Query 010640
Match_columns 505
No_of_seqs 428 out of 3810
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 02:52:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010640.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010640hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02274 inosine-5'-monophosph 100.0 1.3E-96 3E-101 777.3 49.3 497 7-505 5-505 (505)
2 PTZ00314 inosine-5'-monophosph 100.0 1.3E-94 2.7E-99 762.4 47.8 488 9-501 2-495 (495)
3 KOG2550 IMP dehydrogenase/GMP 100.0 2.3E-95 5E-100 709.0 36.5 492 2-500 8-503 (503)
4 TIGR01303 IMP_DH_rel_1 IMP deh 100.0 8.4E-88 1.8E-92 704.5 46.7 453 23-496 11-474 (475)
5 PRK07107 inosine 5-monophospha 100.0 1.6E-87 3.4E-92 706.8 43.2 466 23-502 9-496 (502)
6 PRK07807 inosine 5-monophospha 100.0 3.9E-85 8.5E-90 685.0 43.5 455 23-497 12-477 (479)
7 PRK05567 inosine 5'-monophosph 100.0 2.2E-84 4.7E-89 688.3 45.6 463 23-500 8-477 (486)
8 TIGR01302 IMP_dehydrog inosine 100.0 2.6E-83 5.5E-88 673.4 43.9 440 23-472 1-450 (450)
9 PRK06843 inosine 5-monophospha 100.0 1.7E-73 3.8E-78 578.6 35.3 392 23-500 9-403 (404)
10 PF00478 IMPDH: IMP dehydrogen 100.0 4.3E-73 9.3E-78 565.2 31.2 347 23-495 2-352 (352)
11 PRK05096 guanosine 5'-monophos 100.0 6.6E-64 1.4E-68 488.4 32.8 323 23-487 8-339 (346)
12 TIGR01305 GMP_reduct_1 guanosi 100.0 4.4E-63 9.4E-68 483.1 33.7 323 23-487 7-338 (343)
13 cd00381 IMPDH IMPDH: The catal 100.0 3.5E-57 7.5E-62 455.6 34.5 325 23-484 1-325 (325)
14 TIGR01306 GMP_reduct_2 guanosi 100.0 4.3E-50 9.3E-55 396.8 32.6 315 23-491 1-320 (321)
15 PRK05458 guanosine 5'-monophos 100.0 2.1E-47 4.6E-52 379.5 31.0 317 23-493 4-325 (326)
16 PRK08649 inosine 5-monophospha 100.0 9.8E-45 2.1E-49 368.0 27.8 320 23-473 15-363 (368)
17 TIGR01304 IMP_DH_rel_2 IMP deh 100.0 2.9E-34 6.3E-39 290.5 28.1 321 23-473 12-365 (369)
18 cd02811 IDI-2_FMN Isopentenyl- 99.9 1.8E-23 3.8E-28 211.5 22.8 161 259-472 139-326 (326)
19 PRK05437 isopentenyl pyrophosp 99.9 2.1E-22 4.5E-27 205.3 21.6 163 259-473 147-334 (352)
20 PF01070 FMN_dh: FMN-dependent 99.9 3.7E-22 8.1E-27 203.1 21.8 143 275-474 212-354 (356)
21 PLN02493 probable peroxisomal 99.9 9E-22 2E-26 198.7 21.9 143 275-474 211-353 (367)
22 cd02922 FCB2_FMN Flavocytochro 99.9 2.3E-21 5E-26 196.1 23.2 142 275-472 200-343 (344)
23 PLN02979 glycolate oxidase 99.9 1.8E-21 3.9E-26 194.7 22.0 143 275-474 210-352 (366)
24 TIGR02151 IPP_isom_2 isopenten 99.9 1.4E-21 3E-26 198.3 19.7 147 275-473 166-327 (333)
25 cd03332 LMO_FMN L-Lactate 2-mo 99.9 2.7E-21 5.9E-26 196.8 21.6 142 275-473 240-381 (383)
26 cd02809 alpha_hydroxyacid_oxid 99.9 5.4E-21 1.2E-25 191.6 22.4 166 249-471 131-298 (299)
27 PLN02535 glycolate oxidase 99.9 7.9E-21 1.7E-25 192.2 22.2 143 275-474 210-352 (364)
28 TIGR02708 L_lactate_ox L-lacta 99.9 8.7E-21 1.9E-25 191.8 21.8 142 275-473 215-356 (367)
29 cd04736 MDH_FMN Mandelate dehy 99.9 1.7E-20 3.7E-25 189.3 20.0 137 276-471 224-360 (361)
30 KOG0538 Glycolate oxidase [Ene 99.9 2.3E-20 4.9E-25 177.7 19.6 142 275-473 210-351 (363)
31 PRK11197 lldD L-lactate dehydr 99.9 2E-20 4.3E-25 190.1 20.0 141 276-473 233-373 (381)
32 PF03060 NMO: Nitronate monoox 99.9 1.4E-20 3.1E-25 191.0 17.5 232 47-397 2-236 (330)
33 COG1304 idi Isopentenyl diphos 99.8 8.7E-20 1.9E-24 184.4 17.4 142 275-473 205-346 (360)
34 cd04737 LOX_like_FMN L-Lactate 99.8 3.8E-19 8.2E-24 179.8 21.7 141 276-473 209-349 (351)
35 TIGR03151 enACPred_II putative 99.8 3.3E-19 7.2E-24 178.6 18.6 204 47-397 2-207 (307)
36 COG2070 Dioxygenases related t 99.8 1.6E-18 3.4E-23 174.9 14.9 136 249-397 92-230 (336)
37 cd02808 GltS_FMN Glutamate syn 99.8 1.6E-17 3.4E-22 172.0 19.6 170 274-473 199-387 (392)
38 cd04742 NPD_FabD 2-Nitropropan 99.8 3.4E-17 7.3E-22 167.8 18.5 105 277-397 152-265 (418)
39 cd04743 NPD_PKS 2-Nitropropane 99.7 5.1E-17 1.1E-21 161.2 18.6 127 249-391 71-213 (320)
40 TIGR02814 pfaD_fam PfaD family 99.7 7.6E-17 1.7E-21 166.2 16.4 95 296-397 167-270 (444)
41 COG4109 Predicted transcriptio 99.6 1.6E-15 3.5E-20 147.4 10.1 171 23-224 130-308 (432)
42 COG2524 Predicted transcriptio 99.5 1E-14 2.2E-19 136.5 8.0 111 104-222 174-291 (294)
43 PRK07565 dihydroorotate dehydr 99.5 1.3E-12 2.9E-17 133.1 18.2 171 246-474 113-305 (334)
44 cd04603 CBS_pair_KefB_assoc Th 99.4 6.4E-13 1.4E-17 112.9 9.7 100 115-219 4-110 (111)
45 COG3448 CBS-domain-containing 99.4 3.9E-13 8.3E-18 128.1 9.1 110 106-222 249-372 (382)
46 cd04739 DHOD_like Dihydroorota 99.4 1.1E-11 2.3E-16 125.8 18.7 171 246-474 111-303 (325)
47 PLN02495 oxidoreductase, actin 99.4 4.5E-11 9.6E-16 122.5 21.8 172 245-474 125-336 (385)
48 cd04619 CBS_pair_6 The CBS dom 99.4 2.1E-12 4.5E-17 110.2 9.3 100 115-219 4-113 (114)
49 cd04630 CBS_pair_17 The CBS do 99.4 4.4E-12 9.5E-17 108.1 10.2 101 115-220 4-114 (114)
50 PF01645 Glu_synthase: Conserv 99.4 6.3E-12 1.4E-16 127.4 12.8 177 259-465 171-368 (368)
51 PRK10892 D-arabinose 5-phospha 99.3 2.8E-12 6E-17 130.6 9.3 111 103-220 203-323 (326)
52 cd04583 CBS_pair_ABC_OpuCA_ass 99.3 6.1E-12 1.3E-16 105.8 9.7 100 115-219 5-108 (109)
53 cd04730 NPD_like 2-Nitropropan 99.3 1E-10 2.2E-15 113.5 19.4 132 249-396 69-201 (236)
54 COG0516 GuaB IMP dehydrogenase 99.3 2.6E-13 5.6E-18 124.7 0.2 79 23-101 14-92 (170)
55 cd04600 CBS_pair_HPP_assoc Thi 99.3 8E-12 1.7E-16 107.9 9.5 101 115-220 5-124 (124)
56 cd04602 CBS_pair_IMPDH_2 This 99.3 1.1E-11 2.3E-16 105.8 10.1 103 115-219 5-113 (114)
57 cd04618 CBS_pair_5 The CBS dom 99.3 1.1E-11 2.4E-16 103.2 9.6 89 115-219 4-97 (98)
58 cd04740 DHOD_1B_like Dihydroor 99.3 1.7E-10 3.6E-15 115.9 19.2 168 246-472 101-294 (296)
59 cd04607 CBS_pair_NTP_transfera 99.3 1.5E-11 3.3E-16 104.5 9.9 100 115-219 5-112 (113)
60 cd04801 CBS_pair_M50_like This 99.3 1.5E-11 3.2E-16 104.7 9.9 102 115-219 4-113 (114)
61 cd04596 CBS_pair_DRTGG_assoc T 99.3 1.6E-11 3.4E-16 103.6 9.6 99 115-219 5-107 (108)
62 cd04601 CBS_pair_IMPDH This cd 99.3 2.4E-11 5.2E-16 102.3 10.6 100 115-219 5-109 (110)
63 cd04641 CBS_pair_28 The CBS do 99.3 1.6E-11 3.4E-16 105.7 9.6 100 115-219 4-119 (120)
64 PRK11543 gutQ D-arabinose 5-ph 99.3 8.7E-12 1.9E-16 126.7 9.2 110 104-220 199-318 (321)
65 cd04617 CBS_pair_4 The CBS dom 99.3 2E-11 4.2E-16 104.9 9.7 102 115-219 4-117 (118)
66 cd04614 CBS_pair_1 The CBS dom 99.3 2.1E-11 4.6E-16 101.0 9.5 89 115-220 4-96 (96)
67 cd04626 CBS_pair_13 The CBS do 99.3 2.3E-11 5E-16 102.9 9.7 100 115-219 4-110 (111)
68 cd04639 CBS_pair_26 The CBS do 99.3 2E-11 4.4E-16 103.2 8.8 100 115-219 4-110 (111)
69 cd04605 CBS_pair_MET2_assoc Th 99.3 2.9E-11 6.3E-16 102.0 9.7 100 115-219 5-109 (110)
70 cd04608 CBS_pair_PALP_assoc Th 99.3 1.1E-11 2.4E-16 107.8 7.2 101 115-220 5-123 (124)
71 cd04582 CBS_pair_ABC_OpuCA_ass 99.3 3.2E-11 7E-16 101.0 9.8 98 115-219 4-105 (106)
72 cd04629 CBS_pair_16 The CBS do 99.2 2.5E-11 5.5E-16 103.0 8.9 100 115-219 4-113 (114)
73 PRK07259 dihydroorotate dehydr 99.2 3.3E-10 7.1E-15 114.0 18.3 170 245-473 102-298 (301)
74 cd04621 CBS_pair_8 The CBS dom 99.2 3.2E-11 7E-16 106.5 9.7 100 115-219 4-134 (135)
75 cd04599 CBS_pair_GGDEF_assoc2 99.2 6.7E-11 1.4E-15 98.8 10.8 98 115-219 4-104 (105)
76 PF04131 NanE: Putative N-acet 99.2 1.2E-10 2.7E-15 105.8 13.2 124 249-384 53-177 (192)
77 cd04623 CBS_pair_10 The CBS do 99.2 4.9E-11 1.1E-15 100.8 10.1 100 115-219 4-112 (113)
78 cd04642 CBS_pair_29 The CBS do 99.2 2.9E-11 6.3E-16 105.1 8.8 100 115-219 4-125 (126)
79 cd04606 CBS_pair_Mg_transporte 99.2 4.2E-11 9.1E-16 101.1 9.5 98 117-220 2-108 (109)
80 cd04593 CBS_pair_EriC_assoc_ba 99.2 4.3E-11 9.2E-16 102.0 9.6 101 115-220 4-115 (115)
81 cd04640 CBS_pair_27 The CBS do 99.2 2.9E-11 6.4E-16 105.1 8.6 100 115-219 4-125 (126)
82 TIGR01037 pyrD_sub1_fam dihydr 99.2 6.3E-10 1.4E-14 112.0 19.5 169 246-473 102-298 (300)
83 PRK01862 putative voltage-gate 99.2 1.8E-11 3.9E-16 133.9 9.0 163 43-222 392-571 (574)
84 cd04594 CBS_pair_EriC_assoc_ar 99.2 5.8E-11 1.3E-15 99.5 10.0 97 115-219 4-103 (104)
85 cd04643 CBS_pair_30 The CBS do 99.2 3.1E-11 6.7E-16 102.8 8.5 99 115-220 4-116 (116)
86 cd04586 CBS_pair_BON_assoc Thi 99.2 2.8E-11 6.1E-16 106.5 8.4 100 115-219 5-134 (135)
87 cd04615 CBS_pair_2 The CBS dom 99.2 4.8E-11 1E-15 101.2 9.5 100 115-219 4-112 (113)
88 cd04635 CBS_pair_22 The CBS do 99.2 4.6E-11 1E-15 102.8 9.4 101 115-220 4-122 (122)
89 cd04624 CBS_pair_11 The CBS do 99.2 5.1E-11 1.1E-15 100.9 9.5 100 115-219 4-111 (112)
90 cd04803 CBS_pair_15 The CBS do 99.2 4.3E-11 9.2E-16 103.0 9.0 100 115-219 4-121 (122)
91 cd04631 CBS_pair_18 The CBS do 99.2 4.6E-11 9.9E-16 103.3 9.1 100 115-219 4-124 (125)
92 cd04627 CBS_pair_14 The CBS do 99.2 5E-11 1.1E-15 103.0 9.3 99 115-218 4-121 (123)
93 COG0069 GltB Glutamate synthas 99.2 7.7E-11 1.7E-15 121.9 12.1 170 274-473 288-476 (485)
94 cd04625 CBS_pair_12 The CBS do 99.2 6.4E-11 1.4E-15 100.2 9.7 100 115-219 4-111 (112)
95 cd04595 CBS_pair_DHH_polyA_Pol 99.2 7.2E-11 1.6E-15 99.7 9.8 99 115-219 5-109 (110)
96 cd04589 CBS_pair_CAP-ED_DUF294 99.2 8.9E-11 1.9E-15 99.3 9.9 99 115-219 4-110 (111)
97 cd04590 CBS_pair_CorC_HlyC_ass 99.2 6.4E-11 1.4E-15 100.1 9.0 99 115-219 4-110 (111)
98 cd04620 CBS_pair_7 The CBS dom 99.2 7.8E-11 1.7E-15 100.3 9.4 99 115-219 4-114 (115)
99 COG0167 PyrD Dihydroorotate de 99.2 9.4E-10 2E-14 109.0 18.3 171 246-474 108-307 (310)
100 PLN02826 dihydroorotate dehydr 99.2 1.2E-09 2.5E-14 113.3 19.0 156 260-472 216-405 (409)
101 TIGR00400 mgtE Mg2+ transporte 99.2 1.6E-10 3.5E-15 122.4 12.7 121 95-223 119-253 (449)
102 cd04613 CBS_pair_SpoIVFB_EriC_ 99.2 1.1E-10 2.4E-15 98.8 9.3 100 115-219 4-113 (114)
103 COG3620 Predicted transcriptio 99.2 3.7E-11 8E-16 104.8 6.3 109 104-222 67-184 (187)
104 cd04632 CBS_pair_19 The CBS do 99.2 9.6E-11 2.1E-15 101.9 9.1 100 115-219 4-127 (128)
105 cd04610 CBS_pair_ParBc_assoc T 99.2 1.7E-10 3.7E-15 96.6 10.3 98 115-219 5-106 (107)
106 cd04636 CBS_pair_23 The CBS do 99.2 1.1E-10 2.3E-15 102.4 9.2 100 115-219 4-131 (132)
107 cd04800 CBS_pair_CAP-ED_DUF294 99.2 1.8E-10 4E-15 97.3 10.1 99 115-219 4-110 (111)
108 COG2905 Predicted signal-trans 99.2 5.3E-11 1.2E-15 123.1 7.9 112 104-222 151-270 (610)
109 COG0516 GuaB IMP dehydrogenase 99.2 1.5E-10 3.2E-15 106.4 10.0 166 279-497 4-169 (170)
110 cd04611 CBS_pair_PAS_GGDEF_DUF 99.2 1.8E-10 3.8E-15 97.2 9.7 99 115-219 4-110 (111)
111 PRK02506 dihydroorotate dehydr 99.2 8.5E-10 1.8E-14 111.1 16.2 171 245-473 103-306 (310)
112 cd04587 CBS_pair_CAP-ED_DUF294 99.2 1.5E-10 3.3E-15 98.0 9.1 99 115-219 4-112 (113)
113 cd04612 CBS_pair_SpoIVFB_EriC_ 99.2 1.8E-10 3.9E-15 97.1 9.4 99 115-219 4-110 (111)
114 cd04588 CBS_pair_CAP-ED_DUF294 99.2 2E-10 4.4E-15 96.8 9.7 99 115-219 4-109 (110)
115 cd04585 CBS_pair_ACT_assoc2 Th 99.1 1.9E-10 4.1E-15 98.5 9.6 99 115-219 4-121 (122)
116 cd04802 CBS_pair_3 The CBS dom 99.1 3E-10 6.5E-15 96.1 10.4 99 115-219 4-111 (112)
117 PRK15094 magnesium/cobalt effl 99.1 1.8E-10 4E-15 114.9 10.4 126 93-223 53-190 (292)
118 cd04622 CBS_pair_9 The CBS dom 99.1 2.7E-10 5.9E-15 96.4 9.8 99 115-219 4-112 (113)
119 cd04591 CBS_pair_EriC_assoc_eu 99.1 2.2E-10 4.8E-15 96.5 8.8 97 115-219 5-104 (105)
120 cd04633 CBS_pair_20 The CBS do 99.1 2.8E-10 6E-15 97.7 9.6 99 115-219 4-120 (121)
121 cd04604 CBS_pair_KpsF_GutQ_ass 99.1 2.5E-10 5.5E-15 96.7 9.1 100 115-219 5-113 (114)
122 cd04637 CBS_pair_24 The CBS do 99.1 2.5E-10 5.5E-15 98.2 8.8 99 115-219 4-121 (122)
123 TIGR03520 GldE gliding motilit 99.1 3.8E-10 8.2E-15 117.9 11.1 125 93-222 177-311 (408)
124 cd04584 CBS_pair_ACT_assoc Thi 99.1 3.9E-10 8.4E-15 96.7 9.1 100 115-219 4-120 (121)
125 COG0517 FOG: CBS domain [Gener 99.1 6.3E-10 1.4E-14 94.7 10.3 101 110-218 7-117 (117)
126 PRK08318 dihydropyrimidine deh 99.1 3.8E-09 8.2E-14 111.2 18.0 170 246-473 112-318 (420)
127 cd04638 CBS_pair_25 The CBS do 99.1 8.2E-10 1.8E-14 92.6 10.1 99 115-219 4-105 (106)
128 PRK11750 gltB glutamate syntha 99.1 7.2E-10 1.6E-14 127.3 12.5 167 274-470 981-1165(1485)
129 cd02940 DHPD_FMN Dihydropyrimi 99.1 3E-09 6.4E-14 106.9 15.5 138 246-384 112-285 (299)
130 TIGR00393 kpsF KpsF/GutQ famil 99.0 5.2E-10 1.1E-14 110.6 8.8 106 101-213 154-268 (268)
131 COG2239 MgtE Mg/Co/Ni transpor 99.0 7.3E-10 1.6E-14 115.5 9.9 123 93-223 118-254 (451)
132 PRK01130 N-acetylmannosamine-6 99.0 4.2E-09 9.1E-14 101.2 14.5 127 250-385 78-207 (221)
133 cd04609 CBS_pair_PALP_assoc2 T 99.0 8.9E-10 1.9E-14 92.6 8.4 97 115-219 4-109 (110)
134 PRK05567 inosine 5'-monophosph 99.0 1E-08 2.2E-13 109.8 18.2 195 165-380 88-297 (486)
135 cd04634 CBS_pair_21 The CBS do 99.0 1.4E-09 3.1E-14 96.9 9.4 99 115-219 4-142 (143)
136 cd02205 CBS_pair The CBS domai 99.0 1.7E-09 3.6E-14 90.4 8.8 100 115-219 4-112 (113)
137 cd02810 DHOD_DHPD_FMN Dihydroo 99.0 7.1E-09 1.5E-13 103.7 14.9 139 246-385 110-277 (289)
138 TIGR01182 eda Entner-Doudoroff 99.0 1.1E-08 2.4E-13 95.9 14.9 110 245-379 18-127 (204)
139 cd04598 CBS_pair_GGDEF_assoc T 99.0 2.6E-09 5.5E-14 91.4 8.7 99 115-219 4-118 (119)
140 PRK06015 keto-hydroxyglutarate 98.9 2.9E-08 6.3E-13 92.9 15.0 110 245-379 14-123 (201)
141 PRK07114 keto-hydroxyglutarate 98.9 4.4E-08 9.5E-13 93.2 16.3 110 245-379 25-138 (222)
142 TIGR01302 IMP_dehydrog inosine 98.9 3.9E-08 8.4E-13 104.2 17.7 194 165-380 81-293 (450)
143 COG0800 Eda 2-keto-3-deoxy-6-p 98.9 2.7E-08 5.8E-13 92.4 14.2 109 245-378 23-131 (211)
144 PLN02274 inosine-5'-monophosph 98.9 4.6E-08 1E-12 104.4 17.7 193 168-380 104-317 (505)
145 cd04729 NanE N-acetylmannosami 98.9 3.4E-08 7.3E-13 94.8 15.1 128 250-386 82-212 (219)
146 PRK05286 dihydroorotate dehydr 98.9 2.5E-08 5.4E-13 102.0 15.0 135 249-384 159-322 (344)
147 PRK07807 inosine 5-monophospha 98.9 3.8E-08 8.2E-13 104.3 16.4 196 163-380 88-296 (479)
148 PF01081 Aldolase: KDPG and KH 98.9 3E-08 6.5E-13 92.5 13.7 110 245-379 18-127 (196)
149 PRK05718 keto-hydroxyglutarate 98.9 5.1E-08 1.1E-12 92.4 15.5 109 246-379 26-134 (212)
150 TIGR01303 IMP_DH_rel_1 IMP deh 98.9 2.2E-07 4.9E-12 98.4 21.8 195 164-380 88-294 (475)
151 TIGR01137 cysta_beta cystathio 98.9 5.6E-09 1.2E-13 111.2 9.6 109 103-221 336-453 (454)
152 cd02911 arch_FMN Archeal FMN-b 98.9 1.8E-07 4E-12 90.3 19.2 118 247-382 85-222 (233)
153 PF01180 DHO_dh: Dihydroorotat 98.9 3.3E-08 7.1E-13 99.3 13.9 135 248-384 113-277 (295)
154 COG3010 NanE Putative N-acetyl 98.8 7.8E-08 1.7E-12 87.9 14.0 127 249-386 87-215 (229)
155 TIGR00737 nifR3_yhdG putative 98.8 1.4E-07 3E-12 95.7 16.6 129 246-385 74-227 (319)
156 PTZ00314 inosine-5'-monophosph 98.8 1.3E-07 2.8E-12 101.0 16.5 195 166-380 98-310 (495)
157 cd04592 CBS_pair_EriC_assoc_eu 98.8 1.4E-08 3E-13 89.6 7.4 86 115-205 4-117 (133)
158 PRK07107 inosine 5-monophospha 98.8 1.7E-07 3.7E-12 100.0 16.9 188 175-380 106-312 (502)
159 PRK11573 hypothetical protein; 98.8 3.8E-08 8.2E-13 103.0 11.6 116 103-223 188-312 (413)
160 cd04741 DHOD_1A_like Dihydroor 98.8 8.9E-08 1.9E-12 95.9 13.8 138 246-384 102-276 (294)
161 TIGR01036 pyrD_sub2 dihydrooro 98.8 6.7E-08 1.4E-12 98.3 13.0 135 250-384 154-321 (335)
162 PRK10415 tRNA-dihydrouridine s 98.8 4.1E-07 8.8E-12 92.2 18.1 129 247-385 77-229 (321)
163 cd04738 DHOD_2_like Dihydrooro 98.8 1.1E-07 2.5E-12 96.6 13.9 125 260-384 160-313 (327)
164 cd04732 HisA HisA. Phosphorib 98.8 4.1E-07 9E-12 88.1 17.2 176 184-384 30-223 (234)
165 PRK06552 keto-hydroxyglutarate 98.7 2.3E-07 5E-12 88.1 14.6 110 245-379 23-135 (213)
166 TIGR00736 nifR3_rel_arch TIM-b 98.7 2.8E-07 6E-12 88.3 13.9 125 245-384 78-224 (231)
167 cd04727 pdxS PdxS is a subunit 98.7 3.6E-07 7.8E-12 88.4 14.6 129 249-385 76-230 (283)
168 cd00331 IGPS Indole-3-glycerol 98.7 1E-06 2.3E-11 84.3 17.8 178 180-385 28-206 (217)
169 COG1253 TlyC Hemolysins and re 98.7 1.1E-07 2.3E-12 100.5 11.6 124 95-223 194-329 (429)
170 PF00571 CBS: CBS domain CBS d 98.7 3.1E-08 6.7E-13 73.5 5.3 54 166-221 1-55 (57)
171 TIGR00343 pyridoxal 5'-phospha 98.7 2.1E-07 4.6E-12 90.1 12.4 128 249-385 78-233 (287)
172 PRK14869 putative manganese-de 98.7 3.5E-08 7.5E-13 107.5 8.0 113 103-222 69-304 (546)
173 TIGR00007 phosphoribosylformim 98.7 1.4E-06 3.1E-11 84.1 17.5 176 183-385 28-223 (230)
174 cd02801 DUS_like_FMN Dihydrour 98.6 6.9E-07 1.5E-11 86.3 14.4 131 245-385 65-218 (231)
175 PRK04180 pyridoxal biosynthesi 98.6 6.5E-07 1.4E-11 87.0 13.3 129 249-385 85-239 (293)
176 PRK13587 1-(5-phosphoribosyl)- 98.6 1.4E-06 3E-11 84.3 15.3 133 248-384 32-225 (234)
177 COG0107 HisF Imidazoleglycerol 98.6 8E-07 1.7E-11 82.9 12.5 131 247-384 30-233 (256)
178 PRK14024 phosphoribosyl isomer 98.6 1.6E-06 3.5E-11 84.4 15.1 132 248-384 33-226 (241)
179 PRK13585 1-(5-phosphoribosyl)- 98.6 2.8E-06 6E-11 82.7 16.6 177 184-385 33-227 (241)
180 PRK00278 trpC indole-3-glycero 98.5 6.3E-06 1.4E-10 81.0 18.6 180 179-386 66-246 (260)
181 PRK00748 1-(5-phosphoribosyl)- 98.5 6E-06 1.3E-10 79.9 17.5 178 182-384 29-224 (233)
182 TIGR03572 WbuZ glycosyl amidat 98.5 7.4E-06 1.6E-10 79.3 17.5 174 183-383 30-230 (232)
183 cd04722 TIM_phosphate_binding 98.5 2.5E-06 5.4E-11 79.4 13.2 122 253-381 77-200 (200)
184 KOG0475 Cl- channel CLC-3 and 98.5 3.3E-07 7.2E-12 96.2 7.8 171 42-221 485-694 (696)
185 cd00452 KDPG_aldolase KDPG and 98.5 3.8E-06 8.2E-11 78.7 14.2 110 245-379 14-123 (190)
186 cd02803 OYE_like_FMN_family Ol 98.5 2.9E-06 6.3E-11 86.4 14.3 137 248-385 142-316 (327)
187 PRK01033 imidazole glycerol ph 98.4 1.9E-05 4.2E-10 77.6 17.4 176 183-385 30-231 (258)
188 cd04731 HisF The cyclase subun 98.4 2.1E-05 4.5E-10 76.7 17.2 175 183-384 27-227 (243)
189 PF00977 His_biosynth: Histidi 98.4 6.1E-06 1.3E-10 79.7 13.1 134 247-384 29-224 (229)
190 PRK10550 tRNA-dihydrouridine s 98.4 7.2E-06 1.6E-10 82.7 14.1 131 245-385 73-229 (312)
191 PRK02083 imidazole glycerol ph 98.3 1.1E-05 2.5E-10 79.0 15.0 133 248-384 31-231 (253)
192 PRK00208 thiG thiazole synthas 98.3 1.2E-05 2.6E-10 76.6 14.4 125 248-385 77-209 (250)
193 PRK09140 2-dehydro-3-deoxy-6-p 98.3 1.2E-05 2.7E-10 76.1 14.6 110 245-379 20-130 (206)
194 PRK11815 tRNA-dihydrouridine s 98.3 7E-06 1.5E-10 83.7 13.7 136 245-385 75-238 (333)
195 TIGR00735 hisF imidazoleglycer 98.3 1.7E-05 3.8E-10 77.8 15.5 178 182-384 29-233 (254)
196 COG4535 CorC Putative Mg2+ and 98.3 3.9E-07 8.6E-12 84.9 3.4 116 103-223 68-190 (293)
197 cd04728 ThiG Thiazole synthase 98.3 1.7E-05 3.6E-10 75.6 14.4 127 249-385 78-209 (248)
198 KOG1764 5'-AMP-activated prote 98.3 1.7E-06 3.8E-11 89.3 8.4 107 115-224 240-361 (381)
199 PRK14114 1-(5-phosphoribosyl)- 98.3 2.5E-05 5.5E-10 75.8 16.0 132 247-383 30-226 (241)
200 TIGR00742 yjbN tRNA dihydrouri 98.3 1.6E-05 3.4E-10 80.4 14.6 135 245-385 65-228 (318)
201 cd04726 KGPDC_HPS 3-Keto-L-gul 98.3 4.1E-05 8.8E-10 72.3 16.6 122 251-385 68-191 (202)
202 COG0106 HisA Phosphoribosylfor 98.3 6.1E-05 1.3E-09 71.7 17.2 174 184-384 32-225 (241)
203 KOG0474 Cl- channel CLC-7 and 98.3 4.1E-07 8.9E-12 95.4 2.6 164 47-221 529-746 (762)
204 PRK07455 keto-hydroxyglutarate 98.2 3.6E-05 7.7E-10 71.9 15.0 133 246-384 23-184 (187)
205 cd04723 HisA_HisF Phosphoribos 98.2 2.5E-05 5.3E-10 75.6 14.3 133 247-384 35-222 (233)
206 PRK14869 putative manganese-de 98.2 1.3E-05 2.8E-10 87.5 13.4 191 163-370 67-303 (546)
207 COG4536 CorB Putative Mg2+ and 98.2 1.9E-06 4.2E-11 85.7 5.7 119 103-223 201-325 (423)
208 COG2524 Predicted transcriptio 98.2 5.1E-06 1.1E-10 78.7 8.1 108 162-273 170-277 (294)
209 TIGR01186 proV glycine betaine 98.2 6E-06 1.3E-10 85.0 9.5 102 115-222 253-358 (363)
210 PRK07695 transcriptional regul 98.2 2.7E-05 5.9E-10 73.6 13.1 117 253-385 66-182 (201)
211 PRK10070 glycine betaine trans 98.1 6.7E-06 1.5E-10 85.7 8.9 100 117-222 290-393 (400)
212 cd02931 ER_like_FMN Enoate red 98.1 4.9E-05 1.1E-09 79.0 14.9 137 248-386 151-341 (382)
213 PF05690 ThiG: Thiazole biosyn 98.1 4.3E-05 9.3E-10 72.0 12.8 127 248-386 77-210 (247)
214 cd02932 OYE_YqiM_FMN Old yello 98.1 2.6E-05 5.6E-10 79.8 12.4 134 248-386 155-326 (336)
215 PRK09140 2-dehydro-3-deoxy-6-p 98.1 0.00011 2.3E-09 69.7 15.5 122 236-384 62-183 (206)
216 PRK13586 1-(5-phosphoribosyl)- 98.1 0.00013 2.8E-09 70.4 16.0 130 248-383 31-221 (232)
217 COG3448 CBS-domain-containing 98.1 7.9E-06 1.7E-10 78.8 7.2 108 162-272 243-357 (382)
218 PRK04128 1-(5-phosphoribosyl)- 98.1 0.00013 2.7E-09 70.4 15.6 133 248-383 31-214 (228)
219 PLN02334 ribulose-phosphate 3- 98.1 0.0011 2.3E-08 64.1 21.6 181 184-384 21-206 (229)
220 cd04733 OYE_like_2_FMN Old yel 98.0 9.2E-05 2E-09 75.8 14.8 139 248-386 150-328 (338)
221 PRK00043 thiE thiamine-phospha 98.0 6.9E-05 1.5E-09 71.2 12.8 121 251-385 72-193 (212)
222 TIGR00734 hisAF_rel hisA/hisF 98.0 0.00016 3.5E-09 69.3 15.3 131 247-384 36-217 (221)
223 COG0042 tRNA-dihydrouridine sy 98.0 0.00014 3.1E-09 73.6 15.6 131 246-384 78-232 (323)
224 PF00218 IGPS: Indole-3-glycer 98.0 0.00013 2.8E-09 71.0 14.5 138 246-386 67-244 (254)
225 PRK13523 NADPH dehydrogenase N 98.0 4.3E-05 9.3E-10 77.9 11.7 131 249-386 144-311 (337)
226 TIGR03128 RuMP_HxlA 3-hexulose 98.0 0.00035 7.6E-09 66.2 16.9 121 252-385 68-191 (206)
227 PRK07114 keto-hydroxyglutarate 98.0 0.00024 5.2E-09 67.8 15.4 123 236-385 70-193 (222)
228 cd04734 OYE_like_3_FMN Old yel 98.0 8E-05 1.7E-09 76.3 13.1 135 248-386 142-321 (343)
229 cd00452 KDPG_aldolase KDPG and 98.0 7.5E-05 1.6E-09 69.9 11.9 119 237-384 56-175 (190)
230 cd04735 OYE_like_4_FMN Old yel 98.0 4.4E-05 9.6E-10 78.5 11.2 134 248-386 145-319 (353)
231 CHL00162 thiG thiamin biosynth 98.0 0.00011 2.4E-09 70.1 12.3 100 275-386 125-224 (267)
232 PRK04302 triosephosphate isome 97.9 0.00022 4.8E-09 68.6 14.3 129 251-386 76-208 (223)
233 PLN02446 (5-phosphoribosyl)-5- 97.9 0.0011 2.5E-08 64.4 19.1 175 182-383 42-241 (262)
234 COG1902 NemA NADH:flavin oxido 97.9 0.00015 3.3E-09 74.4 13.7 135 248-386 150-324 (363)
235 cd00956 Transaldolase_FSA Tran 97.9 0.0003 6.6E-09 66.9 14.6 123 246-384 63-189 (211)
236 cd02933 OYE_like_FMN Old yello 97.9 0.00015 3.3E-09 74.0 13.4 128 248-386 153-320 (338)
237 PRK13957 indole-3-glycerol-pho 97.9 0.00044 9.6E-09 66.8 15.6 136 248-386 62-236 (247)
238 PF04481 DUF561: Protein of un 97.9 0.00013 2.9E-09 67.6 11.3 128 251-383 72-217 (242)
239 cd00945 Aldolase_Class_I Class 97.9 0.00047 1E-08 64.4 15.6 124 246-380 64-201 (201)
240 PRK06552 keto-hydroxyglutarate 97.9 0.0003 6.5E-09 66.9 14.1 121 236-384 67-187 (213)
241 TIGR01919 hisA-trpF 1-(5-phosp 97.9 0.0006 1.3E-08 66.3 16.5 173 184-383 32-228 (243)
242 cd00564 TMP_TenI Thiamine mono 97.9 0.00023 4.9E-09 66.4 12.9 118 253-386 65-184 (196)
243 TIGR01182 eda Entner-Doudoroff 97.9 0.00031 6.6E-09 66.2 13.5 122 236-384 59-180 (204)
244 cd02930 DCR_FMN 2,4-dienoyl-Co 97.9 0.00013 2.8E-09 75.1 11.9 137 248-386 138-312 (353)
245 PLN02617 imidazole glycerol ph 97.8 0.0012 2.6E-08 71.2 18.9 183 184-384 268-516 (538)
246 PRK13125 trpA tryptophan synth 97.8 0.00051 1.1E-08 67.0 14.5 126 249-384 90-218 (244)
247 PRK05848 nicotinate-nucleotide 97.8 0.00022 4.9E-09 70.2 11.8 92 275-384 167-261 (273)
248 cd04597 CBS_pair_DRTGG_assoc2 97.8 3.8E-05 8.3E-10 65.4 5.4 55 163-219 57-112 (113)
249 PF01081 Aldolase: KDPG and KH 97.8 0.00022 4.8E-09 66.7 10.4 122 236-384 59-180 (196)
250 COG3620 Predicted transcriptio 97.7 2.9E-05 6.2E-10 68.4 4.1 57 165-223 66-122 (187)
251 TIGR00262 trpA tryptophan synt 97.7 0.00082 1.8E-08 65.9 14.9 126 249-384 104-231 (256)
252 PF00571 CBS: CBS domain CBS d 97.7 2E-05 4.3E-10 58.2 2.6 46 107-157 4-52 (57)
253 PLN02460 indole-3-glycerol-pho 97.7 0.00073 1.6E-08 68.0 14.2 137 248-386 140-323 (338)
254 PF01207 Dus: Dihydrouridine s 97.7 0.00017 3.6E-09 72.9 9.9 130 246-385 65-218 (309)
255 PRK11840 bifunctional sulfur c 97.7 0.00091 2E-08 66.6 14.4 128 248-385 151-283 (326)
