--MIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQ 268 (296)
T ss_pred CCc--chHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 234 34455677899999999999999999999887654
No 438
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.08 E-value=0.35 Score=50.07 Aligned_cols=94 Identities=13% Similarity=0.125 Sum_probs=58.3
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeC---CHHHHH-hhc--CCCcEEEEEc
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHY---TPRDFV-LSI--QRPRSVIILV 80 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~---s~~e~v-~~l--~~advIil~v 80 (505)
+|.|+|+|.+|...+..+...|. +|.+.|+++++++...+.+... ..... +..+.+ +.. ..+|++|.|+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~----~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD----VVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe----EeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 69999999999998877777884 6778899999988776633221 11111 111111 111 2479999988
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.... .+++....+.++-.|+-.+..
T Consensus 247 G~~~----~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 247 GSPP----ALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CCHH----HHHHHHHHhcCCCEEEEEecc
Confidence 7433 344444555555555555444
No 439
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=94.04 E-value=0.19 Score=50.67 Aligned_cols=74 Identities=18% Similarity=0.302 Sum_probs=56.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.+||..|.++|..|++++.. +.++++.+.. +|+||.++.-...
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~---------------------T~nl~~~~~~---ADIvv~AvGk~~~ 223 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR---------------------TPDPESIVRE---ADIVIAAAGQAMM 223 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 57999996 678999999999999999999643 1256666666 9999999966422
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 224 i~------~~~vk~gavVIDvGin~ 242 (299)
T PLN02516 224 IK------GDWIKPGAAVIDVGTNA 242 (299)
T ss_pred cC------HHHcCCCCEEEEeeccc
Confidence 21 13578999999998754
No 440
>PRK06194 hypothetical protein; Provisional
Probab=93.99 E-value=0.41 Score=47.53 Aligned_cols=84 Identities=12% Similarity=0.130 Sum_probs=54.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCC
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~ 83 (505)
++|-|.| .|.+|..+++.|+++|++|.+.+|+.+..++..+.... .. .++.++. +.+.
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~~~D~~d~ 67 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRA----------------QG---AEVLGVRTDVSDA 67 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHh----------------cC---CeEEEEECCCCCH
Confidence 4577777 59999999999999999999999998766554432110 01 2332222 2333
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
..++.+++++.....+=++||++...
T Consensus 68 ~~~~~~~~~~~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 68 AQVEALADAALERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 45666666665554455788877654
No 441
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=93.98 E-value=0.8 Score=42.85 Aligned_cols=123 Identities=15% Similarity=0.131 Sum_probs=78.7
Q ss_pred EEEEc--ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeee-CCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 9 IGLAG--LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 9 IgIIG--lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~-~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+-=|| +|.++.-+| ++-..-+|+.++|+++.++........-|..++... .+..++...+.++|.||+-=. ..
T Consensus 38 l~DIGaGtGsi~iE~a--~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg--~~ 113 (187)
T COG2242 38 LWDIGAGTGSITIEWA--LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG--GN 113 (187)
T ss_pred EEEeCCCccHHHHHHH--HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC--CC
Confidence 34454 566666666 444556899999999987766544332211133332 233445556667999998765 46
Q ss_pred HHHHHHHHHhcCCCC-cEEEecCCCCchhHHHHHHHHHHCCC-eEEeCCCCCCH
Q 010637 86 VDQTIAALSEHMSPG-DCIIDGGNEWYLNTERRIHEASQKGL-LYLGMGVSGGE 137 (505)
Q Consensus 86 v~~vl~~l~~~l~~g-~iIId~st~~~~~t~~~~~~l~~~gi-~~i~~pvsGg~ 137 (505)
++.+++.....|++| .+|++..+. ++.....+.+++.|+ ..+-..++-+.
T Consensus 114 i~~ile~~~~~l~~ggrlV~naitl--E~~~~a~~~~~~~g~~ei~~v~is~~~ 165 (187)
T COG2242 114 IEEILEAAWERLKPGGRLVANAITL--ETLAKALEALEQLGGREIVQVQISRGK 165 (187)
T ss_pred HHHHHHHHHHHcCcCCeEEEEeecH--HHHHHHHHHHHHcCCceEEEEEeecce
Confidence 899999999888775 566666553 455556677888888 66655555443
No 442
>PRK08267 short chain dehydrogenase; Provisional
Probab=93.98 E-value=0.45 Score=46.46 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=35.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
+++-|+| .|.+|..++..|+++|++|.+.+|++++.+++..
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAA 43 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 4588887 5999999999999999999999999988777654
No 443
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=93.97 E-value=0.064 Score=56.53 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=31.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|+|.|||.|.+|.+.|..|+++|++|.++++...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 4799999999999999999999999999999754
No 444
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.97 E-value=0.21 Score=50.01 Aligned_cols=74 Identities=11% Similarity=0.236 Sum_probs=56.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHh--CCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAE--KGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~--~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+++.|||- ..+|.+||..|.+ ++..|+++... +.++++.+.. +|+||.++.-.
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~---------------------T~~l~~~~k~---ADIvV~AvGkp 214 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG---------------------TRDLAAHTRR---ADIIVAAAGVA 214 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC---------------------CCCHHHHHHh---CCEEEEecCCc
Confidence 57999995 7899999999998 68889988643 1256666666 99999999775
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
..+. ...+++|.+|||.+...
T Consensus 215 ~~i~------~~~ik~GavVIDvGin~ 235 (284)
T PRK14193 215 HLVT------ADMVKPGAAVLDVGVSR 235 (284)
T ss_pred CccC------HHHcCCCCEEEEccccc
Confidence 4322 13578999999998764
No 445
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=93.97 E-value=0.52 Score=49.26 Aligned_cols=124 Identities=13% Similarity=0.117 Sum_probs=68.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|.+|..++.+|+..|. ++.++|.+.=....+..+... ....+..-+....+-+..+ .+++-|...+..
