Query 010639
Match_columns 505
No_of_seqs 529 out of 1629
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 11:06:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010639.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010639hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 100.0 1.9E-32 6.5E-37 268.8 35.9 386 28-486 23-426 (438)
2 1pw4_A Glycerol-3-phosphate tr 100.0 1.6E-34 5.4E-39 284.7 20.6 389 35-493 32-434 (451)
3 4aps_A DI-OR tripeptide H+ sym 100.0 4.1E-30 1.4E-34 255.9 29.6 402 31-497 13-476 (491)
4 2gfp_A EMRD, multidrug resista 100.0 5E-29 1.7E-33 239.1 23.5 347 36-468 5-354 (375)
5 4gc0_A D-xylose-proton symport 100.0 2.8E-28 9.7E-33 242.7 26.2 392 65-499 54-469 (491)
6 2cfq_A Lactose permease; trans 100.0 2.6E-28 8.9E-33 237.2 17.5 393 31-498 7-405 (417)
7 2xut_A Proton/peptide symporte 99.9 3.3E-25 1.1E-29 222.4 19.9 406 35-496 16-506 (524)
8 4aps_A DI-OR tripeptide H+ sym 99.5 2.1E-12 7.1E-17 128.1 19.6 185 285-494 13-198 (491)
9 1pw4_A Glycerol-3-phosphate tr 99.4 3.7E-12 1.3E-16 124.7 18.3 146 336-497 66-211 (451)
10 3o7q_A L-fucose-proton symport 99.4 3.1E-11 1.1E-15 117.7 21.0 113 337-465 66-178 (438)
11 2gfp_A EMRD, multidrug resista 99.4 1E-11 3.5E-16 118.4 15.3 142 336-498 39-180 (375)
12 2xut_A Proton/peptide symporte 99.3 3.1E-11 1.1E-15 120.6 18.6 176 285-491 12-197 (524)
13 4gc0_A D-xylose-proton symport 99.2 1E-11 3.5E-16 123.0 8.5 179 46-251 292-471 (491)
14 2cfq_A Lactose permease; trans 99.2 6.1E-11 2.1E-15 114.7 11.0 165 47-248 236-405 (417)
15 2g9p_A Antimicrobial peptide l 53.4 9.9 0.00034 18.3 1.9 14 351-364 2-15 (26)
16 2dw3_A Intrinsic membrane prot 25.5 1.5E+02 0.0051 19.7 4.7 32 220-251 31-62 (77)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=1.9e-32 Score=268.77 Aligned_cols=386 Identities=12% Similarity=0.060 Sum_probs=272.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHcCCChhhHHHHHHHhhhhhhhhcccccccccccCCCCCCcchhHHHH
Q 010639 28 VPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCG 107 (505)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~ 107 (505)
..++.+..+....+...+......+.+|.+.+++|.+..+.+++.+++.++..+++++.|+++| |+|||+.++. +
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~d----r~g~r~~l~~-~ 97 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMK----KLSYKAGIIT-G 97 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHH----HSCHHHHHHH-H
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH----HhcchHHHHH-H
Confidence 3445555555556666666677788889999999999999999999999999999999999999 9999998877 4
Q ss_pred HHHHHHHHHHH---hcccccccccCCCCCCCchhHHHHHHHHHHHHhhhhhccchhhhHhhhccccccchhhhHhHHHHH
Q 010639 108 AISIAVAVLLI---GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSL 184 (505)
Q Consensus 108 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 184 (505)
.+...++.++. .+++++ +.+++.+++.|++.+...+...+++.|++|+++|+ +++++.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~---------------~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~ 160 (438)
T 3o7q_A 98 LFLYALGAALFWPAAEIMNY---------------TLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGH--FRLNLAQT 160 (438)
T ss_dssp HHHHHHHHHHHHHHHHTTCH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccH---------------HHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHH--HHHHHHHH
Confidence 44455555555 555555 78889999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHhhcccccc-cccccccc------------ccccccccccchhHHHHHHHHHHHHHHHHhhhc-cccCCCCC
Q 010639 185 FMAVGNILGYATGSFSG-WFKILPFT------------LTSACNVDCANLKSAFFLDVIFIAITTCISASA-AHEVPLGS 250 (505)
Q Consensus 185 ~~~~g~~ig~~l~~~~~-~~~~~~~~------------~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-~~e~~~~~ 250 (505)
..++|..+++.+++.+. ... ... ..........+||+.|++.+++..+..++.++. .||++++.
T Consensus 161 ~~~~g~~~g~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 238 (438)
T 3o7q_A 161 FNSFGAIIAVVFGQSLILSNV--PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN 238 (438)
T ss_dssp HHHHHHHHHHHHTTHHHHTSS--CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC
T ss_pred HHHHHHHHHHHHHHHHHhccc--ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc
Confidence 99999999999988733 111 000 000000000018999987776665555444332 23332211
Q ss_pred CCCCCCCCccCcCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHH-HHHHHhCCCCCccccccc
Q 010639 251 HDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDW-MGREIYGGEPNEGQNYAT 329 (505)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 329 (505)
+++ ++ +++..++.++.+++ |.++...+..++..........+.+.| +. +.++.+..
T Consensus 239 ~~~---------~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~------- 295 (438)
T 3o7q_A 239 HSD---------AK----QGSFSASLSRLARI--RHWRWAVLAQFCYVGAQTACWSYLIRYAVE-EIPGMTAG------- 295 (438)
T ss_dssp CCC---------SS----TTSHHHHHHHHTTC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSTTCCHH-------
T ss_pred ccc---------cc----ccchhhhHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccCCcchh-------
Confidence 000 00 01112344556666 778887777777777777777788888 53 33332221
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHH
Q 010639 330 GVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIF 409 (505)
Q Consensus 330 g~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (505)
..........+...++.++.+++.||+|||+.+..+.++.+++.++..+.. +.+ ..+..