256 PF00724 Oxidored_FMN: NADH:fl 97.7 0.00012 2.6E-09 75.0 8.6 138 248-385 150-326 (341)
257 COG0134 TrpC Indole-3-glycerol 97.7 0.001 2.2E-08 64.2 13.9 136 248-386 67-242 (254)
258 KOG2335 tRNA-dihydrouridine sy 97.7 0.00083 1.8E-08 67.2 13.6 141 234-384 73-237 (358)
259 cd04618 CBS_pair_5 The CBS dom 97.6 0.00033 7.2E-09 57.9 9.0 76 175-267 2-79 (98)
260 PRK13802 bifunctional indole-3 97.6 0.0017 3.6E-08 71.9 16.9 181 179-387 66-247 (695)
261 COG1646 Predicted phosphate-bi 97.6 0.0014 3E-08 61.8 13.8 133 248-383 29-223 (240)
262 TIGR00693 thiE thiamine-phosph 97.6 0.00085 1.8E-08 63.0 12.5 120 253-386 66-186 (196)
263 PRK08255 salicylyl-CoA 5-hydro 97.6 0.00065 1.4E-08 77.1 13.7 133 249-386 553-723 (765)
264 PRK00507 deoxyribose-phosphate 97.6 0.0029 6.2E-08 60.6 16.0 123 249-382 76-210 (221)
265 cd04747 OYE_like_5_FMN Old yel 97.6 0.001 2.2E-08 68.4 13.7 130 248-386 145-334 (361)
266 cd00958 DhnA Class I fructose- 97.6 0.0036 7.7E-08 60.6 16.8 119 249-386 78-220 (235)
267 PRK07028 bifunctional hexulose 97.6 0.001 2.3E-08 70.4 13.9 122 251-386 72-196 (430)
268 cd02929 TMADH_HD_FMN Trimethyl 97.6 0.0011 2.4E-08 68.6 13.6 134 248-386 151-325 (370)
269 CHL00200 trpA tryptophan synth 97.6 0.0052 1.1E-07 60.4 17.5 125 249-385 108-236 (263)
270 PLN02591 tryptophan synthase 97.6 0.0046 9.9E-08 60.3 16.9 161 178-385 56-223 (250)
271 PRK10605 N-ethylmaleimide redu 97.5 0.0015 3.4E-08 67.3 14.3 127 248-386 160-327 (362)
272 PRK06015 keto-hydroxyglutarate 97.5 0.0021 4.6E-08 60.3 13.7 121 236-384 55-176 (201)
273 PRK04169 geranylgeranylglycery 97.5 0.00091 2E-08 64.2 11.4 128 251-384 23-217 (232)
274 PRK07226 fructose-bisphosphate 97.5 0.0016 3.5E-08 64.3 13.6 119 249-385 95-236 (267)
275 cd00959 DeoC 2-deoxyribose-5-p 97.5 0.0019 4.1E-08 61.2 13.4 119 249-378 71-201 (203)
276 KOG2550 IMP dehydrogenase/GMP 97.5 0.00093 2E-08 67.5 11.5 188 103-317 172-383 (503)
277 PRK02615 thiamine-phosphate py 97.5 0.0012 2.5E-08 67.4 12.3 118 253-385 210-327 (347)
278 PRK13111 trpA tryptophan synth 97.5 0.0066 1.4E-07 59.5 16.9 123 249-385 106-233 (258)
279 COG2022 ThiG Uncharacterized e 97.5 0.0024 5.2E-08 60.0 12.9 87 290-386 131-217 (262)
280 KOG1436 Dihydroorotate dehydro 97.5 0.00032 7E-09 68.5 7.5 167 250-473 196-396 (398)
281 cd04614 CBS_pair_1 The CBS dom 97.5 0.00075 1.6E-08 55.4 8.8 75 175-266 2-77 (96)
282 PRK08883 ribulose-phosphate 3- 97.4 0.0043 9.3E-08 59.4 14.8 128 248-384 69-199 (220)
283 PRK05718 keto-hydroxyglutarate 97.4 0.0051 1.1E-07 58.5 14.9 122 236-384 66-187 (212)
284 cd00331 IGPS Indole-3-glycerol 97.4 0.0052 1.1E-07 58.7 15.2 121 245-382 29-150 (217)
285 TIGR01768 GGGP-family geranylg 97.4 0.002 4.3E-08 61.4 11.9 131 249-384 16-212 (223)
286 cd01573 modD_like ModD; Quinol 97.4 0.0016 3.5E-08 64.3 11.6 89 277-383 171-261 (272)
287 PF01791 DeoC: DeoC/LacD famil 97.4 0.0013 2.7E-08 63.9 10.7 123 250-383 79-233 (236)
288 TIGR00126 deoC deoxyribose-pho 97.4 0.0082 1.8E-07 57.0 15.8 120 249-379 72-203 (211)
289 PRK06512 thiamine-phosphate py 97.4 0.0029 6.3E-08 60.6 12.8 116 253-385 80-197 (221)
290 TIGR01163 rpe ribulose-phospha 97.4 0.0057 1.2E-07 57.9 14.8 127 249-385 68-198 (210)
291 PRK09427 bifunctional indole-3 97.3 0.0088 1.9E-07 63.3 17.1 133 248-385 71-243 (454)
292 cd04724 Tryptophan_synthase_al 97.3 0.0054 1.2E-07 59.7 14.1 126 250-385 94-220 (242)
293 smart00116 CBS Domain in cysta 97.3 0.00054 1.2E-08 47.3 5.2 46 176-221 2-48 (49)
294 TIGR02129 hisA_euk phosphoribo 97.3 0.018 4E-07 55.9 17.1 175 179-383 34-235 (253)
295 cd04592 CBS_pair_EriC_assoc_eu 97.3 0.0019 4.1E-08 56.8 9.4 48 175-222 2-50 (133)
296 TIGR00735 hisF imidazoleglycer 97.3 0.001 2.2E-08 65.3 8.5 77 300-387 33-110 (254)
297 PF01884 PcrB: PcrB family; I 97.2 0.0027 5.8E-08 60.7 10.8 34 350-383 181-214 (230)
298 cd04641 CBS_pair_28 The CBS do 97.2 0.00066 1.4E-08 57.9 6.1 47 175-221 2-49 (120)
299 PLN02411 12-oxophytodienoate r 97.2 0.0051 1.1E-07 64.1 13.5 138 248-387 166-349 (391)
300 TIGR01769 GGGP geranylgeranylg 97.2 0.0093 2E-07 56.2 13.9 41 337-380 165-205 (205)
301 TIGR03128 RuMP_HxlA 3-hexulose 97.2 0.0036 7.8E-08 59.2 11.4 130 237-383 2-136 (206)
302 PRK07428 nicotinate-nucleotide 97.2 0.0039 8.5E-08 61.9 11.8 91 276-384 182-275 (288)
303 PRK00278 trpC indole-3-glycero 97.2 0.011 2.4E-07 58.2 14.8 118 247-381 70-188 (260)
304 TIGR03520 GldE gliding motilit 97.2 0.0014 3E-08 68.8 8.9 60 162-221 189-250 (408)
305 PF03437 BtpA: BtpA family; I 97.1 0.023 4.9E-07 55.4 16.2 207 145-384 3-231 (254)
306 TIGR01949 AroFGH_arch predicte 97.1 0.0059 1.3E-07 60.0 12.5 117 251-385 94-232 (258)
307 cd04731 HisF The cyclase subun 97.1 0.0014 3.1E-08 63.8 8.0 77 299-386 29-106 (243)
308 cd00429 RPE Ribulose-5-phospha 97.1 0.011 2.4E-07 55.9 13.7 125 250-385 70-199 (211)
309 PF04131 NanE: Putative N-acet 97.1 0.075 1.6E-06 49.0 18.0 73 238-317 94-173 (192)
310 PRK05742 nicotinate-nucleotide 97.1 0.0067 1.4E-07 60.0 12.1 89 277-384 177-265 (277)
311 PRK02083 imidazole glycerol ph 97.1 0.002 4.4E-08 63.2 8.4 77 300-387 33-110 (253)
312 PRK08385 nicotinate-nucleotide 97.1 0.0065 1.4E-07 60.0 11.9 92 275-384 168-263 (278)
313 PRK10892 D-arabinose 5-phospha 97.1 0.0028 6.1E-08 64.5 9.8 58 164-221 202-260 (326)
314 COG0352 ThiE Thiamine monophos 97.1 0.0066 1.4E-07 57.5 11.4 119 252-385 73-191 (211)
315 cd04643 CBS_pair_30 The CBS do 97.1 0.0012 2.6E-08 55.6 5.8 47 175-221 2-49 (116)
316 cd04582 CBS_pair_ABC_OpuCA_ass 97.1 0.003 6.4E-08 52.2 8.2 85 175-266 2-87 (106)
317 PRK11543 gutQ D-arabinose 5-ph 97.0 0.0031 6.8E-08 64.0 9.8 57 163-221 196-255 (321)
318 PF02581 TMP-TENI: Thiamine mo 97.0 0.0059 1.3E-07 56.6 10.8 114 253-382 65-179 (180)
319 PRK05581 ribulose-phosphate 3- 97.0 0.016 3.4E-07 55.4 14.0 126 249-385 73-203 (220)
320 TIGR00400 mgtE Mg2+ transporte 97.0 0.00028 6E-09 75.1 1.7 102 106-219 199-303 (449)
321 cd01572 QPRTase Quinolinate ph 97.0 0.006 1.3E-07 60.2 10.9 89 277-384 169-258 (268)
322 cd04801 CBS_pair_M50_like This 97.0 0.0045 9.8E-08 52.0 8.9 47 175-221 2-50 (114)
323 TIGR00393 kpsF KpsF/GutQ famil 97.0 0.0039 8.4E-08 61.5 9.7 56 164-221 155-212 (268)
324 TIGR00078 nadC nicotinate-nucl 97.0 0.0076 1.6E-07 59.4 11.5 90 276-384 164-254 (265)
325 PRK00748 1-(5-phosphoribosyl)- 97.0 0.0021 4.7E-08 62.0 7.6 78 300-387 33-110 (233)
326 PRK15094 magnesium/cobalt effl 97.0 0.0021 4.6E-08 64.3 7.5 60 162-221 65-126 (292)
327 cd04603 CBS_pair_KefB_assoc Th 96.9 0.005 1.1E-07 51.6 8.5 46 175-220 2-48 (111)
328 cd04583 CBS_pair_ABC_OpuCA_ass 96.9 0.01 2.2E-07 49.0 10.3 47 175-221 3-50 (109)
329 cd04619 CBS_pair_6 The CBS dom 96.9 0.0086 1.9E-07 50.4 9.9 47 175-221 2-49 (114)
330 cd00405 PRAI Phosphoribosylant 96.9 0.045 9.7E-07 51.7 15.8 118 249-384 62-185 (203)
331 cd04600 CBS_pair_HPP_assoc Thi 96.9 0.0047 1E-07 52.6 8.3 48 175-222 3-51 (124)
332 cd04608 CBS_pair_PALP_assoc Th 96.9 0.0023 4.9E-08 55.2 6.2 47 175-221 3-50 (124)
333 cd04617 CBS_pair_4 The CBS dom 96.9 0.0024 5.1E-08 54.3 6.3 48 175-222 2-50 (118)
334 cd04593 CBS_pair_EriC_assoc_ba 96.8 0.0076 1.7E-07 50.7 8.9 48 175-222 2-50 (115)
335 PRK01862 putative voltage-gate 96.8 0.0035 7.5E-08 69.0 8.5 57 163-221 446-503 (574)
336 cd04621 CBS_pair_8 The CBS dom 96.8 0.0021 4.6E-08 56.3 5.6 48 175-222 2-50 (135)
337 cd04726 KGPDC_HPS 3-Keto-L-gul 96.8 0.014 3.1E-07 54.9 11.6 128 238-382 4-135 (202)
338 cd04732 HisA HisA. Phosphorib 96.8 0.0035 7.6E-08 60.5 7.4 78 299-386 31-108 (234)
339 COG0214 SNZ1 Pyridoxine biosyn 96.8 0.0077 1.7E-07 56.6 9.1 67 250-317 30-106 (296)
340 cd04605 CBS_pair_MET2_assoc Th 96.8 0.0032 7E-08 52.4 6.1 47 175-221 3-50 (110)
341 cd04595 CBS_pair_DHH_polyA_Pol 96.8 0.012 2.7E-07 48.9 9.7 47 175-221 3-49 (110)
342 cd04597 CBS_pair_DRTGG_assoc2 96.8 0.0012 2.5E-08 56.2 3.4 49 104-157 60-111 (113)
343 PRK13585 1-(5-phosphoribosyl)- 96.8 0.0042 9E-08 60.4 7.5 76 300-385 35-110 (241)
344 cd04642 CBS_pair_29 The CBS do 96.8 0.0022 4.8E-08 55.1 5.1 47 175-221 2-49 (126)
345 TIGR01304 IMP_DH_rel_2 IMP deh 96.7 0.014 3.1E-07 60.0 11.7 114 250-381 102-217 (369)
346 cd04615 CBS_pair_2 The CBS dom 96.7 0.0052 1.1E-07 51.4 7.2 46 175-220 2-48 (113)
347 PRK13307 bifunctional formalde 96.7 0.07 1.5E-06 55.3 16.6 116 253-385 243-363 (391)
348 COG0269 SgbH 3-hexulose-6-phos 96.7 0.03 6.4E-07 52.6 12.5 128 237-381 6-138 (217)
349 cd04627 CBS_pair_14 The CBS do 96.7 0.002 4.3E-08 55.1 4.5 47 107-158 73-122 (123)
350 PRK08745 ribulose-phosphate 3- 96.7 0.07 1.5E-06 51.1 15.5 127 249-384 74-203 (223)
351 PRK08091 ribulose-phosphate 3- 96.7 0.07 1.5E-06 51.2 15.4 126 248-384 79-211 (228)
352 cd04623 CBS_pair_10 The CBS do 96.7 0.004 8.6E-08 51.9 6.2 48 175-222 2-50 (113)
353 cd04624 CBS_pair_11 The CBS do 96.7 0.0039 8.4E-08 52.1 6.1 48 175-222 2-50 (112)
354 COG0159 TrpA Tryptophan syntha 96.7 0.12 2.5E-06 50.5 16.8 162 178-385 71-238 (265)
355 COG0042 tRNA-dihydrouridine sy 96.7 0.046 1E-06 55.5 14.7 70 249-318 154-229 (323)
356 cd04611 CBS_pair_PAS_GGDEF_DUF 96.7 0.015 3.2E-07 48.2 9.5 48 175-222 2-49 (111)
357 cd04588 CBS_pair_CAP-ED_DUF294 96.7 0.022 4.9E-07 47.2 10.5 47 175-221 2-48 (110)
358 cd04632 CBS_pair_19 The CBS do 96.7 0.0042 9E-08 53.5 6.1 47 175-221 2-49 (128)
359 PRK08227 autoinducer 2 aldolas 96.7 0.026 5.5E-07 55.4 12.1 115 251-386 98-232 (264)
360 cd01568 QPRTase_NadC Quinolina 96.6 0.018 3.9E-07 57.0 11.1 89 278-384 169-259 (269)
361 TIGR01137 cysta_beta cystathio 96.6 0.0032 6.9E-08 67.2 6.3 57 163-221 334-391 (454)
362 cd04637 CBS_pair_24 The CBS do 96.6 0.0051 1.1E-07 52.3 6.5 47 175-221 2-48 (122)
363 cd04640 CBS_pair_27 The CBS do 96.6 0.0041 8.8E-08 53.5 5.9 45 175-219 2-47 (126)
364 cd04803 CBS_pair_15 The CBS do 96.6 0.0035 7.6E-08 53.2 5.4 48 175-222 2-50 (122)
365 COG2905 Predicted signal-trans 96.6 0.0069 1.5E-07 63.9 8.4 129 164-297 149-280 (610)
366 TIGR00259 thylakoid_BtpA membr 96.6 0.094 2E-06 51.2 15.7 173 188-383 33-230 (257)
367 PF00290 Trp_syntA: Tryptophan 96.6 0.12 2.7E-06 50.5 16.6 123 249-385 104-231 (259)
368 cd04586 CBS_pair_BON_assoc Thi 96.6 0.0035 7.6E-08 54.6 5.4 48 175-222 3-51 (135)
369 cd04596 CBS_pair_DRTGG_assoc T 96.6 0.0043 9.2E-08 51.6 5.6 47 174-220 2-49 (108)
370 cd04635 CBS_pair_22 The CBS do 96.6 0.0043 9.3E-08 52.7 5.6 46 175-220 2-48 (122)
371 PRK10550 tRNA-dihydrouridine s 96.6 0.074 1.6E-06 53.8 15.3 69 248-317 149-224 (312)
372 cd04639 CBS_pair_26 The CBS do 96.6 0.012 2.7E-07 48.9 8.2 47 175-221 2-49 (111)
373 cd04613 CBS_pair_SpoIVFB_EriC_ 96.6 0.0043 9.3E-08 51.8 5.4 47 175-221 2-49 (114)
374 PRK08649 inosine 5-monophospha 96.5 0.015 3.3E-07 59.9 10.3 95 276-381 120-216 (368)
375 PRK08072 nicotinate-nucleotide 96.5 0.024 5.3E-07 56.1 11.3 90 276-383 174-263 (277)
376 cd04609 CBS_pair_PALP_assoc2 T 96.5 0.0056 1.2E-07 50.7 5.9 47 175-221 2-48 (110)
377 PRK14024 phosphoribosyl isomer 96.5 0.0081 1.7E-07 58.5 7.7 76 300-387 35-111 (241)
378 COG0036 Rpe Pentose-5-phosphat 96.5 0.073 1.6E-06 50.3 13.6 126 248-383 72-200 (220)
379 cd04633 CBS_pair_20 The CBS do 96.5 0.0071 1.5E-07 51.2 6.4 47 175-221 2-48 (121)
380 cd04601 CBS_pair_IMPDH This cd 96.5 0.025 5.5E-07 46.7 9.7 46 175-220 3-49 (110)
381 TIGR00736 nifR3_rel_arch TIM-b 96.5 0.028 6.1E-07 54.1 11.1 71 248-318 149-221 (231)
382 cd04604 CBS_pair_KpsF_GutQ_ass 96.5 0.011 2.5E-07 49.2 7.5 48 175-222 3-51 (114)
383 cd04626 CBS_pair_13 The CBS do 96.5 0.0065 1.4E-07 50.7 5.9 47 175-221 2-49 (111)
384 cd04612 CBS_pair_SpoIVFB_EriC_ 96.4 0.0069 1.5E-07 50.3 6.0 47 175-221 2-48 (111)
385 cd04594 CBS_pair_EriC_assoc_ar 96.4 0.025 5.4E-07 46.7 9.3 46 176-221 3-48 (104)
386 PRK08005 epimerase; Validated 96.4 0.11 2.3E-06 49.3 14.5 125 249-384 70-195 (210)
387 PRK12290 thiE thiamine-phospha 96.4 0.038 8.3E-07 57.6 12.3 120 253-385 270-397 (437)
388 cd04585 CBS_pair_ACT_assoc2 Th 96.4 0.007 1.5E-07 51.1 6.0 47 175-221 2-48 (122)
389 cd04636 CBS_pair_23 The CBS do 96.4 0.005 1.1E-07 53.4 5.1 48 175-222 2-50 (132)
390 cd04602 CBS_pair_IMPDH_2 This 96.4 0.035 7.5E-07 46.6 10.2 46 175-220 3-52 (114)
391 cd04629 CBS_pair_16 The CBS do 96.4 0.0058 1.3E-07 51.1 5.3 47 175-221 2-49 (114)
392 PRK14057 epimerase; Provisiona 96.4 0.096 2.1E-06 51.0 14.2 124 249-383 87-224 (254)
393 cd04599 CBS_pair_GGDEF_assoc2 96.4 0.009 2E-07 49.1 6.3 46 175-220 2-47 (105)
394 cd04587 CBS_pair_CAP-ED_DUF294 96.4 0.0099 2.1E-07 49.6 6.6 46 175-220 2-47 (113)
395 COG0269 SgbH 3-hexulose-6-phos 96.4 0.22 4.8E-06 46.8 15.9 130 245-386 65-198 (217)
396 cd02205 CBS_pair The CBS domai 96.4 0.0081 1.8E-07 49.4 6.0 48 175-222 2-50 (113)
397 COG0517 FOG: CBS domain [Gener 96.3 0.011 2.4E-07 49.6 6.6 53 169-223 4-56 (117)
398 cd04589 CBS_pair_CAP-ED_DUF294 96.3 0.038 8.2E-07 45.9 9.9 47 175-221 2-48 (111)
399 PRK08999 hypothetical protein; 96.3 0.034 7.4E-07 56.2 11.3 81 295-383 231-311 (312)
400 TIGR00875 fsa_talC_mipB fructo 96.3 0.12 2.7E-06 49.1 14.4 125 246-384 63-189 (213)
401 PRK11573 hypothetical protein; 96.3 0.0066 1.4E-07 63.8 6.0 60 162-221 185-246 (413)
402 PRK03512 thiamine-phosphate py 96.3 0.074 1.6E-06 50.6 12.7 119 253-385 72-191 (211)
403 PLN02898 HMP-P kinase/thiamin- 96.3 0.038 8.3E-07 59.8 12.0 82 296-385 396-480 (502)
404 PF01729 QRPTase_C: Quinolinat 96.2 0.033 7.1E-07 51.0 9.6 90 276-383 66-158 (169)
405 COG1253 TlyC Hemolysins and re 96.2 0.024 5.2E-07 60.0 10.0 63 162-224 204-268 (429)
406 PRK09722 allulose-6-phosphate 96.2 0.19 4E-06 48.4 15.1 126 249-382 71-199 (229)
407 PRK01033 imidazole glycerol ph 96.2 0.016 3.5E-07 57.0 8.1 75 300-385 33-108 (258)
408 cd04800 CBS_pair_CAP-ED_DUF294 96.2 0.013 2.8E-07 48.7 6.4 47 175-221 2-48 (111)
409 cd04634 CBS_pair_21 The CBS do 96.2 0.0095 2E-07 52.6 5.8 48 175-222 2-49 (143)
410 PRK13587 1-(5-phosphoribosyl)- 96.2 0.016 3.6E-07 56.0 7.9 75 300-385 34-110 (234)
411 cd04631 CBS_pair_18 The CBS do 96.2 0.0099 2.1E-07 50.7 5.7 48 175-222 2-51 (125)
412 cd04607 CBS_pair_NTP_transfera 96.2 0.012 2.6E-07 49.2 6.2 47 175-221 3-50 (113)
413 PRK09016 quinolinate phosphori 96.2 0.054 1.2E-06 53.9 11.5 90 276-384 195-284 (296)
414 cd04584 CBS_pair_ACT_assoc Thi 96.2 0.0091 2E-07 50.5 5.4 47 175-221 2-49 (121)
415 cd04622 CBS_pair_9 The CBS dom 96.2 0.013 2.9E-07 48.8 6.2 45 175-219 2-46 (113)
416 cd04638 CBS_pair_25 The CBS do 96.2 0.056 1.2E-06 44.5 10.0 46 175-220 2-48 (106)
417 PRK01362 putative translaldola 96.2 0.16 3.5E-06 48.3 14.1 126 246-384 63-189 (214)
418 TIGR01334 modD putative molybd 96.1 0.21 4.5E-06 49.5 15.2 91 275-383 174-266 (277)
419 TIGR00343 pyridoxal 5'-phospha 96.1 0.082 1.8E-06 51.8 12.1 109 250-377 20-138 (287)
420 COG0800 Eda 2-keto-3-deoxy-6-p 96.1 0.034 7.4E-07 52.2 9.1 122 236-384 64-185 (211)
421 PTZ00170 D-ribulose-5-phosphat 96.1 0.084 1.8E-06 50.9 12.1 127 247-384 75-205 (228)
422 cd04802 CBS_pair_3 The CBS dom 96.1 0.017 3.6E-07 48.2 6.4 47 175-221 2-48 (112)
423 cd04630 CBS_pair_17 The CBS do 96.1 0.016 3.5E-07 48.6 6.3 47 175-221 2-50 (114)
424 TIGR03572 WbuZ glycosyl amidat 96.1 0.019 4E-07 55.5 7.5 76 300-386 33-109 (232)
425 cd04591 CBS_pair_EriC_assoc_eu 96.1 0.049 1.1E-06 45.2 9.1 47 175-221 3-53 (105)
426 cd04620 CBS_pair_7 The CBS dom 96.0 0.046 9.9E-07 45.8 9.0 47 175-221 2-49 (115)
427 TIGR01859 fruc_bis_ald_ fructo 96.0 0.11 2.5E-06 51.6 13.0 128 249-384 86-234 (282)
428 PF00478 IMPDH: IMP dehydrogen 96.0 0.083 1.8E-06 53.9 12.2 125 239-380 41-177 (352)
429 PRK07896 nicotinate-nucleotide 96.0 0.074 1.6E-06 52.9 11.5 92 275-384 185-278 (289)
430 KOG2335 tRNA-dihydrouridine sy 96.0 0.074 1.6E-06 53.6 11.5 101 247-349 155-265 (358)
431 PRK06559 nicotinate-nucleotide 96.0 0.091 2E-06 52.1 11.9 91 275-384 182-273 (290)
432 TIGR00007 phosphoribosylformim 96.0 0.021 4.4E-07 55.1 7.3 75 300-385 31-106 (230)
433 PF00977 His_biosynth: Histidi 95.9 0.022 4.7E-07 55.0 7.2 76 300-386 32-108 (229)
434 PRK05283 deoxyribose-phosphate 95.9 0.16 3.5E-06 49.5 13.0 124 249-384 85-226 (257)
435 cd04590 CBS_pair_CorC_HlyC_ass 95.9 0.019 4.2E-07 47.7 5.9 48 175-222 2-51 (111)
436 cd04625 CBS_pair_12 The CBS do 95.9 0.024 5.3E-07 47.2 6.5 47 175-221 2-48 (112)
437 PRK04128 1-(5-phosphoribosyl)- 95.9 0.029 6.3E-07 54.1 7.7 47 335-384 60-106 (228)
438 KOG1764 5'-AMP-activated prote 95.9 0.018 3.8E-07 59.8 6.6 108 115-224 165-288 (381)
439 PRK09250 fructose-bisphosphate 95.8 0.074 1.6E-06 53.8 10.4 133 251-383 150-321 (348)
440 PRK06106 nicotinate-nucleotide 95.8 0.11 2.3E-06 51.5 11.3 89 276-383 180-269 (281)
441 PRK13802 bifunctional indole-3 95.8 0.16 3.5E-06 56.5 13.9 124 248-388 71-195 (695)
442 PF00834 Ribul_P_3_epim: Ribul 95.7 0.04 8.7E-07 52.0 7.8 125 249-384 69-198 (201)
443 TIGR01305 GMP_reduct_1 guanosi 95.7 0.21 4.5E-06 50.4 13.0 126 239-380 49-178 (343)
444 PRK06096 molybdenum transport 95.7 0.13 2.9E-06 51.0 11.6 91 275-383 175-267 (284)
445 PRK06852 aldolase; Validated 95.7 0.11 2.5E-06 51.8 11.2 120 252-383 120-268 (304)
446 cd04598 CBS_pair_GGDEF_assoc T 95.6 0.023 5E-07 47.9 5.5 47 175-221 2-49 (119)
447 cd02812 PcrB_like PcrB_like pr 95.6 0.021 4.5E-07 54.4 5.6 67 303-384 141-208 (219)
448 PF03060 NMO: Nitronate monoox 95.6 0.12 2.6E-06 52.7 11.7 98 175-317 115-219 (330)
449 COG3010 NanE Putative N-acetyl 95.6 0.22 4.8E-06 46.3 11.9 109 189-317 91-209 (229)
450 PRK05096 guanosine 5'-monophos 95.6 0.22 4.8E-06 50.1 12.9 126 239-380 50-179 (346)
451 COG4109 Predicted transcriptio 95.6 0.039 8.5E-07 55.1 7.5 138 164-312 188-332 (432)
452 cd04606 CBS_pair_Mg_transporte 95.6 0.015 3.2E-07 48.4 4.1 42 179-220 2-49 (109)
453 cd04610 CBS_pair_ParBc_assoc T 95.6 0.033 7.1E-07 45.8 6.1 46 175-220 3-48 (107)
454 TIGR02129 hisA_euk phosphoribo 95.5 0.052 1.1E-06 52.8 8.0 69 300-385 41-109 (253)
455 PRK01130 N-acetylmannosamine-6 95.5 0.17 3.6E-06 48.5 11.6 111 248-380 24-146 (221)
456 smart00116 CBS Domain in cysta 95.5 0.018 3.8E-07 39.4 3.5 40 115-157 3-45 (49)
457 KOG0399 Glutamate synthase [Am 95.5 0.055 1.2E-06 61.5 8.9 167 275-472 1084-1268(2142)
458 cd04728 ThiG Thiazole synthase 95.4 0.11 2.4E-06 49.9 9.7 68 249-317 133-204 (248)
459 COG0274 DeoC Deoxyribose-phosp 95.4 0.36 7.7E-06 45.8 12.9 119 250-379 80-211 (228)
460 cd04723 HisA_HisF Phosphoribos 95.4 0.052 1.1E-06 52.5 7.7 74 300-385 38-112 (233)
461 CHL00200 trpA tryptophan synth 95.4 0.81 1.8E-05 45.0 16.0 68 249-317 156-231 (263)
462 cd02911 arch_FMN Archeal FMN-b 95.4 0.12 2.5E-06 50.1 10.0 69 247-318 152-221 (233)
463 cd04727 pdxS PdxS is a subunit 95.4 0.28 6E-06 48.2 12.4 110 249-377 17-136 (283)
464 PRK07315 fructose-bisphosphate 95.4 0.73 1.6E-05 46.1 15.9 129 249-384 88-236 (293)
465 PRK06543 nicotinate-nucleotide 95.3 0.22 4.7E-06 49.3 11.7 90 275-383 178-268 (281)
466 PRK06978 nicotinate-nucleotide 95.3 0.21 4.6E-06 49.6 11.6 89 276-383 192-280 (294)
467 PRK06806 fructose-bisphosphate 95.3 0.59 1.3E-05 46.5 14.8 129 249-385 86-235 (281)
468 PRK04180 pyridoxal biosynthesi 95.3 0.11 2.3E-06 51.1 9.3 85 275-378 61-146 (293)
469 TIGR03151 enACPred_II putative 95.3 0.25 5.5E-06 49.8 12.3 67 250-317 119-190 (307)
470 KOG1799 Dihydropyrimidine dehy 95.2 0.032 7E-07 55.4 5.5 166 248-473 219-421 (471)
471 PRK00208 thiG thiazole synthas 95.2 0.14 3E-06 49.3 9.7 68 249-317 133-204 (250)
472 PRK06801 hypothetical protein; 95.2 0.7 1.5E-05 46.0 14.9 128 249-384 86-237 (286)
473 PRK12653 fructose-6-phosphate 95.1 0.66 1.4E-05 44.4 14.1 125 246-384 65-191 (220)
474 PRK06843 inosine 5-monophospha 95.0 0.071 1.5E-06 55.5 7.6 69 299-380 154-222 (404)
475 TIGR01769 GGGP geranylgeranylg 95.0 0.28 6.1E-06 46.3 11.0 70 247-317 134-205 (205)
476 COG1830 FbaB DhnA-type fructos 94.9 0.29 6.3E-06 47.6 10.9 115 251-383 101-240 (265)
477 COG4175 ProV ABC-type proline/ 94.9 0.035 7.5E-07 55.2 4.7 87 121-222 293-383 (386)
478 PRK14114 1-(5-phosphoribosyl)- 94.9 0.12 2.5E-06 50.3 8.3 74 300-385 33-107 (241)
479 KOG1606 Stationary phase-induc 94.9 0.074 1.6E-06 49.3 6.4 33 351-383 207-241 (296)
480 PRK09517 multifunctional thiam 94.7 0.18 3.8E-06 57.4 10.5 120 253-386 72-200 (755)
481 PRK12655 fructose-6-phosphate 94.7 1.3 2.8E-05 42.3 14.8 125 246-384 65-191 (220)
482 PRK13813 orotidine 5'-phosphat 94.6 0.43 9.3E-06 45.4 11.4 114 251-385 71-197 (215)
483 COG4981 Enoyl reductase domain 94.5 1.5 3.2E-05 46.6 15.6 131 237-396 127-269 (717)
484 PRK07028 bifunctional hexulose 94.5 0.25 5.5E-06 52.3 10.5 132 235-383 4-141 (430)
485 cd04729 NanE N-acetylmannosami 94.4 0.6 1.3E-05 44.6 11.9 111 248-380 28-150 (219)
486 cd00381 IMPDH IMPDH: The catal 94.3 0.83 1.8E-05 46.5 13.4 115 249-380 47-163 (325)
487 TIGR03415 ABC_choXWV_ATP choli 94.3 0.081 1.7E-06 55.0 6.1 70 149-222 309-380 (382)
488 PRK08185 hypothetical protein; 94.3 2 4.3E-05 42.7 15.5 130 249-383 80-231 (283)
489 KOG3111 D-ribulose-5-phosphate 94.3 1.7 3.6E-05 40.2 13.5 121 248-384 75-201 (224)
490 TIGR01037 pyrD_sub1_fam dihydr 94.2 0.24 5.2E-06 49.8 9.1 80 237-317 158-263 (300)
491 PRK12376 putative translaldola 94.2 2 4.3E-05 41.5 14.8 126 247-383 71-202 (236)
492 cd02809 alpha_hydroxyacid_oxid 94.1 0.28 6.1E-06 49.3 9.3 212 15-317 26-256 (299)
493 COG0159 TrpA Tryptophan syntha 94.1 0.87 1.9E-05 44.5 12.2 67 249-317 159-233 (265)
494 PRK12656 fructose-6-phosphate 94.0 2 4.3E-05 41.1 14.4 125 246-384 66-193 (222)
495 PLN02591 tryptophan synthase 93.9 0.82 1.8E-05 44.6 11.8 68 249-317 143-218 (250)
496 TIGR01306 GMP_reduct_2 guanosi 93.9 0.95 2.1E-05 45.8 12.5 113 249-380 47-165 (321)
497 TIGR01919 hisA-trpF 1-(5-phosp 93.8 0.23 4.9E-06 48.4 7.9 73 301-385 35-108 (243)
498 PRK13586 1-(5-phosphoribosyl)- 93.8 0.26 5.6E-06 47.6 8.2 75 300-386 33-108 (232)
499 TIGR02317 prpB methylisocitrat 93.8 0.48 1E-05 47.1 10.2 90 289-380 12-108 (285)
500 cd04738 DHOD_2_like Dihydrooro 93.8 0.32 7E-06 49.5 9.2 70 248-317 217-309 (327)
No 1
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=100.00 E-value=1.3e-96 Score=777.31 Aligned_cols=497 Identities=75% Similarity=1.106 Sum_probs=472.3
Q ss_pred CCCCCccHHHhhccCCCCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEc
Q 010640 7 PIEDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVH 86 (505)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~ 86 (505)
++.||++++++|+...+||||||+|+|+|+++.|+++++.+++|+++.+++|+++++|+++++.+|+++|++.||+|+|+
T Consensus 5 ~~~~~~~~~~~~~~~~~ltfddv~l~p~~~~~~~~~~~~~t~lt~~~~~~~Pivsa~M~~vt~~~lA~Ama~aGGiGfI~ 84 (505)
T PLN02274 5 AFEDGFSAEKLFNQGVSYTYDDVIFHPGYIDFPADAVDLSTRLSRNIPLSIPCVSSPMDTVTESDMAIAMAALGGIGIVH 84 (505)
T ss_pred cccCCcCHHHHhcCCCCCCccceEecccccCcCCcccccccccccccCcCCCEeccCCcccchHHHHHHHHhCCCeEEEc
Confidence 67899999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhhhccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccc
Q 010640 87 SNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNK 163 (505)
Q Consensus 87 ~~~~~~~~~~~v~~v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~ 163 (505)
.+++++++..+++++++.+..|+.+| +++++++|+.+++++|.+ ++ +||+|+++.+++++|+||.+|+++....+
T Consensus 85 ~~as~E~q~~~Irkvk~~~~gmi~dp--vtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~~~~ 162 (505)
T PLN02274 85 YNNTAEEQAAIVRKAKSRRVGFVSDP--VVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVNDRE 162 (505)
T ss_pred CCCCHHHHHHHHHHhhcccccccCCC--eeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhccccC
Confidence 99999999999999998888899999 999999999999999988 76 99998622237999999999998655567
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEe
Q 010640 164 VKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAA 242 (505)
Q Consensus 164 ~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~ 242 (505)