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~-np~v~i~~~~~~ 119 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEI-QPDIRVNALRER 119 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHH-CCCCeeEEeeee
Confidence 3579999999999999999999996 899999885333232221000 0000000011122222222 155556665542
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
- ..+.+.+ .+..-|+|||++-.. ..-..+.+.+...++-++.+.+.|
T Consensus 120 i-~~~~~~~---~~~~~DlVid~~Dn~-~~r~~in~~~~~~~iP~v~~~~~g 166 (370)
T PRK05600 120 L-TAENAVE---LLNGVDLVLDGSDSF-ATKFLVADAAEITGTPLVWGTVLR 166 (370)
T ss_pred c-CHHHHHH---HHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEec
Confidence 1 1222223 344558999987763 333334456677788777765543
No 446
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.94 E-value=0.34 Score=47.38 Aligned_cols=88 Identities=15% Similarity=0.192 Sum_probs=52.1
Q ss_pred CCcCCCCc-EEEEccc---HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEE
Q 010637 1 MEASALSR-IGLAGLA---VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 1 m~~~~~~~-IgIIGlG---~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advI 76 (505)
|++.+..| +-|.|.+ -+|..+|+.|++.|++|.+.+|+. +.++..++. . . .. ...+
T Consensus 1 ~~~~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~~~~~~--------~--~------~~---~~~~ 60 (252)
T PRK06079 1 MSGILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKKSLQKL--------V--D------EE---DLLV 60 (252)
T ss_pred CccccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHHHHHhh--------c--c------Cc---eeEE
Confidence 66555434 5556874 799999999999999999999884 333222210 0 0 00 1122
Q ss_pred EEEcCCCchHHHHHHHHHhcCCCCcEEEecCC
Q 010637 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
-.=+.+.+.++++++.+.....+=|++|++..
T Consensus 61 ~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~nAg 92 (252)
T PRK06079 61 ECDVASDESIERAFATIKERVGKIDGIVHAIA 92 (252)
T ss_pred eCCCCCHHHHHHHHHHHHHHhCCCCEEEEccc
Confidence 22233445667777776655544467777654
No 447
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.88 E-value=0.2 Score=50.27 Aligned_cols=73 Identities=14% Similarity=0.257 Sum_probs=55.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|||- ..+|.++|..|.++|..|++++... .++++...+ +|+||.++.-...
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~~ATVtichs~T---------------------~~L~~~~~~---ADIvV~AvGkp~~ 215 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT---------------------HNLSSITSK---ADIVVAAIGSPLK 215 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEccCCCCc
Confidence 47999996 7799999999999999999886321 245566665 9999999976543
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+. ...+++|.+|||.+..
T Consensus 216 i~------~~~vk~GavVIDvGin 233 (288)
T PRK14171 216 LT------AEYFNPESIVIDVGIN 233 (288)
T ss_pred cC------HHHcCCCCEEEEeecc
Confidence 22 1347899999999865
No 448
>PRK07478 short chain dehydrogenase; Provisional
Probab=93.85 E-value=0.36 Score=46.98 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=34.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
+++-|.|. |.+|..+++.|+++|++|.+.+|++++.+++.+
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 48 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVA 48 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 35767775 899999999999999999999999887766654
No 449
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=93.84 E-value=0.64 Score=39.79 Aligned_cols=100 Identities=12% Similarity=0.184 Sum_probs=67.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC--
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG-- 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~-- 83 (505)
..||-|+|-|.++..+.+.+.+.|+++.+.+.+++..... +.. +|.++..=+..
T Consensus 2 ikkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s~~---------------------~~~---ad~~~~~~~~~~~ 57 (110)
T PF00289_consen 2 IKKVLIANRGEIAVRIIRALRELGIETVAVNSNPDTVSTH---------------------VDM---ADEAYFEPPGPSP 57 (110)
T ss_dssp SSEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGTTGHH---------------------HHH---SSEEEEEESSSGG
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCcceeccCchhccccc---------------------ccc---cccceecCcchhh
Confidence 4689999999999999999999999988877777542111 111 44443221221
Q ss_pred ---chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 84 ---SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 84 ---~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
..++.+++-... .|...+..+-+......++++.+.+.|+.|++.+
T Consensus 58 ~~yl~~e~I~~ia~~---~g~~~i~pGyg~lse~~~fa~~~~~~gi~fiGp~ 106 (110)
T PF00289_consen 58 ESYLNIEAIIDIARK---EGADAIHPGYGFLSENAEFAEACEDAGIIFIGPS 106 (110)
T ss_dssp GTTTSHHHHHHHHHH---TTESEEESTSSTTTTHHHHHHHHHHTT-EESSS-
T ss_pred hhhccHHHHhhHhhh---hcCcccccccchhHHHHHHHHHHHHCCCEEECcC
Confidence 345555544433 2667778888888888899999999999998764
No 450
>PRK06172 short chain dehydrogenase; Provisional
Probab=93.84 E-value=0.38 Score=46.74 Aligned_cols=41 Identities=27% Similarity=0.305 Sum_probs=34.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
++|-|.|. |.+|..++..|++.|++|.+.+|++++.+++.+
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVA 49 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 46778875 899999999999999999999999887665543
No 451
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.83 E-value=0.78 Score=49.00 Aligned_cols=113 Identities=14% Similarity=0.163 Sum_probs=67.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChHH--HHHHHHhhcccCCCCeeee-CCHHHHHhhcCCCcEEEEEc-
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSK--VDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIILV- 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~--G~~V~v~dr~~~~--~~~l~~~~~~~g~~~i~~~-~s~~e~v~~l~~advIil~v- 80 (505)
++|.|||+|..|.+-+..|.+. |++|+++|..+.. .+.+.+ +. .+... .+++. +.. +|+||.+-
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~-----~~~~g~~~~~~-~~~---~d~vV~Spg 77 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DV-----ELHSGGWNLEW-LLE---ADLVVTNPG 77 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CC-----EEEeCCCChHH-hcc---CCEEEECCC
Confidence 5799999999999999999887 5899999976532 223322 21 12222 23333 343 89887754
Q ss_pred -CCCch-HHHHH---------HHHHh-cCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE
Q 010637 81 -KAGSP-VDQTI---------AALSE-HMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 81 -p~~~~-v~~vl---------~~l~~-~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (505)
|.+.+ +.... -+++. .+....|-|.+|++...++.-+...+...|....
T Consensus 78 I~~~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~ 138 (438)
T PRK04663 78 IALATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKVA 138 (438)
T ss_pred CCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEE
Confidence 33222 22221 13332 2333456677777776666667777777776443
No 452
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=93.83 E-value=0.39 Score=46.60 Aligned_cols=94 Identities=16% Similarity=0.167 Sum_probs=65.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEE-----c
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIIL-----V 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~-----v 80 (505)
++|.=||+| |..|+.-||+.|.+|++.|.+++.++.........| ..+ -...+.+|+.+.=.+-|+|+.+ |
T Consensus 61 ~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~g-v~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 61 LRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESG-VNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcc-ccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 468889998 779999999999999999999988776654433221 111 1234666766532447988876 3
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEec
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDG 106 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~ 106 (505)
|+. +.++..+...++||-+++..