T Consensus 296 ---~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~-~~~~~ 354 (438)
T 3o7q_A 296 ---FAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG-----------------GHV-GLIAL 354 (438)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC-----------------HHH-HHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC-----------------CcH-HHHHH
Confidence 122334445777888999999999999999999988888877776655541 222 34445
Q ss_pred HHhhhHHHHHhhchhHhHhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCccHHHHHHHHHHHHH
Q 010639 410 TILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGG 486 (505)
Q Consensus 410 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 486 (505)
.+.|++.+...+..+++..|..|+ + ++.+.++.. ...+++.++|.+.|.+.|..| ++...|.+.+++.++..
T Consensus 355 ~~~g~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 355 TLCSAFMSIQYPTIFSLGIKNLGQ--D-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG-NIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCGG--G-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT-SSGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc--c-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHH
Confidence 777888888888888998898886 5 777777766 667999999999999999975 34556666554444433
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=1.6e-34 Score=284.72 Aligned_cols=389 Identities=13% Similarity=0.084 Sum_probs=283.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHcCCChhhHHHHHHHhhhhhhhhcccccccccccCCCCCCcchhHHHHHHHHHHH
Q 010639 35 KVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114 (505)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~ 114 (505)
......+...+......+.+|.+.+++ .+..+.+++.+++.++..++++++|+++| |+|||+.++. +.+...++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~g~r~~l~~-~~~~~~~~ 105 (451)
T 1pw4_A 32 GIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSD----RSNPRVFLPA-GLILAAAV 105 (451)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHH----HSCHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHH----hcCchHHHHH-HHHHHHHH
Confidence 333344444455555667788888889 99999999999999999999999999999 9999987777 55556666
Q ss_pred HHHHhc----ccccccccCCCCCCCchhHHHHHHHHHHHHhhhhhccchhhhHhhhccccccchhhhHhHHHHHHHHHHH
Q 010639 115 VLLIGL----SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (505)
Q Consensus 115 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (505)
.+++.+ ++++ +.+++++++.|++.+...+...+++.|++|+++|+ +++++.....++|.
T Consensus 106 ~~~~~~~~~~~~~~---------------~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~g~ 168 (451)
T 1pw4_A 106 MLFMGFVPWATSSI---------------AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERG--GIVSVWNCAHNVGG 168 (451)
T ss_dssp HHHHHHCHHHHSSS---------------SHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhccccH---------------HHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhh--HHHHHHHHHHHHHH
Confidence 666666 5665 67788899999999999999999999999999999 99999999999999
Q ss_pred HHHhhccccccccccccccccccccccccc-hhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCccC---cCCcc
Q 010639 191 ILGYATGSFSGWFKILPFTLTSACNVDCAN-LKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEG---HEQSS 266 (505)
Q Consensus 191 ~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~---~~~~~ 266 (505)
++++.+++.+.... + ||+.|++.+++.++..++.++.+||++++...+++++.+++ +.+.+
T Consensus 169 ~~g~~~~~~l~~~~---------------g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (451)
T 1pw4_A 169 GIPPLLFLLGMAWF---------------NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEK 233 (451)
T ss_dssp TSHHHHHHHHHHHT---------------CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC--------
T ss_pred HHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhh
Confidence 99999987632211 6 99999999888887777777788887655432221111111 00000
Q ss_pred chHHHHHHH--HHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCccccccccchhhHHHHHHHHHH
Q 010639 267 DVHEAFLWE--LFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVV 344 (505)
Q Consensus 267 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 344 (505)
++++...++ .++.+++ |.++...+..++..........+.+.|+.+ .++.+. ...........++
T Consensus 234 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~----------~~~~~~~~~~~~~ 300 (451)
T 1pw4_A 234 AEQELTAKQIFMQYVLPN--KLLWYIAIANVFVYLLRYGILDWSPTYLKE-VKHFAL----------DKSSWAYFLYEYA 300 (451)
T ss_dssp -----CCTHHHHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHBTT-BSCCCH----------HHHHHHHHHHHHH
T ss_pred hhcccccccchHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCH----------HHHHHHHHHHHHH
Confidence 001111111 2334444 788888888887777777777777777632 122111 1122334446777
Q ss_pred HHHHHHHHHHHHHhh--cchHHHHHHHHHHH-HHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHhhhHHHHHhh
Q 010639 345 LGITSVLMEKLCRKW--GAGFIWGISNILMA-LCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYS 421 (505)
Q Consensus 345 ~~i~~~~~g~l~~r~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 421 (505)
.+++.++.+++.||+ |+|+.+..+..+.. ++++++.+. +. .+.+...+...+.|++.+...+
T Consensus 301 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~g~~~~~~~~ 365 (451)
T 1pw4_A 301 GIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN--------------PA-GNPTVDMICMIVIGFLIYGPVM 365 (451)
T ss_dssp HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC--------------CT-TCHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh--------------cc-cCHHHHHHHHHHHHHHHhchHH
Confidence 888999999999999 99988877766655 444443322 11 1345566677778888888787
Q ss_pred chhHhHhhhhccccccchhHHHHHHHHHHH-HHHHHHhhhhhhHhhhcCCCccHHHHHHHHHHHHHHHHHHhc
Q 010639 422 VPYALVSIRTESLGLGQGLSLGVLNLAIVI-PQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAI 493 (505)
Q Consensus 422 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (505)
..++++.|..|+ +++|+++|+.+....+ +..++|.+.|.+.+..| +...|++.+++.+++.++.+...