.++.++|++..+++++++++++.+++++|.++++..+||+|+ ++++|+||++||++...++.+.++++|..++++++++
T Consensus 163 ~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaa 242 (505)
T PLN02274 163 TKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAA 242 (505)
T ss_pred CcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcCccccccCCCCCEEEEEE
Confidence 789999997334899999999999999999999999999998 9999999999999999999886667789999999999
Q ss_pred ecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcc
Q 010640 243 IGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGS 322 (505)
Q Consensus 243 i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~ 322 (505)
++...+..++++.|+++|+|+|++|.++|++..+++.++++|+.+|+++||+|+|.|.++|+.++++|+|+|.+++|+|+
T Consensus 243 vg~~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~ 322 (505)
T PLN02274 243 IGTRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGS 322 (505)
T ss_pred EcCCccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCc
Confidence 99888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEee
Q 010640 323 ICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVK 402 (505)
Q Consensus 323 ~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k 402 (505)
+|+++...+.|.|+++++..+.++++..++|||++|||+++.|++|||++||++||+|++|+.|.|||++..+++|++||
T Consensus 323 ~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~Esp~~~~~~~g~~~k 402 (505)
T PLN02274 323 ICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGEYFYQDGVRVK 402 (505)
T ss_pred cccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcccccCCcceeeeCCeEEE
Confidence 99999888889999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred eecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEE
Q 010640 403 KYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLE 482 (505)
Q Consensus 403 ~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~ 482 (505)
.||||||++||.+++.+|||++..+..++||+++++||+|++.++|.+|.++||++|+|+|++||+|||+++|+|.++|+
T Consensus 403 ~yrgmgs~~a~~~~~~~ry~~~~~~~~v~egv~~~v~~~g~~~~~~~~~~~g~~~~~~y~g~~~~~~~~~~~~~~~~~f~ 482 (505)
T PLN02274 403 KYRGMGSLEAMTKGSDQRYLGDTAKLKIAQGVSGAVADKGSVLKFVPYTMQAVKQGFQDLGASSLQSAHELLRSGTLRLE 482 (505)
T ss_pred EEeccchHHHHhccccccccccCcccccCCceEEecccCCCHHHHHHHHHHHHHHhhhhcCcchHHHHHhhcccCceEEE
Confidence 99999999999989999999876667899999999999999999999999999999999999999999999999999999
Q ss_pred EecccccccCccCcceeccccCC
Q 010640 483 VRTGAAQVEGGVHGLVSYEKKSF 505 (505)
Q Consensus 483 ~~~~~~~~e~~~~~~~~~~~~~~ 505 (505)
++|++|++||||||+++|+||+|
T Consensus 483 ~~t~~~~~e~~~h~~~~~~~~~~ 505 (505)
T PLN02274 483 VRTGAAQVEGGVHGLVSYEKKAF 505 (505)
T ss_pred EEchhhHhccCCCcceeccccCC
Confidence 99999999999999999999987
No 2
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-94 Score=762.36 Aligned_cols=488 Identities=50% Similarity=0.788 Sum_probs=466.2
Q ss_pred CCCccHHHhhccCC-CCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcC
Q 010640 9 EDGFSADRLFSQGY-SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHS 87 (505)
Q Consensus 9 ~~~~~~~~~~~~~~-~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~ 87 (505)
.|||+++.+|+... +||||||+|+|+|+++.|+++++.+++|+++.+++|+|+++|+++|+.+||++|++.||+|+||+
T Consensus 2 ~~~~~~~~~~~~~~~~lt~ddv~l~p~~~~~~~~~v~~~t~l~~~~~l~~Pii~a~M~~vt~~~ma~a~a~~GglGvi~~ 81 (495)
T PTZ00314 2 ADGMSADELFNSIPTGLTYDDVILLPGYIDFSRDDVDLSTRLTRNIRLKIPIVSSPMDTVTEHKMAIAMALMGGIGVIHN 81 (495)
T ss_pred CCccCHHHHhcCCCcCCCccceEecccccccccccccccccccCCcccCCceeecCccccccHHHHHHHHHCCCeEEecC
Confidence 58999999999995 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccccccc
Q 010640 88 NCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKV 164 (505)
Q Consensus 88 ~~~~~~~~~~v~~v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~ 164 (505)
+++++++.++++++++++++|+.+| +++++++|+.+++++|.+ ++ +||+|++..+++++|+||.+|+++....+.
T Consensus 82 ~~~~e~~~~~v~kvk~~e~g~i~dp--vtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~~~~ 159 (495)
T PTZ00314 82 NCSIEEQVEEVRKVKRFENGFIMDP--YVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKDKST 159 (495)
T ss_pred CCCHHHHHHHHhhccccccccccCC--eecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcccCCC
Confidence 9999999999999999999999999 999999999999999988 76 999986222389999999999987666677
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEee
Q 010640 165 KIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAI 243 (505)
Q Consensus 165 ~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i 243 (505)
++.++|++.++++++++++++.+++++|.+++++.+||+|+ ++++|+||++||++...++++ .+|..+++++++.+
T Consensus 160 ~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p~a---~~D~~GrL~Vgaav 236 (495)
T PTZ00314 160 PVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPNA---SLDSNGQLLVGAAI 236 (495)
T ss_pred CHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCchh---hhccCCCEEEEEEE
Confidence 89999987668999999999999999999999999999999 999999999999999999888 88999999999999
Q ss_pred cCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcce
Q 010640 244 GTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSI 323 (505)
Q Consensus 244 ~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~ 323 (505)
+...+..++++.++++|+++++++.++|++...++.++++++.+|+++|++|+|.|.++++.++++|+|+|++++|+|++
T Consensus 237 g~~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~ 316 (495)
T PTZ00314 237 STRPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSI 316 (495)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcc
Confidence 88777899999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred eecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeee
Q 010640 324 CTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKK 403 (505)
Q Consensus 324 ~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~ 403 (505)
|+++...+||.|+++++.++++++++.++|||++|||+++.|++||+++||++||+|++|+.|.|||++..+++|++||.
T Consensus 317 ~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~~e~~~~~~~~~g~~~k~ 396 (495)
T PTZ00314 317 CITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLGSLLAGTEEAPGEYFFKDGVRLKV 396 (495)
T ss_pred cccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEEEECchhccccccCCceeeeCCeEEEE
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred ecccCcHHHHh-ccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEE
Q 010640 404 YRGMGSLEAMT-KGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLE 482 (505)
Q Consensus 404 ~~g~~s~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~ 482 (505)
||||||++||. .++.+|||++.....++||+++.+||+|++.+++.+|.++||++|+|+|++||+|||+.+++|.++|+
T Consensus 397 yrGm~s~~a~~~~~~~~~y~~~~~~~~~~egv~~~v~~~g~~~~~~~~~~~gl~~~~~y~g~~~i~~~~~~~~~~~~~f~ 476 (495)
T PTZ00314 397 YRGMGSLEAMLSKESGERYLDENETIKVAQGVSGSVVDKGSVAKLIPYLVKGVKHGMQYIGAHSIPELHEKLYSGQVRFE 476 (495)
T ss_pred EeccchHHHhhcccccccccccccccccCCceEEeeecCCcHHHHHHHHHHHHHHHHHhhCCCcHHHHHhhcccCceEEE
Confidence 99999999998 68889999876677899999999999999999999999999999999999999999999999999999
Q ss_pred EecccccccCccCcceecc
Q 010640 483 VRTGAAQVEGGVHGLVSYE 501 (505)
Q Consensus 483 ~~~~~~~~e~~~~~~~~~~ 501 (505)
++|++|+.||||||+++|+
T Consensus 477 ~~t~~~~~e~~~h~~~~~~ 495 (495)
T PTZ00314 477 RRSGSAIKEGGVHSLHKFE 495 (495)
T ss_pred EEChhHHhccCCCccccCC
Confidence 9999999999999999985
No 3
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.3e-95 Score=709.04 Aligned_cols=492 Identities=51% Similarity=0.799 Sum_probs=480.0
Q ss_pred CCCCCCCCCCccHHHhhccCCCCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCC
Q 010640 2 DFSPLPIEDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGG 81 (505)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg 81 (505)
++.-|+++||++++++|+++..|||+|++++||+.++.+++|++.++||+++.+++|+++||||++++.+||++|+..||
T Consensus 8 ~~~~~~~~dGls~~~L~~~~~~LtynDfliLPg~idF~s~eVsL~t~ltr~itl~tPlvsSpMDTVtes~MAiaMAl~gg 87 (503)
T KOG2550|consen 8 DLTKSLPRDGLSVQELFDSKIGLTYNDFLILPGFIDFASDEVSLQTKLTRNITLNTPLVSSPMDTVTESEMAIAMALLGG 87 (503)
T ss_pred cccccCCcCCCCHHHHhhcccCccccceeecccccccccccceeehhhhhcccccCceeccCCcccchhHHHHHHHhcCC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEcCCCCHHHHHHHHHhhhccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccc
Q 010640 82 IGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWEN 158 (505)
Q Consensus 82 ~g~i~~~~~~~~~~~~v~~v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~ 158 (505)
+|+||.+++|+.|+.+++++++++..+..+| ++++|+.|+.++++.... ++ +|++++++...||+|+||.+|+.|
T Consensus 88 Ig~IHhNctpe~QA~~v~~vK~~~~g~~~~p--~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f 165 (503)
T KOG2550|consen 88 IGFIHHNCTPEDQADMVRRVKNYENGFINNP--IVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQF 165 (503)
T ss_pred ceeeecCCCHHHHHHHHHHHHHhhcccccCC--cccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhh
Confidence 9999999999999999999999999999999 999999999999999888 88 999998888899999999999999
Q ss_pred ccccccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcc
Q 010640 159 LSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKW 237 (505)
Q Consensus 159 ~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l 237 (505)
..+....+.++|++ +.++.+.+.++.++.++|++++...|||||+ |.++.+|+++|+.++..||.+ +++..+++
T Consensus 166 ~~~~~~~~~~vmt~--~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~~yPla---sk~~~kql 240 (503)
T KOG2550|consen 166 LEDNSLLVSDVMTK--NPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNRDYPLA---SKDSTKQL 240 (503)
T ss_pred hhcccchhhhhccc--ccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhcCCCcc---ccCcccce
Confidence 87788999999999 7799999999999999999999999999999 999999999999999999999 78899999
Q ss_pred eEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEc
Q 010640 238 MVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 238 ~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
.+++++++.++..++++.+.++|+|++++|+++|++...+++++++|+.+|.+.||+|||.|.+.|+.|+.+|+|++.|+
T Consensus 241 l~gAaiGTre~dK~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVG 320 (503)
T KOG2550|consen 241 LCGAAIGTRDDDKERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVG 320 (503)
T ss_pred eeeeccccccchhHHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeec
Q 010640 318 MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQN 397 (505)
Q Consensus 318 ~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~ 397 (505)
.|.|++|++++..+.|.|+.+++..|++++...++|||+||||.+..+++|||.+||++||||+.|+++.|||+++.+++
T Consensus 321 MGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAgtTEapGeyf~~~ 400 (503)
T KOG2550|consen 321 MGSGSICITQKVMACGRPQGTAVYKVAEFANQFGVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAGTTEAPGEYFFRD 400 (503)
T ss_pred cccCceeeeceeeeccCCcccchhhHHHHHHhcCCceeecCCcCccchhHhhhhcCchhheecceeeeeeccCcceeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcC
Q 010640 398 GRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSR 477 (505)
Q Consensus 398 ~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~ 477 (505)
|+++|+||||||++||+.++..|||++..+.++++|+.+.++++|++..+|.++..++|++|.+.|++++.+||++++++
T Consensus 401 g~rlKkyrGMGSl~AM~~~s~~rY~~e~dkvkiAQGVsg~v~dKGsv~kfipyl~~giqh~cqdiGa~sL~~l~~~~~~~ 480 (503)
T KOG2550|consen 401 GVRLKKYRGMGSLDAMESSSQKRYFSEVDKVKIAQGVSGSVQDKGSVQKFIPYLLAGIQHSCQDIGARSLKELREMMYSG 480 (503)
T ss_pred CeeehhccCcchHHHHhhhhhhccccccceEeeccCcEEEeccCcchhhhHHHHHHHHhhhhhhhhHHHHHHHHHHhhcc
Confidence 99999999999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEecccccccCccCcceec
Q 010640 478 TLRLEVRTGAAQVEGGVHGLVSY 500 (505)
Q Consensus 478 ~~~~~~~~~~~~~e~~~~~~~~~ 500 (505)
.++|+.+|.+++.|+++|.+++|
T Consensus 481 ~vrfe~rt~~Aq~Eggvh~l~Sy 503 (503)
T KOG2550|consen 481 EVRFEKRTMSAQIEGGVHGLHSY 503 (503)
T ss_pred eEEEEeccccceeccCccCCCCC
Confidence 99999999999999999999986
No 4
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=100.00 E-value=8.4e-88 Score=704.46 Aligned_cols=453 Identities=29% Similarity=0.418 Sum_probs=426.1
Q ss_pred CCcccceeecCCCCCCCCC-CeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhh
Q 010640 23 SYTYDDVIFLPHYIDFPID-AVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSA 101 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~-~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v 101 (505)
+||||||+|+|+|+++.|+ ++++.+++| .++++|+++|+||++|+.+||++|++.||+|+||+|++++.|.+.++++
T Consensus 11 ~ltfddvll~p~~~~~~~~~~v~~~t~~~--~~l~~P~vsa~mdtvTe~~MAi~~A~~GGigvIh~n~~i~~qae~v~~V 88 (475)
T TIGR01303 11 DLTYNDVFMVPSRSEVGSRFDVDLSTADG--TGTTIPLVVANMTAVAGRRMAETVARRGGIVILPQDLPIPAVKQTVAFV 88 (475)
T ss_pred CCCccceEEccCccCccCCCceeeccccc--CccccceeeccchhhHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHhhc
Confidence 8999999999999999995 999999988 4779999999999999999999999999999999999999999999988
Q ss_pred hccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceE
Q 010640 102 KSRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVS 178 (505)
Q Consensus 102 ~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~ 178 (505)
+.. +.|..+| +++++++++.+++++|.+ ++ +||+| +++++|+||.+|++... ...++.++|++ ++++
T Consensus 89 Kv~-eim~~~p--vtv~p~~tI~eA~~lm~~~~~~~~vVvD----~gklvGIVT~rDL~~~~-~~~~V~dIMt~--~lit 158 (475)
T TIGR01303 89 KSR-DLVLDTP--ITLAPHDTVSDAMALIHKRAHGAAVVIL----EDRPVGLVTDSDLLGVD-RFTQVRDIMST--DLVT 158 (475)
T ss_pred chh-hccccCC--eEECCCCCHHHHHHHHHhcCCeEEEEEE----CCEEEEEEEHHHhhcCC-CCCCHHHHccC--CceE
Confidence 776 5688899 999999999999999988 66 66766 57999999999997543 34679999998 9999
Q ss_pred ecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHH
Q 010640 179 VPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLV 257 (505)
Q Consensus 179 v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li 257 (505)
+++++++.+++++|.+++++++||+|+ |+++|+||++||++...++ + ..+..+++.+++..+...+..++++.|+
T Consensus 159 v~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~-~---~~d~~grl~Vgaav~~~~~~~~ra~~Lv 234 (475)
T TIGR01303 159 APADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT-P---ATDAAGRLRIGAAVGINGDVGGKAKALL 234 (475)
T ss_pred eCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC-c---hhhhccCceehheeeeCccHHHHHHHHH
Confidence 999999999999999999999999998 9999999999999998887 3 5667779999999988888999999999
Q ss_pred HcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChH
Q 010640 258 KAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQA 337 (505)
Q Consensus 258 eaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~ 337 (505)
++|++++++|.++|++..+++.++++|+.+|++|||+|++.|.+.++.|.++|+|+|.|++|+|++|+++...+||.|++
T Consensus 235 ~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~ 314 (475)
T TIGR01303 235 DAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQF 314 (475)
T ss_pred HhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCcccee-ecCeEeeeecccCcHHHHh-c
Q 010640 338 TAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVY-QNGRRVKKYRGMGSLEAMT-K 415 (505)
Q Consensus 338 ~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~-~~~~~~k~~~g~~s~~~~~-~ 415 (505)
+++.++++++++.++|||++|||+++.|++|||++||++||+|+.|+.|.|||++..+ .+|++||.||||||++||. .
T Consensus 315 ~a~~~~~~~~~~~~~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~espg~~~~~~~g~~~k~yrGmgs~~a~~~~ 394 (475)
T TIGR01303 315 SAVLECAAEARKLGGHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGDLMRDRDGRPYKESFGMASKRAVVAR 394 (475)
T ss_pred HHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCCEEeechhhcccccCCCceEEeECCEEEEEEecccCHHHHhhc
Confidence 9999999998888999999999999999999999999999999999999999999998 9999999999999999997 5
Q ss_pred cccccccccccccccccceeeee----ccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEeccccccc
Q 010640 416 GSDQRYLGDKAKLKIAQGVVGAV----ADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVE 491 (505)
Q Consensus 416 ~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~~~~e 491 (505)
++.+|||++..+..++||+++++ ||+|++.++|.+|.++||++|+|+|++||+|||++ ++|+++|++|+.|
T Consensus 395 ~~~~ry~~~~~~~~v~eGv~~~~~~~~~~~g~~~~~i~~~~~gl~s~~~y~g~~~i~~~~~~-----~~~~~~t~~g~~e 469 (475)
T TIGR01303 395 TGADNAFDRARKALFEEGISTSRMGLDPDRGGVEDLIDHIISGVRSSCTYAGASSLEEFHER-----AVVGVQSGAGYAE 469 (475)
T ss_pred cccchhhhhhccccccCceecccccccCCCCCHHHHHHHHHHHHHHHhhhcCCCcHHHHHhC-----CEEEEEccccccc
Confidence 78899998766678999999855 67999999999999999999999999999999999 6999999999999
Q ss_pred CccCc
Q 010640 492 GGVHG 496 (505)
Q Consensus 492 ~~~~~ 496 (505)
||||.
T Consensus 470 ~~~~~ 474 (475)
T TIGR01303 470 GKPLP 474 (475)
T ss_pred CCCCC
Confidence 99996
No 5
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=100.00 E-value=1.6e-87 Score=706.83 Aligned_cols=466 Identities=31% Similarity=0.472 Sum_probs=432.7
Q ss_pred CCcccceeecCCCCC--CCCCCeeeeeeecC-------cccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHH
Q 010640 23 SYTYDDVIFLPHYID--FPIDAVSLSTRLTR-------NIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAAD 93 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~--~~~~~~~~~~~lt~-------~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~ 93 (505)
+||||||+|+|+|++ +.|+++++.+++|+ +..+++|+++|+|+++++..||++|++.||+|+||.++++++
T Consensus 9 ~~tfddvll~P~~~~~~~~~~~v~~~t~~~~~~~~~~~~i~l~iP~~SatmdtvtgdalAiala~~gG~g~Ih~n~sie~ 88 (502)
T PRK07107 9 SRTFSEYLLVPGLSSKECVPANVSLKTPLVKFKKGEESAITLNIPLVSAIMQSVSDDNMAIALAREGGLSFIFGSQSIES 88 (502)
T ss_pred CccccceEEccCCCCCCcCccceeccccccccccCcccccccCCChHHHHHHHHhhHHHHHHHHHcCCCeEeeCCCCHHH
Confidence 899999999999996 68899999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc-ccccccccc
Q 010640 94 QARLVVSAKSRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS-DNKVKIFDY 169 (505)
Q Consensus 94 ~~~~v~~v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~-~~~~~v~~i 169 (505)
+++++++++++...+..+| +++++++|+.+++++|.+ ++ +||+|++..+++++|+||.+|+++.. ..+.++.++
T Consensus 89 qa~lV~kVk~~~~g~i~~~--~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~~~~~V~dI 166 (502)
T PRK07107 89 EAAMVRRVKNYKAGFVVSD--SNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSLDTKVKDF 166 (502)
T ss_pred HHHHHHHHHHHhcCCcCCC--CEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccCCCCCHHHH
Confidence 9999999998887776788 899999999999999988 66 99998522248999999999997543 346789999
Q ss_pred cccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCcc
Q 010640 170 MRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRES 248 (505)
Q Consensus 170 m~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~ 248 (505)
|++..+++++++++++.+++++|.++++..|||||+ |+++|+||++|+++...+|.+ .+|..++++|++.++.. +
T Consensus 167 Mt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~~~P~a---~~d~~grL~V~~av~~~-~ 242 (502)
T PRK07107 167 MTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKENPLE---LLDSSKRYVVGAGINTR-D 242 (502)
T ss_pred hCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcccChhh---hhhhccCeeeeeccChh-h
Confidence 996557899999999999999999999999999998 999999999999999988887 78889999999998654 5
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCC-CceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYP-ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQ 327 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~-~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~ 327 (505)
..++++.|+++|+|+++++.++|++...++.++++++.+| +++|++|||.|.+.++.|+++|+|+|.|++|+|++|++|
T Consensus 243 ~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr 322 (502)
T PRK07107 243 YAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITR 322 (502)
T ss_pred HHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccc
Confidence 7899999999999999999999999999999999999997 489999999999999999999999999999999999999
Q ss_pred cccccCcChHHHHHHHHHHHhhc----C--CcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEe
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQS----G--VPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRV 401 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~----~--ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~ 401 (505)
...|.|.|+++++.+|+++++++ + +|||+||||+++.|++|||++|||+||+|++|+.|.|||+++.+++|++|
T Consensus 323 ~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~espg~~~~~~g~~~ 402 (502)
T PRK07107 323 EQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTNKVNINGNYM 402 (502)
T ss_pred cccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhccccCCCcEEEECCEEE
Confidence 99999999999999999987542 4 99999999999999999999999999999999999999999999999999
Q ss_pred eeecccCcHHHHhccccccccc-cccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCcee
Q 010640 402 KKYRGMGSLEAMTKGSDQRYLG-DKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLR 480 (505)
Q Consensus 402 k~~~g~~s~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~ 480 (505)
|.||||||+.||. .+|||. +.++..++||+++.+||+|++.+++.+|.++||++|+|+|++||+|||++ ++
T Consensus 403 k~yrgm~s~~a~~---~~ry~~~~~~~~~~~egv~~~v~~~g~~~~~~~~~~~glrs~~~y~g~~~i~~l~~~-----~~ 474 (502)
T PRK07107 403 KEYWGEGSNRARN---WQRYDLGGDKKLSFEEGVDSYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQQK-----AK 474 (502)
T ss_pred EEeecccCHhhhh---ccccccccccccccCCccEEEecCCCCHHHHHHHHHHHHHHhhhccCCCcHHHHHhC-----Ce
Confidence 9999999999984 589984 44457899999999999999999999999999999999999999999999 59
Q ss_pred EEEecccccccCccCcceeccc
Q 010640 481 LEVRTGAAQVEGGVHGLVSYEK 502 (505)
Q Consensus 481 ~~~~~~~~~~e~~~~~~~~~~~ 502 (505)
|+++|++|+.||||||++++++
T Consensus 475 f~~~t~~~~~e~~~h~~~~~~~ 496 (502)
T PRK07107 475 ITLVSSTSIVEGGAHDVILKDK 496 (502)
T ss_pred EEEECcchhhccCCCcceeecC
Confidence 9999999999999999999664
No 6
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=100.00 E-value=3.9e-85 Score=684.99 Aligned_cols=455 Identities=29% Similarity=0.429 Sum_probs=428.3
Q ss_pred CCcccceeecCCCCCCCCC-CeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhh
Q 010640 23 SYTYDDVIFLPHYIDFPID-AVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSA 101 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~-~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v 101 (505)
+||||||+|+|+|+++.|+ ++++.+.+ ++.+++|+++|+||++|+.+|+++|++.||+|++|.+++++.+.+.++.+
T Consensus 12 ~ltfddvll~p~~~~~~~~~~v~~~t~~--~~~l~~Pi~sa~Mdtvt~~~MAiaLAr~GGiGvih~nl~~~~q~~~l~~V 89 (479)
T PRK07807 12 DLTYDDVFLVPSRSDVGSRFDVDLSTAD--GTGTTIPLVVANMTAVAGRRMAETVARRGGLVVLPQDIPIDVVAEVVAWV 89 (479)
T ss_pred CcCccceEecccccCccCCCceecccCC--CCccccceeecCCcchhHHHHHHHHHHCCCceEeeCCCCHHHHHHHHhhc
Confidence 8999999999999999995 99999975 67899999999999999999999999999999999999999999999988
Q ss_pred hccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceE
Q 010640 102 KSRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVS 178 (505)
Q Consensus 102 ~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~ 178 (505)
+. .++|..+| +++++++++.++.++|.+ ++ +||+|+ +++++|+||.+|++... ...++.++|++ ++++
T Consensus 90 Kv-~~iMi~~p--vtv~~d~tv~eA~~~m~~~~~s~l~VVD~---~gklvGIVT~rDL~~~~-~~~~V~diMt~--~~it 160 (479)
T PRK07807 90 KS-RDLVFDTP--VTLSPDDTVGDALALLPKRAHGAVVVVDE---EGRPVGVVTEADCAGVD-RFTQVRDVMST--DLVT 160 (479)
T ss_pred cc-ccccccCC--eEECCCCCHHHHHHHHHhcCCceEEEECC---CCeEEEEEeHHHHhcCc-cCCCHHHhccC--CceE
Confidence 77 46899999 999999999999999988 66 999997 89999999999997543 34679999998 9999
Q ss_pred ecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHH
Q 010640 179 VPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLV 257 (505)
Q Consensus 179 v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li 257 (505)
+++++++.+++++|.+++++++||+|+ |+++|+||++||++...++ + ..+..+++.+++.++..++..++++.+.