T Consensus 138 ~dp---~~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 138 PDP---ESFLRACAKLVKPGGILFLS 160 (243)
T ss_pred CCH---HHHHHHHHHHcCCCcEEEEe
Confidence 443 45677777888888777653
No 453
>PRK06500 short chain dehydrogenase; Provisional
Probab=93.82 E-value=0.51 Score=45.54 Aligned_cols=41 Identities=12% Similarity=0.197 Sum_probs=34.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
++|-|.|. |.+|..++..|+++|++|.+.+|+.++.+++.+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~ 48 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARA 48 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHH
Confidence 46778875 999999999999999999999999876655443
No 454
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.80 E-value=0.22 Score=49.71 Aligned_cols=74 Identities=16% Similarity=0.225 Sum_probs=56.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|+++.... .++++...+ ||+||.++.-..-
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~AtVtichs~T---------------------~nl~~~~~~---ADIvI~AvGk~~~ 213 (282)
T PRK14182 158 KRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT---------------------ADLAGEVGR---ADILVAAIGKAEL 213 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEecCCcCc
Confidence 47999995 7899999999999999999985331 245566666 9999999976532
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 214 i~------~~~ik~gaiVIDvGin~ 232 (282)
T PRK14182 214 VK------GAWVKEGAVVIDVGMNR 232 (282)
T ss_pred cC------HHHcCCCCEEEEeecee
Confidence 22 13478999999998754
No 455
>PRK07109 short chain dehydrogenase; Provisional
Probab=93.80 E-value=0.42 Score=49.09 Aligned_cols=83 Identities=14% Similarity=0.208 Sum_probs=55.4
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--EcCCCc
Q 010637 8 RIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAGS 84 (505)
Q Consensus 8 ~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~~~ 84 (505)
.|-|.|. |-+|..+++.|++.|++|.+.+|++++.+++.++.... . .++.++ =+.+..
T Consensus 10 ~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~----------------g---~~~~~v~~Dv~d~~ 70 (334)
T PRK07109 10 VVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAA----------------G---GEALAVVADVADAE 70 (334)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc----------------C---CcEEEEEecCCCHH
Confidence 4667775 99999999999999999999999988776655432100 0 223222 233444
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.++.+++.+...+.+=+++|++...
T Consensus 71 ~v~~~~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 71 AVQAAADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCc
Confidence 5666666666655555788876553
No 456
>PRK07890 short chain dehydrogenase; Provisional
Probab=93.74 E-value=0.38 Score=46.76 Aligned_cols=86 Identities=17% Similarity=0.241 Sum_probs=55.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.| .|.+|..+|..|+++|++|.+.+|+++..+.+.+..... . .+...+..-+.+.+.
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~-~~~~~~~~D~~~~~~ 68 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL----------------G-RRALAVPTDITDEDQ 68 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh----------------C-CceEEEecCCCCHHH
Confidence 4677787 499999999999999999999999987766554432100 0 001223333344455
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++.+++.+.+.+.+=+.||++...
T Consensus 69 ~~~~~~~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 69 CANLVALALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHHHHHHHHcCCccEEEECCcc
Confidence 666776666555555777776643
No 457
>PRK06153 hypothetical protein; Provisional
Probab=93.73 E-value=0.43 Score=49.72 Aligned_cols=118 Identities=9% Similarity=0.064 Sum_probs=62.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhh-c-ccCCCCe--eeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRA-H-REGQLPL--TGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~-~-~~g~~~i--~~~~s~~e~v~~l~~advIil~vp 81 (505)
.+|+|||+|-.|+.++..|++.|. ++.++|.+.=....+.... . .....+- .-+...++.+..+. +++ .+.+
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in-~~I--~~~~ 253 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMR-RGI--VPHP 253 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhC-CeE--EEEe
Confidence 589999999999999999999997 7888887742211111110 0 0000000 00111222222221 343 3333
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCC
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGV 133 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pv 133 (505)
.. .-.+.+. .+..=++|++|.-... .-..+.+.+...++-|+++++
T Consensus 254 ~~-I~~~n~~----~L~~~DiV~dcvDn~~-aR~~ln~~a~~~gIP~Id~G~ 299 (393)
T PRK06153 254 EY-IDEDNVD----ELDGFTFVFVCVDKGS-SRKLIVDYLEALGIPFIDVGM 299 (393)
T ss_pred ec-CCHHHHH----HhcCCCEEEEcCCCHH-HHHHHHHHHHHcCCCEEEeee
Confidence 22 1112222 2445589999877543 222344566777888888764
No 458
>PRK06720 hypothetical protein; Provisional
Probab=93.72 E-value=0.53 Score=43.48 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=30.9
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHH
Q 010637 9 IGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (505)
Q Consensus 9 IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~ 46 (505)
+-|.|. |.+|.+++..|+++|++|.+++|+.+..+...
T Consensus 19 ~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~ 57 (169)
T PRK06720 19 AIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATV 57 (169)
T ss_pred EEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 555676 56999999999999999999999987655443
No 459
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=93.71 E-value=0.3 Score=48.28 Aligned_cols=115 Identities=18% Similarity=0.126 Sum_probs=85.9
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 5 ALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 5 ~~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+..|+-|-|. |.+|+.....+.+.|.. .+-..+|.+--... .++.++++.+|+++.. .+|+-++.||+.
T Consensus 7 k~tkvivqGitg~~gtfh~~~~l~yGt~-~V~GvtPgkgG~~~--------~g~PVf~tV~EA~~~~-~a~~svI~Vp~~ 76 (293)
T COG0074 7 KDTKVIVQGITGKQGTFHTEQMLAYGTK-IVGGVTPGKGGQTI--------LGLPVFNTVEEAVKET-GANASVIFVPPP 76 (293)
T ss_pred CCCeEEEeccccccchHHHHHHHHhCCc-eeecccCCCCceEE--------cCccHHHHHHHHHHhh-CCCEEEEecCcH
Confidence 3467888995 99999999999999987 33344554321110 1356788999999886 799999999998
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (505)
.+.+.+++.+...+ ..+++-+-+....|+.++.++++++|...+++
T Consensus 77 ~aadai~EAida~i--~liv~ITEgIP~~D~~~~~~~a~~~g~~iiGP 122 (293)
T COG0074 77 FAADAILEAIDAGI--KLVVIITEGIPVLDMLELKRYAREKGTRLIGP 122 (293)
T ss_pred HHHHHHHHHHhCCC--cEEEEEeCCCCHHHHHHHHHHHHhcCCEEECC
Confidence 77777777665543 24666667788888999999999999888874
No 460
>PRK08643 acetoin reductase; Validated
Probab=93.69 E-value=0.37 Score=46.90 Aligned_cols=83 Identities=11% Similarity=0.226 Sum_probs=54.2
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE--EEcCCCc
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI--ILVKAGS 84 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi--l~vp~~~ 84 (505)
++-|+| .|.+|..++..|+++|++|.+.+|++++.+.+....... . .++.+ .-+.+..