T Consensus 366 ~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 366 LIGLHALELAPK--KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG--WDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHTSCT--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC--SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhch--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999998 9999999999999999 99999999999999876 66778877777777766655543
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=4.1e-30 Score=255.95 Aligned_cols=402 Identities=12% Similarity=0.049 Sum_probs=262.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHH-H-----cCCChhhHHHHHHHhhhhhhhhcccccccccccCCC-CCCcchh
Q 010639 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQ-E-----LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSR-FGRRRPF 103 (505)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r-~Grr~~~ 103 (505)
+..+......+...+.++....+++.|++ + +|.+..+.+++.+++.++..+++++.|+++| | +|||+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~~g~r~~~ 88 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVAD----RIIGARPAV 88 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTSCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccccchHHH
Confidence 34555555556666677777777777764 4 8999999999999999999999999999999 9 8999888
Q ss_pred HHHHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHhhhhhccchhhhHhhhccccccchhhhHhHHHH
Q 010639 104 IVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFS 183 (505)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 183 (505)
+. +.+...++.+++.++++. +.+++++++.|++.+...+...+++.|++|+++|+.+.++++.+
T Consensus 89 ~~-~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 152 (491)
T 4aps_A 89 FW-GGVLIMLGHIVLALPFGA---------------SALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFV 152 (491)
T ss_dssp HH-HHHHHHHHHHHHHSCCST---------------THHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHhhhH---------------HHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHH
Confidence 77 555566666677777665 67788899999999999999999999999998843227888888
Q ss_pred HHHHHHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCccCcC
Q 010639 184 LFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHE 263 (505)
Q Consensus 184 ~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 263 (505)
...++|..+++.+++.+.... +|++.|++.++..++..++..+..++..+++.++.+++. +.
T Consensus 153 ~~~~~g~~~~~~~~~~l~~~~---------------g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~- 214 (491)
T 4aps_A 153 FGINLGAFIAPLIVGAAQEAA---------------GYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPL--AP- 214 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS---------------CHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCC--SH-
T ss_pred HHHHHHHHHHHHHHHHHHhhh---------------hHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCcc--cc-
Confidence 999999999999988743322 899999998776666555554443433222111111100 00
Q ss_pred CccchHHHHH------------------------------------------------HHHHH--HHhcccHHHHHHHHH
Q 010639 264 QSSDVHEAFL------------------------------------------------WELFG--TFRYFSGTIWIILIV 293 (505)
Q Consensus 264 ~~~~~~~~~~------------------------------------------------~~~~~--~~~~~~~~~~~~~~~ 293 (505)
++.++.. ++... ..++.....+.+.+.
T Consensus 215 ---~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (491)
T 4aps_A 215 ---EEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIA 291 (491)
T ss_dssp ---HHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHH
T ss_pred ---chhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 0000000 00000 001100113333334
Q ss_pred HHHHHHhhHhHHhhhHHHHHHHHhCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH-----HH
Q 010639 294 TALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWG-----IS 368 (505)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~-----~~ 368 (505)
.++.+........+.+.|.. +.++.+.... + .......+...++.++.+++.||++||+... .+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~ 360 (491)
T 4aps_A 292 AVLFWAIEEQGSVVLATFAA-ERVDSSWFPV-----S-----WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVG 360 (491)
T ss_dssp HHHHHHHHGGGGTHHHHHHH-HSCCCSSSCS-----G-----GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHH-HHhccCccCH-----H-----HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHH
Confidence 44444444444445555553 3333322111 1 1122345566677888999999999886544 66
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHhhhHHHHHhhchhHhHhhhhccccccchhHHHHHHHH
Q 010639 369 NILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLA 448 (505)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 448 (505)
..+.++++.++......... +...+.+...+...+.|++.+...+..++++.|..|+ +.+|++.|+.+..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~ 430 (491)
T 4aps_A 361 LMFAGLSFLLMAIPGALYGT--------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK--AFNSQMMSMWFLS 430 (491)
T ss_dssp HHHHHHHHTTTHHHHHHCCC--------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT--TCSSSSTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCC--------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH--HHHHHHHHHHHHH
Confidence 66666666665554211110 0111345566777888888888888889999999999 9999999999999
Q ss_pred HHHHHHHHHhhhhhhHhhhcCCCccHHHHHHHHHHHHHHHHHHhccCCC
Q 010639 449 IVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSS 497 (505)
Q Consensus 449 ~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (505)
..+|..+++.+.+.+.+. + +...|...+++.+++.++.+...++.+
T Consensus 431 ~~~g~~i~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 431 SSVGSALNAQLVTLYNAK-S--EVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp HHHHHHHHHHHGGGGGGS-S--TTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHhcc-c--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988775 2 456777777777777766666655443
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.97 E-value=5e-29 Score=239.14 Aligned_cols=347 Identities=14% Similarity=0.057 Sum_probs=253.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHcCCChhhHHHHHHHhhhhhhhhcccccccccccCCCCCCcchhHHHHHHHHHHHH
Q 010639 36 VASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAV 115 (505)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~ 115 (505)
+....+...+......+.+|.+.+++|.|+.+.+++.++..++..+++++.|+++| |+|||+.++. +.....++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~~~~~~~~~ 79 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISD----RVGRRPVILV-GMSIFMLAT 79 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHT----TSCCCCCCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCchhHHH-HHHHHHHHH
Confidence 34444555566777778888899999999999999999999999999999999999 9999999887 445555666
Q ss_pred HHHhcccccccccCCCCCCCchhHHHHHHHHHHHHhhhhhccchhhhHhhhccccccchhhhHhHHHHHHHHHHHHHHhh
Q 010639 116 LLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYA 195 (505)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~ 195 (505)
+...+.+++ +.+++.+++.|++.+...+...+++.|++|+++|+ +++++.+...++|..+++.