T Consensus 161 V~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~-~---~~~~~g~l~V~aav~~~~~~~~~a~~Lv 236 (479)
T PRK07807 161 LPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT-P---AVDAAGRLRVAAAVGINGDVAAKARALL 236 (479)
T ss_pred ECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC-c---hhhhhhccchHhhhccChhHHHHHHHHH
Confidence 999999999999999999999999998 9999999999999998887 3 4566778889988888778899999999
Q ss_pred HcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChH
Q 010640 258 KAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQA 337 (505)
Q Consensus 258 eaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~ 337 (505)
++|++++++|.++|++..+++.++++|+.+|+++||+|+|.|.+.++.|+++|+|+|.|++|+|++|+++..+|.|.|++
T Consensus 237 ~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~ 316 (479)
T PRK07807 237 EAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQF 316 (479)
T ss_pred HhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCcccee-ecCeEeeeecccCcHHHHhc-
Q 010640 338 TAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVY-QNGRRVKKYRGMGSLEAMTK- 415 (505)
Q Consensus 338 ~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~-~~~~~~k~~~g~~s~~~~~~- 415 (505)
+++.++++++++.++|||++|||.++.|++|||++||++||+|++|+.|.|||++..+ .||++||.||||||++||..
T Consensus 317 ~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Espg~~~~~~~g~~~k~yrgmgs~~a~~~~ 396 (479)
T PRK07807 317 SAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMASARAVAAR 396 (479)
T ss_pred HHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccCccCCCceEeccCCeEEEEeeccccHHHHhcc
Confidence 9999999999888999999999999999999999999999999999999999999998 99999999999999999974
Q ss_pred cccccccccccccccccceeeee----ccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEeccccccc
Q 010640 416 GSDQRYLGDKAKLKIAQGVVGAV----ADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVE 491 (505)
Q Consensus 416 ~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~~~~e 491 (505)
++.+|||++..+.+++||+++++ |++|++++++++|.++||++|+|+|++||+|||++ ++|+++|+||++|
T Consensus 397 ~~~~~~~~~~~~~~~~eGv~~~~~~~~~~~g~~~~~~~~l~~glr~~~~y~g~~~i~~~~~~-----~~~~~~t~~g~~e 471 (479)
T PRK07807 397 TAGDSAFDRARKALFEEGISTSRMYLDPGRPGVEDLLDHITSGVRSSCTYAGARTLAEFHER-----AVVGVQSAAGYAE 471 (479)
T ss_pred cCccchhhhcccCCCCCCccceeeeccCCCCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHhC-----CEEEEECcccccc
Confidence 46689998766788999999986 67999999999999999999999999999999999 6999999999999
Q ss_pred CccCcc
Q 010640 492 GGVHGL 497 (505)
Q Consensus 492 ~~~~~~ 497 (505)
||||.+
T Consensus 472 ~~~h~~ 477 (479)
T PRK07807 472 GRPLPT 477 (479)
T ss_pred CCCCCC
Confidence 999986
No 7
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=100.00 E-value=2.2e-84 Score=688.30 Aligned_cols=463 Identities=37% Similarity=0.581 Sum_probs=439.0
Q ss_pred CCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhhh
Q 010640 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAK 102 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v~ 102 (505)
+||||||+|+|+|+++.|+++++.+++|+++.+++|+++|+|+++|+.+|++++++.||+|+||.+++++++.+++++++
T Consensus 8 ~~t~ddv~l~p~~~~~~~~~~~~~t~l~~~~~~~~Piv~a~m~~vT~~ela~ava~~GglG~i~~~~~~e~~~~~I~~vk 87 (486)
T PRK05567 8 ALTFDDVLLVPAHSEVLPNDVDLSTQLTKNIRLNIPLLSAAMDTVTEARMAIAMAREGGIGVIHKNMSIEEQAEEVRKVK 87 (486)
T ss_pred CcCccceEecccccCcCcccccccchhhhhcCcCcCEEeCCCCCcCHHHHHHHHHhCCCCCEecCCCCHHHHHHHHHHhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccc-cCCCceE
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMR-DCSSNVS 178 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~-~~~~~~~ 178 (505)
+..++|..++ ++++++.++.+++++|.+ ++ +||+|+ +++++|+||.+|+++......++.++|+ + ++++
T Consensus 88 ~~~dim~~~~--v~i~~~~tv~ea~~~m~~~~~~~lpVvd~---~g~lvGiVt~~DL~~~~~~~~~V~dim~~~--~~v~ 160 (486)
T PRK05567 88 RSESGVVTDP--VTVTPDTTLAEALALMARYGISGVPVVDE---NGKLVGIITNRDVRFETDLSQPVSEVMTKE--RLVT 160 (486)
T ss_pred hhhhcccCCC--eEeCCCCCHHHHHHHHHHhCCCEEEEEcc---CCEEEEEEEHHHhhhcccCCCcHHHHcCCC--CCEE
Confidence 9999999999 999999999999999988 76 999997 8999999999999755455678999998 5 8999
Q ss_pred ecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHH
Q 010640 179 VPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLV 257 (505)
Q Consensus 179 v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li 257 (505)
+++++++.++++.|.+++++.+||+|+ |+++|+||++||++...++.. .++..+++.+++.++..+...+.++.++
T Consensus 161 v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a---~~d~~g~l~V~aai~~~~~~~e~a~~L~ 237 (486)
T PRK05567 161 VPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNA---CKDEQGRLRVGAAVGVGADNEERAEALV 237 (486)
T ss_pred ECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCc---ccccCCCEEEEeecccCcchHHHHHHHH
Confidence 999999999999999999999999999 999999999999999887665 5677889999999987667889999999
Q ss_pred HcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChH
Q 010640 258 KAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQA 337 (505)
Q Consensus 258 eaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~ 337 (505)
++|+++++++.++|+...+++.++++++.+|++||++|++.|.++++.|.++|+|+|.++.|+|+.|+++.+.+||.|++
T Consensus 238 ~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~ 317 (486)
T PRK05567 238 EAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQI 317 (486)
T ss_pred HhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHH
Confidence 99999999999999999999999999999989999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccc
Q 010640 338 TAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGS 417 (505)
Q Consensus 338 ~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~ 417 (505)
+++.+++++++..++|||++|||+++.|++|||++||++||+|++|+.+.|||++..+++|++||.||||||++||..++
T Consensus 318 ~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G~~~a~~~e~pg~~~~~~g~~~k~y~gm~s~~a~~~~~ 397 (486)
T PRK05567 318 TAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSKGS 397 (486)
T ss_pred HHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEECccccccccCCCceEEECCEEEEEEeccchHHHHhccc
Confidence 99999999887778999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred ccccccc--ccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEecccccccCccC
Q 010640 418 DQRYLGD--KAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVH 495 (505)
Q Consensus 418 ~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~ 495 (505)
.+|||++ .....++||+++.+||+|++.+++.+|.++||++|+|+|++||+|||++ ++|+++|++|++|||||
T Consensus 398 ~~r~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~-----~~~~~~t~~~~~e~~~h 472 (486)
T PRK05567 398 SDRYFQSVNAADKLVPEGIEGRVPYKGPLSEIIHQLMGGLRSGMGYTGAATIEELREK-----AEFVRITGAGLRESHVH 472 (486)
T ss_pred ccccccccccccccCCCceEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhc-----CeEEEEChhhHhhcCCc
Confidence 9999984 3456799999999999999999999999999999999999999999998 69999999999999999
Q ss_pred cceec
Q 010640 496 GLVSY 500 (505)
Q Consensus 496 ~~~~~ 500 (505)
|+...
T Consensus 473 ~~~~~ 477 (486)
T PRK05567 473 DVQIT 477 (486)
T ss_pred cceec
Confidence 99764
No 8
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=100.00 E-value=2.6e-83 Score=673.39 Aligned_cols=440 Identities=48% Similarity=0.740 Sum_probs=419.8
Q ss_pred CCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhhh
Q 010640 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAK 102 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v~ 102 (505)
+||||||+|+|+|+++.|+++++.+++|+++.+++|+++|+|+++|+.+|+++|++.|++|+||+|+++++|.+++++++
T Consensus 1 ~~t~ddv~l~p~~~~~~~~~~~~~~~~~~~~~l~~p~~s~~mdtvTe~ema~~ma~~gg~GvI~~n~~~e~q~~~V~~Vk 80 (450)
T TIGR01302 1 GLTFDDVLLLPGFIDVEPDDVDLSTRITRNIKLNIPILSSPMDTVTESRMAIAMAREGGIGVIHRNMSIEEQAEQVKRVK 80 (450)
T ss_pred CCCccceEecccccccCccccccccccccccCcCCCeeecCCCccCHHHHHHHHHhcCCCceeecCCCHHHHHHHHhhhc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCC---CeEEEEEeccccccccccccccccccc-cCCC
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRR---SRILGYVTKSDWENLSDNKVKIFDYMR-DCSS 175 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~---g~lvGivt~~Dl~~~~~~~~~v~~im~-~~~~ 175 (505)
++.+.|..+| +++++++|+.+++++|.+ ++ +||+|+ + ++++|+||.+|+++......++.++|+ + +
T Consensus 81 ~~~~~~~~~~--vtl~~~~tv~eal~~m~~~~~s~lpVvd~---~~~~~~lvGIVt~rDL~~~~~~~~~V~dvm~~~--~ 153 (450)
T TIGR01302 81 RAENGIISDP--VTISPETTVADVLELMERKGISGIPVVED---GDMTGKLVGIITKRDIRFVKDKGKPVSEVMTRE--E 153 (450)
T ss_pred cccCceecCc--eEeCCCCCHHHHHHHHHHcCCCEEEEEeC---CCCCCeEEEEEEHHHHhhhhcCCCCHHHhhCCC--C
Confidence 9999999999 999999999999999998 77 999997 5 799999999999765445678999998 5 8
Q ss_pred ceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHH
Q 010640 176 NVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLE 254 (505)
Q Consensus 176 ~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~ 254 (505)
++++++++++.++++.|.+++.+.+||+|+ |+++|+||++||++...++.. .++.+++++++++++..++..++++
T Consensus 154 ~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~~~~~---~~d~~g~l~V~aav~~~~~~~~r~~ 230 (450)
T TIGR01302 154 VITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRKFPHA---SKDENGRLIVGAAVGTREFDKERAE 230 (450)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcccCCcc---eEeCCCCEEEEEEecCchhHHHHHH
Confidence 999999999999999999999999999999 999999999999999888766 6788899999999988778899999
Q ss_pred HHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCc
Q 010640 255 HLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGR 334 (505)
Q Consensus 255 ~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~ 334 (505)
.++++|+++|+++.++|++..+++.++++++.||+++|++|++.|.+.++.+.++|+|+|.|++|+|++|+++...+||.
T Consensus 231 ~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~ 310 (450)
T TIGR01302 231 ALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGV 310 (450)
T ss_pred HHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHh
Q 010640 335 GQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMT 414 (505)
Q Consensus 335 p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~ 414 (505)
|+++++.++++++++.++|||++|||+++.|++|||++||++||+|++|+.|+|||+++.+.+|++||.||||||++||.
T Consensus 311 p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~pg~~~~~~g~~~k~yrgm~s~~a~~ 390 (450)
T TIGR01302 311 PQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTESPGEYEIINGRRYKQYRGMGSLGAMT 390 (450)
T ss_pred cHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCcCCCceEEECCEEEEEEeccchHHHHh
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccc--cccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHH
Q 010640 415 KGSDQRYLGDK--AKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHD 472 (505)
Q Consensus 415 ~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~ 472 (505)
.++.+|||++. ....++||+++++||+|++.+++.+|.++||++|+|+|++||+|||+
T Consensus 391 ~~~~~ry~~~~~~~~~~~~egv~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~ 450 (450)
T TIGR01302 391 KGSSDRYLQDENKTKKFVPEGVEGAVPYKGSVLELLPQLVGGLKSGMGYVGARSIDELRE 450 (450)
T ss_pred ccccccccccccccccccCCceEEcccccCcHHHHHHHHHHHHHHhhhccCcCcHHHHhC
Confidence 89999999863 45679999999999999999999999999999999999999999984
No 9
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=100.00 E-value=1.7e-73 Score=578.61 Aligned_cols=392 Identities=35% Similarity=0.549 Sum_probs=355.7
Q ss_pred CCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhhh
Q 010640 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAK 102 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v~ 102 (505)
+||||||+|+|+++++.|+++++.|+||+.+.+.+|+|+|+|+++++++|++++++.||+|+||.+++++++.+++++++
T Consensus 9 ~ltfdDvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~Vt~~~lA~AvA~aGGlGvI~~~~~~e~l~~eI~~vk 88 (404)
T PRK06843 9 ALTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNMSIEAQRKEIEKVK 88 (404)
T ss_pred ccCccceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCCCCHHHHHHHHHCCCEEEecCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCC
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPAN 182 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~ 182 (505)
+.++ . + +|++.+|++ .++.++|+. ++.
T Consensus 89 ~~~~-----~-------------------------------~----~i~~~~d~~------~~~~~~~t~-------~~~ 115 (404)
T PRK06843 89 TYKF-----Q-------------------------------K----TINTNGDTN------EQKPEIFTA-------KQH 115 (404)
T ss_pred hhcC-----C-------------------------------C----ceeeccccc------ccchhheec-------ccc
Confidence 8763 1 1 344555553 335666653 233
Q ss_pred CCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCcc
Q 010640 183 YDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVN 262 (505)
Q Consensus 183 ~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad 262 (505)
.++.++ .+|+.+...++++ .+|..+++.++++++..++..++++.++++|+|
T Consensus 116 ~~~~~~-------------------------~~d~~~~~~~~~a---~~d~~~~l~v~aavg~~~~~~~~v~~lv~aGvD 167 (404)
T PRK06843 116 LEKSDA-------------------------YKNAEHKEDFPNA---CKDLNNKLRVGAAVSIDIDTIERVEELVKAHVD 167 (404)
T ss_pred chHHHH-------------------------Hhhhhhhhhcchh---hhhhhcCeEEEEEEeCCHHHHHHHHHHHhcCCC
Confidence 333333 3566666677776 778899999999998777788999999999999
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHH
Q 010640 263 VVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYK 342 (505)
Q Consensus 263 ~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~ 342 (505)
+|++|.++|++..+.+.++++++.+|++++++|+|.|.+.++.+.++|+|+|.++.++|++|+++...|+|.|+++++.+
T Consensus 168 vI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~ 247 (404)
T PRK06843 168 ILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICD 247 (404)
T ss_pred EEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccc
Q 010640 343 VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYL 422 (505)
Q Consensus 343 v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~ 422 (505)
++++++..++|||++|||+++.|++|||++||++||+|++|+.|.|||++.++++|++||.||||||++||..++.+|||
T Consensus 248 v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~agt~Espg~~~~~~g~~~K~yrGmgS~~Am~~~~~~ry~ 327 (404)
T PRK06843 248 VYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYF 327 (404)
T ss_pred HHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeeeeecCCCcEEEECCEEEEEEeccchHHHHhcccccccc
Confidence 99998888899999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred ccc---cccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEecccccccCccCccee
Q 010640 423 GDK---AKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVHGLVS 499 (505)
Q Consensus 423 ~~~---~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 499 (505)
++. .+.+++||+++.+||+|++.+++.+|.++||++|+|+|++||+|||++ ++|+++|+++++||||||+.-
T Consensus 328 ~~~~~~~~~~v~eGveg~v~~~G~v~~~~~~l~gglrs~m~y~Ga~~i~el~~~-----a~fv~~t~~~~~E~~~h~~~~ 402 (404)
T PRK06843 328 QLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKIN-----SKFVKISHSSLKESHPHDVFN 402 (404)
T ss_pred ccccccccccCCCccEEEecCCCCHHHHHHHHHHHHHHHhhccCCCcHHHHHhc-----CeEEEEchhhhhccCCCcccC
Confidence 842 356799999999999999999999999999999999999999999998 599999999999999999875
Q ss_pred c
Q 010640 500 Y 500 (505)
Q Consensus 500 ~ 500 (505)
+
T Consensus 403 ~ 403 (404)
T PRK06843 403 I 403 (404)
T ss_pred C
Confidence 4
No 10
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=100.00 E-value=4.3e-73 Score=565.24 Aligned_cols=347 Identities=48% Similarity=0.740 Sum_probs=313.0
Q ss_pred CCcccceeecCCCCCCCC--CCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHh
Q 010640 23 SYTYDDVIFLPHYIDFPI--DAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVS 100 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~--~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~ 100 (505)
+||||||+|+|+++++.+ .++++.|++++++.+++|+|+|+||++|+.+||++|++.||+|+||.++++++|.+++++
T Consensus 2 ~ltfdDVllvP~~s~v~~s~~dv~~~~~~~~~~~l~iPivsa~MDtVte~~mAiama~~Gglgvih~~~~~e~q~~~v~~ 81 (352)
T PF00478_consen 2 GLTFDDVLLVPGRSTVLPSRSDVSLSTKLTRNITLKIPIVSAPMDTVTESEMAIAMARLGGLGVIHRNMSIEEQAEEVKK 81 (352)
T ss_dssp E--GGGEEEE--SBSSTGGGGG-BEEEESSTSEEESSSEEE-SSTTTSSHHHHHHHHHTTSEEEEESSSCHHHHHHHHHH
T ss_pred CCccccEEEecCCCCCCCCHhheECcccccCCEeecCceEecCccccchHHHHHHHHHhcCCceecCCCCHHHHHHHHhh
Confidence 589999999999988555 567777889999999999999999999999999999999999999999999999999998
Q ss_pred hhccCCccccCCCeeEeCCCCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEec
Q 010640 101 AKSRRVPIFSSSLDVFKAPDGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVP 180 (505)
Q Consensus 101 v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~ 180 (505)
+++. .|
T Consensus 82 vK~~------~~-------------------------------------------------------------------- 87 (352)
T PF00478_consen 82 VKRY------YP-------------------------------------------------------------------- 87 (352)
T ss_dssp HHTH------HT--------------------------------------------------------------------
T ss_pred hccc------cc--------------------------------------------------------------------
Confidence 8764 11
Q ss_pred CCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcC
Q 010640 181 ANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAG 260 (505)
Q Consensus 181 ~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaG 260 (505)
.+ .+|..+++.++++++..++..++++.|+++|
T Consensus 88 --------------------------------------------~a---~~d~~~~l~V~aavg~~~~~~er~~~L~~ag 120 (352)
T PF00478_consen 88 --------------------------------------------NA---SKDEKGRLLVAAAVGTRDDDFERAEALVEAG 120 (352)
T ss_dssp --------------------------------------------TH---HBHTTSCBCEEEEEESSTCHHHHHHHHHHTT
T ss_pred --------------------------------------------cc---cccccccceEEEEecCCHHHHHHHHHHHHcC
Confidence 00 2344567889999998888999999999999
Q ss_pred ccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHH
Q 010640 261 VNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAV 340 (505)
Q Consensus 261 ad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l 340 (505)
+|+++||.++|++..+++.++++|+.+|+++||+|||.|.+.++.|+++|+|+|.|++|+|++|+||...|+|+|+++++
T Consensus 121 vD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv 200 (352)
T PF00478_consen 121 VDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAV 200 (352)
T ss_dssp -SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHH
T ss_pred CCEEEccccCccHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhc--ccc
Q 010640 341 YKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTK--GSD 418 (505)
Q Consensus 341 ~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~--~~~ 418 (505)
.+|+++++++++|||+||||+++.|++|||++|||+||+|++|+.|.|||++.++++|++||.||||||+.||.+ ++.
T Consensus 201 ~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt~EsPG~~~~~~g~~~K~yrGMgS~~A~~~~~~~~ 280 (352)
T PF00478_consen 201 YECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEVIYIDGKRYKKYRGMGSLGAMKKRRGSG 280 (352)
T ss_dssp HHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTSSSEEEEETTEEEEEEEETTSHHHHHHHSTTG
T ss_pred HHHHHHhhhccCceeecCCcCcccceeeeeeecccceeechhhccCcCCCCceEEECCeEEEEecccccHHHHhhccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986 889
Q ss_pred ccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEecccccccCccC
Q 010640 419 QRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVH 495 (505)
Q Consensus 419 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~ 495 (505)
+|||.+.....++||+++.+||+|++.+++.+|.++||++|+|+|++||+|||++ .+|+++|+++++||+||
T Consensus 281 ~ry~~~~~~~~v~eGve~~vp~~G~v~~~l~~l~gglrs~m~y~Ga~~i~el~~~-----~~fvrvs~a~~~e~~~H 352 (352)
T PF00478_consen 281 DRYFQAEDKKFVPEGVEGLVPYKGSVSDILPQLVGGLRSGMGYVGARSIKELRKK-----ARFVRVSSAGIKESHPH 352 (352)
T ss_dssp CTCTSSTSSTSSSSBEEEEEE-BB-HHHHHHHHHHHHHHHHHHTTSSBHHHHHHH-----HEEEEESHHHHHHHSS-
T ss_pred hhccccccccccccceeecCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhC-----CeEEEEChhhccccCCC
Confidence 9999887777899999999999999999999999999999999999999999999 59999999999999999
No 11
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=100.00 E-value=6.6e-64 Score=488.38 Aligned_cols=323 Identities=28% Similarity=0.398 Sum_probs=295.2
Q ss_pred CCcccceeecCCCCCCCC-CCeeeeeeec----CcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHH
Q 010640 23 SYTYDDVIFLPHYIDFPI-DAVSLSTRLT----RNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARL 97 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~-~~~~~~~~lt----~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~ 97 (505)
.|+|+||+|+|.++.+.+ +++++..+++ +.....+|+|+|+|+++++.+||++|++.|+++++|++++++++.++
T Consensus 8 ~l~f~DVll~P~~s~v~sRsevdl~~~~~~~~~~~~~~giPii~AnMdTV~~~~mA~~la~~g~~~~iHk~~~~e~~~~f 87 (346)
T PRK05096 8 KLGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTVGTFEMAKALASFDILTAVHKHYSVEEWAAF 87 (346)
T ss_pred CCCceeEEEecCcCccccHHHceecceeeeecccccccCCceEecCCCccccHHHHHHHHHCCCeEEEecCCCHHHHHHH
Confidence 899999999999998877 7999977776 45556799999999999999999999999999999999999998887
Q ss_pred HHhhhccCCccccCCCeeEeCCCCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCce
Q 010640 98 VVSAKSRRVPIFSSSLDVFKAPDGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNV 177 (505)
Q Consensus 98 v~~v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~ 177 (505)
+++++.. . .
T Consensus 88 v~~~~~~-------~-------------------------------~--------------------------------- 96 (346)
T PRK05096 88 VNNSSAD-------V-------------------------------L--------------------------------- 96 (346)
T ss_pred HHhcccc-------c-------------------------------c---------------------------------
Confidence 7653211 0 0
Q ss_pred EecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHH
Q 010640 178 SVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLV 257 (505)
Q Consensus 178 ~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li 257 (505)
..+.++++..++..++++.|+
T Consensus 97 -----------------------------------------------------------~~~~vavG~~~~d~er~~~L~ 117 (346)
T PRK05096 97 -----------------------------------------------------------KHVMVSTGTSDADFEKTKQIL 117 (346)
T ss_pred -----------------------------------------------------------ceEEEEecCCHHHHHHHHHHH
Confidence 011124445666889999999
Q ss_pred Hc--CccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcC
Q 010640 258 KA--GVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRG 335 (505)
Q Consensus 258 ea--Gad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p 335 (505)
++ ++|+|++|.++||+..+++.++++|+.+|+++||+|||.|.+.++.|+++|||+++|++|+|++|+|+...|.|.|
T Consensus 118 ~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~P 197 (346)
T PRK05096 118 ALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYP 197 (346)
T ss_pred hcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccccccChh
Confidence 94 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHh-
Q 010640 336 QATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMT- 414 (505)
Q Consensus 336 ~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~- 414 (505)
+++++.+|++++++.++|||+||||+++.||+|||++|||+||+|++|+.|+|||++.++.+|++||.||||||..||.
T Consensus 198 QltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K~yrGMgS~~Am~~ 277 (346)
T PRK05096 198 QLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEIVEENGEKFMLFYGMSSESAMKR 277 (346)
T ss_pred HHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCcccCCCcEEEECCEEEEEEeccccHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -ccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEeccc
Q 010640 415 -KGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGA 487 (505)
Q Consensus 415 -~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~ 487 (505)
.++.+||| .+||++.++||+|++.+++.+|.++||++|+|+|+++|+|||++ ++|+++|++
T Consensus 278 ~~g~~~ry~-------~~EG~~~~Vp~kG~v~~~i~~l~gGlrs~m~Y~Ga~~i~el~~~-----a~fv~vt~q 339 (346)
T PRK05096 278 HVGGVAEYR-------AAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKR-----TTFIRVQEQ 339 (346)
T ss_pred ccCcccccc-------cccCceEEeccCCcHHHHHHHHHHHHHHHHcccCcCcHHHHHhC-----CeEEEEChh
Confidence 47777886 47999999999999999999999999999999999999999999 699999876
No 12
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=100.00 E-value=4.4e-63 Score=483.07 Aligned_cols=323 Identities=28% Similarity=0.424 Sum_probs=298.2
Q ss_pred CCcccceeecCCCCCCCC-CCeeeeeeec----CcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHH
Q 010640 23 SYTYDDVIFLPHYIDFPI-DAVSLSTRLT----RNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARL 97 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~-~~~~~~~~lt----~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~ 97 (505)
.|+|+||+|+|.++.+.+ +++++.++++ ++..+.+|+|+|+|+++++.+||++|++.|+++++|++++++++.++
T Consensus 7 ~l~f~DVll~P~~s~v~sR~evdl~~~~~~~~~~~~~~~iPii~AnMdtv~~~~mA~~la~~g~~~~iHk~~~~e~~~~~ 86 (343)
T TIGR01305 7 KLDFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDTVGTFEMAAALSQHSIFTAIHKHYSVDEWKAF 86 (343)
T ss_pred CCCccceEEecCcCccCcHHHceeeEEEccccCCceeeCCceEecCCCcccCHHHHHHHHHCCCeEEEeeCCCHHHHHHH
Confidence 899999999999998877 8999999999 78899999999999999999999999999999999999999998877
Q ss_pred HHhhhccCCccccCCCeeEeCCCCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCce
Q 010640 98 VVSAKSRRVPIFSSSLDVFKAPDGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNV 177 (505)
Q Consensus 98 v~~v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~ 177 (505)
+++++.- .
T Consensus 87 v~~~~~~-------~----------------------------------------------------------------- 94 (343)
T TIGR01305 87 ATNSSPD-------C----------------------------------------------------------------- 94 (343)
T ss_pred HHhhccc-------c-----------------------------------------------------------------
Confidence 7643220 0
Q ss_pred EecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHH
Q 010640 178 SVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLV 257 (505)
Q Consensus 178 ~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li 257 (505)
. ..+.++++..++..++++.|+
T Consensus 95 --------------------------------------------------------~--~~~~vsvG~~~~d~er~~~L~ 116 (343)
T TIGR01305 95 --------------------------------------------------------L--QNVAVSSGSSDNDLEKMTSIL 116 (343)
T ss_pred --------------------------------------------------------c--ceEEEEeccCHHHHHHHHHHH
Confidence 0 011124445666889999999
Q ss_pred HcC--ccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcC
Q 010640 258 KAG--VNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRG 335 (505)
Q Consensus 258 eaG--ad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p 335 (505)
+++ +|+|++|.++||+..+++.++++|+.||+.+|+.|||.|++.|+.|+++|||+|+|++|+|++|++|..+|.|.|
T Consensus 117 ~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~p 196 (343)
T TIGR01305 117 EAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYP 196 (343)
T ss_pred hcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcC
Confidence 985 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHh-
Q 010640 336 QATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMT- 414 (505)
Q Consensus 336 ~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~- 414 (505)
+++++.+|+++++..++|||+||||+++.||+|||++||++||+|++|+.+.|+|++..+++|++||.||||||..||.