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~Dl~~~~ 64 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKD----------------G---GKAIAVKADVSDRD 64 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CeEEEEECCCCCHH
Confidence 456666 589999999999999999999999988766654431100 0 12222 2234444
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.++++++++.....+=+++|++...
T Consensus 65 ~~~~~~~~~~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 65 QVFAAVRQVVDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5666676666555555778877654
No 461
>PRK05868 hypothetical protein; Validated
Probab=93.66 E-value=0.076 Score=55.40 Aligned_cols=35 Identities=17% Similarity=0.428 Sum_probs=32.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|++|.|||.|..|..+|..|+++|++|.++++.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 46899999999999999999999999999999875
No 462
>PRK07825 short chain dehydrogenase; Provisional
Probab=93.64 E-value=0.57 Score=46.13 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=35.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
++|-|.|. |.+|..+++.|+++|++|.+.+|++++.+++.+
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 47 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAA 47 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 46778875 999999999999999999999999988766543
No 463
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=93.60 E-value=0.46 Score=46.25 Aligned_cols=86 Identities=12% Similarity=0.142 Sum_probs=54.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.|. |.+|..++..|+++|++|.+++|+++..+.+.++.... -.. .+.+..-+.+...
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~~~~~ 74 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAA--------------GGA---AEALAFDIADEEA 74 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhc--------------CCc---eEEEEccCCCHHH
Confidence 45777775 99999999999999999999999987766554321100 000 2222223344445
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+..+++++...+.+=+.+|.+...
T Consensus 75 ~~~~~~~~~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 75 VAAAFARIDAEHGRLDILVNNVGA 98 (256)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666666665544444667766543
No 464
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=93.58 E-value=0.4 Score=50.05 Aligned_cols=108 Identities=13% Similarity=0.164 Sum_probs=66.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH------------------HHHHHHHhhcccCCCCeeeeCCHHHHHh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS------------------KVDETLDRAHREGQLPLTGHYTPRDFVL 68 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~------------------~~~~l~~~~~~~g~~~i~~~~s~~e~v~ 68 (505)
.+|+|=|.|++|..+|+.|.+.|.+|.+++-+.. +...+.... +.+.... +++..
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~------ga~~i~~-~e~~~ 280 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYA------GAEYITN-EELLE 280 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhc------CceEccc-ccccc
Confidence 5899999999999999999999999998876654 111111110 1233323 34433
Q ss_pred hcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
. .||+.+=|--.+....+-+.. |.. ++|+...|.. .|.+..+.+.++|+.|+.
T Consensus 281 ~--~cDIl~PcA~~n~I~~~na~~----l~a-k~V~EgAN~P--~t~eA~~i~~erGIl~~P 333 (411)
T COG0334 281 V--DCDILIPCALENVITEDNADQ----LKA-KIVVEGANGP--TTPEADEILLERGILVVP 333 (411)
T ss_pred c--cCcEEcccccccccchhhHHH----hhh-cEEEeccCCC--CCHHHHHHHHHCCCEEcC
Confidence 2 378776655443322223333 322 3888888875 445666667789987764
No 465
>PRK06753 hypothetical protein; Provisional
Probab=93.57 E-value=0.082 Score=54.83 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=32.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|+|.|||.|.-|..+|..|+++|++|.++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 5899999999999999999999999999998875
No 466
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=93.57 E-value=0.11 Score=40.38 Aligned_cols=30 Identities=20% Similarity=0.522 Sum_probs=27.4
Q ss_pred EEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 11 LAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 11 IIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|||.|.-|...|..|+++|++|.++++++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999998864
No 467
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.55 E-value=0.69 Score=46.00 Aligned_cols=94 Identities=14% Similarity=0.156 Sum_probs=57.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhc---CCCcEEEEEcCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSI---QRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l---~~advIil~vp~ 82 (505)
.+|.|+|.|.+|...++.+...|.+ |.+.++++++.+.+.+.+... +....+..+.+..+ ...|++|-++..
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~----~i~~~~~~~~~~~~~~~~g~d~vid~~G~ 197 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATA----LAEPEVLAERQGGLQNGRGVDVALEFSGA 197 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcE----ecCchhhHHHHHHHhCCCCCCEEEECCCC
Confidence 3689999999999998888888987 888899988877666544321 11111222222222 247888888765
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
...++. ....+.++-.++..+.
T Consensus 198 ~~~~~~----~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 198 TAAVRA----CLESLDVGGTAVLAGS 219 (280)
T ss_pred hHHHHH----HHHHhcCCCEEEEecc
Confidence 433333 3344555555555443
No 468
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=93.55 E-value=0.29 Score=48.79 Aligned_cols=99 Identities=13% Similarity=0.208 Sum_probs=52.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChHHHHHHHHhhc-----ccCCCCeee-eCCHHHHHhhcCCCcEEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAH-----REGQLPLTG-HYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~~~-----~~g~~~i~~-~~s~~e~v~~l~~advIil 78 (505)
.+|.+||.|.+-...-.-...+ |..|..+|++++..+...+... .. ++.. +.+..++...++..|+|++
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~---~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSK---RMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-S---SEEEEES-GGGG-GG----SEEEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccC---CeEEEecchhccccccccCCEEEE
Confidence 4899999999976544333333 4568899999987654432211 11 2333 3444445455666899999
Q ss_pred EcCCC---chHHHHHHHHHhcCCCCcEEEecCC
Q 010637 79 LVKAG---SPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 79 ~vp~~---~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
+.-.+ ..=.++++.|...+++|..|+--+.