T Consensus 80 ~~~~~~~~~---------------~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~ 142 (375)
T 2gfp_A 80 LVAVTTSSL---------------TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLR--HANSLLNMGILVSPLLAPL 142 (375)
T ss_dssp HHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCC--SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccH---------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHH--HHHHHHHHHHHHHHHhhHH
Confidence 666666555 77888999999999999999999999999999999 9999999999999999999
Q ss_pred ccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCccCcCCccchHHHHHHH
Q 010639 196 TGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWE 275 (505)
Q Consensus 196 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (505)
+++++.... +|++.|.+.+++..+..++..+.+||+++++++++ +.. ++
T Consensus 143 ~~~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~----------~~ 191 (375)
T 2gfp_A 143 IGGLLDTMW---------------NWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRT------RLL----------TS 191 (375)
T ss_dssp HHHHSSCHH---------------HHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC------CTT----------TC
T ss_pred HHHHHHHhc---------------cHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccc------cHH----------HH
Confidence 988743322 89999999888777777766677777654322210 000 01
Q ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 010639 276 LFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKL 355 (505)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l 355 (505)
.++.+|+ |.++...+..++..........+.+.|+.+.. + + +............+...++.++.+++
T Consensus 192 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g--------~--~~~~~g~~~~~~~~~~~~~~~~~~~l 258 (375)
T 2gfp_A 192 YKTLFGN--SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVL-G--------L--SSMTVSILFILPIPAAFFGAWFAGRP 258 (375)
T ss_dssp STHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHH-H--------H--HHHHHHHHHHTHHHHHHHHHHHHHTT
T ss_pred HHHHhcC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------C--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233445 67777777777777777777777777764322 1 1 11111222334567777888888999
Q ss_pred HHhhcchHHHHHHHHH-HHHHHH--HHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHhhhHHHHHhhchhHhHhhhhc
Q 010639 356 CRKWGAGFIWGISNIL-MALCFL--AMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTE 432 (505)
Q Consensus 356 ~~r~g~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 432 (505)
.||++++. ..+..+ ...+.. ...... .+ +.+...+...+.|++.+...+...++..|..|
T Consensus 259 ~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p 321 (375)
T 2gfp_A 259 NKRFSTLM--WQSVICCLLAGLLMWIPDWFG---VM------------NVWTLLVPAALFFFGAGMLFPLATSGAMEPFP 321 (375)
T ss_dssp TTHHHHHH--HHHHHHHHHTSSSSSHHHHHH---HH------------HHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHhhhc---cc------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 99887732 222222 222222 111110 00 34556667778889999988999999999987
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhhhhHhhhc
Q 010639 433 SLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 468 (505)
Q Consensus 433 ~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g 468 (505)
+++|++.|+.+....++..++|.+.|.+.+..+
T Consensus 322 ---~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 322 ---FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ 354 (375)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH
T ss_pred ---cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 578999999999999999999999999988654
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.96 E-value=2.8e-28 Score=242.72 Aligned_cols=392 Identities=15% Similarity=0.099 Sum_probs=239.3
Q ss_pred hhhHHHHHHHhhhhhhhhcccccccccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCC---CCCCchhHHH
Q 010639 65 HAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR---GDFRPRAIAV 141 (505)
Q Consensus 65 ~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 141 (505)
..+.|++.+++.++..++++++|+++| |+|||+.+++.. ++..++.++.++++......... ......+.+.
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laD----r~GRk~~l~~~~-~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSN----RFGRRDSLKIAA-VLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPE 128 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHH----HTCHHHHHHHHH-HHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCHHHHHHHH-HHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHH
Confidence 456788999999999999999999999 999999888844 44555555555433210000000 0012344588
Q ss_pred HHHHHHHHHhhhhhccchhhhHhhhccccccchhhhHhHHHHHHHHHHHHHHhhccccccccccccccccccccccccch
Q 010639 142 FVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANL 221 (505)
Q Consensus 142 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (505)
++++|++.|++.+...+...++++|+.|+++|+ +..++.+....+|.++++.++......... ......+|
T Consensus 129 l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~ 199 (491)
T 4gc0_A 129 FVIYRIIGGIGVGLASMLSPMYIAELAPAHIRG--KLVSFNQFAIIFGQLLVYCVNYFIARSGDA-------SWLNTDGW 199 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHH--HHHHHHHHHHHHHHHHHHHHHHHHHTTSCT-------TTTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhh--hhHHhhhhhhhhhhhhhhhcchhhcccccc-------ccccchhh
Confidence 999999999999999999999999999999999 999999999999998888776542111000 00011256
Q ss_pred hHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCccCcCC----------ccchHHHHHHHH-----HHHHhcccHH
Q 010639 222 KSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQ----------SSDVHEAFLWEL-----FGTFRYFSGT 286 (505)
Q Consensus 222 ~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~-----~~~~~~~~~~ 286 (505)
+..+.+..+. .+..++..++.||+|+....+.++++.++..+ +..+.+....+. .....+ .+.