T Consensus 197 qltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG~~Espg~~i~~~G~~~K~yrGMgS~~Am~~ 276 (343)
T TIGR01305 197 QLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHTESGGEVIERNGRKFKLFYGMSSDTAMKK 276 (343)
T ss_pred HHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhCcCcCcceeEeECCEEEEEEeccchHHHHhh
Confidence 9999999999998889999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -ccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEeccc
Q 010640 415 -KGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGA 487 (505)
Q Consensus 415 -~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~ 487 (505)
.++.+|||. +||++.++||+|++.+++.+|.++||++|+|+|+++|+||+++ ++|+++|++
T Consensus 277 ~~g~~~ry~~-------~EG~e~~vp~kG~v~~~l~~l~gGlrs~m~Y~Ga~~i~el~~~-----a~fv~vt~~ 338 (343)
T TIGR01305 277 HAGGVAEYRA-------SEGKTVEVPYRGDVENTILDILGGLRSACTYVGAAKLKELSKR-----ATFIRVTQQ 338 (343)
T ss_pred ccCccccccc-------ccCceEEeccCCcHHHHHHHHHHHHHHHhhccCcCcHHHHHhC-----CEEEEECcc
Confidence 477788875 3899999999999999999999999999999999999999998 699999887
No 13
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=100.00 E-value=3.5e-57 Score=455.64 Aligned_cols=325 Identities=53% Similarity=0.815 Sum_probs=296.8
Q ss_pred CCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhhh
Q 010640 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAK 102 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v~ 102 (505)
+||||||+|+|+++++.++++++.|++++.+.+++|+|++||+++++.+|++++++.||+|++|.+++++++.+.+++++
T Consensus 1 ~~~~ddv~l~p~~~~~~~~~vdl~t~l~~~~~l~~Piv~apM~~vt~~~ma~ava~~GglGvi~~~~~~~~~~~~i~~vk 80 (325)
T cd00381 1 GLTFDDVLLVPGYSTVLPSEVDLSTKLTKNITLNIPLVSAPMDTVTESEMAIAMARLGGIGVIHRNMSIEEQAEEVRKVK 80 (325)
T ss_pred CCCcccEEEeCCCCCCCHHHceeeEEecCccccCCCEEecCCCcCCcHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHhc
Confidence 48999999999999999999999999999899999999999999999999999999999999999998888776666543
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCC
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPAN 182 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~ 182 (505)
. +
T Consensus 81 ~--------~---------------------------------------------------------------------- 82 (325)
T cd00381 81 G--------R---------------------------------------------------------------------- 82 (325)
T ss_pred c--------C----------------------------------------------------------------------
Confidence 1 1
Q ss_pred CCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCcc
Q 010640 183 YDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVN 262 (505)
Q Consensus 183 ~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad 262 (505)
+.+++.++..++..++++.++++|++
T Consensus 83 ------------------------------------------------------l~v~~~~~~~~~~~~~~~~l~eagv~ 108 (325)
T cd00381 83 ------------------------------------------------------LLVGAAVGTREDDKERAEALVEAGVD 108 (325)
T ss_pred ------------------------------------------------------ceEEEecCCChhHHHHHHHHHhcCCC
Confidence 01111222223466889999999999
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHH
Q 010640 263 VVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYK 342 (505)
Q Consensus 263 ~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~ 342 (505)
+++++.++|++..+.+.++++++.+|+++|++|++.|.+.|+.+.++|+|+|+++.++|+.|.++...+++.|+++++.+
T Consensus 109 ~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~ 188 (325)
T cd00381 109 VIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVAD 188 (325)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHH
Confidence 99999999988888999999999987799999999999999999999999999988888889998889999999999999
Q ss_pred HHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccc
Q 010640 343 VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYL 422 (505)
Q Consensus 343 v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~ 422 (505)
+.+.++..++|||++|||.++.|++|||++||++||+|++|+.|.|||++..+++|+++|.||||+|+.+|..++.+|||
T Consensus 189 v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~Es~g~~~~~~g~~~~~~~g~~s~~~~~~~~~~~~~ 268 (325)
T cd00381 189 VAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGSLGAMKKGGGDRYF 268 (325)
T ss_pred HHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhcccccCCCcEEEECCeeeeeEecccchhhhhcCcccccc
Confidence 99988877899999999999999999999999999999999999999999999999999999999999999988889999
Q ss_pred ccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEe
Q 010640 423 GDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVR 484 (505)
Q Consensus 423 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~ 484 (505)
++..+..++||+++.+|++|++.+.+.+|.++||++|+|+|++||+|||++ ++|+++
T Consensus 269 ~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~y~G~~~l~~~~~~-----~~~~~~ 325 (325)
T cd00381 269 GEEAKKLVPEGVEGIVPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEK-----ARFVRI 325 (325)
T ss_pred ccccccccCCceEEEEecCCcHHHHHHHHHHHHHHHHHhcCCCcHHHHHhc-----CeEEeC
Confidence 987788899999999999999999999999999999999999999999999 588874
No 14
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=100.00 E-value=4.3e-50 Score=396.78 Aligned_cols=315 Identities=27% Similarity=0.421 Sum_probs=275.7
Q ss_pred CCcccceeecCCCCCC-CCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhh
Q 010640 23 SYTYDDVIFLPHYIDF-PIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSA 101 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~-~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v 101 (505)
.|||||+.|+|..... ..++++++++++ ++++.+|+++++|++.++.+|+.++.+.|.++++|+ ++++++.+.+++.
T Consensus 1 ~~~FddV~lvp~~lp~~s~~dVdlst~~~-~~~l~~P~~inAM~t~in~~LA~~a~~~G~~~i~hK-~~~E~~~sfvrk~ 78 (321)
T TIGR01306 1 VFDYEDIQLIPNKCIVNSRSECDTSVTLG-KHKFKLPVVPANMQTIIDEKLAEQLAENGYFYIMHR-FDEESRIPFIKDM 78 (321)
T ss_pred CCCcccEEEecCCCCCCCHHHceeeEEEC-CcEecCcEEeeccchhhhHHHHHHHHHcCCEEEEec-CCHHHHHHHHHhc
Confidence 3899999999998544 458999999999 889999999999999999999999999999999998 6888776544321
Q ss_pred hccCCccccCCCeeEeCCCCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecC
Q 010640 102 KSRRVPIFSSSLDVFKAPDGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPA 181 (505)
Q Consensus 102 ~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~ 181 (505)
+ +
T Consensus 79 k---------~--------------------------------------------------------------------- 80 (321)
T TIGR01306 79 Q---------E--------------------------------------------------------------------- 80 (321)
T ss_pred c---------c---------------------------------------------------------------------
Confidence 1 1
Q ss_pred CCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcC-
Q 010640 182 NYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAG- 260 (505)
Q Consensus 182 ~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaG- 260 (505)
..+.++++++..++..+++..++++|
T Consensus 81 -----------------------------------------------------~~L~v~~SvG~t~e~~~r~~~lv~a~~ 107 (321)
T TIGR01306 81 -----------------------------------------------------RGLFASISVGVKACEYEFVTQLAEEAL 107 (321)
T ss_pred -----------------------------------------------------cccEEEEEcCCCHHHHHHHHHHHhcCC
Confidence 01234556666777889999999998
Q ss_pred -ccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcC--hH
Q 010640 261 -VNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRG--QA 337 (505)
Q Consensus 261 -ad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p--~~ 337 (505)
+|++++|.+|||+..+++.++++++.+|...+++|+|.+.+.|+.|.++|+|+|+|++|+|++|+++...+.|.+ ++
T Consensus 108 ~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l 187 (321)
T TIGR01306 108 TPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQL 187 (321)
T ss_pred CCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHH
Confidence 799999999999999999999999999777799999999999999999999999999999999999988777765 78
Q ss_pred HHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccc
Q 010640 338 TAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGS 417 (505)
Q Consensus 338 ~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~ 417 (505)
+++.++++.+ ++|||+||||+++.|++|||++|||+||+|++|+.|.|||++..+.+|++||.||||++.
T Consensus 188 ~ai~ev~~a~---~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~~Espg~~~~~~g~~~k~y~g~~~~------- 257 (321)
T TIGR01306 188 AALRWCAKAA---RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGHEESPGETVEKDGKLYKEYFGSASE------- 257 (321)
T ss_pred HHHHHHHHhc---CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCcccCCCceEeeCCeEHhhhcCchhh-------
Confidence 8898887754 589999999999999999999999999999999999999999999999999999998642
Q ss_pred cccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEeccccccc
Q 010640 418 DQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVE 491 (505)
Q Consensus 418 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~~~~e 491 (505)
|..+.. ...||+++.+|++|++.+++.+|.++||++|+|+|+++|+|||+ ++|++++.++..+
T Consensus 258 ---~~~~~~--~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~~~G~~~l~~~~~------~~~~~~~~~~~~~ 320 (321)
T TIGR01306 258 ---FQKGEH--KNVEGKKMFVEHKGSLSDTLIEMQQDLQSSISYAGGKDLDSLRT------VDYVIVKNSIFNG 320 (321)
T ss_pred ---hccccc--ccccceEEEeccCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHhh------CCEEEEecCCcCC
Confidence 222221 22499999999999999999999999999999999999999996 4999999998764
No 15
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=100.00 E-value=2.1e-47 Score=379.50 Aligned_cols=317 Identities=26% Similarity=0.424 Sum_probs=276.6
Q ss_pred CCcccceeecCCCC-CCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhh
Q 010640 23 SYTYDDVIFLPHYI-DFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSA 101 (505)
Q Consensus 23 ~~~~~d~~l~p~~~-~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v 101 (505)
+|+|||+.|+|... ....++++++++++ ++++..|+++++|.+.++.+||..+.+.|+++++|+ ++++++...++++
T Consensus 4 ~l~Fddv~lv~~~lp~~s~~dvdlst~~~-~~~l~~P~~inAM~t~iN~~LA~~a~~~G~~~~~~k-~~~e~~~~~~r~~ 81 (326)
T PRK05458 4 VFDYEDIQLIPNKCIVNSRSECDTSVTLG-PRTFKLPVVPANMQTIIDEKIAEWLAENGYFYIMHR-FDPEARIPFIKDM 81 (326)
T ss_pred ccCccceEEecCCCCCCCHHHcccceEEC-CcEecCcEEEecccchhHHHHHHHHHHcCCEEEEec-CCHHHHHHHHHhc
Confidence 69999999999874 54558999999998 789999999999999999999999999999999999 7787765555221
Q ss_pred hccCCccccCCCeeEeCCCCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecC
Q 010640 102 KSRRVPIFSSSLDVFKAPDGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPA 181 (505)
Q Consensus 102 ~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~ 181 (505)
+|
T Consensus 82 ---------~~--------------------------------------------------------------------- 83 (326)
T PRK05458 82 ---------HE--------------------------------------------------------------------- 83 (326)
T ss_pred ---------cc---------------------------------------------------------------------
Confidence 11
Q ss_pred CCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCc
Q 010640 182 NYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGV 261 (505)
Q Consensus 182 ~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGa 261 (505)
.+++++++++..++..+++..++++|+
T Consensus 84 -----------------------------------------------------~~l~v~~~vg~~~~~~~~~~~Lv~ag~ 110 (326)
T PRK05458 84 -----------------------------------------------------QGLIASISVGVKDDEYDFVDQLAAEGL 110 (326)
T ss_pred -----------------------------------------------------cccEEEEEecCCHHHHHHHHHHHhcCC
Confidence 012345566666668899999999955
Q ss_pred --cEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcC--hH
Q 010640 262 --NVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRG--QA 337 (505)
Q Consensus 262 --d~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p--~~ 337 (505)
|++.+|.++||+....+.++++++.+|+++||+|+|.|.++++.|.++|+|++.+++++|+.|.++...+.+.| ++
T Consensus 111 ~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l 190 (326)
T PRK05458 111 TPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQL 190 (326)
T ss_pred CCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988877777788 77
Q ss_pred HHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccc
Q 010640 338 TAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGS 417 (505)
Q Consensus 338 ~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~ 417 (505)
+++.++++. .++|||++|||+++.|++|||++||++||+|++|+.+.|||++..+++|++||.||||.+
T Consensus 191 ~ai~~~~~~---~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~espg~~~~~~g~~~k~y~g~~~-------- 259 (326)
T PRK05458 191 AALRWCAKA---ARKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGKTVEIDGKLYKEYFGSAS-------- 259 (326)
T ss_pred HHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCCccCCCceeeecchhHHHhhCcHh--------
Confidence 788888764 359999999999999999999999999999999999999999999999999999999764
Q ss_pred cccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEecccccccCc
Q 010640 418 DQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGG 493 (505)
Q Consensus 418 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~ 493 (505)
+|..+. ....||+++.+|++|++.++|.+|.++||++|+|+|++||+|||+ ++|+++|.+++.|..
T Consensus 260 --~~~~~~--~~~~eG~e~~v~~~G~l~~~l~~l~~gLr~~m~~~Ga~~i~el~~------~~~v~~~~~~~~~~~ 325 (326)
T PRK05458 260 --EFQKGE--YKNVEGKKILVPHKGSLKDTLTEMEQDLQSSISYAGGRDLDAIRK------VDYVIVKNSIFNGDK 325 (326)
T ss_pred --hhcccc--ccccCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHhc------CCEEEEecCcccccc
Confidence 232211 233499999999999999999999999999999999999999996 499999999998853
No 16
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=100.00 E-value=9.8e-45 Score=367.99 Aligned_cols=320 Identities=26% Similarity=0.396 Sum_probs=253.4
Q ss_pred CCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEc------CCCCHHHHHH
Q 010640 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVH------SNCTAADQAR 96 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~------~~~~~~~~~~ 96 (505)
+++||||.|+|+++++.++++++.|.+ +++.+.+|+++++|+++++..|+.++++.|++|++| ...+++.+..
T Consensus 15 ~~~fddV~lvp~~~~~~~~dvdls~~~-~~~~i~~Piv~a~M~gVt~~~la~avs~~GglGvl~~~gl~~~~~~~e~l~~ 93 (368)
T PRK08649 15 AYGLDEIAIVPSRRTRDPEDVSTSWQI-DAYRFEIPIIASPMDAVVSPETAIELGKLGGLGVLNLEGLWTRYEDPEPILD 93 (368)
T ss_pred cCCcceEEEeCCCCCCCHHHceeeeee-cceeccCcEeccCCcccCCHHHHHHHHhCCCceEEeeccccccCCCHHHHHH
Confidence 789999999999999999999999665 699999999999999999999999999999999999 5566776665
Q ss_pred HHHhhhccCCccccCCCeeEeCCCCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCc
Q 010640 97 LVVSAKSRRVPIFSSSLDVFKAPDGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSN 176 (505)
Q Consensus 97 ~v~~v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~ 176 (505)
++...+. .++.+.+++ + .. .+
T Consensus 94 qi~~~~~--------------------~~~~~~~~~------------------------------------~-~~--~P 114 (368)
T PRK08649 94 EIASLGK--------------------DEATRLMQE------------------------------------L-YA--EP 114 (368)
T ss_pred HHHhcCc--------------------HHHHHHHHH------------------------------------h-hc--CC
Confidence 5543221 011111111 0 00 00
Q ss_pred eEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHH
Q 010640 177 VSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHL 256 (505)
Q Consensus 177 ~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~l 256 (505)
...+.+.+.++.+.+.+ ++| ...+ .+.+..++++.+
T Consensus 115 ---~~p~l~~~iv~~~~~~~---V~v-------------------------------------~vr~-~~~~~~e~a~~l 150 (368)
T PRK08649 115 ---IKPELITERIAEIRDAG---VIV-------------------------------------AVSL-SPQRAQELAPTV 150 (368)
T ss_pred ---CCHHHHHHHHHHHHhCe---EEE-------------------------------------EEec-CCcCHHHHHHHH
Confidence 00111233333444321 221 1122 234578999999
Q ss_pred HHcCccEEEEeC-----CCCCch-hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeeccccc
Q 010640 257 VKAGVNVVVLDS-----SQGNSS-FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVC 330 (505)
Q Consensus 257 ieaGad~I~i~~-----~~g~~~-~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~ 330 (505)
+++|+|++++|. .++++. .+.+..+.+++ . ++||++|++.|.+.++.+.++|||+|.++.|+|+.|+++...
T Consensus 151 ~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~-~-~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~Gs~~~t~~~~ 228 (368)
T PRK08649 151 VEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE-L-DVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVL 228 (368)
T ss_pred HHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHH-C-CCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcCCCCcccC
Confidence 999999999975 233333 35555554554 4 899999999999999999999999999998888899998899
Q ss_pred ccCcChHHHHHHHHHHHhhc-------CCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeee
Q 010640 331 AVGRGQATAVYKVSSIAAQS-------GVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKK 403 (505)
Q Consensus 331 g~g~p~~~~l~~v~~~~~~~-------~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~ 403 (505)
++|.|+++++.+++++++++ ++|||++|||+++.|++|||++||++||+|++|+.|.|||++..
T Consensus 229 g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg~~~--------- 299 (368)
T PRK08649 229 GIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPGRGW--------- 299 (368)
T ss_pred CCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCCCccc---------
Confidence 99999999999998765543 59999999999999999999999999999999999999999974
Q ss_pred ecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHH----------HHHHHHHHHhhccCCCCHHHHHHh
Q 010640 404 YRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIP----------YTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 404 ~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----------~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
||||+|.. ..++||+++++||+|+++++|. +|.++||++|+|+|++||+|||+.
T Consensus 300 ~~gm~s~~----------------~~~~eg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~l~~~m~~~g~~~~~~~~~~ 363 (368)
T PRK08649 300 HWGMAAPH----------------PSLPRGTRIKVGTTGSLEQILFGPSHLPDGTHNLVGALRRSMATLGYSDLKEFQKV 363 (368)
T ss_pred ccCcccCC----------------CcCCCceEEeCCCcCcHHHHhcCcccccchHHHHHHHHHHHHHhcCCCcHHHHhhc
Confidence 68999843 3589999999999999999998 999999999999999999999985
No 17
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=100.00 E-value=2.9e-34 Score=290.52 Aligned_cols=321 Identities=25% Similarity=0.371 Sum_probs=227.5
Q ss_pred CCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEc------CCCCHHHHHH
Q 010640 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVH------SNCTAADQAR 96 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~------~~~~~~~~~~ 96 (505)
+|+||||.|+|+++.+.|+++++.|.+ +++.+.+|++.|||+.++...++..+.+.|++|++. .+..++...
T Consensus 12 ~~~~d~i~~vp~~~t~~~~~v~~~~~i-~~~~l~~PivlAPMagVtd~~fr~~~~~~Galgvvsaegl~~~~~~~~~~~- 89 (369)
T TIGR01304 12 TYSLDDISVVPSRRTRSSKDVDTAWQI-DAYRFELPFIAHPMDALVSPEFAIELGELGGLGVLNLEGLWGRHEDPDPAI- 89 (369)
T ss_pred cCCcceEEEcCCCCCCChhhccceeEE-cceecCCceeecCCCcccCHHHHHHHHHcCCcccccchHHHhcCCCHHHHH-
Confidence 799999999999999999999999987 699999999999999999999999999999999864 233333222
Q ss_pred HHHhhhccCCccccCCCeeEeCCCCCHHHHHHHhcC-CeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCC
Q 010640 97 LVVSAKSRRVPIFSSSLDVFKAPDGCINDANDFDGS-NYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSS 175 (505)
Q Consensus 97 ~v~~v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~ 175 (505)
.++... .++....++.+++.+ +. .
T Consensus 90 --~QI~g~-------------~~~~~~a~aa~~~~e~~~----------------------------------------~ 114 (369)
T TIGR01304 90 --AKIAEA-------------YEEGDQAAATRLLQELHA----------------------------------------A 114 (369)
T ss_pred --HHHhhc-------------CCChHHHHHHHHHHHcCC----------------------------------------C
Confidence 111111 111111345544433 10 0
Q ss_pred ceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHH
Q 010640 176 NVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEH 255 (505)
Q Consensus 176 ~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~ 255 (505)
+ + ...-+.+.++.+.+.. +.+...+ .+....+.++.
T Consensus 115 ~--~-~p~l~~~ii~~vr~a~----------------------------------------VtvkiRl-~~~~~~e~a~~ 150 (369)
T TIGR01304 115 P--L-KPELLGERIAEVRDSG----------------------------------------VITAVRV-SPQNAREIAPI 150 (369)
T ss_pred c--c-ChHHHHHHHHHHHhcc----------------------------------------eEEEEec-CCcCHHHHHHH
Confidence 0 0 0011122222222211 1222233 23457899999
Q ss_pred HHHcCccEEEEeCCC---CC---chhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccc
Q 010640 256 LVKAGVNVVVLDSSQ---GN---SSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEV 329 (505)
Q Consensus 256 lieaGad~I~i~~~~---g~---~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~ 329 (505)
++++|+|++++|... .+ ...+. .+.++++.+ ++||++|++.+.++++++.++|+|+|.++ .|+.++++..
T Consensus 151 l~eAGad~I~ihgrt~~q~~~sg~~~p~-~l~~~i~~~-~IPVI~G~V~t~e~A~~~~~aGaDgV~~G--~gg~~~~~~~ 226 (369)
T TIGR01304 151 VVKAGADLLVIQGTLVSAEHVSTSGEPL-NLKEFIGEL-DVPVIAGGVNDYTTALHLMRTGAAGVIVG--PGGANTTRLV 226 (369)
T ss_pred HHHCCCCEEEEeccchhhhccCCCCCHH-HHHHHHHHC-CCCEEEeCCCCHHHHHHHHHcCCCEEEEC--CCCCcccccc
Confidence 999999999998531 11 12233 344455555 89999999999999999999999999854 3445667777
Q ss_pred cccCcChHHHHHHHHHHHhh----cC---CcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEee
Q 010640 330 CAVGRGQATAVYKVSSIAAQ----SG---VPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVK 402 (505)
Q Consensus 330 ~g~g~p~~~~l~~v~~~~~~----~~---ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k 402 (505)
.+++.|+++++.+++++++. .+ +|||++|||+++.|++|||++|||+||+|++|+.+.|||+.-+||
T Consensus 227 lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg~~~~w------ 300 (369)
T TIGR01304 227 LGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGRGYFW------ 300 (369)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCCCCCcc------
Confidence 78999999999998766542 33 999999999999999999999999999999999999999998776
Q ss_pred eecccCcHHHHhccccccccccccccccccceeeeeccCC---chhhHH----------HHHHHHHHHHhhccCCCCHHH
Q 010640 403 KYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKG---SVLKFI----------PYTMQAVKQGFQDLGASSLQS 469 (505)
Q Consensus 403 ~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~----------~~l~~~l~~~m~~~G~~~~~~ 469 (505)
||.. ....+|+|....+...| +++++| .+|.++||++|..+|+.+++|
T Consensus 301 ---~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~n~~g~~~~~~~~~g~~~~~~ 361 (369)
T TIGR01304 301 ---PAAA----------------AHPRLPRGVVTESGTVGEAPTLEEILHGPSTLPDGVENFEGGLKRAMAKCGYTDLKE 361 (369)
T ss_pred ---chhh----------------cCccCCccccccccccCCCCcHHHHeeCCCCCCcchhhhHHHHHHHHHHcCchhhhh
Confidence 3321 11224444333332222 455555 589999999999999999999
Q ss_pred HHHh
Q 010640 470 AHDL 473 (505)
Q Consensus 470 l~~~ 473 (505)
||+.
T Consensus 362 ~~~~ 365 (369)
T TIGR01304 362 FQKV 365 (369)
T ss_pred hhhc
Confidence 9985
No 18
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.92 E-value=1.8e-23 Score=211.45 Aligned_cols=161 Identities=25% Similarity=0.323 Sum_probs=125.5
Q ss_pred cCccEEEEeCCC--------CC--chhHHHHHHHHHHhCCCceEEEccc---CCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 259 AGVNVVVLDSSQ--------GN--SSFQIEMIKYAKKTYPELDVIGGNV---VTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 259 aGad~I~i~~~~--------g~--~~~~~~~i~~l~~~~~~~~Vi~g~V---~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
.+++++.++... +. ...+++.++.+++.+ ++||++|.+ .+.++++.+.++|+|+|+++++||+...
T Consensus 139 ~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~ 217 (326)
T cd02811 139 IEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKAL-SVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTSWA 217 (326)
T ss_pred cCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCccc
Confidence 456776666522 22 134557888888887 899999766 6899999999999999999865442110
Q ss_pred --------------cccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCc
Q 010640 326 --------------TQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPG 391 (505)
Q Consensus 326 --------------~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~ 391 (505)
...+.+|++|+..++.++++... ++|||++|||+++.|++|||++||++|++|++|+...
T Consensus 218 ~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~--~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~---- 291 (326)
T cd02811 218 RVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP--DLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAA---- 291 (326)
T ss_pred ccccccccccccccccccccccccHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHH----
Confidence 12246789999999988876543 6999999999999999999999999999999997321
Q ss_pred cceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHH
Q 010640 392 AYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAH 471 (505)
Q Consensus 392 ~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~ 471 (505)
. .|.+ .+.++++.|..+||..|.++|++++.||+
T Consensus 292 ----------------------~-----------------~g~~-------~~~~~i~~~~~el~~~m~~~G~~si~el~ 325 (326)
T cd02811 292 ----------------------L-----------------EGEE-------AVIETIEQIIEELRTAMFLTGAKNLAELK 325 (326)
T ss_pred ----------------------h-----------------cCHH-------HHHHHHHHHHHHHHHHHHHhCCCCHHHhc
Confidence 0 0111 47799999999999999999999999997
Q ss_pred H
Q 010640 472 D 472 (505)
Q Consensus 472 ~ 472 (505)
+
T Consensus 326 ~ 326 (326)
T cd02811 326 Q 326 (326)
T ss_pred C
Confidence 3
No 19
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.90 E-value=2.1e-22 Score=205.28 Aligned_cols=163 Identities=23% Similarity=0.303 Sum_probs=127.4
Q ss_pred cCccEEEEeCCC--------CC--chhHHHHHHHHHHhCCCceEEEccc---CCHHHHHHHHHcCCCEEEEccCCcce--
Q 010640 259 AGVNVVVLDSSQ--------GN--SSFQIEMIKYAKKTYPELDVIGGNV---VTMYQAQNLIEAGVDGLRVGMGSGSI-- 323 (505)
Q Consensus 259 aGad~I~i~~~~--------g~--~~~~~~~i~~l~~~~~~~~Vi~g~V---~t~e~a~~l~~aGad~I~v~~g~g~~-- 323 (505)
.++|++.++... ++ ...+++.++++++.+ ++||++|.+ .+.+.++.+.++|+|+|+|++++|+.
T Consensus 147 ~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~ 225 (352)
T PRK05437 147 IEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSAL-PVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWA 225 (352)
T ss_pred cCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhh-CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCcc
Confidence 356676666422 22 134568888898887 899999877 68999999999999999998655421
Q ss_pred --eecc--------cccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccc
Q 010640 324 --CTTQ--------EVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAY 393 (505)
Q Consensus 324 --~~~~--------~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~ 393 (505)
+..+ .+.+||.|++.++.++++.. .++|||++|||+++.|++|++++||++|++|++|+...
T Consensus 226 ~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~--~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~------ 297 (352)
T PRK05437 226 AIENYRARDDRLASYFADWGIPTAQSLLEARSLL--PDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAA------ 297 (352)
T ss_pred chhhhhhhccccccccccccCCHHHHHHHHHHhc--CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHH------
Confidence 1112 25688999999998887653 36999999999999999999999999999999986310
Q ss_pred eeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 394 VYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 394 ~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
...|.+ .+.++++.|..+||..|.++|+++++||++.
T Consensus 298 ------------------------------------~~~g~~-------~v~~~i~~~~~eL~~~m~~~G~~~i~eL~~~ 334 (352)
T PRK05437 298 ------------------------------------LEGGEE-------AVIELIEQWIEELKIAMFLTGAKNIAELRKV 334 (352)
T ss_pred ------------------------------------HhccHH-------HHHHHHHHHHHHHHHHHHHhCCCCHHHhCCC
Confidence 011211 4778999999999999999999999999875
No 20
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=99.90 E-value=3.7e-22 Score=203.13 Aligned_cols=143 Identities=28% Similarity=0.409 Sum_probs=117.5
Q ss_pred hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcE
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPV 354 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipv 354 (505)
..++.++++++.+ ++||++|+|.+.++|+.+.++|+|+|+|+++||+- .+|+.|++.+|.++++.+. .++||
T Consensus 212 ~~w~~i~~~~~~~-~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~------~d~~~~~~~~L~~i~~~~~-~~~~i 283 (356)
T PF01070_consen 212 LTWDDIEWIRKQW-KLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQ------LDWGPPTIDALPEIRAAVG-DDIPI 283 (356)
T ss_dssp -SHHHHHHHHHHC-SSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTS------STTS-BHHHHHHHHHHHHT-TSSEE
T ss_pred CCHHHHHHHhccc-CCceEEEecccHHHHHHHHhcCCCEEEecCCCccc------CccccccccccHHHHhhhc-CCeeE
Confidence 4568899999998 89999999999999999999999999999887753 5689999999999998764 46999
Q ss_pred EecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccce
Q 010640 355 IADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGV 434 (505)
Q Consensus 355 Ia~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~ 434 (505)
|+||||+++.|++||++|||++|.+|++|+. +.+ ..|.
T Consensus 284 ~~dgGir~g~Dv~kalaLGA~~v~igr~~l~--------------------~l~----------------------~~g~ 321 (356)
T PF01070_consen 284 IADGGIRRGLDVAKALALGADAVGIGRPFLY--------------------ALA----------------------AGGE 321 (356)
T ss_dssp EEESS--SHHHHHHHHHTT-SEEEESHHHHH--------------------HHH----------------------HHHH
T ss_pred EEeCCCCCHHHHHHHHHcCCCeEEEccHHHH--------------------HHH----------------------HhhH
Confidence 9999999999999999999999999999962 211 1222
Q ss_pred eeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhh
Q 010640 435 VGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLL 474 (505)
Q Consensus 435 ~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~ 474 (505)
+ .+.+.++.|..+|+.+|+++|++++.||++..
T Consensus 322 ~-------gv~~~~~~l~~el~~~m~l~G~~~~~~l~~~~ 354 (356)
T PF01070_consen 322 E-------GVERVLEILKEELKRAMFLLGARSIAELRRSL 354 (356)
T ss_dssp H-------HHHHHHHHHHHHHHHHHHHHT-SBGGGHTGGG
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHCCCCHHHhCHHh
Confidence 2 47899999999999999999999999999864
No 21
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=99.89 E-value=9e-22 Score=198.71 Aligned_cols=143 Identities=22% Similarity=0.280 Sum_probs=121.6
Q ss_pred hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcE
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPV 354 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipv 354 (505)
-.++.++++|+.+ ++||++|+|.+.++|+.+.++|+|+|+|++++|+. . ++..+++.+|.++++... .++||
T Consensus 211 ~tW~di~wlr~~~-~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrq-----l-d~~~~t~~~L~ei~~av~-~~~~v 282 (367)
T PLN02493 211 LSWKDVQWLQTIT-KLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQ-----L-DYVPATISALEEVVKATQ-GRIPV 282 (367)
T ss_pred CCHHHHHHHHhcc-CCCEEeecCCCHHHHHHHHHcCCCEEEECCCCCCC-----C-CCchhHHHHHHHHHHHhC-CCCeE
Confidence 3578899999998 89999999999999999999999999999888742 2 355688999999877654 35999
Q ss_pred EecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccce
Q 010640 355 IADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGV 434 (505)
Q Consensus 355 Ia~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~ 434 (505)
|+||||+++.|++|||++||++|++|++|+...++. |.
T Consensus 283 i~dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~~~------------------------------------------G~ 320 (367)
T PLN02493 283 FLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAE------------------------------------------GE 320 (367)
T ss_pred EEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhc------------------------------------------CH
Confidence 999999999999999999999999999997322111 11
Q ss_pred eeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhh
Q 010640 435 VGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLL 474 (505)
Q Consensus 435 ~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~ 474 (505)
+ .+...++.|..+|+.+|.++||+++.||++..
T Consensus 321 ~-------gv~~~l~~l~~el~~~m~l~G~~~i~~l~~~~ 353 (367)
T PLN02493 321 A-------GVRKVLQMLRDEFELTMALSGCRSLKEISRNH 353 (367)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHhCCCCHHHhChhh
Confidence 1 37899999999999999999999999998763
No 22
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=99.89 E-value=2.3e-21 Score=196.07 Aligned_cols=142 Identities=24% Similarity=0.316 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhc--CC
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQS--GV 352 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~--~i 352 (505)
..++.++++++.+ ++||++|++.+.++|+.+.++|+|+|++++++|.. .. ...+++.++.++.+..+.. ++
T Consensus 200 ~~~~~i~~l~~~~-~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~-----~d-~~~~~~~~L~~i~~~~~~~~~~~ 272 (344)
T cd02922 200 LTWDDIKWLRKHT-KLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQ-----LD-TAPAPIEVLLEIRKHCPEVFDKI 272 (344)
T ss_pred CCHHHHHHHHHhc-CCcEEEEcCCCHHHHHHHHHcCCCEEEEECCCccc-----CC-CCCCHHHHHHHHHHHHHHhCCCc
Confidence 4578899999988 89999999999999999999999999999877653 22 3467888898888765433 59
Q ss_pred cEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccccccccccccc
Q 010640 353 PVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQ 432 (505)
Q Consensus 353 pvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~ 432 (505)
|||++|||+++.|++|||++||++|++|++|+.+.++.+. +
T Consensus 273 ~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~~~G~---------------------------------------~ 313 (344)
T cd02922 273 EVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALSAYGE---------------------------------------E 313 (344)
T ss_pred eEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhccH---------------------------------------H
Confidence 9999999999999999999999999999999754322110 1
Q ss_pred ceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHH
Q 010640 433 GVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHD 472 (505)
Q Consensus 433 g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~ 472 (505)
.+.+.++.|..+|+..|.++|+++++||+.