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 87665 2346788999999999998876543
No 469
>PRK07063 short chain dehydrogenase; Provisional
Probab=93.52 E-value=0.43 Score=46.58 Aligned_cols=84 Identities=19% Similarity=0.273 Sum_probs=53.9
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcE--EEEEcCCCc
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRS--VIILVKAGS 84 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~adv--Iil~vp~~~ 84 (505)
++-|.| .|.+|..+++.|+++|++|.+.+|++++.+++.++.... ... .++ +..=+.+..
T Consensus 9 ~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~~~Dl~~~~ 71 (260)
T PRK07063 9 VALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARD--------------VAG---ARVLAVPADVTDAA 71 (260)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------cCC---ceEEEEEccCCCHH
Confidence 466666 589999999999999999999999988777665432100 000 222 222233444
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st 108 (505)
.++..++++.....+=+++|++..
T Consensus 72 ~~~~~~~~~~~~~g~id~li~~ag 95 (260)
T PRK07063 72 SVAAAVAAAEEAFGPLDVLVNNAG 95 (260)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCC
Confidence 566666666655545577777654
No 470
>PRK05866 short chain dehydrogenase; Provisional
Probab=93.50 E-value=0.4 Score=48.16 Aligned_cols=86 Identities=22% Similarity=0.265 Sum_probs=55.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.|. |.+|..+|..|+++|++|.+.+|+.++.+++.+..... -.. ...+-.-+.+...
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~--------------~~~---~~~~~~Dl~d~~~ 103 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRA--------------GGD---AMAVPCDLSDLDA 103 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--------------CCc---EEEEEccCCCHHH
Confidence 45777775 99999999999999999999999988776665432100 000 1222222333345
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++.+++.+...+.+=+++|++...
T Consensus 104 v~~~~~~~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 104 VDALVADVEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 666666666555555777776543
No 471
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=93.50 E-value=0.94 Score=45.62 Aligned_cols=106 Identities=17% Similarity=0.021 Sum_probs=67.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch-
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP- 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~- 85 (505)
++|+|||--.=-..+++.|+++|++|.+|.-.... ..+. ++..+++.++.++. +|+||+++|-...
T Consensus 2 ~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~-~~~~---------~~~~~~~~~~~~~~---~~~~i~p~~~~~~~ 68 (287)
T TIGR02853 2 IHIAVIGGDARQLELIRKLEELDAKISLIGFDQLE-DGFT---------GAVKCELLELDLTT---LDVVILPVPGTSHD 68 (287)
T ss_pred cEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccc-cccc---------cceeecchhhhhcc---CCEEEECCccccCC
Confidence 47999998888899999999999999998755310 0011 24556677765665 9999999983221
Q ss_pred --HHHH-------H-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 86 --VDQT-------I-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 86 --v~~v-------l-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
+..+ + ++++..++++.++.-+ ... . .+...++++|+.+++
T Consensus 69 ~~i~~~~~~~~~~l~~~~l~~~~~~~~~~~G-~~~-~---~l~~~a~~~gi~v~~ 118 (287)
T TIGR02853 69 GKVATVFSNEKVVLTPELLESTKGHCTIYVG-ISN-P---YLEQLAADAGVKLIE 118 (287)
T ss_pred ceEecccccCCccccHHHHHhcCCCCEEEEe-cCC-H---HHHHHHHHCCCeEEE
Confidence 1211 1 4566667665554433 222 1 223366778888774
No 472
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.46 E-value=0.088 Score=56.24 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=33.8
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 4 SALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 4 ~~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
.+.++|+|||+|.-|.+.|++|.+.|++|.++.|+..
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD 40 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence 3456899999999999999999999999999999875
No 473
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.43 E-value=0.66 Score=46.18 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=67.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChHHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G-~~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|+|+|-+|...|.+|++.| -+++++|.+.-....+..+... ....+-.-+....+-+..+ .+++-+..++..
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~I-NP~~~V~~i~~~ 108 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQI-NPECRVTVVDDF 108 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhH-CCCcEEEEEecc
Confidence 357999999999999999999999 5899998775433222211000 0000000000111222211 156656565432
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
- ..+-++.+.. ..-|+|||+.-.. .....+.+.+.+.++.|+.++
T Consensus 109 i-~~e~~~~ll~--~~~D~VIdaiD~~-~~k~~L~~~c~~~~ip~I~~g 153 (268)
T PRK15116 109 I-TPDNVAEYMS--AGFSYVIDAIDSV-RPKAALIAYCRRNKIPLVTTG 153 (268)
T ss_pred c-ChhhHHHHhc--CCCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 1 1222233321 2358999986543 334456777888888888663
No 474
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=93.42 E-value=0.26 Score=50.75 Aligned_cols=74 Identities=20% Similarity=0.280 Sum_probs=56.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|+++... +.++++.+.+ +|+||.++.-...
T Consensus 232 K~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~---------------------T~nl~~~~r~---ADIVIsAvGkp~~ 287 (364)
T PLN02616 232 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---------------------TKNPEEITRE---ADIIISAVGQPNM 287 (364)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCeEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 47999995 789999999999999999998532 1356666666 9999999977543
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+.. ..+++|.+|||.+...
T Consensus 288 i~~------d~vK~GAvVIDVGIn~ 306 (364)
T PLN02616 288 VRG------SWIKPGAVVIDVGINP 306 (364)
T ss_pred CCH------HHcCCCCEEEeccccc
Confidence 221 3478999999998654
No 475
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=93.41 E-value=0.16 Score=53.14 Aligned_cols=36 Identities=28% Similarity=0.492 Sum_probs=32.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK 41 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~ 41 (505)
|++|||||.|..|..|+....+.|++|.++|.+++.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~ 37 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDS 37 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 458999999999999999999999999999988654
No 476
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=93.41 E-value=0.094 Score=55.03 Aligned_cols=34 Identities=21% Similarity=0.423 Sum_probs=31.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCCh
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTT 39 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~--G~~V~v~dr~~ 39 (505)
+.+|.|||.|.+|.++|..|++. |++|+++|+.+
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 45899999999999999999998 99999999875
No 477
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.39 E-value=0.51 Score=49.91 Aligned_cols=108 Identities=15% Similarity=0.076 Sum_probs=63.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~~ 84 (505)
|+|.|+|+|.-|.++|+.|. .|++|+++|..+.... ..+. ++... . .+... .+.+|+||.. +|.+.