T Consensus 200 ~~~~~~~~~~-~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 277 (491)
T 4gc0_A 200 RYMFASECIP-ALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFG-VGV 277 (491)
T ss_dssp HHHHHTTHHH-HHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSC-CTH
T ss_pred HHHhhhhhhh-hhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhc-ccH
Confidence 6666655543 44445556778998765433322221110000 000000000000 011111 123
Q ss_pred HHHHHHHHHHHHH-hhHhHHhhhHHHHHHHHhCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Q 010639 287 IWIILIVTALTWL-GWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIW 365 (505)
Q Consensus 287 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~ 365 (505)
.........+.+. +...+..|.+... +.. +.+ ...........++...++.++.+++.||+|||+.+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~ 345 (491)
T 4gc0_A 278 IVIGVMLSIFQQFVGINVVLYYAPEVF-KTL-GAS----------TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ 345 (491)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH-HHS-SCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHhcchHHH-Hhc-CCC----------ccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchh
Confidence 3333333333332 3333343444333 221 100 01112223345677788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHhhhHHHH-HhhchhHhHhhhhccccccchhHHHH
Q 010639 366 GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAI-TYSVPYALVSIRTESLGLGQGLSLGV 444 (505)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~ 444 (505)
..+.....++++.+...... .. ..+..++...+...+++. ..++.+.+.+|.+|. +.|+++.|+
T Consensus 346 ~~~~~~~~~~~~~l~~~~~~-----------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt--~~R~~~~g~ 410 (491)
T 4gc0_A 346 IIGALGMAIGMFSLGTAFYT-----------QA--PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN--AIRGKALAI 410 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-----------TC--CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCT--TTHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhc-----------cc--chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCH--hHHHHHHHH
Confidence 98888887777666544211 11 112222222222222222 235678899999999 999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhhc----CCCccHHHHHHHHHHHHHHHHHHhccCCCCC
Q 010639 445 LNLAIVIPQIVVSMGSGPWDQLFG----GGNSPAFAVGGISALAGGLIAILAIPRSSAQ 499 (505)
Q Consensus 445 ~~~~~~~~~~i~~~~~g~l~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (505)
.+....+++++++.+.+.+.+... .+....|++.+++++++.++.+++.||+|.+
T Consensus 411 ~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 411 AVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 999999999999988877654321 1134567788888888888888999988765
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.96 E-value=2.6e-28 Score=237.18 Aligned_cols=393 Identities=13% Similarity=0.103 Sum_probs=233.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HcCCChhhHHHHHHHhhhhhhhhcccccccccccCCCCCCcchhHHHHHH
Q 010639 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (505)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~ 109 (505)
++.+......+.....+....+++|.+++ ++|.|+.+.|++.++..++..++++++|+++| |+||||+++....+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsD----r~Grr~~l~~~~~~ 82 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSD----KLGLRKYLLWIITG 82 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHT----TSTTCCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcchHHHHHHHHH
Confidence 44555554445555566666788888875 58999999999999999999999999999999 99999988874443
Q ss_pred HHHH--HHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHhhhhhccchhhhHhhhcccc--ccchhhhHhHHHHHH
Q 010639 110 SIAV--AVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK--DHRRTRVANAYFSLF 185 (505)
Q Consensus 110 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~ 185 (505)
..+. ......+.+... .....++.+.+++.+...+...+...++.++ ++++ ...+.....
T Consensus 83 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~ 146 (417)
T 2cfq_A 83 MLVMFAPFFIFIFGPLLQ--------------YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSN--FEFGRARMF 146 (417)
T ss_dssp TTSCHHHHHHHTHHHHHH--------------TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHT--CCHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcc--cchHHHHHH
Confidence 3221 111111111100 0011223333333343333334444444443 2344 556666666
Q ss_pred HHHHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCccCcCCc
Q 010639 186 MAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQS 265 (505)
Q Consensus 186 ~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 265 (505)
.++|..+++.+++++.. .+|++.|++.++..++..+...+..||+++.. ++ + ++++++++
T Consensus 147 ~~~g~~~~~~l~~~l~~----------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~-~~~~~~~~- 206 (417)
T 2cfq_A 147 GCVGWALGASIVGIMFT----------------INNQFVFWLGSGCALILAVLLFFAKTDAPSSA-TV-A-NAVGANHS- 206 (417)
T ss_dssp TTTHHHHHHHHHHHHHH----------------HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSS-CS-S-SSSSSCCC-
T ss_pred HHHHHHHHHHHHHHHHH----------------hchhHHHHHHHHHHHHHHHHHHHcCccccccc-cc-c-cccccccc-
Confidence 77888888887766211 16888888766554333333333333332211 10 0 00000000
Q ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCccccccccchhhHHHHHHHHHHH
Q 010639 266 SDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVL 345 (505)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 345 (505)
+ ...++.++.+++ |.++...+..+.....+..+....+.|+. +.++.. .. +.........+..+..
T Consensus 207 ~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~--~~~~~g~~~~~~~~~~ 272 (417)
T 2cfq_A 207 A----FSLKLALELFRQ--PKLWFLSLYVIGVSCTYDVFDQQFANFFT-SFFATG-----EQ--GTRVFGYVTTMGELLN 272 (417)
T ss_dssp C----CCHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTSSSH-----HH--HTHHHHHHHHHHHHHH
T ss_pred c----ccHHHHHHHhcC--CchhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcc-----CC--ChhHHHHHHHHHHHHH
Confidence 0 112234555666 77766655444433333333334455553 222100 00 1111112233345667
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHhhhHHHHHhhchhH
Q 010639 346 GITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYA 425 (505)
Q Consensus 346 ~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 425 (505)
+++.++.+++.||+|||+.+..+..+.++++++..+. + +.+..++...+.+++.+...+..+.
T Consensus 273 ~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~--------------~---~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (417)
T 2cfq_A 273 ASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--------------T---SALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC--------------C---SHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh--------------c---cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999888777776665444332 1 2344555555566666665566678
Q ss_pred hHhhhhccccccchhHHHH-HHHHHHHHHHHHHhhhhhhHhhhcCCCccHHHHHHHHHHHHHHHHHHhccCCCC
Q 010639 426 LVSIRTESLGLGQGLSLGV-LNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSA 498 (505)
Q Consensus 426 ~~~~~~~~~~~~~g~~~g~-~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (505)
++.|..|+ +.+|++++. .+....+|+.++|.+.|.+.+..| +...|.+.+++.+++.++.+...||+++
T Consensus 336 ~~~~~~p~--~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g--~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 336 YITSQFEV--RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG--FQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHSCH--HHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH--HHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHCCH--HHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 99999999 999999998 488889999999999999999765 5667888787877777666665665443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.93 E-value=3.3e-25 Score=222.43 Aligned_cols=406 Identities=11% Similarity=0.094 Sum_probs=230.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHH-HHcC------CChhhHHHHHHHhhhhhhhhcccccccccccCCCC-CCcchhHHH
Q 010639 35 KVASVAGGIQFGWALQLSLLTPYV-QELG------IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRF-GRRRPFIVC 106 (505)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g------~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~-Grr~~~~~~ 106 (505)
.+....+...+.++....+++.++ +++| .+..+.+++.+++.++..++.++.|+++| |+ |||+.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~~g~r~~~~~- 90 (524)
T 2xut_A 16 YIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIAD----RFFGKYNTILW- 90 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHT----TSSCSHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcchHHHHH-
Confidence 334444555566666667777776 6689 99999999999999999999999999999 99 99988877
Q ss_pred HHHHHHHHHHHHhccc-ccccccCCCCCCCchhHHHHHHHHHHHHhhhhhccchhhhHhhhccccccchhhhHhHH---H
Q 010639 107 GAISIAVAVLLIGLSA-DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAY---F 182 (505)
Q Consensus 107 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~ 182 (505)
+.+...++.++..+++ +. +.+++.+++.|++.+...+...+++.|++|+++|+ ++.+. .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~ 153 (524)
T 2xut_A 91 LSLIYCVGHAFLAIFEHSV---------------QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKS--LAQKAFDMF 153 (524)
T ss_dssp HHHHHHHHHHHHHHTSSCH---------------HHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTT--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccH---------------HHHHHHHHHHHHhccccchhHHHHHHHHcCccchH--HHHHHHHHH
Confidence 4455556666666655 54 67788899999999999999999999999999997 55555 8
Q ss_pred HHHHHHHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCccCc
Q 010639 183 SLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGH 262 (505)
Q Consensus 183 ~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 262 (505)
....++|..+++.+++.+.... +|++.|++.+++.++..++..+..++.++.+.++++..+..+.