T Consensus 314 ----------gv~~~l~~l~~EL~~~m~l~G~~~i~~l~~ 343 (344)
T cd02922 314 ----------GVEKAIQILKDEIETTMRLLGVTSLDQLGP 343 (344)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHhCCCCHHHhCc
Confidence 478999999999999999999999999964
No 23
>PLN02979 glycolate oxidase
Probab=99.89 E-value=1.8e-21 Score=194.69 Aligned_cols=143 Identities=22% Similarity=0.285 Sum_probs=121.4
Q ss_pred hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcE
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPV 354 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipv 354 (505)
-.++.++++++.+ ++||++|+|.+.++|+.+.++|+|+|+|++++|+. . +++.+++.++.++++... .++||
T Consensus 210 ltW~dl~wlr~~~-~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrq-----l-d~~p~t~~~L~ei~~~~~-~~~~V 281 (366)
T PLN02979 210 LSWKDVQWLQTIT-KLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQ-----L-DYVPATISALEEVVKATQ-GRIPV 281 (366)
T ss_pred CCHHHHHHHHhcc-CCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCC-----C-CCchhHHHHHHHHHHHhC-CCCeE
Confidence 3468899999998 89999999999999999999999999999887742 2 355678999998877654 35999
Q ss_pred EecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccce
Q 010640 355 IADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGV 434 (505)
Q Consensus 355 Ia~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~ 434 (505)
|+||||+++.|++|||++||++|++|++|+...++ .|.
T Consensus 282 i~dGGIr~G~Di~KALALGAdaV~iGrp~L~~la~------------------------------------------~G~ 319 (366)
T PLN02979 282 FLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAA------------------------------------------EGE 319 (366)
T ss_pred EEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHh------------------------------------------cCH
Confidence 99999999999999999999999999999732111 121
Q ss_pred eeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhh
Q 010640 435 VGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLL 474 (505)
Q Consensus 435 ~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~ 474 (505)
+ ++...++.|..+|+.+|.++|++++.||.+..
T Consensus 320 ~-------Gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~ 352 (366)
T PLN02979 320 A-------GVRKVLQMLRDEFELTMALSGCRSLKEISRNH 352 (366)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHhCCCCHHHhChhh
Confidence 1 47899999999999999999999999998763
No 24
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.88 E-value=1.4e-21 Score=198.28 Aligned_cols=147 Identities=23% Similarity=0.276 Sum_probs=118.7
Q ss_pred hHHHHHHHHHHhCCCceEEEccc---CCHHHHHHHHHcCCCEEEEccCCcce----eec--------ccccccCcChHHH
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNV---VTMYQAQNLIEAGVDGLRVGMGSGSI----CTT--------QEVCAVGRGQATA 339 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V---~t~e~a~~l~~aGad~I~v~~g~g~~----~~~--------~~~~g~g~p~~~~ 339 (505)
.+++.++.+++.+ ++||++|.+ .+.+.++.+.++|+|+|++++++|.. +.. ..+.+|++|+..+
T Consensus 166 ~~le~i~~i~~~~-~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~ 244 (333)
T TIGR02151 166 GWLEKIAEICSQL-SVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAAS 244 (333)
T ss_pred HHHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHH
Confidence 4568899999987 799999766 68999999999999999998654431 111 2246789999998
Q ss_pred HHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccc
Q 010640 340 VYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQ 419 (505)
Q Consensus 340 l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~ 419 (505)
+.++++. ..++|||++|||+++.|++|+|++|||+|++|++|+... +
T Consensus 245 l~~~~~~--~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~-------------------------~------ 291 (333)
T TIGR02151 245 LLEVRSD--APDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKAA-------------------------L------ 291 (333)
T ss_pred HHHHHhc--CCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHH-------------------------H------
Confidence 8887651 246999999999999999999999999999999986321 0
Q ss_pred cccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 420 RYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 420 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
..|.+ .+.+.++.|..+||..|.++|++++.||++.
T Consensus 292 -----------~~g~~-------~v~~~i~~~~~eL~~~m~~~G~~~i~el~~~ 327 (333)
T TIGR02151 292 -----------DEGEE-------AVIEEIELIIEELKVAMFLTGAKTIAELKKV 327 (333)
T ss_pred -----------hcCHH-------HHHHHHHHHHHHHHHHHHHhCCCCHHHHccC
Confidence 01211 4779999999999999999999999999875
No 25
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=99.88 E-value=2.7e-21 Score=196.81 Aligned_cols=142 Identities=22% Similarity=0.295 Sum_probs=121.4
Q ss_pred hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcE
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPV 354 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipv 354 (505)
-.++.++++++.+ ++|+++|+|.+.++|+.+.++|+|+|+|+++||+. . +.+.|++.+|.++++... .++||
T Consensus 240 ~tW~~i~~lr~~~-~~pvivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~-----~-d~~~~t~~~L~ei~~~~~-~~~~v 311 (383)
T cd03332 240 LTWEDLAFLREWT-DLPIVLKGILHPDDARRAVEAGVDGVVVSNHGGRQ-----V-DGSIAALDALPEIVEAVG-DRLTV 311 (383)
T ss_pred CCHHHHHHHHHhc-CCCEEEecCCCHHHHHHHHHCCCCEEEEcCCCCcC-----C-CCCcCHHHHHHHHHHHhc-CCCeE
Confidence 3478899999998 89999999999999999999999999999887743 2 346899999999988764 25999
Q ss_pred EecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccce
Q 010640 355 IADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGV 434 (505)
Q Consensus 355 Ia~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~ 434 (505)
|+||||+++.|++|||++||++|++|++|+. |++. .|.
T Consensus 312 i~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~--------------------~l~~----------------------~G~ 349 (383)
T cd03332 312 LFDSGVRTGADIMKALALGAKAVLIGRPYAY--------------------GLAL----------------------GGE 349 (383)
T ss_pred EEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH--------------------HHHh----------------------ccH
Confidence 9999999999999999999999999999972 2210 111
Q ss_pred eeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 435 VGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 435 ~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
+ ++++.|+.|..+|+.+|.++|++++.||++.
T Consensus 350 ~-------gv~~~l~~l~~El~~~m~l~G~~~i~~l~~~ 381 (383)
T cd03332 350 D-------GVEHVLRNLLAELDLTMGLAGIRSIAELTRD 381 (383)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHCCCCHHHhCcc
Confidence 1 4789999999999999999999999999753
No 26
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.88 E-value=5.4e-21 Score=191.64 Aligned_cols=166 Identities=21% Similarity=0.308 Sum_probs=132.1
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCC--chhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeec
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGN--SSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTT 326 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~--~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~ 326 (505)
..+.++.+.+.|++++.++..+.. ....++.++++++.+ ++||++|++.+.++++.+.++|+|+|++++++|..
T Consensus 131 ~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~-~~pvivK~v~s~~~a~~a~~~G~d~I~v~~~gG~~--- 206 (299)
T cd02809 131 TEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQW-KGPLILKGILTPEDALRAVDAGADGIVVSNHGGRQ--- 206 (299)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhc-CCCEEEeecCCHHHHHHHHHCCCCEEEEcCCCCCC---
Confidence 344556666778998888664331 113467889999987 68999999999999999999999999998765531
Q ss_pred ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecc
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRG 406 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g 406 (505)
..++.|++.++.++++.... ++|||++|||+++.|++|+|++||++|++|++|+....+
T Consensus 207 ---~~~g~~~~~~l~~i~~~~~~-~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~~----------------- 265 (299)
T cd02809 207 ---LDGAPATIDALPEIVAAVGG-RIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAA----------------- 265 (299)
T ss_pred ---CCCCcCHHHHHHHHHHHhcC-CCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHHh-----------------
Confidence 23678899999888776532 599999999999999999999999999999998631100
Q ss_pred cCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHH
Q 010640 407 MGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAH 471 (505)
Q Consensus 407 ~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~ 471 (505)
.|.+ .+.++++.|..+|+..|.++|+++++||+
T Consensus 266 -------------------------~g~~-------~v~~~i~~l~~el~~~m~~~G~~~i~~l~ 298 (299)
T cd02809 266 -------------------------GGEA-------GVAHVLEILRDELERAMALLGCASLADLD 298 (299)
T ss_pred -------------------------cCHH-------HHHHHHHHHHHHHHHHHHHHCCCCHHHhC
Confidence 1111 47789999999999999999999999985
No 27
>PLN02535 glycolate oxidase
Probab=99.87 E-value=7.9e-21 Score=192.20 Aligned_cols=143 Identities=22% Similarity=0.308 Sum_probs=121.5
Q ss_pred hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcE
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPV 354 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipv 354 (505)
..++.++++++.+ ++||++|+|.++++|+.+.++|+|+|++++++|. . .+++.|++.++.++.+... .++||
T Consensus 210 ~tW~~i~~lr~~~-~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~GGr-----~-~d~~~~t~~~L~ev~~av~-~~ipV 281 (364)
T PLN02535 210 LSWKDIEWLRSIT-NLPILIKGVLTREDAIKAVEVGVAGIIVSNHGAR-----Q-LDYSPATISVLEEVVQAVG-GRVPV 281 (364)
T ss_pred CCHHHHHHHHhcc-CCCEEEecCCCHHHHHHHHhcCCCEEEEeCCCcC-----C-CCCChHHHHHHHHHHHHHh-cCCCE
Confidence 3578899999987 8999999999999999999999999999987763 2 3567888999998877553 25999
Q ss_pred EecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccce
Q 010640 355 IADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGV 434 (505)
Q Consensus 355 Ia~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~ 434 (505)
|++|||+++.|++|||++||++|++|++|+...++.+. +
T Consensus 282 i~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~~~g~---------------------------------------~-- 320 (364)
T PLN02535 282 LLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLAAKGE---------------------------------------D-- 320 (364)
T ss_pred EeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhhhccH---------------------------------------H--
Confidence 99999999999999999999999999999743221111 1
Q ss_pred eeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhh
Q 010640 435 VGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLL 474 (505)
Q Consensus 435 ~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~ 474 (505)
++.+.++.|..+|+.+|.++|+++++||+...
T Consensus 321 --------gv~~~l~~l~~el~~~m~l~G~~~i~el~~~~ 352 (364)
T PLN02535 321 --------GVRKVIEMLKDELEITMALSGCPSVKDITRSH 352 (364)
T ss_pred --------HHHHHHHHHHHHHHHHHHHhCCCCHHHhhhhh
Confidence 47789999999999999999999999998763
No 28
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=99.87 E-value=8.7e-21 Score=191.84 Aligned_cols=142 Identities=20% Similarity=0.288 Sum_probs=118.1
Q ss_pred hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcE
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPV 354 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipv 354 (505)
-.++.++++++.+ ++||++|+|.+.++|+.+.++|+|+|+|++|||. ++.+ +.+++.+|.++++... .++||
T Consensus 215 ~~w~~i~~l~~~~-~~PvivKGv~~~eda~~a~~~Gvd~I~VS~HGGr-----q~~~-~~a~~~~L~ei~~av~-~~i~v 286 (367)
T TIGR02708 215 LSPRDIEEIAGYS-GLPVYVKGPQCPEDADRALKAGASGIWVTNHGGR-----QLDG-GPAAFDSLQEVAEAVD-KRVPI 286 (367)
T ss_pred CCHHHHHHHHHhc-CCCEEEeCCCCHHHHHHHHHcCcCEEEECCcCcc-----CCCC-CCcHHHHHHHHHHHhC-CCCcE
Confidence 3467899999987 7999999999999999999999999999988873 3322 3456788888877643 35999
Q ss_pred EecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccce
Q 010640 355 IADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGV 434 (505)
Q Consensus 355 Ia~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~ 434 (505)
|+||||+++.|++|||++||++|++|++|+. |++ ..|.
T Consensus 287 i~dGGIr~g~Dv~KaLalGAd~V~igR~~l~--------------------~la----------------------~~G~ 324 (367)
T TIGR02708 287 VFDSGVRRGQHVFKALASGADLVALGRPVIY--------------------GLA----------------------LGGS 324 (367)
T ss_pred EeeCCcCCHHHHHHHHHcCCCEEEEcHHHHH--------------------HHH----------------------hcCH
Confidence 9999999999999999999999999999873 211 0122
Q ss_pred eeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 435 VGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 435 ~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
+ ++...++.|..+|+.+|+++||++++||++.
T Consensus 325 ~-------gv~~~l~~l~~El~~~M~l~G~~~i~eL~~~ 356 (367)
T TIGR02708 325 Q-------GARQVFEYLNKELKRVMQLTGTQTIEDVKGF 356 (367)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHhCCCCHHHhCcc
Confidence 2 4789999999999999999999999999875
No 29
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.86 E-value=1.7e-20 Score=189.34 Aligned_cols=137 Identities=22% Similarity=0.357 Sum_probs=115.5
Q ss_pred HHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEE
Q 010640 276 QIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVI 355 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvI 355 (505)
.++.++++++.+ +.|+++|+|.+.++++.+.++|+|+|+|+++||.. .. ...+++.++.++++.+ ++|||
T Consensus 224 ~w~~i~~ir~~~-~~pviiKgV~~~eda~~a~~~G~d~I~VSnhGGrq-----ld-~~~~~~~~L~ei~~~~---~~~vi 293 (361)
T cd04736 224 NWQDLRWLRDLW-PHKLLVKGIVTAEDAKRCIELGADGVILSNHGGRQ-----LD-DAIAPIEALAEIVAAT---YKPVL 293 (361)
T ss_pred CHHHHHHHHHhC-CCCEEEecCCCHHHHHHHHHCCcCEEEECCCCcCC-----Cc-CCccHHHHHHHHHHHh---CCeEE
Confidence 478899999998 78999999999999999999999999999887743 22 2356788888876653 59999
Q ss_pred ecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccccccccccccccee
Q 010640 356 ADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVV 435 (505)
Q Consensus 356 a~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~ 435 (505)
+||||+++.||+|||++||++|++|++|+. |.+. .|.+
T Consensus 294 ~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~--------------------~la~----------------------~G~~ 331 (361)
T cd04736 294 IDSGIRRGSDIVKALALGANAVLLGRATLY--------------------GLAA----------------------RGEA 331 (361)
T ss_pred EeCCCCCHHHHHHHHHcCCCEEEECHHHHH--------------------HHHh----------------------cCHH
Confidence 999999999999999999999999999962 2210 1211
Q ss_pred eeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHH
Q 010640 436 GAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAH 471 (505)
Q Consensus 436 ~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~ 471 (505)
++++.++.|..+|+.+|+++|++++.||.
T Consensus 332 -------gv~~~l~~l~~el~~~m~l~G~~~i~~l~ 360 (361)
T cd04736 332 -------GVSEVLRLLKEEIDRTLALIGCPDIASLT 360 (361)
T ss_pred -------HHHHHHHHHHHHHHHHHHHhCCCCHHHcC
Confidence 48899999999999999999999999984
No 30
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=99.86 E-value=2.3e-20 Score=177.75 Aligned_cols=142 Identities=24% Similarity=0.349 Sum_probs=121.6
Q ss_pred hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcE
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPV 354 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipv 354 (505)
-.|+.+++++... ++||++++|.+.++|+.+.++|+++|+|++|||+ +.+ ....++++|.|+.++... ++||
T Consensus 210 l~W~Di~wLr~~T-~LPIvvKGilt~eDA~~Ave~G~~GIIVSNHGgR-----QlD-~vpAtI~~L~Evv~aV~~-ri~V 281 (363)
T KOG0538|consen 210 LSWKDIKWLRSIT-KLPIVVKGVLTGEDARKAVEAGVAGIIVSNHGGR-----QLD-YVPATIEALPEVVKAVEG-RIPV 281 (363)
T ss_pred CChhhhHHHHhcC-cCCeEEEeecccHHHHHHHHhCCceEEEeCCCcc-----ccC-cccchHHHHHHHHHHhcC-ceEE
Confidence 4578889999987 8999999999999999999999999999998874 333 234578899999887753 6999
Q ss_pred EecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccce
Q 010640 355 IADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGV 434 (505)
Q Consensus 355 Ia~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~ 434 (505)
+.|||+++|.||.|||+|||.+|.+|++++ ||++. +|-
T Consensus 282 ~lDGGVR~G~DVlKALALGAk~VfiGRP~v--------------------~gLA~----------------------~Ge 319 (363)
T KOG0538|consen 282 FLDGGVRRGTDVLKALALGAKGVFIGRPIV--------------------WGLAA----------------------KGE 319 (363)
T ss_pred EEecCcccchHHHHHHhcccceEEecCchh--------------------eeecc----------------------ccc
Confidence 999999999999999999999999999986 34331 121
Q ss_pred eeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 435 VGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 435 ~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
.+|+++|+-|..++..+|.+.||+++.|+.+.
T Consensus 320 -------~GV~~vl~iL~~efe~tmaLsGc~sv~ei~~~ 351 (363)
T KOG0538|consen 320 -------AGVKKVLDILRDEFELTMALSGCRSVKEITRN 351 (363)
T ss_pred -------hhHHHHHHHHHHHHHHHHHHhCCCchhhhCcc
Confidence 15889999999999999999999999999875
No 31
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=99.86 E-value=2e-20 Score=190.15 Aligned_cols=141 Identities=18% Similarity=0.298 Sum_probs=119.1
Q ss_pred HHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEE
Q 010640 276 QIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVI 355 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvI 355 (505)
.++.++++++.+ ++|+++|+|.+.++|+.+.++|+|+|+|+++||... .+ ..+++.++.++++... .++|||
T Consensus 233 tW~di~~lr~~~-~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~-----d~-~~~t~~~L~~i~~a~~-~~~~vi 304 (381)
T PRK11197 233 SWKDLEWIRDFW-DGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQL-----DG-VLSSARALPAIADAVK-GDITIL 304 (381)
T ss_pred CHHHHHHHHHhC-CCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCC-----CC-cccHHHHHHHHHHHhc-CCCeEE
Confidence 468899999998 899999999999999999999999999998877522 21 3578888888876543 369999
Q ss_pred ecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccccccccccccccee
Q 010640 356 ADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVV 435 (505)
Q Consensus 356 a~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~ 435 (505)
+||||+++.||+|||++||++|++|++|+. +++. .|.+
T Consensus 305 ~dGGIr~g~Di~KALaLGA~~V~iGr~~l~--------------------~la~----------------------~G~~ 342 (381)
T PRK11197 305 ADSGIRNGLDVVRMIALGADTVLLGRAFVY--------------------ALAA----------------------AGQA 342 (381)
T ss_pred eeCCcCcHHHHHHHHHcCcCceeEhHHHHH--------------------HHHh----------------------ccHH
Confidence 999999999999999999999999999973 2110 1211
Q ss_pred eeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 436 GAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 436 ~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
++.+.++.|..+|+.+|.++||+++.||++.
T Consensus 343 -------gv~~~l~~l~~El~~~m~l~G~~~i~el~~~ 373 (381)
T PRK11197 343 -------GVANLLDLIEKEMRVAMTLTGAKSISEITRD 373 (381)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHCCCCHHHhCHh
Confidence 4889999999999999999999999999876
No 32
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=99.85 E-value=1.4e-20 Score=191.02 Aligned_cols=232 Identities=25% Similarity=0.324 Sum_probs=145.2
Q ss_pred eeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEc-CCCCHHHHHHHHHhhhccCCccccCCCeeEeCCC-CCHH
Q 010640 47 TRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVH-SNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPD-GCIN 124 (505)
Q Consensus 47 ~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~-~~~~~~~~~~~v~~v~~~~~~~~~~p~~~~v~~~-~tv~ 124 (505)
|++|+.+.+++||++++|..++.++|+.++++.||+|+|. ...+++...+.+++++...+ .|+.+++... ....
T Consensus 2 t~~t~~lgi~~PIiqapM~~is~~~LaaAVs~aGglG~l~~~~~~~~~l~~~i~~~~~~t~----~pfgvnl~~~~~~~~ 77 (330)
T PF03060_consen 2 TRLTELLGIKYPIIQAPMGGISTPELAAAVSNAGGLGFLGAGGLTPEQLREEIRKIRALTD----KPFGVNLFLPPPDPA 77 (330)
T ss_dssp -HHHHHHT-SSSEEE---TTTSSHHHHHHHHHTTSBEEEECTTSSHHHHHHHHHHHHHH-S----S-EEEEEETTSTTHH
T ss_pred ChHHHHhCCCcCEEcCCCCCCChHHHHHHHHhCCCEeeccccccChHHHHHHHHHHHhhcc----ccccccccccCcccc
Confidence 6788889999999999999999999999999999999997 45688888888888776553 3521211100 0000
Q ss_pred HHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEee
Q 010640 125 DANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEK 204 (505)
Q Consensus 125 ~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd 204 (505)
+..+ .+.+.+ -....+++.+.++
T Consensus 78 ~~~~------------------------------------~~~~~~--------------~~~~~~~~~~~~~------- 100 (330)
T PF03060_consen 78 DEED------------------------------------AWPKEL--------------GNAVLELCIEEGV------- 100 (330)
T ss_dssp HH-H------------------------------------HHHHHT--------------HHHHHHHHHHTT--------
T ss_pred hhhh------------------------------------hhhhhh--------------HHHHHHHHHHhCc-------
Confidence 0000 000000 0011112222111
Q ss_pred CCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHH
Q 010640 205 DGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAK 284 (505)
Q Consensus 205 ~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~ 284 (505)
.+.+.++.+++.+++++.+ +.|.+ ..+.++.++
T Consensus 101 -------------------------------------------~~~~~~~~~~~~~~~~v~~--~~G~p--~~~~i~~l~ 133 (330)
T PF03060_consen 101 -------------------------------------------PFEEQLDVALEAKPDVVSF--GFGLP--PPEVIERLH 133 (330)
T ss_dssp -------------------------------------------SHHHHHHHHHHS--SEEEE--ESSSC---HHHHHHHH
T ss_pred -------------------------------------------ccccccccccccceEEEEe--ecccc--hHHHHHHHH
Confidence 1567788889999999987 44444 135667777
Q ss_pred HhCCCceEEEcccCCHHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCH
Q 010640 285 KTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNS 363 (505)
Q Consensus 285 ~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~ 363 (505)
+. ++.++. .|.|.+.|+.+.++|+|+|++. ..+|++.. ... + ++...+.++++ ..++|||++|||.++
T Consensus 134 ~~--gi~v~~-~v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g-~~~---~-~~~~L~~~v~~---~~~iPViaAGGI~dg 202 (330)
T PF03060_consen 134 AA--GIKVIP-QVTSVREARKAAKAGADAIVAQGPEAGGHRG-FEV---G-STFSLLPQVRD---AVDIPVIAAGGIADG 202 (330)
T ss_dssp HT--T-EEEE-EESSHHHHHHHHHTT-SEEEEE-TTSSEE----SS---G--HHHHHHHHHH---H-SS-EEEESS--SH
T ss_pred Hc--CCcccc-ccCCHHHHHHhhhcCCCEEEEeccccCCCCC-ccc---c-ceeeHHHHHhh---hcCCcEEEecCcCCH
Confidence 76 777766 8999999999999999999985 44455443 111 1 45555555554 456999999999999
Q ss_pred HHHHHHHHhCCCEEEecccccCCCCCCccceeec
Q 010640 364 GHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQN 397 (505)
Q Consensus 364 ~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~ 397 (505)
.+++.||++||++|+|||+|+.|.||+.+..||+
T Consensus 203 ~~iaaal~lGA~gV~~GTrFl~t~Es~~~~~~K~ 236 (330)
T PF03060_consen 203 RGIAAALALGADGVQMGTRFLATEESGASDAYKQ 236 (330)
T ss_dssp HHHHHHHHCT-SEEEESHHHHTSTTS-S-HHHHH
T ss_pred HHHHHHHHcCCCEeecCCeEEecccccChHHHHH
Confidence 9999999999999999999999999999988764
No 33
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=99.83 E-value=8.7e-20 Score=184.39 Aligned_cols=142 Identities=23% Similarity=0.281 Sum_probs=123.1
Q ss_pred hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcE
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPV 354 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipv 354 (505)
-.++.+.++++.+ ..|++.++|.+++++..+...|+++|.+++|+| .+.+||+|++.+|.++..+... ++||
T Consensus 205 i~ked~~~i~~~~-~~~lv~kGV~~~~D~~~a~~tg~~~I~vsnhgg------rqlD~g~st~~~L~ei~~av~~-~~~v 276 (360)
T COG1304 205 ISKEDGAGISKEW-AGPLVLKGILAPEDAAGAGGTGADGIEVSNHGG------RQLDWGISTADSLPEIVEAVGD-RIEV 276 (360)
T ss_pred ccHHHHhHHHHhc-CCcHHHhCCCCHHHHHhhccCCceEEEEEcCCC------ccccCCCChHHHHHHHHHHhCC-CeEE
Confidence 3467788888887 889999999999999999999999999999877 3567999999999999887642 4999
Q ss_pred EecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccce
Q 010640 355 IADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGV 434 (505)
Q Consensus 355 Ia~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~ 434 (505)
|+||||++|.|++|||+|||++|++|++|+. +.+ ..|.
T Consensus 277 i~dGGiR~G~Dv~KAlALGA~~v~igrp~L~--------------------~l~----------------------~~g~ 314 (360)
T COG1304 277 IADGGIRSGLDVAKALALGADAVGIGRPFLY--------------------GLA----------------------AGGE 314 (360)
T ss_pred EecCCCCCHHHHHHHHHhCCchhhhhHHHHH--------------------HHH----------------------hccH
Confidence 9999999999999999999999999999972 111 1121
Q ss_pred eeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 435 VGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 435 ~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
+ +|.+.++.|..+|+.+|+++|++|++||++.
T Consensus 315 ~-------GV~~~le~~~~El~~~M~L~G~~~i~el~~~ 346 (360)
T COG1304 315 A-------GVERVLEIIRKELKIAMALTGAKNIEELKRV 346 (360)
T ss_pred H-------HHHHHHHHHHHHHHHHHHhcCCCcHHHhccC
Confidence 1 4889999999999999999999999999986
No 34
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.83 E-value=3.8e-19 Score=179.84 Aligned_cols=141 Identities=23% Similarity=0.305 Sum_probs=116.4
Q ss_pred HHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEE
Q 010640 276 QIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVI 355 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvI 355 (505)
.++.++++++.+ ++||++|++.++++|+.+.++|+|+|+|++|+|.. .. .+.+++..+.++.+... .++|||
T Consensus 209 ~~~~l~~lr~~~-~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhGGr~-----ld-~~~~~~~~l~~i~~a~~-~~i~vi 280 (351)
T cd04737 209 SPADIEFIAKIS-GLPVIVKGIQSPEDADVAINAGADGIWVSNHGGRQ-----LD-GGPASFDSLPEIAEAVN-HRVPII 280 (351)
T ss_pred CHHHHHHHHHHh-CCcEEEecCCCHHHHHHHHHcCCCEEEEeCCCCcc-----CC-CCchHHHHHHHHHHHhC-CCCeEE
Confidence 468889999987 79999999999999999999999999999887632 22 23456777887766543 259999
Q ss_pred ecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccccccccccccccee
Q 010640 356 ADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVV 435 (505)
Q Consensus 356 a~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~ 435 (505)
++|||+++.|++|||++||++|++|++|+. |++. .|-+
T Consensus 281 ~dGGIr~g~Di~kaLalGA~~V~iGr~~l~--------------------~la~----------------------~G~~ 318 (351)
T cd04737 281 FDSGVRRGEHVFKALASGADAVAVGRPVLY--------------------GLAL----------------------GGAQ 318 (351)
T ss_pred EECCCCCHHHHHHHHHcCCCEEEECHHHHH--------------------HHhh----------------------chHH
Confidence 999999999999999999999999999862 3321 1111
Q ss_pred eeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 436 GAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 436 ~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
++.+.++.|..+|+.+|.++|+++++||++.
T Consensus 319 -------gv~~~l~~l~~El~~~m~l~G~~~i~el~~~ 349 (351)
T cd04737 319 -------GVASVLEHLNKELKIVMQLAGTRTIEDVKRT 349 (351)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHCCCCHHHhCCC
Confidence 4789999999999999999999999999753
No 35
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.82 E-value=3.3e-19 Score=178.61 Aligned_cols=204 Identities=25% Similarity=0.306 Sum_probs=154.2
Q ss_pred eeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEc-CCCCHHHHHHHHHhhhccCCccccCCCeeEeCCCCCHHH
Q 010640 47 TRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVH-SNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCIND 125 (505)
Q Consensus 47 ~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~-~~~~~~~~~~~v~~v~~~~~~~~~~p~~~~v~~~~tv~~ 125 (505)
++||..+.+.+|+|++||..++..+|+.++++.||+|++. ...+++...+++++++...+ .| +.+
T Consensus 2 t~l~~~lgi~~Pii~apM~~~s~~~la~avs~aGglG~l~~~~~~~~~l~~~i~~~~~~t~----~p--fgv-------- 67 (307)
T TIGR03151 2 TRLCDLLGIEYPIFQGGMAWVATGSLAAAVSNAGGLGIIGAGNAPPDVVRKEIRKVKELTD----KP--FGV-------- 67 (307)
T ss_pred ChhhHHhCCCCCEEcCCCCCCCCHHHHHHHHhCCCcceeccccCCHHHHHHHHHHHHHhcC----CC--cEE--------
Confidence 5678888999999999999999999999999999999997 45577877777777665432 23 100
Q ss_pred HHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC
Q 010640 126 ANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD 205 (505)
Q Consensus 126 a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~ 205 (505)
++..
T Consensus 68 -------------------------------------------------n~~~--------------------------- 71 (307)
T TIGR03151 68 -------------------------------------------------NIML--------------------------- 71 (307)
T ss_pred -------------------------------------------------eeec---------------------------
Confidence 0000
Q ss_pred CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHH
Q 010640 206 GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKK 285 (505)
Q Consensus 206 g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~ 285 (505)
..+...+.++.+++.+++++.+ +.|.+. +.++++++
T Consensus 72 ---------------------------------------~~~~~~~~~~~~~~~~v~~v~~--~~g~p~---~~i~~lk~ 107 (307)
T TIGR03151 72 ---------------------------------------LSPFVDELVDLVIEEKVPVVTT--GAGNPG---KYIPRLKE 107 (307)
T ss_pred ---------------------------------------CCCCHHHHHHHHHhCCCCEEEE--cCCCcH---HHHHHHHH
Confidence 0011345677788899999987 345443 46777777
Q ss_pred hCCCceEEEcccCCHHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHH
Q 010640 286 TYPELDVIGGNVVTMYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSG 364 (505)
Q Consensus 286 ~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~ 364 (505)
. ++.++. .|.+.+.++.+.++|+|+|.+. ...|++.. ..+++..+.++.+ ..++|||++|||.++.
T Consensus 108 ~--g~~v~~-~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~g-------~~~~~~ll~~v~~---~~~iPviaaGGI~~~~ 174 (307)
T TIGR03151 108 N--GVKVIP-VVASVALAKRMEKAGADAVIAEGMESGGHIG-------ELTTMALVPQVVD---AVSIPVIAAGGIADGR 174 (307)
T ss_pred c--CCEEEE-EcCCHHHHHHHHHcCCCEEEEECcccCCCCC-------CCcHHHHHHHHHH---HhCCCEEEECCCCCHH
Confidence 6 677776 8899999999999999999884 22332221 1245555655544 4579999999999999
Q ss_pred HHHHHHHhCCCEEEecccccCCCCCCccceeec
Q 010640 365 HIVKALVLGASTVMMGSFLAGSTEAPGAYVYQN 397 (505)
Q Consensus 365 di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~ 397 (505)
|+++++++||++|++||+|+.|.||+.+..|++
T Consensus 175 ~~~~al~~GA~gV~iGt~f~~t~Es~~~~~~k~ 207 (307)
T TIGR03151 175 GMAAAFALGAEAVQMGTRFLCAKECNVHPNYKE 207 (307)
T ss_pred HHHHHHHcCCCEeecchHHhcccccCCCHHHHH
Confidence 999999999999999999999999999888764
No 36
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=99.78 E-value=1.6e-18 Score=174.91 Aligned_cols=136 Identities=28% Similarity=0.380 Sum_probs=101.6
Q ss_pred HHHHHHHHHHc-CccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEc-cCCcceeec
Q 010640 249 DKERLEHLVKA-GVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVG-MGSGSICTT 326 (505)
Q Consensus 249 ~~e~~~~liea-Gad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~-~g~g~~~~~ 326 (505)
..+..+.+++. ++.++.. +.|. ...+.++.++.. ++.++. .+.+...|+++.++|+|++++. .++|++..+
T Consensus 92 ~~~~~~~ii~~~~vpvv~~--~~g~--~~~~~i~~~~~~--g~~v~~-~v~~~~~A~~~~~~G~d~vI~~g~eAGGH~g~ 164 (336)
T COG2070 92 AEAGVDAIIEGAGVPVVST--SFGA--PPAEFVARLKAA--GIKVIH-SVITVREALKAERAGADAVIAQGAEAGGHRGG 164 (336)
T ss_pred hHHhhhhHHhcCCCCEEec--cCCC--CcHHHHHHHHHc--CCeEEE-EeCCHHHHHHHHhCCCCEEEecCCcCCCcCCC
Confidence 45666677776 8888866 4442 123455556564 666666 7899999999999999999885 444544332
Q ss_pred ccccccCcChHHHHHHHHHHHhhcC-CcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeec
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSG-VPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQN 397 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~-ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~ 397 (505)
.....++...+.++.+ .++ +|||++|||.+++++++||++||++|+|||+|+.|.||+++..||+
T Consensus 165 ---~~~~~~t~~Lv~ev~~---~~~~iPViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~t~Ea~a~~~~K~ 230 (336)
T COG2070 165 ---VDLEVSTFALVPEVVD---AVDGIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATKEADASDAYKQ 230 (336)
T ss_pred ---CCCCccHHHHHHHHHH---HhcCCCEEEecCccChHHHHHHHHhccHHHHhhhhhhcccccCCCHHHHH
Confidence 1122344555555554 455 9999999999999999999999999999999999999999988875
No 37
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=99.77 E-value=1.6e-17 Score=172.02 Aligned_cols=170 Identities=16% Similarity=0.135 Sum_probs=126.1
Q ss_pred hhHHHHHHHHHHhCCCceEEEcccC--CHHHHHHHHHcC-CCEEEEccCCcceeec--ccccccCcChHHHHHHHHHHHh
Q 010640 274 SFQIEMIKYAKKTYPELDVIGGNVV--TMYQAQNLIEAG-VDGLRVGMGSGSICTT--QEVCAVGRGQATAVYKVSSIAA 348 (505)
Q Consensus 274 ~~~~~~i~~l~~~~~~~~Vi~g~V~--t~e~a~~l~~aG-ad~I~v~~g~g~~~~~--~~~~g~g~p~~~~l~~v~~~~~ 348 (505)
..+.+.++++|+..++.||++|.+. +.+++..+.+.| +|+|.|++++|+.... .....||.|+..++.++.+++.