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~-------gi~~~-~-~~~~~-~~~~d~vv~sp~i~~~~ 68 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEE-------GNLLL-P-SNDFD-PNKSDLEIPSPGIPPSH 68 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhc-------CCEEe-c-HHHcC-cCCCCEEEECCCCCCCC
Confidence 57999999999999999999 9999999996643211 1111 13332 2 22221 1237877765 34432
Q ss_pred h-H---HHHHH--HHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCC
Q 010637 85 P-V---DQTIA--ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 85 ~-v---~~vl~--~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (505)
+ + ++++. +++..+.+..|-|.+|++...++.-+...+...|.
T Consensus 69 ~~~~~a~~i~~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~~g~ 116 (401)
T PRK03815 69 PLIQKAKNLISEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLEDFGA 116 (401)
T ss_pred HHHHHHHHHhhHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHHCCC
Confidence 2 2 22221 22222223356677777777666667777877663
No 478
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=93.38 E-value=0.086 Score=53.49 Aligned_cols=34 Identities=21% Similarity=0.407 Sum_probs=29.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
.+|.|||.|.-|..+|..|+++|++|.++++++.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 3699999999999999999999999999999875
No 479
>PRK06057 short chain dehydrogenase; Provisional
Probab=93.38 E-value=0.63 Score=45.35 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=34.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
++|-|+|. |.+|..+++.|+++|++|.+.+|++.+.+...+
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAAD 49 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 46888887 999999999999999999999999876555443
No 480
>PRK08589 short chain dehydrogenase; Validated
Probab=93.35 E-value=0.59 Score=46.17 Aligned_cols=85 Identities=15% Similarity=0.220 Sum_probs=54.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++-|.|. |.+|..+|+.|+++|++|.+.+|+ ++.+++.++.... -.. ...+.+=+.+...
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~~~~~ 68 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSN--------------GGK---AKAYHVDISDEQQ 68 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhc--------------CCe---EEEEEeecCCHHH
Confidence 35666675 899999999999999999999999 6555544321100 000 2233333445556
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++.+++.+...+.+=+++|++...
T Consensus 69 ~~~~~~~~~~~~g~id~li~~Ag~ 92 (272)
T PRK08589 69 VKDFASEIKEQFGRVDVLFNNAGV 92 (272)
T ss_pred HHHHHHHHHHHcCCcCEEEECCCC
Confidence 677777776655555778877543
No 481
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.34 E-value=0.14 Score=40.83 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=30.9
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
||.|||.|..|.-+|..|++.|.+|+++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 588999999999999999999999999998874
No 482
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.31 E-value=1.1 Score=48.27 Aligned_cols=111 Identities=16% Similarity=0.081 Sum_probs=66.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH-H---HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc--
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-K---VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV-- 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~-~---~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v-- 80 (505)
++|+|+|+|.-|.+.|+.|.+.|.+|.++|.++. . ..++.+.+. ........+.... +|+||.+-
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~---~d~vV~SpgI 79 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAAL------LVETEASAQRLAA---FDVVVKSPGI 79 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCE------EEeCCCChHHccC---CCEEEECCCC
Confidence 5799999999999999999999999999995432 1 123332110 1112222333343 89888764
Q ss_pred CCCch-HHHHH---------HHH-Hhc-CC-----CCcEEEecCCCCchhHHHHHHHHHHCCC
Q 010637 81 KAGSP-VDQTI---------AAL-SEH-MS-----PGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 81 p~~~~-v~~vl---------~~l-~~~-l~-----~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (505)
|...+ +.... -++ ... .. +..|-|.+|++...++.-+...|...|.
T Consensus 80 ~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 142 (468)
T PRK04690 80 SPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAGH 142 (468)
T ss_pred CCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 33322 22211 122 111 21 2356677788877777777778877664
No 483
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=93.30 E-value=0.75 Score=45.22 Aligned_cols=112 Identities=16% Similarity=0.216 Sum_probs=70.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChHHHHHHHHhhcccCCC--CeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKVDETLDRAHREGQL--PLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~-V~v~dr~~~~~~~l~~~~~~~g~~--~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
.+|--||+|. | .++..+++.|.. |+++|.++..++...+.....+ . .+..... +. ..|+|+..+..
T Consensus 121 ~~VLDiGcGs-G-~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~-~~~~~~~~~~--~~-----~fD~Vvani~~- 189 (250)
T PRK00517 121 KTVLDVGCGS-G-ILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNG-VELNVYLPQG--DL-----KADVIVANILA- 189 (250)
T ss_pred CEEEEeCCcH-H-HHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC-CCceEEEccC--CC-----CcCEEEEcCcH-
Confidence 4688999998 6 455667777765 9999999998876655432211 0 1111110 00 26888866544
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
..+..++..+...+++|..++-.+ ........+.+.+.+.|...+.
T Consensus 190 ~~~~~l~~~~~~~LkpgG~lilsg-i~~~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 190 NPLLELAPDLARLLKPGGRLILSG-ILEEQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEE-CcHhhHHHHHHHHHHCCCEEEE
Confidence 356677788888898877666433 3334555666777777776654
No 484
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.28 E-value=0.31 Score=48.82 Aligned_cols=74 Identities=14% Similarity=0.257 Sum_probs=55.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC----CCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEK----GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~----G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
++|.|||- ..+|.++|..|.++ +..|+++... +.++++.+.. +|+||.++.
T Consensus 154 k~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~---------------------T~~l~~~~~~---ADIvV~AvG 209 (287)
T PRK14181 154 RHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ---------------------SENLTEILKT---ADIIIAAIG 209 (287)
T ss_pred CEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccC
Confidence 57999996 77999999999988 6788887532 1245566666 999999997
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
-..-+. ...+++|.+|||.+...
T Consensus 210 ~p~~i~------~~~ik~GavVIDvGin~ 232 (287)
T PRK14181 210 VPLFIK------EEMIAEKAVIVDVGTSR 232 (287)
T ss_pred CcCccC------HHHcCCCCEEEEecccc
Confidence 653322 13478999999998754
No 485
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=93.27 E-value=0.26 Score=48.99 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=57.5
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG-~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|||-+ .+|.+|+..|..+++.|++++... .++.+..++ +|+++.++--...
T Consensus 157 k~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T---------------------~~l~~~~k~---ADIvv~AvG~p~~ 212 (283)
T COG0190 157 KNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT---------------------KDLASITKN---ADIVVVAVGKPHF 212 (283)
T ss_pred CEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC---------------------CCHHHHhhh---CCEEEEecCCccc
Confidence 479999975 579999999999999999997442 244555555 9999999966543
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCc
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~ 111 (505)
++ .+.+.+|.++||.+....