T Consensus 154 ~~~~~~g~~~g~~~~~~l~~~~---------------g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (524)
T 2xut_A 154 YFTINFGSFFASLSMPLLLKNF---------------GAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPV 218 (524)
T ss_dssp HHHHHHHHHHHHHTSTHHHHTS---------------CHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC------------
T ss_pred HHHHHHHHHHHHHHHHHHhccc---------------cHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHH
Confidence 8899999999999988733222 8999999888776655554443333222111111000000000
Q ss_pred -----CCcc-chHH-HHHHH-----------------------------------------HHH--------HHhcccHH
Q 010639 263 -----EQSS-DVHE-AFLWE-----------------------------------------LFG--------TFRYFSGT 286 (505)
Q Consensus 263 -----~~~~-~~~~-~~~~~-----------------------------------------~~~--------~~~~~~~~ 286 (505)
++.. +.++ ....+ ..+ ..++ .+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 297 (524)
T 2xut_A 219 IRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDG-VRS 297 (524)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTT-TTT
T ss_pred HHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHH-HHH
Confidence 0000 0000 00000 000 0011 122
Q ss_pred HHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHHH----Hhhcc-
Q 010639 287 IWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLC----RKWGA- 361 (505)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~----~r~g~- 361 (505)
.+............+.....+.+.+. ....+.+... + ...+ .......+..++...+.+++. ||.++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (524)
T 2xut_A 298 VLRILVLFALVTPFWSLFDQKASTWI-LQANDMVKPQ---W---FEPA-MMQALNPLLVMLLIPFNNFVLYPAIERMGVK 369 (524)
T ss_dssp HHHHHHHHTTSHHHHTTTSSTTTHHH-HHHHHSCCCS---S---SCHH-HHHTTSGGGHHHHGGGTTTC-----------
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhH-HhHHhcCCCe---e---ecHH-HHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC
Confidence 21111111110000111111111121 1111111100 0 0111 111112223333444444432 44432
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHhhhHHHHHhhchhHhHhhhhccccccc
Q 010639 362 ---GFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQ 438 (505)
Q Consensus 362 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (505)
++.+..+.++.+++++++........+ +...+.+..++..++.|++.+...+..++++.|..|+ +.+
T Consensus 370 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~--~~~ 439 (524)
T 2xut_A 370 LTALRKMGAGIAITGLSWIVVGTIQLMMDG--------GSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPK--AMK 439 (524)
T ss_dssp -CCHHHHHTHHHHHHHHHHTTTTTTTTTTT--------TCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCT--TCC
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH--HHH
Confidence 345556666666666554443100000 0011345566778888999998888999999999999 999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhHhhhcC--------CC-ccHHHHHHHHHHHHHHHHHHhccCC
Q 010639 439 GLSLGVLNLAIVIPQIVVSMGSGPWDQLFGG--------GN-SPAFAVGGISALAGGLIAILAIPRS 496 (505)
Q Consensus 439 g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (505)
|+++|+.++...+|+.++|.+.|.+.+..+. +. ...|.+.+++.+++.++.+.+.++.