T Consensus 199 ~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~ 278 (392)
T cd02808 199 EDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALV 278 (392)
T ss_pred HHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHH
Confidence 4578899999999854899998776 466665555555 9999998654432222 2236789999999999988775
Q ss_pred hc----CCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccccc
Q 010640 349 QS----GVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGD 424 (505)
Q Consensus 349 ~~----~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~ 424 (505)
.. ++|||++|||+++.|++||+++|||+|++|++|+.+.+|.-.. .
T Consensus 279 ~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al~c~~~~------------------------------~ 328 (392)
T cd02808 279 KNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIALGCIQAR------------------------------K 328 (392)
T ss_pred HcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhcchHHHH------------------------------h
Confidence 43 5999999999999999999999999999999998766543110 1
Q ss_pred ccccccccceeeeecc----------CCchhhHHHHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 425 KAKLKIAQGVVGAVAD----------KGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 425 ~~~~~~~~g~~~~~~~----------~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
|+++.+|-|+....+. ...+.++++.|..+|+..|..+|++++++|.+.
T Consensus 329 c~~~~cP~Giat~~~~~~~~~~~~~~~~~v~~~~~~~~~el~~~m~~~G~~~~~~l~~~ 387 (392)
T cd02808 329 CHTNTCPVGVATQDPELRRRLDVEGKAERVANYLKSLAEELRELAAALGKRSLELLGRS 387 (392)
T ss_pred cCCCCCCcccccCChHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHhCCCChHHCCHH
Confidence 1222233333322210 115889999999999999999999999999765
No 38
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.75 E-value=3.4e-17 Score=167.85 Aligned_cols=105 Identities=21% Similarity=0.211 Sum_probs=82.4
Q ss_pred HHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcC-CCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhc-----
Q 010640 277 IEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAG-VDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQS----- 350 (505)
Q Consensus 277 ~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aG-ad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~----- 350 (505)
.+.++.+++. +..|.++|+.+.+.| +|.|++...+|++.. ..|++..+..+.+.+...
T Consensus 152 ~~~v~~L~~~---------G~it~~eA~~A~~~g~aD~Ivvq~EAGGH~g-------~~~~~~Llp~v~~l~d~v~~~~~ 215 (418)
T cd04742 152 ERILKKLLAE---------GKITEEQAELARRVPVADDITVEADSGGHTD-------NRPLSVLLPTIIRLRDELAARYG 215 (418)
T ss_pred HHHHHHHHHc---------CCCCHHHHHHHHhCCCCCEEEEcccCCCCCC-------CccHHhHHHHHHHHHHHHhhccc
Confidence 4556666665 334999999999999 599999855555431 135555566655544322
Q ss_pred ---CCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeec
Q 010640 351 ---GVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQN 397 (505)
Q Consensus 351 ---~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~ 397 (505)
++|||++|||.|+.+++.|+++||++|++||+|+.|.||+.+..+|+
T Consensus 216 ~~~~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~flat~Ea~~s~~~K~ 265 (418)
T cd04742 216 YRRPIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQCTVEAGTSDAVKD 265 (418)
T ss_pred cCCCceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHhCccccCCHHHHH
Confidence 59999999999999999999999999999999999999999988874
No 39
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.75 E-value=5.1e-17 Score=161.23 Aligned_cols=127 Identities=13% Similarity=0.124 Sum_probs=94.7
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEc-cCCcceeecc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVG-MGSGSICTTQ 327 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~-~g~g~~~~~~ 327 (505)
..+.++.+++.+++++.+ +.|.+. .++.+++. ++.++. .|.|...++.+.++|+|+|++. ..+|++..
T Consensus 71 ~~~~l~vi~e~~v~~V~~--~~G~P~----~~~~lk~~--Gi~v~~-~v~s~~~A~~a~~~GaD~vVaqG~EAGGH~G-- 139 (320)
T cd04743 71 RAAQLAVVRAIKPTFALI--AGGRPD----QARALEAI--GISTYL-HVPSPGLLKQFLENGARKFIFEGRECGGHVG-- 139 (320)
T ss_pred hHHHHHHHHhcCCcEEEE--cCCChH----HHHHHHHC--CCEEEE-EeCCHHHHHHHHHcCCCEEEEecCcCcCCCC--
Confidence 346777888899999877 345442 24667776 777775 7899999999999999999985 44444321
Q ss_pred cccccCcChHHHHHHHHHHHh-------hcCCcEEecCCCCCHHHHHHHHHhCC--------CEEEecccccCCCCCCc
Q 010640 328 EVCAVGRGQATAVYKVSSIAA-------QSGVPVIADGGISNSGHIVKALVLGA--------STVMMGSFLAGSTEAPG 391 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~-------~~~ipvIa~GGI~~~~di~kal~lGA--------~~V~~G~~f~~~~Es~~ 391 (505)
..+++..+.++..... ..++|||++|||.++.+++.++++|| ++|+|||+|+.|+||+.
T Consensus 140 -----~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~Es~~ 213 (320)
T cd04743 140 -----PRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAYLFTEEAVS 213 (320)
T ss_pred -----CCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHHhcchhhcC
Confidence 1233434444433332 12699999999999999999999999 89999999999999983
No 40
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=99.73 E-value=7.6e-17 Score=166.19 Aligned_cols=95 Identities=22% Similarity=0.211 Sum_probs=76.4
Q ss_pred ccCCHHHHHHHHHcCC-CEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhc--------CCcEEecCCCCCHHHH
Q 010640 296 NVVTMYQAQNLIEAGV-DGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQS--------GVPVIADGGISNSGHI 366 (505)
Q Consensus 296 ~V~t~e~a~~l~~aGa-d~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~--------~ipvIa~GGI~~~~di 366 (505)
++.|.++|..+.+.|+ |.|++...+|++.. ..|++..+..+.+.++.. .+|||++|||.|+.++
T Consensus 167 G~it~eEA~~a~~~g~aD~Ivve~EAGGHtg-------~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~v 239 (444)
T TIGR02814 167 GRITREEAELARRVPVADDICVEADSGGHTD-------NRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAA 239 (444)
T ss_pred CCCCHHHHHHHHhCCCCcEEEEeccCCCCCC-------CCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHH
Confidence 3449999999999994 99988755555431 235666666665433322 5899999999999999
Q ss_pred HHHHHhCCCEEEecccccCCCCCCccceeec
Q 010640 367 VKALVLGASTVMMGSFLAGSTEAPGAYVYQN 397 (505)
Q Consensus 367 ~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~ 397 (505)
+.||++||++|++||+|+.|.||+++..+|+
T Consensus 240 aAAlaLGAdgV~~GT~flat~Esgas~~~K~ 270 (444)
T TIGR02814 240 AAAFMLGADFIVTGSVNQCTVEAGTSDNVKK 270 (444)
T ss_pred HHHHHcCCcEEEeccHHHhCccccCCHHHHH
Confidence 9999999999999999999999999988874
No 41
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.62 E-value=1.6e-15 Score=147.43 Aligned_cols=171 Identities=15% Similarity=0.216 Sum_probs=142.0
Q ss_pred CCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHH-HHHHHcCCeeEEcCCCCHHHHHHHHH-h
Q 010640 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMA-AAMAALGGIGIVHSNCTAADQARLVV-S 100 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma-~al~~~Gg~g~i~~~~~~~~~~~~v~-~ 100 (505)
+|.-....|++|.+++...-+.+..+. .+|++++..|++|-..|. .|+++. .++ +
T Consensus 130 AL~~~~AVLvTGGF~~s~evi~lAne~------~lPvlstsYDTFTVAtmIN~Al~n~-----------------lIKkd 186 (432)
T COG4109 130 ALENGNAVLVTGGFDVSDEVIKLANEK------GLPVLSTSYDTFTVATMINKALSNQ-----------------LIKKD 186 (432)
T ss_pred HHhcCCeEEEeCCCCccHHHHHhhccc------CCceEEecccceeHHHHHHHHHHHh-----------------hhhhh
Confidence 566677889999988776555565553 489999999999977763 454421 111 2
Q ss_pred hhccCCccc--cCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCC
Q 010640 101 AKSRRVPIF--SSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSS 175 (505)
Q Consensus 101 v~~~~~~~~--~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~ 175 (505)
+..++|+|. .++ ..+.++++++++.++..+ ++ |||+|. ..+++|+||.+|+... .+++++..+|++ +
T Consensus 187 I~~Vedi~~P~~~~--~yL~~~d~v~d~~~l~~kt~~sRfPVvn~---~~kvvGvVt~rDv~~~-~~~t~ieKVMtk--n 258 (432)
T COG4109 187 IITVEDIMTPLEDT--SYLRETDTVEDWLDLVEKTGHSRFPVVNR---SMKVVGVVTMRDVLDK-KPSTTIEKVMTK--N 258 (432)
T ss_pred eeeHHHhccccccc--eeccccccHHHHHHHHHHcCCCccceecc---cceEEEEEEehhhhcC-CCCccHHHHhcc--C
Confidence 445666666 456 789999999999999999 87 999998 9999999999999643 457789999999 9
Q ss_pred ceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCC
Q 010640 176 NVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYP 224 (505)
Q Consensus 176 ~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~ 224 (505)
++++.+.+++..+.++|...+++.+||+|+ .+++|+|||+|++++++..
T Consensus 259 p~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~ 308 (432)
T COG4109 259 PITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMI 308 (432)
T ss_pred CeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHh
Confidence 999999999999999999999999999999 9999999999999998864
No 42
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.55 E-value=1e-14 Score=136.49 Aligned_cols=111 Identities=20% Similarity=0.317 Sum_probs=100.3
Q ss_pred cCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccc---ccccccccccccccCCCce
Q 010640 104 RRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWEN---LSDNKVKIFDYMRDCSSNV 177 (505)
Q Consensus 104 ~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~---~~~~~~~v~~im~~~~~~~ 177 (505)
+.+.|.+++ +++.+++|++++.+++.+ ++ .||+| +++++|++|..|+.. ....+.+|.++|++ +++
T Consensus 174 V~~~~s~~~--i~v~~d~tl~eaak~f~~~~i~GaPVvd----~dk~vGiit~~dI~~aia~g~~~~kV~~~M~k--~vi 245 (294)
T COG2524 174 VKNLMSKKL--ITVRPDDTLREAAKLFYEKGIRGAPVVD----DDKIVGIITLSDIAKAIANGNLDAKVSDYMRK--NVI 245 (294)
T ss_pred hhhhccCCc--eEecCCccHHHHHHHHHHcCccCCceec----CCceEEEEEHHHHHHHHHcCCccccHHHHhcc--CCc
Confidence 445788888 999999999999999999 87 99999 469999999999962 22457899999999 999
Q ss_pred EecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 178 SVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 178 ~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++.+++.+.+|+++|..+++.+|.|+|. |+++|+||++||+..+.
T Consensus 246 tI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 246 TINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred eEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 9999999999999999999999999997 99999999999998763
No 43
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.48 E-value=1.3e-12 Score=133.07 Aligned_cols=171 Identities=18% Similarity=0.202 Sum_probs=123.3
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCC--------Cc--hhHHHHHHHHHHhCCCceEEEcccC----CHHHHHHHHHcCC
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQG--------NS--SFQIEMIKYAKKTYPELDVIGGNVV----TMYQAQNLIEAGV 311 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g--------~~--~~~~~~i~~l~~~~~~~~Vi~g~V~----t~e~a~~l~~aGa 311 (505)
.+++.+.++.+.++|+|+++++.++. .. ..+.+.++.+++.. ++||+++... ..+.++.+.++|+
T Consensus 113 ~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~-~iPV~vKl~p~~~~~~~~a~~l~~~G~ 191 (334)
T PRK07565 113 AGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV-SIPVAVKLSPYFSNLANMAKRLDAAGA 191 (334)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc-CCcEEEEeCCCchhHHHHHHHHHHcCC
Confidence 34566777888888999999976541 11 13567778888876 7999998332 2466788899999
Q ss_pred CEEEEccCCcc--eee--cccccccCcChHH----HHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 312 DGLRVGMGSGS--ICT--TQEVCAVGRGQAT----AVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 312 d~I~v~~g~g~--~~~--~~~~~g~g~p~~~----~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
|+|.+.+.... ..+ .+...+||++... ++..+++..+..++|||+.|||.|+.|+.+++.+||++||+|+.+
T Consensus 192 dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~ 271 (334)
T PRK07565 192 DGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGVHDAEDVIKMLLAGADVVMIASAL 271 (334)
T ss_pred CeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHcCCCceeeehHH
Confidence 99988643211 111 1112345544322 344455555556799999999999999999999999999999987
Q ss_pred cCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccC
Q 010640 384 AGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLG 463 (505)
Q Consensus 384 ~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G 463 (505)
+. +| ..+++++..+|+..|...|
T Consensus 272 ~~----------------------------------------------~g-----------~~~~~~i~~~L~~~l~~~g 294 (334)
T PRK07565 272 LR----------------------------------------------HG-----------PDYIGTILRGLEDWMERHG 294 (334)
T ss_pred hh----------------------------------------------hC-----------cHHHHHHHHHHHHHHHHcC
Confidence 41 11 1567789999999999999
Q ss_pred CCCHHHHHHhh
Q 010640 464 ASSLQSAHDLL 474 (505)
Q Consensus 464 ~~~~~~l~~~~ 474 (505)
+++++||+..+
T Consensus 295 ~~~i~e~~g~~ 305 (334)
T PRK07565 295 YESLQQFRGSM 305 (334)
T ss_pred CCCHHHHhccc
Confidence 99999998764
No 44
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.43 E-value=6.4e-13 Score=112.95 Aligned_cols=100 Identities=15% Similarity=0.214 Sum_probs=89.0
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccc---cccccccccccCCCceEecCCCCHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSD---NKVKIFDYMRDCSSNVSVPANYDLGQI 188 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~---~~~~v~~im~~~~~~~~v~~~~~l~~a 188 (505)
++++++.++.++.+.|.+ +. +||+|+ +++++|+|+..|++.... ...++.++|.. ++.++.+++++.++
T Consensus 4 ~~v~~~~~l~~a~~~~~~~~~~~~~V~d~---~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a 78 (111)
T cd04603 4 VSVNCENPLREAIKMINELGARAVVVVDE---ENKVLGQVTLSDLLEIGPNDYETLKVCEVYIV--PVPIVYCDSKVTDL 78 (111)
T ss_pred EEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CCCEEEEEEHHHHHhhccccccccChhheeec--CCcEECCCCcHHHH
Confidence 789999999999999987 55 899987 899999999999874322 23579999988 88999999999999
Q ss_pred HHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 189 DEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 189 ~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
+++|.+++...+||+|+ |+++|+||++|+++
T Consensus 79 l~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 79 LRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred HHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 99999999999999998 99999999999875
No 45
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.43 E-value=3.9e-13 Score=128.09 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=100.7
Q ss_pred CccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc----------cccccccccccc
Q 010640 106 VPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS----------DNKVKIFDYMRD 172 (505)
Q Consensus 106 ~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~----------~~~~~v~~im~~ 172 (505)
++|.++. +++++++++.+|.+++.+ ++ +||+|+ +.+++||||.+|+.... ..+..++.+|++
T Consensus 249 dIMSrdV--vtv~~~ts~dhA~~ll~~H~ikaLPV~d~---~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~ 323 (382)
T COG3448 249 DIMSRDV--VTVSTDTSIDHARKLLQEHRIKALPVLDE---HRRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTT 323 (382)
T ss_pred HhcCccc--eecCCcCChHHHHHHHHHcCccccccccc---ccceeeeeeHHHHhhccCcchHHHhhccCCCcccccccC
Confidence 6888888 999999999999999999 87 999998 89999999999996211 246789999999
Q ss_pred CCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 173 CSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 173 ~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++.++.++++..+.+-.|.+.+.+.+||+|+ |+++||||.+|++.+..
T Consensus 324 --~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~ 372 (382)
T COG3448 324 --PVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALY 372 (382)
T ss_pred --cceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999999998753
No 46
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.41 E-value=1.1e-11 Score=125.78 Aligned_cols=171 Identities=18% Similarity=0.187 Sum_probs=122.4
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCC-CCc---------hhHHHHHHHHHHhCCCceEEEcccC----CHHHHHHHHHcCC
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQ-GNS---------SFQIEMIKYAKKTYPELDVIGGNVV----TMYQAQNLIEAGV 311 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~-g~~---------~~~~~~i~~l~~~~~~~~Vi~g~V~----t~e~a~~l~~aGa 311 (505)
.+++.+.++.+.+.|+|+++++.++ ... ..+.+.++.+++.. ++||++|-.. ..+.++.+.++|+
T Consensus 111 ~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~-~iPv~vKl~p~~~~~~~~a~~l~~~Ga 189 (325)
T cd04739 111 AGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV-TIPVAVKLSPFFSALAHMAKQLDAAGA 189 (325)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc-CCCEEEEcCCCccCHHHHHHHHHHcCC
Confidence 3446677777778899999998864 111 22457778888776 7899998332 2467788999999
Q ss_pred CEEEEccCCcc--eee--cccccccCc--ChH--HHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 312 DGLRVGMGSGS--ICT--TQEVCAVGR--GQA--TAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 312 d~I~v~~g~g~--~~~--~~~~~g~g~--p~~--~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
|+|.+.+.... ..+ .....++|. |.. .++..+++..+..++|||+.|||.|+.|+.+.+.+||++||+||.+
T Consensus 190 dgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~ 269 (325)
T cd04739 190 DGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMTTSAL 269 (325)
T ss_pred CeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhh
Confidence 99998753211 110 011122222 211 2444555555556899999999999999999999999999999987
Q ss_pred cCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccC
Q 010640 384 AGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLG 463 (505)
Q Consensus 384 ~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G 463 (505)
+. +| ..++.++..+|+..|...|
T Consensus 270 ~~----------------------------------------------~g-----------p~~~~~i~~~L~~~l~~~g 292 (325)
T cd04739 270 LR----------------------------------------------HG-----------PDYIGTLLAGLEAWMEEHG 292 (325)
T ss_pred hh----------------------------------------------cC-----------chHHHHHHHHHHHHHHHcC
Confidence 41 11 1467789999999999999
Q ss_pred CCCHHHHHHhh
Q 010640 464 ASSLQSAHDLL 474 (505)
Q Consensus 464 ~~~~~~l~~~~ 474 (505)
.++++|++..+
T Consensus 293 ~~~i~e~~G~~ 303 (325)
T cd04739 293 YESVQQLRGSM 303 (325)
T ss_pred CCCHHHHhccc
Confidence 99999998763
No 47
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.39 E-value=4.5e-11 Score=122.54 Aligned_cols=172 Identities=17% Similarity=0.206 Sum_probs=118.9
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCc--------------hhHHHHHHHHHHhCCCceEEEc---ccCCH-HHHHHH
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNS--------------SFQIEMIKYAKKTYPELDVIGG---NVVTM-YQAQNL 306 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~--------------~~~~~~i~~l~~~~~~~~Vi~g---~V~t~-e~a~~l 306 (505)
..+++.+.++.+.+.|+|+++++.++.+. ..+.+.++++++.. ++||++| ++.+. +.++.+
T Consensus 125 s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~-~iPv~vKLsPn~t~i~~ia~aa 203 (385)
T PLN02495 125 NKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKA-TVPVWAKMTPNITDITQPARVA 203 (385)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhh-cCceEEEeCCChhhHHHHHHHH
Confidence 34667788888888899999998865432 12344446666665 7899997 33333 456778
Q ss_pred HHcCCCEEEEccCCcc---e--eecc---------cccccCcChHH--HHHHHHHHHhhc------CCcEEecCCCCCHH
Q 010640 307 IEAGVDGLRVGMGSGS---I--CTTQ---------EVCAVGRGQAT--AVYKVSSIAAQS------GVPVIADGGISNSG 364 (505)
Q Consensus 307 ~~aGad~I~v~~g~g~---~--~~~~---------~~~g~g~p~~~--~l~~v~~~~~~~------~ipvIa~GGI~~~~ 364 (505)
.++|+|+|.+.+.-.. + ...+ ...|...|.+. ++..+++.++.. ++|||+.|||.++.
T Consensus 204 ~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~ 283 (385)
T PLN02495 204 LKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGG 283 (385)
T ss_pred HHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHH
Confidence 8999999988643211 1 1100 11112223333 333333433332 48999999999999
Q ss_pred HHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCch
Q 010640 365 HIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSV 444 (505)
Q Consensus 365 di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 444 (505)
|+++.+.+||++||++|.+.. +|.
T Consensus 284 Da~e~i~aGAs~VQv~Ta~~~----------------------------------------------~Gp---------- 307 (385)
T PLN02495 284 DAAEFILLGADTVQVCTGVMM----------------------------------------------HGY---------- 307 (385)
T ss_pred HHHHHHHhCCCceeEeeeeee----------------------------------------------cCc----------
Confidence 999999999999999998731 121
Q ss_pred hhHHHHHHHHHHHHhhccCCCCHHHHHHhh
Q 010640 445 LKFIPYTMQAVKQGFQDLGASSLQSAHDLL 474 (505)
Q Consensus 445 ~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~ 474 (505)
.+++++..+|+..|..-|.++++|++...
T Consensus 308 -~vi~~i~~~L~~~m~~~G~~si~e~~G~~ 336 (385)
T PLN02495 308 -PLVKNLCAELQDFMKKHNFSSIEDFRGAS 336 (385)
T ss_pred -HHHHHHHHHHHHHHHHcCCCCHHHHhCcC
Confidence 56778999999999999999999998764
No 48
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.37 E-value=2.1e-12 Score=110.24 Aligned_cols=100 Identities=16% Similarity=0.225 Sum_probs=88.9
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccc-c-----cccccccccccccCCCceEecCCCCH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWEN-L-----SDNKVKIFDYMRDCSSNVSVPANYDL 185 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~-~-----~~~~~~v~~im~~~~~~~~v~~~~~l 185 (505)
.++++++++.++.+.|.+ ++ +||+|+ +|+++|+||.+|+.. . .....++.++|.+ +++++.+++++
T Consensus 4 ~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l 78 (114)
T cd04619 4 AKIDVNATLQRAAKILGEPGIDLVVVCDP---HGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTR--AVVSCRPGDLL 78 (114)
T ss_pred EEECCCCcHHHHHHHHHhcCCCEEEEECC---CCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcC--CCeeECCCCCH
Confidence 678999999999999987 65 899987 899999999999862 1 1234679999988 99999999999
Q ss_pred HHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 186 GQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 186 ~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
.++++.|.+++.+.+||+|+ |+++|+||++|+++
T Consensus 79 ~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 79 HDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred HHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 99999999999999999998 99999999999875
No 49
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=4.4e-12 Score=108.09 Aligned_cols=101 Identities=17% Similarity=0.262 Sum_probs=88.8
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCC-CeEEEEEeccccccc------cccccccccccccCCCceEecCCCC
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRR-SRILGYVTKSDWENL------SDNKVKIFDYMRDCSSNVSVPANYD 184 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~-g~lvGivt~~Dl~~~------~~~~~~v~~im~~~~~~~~v~~~~~ 184 (505)
++++++.++.++++.|.+ ++ +||+++ + ++++|++|.+|++.. .....++.++|.+ ++++++++++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~ 78 (114)
T cd04630 4 VTIDGLATVAEALQLMKEHGVSSLVVEKR---RESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTK--PLISVSPDMD 78 (114)
T ss_pred EEECCCCcHHHHHHHHHHcCCCEEEEEEC---CCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcC--CCeeECCCCC
Confidence 789999999999999987 65 899986 6 899999999998631 1123578899987 8999999999
Q ss_pred HHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhh
Q 010640 185 LGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERL 220 (505)
Q Consensus 185 l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~ 220 (505)
+.++++.|.+.+...+||+|+|+++|+||+.|++++
T Consensus 79 l~~~~~~~~~~~~~~~~Vvd~~~~~Gvi~~~dl~~~ 114 (114)
T cd04630 79 IKYCARLMERTNIRRAPVVENNELIGIISLTDIFLA 114 (114)
T ss_pred HHHHHHHHHHcCCCEeeEeeCCEEEEEEEHHHhhcC
Confidence 999999999999999999988999999999998763
No 50
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=99.35 E-value=6.3e-12 Score=127.35 Aligned_cols=177 Identities=18% Similarity=0.204 Sum_probs=109.1
Q ss_pred cCccEEEEeCCCC--CchhHHHHHHHHHHhCCCceEEEcccC--CHHHHHH-HHHcCCCEEEEccCCcc--eeecccccc
Q 010640 259 AGVNVVVLDSSQG--NSSFQIEMIKYAKKTYPELDVIGGNVV--TMYQAQN-LIEAGVDGLRVGMGSGS--ICTTQEVCA 331 (505)
Q Consensus 259 aGad~I~i~~~~g--~~~~~~~~i~~l~~~~~~~~Vi~g~V~--t~e~a~~-l~~aGad~I~v~~g~g~--~~~~~~~~g 331 (505)
.|.+++.-...++ ..+.+.+.+.++|+..+..||.+|-+. ..++... +.++|+|+|.+..+.|+ .........
T Consensus 171 ~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~ 250 (368)
T PF01645_consen 171 PGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDH 250 (368)
T ss_dssp TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHH
T ss_pred CCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhh
Confidence 4666664322222 236788999999999888999887553 3343333 78899999999643332 333334677
Q ss_pred cCcChHHHHHHHHHHHhhc----CCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeeccc
Q 010640 332 VGRGQATAVYKVSSIAAQS----GVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGM 407 (505)
Q Consensus 332 ~g~p~~~~l~~v~~~~~~~----~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~ 407 (505)
+|.|+..++.++.+.+.+. ++.+|++||++++.|++||++||||+|.+|+.++.+..|--
T Consensus 251 ~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~liAlGC~~---------------- 314 (368)
T PF01645_consen 251 VGLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTAALIALGCIQ---------------- 314 (368)
T ss_dssp C---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHHHHCT--S----------------
T ss_pred CCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecchhhhhcchHH----------------
Confidence 8999999999999887654 38999999999999999999999999999999865433321
Q ss_pred CcHHHHhccccccccccccccccccceeeeecc----------CCchhhHHHHHHHHHHHHhhccCCC
Q 010640 408 GSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVAD----------KGSVLKFIPYTMQAVKQGFQDLGAS 465 (505)
Q Consensus 408 ~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----------~~~~~~~~~~l~~~l~~~m~~~G~~ 465 (505)
+..|+++.+|-|+..+.|. ...+.+++..+..+++..|..+|.+
T Consensus 315 --------------~~~C~~~~CP~Giatq~~~l~~~l~~~~~~~~v~n~~~~~~~el~~~~~a~G~~ 368 (368)
T PF01645_consen 315 --------------CRKCHTGTCPVGIATQDPKLRKRLDVEEKAERVANFLKACAEELREILAALGKR 368 (368)
T ss_dssp -----------------CCCT--TTSSS---CCHH--CT----HHHHHHHHHHHHHHHHHHHHHHT-S
T ss_pred --------------HhcccCCCCCceeeecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1122333444444433320 1257889999999999999998853
No 51
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.34 E-value=2.8e-12 Score=130.58 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=96.0
Q ss_pred ccCCcccc--CCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc----c-ccccccccccc
Q 010640 103 SRRVPIFS--SSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS----D-NKVKIFDYMRD 172 (505)
Q Consensus 103 ~~~~~~~~--~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~----~-~~~~v~~im~~ 172 (505)
+..++|.+ ++ +++++++|+.++.+.|.+ ++ +||+|+ +|+++|+||.+|++... . .+.++.++|++
T Consensus 203 ~V~dim~~~~~~--~~v~~~~sl~~a~~~~~~~~~~~~vVvd~---~g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~ 277 (326)
T PRK10892 203 RVSDIMHTGDEI--PHVSKTASLRDALLEITRKNLGMTVICDD---NMKIEGIFTDGDLRRVFDMGIDLRQASIADVMTP 277 (326)
T ss_pred cHHHHhCCCCCC--eEECCCCCHHHHHHHHHhcCCCeEEEEcC---CCcEEEEEecHHHHHHHhcCCCcccCCHHHhcCC
Confidence 34456776 67 899999999999999987 66 666787 89999999999986321 1 24679999998
Q ss_pred CCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhh
Q 010640 173 CSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERL 220 (505)
Q Consensus 173 ~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~ 220 (505)
+++++.+++++.++++.|.+++++++||+|+|+++|+||++|++++
T Consensus 278 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~lvGiit~~dil~~ 323 (326)
T PRK10892 278 --GGIRVRPGILAVDALNLMQSRHITSVLVADGDHLLGVLHMHDLLRA 323 (326)
T ss_pred --CCEEECCCCCHHHHHHHHHHCCCcEEEEeeCCEEEEEEEhHHhHhc
Confidence 9999999999999999999999999999988999999999999875
No 52
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.33 E-value=6.1e-12 Score=105.80 Aligned_cols=100 Identities=18% Similarity=0.302 Sum_probs=89.6
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEV 191 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~ 191 (505)
..++++.++.++++.|.+ ++ +||+++ +++++|+++.+|++.......++.++|.+ ++.++.+++++.++++.
T Consensus 5 ~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~~~~G~v~~~dl~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~ 79 (109)
T cd04583 5 VTITPDRTLAEAIKLMRDKKVDSLLVVDK---DNKLLGIVSLESLEQAYKEAKSLEDIMLE--DVFTVQPDASLRDVLGL 79 (109)
T ss_pred EEECCCCCHHHHHHHHHHCCCceEEEEcC---CCcEEEEEEHHHHHHHhhcCCcHhHhhcC--CceEECCCCcHHHHHHH
Confidence 789999999999999987 65 899997 79999999999986443334678899988 89999999999999999
Q ss_pred HHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 192 LEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 192 l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
|.+.+...+||+++ |+++|++|++|+++
T Consensus 80 ~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 80 VLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred HHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 99999999999998 99999999999875
No 53
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.33 E-value=1e-10 Score=113.51 Aligned_cols=132 Identities=30% Similarity=0.378 Sum_probs=95.3
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEc-cCCcceeecc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVG-MGSGSICTTQ 327 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~-~g~g~~~~~~ 327 (505)
..+.++.+.+.|++.+.+... .+ .+.++.+++. +++++. .+.+.+.++.+.+.|+|+|.+. .+.++.....