T Consensus 213 i~------~d~vk~gavVIDVGinrv 232 (283)
T COG0190 213 IK------ADMVKPGAVVIDVGINRV 232 (283)
T ss_pred cc------cccccCCCEEEecCCccc
Confidence 33 346789999999987643
No 486
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=93.25 E-value=0.28 Score=50.20 Aligned_cols=74 Identities=19% Similarity=0.251 Sum_probs=56.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|+++.... .++++.... +|+||.++.-..-
T Consensus 215 K~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T---------------------~nl~~~~~~---ADIvIsAvGkp~~ 270 (345)
T PLN02897 215 KNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT---------------------KDPEQITRK---ADIVIAAAGIPNL 270 (345)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC---------------------CCHHHHHhh---CCEEEEccCCcCc
Confidence 47999995 7789999999999999999885321 245566666 9999999977543
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 271 v~------~d~vk~GavVIDVGin~ 289 (345)
T PLN02897 271 VR------GSWLKPGAVVIDVGTTP 289 (345)
T ss_pred cC------HHHcCCCCEEEEccccc
Confidence 22 13478999999998754
No 487
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=93.24 E-value=0.29 Score=49.97 Aligned_cols=86 Identities=15% Similarity=0.188 Sum_probs=63.5
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchHH
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVD 87 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~ 87 (505)
++-|.|.|..|+..|.++...|-+|.|++.+|-+.-+..-.| +++ ...+|++.. +|++|.++-.-
T Consensus 211 ~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdG-------f~V-~~m~~Aa~~---gDifiT~TGnk---- 275 (420)
T COG0499 211 NVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDG-------FRV-MTMEEAAKT---GDIFVTATGNK---- 275 (420)
T ss_pred eEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcC-------cEE-EEhHHhhhc---CCEEEEccCCc----
Confidence 577889999999999999999999999999997654444332 443 356777776 89999887553
Q ss_pred HHH-HHHHhcCCCCcEEEecCC
Q 010637 88 QTI-AALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 88 ~vl-~~l~~~l~~g~iIId~st 108 (505)
+|+ .+-...++.|.|+.+.+.
T Consensus 276 dVi~~eh~~~MkDgaIl~N~GH 297 (420)
T COG0499 276 DVIRKEHFEKMKDGAILANAGH 297 (420)
T ss_pred CccCHHHHHhccCCeEEecccc
Confidence 344 233445778888887764
No 488
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.24 E-value=0.45 Score=46.37 Aligned_cols=125 Identities=13% Similarity=0.087 Sum_probs=69.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|+|+|.+|..++.+|++.|. +++++|.+.=....+..+... ....+-.-+....+-+..+ .|++-+..++..
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~i-nP~~~V~~~~~~ 89 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDI-NPECEVDAVEEF 89 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHH-CCCcEEEEeeee
Confidence 3589999999999999999999997 788998775332222211100 0000000011112222222 156666665442
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
...+.+..+. ...-++|||+.-.. .....+.+.+.+.++.++.+.-.|
T Consensus 90 -i~~~~~~~l~--~~~~D~VvdaiD~~-~~k~~L~~~c~~~~ip~I~s~g~g 137 (231)
T cd00755 90 -LTPDNSEDLL--GGDPDFVVDAIDSI-RAKVALIAYCRKRKIPVISSMGAG 137 (231)
T ss_pred -cCHhHHHHHh--cCCCCEEEEcCCCH-HHHHHHHHHHHHhCCCEEEEeCCc
Confidence 1112223332 12358999986554 334456677778888888764333
No 489
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=93.22 E-value=0.21 Score=51.96 Aligned_cols=93 Identities=15% Similarity=0.232 Sum_probs=54.3
Q ss_pred CcEEEEcc-cHHHHHHHH-HHHhCCCc---EEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAGL-AVMGQNLAL-NVAEKGFP---ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~-~La~~G~~---V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
++|||||+ |..|.-|.+ .|....++ +..+..... ......-.... ..+....+.+++ .. +|++|+++|
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~s-g~~~~~f~g~~--~~v~~~~~~~~~-~~---~Divf~a~~ 74 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQA-GGAAPSFGGKE--GTLQDAFDIDAL-KK---LDIIITCQG 74 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhh-CCcccccCCCc--ceEEecCChhHh-cC---CCEEEECCC
Confidence 68999997 999999998 55556676 666543311 11110000000 011111234444 33 899999998
Q ss_pred CCchHHHHHHHHHhcCCCC--cEEEecCCCC
Q 010637 82 AGSPVDQTIAALSEHMSPG--DCIIDGGNEW 110 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g--~iIId~st~~ 110 (505)
.+ ....+...+. ..| .+|||.|+.+
T Consensus 75 ~~-~s~~~~~~~~---~aG~~~~VID~Ss~f 101 (369)
T PRK06598 75 GD-YTNEVYPKLR---AAGWQGYWIDAASTL 101 (369)
T ss_pred HH-HHHHHHHHHH---hCCCCeEEEECChHH
Confidence 86 4555555443 357 5799998754
No 490
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=93.21 E-value=0.49 Score=48.10 Aligned_cols=86 Identities=14% Similarity=0.115 Sum_probs=54.5
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.++|-|.| .|-+|..+++.|+++|++|.+.+|+.++.+.+.+.... .. .. ..++..=+.+..
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~---------~~-----~~---~~~~~~Dl~~~~ 68 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGI---------PP-----DS---YTIIHIDLGDLD 68 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhc---------cC-----Cc---eEEEEecCCCHH
Confidence 34577776 59999999999999999999999998887665543100 00 00 222223334444
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st 108 (505)
.++.+++++.....+=++||+...
T Consensus 69 ~v~~~~~~~~~~~~~iD~li~nAg 92 (322)
T PRK07453 69 SVRRFVDDFRALGKPLDALVCNAA 92 (322)
T ss_pred HHHHHHHHHHHhCCCccEEEECCc
Confidence 566666665544334477777654
No 491
>PRK05876 short chain dehydrogenase; Provisional
Probab=93.20 E-value=0.48 Score=47.09 Aligned_cols=83 Identities=8% Similarity=0.065 Sum_probs=53.0
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--EcCCCc
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAGS 84 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~~~ 84 (505)
.+-|.| .|.+|..+|..|+++|++|.+.+|++++.+++.+.... .. .++.++ =+.+..