T Consensus 440 g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (524)
T 2xut_A 440 GTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSY 506 (524)
T ss_dssp TTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998874210 01 1225566666666665555554443
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.47 E-value=2.1e-12 Score=128.09 Aligned_cols=185 Identities=10% Similarity=0.072 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHh-hcchH
Q 010639 285 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK-WGAGF 363 (505)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~~r-~g~~~ 363 (505)
+.++......++..++++....+.+.|+.+..... +++.......+......++..++.++.|+++|| +|||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTG------DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 56777777777777777777777788875442100 011111122233445677888999999999999 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHhhhHHHHHhhchhHhHhhhhccccccchhHHH
Q 010639 364 IWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLG 443 (505)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 443 (505)
.+..+.++.+++.++..+.+ +.+.+++..++.|++.+...+...+++.|.+|++++.|+.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 149 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPF-----------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFS 149 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCC-----------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh-----------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeeh
Confidence 99999998888887766542 3566777888899999999999999999999984444888999
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhhhcCCCccHHHHHHHHHHHHHHHHHHhcc
Q 010639 444 VLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 494 (505)
Q Consensus 444 ~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (505)
..+....+|..++|.+++.+.+..| +...|.+.++..+++.+......+
T Consensus 150 ~~~~~~~~g~~~~~~~~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 150 IFVFGINLGAFIAPLIVGAAQEAAG--YHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999866 667777777766666655554433
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.43 E-value=3.7e-12 Score=124.73 Aligned_cols=146 Identities=13% Similarity=0.068 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHhhhH
Q 010639 336 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 415 (505)
Q Consensus 336 ~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 415 (505)
+......+...++.++.|+++||+|||+.+.++.++.+++.++..+..... + +.+.+++..++.|++
T Consensus 66 ~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~----------~---~~~~l~~~~~l~G~~ 132 (451)
T 1pw4_A 66 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT----------S---SIAVMFVLLFLCGWF 132 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH----------S---SSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcc----------c---cHHHHHHHHHHHHHH
Confidence 334456777888999999999999999999999999999888887721000 1 356677788899999
Q ss_pred HHHHhhchhHhHhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCccHHHHHHHHHHHHHHHHHHhccC
Q 010639 416 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 495 (505)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (505)
.+...+...+++.|.+|+ ++|++++|+.+....+|..++|.+++.+.+..| ++...|++.+++.++..++.++..||
T Consensus 133 ~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~w~~~f~~~~~~~~~~~~~~~~~~~~ 209 (451)
T 1pw4_A 133 QGMGWPPCGRTMVHWWSQ--KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN-DWHAALYMPAFCAILVALFAFAMMRD 209 (451)
T ss_dssp HHHTHHHHHHHHHTTCTT--THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC-CSTTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred hhhccchHHHHHHHHCCc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 999999999999999998 999999999999999999999999999888764 24566777777776666666566555
Q ss_pred CC
Q 010639 496 SS 497 (505)
Q Consensus 496 ~~ 497 (505)
++
T Consensus 210 ~~ 211 (451)
T 1pw4_A 210 TP 211 (451)
T ss_dssp SS
T ss_pred CH
Confidence 43
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.38 E-value=3.1e-11 Score=117.66 Aligned_cols=113 Identities=11% Similarity=-0.119 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHhhhHH
Q 010639 337 GLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPL 416 (505)
Q Consensus 337 ~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 416 (505)
......+...++.++.|+++||+|||+.+..+.++.+++.++...... . + +.+.+++..++.|++.
T Consensus 66 ~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---~--------~---~~~~l~~~~~l~G~~~ 131 (438)
T 3o7q_A 66 IQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE---I--------M---NYTLFLVGLFIIAAGL 131 (438)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH---T--------T---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc---c--------c---cHHHHHHHHHHHHhhH
Confidence 334467777889999999999999999999999999888887733210 0 1 4677888889999999
Q ss_pred HHHhhchhHhHhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhHh
Q 010639 417 AITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQ 465 (505)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~ 465 (505)
+...+...+++.|..|+ ++|++++|+.+....+|..++|.+++.+.+
T Consensus 132 ~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 178 (438)
T 3o7q_A 132 GCLETAANPFVTVLGPE--SSGHFRLNLAQTFNSFGAIIAVVFGQSLIL 178 (438)
T ss_dssp HHHHHHHHHHHHHSSCS--TTHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHhhhhHHHHHHHHcCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999 999999999999999999999999999983
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.35 E-value=1e-11 Score=118.43 Aligned_cols=142 Identities=9% Similarity=0.079 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHhhhH
Q 010639 336 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 415 (505)
Q Consensus 336 ~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 415 (505)
+......+...++.++.|+++||+|||+.+..+..+.+++.++..+.+ +.+..++...+.|++
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~l~g~~ 101 (375)
T 2gfp_A 39 SVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS-----------------SLTVLIAASAMQGMG 101 (375)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHH
Confidence 334446777888999999999999999999999999988888877764 567778888899999
Q ss_pred HHHHhhchhHhHhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCccHHHHHHHHHHHHHHHHHHhccC
Q 010639 416 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 495 (505)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (505)
.+...+...+++.|..|+ ++|+++++..+....+|..++|.+++.+.+..| +...|.+.++..++..+......||
T Consensus 102 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (375)
T 2gfp_A 102 TGVGGVMARTLPRDLYER--TQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN--WRACYLFLLVLCAGVTFSMARWMPE 177 (375)
T ss_dssp HHHHHHHHHHHHHHHHHT--SSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH--HHHHHHHHHHHHHHHHCCCCCSSCC
T ss_pred HHhhhhhHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 999999999999999998 899999999999999999999999999988765 5566777666666665544455555
Q ss_pred CCC
Q 010639 496 SSA 498 (505)
Q Consensus 496 ~~~ 498 (505)
+++
T Consensus 178 ~~~ 180 (375)
T 2gfp_A 178 TRP 180 (375)
T ss_dssp CST
T ss_pred cCC
Confidence 443
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.34 E-value=3.1e-11 Score=120.60 Aligned_cols=176 Identities=10% Similarity=0.026 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhC------CCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010639 285 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYG------GEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK 358 (505)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~~r 358 (505)
+.++.+.+..++..++.+....+.+.|+.++ ++ .+.. ...+......+...++.++.|+++||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~s~~----------~~g~~~~~~~~~~~~~~~~~G~l~dr 80 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTA-LLLSIPEELRGA----------VAKDVFHSFVIGVYFFPLLGGWIADR 80 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHS-CSSCCSSSTTTT----------THHHHHHHHHHHHHHTHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccccccCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666777777777777777778777543 33 2221 11233444677778889999999999
Q ss_pred h-cchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHhhhHHHHHhhchhHhHhhhhcccccc
Q 010639 359 W-GAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLG 437 (505)
Q Consensus 359 ~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 437 (505)
+ |||+.+.++.++.+++.++..+. +. +.+.+++..++.|++.+...+...+++.|.+|+ ++
T Consensus 81 ~~g~r~~~~~~~~~~~~~~~~~~~~--------------~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~ 142 (524)
T 2xut_A 81 FFGKYNTILWLSLIYCVGHAFLAIF--------------EH--SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ--SN 142 (524)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHT--------------SS--CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCST--TT
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHh--------------cc--cHHHHHHHHHHHHHhccccchhHHHHHHHHcCc--cc
Confidence 9 99999999988888887776654 20 256677778888999999889999999999998 78
Q ss_pred chhHHHH---HHHHHHHHHHHHHhhhhhhHhhhcCCCccHHHHHHHHHHHHHHHHHH
Q 010639 438 QGLSLGV---LNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAIL 491 (505)
Q Consensus 438 ~g~~~g~---~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 491 (505)
|++..+. .+....+|..++|.+++.+.+..| +...|.+.+++.+++.+..+.
T Consensus 143 r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 143 KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG--AAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC--HHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHHHHHHH
Confidence 8766555 888999999999999999998765 566777777666666554443
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.24 E-value=1e-11 Score=123.02 Aligned_cols=179 Identities=16% Similarity=0.063 Sum_probs=117.7
Q ss_pred HHHHHHHhhhhHHHHcCCChhhHHHHHHHhhhhhhhhcccccccccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccc
Q 010639 46 GWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIG 125 (505)
Q Consensus 46 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (505)
+......+.+.+.+..+.+............+...++.++.+++.| |+|||+.++..... ..++.+........
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d----r~Grr~~~~~~~~~-~~~~~~~l~~~~~~- 365 (491)
T 4gc0_A 292 GINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVD----KFGRKPLQIIGALG-MAIGMFSLGTAFYT- 365 (491)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCSHHHHHHHHHH-HHHHHHHHHHHHHT-
T ss_pred hhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHH----hhcCcchhccchHH-HHHHHHHHHHHHhc-
Confidence 4455566777778889988888888778888888999999999999 99999888764433 33333333221111
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHHhhhhh-ccchhhhHhhhccccccchhhhHhHHHHHHHHHHHHHHhhccccccccc
Q 010639 126 WLLGDRGDFRPRAIAVFVFGFWILDVANNM-TQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK 204 (505)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~ 204 (505)
. ... +..++...+...+.+. ..+..+.+.+|++|.+.|+ .+.++......++..+++.+.+.+....
T Consensus 366 -------~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~--~~~g~~~~~~~~~~~i~~~~~p~l~~~~ 433 (491)
T 4gc0_A 366 -------Q-APG--IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRG--KALAIAVAAQWLANYFVSWTFPMMDKNS 433 (491)
T ss_dssp -------T-CCH--HHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHH--HHHHHHHHHHHHHHHHHHTHHHHHCHHH
T ss_pred -------c-cch--HHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 111 1122222222222222 2345678999999999999 8999999999999888877654421100
Q ss_pred cccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 010639 205 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSH 251 (505)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~ 251 (505)
......++...|++.++++++..++.++++||++.+..
T Consensus 434 ---------~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tL 471 (491)
T 4gc0_A 434 ---------WLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTL 471 (491)
T ss_dssp ---------HHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCH
T ss_pred ---------HHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCH
Confidence 00000145567888888888888888899999987654
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.19 E-value=6.1e-11 Score=114.72 Aligned_cols=165 Identities=8% Similarity=0.004 Sum_probs=112.9
Q ss_pred HHHHHHhhhhHHHH-cC---CChhhHHHHHHHhhhhhhhhcccccccccccCCCCCCcchhHHHHHHHHHHHHHHHhccc
Q 010639 47 WALQLSLLTPYVQE-LG---IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA 122 (505)
Q Consensus 47 ~~~~~~~~~~~~~~-~g---~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~ 122 (505)
+......+|.|.++ ++ .+....++..++..+...++.++.|+++| |+|||+.++. +.....+..+...+.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~~~~l~~-~~~~~~~~~~~~~~~~ 310 (417)
T 2cfq_A 236 YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIIN----RIGGKNALLL-AGTIMSVRIIGSSFAT 310 (417)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCHHHHHHH-HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHH----HhcHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 33333446666544 33 22445677788888888889999999999 9999987766 4444455555554443
Q ss_pred ccccccCCCCCCCchhHHHHHHHHHHHHhhhhhccchhhhHhhhccccccchhhhHhHH-HHHHHHHHHHHHhhcccccc
Q 010639 123 DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAY-FSLFMAVGNILGYATGSFSG 201 (505)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~g~~ig~~l~~~~~ 201 (505)
+. +.+++...+.+++.+...+...++++|.+|++.|+ .+.+. .+....+|..++|.+++++.
T Consensus 311 ~~---------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~lg~~~gp~l~G~l~ 373 (417)
T 2cfq_A 311 SA---------------LEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSA--TIYLVCFCFFKQLAMIFMSVLAGNMY 373 (417)
T ss_dssp SH---------------HHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHH--HHHHHHHTTTHHHHHHHHTHHHHTHH
T ss_pred cH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHhHHHHHhhhhHHHHH
Confidence 32 34444455556665555666788999999999999 77777 47778899999999888733
Q ss_pred ccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCC
Q 010639 202 WFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPL 248 (505)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~ 248 (505)
... +++..|.+.+++.++..++.++..||+++
T Consensus 374 ~~~---------------g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 374 ESI---------------GFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHS---------------HHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred Hhc---------------CcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 221 67778888887777776666666666544
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=53.45 E-value=9.9 Score=18.28 Aligned_cols=14 Identities=43% Similarity=0.643 Sum_probs=11.2
Q ss_pred HHHHHHHhhcchHH
Q 010639 351 LMEKLCRKWGAGFI 364 (505)
Q Consensus 351 ~~g~l~~r~g~~~~ 364 (505)
+.|.+.+++||+.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 35889999999864
No 16
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=25.46 E-value=1.5e+02 Score=19.69 Aligned_cols=32 Identities=3% Similarity=-0.041 Sum_probs=15.3
Q ss_pred chhHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 010639 220 NLKSAFFLDVIFIAITTCISASAAHEVPLGSH 251 (505)
Q Consensus 220 ~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~ 251 (505)
+|..++.+...+.++..-..-..+||+.++..
T Consensus 31 g~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~aP 62 (77)
T 2dw3_A 31 GWAGGVFFGTLLLIGFFRVVGRMLPIQENQAP 62 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTCSSCS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchhcccCC
Confidence 33334444444444444444456777655433
Done!