T Consensus 8 ~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~----------------~~---~~~~~~~~Dv~d~~ 68 (275)
T PRK05876 8 GAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRA----------------EG---FDVHGVMCDVRHRE 68 (275)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----------------cC---CeEEEEeCCCCCHH
Confidence 355555 69999999999999999999999998876655432110 00 222222 223334
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.++.+++++.....+=+++|++...
T Consensus 69 ~v~~~~~~~~~~~g~id~li~nAg~ 93 (275)
T PRK05876 69 EVTHLADEAFRLLGHVDVVFSNAGI 93 (275)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCc
Confidence 5666666666555455778876543
No 492
>PRK07060 short chain dehydrogenase; Provisional
Probab=93.20 E-value=0.49 Score=45.54 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=35.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
+++.|.|. |.+|..++..|+++|++|.+.+|++++.+++.+
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~ 51 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAG 51 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46888887 899999999999999999999999887766554
No 493
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=93.20 E-value=0.15 Score=51.55 Aligned_cols=70 Identities=14% Similarity=0.175 Sum_probs=46.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp 81 (505)
|+|.|.|. |.+|..++..|+++|++|.+.+|+++....+...+. .... ..+.+++.+.++.+|+||-+..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-----~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDV-----EIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCc-----eEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 47889985 999999999999999999999998765433321111 0111 1233444444445788887653
No 494
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=93.19 E-value=0.11 Score=54.07 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=31.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
.+|.|||.|..|..+|..|+++|++|.++++++.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 4799999999999999999999999999998753
No 495
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=93.18 E-value=0.32 Score=49.56 Aligned_cols=73 Identities=10% Similarity=0.080 Sum_probs=48.7
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHH---HHHHhhcccCCC-----CeeeeCCHHHHHhhcCCCcE
Q 010637 5 ALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVD---ETLDRAHREGQL-----PLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 5 ~~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~---~l~~~~~~~g~~-----~i~~~~s~~e~v~~l~~adv 75 (505)
..++|+|-|+ |.+|+.+...|+++||+|.+.-|+++.-+ .+.+.......+ .+.-..++.++++. ||.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~g---cdg 81 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDG---CDG 81 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhC---CCE
Confidence 4568999986 99999999999999999999999987622 233321111001 12223455556665 888
Q ss_pred EEEEc
Q 010637 76 VIILV 80 (505)
Q Consensus 76 Iil~v 80 (505)
||-+.
T Consensus 82 VfH~A 86 (327)
T KOG1502|consen 82 VFHTA 86 (327)
T ss_pred EEEeC
Confidence 87654
No 496
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=93.14 E-value=0.12 Score=53.78 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=32.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
++++|.|||.|.+|.+.|..|+++|++|+++++...
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~ 38 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA 38 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 456899999999999999999999999999998764
No 497
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=93.12 E-value=2.1 Score=45.68 Aligned_cols=117 Identities=10% Similarity=0.046 Sum_probs=71.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEE-EEeCC----------hHHHHHHHHhhccc-CC---C-----CeeeeCCHHHH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPIS-VYNRT----------TSKVDETLDRAHRE-GQ---L-----PLTGHYTPRDF 66 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~-v~dr~----------~~~~~~l~~~~~~~-g~---~-----~i~~~~s~~e~ 66 (505)
++|.|-|.|++|...|..|.+.|.+|. +.|.+ .+++..+.+..... +. . +.+.. +.+++
T Consensus 238 k~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~-~~~~~ 316 (454)
T PTZ00079 238 KTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV-PGKKP 316 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe-CCcCc
Confidence 579999999999999999999999988 77877 55654433211100 00 0 11111 22222
Q ss_pred HhhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 67 v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
.. -.||+.+-|-..+..-.+..+.|... .=++|+...|... |.+..+.+.++|+.|+.
T Consensus 317 ~~--~~cDI~iPcA~~n~I~~~~a~~l~~~--~ak~V~EgAN~p~--t~eA~~~L~~~GI~~~P 374 (454)
T PTZ00079 317 WE--VPCDIAFPCATQNEINLEDAKLLIKN--GCKLVAEGANMPT--TIEATHLFKKNGVIFCP 374 (454)
T ss_pred cc--CCccEEEeccccccCCHHHHHHHHHc--CCeEEEecCCCCC--CHHHHHHHHHCCcEEEC
Confidence 22 13888887765543223333444321 2357788777743 34677788999998874
No 498
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=93.12 E-value=1.3 Score=42.44 Aligned_cols=77 Identities=12% Similarity=0.160 Sum_probs=52.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh-HHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~-~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||.|..|..=+..|.+.|-+|+++..+. +....+...+... -+...-.++++. .+++||.++.+. .
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~---~~~~~~~~~~~~----~~~lviaAt~d~-~ 84 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIK---WIEREFDAEDLD----DAFLVIAATDDE-E 84 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcc---hhhcccChhhhc----CceEEEEeCCCH-H
Confidence 579999999999999999999999999997776 4555555543210 011122333333 389999999885 4
Q ss_pred HHHHHH
Q 010637 86 VDQTIA 91 (505)
Q Consensus 86 v~~vl~ 91 (505)
+.+-+.
T Consensus 85 ln~~i~ 90 (210)
T COG1648 85 LNERIA 90 (210)
T ss_pred HHHHHH
Confidence 554443
No 499
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.08 E-value=1.5 Score=41.92 Aligned_cols=41 Identities=15% Similarity=0.350 Sum_probs=35.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
++|-|.|. |.+|..+++.|++.|++|.+.+|++++.+.+.+
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKK 47 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46888876 889999999999999999999999987766543
No 500
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=93.06 E-value=0.52 Score=45.57 Aligned_cols=87 Identities=16% Similarity=0.177 Sum_probs=51.5
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEE-eCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVY-NRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~-dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+++|-|.|. |.+|..+++.|+++|++|.+. .|++++.+.+.+..... -.. ...+..-+.+.
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~~~ 64 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAA--------------GGR---ACVVAGDVANE 64 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--------------CCc---EEEEEeccCCH
Confidence 456888875 889999999999999999765 56666555443321100 000 12222223333
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
..+++.++++.+.+.+=+++|.+...
T Consensus 65 ~~~~~~~~~~~~~~~~id~li~~ag~ 90 (248)
T PRK06947 65 ADVIAMFDAVQSAFGRLDALVNNAGI 90 (248)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 45566666665545455677766553
Done!