T Consensus 69 ~~~~~~~~~~~g~d~v~l~~~--~~---~~~~~~~~~~--~i~~i~-~v~~~~~~~~~~~~gad~i~~~~~~~~G~~~~~ 140 (236)
T cd04730 69 FEALLEVALEEGVPVVSFSFG--PP---AEVVERLKAA--GIKVIP-TVTSVEEARKAEAAGADALVAQGAEAGGHRGTF 140 (236)
T ss_pred HHHHHHHHHhCCCCEEEEcCC--CC---HHHHHHHHHc--CCEEEE-eCCCHHHHHHHHHcCCCEEEEeCcCCCCCCCcc
Confidence 557788888899999988432 22 3455555554 577766 4678888999999999999773 2211111110
Q ss_pred cccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceee
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQ 396 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~ 396 (505)
..+..+.+.++++ ..++||++.|||.++.|+.+++.+||++|++|+.|+.+.|++....++
T Consensus 141 -----~~~~~~~i~~i~~---~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~e~~~~~~~~ 201 (236)
T cd04730 141 -----DIGTFALVPEVRD---AVDIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEESGASPAYK 201 (236)
T ss_pred -----ccCHHHHHHHHHH---HhCCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCcccCCCHHHH
Confidence 0133445554443 346999999999999999999999999999999999999999776554
No 54
>COG0516 GuaB IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=99.32 E-value=2.6e-13 Score=124.68 Aligned_cols=79 Identities=39% Similarity=0.556 Sum_probs=72.9
Q ss_pred CCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhh
Q 010640 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSA 101 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v 101 (505)
+||||||.|+|+++++.|++++++|.++.++++.+|+++|+||++++.+|+++|++.||+|++|++++++++..++.++
T Consensus 14 ~ltfddVll~p~~s~v~p~~~~vkt~i~~~i~l~iP~vSA~MDtVtea~mAi~ma~~GGIGVih~nm~~~e~~~~v~~v 92 (170)
T COG0516 14 GLTFDDVLLLPAASDVAPAGVDVKTGLGPGIGVNIPQVSAAMDTVTEARMAIAMARDGGIGVMHGNMLAEESPGEYLYQ 92 (170)
T ss_pred CceeccCcchhhHHhhccCCCeeEecccCCcccCchHHHHHHHHHHHHHHhHHHHHcCCeEEEeccccHhhCCCceEEE
Confidence 6999999999999999999999999999999999999999999999999999999999999999999996665444433
No 55
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.32 E-value=8e-12 Score=107.88 Aligned_cols=101 Identities=19% Similarity=0.246 Sum_probs=88.9
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc-c--------------cccccccccccCCCc
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS-D--------------NKVKIFDYMRDCSSN 176 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~-~--------------~~~~v~~im~~~~~~ 176 (505)
++++++.++.++.+.|.+ ++ +||+++ +|+++|+|+.+|+.... . ...++.++|.+ ++
T Consensus 5 ~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~ 79 (124)
T cd04600 5 VTVTPDTSLEEAWALLRRHRIKALPVVDG---DRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSP--PV 79 (124)
T ss_pred EEeCCCCCHHHHHHHHHHcCCceeeEECC---CCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccC--CC
Confidence 789999999999999988 66 999987 79999999999985221 1 13368899988 99
Q ss_pred eEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhh
Q 010640 177 VSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERL 220 (505)
Q Consensus 177 ~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~ 220 (505)
+++++++++.++++.|.+.+.+.+||+|+ |+++|+||+.|++.+
T Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~~ 124 (124)
T cd04600 80 VTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIAA 124 (124)
T ss_pred eeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhcC
Confidence 99999999999999999999999999997 999999999999863
No 56
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.31 E-value=1.1e-11 Score=105.80 Aligned_cols=103 Identities=27% Similarity=0.446 Sum_probs=87.2
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecC--CCCHHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPA--NYDLGQID 189 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~--~~~l~~a~ 189 (505)
+++++++++.++.+.|.+ ++ +||+|++..+++++|+++.+|++.......++.++|.+ +..++.. ++++.+++
T Consensus 5 ~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~~~~~v~~~~~~--~~~~~~~~~~~~l~~~l 82 (114)
T cd04602 5 SVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTDSETPLSEVMTP--REVLVVAPTGITLEEAN 82 (114)
T ss_pred eEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhccCCCHHHhcCC--CceEEECCCCCCHHHHH
Confidence 788999999999999987 65 89988421148999999999987543334568999987 6777766 99999999
Q ss_pred HHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 190 EVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 190 ~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
+.|.+++...+||+|+ |+++|+||++|+++
T Consensus 83 ~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 83 EILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred HHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 9999999999999998 99999999999875
No 57
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.31 E-value=1.1e-11 Score=103.20 Aligned_cols=89 Identities=17% Similarity=0.152 Sum_probs=78.0
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEV 191 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~ 191 (505)
+++++++++.++.+.|.+ ++ +||+|++ +++++|+||.+|+... + .+.++.+++++.+++++
T Consensus 4 ~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~--~~~~~Givt~~Dl~~~----------~----~~~~v~~~~~l~~a~~~ 67 (98)
T cd04618 4 VVFDTKLPVKKAFNALVENGIRSAPLWDSR--KQQFVGMLTITDFILI----------L----RLVSIHPERSLFDAALL 67 (98)
T ss_pred EEECCCCcHHHHHHHHHHcCCceEEEEeCC--CCEEEEEEEHHHHhhh----------e----eeEEeCCCCcHHHHHHH
Confidence 789999999999999988 65 9999861 3899999999998521 1 16789999999999999
Q ss_pred HHHCCCCeeEEeeC--CeeeeEEeechhhh
Q 010640 192 LEKNDVDFVVLEKD--GERLDVVTREDVER 219 (505)
Q Consensus 192 l~~~~i~~lpVvd~--g~l~GiIt~~dil~ 219 (505)
|.+++++++||+|+ |+++|+||.+|++.
T Consensus 68 m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 68 LLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred HHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 99999999999985 79999999999875
No 58
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.30 E-value=1.7e-10 Score=115.91 Aligned_cols=168 Identities=23% Similarity=0.229 Sum_probs=118.1
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCC-----------chhHHHHHHHHHHhCCCceEEEcccC----CHHHHHHHHHcC
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGN-----------SSFQIEMIKYAKKTYPELDVIGGNVV----TMYQAQNLIEAG 310 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~-----------~~~~~~~i~~l~~~~~~~~Vi~g~V~----t~e~a~~l~~aG 310 (505)
.+++.+.++.+.++|+|.++++.++.+ .....+.++.+++.. ++||.+|--. ..+.++.+.++|
T Consensus 101 ~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~-~~Pv~vKl~~~~~~~~~~a~~~~~~G 179 (296)
T cd04740 101 VEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT-DVPVIVKLTPNVTDIVEIARAAEEAG 179 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc-CCCEEEEeCCCchhHHHHHHHHHHcC
Confidence 456777788888889999999865422 234567788888876 7899886221 235578889999
Q ss_pred CCEEEEccCCcc--eee-c------ccccccCcCh--HHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 311 VDGLRVGMGSGS--ICT-T------QEVCAVGRGQ--ATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 311 ad~I~v~~g~g~--~~~-~------~~~~g~g~p~--~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
+|+|.+.+...+ +.. + ....++..|. ...+..+.+..+..++|||+.|||.++.|+.+++.+|||+|++
T Consensus 180 ~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~i 259 (296)
T cd04740 180 ADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQV 259 (296)
T ss_pred CCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 999987532111 000 0 0011111121 1234444555555689999999999999999999999999999
Q ss_pred cccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHh
Q 010640 380 GSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGF 459 (505)
Q Consensus 380 G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m 459 (505)
|+.++. | -.+++++..+|...|
T Consensus 260 gra~l~-----------------------------------------------~-----------p~~~~~i~~~l~~~~ 281 (296)
T cd04740 260 GTANFV-----------------------------------------------D-----------PEAFKEIIEGLEAYL 281 (296)
T ss_pred chhhhc-----------------------------------------------C-----------hHHHHHHHHHHHHHH
Confidence 998752 0 045678999999999
Q ss_pred hccCCCCHHHHHH
Q 010640 460 QDLGASSLQSAHD 472 (505)
Q Consensus 460 ~~~G~~~~~~l~~ 472 (505)
...|..+++|++.
T Consensus 282 ~~~g~~~~~~~~g 294 (296)
T cd04740 282 DEEGIKSIEELVG 294 (296)
T ss_pred HHcCCCCHHHHhC
Confidence 9999999999975
No 59
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=1.5e-11 Score=104.50 Aligned_cols=100 Identities=18% Similarity=0.269 Sum_probs=88.1
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc----cccccccccccccCCCceEecCCCCHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL----SDNKVKIFDYMRDCSSNVSVPANYDLGQ 187 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~----~~~~~~v~~im~~~~~~~~v~~~~~l~~ 187 (505)
++++++.++.++++.|.+ ++ +||+++ +++++|++|.+|+... .....++.++|.+ ++.++++++++.+
T Consensus 5 ~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~ 79 (113)
T cd04607 5 LLVSPDASILDALRKIDKNALRIVLVVDE---NGRLLGTVTDGDIRRALLKGLSLDDPVSEVMNR--NPITAKVGSSREE 79 (113)
T ss_pred eEECCCCCHHHHHHHHHhcCcCEEEEECC---CCCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcC--CCEEEcCCCCHHH
Confidence 789999999999999987 65 888887 8999999999998521 1224578999988 8999999999999
Q ss_pred HHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 188 IDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 188 a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
+++.|.+++...+||+|+ |+++|+||++|++.
T Consensus 80 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 80 ILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred HHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 999999999999999998 99999999999875
No 60
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=1.5e-11 Score=104.72 Aligned_cols=102 Identities=16% Similarity=0.249 Sum_probs=87.4
Q ss_pred eEeCCCCCHHHHHHHhcC-C-e--EEEEeCCCCCCeEEEEEeccccccccc---cccccccccccCCCceEecCCCCHHH
Q 010640 115 VFKAPDGCINDANDFDGS-N-Y--VFVTESGTRRSRILGYVTKSDWENLSD---NKVKIFDYMRDCSSNVSVPANYDLGQ 187 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~-~--~pVvd~~~~~g~lvGivt~~Dl~~~~~---~~~~v~~im~~~~~~~~v~~~~~l~~ 187 (505)
.++++++++.++.+.|.+ + + +||+|+ +++++|+|+.+|+..... ...++.++|.+..++.++.+++++.+
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~---~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~ 80 (114)
T cd04801 4 PTVPAHLTLREFVREYVLGSNQRRFVVVDN---EGRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLAE 80 (114)
T ss_pred ceeCCCCCHHHHHHHHhccCCceeEEEEcC---CCcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHHH
Confidence 678999999999998865 4 5 899987 899999999999863321 24578899975334679999999999
Q ss_pred HHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 188 IDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 188 a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
+++.|.+++..++||+|+ |+++|++|.+|+++
T Consensus 81 a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 81 VLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred HHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 999999999999999998 99999999999875
No 61
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=1.6e-11 Score=103.58 Aligned_cols=99 Identities=15% Similarity=0.316 Sum_probs=89.2
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEV 191 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~ 191 (505)
.++++++++.++.+.|.+ ++ +||+|+ +++++|+|+.+|+... ....++.++|.+ ++.++++++++.++++.
T Consensus 5 ~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~~~~G~v~~~~l~~~-~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~ 78 (108)
T cd04596 5 GYLTTTDTVKDWHELNKETGHSRFPVVDE---KNKVVGIVTSKDVAGK-DPDTTIEKVMTK--NPITVNPKTSVASVAHM 78 (108)
T ss_pred EEeCCCCCHHHHHHHHHHcCCCceeEECC---CCeEEEEecHHHHhcc-cccccHHHHhcC--CCeEECCCCCHHHHHHH
Confidence 789999999999999987 65 999997 8999999999998643 234579999988 89999999999999999
Q ss_pred HHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 192 LEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 192 l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
|.+++...+||+|+ |+++|++|+.|+++
T Consensus 79 ~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 79 MIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred HHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 99999999999998 99999999999875
No 62
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.29 E-value=2.4e-11 Score=102.32 Aligned_cols=100 Identities=19% Similarity=0.324 Sum_probs=88.0
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecC-CCCHHHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPA-NYDLGQIDE 190 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~-~~~l~~a~~ 190 (505)
+.++++.++.++.+.|.+ ++ +||+|+ +++++|+++.+|++.......++.++|.. .+..+.. ++++.++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~~~~G~v~~~~l~~~~~~~~~v~~~~~~--~~~~~~~~~~~l~~~~~ 79 (110)
T cd04601 5 ITVSPDATVAEALELMAEYGISGLPVVDD---DGKLVGIVTNRDLRFETDLDKPVSEVMTP--ENLLTTVEGTSLEEALE 79 (110)
T ss_pred eEeCCCCcHHHHHHHHHHcCCceEEEEcC---CCEEEEEEEhhHeeecccCCCCHHHhccc--CceEEecCCCCHHHHHH
Confidence 789999999999999987 65 899997 79999999999987544445688999976 6666677 999999999
Q ss_pred HHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 191 VLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 191 ~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
.|.+.+.+.+||+|+ |+++|+||++|+++
T Consensus 80 ~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 80 LLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred HHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 999999999999998 99999999999875
No 63
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=1.6e-11 Score=105.75 Aligned_cols=100 Identities=13% Similarity=0.144 Sum_probs=83.3
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc--c-cc---ccccc------ccccCCCceEe
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS--D-NK---VKIFD------YMRDCSSNVSV 179 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~--~-~~---~~v~~------im~~~~~~~~v 179 (505)
+++++++++.++++.|.+ ++ +||+++ +++++|+++.+|+.... . .. .++.+ .|.. ++.++
T Consensus 4 ~~i~~~~~l~~a~~~~~~~~~~~~pVv~~---~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v 78 (120)
T cd04641 4 ATARPDTPLIDVLDMLVERRVSALPIVDE---NGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFE--GVRTC 78 (120)
T ss_pred EEEcCCCCHHHHHHHHHHcCCCeeeEECC---CCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCC--CCeEE
Confidence 789999999999999987 65 999987 89999999999986321 1 11 11222 3334 67899
Q ss_pred cCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 180 PANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 180 ~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
++++++.++++.|.+++.+.+||+|+ |+++|+||++|+++
T Consensus 79 ~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 79 SPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred cCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 99999999999999999999999998 99999999999875
No 64
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.28 E-value=8.7e-12 Score=126.67 Aligned_cols=110 Identities=14% Similarity=0.100 Sum_probs=96.0
Q ss_pred cCCccccC--CCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc--c--ccccccccccccCC
Q 010640 104 RRVPIFSS--SLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL--S--DNKVKIFDYMRDCS 174 (505)
Q Consensus 104 ~~~~~~~~--p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~--~--~~~~~v~~im~~~~ 174 (505)
+.++|.++ + +++++++++.++.+.|.+ +. +||+|+ +|+++|+||.+|++.. . ..+.++.++|++
T Consensus 199 V~~im~~~~~~--~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~---~g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~-- 271 (321)
T PRK11543 199 VHHLMRRDDAI--PQVALTASVMDAMLELSRTGLGLVAVCDA---QQQVQGVFTDGDLRRWLVGGGALTTPVNEAMTR-- 271 (321)
T ss_pred HHHHhccCCCC--cEeCCCCCHHHHHHHHHHcCCCEEEEEcC---CCcEEEEecHHHHHHHHhCCCCcCCcHHHhcCC--
Confidence 34456666 6 899999999999999977 54 999997 8999999999998621 1 235679999998
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERL 220 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~ 220 (505)
++.++.+++++.++++.|.++++..+||||+ |+++|+||++|++++
T Consensus 272 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 272 GGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 9999999999999999999999999999998 999999999999976
No 65
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.28 E-value=2e-11 Score=104.86 Aligned_cols=102 Identities=17% Similarity=0.195 Sum_probs=86.5
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc--c---cccccccccccCCCceEecCCCCHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS--D---NKVKIFDYMRDCSSNVSVPANYDLG 186 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~--~---~~~~v~~im~~~~~~~~v~~~~~l~ 186 (505)
+++++++++.++++.|.+ +. +||+|+ +++++|+||..|++... . ...++.++|++..++.++++++++.
T Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~ 80 (118)
T cd04617 4 VVVRENTSVYDAIVTLFLEDVGSLFVVDE---DGDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESVL 80 (118)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEcC---CCCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcHH
Confidence 789999999999999976 54 999997 79999999999986322 1 2456788887323688999999999
Q ss_pred HHHHHHHHCCCCeeEEeeC-C---eeeeEEeechhhh
Q 010640 187 QIDEVLEKNDVDFVVLEKD-G---ERLDVVTREDVER 219 (505)
Q Consensus 187 ~a~~~l~~~~i~~lpVvd~-g---~l~GiIt~~dil~ 219 (505)
+++++|.+++++.+||+|+ + +++|+||++|+++
T Consensus 81 ~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 81 EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 9999999999999999987 3 8999999999865
No 66
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.27 E-value=2.1e-11 Score=101.01 Aligned_cols=89 Identities=11% Similarity=0.132 Sum_probs=79.8
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEV 191 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~ 191 (505)
+.++++.++.++++.|.+ ++ +||+|+ +++++|+++.+|+.... .+.++.+++++.++++.
T Consensus 4 ~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~~~~Giv~~~dl~~~~--------------~~~~v~~~~~l~~a~~~ 66 (96)
T cd04614 4 PTVWEETPLPVAVRIMELANVKALPVLDD---DGKLSGIITERDLIAKS--------------EVVTATKRTTVSECAQK 66 (96)
T ss_pred cEeCCCCcHHHHHHHHHHcCCCeEEEECC---CCCEEEEEEHHHHhcCC--------------CcEEecCCCCHHHHHHH
Confidence 789999999999999987 75 999997 89999999999985321 36789999999999999
Q ss_pred HHHCCCCeeEEeeC-CeeeeEEeechhhhh
Q 010640 192 LEKNDVDFVVLEKD-GERLDVVTREDVERL 220 (505)
Q Consensus 192 l~~~~i~~lpVvd~-g~l~GiIt~~dil~~ 220 (505)
|.+++.+++||+|+ |+++|+||++|++++
T Consensus 67 m~~~~~~~lpVv~~~~~~~Giit~~di~~~ 96 (96)
T cd04614 67 MKRNRIEQIPIINGNDKLIGLLRDHDLLKP 96 (96)
T ss_pred HHHhCCCeeeEECCCCcEEEEEEHHHhhcC
Confidence 99999999999999 999999999999863
No 67
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=2.3e-11 Score=102.92 Aligned_cols=100 Identities=17% Similarity=0.220 Sum_probs=88.3
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccc----cccccccccccCCCceEecCCCCHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSD----NKVKIFDYMRDCSSNVSVPANYDLGQ 187 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~----~~~~v~~im~~~~~~~~v~~~~~l~~ 187 (505)
..+++++++.++++.|.+ ++ +||+++ +++++|+++.+|+..... .+.++.++|.+ ++.++.+++++.+
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~ 78 (111)
T cd04626 4 PTIDEDASIREALHEMLKYNTNEIIVKDN---EEKLKGVVTFTDILDLDLFESFLEKKVFNIVSQ--DVFYVNEEDTIDE 78 (111)
T ss_pred eEECCCccHHHHHHHHHHhCCCeEEEEcC---CCCEEEEEehHHhHHHHhhcccccCcHHHHhcC--CcEEEcCCCcHHH
Confidence 678999999999999987 65 999987 799999999999863221 13578899988 8999999999999
Q ss_pred HHHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 188 IDEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 188 a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
+++.|.+++...+||+|+|+++|+||+.|++.
T Consensus 79 ~~~~~~~~~~~~~~Vv~~~~~~G~it~~di~~ 110 (111)
T cd04626 79 ALDIMREKQIGRLPVVDDNKLIGVVRTKDILD 110 (111)
T ss_pred HHHHHHHcCCCeeeEeECCEEEEEEEhHHhcc
Confidence 99999999999999998899999999999875
No 68
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=2e-11 Score=103.15 Aligned_cols=100 Identities=18% Similarity=0.232 Sum_probs=88.4
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc---cccccccccccccCCCceEecCCCCHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL---SDNKVKIFDYMRDCSSNVSVPANYDLGQI 188 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~---~~~~~~v~~im~~~~~~~~v~~~~~l~~a 188 (505)
.++++++++.++.+.+.+ ++ +||+++ +++++|+|+..|+... .....++.++|.. ++.++.+++++.++
T Consensus 4 ~~v~~~~~i~e~~~~~~~~~~~~~~V~~~---~~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~--~~~~i~~~~~~~~~ 78 (111)
T cd04639 4 ETLSPADTLDDAADALLATTQHEFPVVDG---DGHLVGLLTRDDLIRALAEGGPDAPVRGVMRR--DFPTVSPSATLDAV 78 (111)
T ss_pred eEcCCCCcHHHHHHHHHHcCCCcceEECC---CCcEEEEeeHHHHHHHHHhcCCCCcHHHHhcC--CCcEECCCCcHHHH
Confidence 778999999999999977 65 999997 7999999999998632 1234578999987 89999999999999
Q ss_pred HHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 189 DEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 189 ~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
++.|.+++...+||+|+ |+++|++|++|+.+
T Consensus 79 ~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 79 LRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred HHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 99999999999999998 99999999999875
No 69
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.26 E-value=2.9e-11 Score=102.02 Aligned_cols=100 Identities=18% Similarity=0.300 Sum_probs=88.1
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc-cccccccccccccCCCceEecCCCCHHHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL-SDNKVKIFDYMRDCSSNVSVPANYDLGQIDE 190 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~-~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~ 190 (505)
+++++++++.++++.|.+ ++ +||+++ +|+++|++|.+|+... .....++.++|.+ ++.++.+++++.++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~ 79 (110)
T cd04605 5 VTISEDASIKEAAKLMIEENINHLPVVDE---DGRLVGIVTSWDISKAVARDKKSVEDIMTR--NVITATPDEPIDVAAR 79 (110)
T ss_pred EEECCCCCHHHHHHHHHhCCCceEEEECC---CCcEEEEEeHHHHHHHHhhCccCHHHhcCC--CCeEECCCCcHHHHHH
Confidence 789999999999999987 65 899987 8999999999998522 2223468899987 8999999999999999
Q ss_pred HHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 191 VLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 191 ~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
.|.+++...+||+++ |+++|+||+.|+++
T Consensus 80 ~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 80 KMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred HHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 999999999999998 99999999999864
No 70
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.26 E-value=1.1e-11 Score=107.81 Aligned_cols=101 Identities=18% Similarity=0.210 Sum_probs=87.4
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc-----cccccccccccccCCCceEecCCCCHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL-----SDNKVKIFDYMRDCSSNVSVPANYDLG 186 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~-----~~~~~~v~~im~~~~~~~~v~~~~~l~ 186 (505)
++++++.++.++++.|.+ ++ +||+|+ +++++|+++.+|+... ...+.++.++|++ ++.++.+++++.
T Consensus 5 ~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~ 79 (124)
T cd04608 5 VTVLPTVTCAEAIEILKEKGFDQLPVVDE---SGKILGMVTLGNLLSSLSSGKVQPSDPVSKALYK--QFKRVNKNDTLG 79 (124)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEcC---CCCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhc--cceecCCCCCHH
Confidence 889999999999999987 65 999997 7999999999998621 2346789999999 999999999999
Q ss_pred HHHHHHH---------HCCCCeeEEeeC-CeeeeEEeechhhhh
Q 010640 187 QIDEVLE---------KNDVDFVVLEKD-GERLDVVTREDVERL 220 (505)
Q Consensus 187 ~a~~~l~---------~~~i~~lpVvd~-g~l~GiIt~~dil~~ 220 (505)
++.+++. +.+..++||+++ |+++|+||+.|+++.
T Consensus 80 ~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 80 KLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred HHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 9999653 336778899988 999999999999875
No 71
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.26 E-value=3.2e-11 Score=101.02 Aligned_cols=98 Identities=19% Similarity=0.245 Sum_probs=86.6
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEV 191 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~ 191 (505)
.+++++.++.++++.|.+ ++ +||+++ +|+++|+++..|++... ..++.++|.+ ...++.+++++.++++.
T Consensus 4 ~~v~~~~~~~~a~~~~~~~~~~~~~v~d~---~g~~~Giv~~~dl~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 76 (106)
T cd04582 4 ITVRPDDPLSDALGLMDDSDLRALTVVDA---DGQPLGFVTRREAARAS--GGCCGDHAEP--FKVTVSVDDDLRIVLSR 76 (106)
T ss_pred cEecCCCcHHHHHHHHHhcCCCEEEEECC---CCCEEEEEeHHHHHHhc--ccchhhhccc--CCEEECCCCCHHHHHHH
Confidence 788999999999999977 54 889987 89999999999996422 2357889987 78889999999999999
Q ss_pred HHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 192 LEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 192 l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
|.+++...+||+|+ |+++|+||++|+++
T Consensus 77 ~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 77 MFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred HHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999998 99999999999875
No 72
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=2.5e-11 Score=102.99 Aligned_cols=100 Identities=18% Similarity=0.258 Sum_probs=88.5
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc-------cccccccccccccCCCceEecCCCC
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL-------SDNKVKIFDYMRDCSSNVSVPANYD 184 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~-------~~~~~~v~~im~~~~~~~~v~~~~~ 184 (505)
.+++++.++.++.+.|.+ ++ +||+++ +++++|+|+.+|+... .....++.++|.+ ++.++.++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~ 78 (114)
T cd04629 4 VTFTPDMSVTEAVEKLLKSKISGGPVVDD---NGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTT--EVLTVSPDDS 78 (114)
T ss_pred eEeCCCCCHHHHHHHHHhcCCCCccEECC---CCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhcc--CceEECCCCc
Confidence 788999999999999987 65 899987 8999999999998621 1134678999988 8999999999
Q ss_pred HHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 185 LGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 185 l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
+.++++.|.+++...+||+|+|+++|+||++|+++
T Consensus 79 l~~~~~~~~~~~~~~~~Vv~~~~~~Gvit~~di~~ 113 (114)
T cd04629 79 IVDLAQLMLKAKPKRYPVVDDGKLVGQISRRDVLR 113 (114)
T ss_pred HHHHHHHHHHhCCCccCEEECCEEEEEEEHHHHhc
Confidence 99999999999999999998899999999999975
No 73
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.25 E-value=3.3e-10 Score=114.04 Aligned_cols=170 Identities=25% Similarity=0.274 Sum_probs=119.1
Q ss_pred CCccHHHHHHHHHHcC-ccEEEEeCCCCC-----------chhHHHHHHHHHHhCCCceEEEcccCC----HHHHHHHHH
Q 010640 245 TRESDKERLEHLVKAG-VNVVVLDSSQGN-----------SSFQIEMIKYAKKTYPELDVIGGNVVT----MYQAQNLIE 308 (505)
Q Consensus 245 ~~~~~~e~~~~lieaG-ad~I~i~~~~g~-----------~~~~~~~i~~l~~~~~~~~Vi~g~V~t----~e~a~~l~~ 308 (505)
..+++.+.++.+.++| +|.++++.++.+ .+...+.++.+++.. +.||.+|--.+ .+.++.+.+
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~a~~l~~ 180 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEIAKAAEE 180 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCCCchhHHHHHHHHHH
Confidence 3456777788888888 999999663321 244678888888887 78998873322 345788899
Q ss_pred cCCCEEEEccCC-cc-eee-c------ccccccCcCh--HHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEE
Q 010640 309 AGVDGLRVGMGS-GS-ICT-T------QEVCAVGRGQ--ATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTV 377 (505)
Q Consensus 309 aGad~I~v~~g~-g~-~~~-~------~~~~g~g~p~--~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V 377 (505)
+|+|+|.+.+.. |. ... + ....+...|. ...+..+.+..+..++|||+.|||.++.|+.+++.+|||+|
T Consensus 181 ~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V 260 (301)
T PRK07259 181 AGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAV 260 (301)
T ss_pred cCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCce
Confidence 999999875321 11 000 0 0001111111 11344445555556899999999999999999999999999
Q ss_pred EecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHH
Q 010640 378 MMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQ 457 (505)
Q Consensus 378 ~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~ 457 (505)
|+|+.++. | -.+++.+..+++.
T Consensus 261 ~igr~ll~-----------------------------------------------~-----------P~~~~~i~~~l~~ 282 (301)
T PRK07259 261 QVGTANFY-----------------------------------------------D-----------PYAFPKIIEGLEA 282 (301)
T ss_pred eEcHHHhc-----------------------------------------------C-----------cHHHHHHHHHHHH
Confidence 99998852 0 0456689999999
Q ss_pred HhhccCCCCHHHHHHh
Q 010640 458 GFQDLGASSLQSAHDL 473 (505)
Q Consensus 458 ~m~~~G~~~~~~l~~~ 473 (505)
.|...|.+++.|+...
T Consensus 283 ~~~~~g~~~i~~~~g~ 298 (301)
T PRK07259 283 YLDKYGIKSIEEIVGI 298 (301)
T ss_pred HHHHcCCCCHHHHhCc
Confidence 9999999999999754
No 74
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.24 E-value=3.2e-11 Score=106.51 Aligned_cols=100 Identities=16% Similarity=0.198 Sum_probs=88.6
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccc----------------------------cc
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSD----------------------------NK 163 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~----------------------------~~ 163 (505)
++++++.++.++++.|.+ ++ +||+|+ +++++|+|+..|+..... .+
T Consensus 4 ~~v~~~~~~~~a~~~~~~~~~~~l~V~d~---~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04621 4 ATVHPEHSLLHVVDEMEKNGVGRVIVVDD---NGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVP 80 (135)
T ss_pred eEeCCCCcHHHHHHHHHHcCCCcceEECC---CCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhccccccccccccc
Confidence 788999999999999988 66 999997 899999999999862210 13
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 164 VKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 164 ~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
.++.++|.+ ++.++.+++++.++++.|.+++.+++||+++|+++|+||+.|+++
T Consensus 81 ~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~Gvit~~di~~ 134 (135)
T cd04621 81 LVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDNDNIVGVITKTDICR 134 (135)
T ss_pred ccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeCCEEEEEEEHHHHhh
Confidence 478999988 889999999999999999999999999998899999999999876
No 75
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.24 E-value=6.7e-11 Score=98.82 Aligned_cols=98 Identities=13% Similarity=0.239 Sum_probs=87.2
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEV 191 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~ 191 (505)
+.+++++++.++++.|.+ ++ +||+| +++++|+++.+|+.... ...++.++|.+ ++.++++++++.++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~V~d----~~~~~Giv~~~~l~~~~-~~~~~~~~~~~--~~~~v~~~~~l~~~~~~ 76 (105)
T cd04599 4 ITIDPLDSVGRAARLMEKHRIGGLPVVE----DGKLVGIITSRDVRRAH-PNRLVADAMTR--EVVTISPEASLLEAKRL 76 (105)
T ss_pred EEECCCCcHHHHHHHHHHcCCCEEEEEE----CCEEEEEEehHHhhccc-ccCCHHHHccC--CCEEECCCCCHHHHHHH
Confidence 778999999999999987 65 88887 68999999999986432 34568899988 89999999999999999
Q ss_pred HHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 192 LEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 192 l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
|.+++...+||+|+|+++|+||.+|++.
T Consensus 77 ~~~~~~~~~~Vv~~~~~~G~it~~~l~~ 104 (105)
T cd04599 77 MEEKKIERLPVLRERKLVGIITKGTIAL 104 (105)
T ss_pred HHHcCCCEeeEEECCEEEEEEEHHHhcc
Confidence 9999999999999999999999999873
No 76
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=99.24 E-value=1.2e-10 Score=105.81 Aligned_cols=124 Identities=27% Similarity=0.366 Sum_probs=90.7
Q ss_pred HHHHHHHHHHcCccEEEEeCCCC-CchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQG-NSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQ 327 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g-~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~ 327 (505)
..+.++.+.++|+|++.+|.+.- .+..+.+.++.+|+.+ +.+|+ .+.|.|++..+.++|+|+|-- .-..++.
T Consensus 53 T~~ev~~l~~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~--~l~MA-Dist~ee~~~A~~~G~D~I~T----TLsGYT~ 125 (192)
T PF04131_consen 53 TLKEVDALAEAGADIIALDATDRPRPETLEELIREIKEKY--QLVMA-DISTLEEAINAAELGFDIIGT----TLSGYTP 125 (192)
T ss_dssp SHHHHHHHHHCT-SEEEEE-SSSS-SS-HHHHHHHHHHCT--SEEEE-E-SSHHHHHHHHHTT-SEEE-----TTTTSST
T ss_pred CHHHHHHHHHcCCCEEEEecCCCCCCcCHHHHHHHHHHhC--cEEee-ecCCHHHHHHHHHcCCCEEEc----ccccCCC
Confidence 55788899999999999998653 3467889999999986 67766 899999999999999999932 2223333
Q ss_pred cccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
...+ ..|.+..+.++.+ .++|||+.|+|.+++++.+||.+||++|.+|+++.
T Consensus 126 ~t~~-~~pD~~lv~~l~~----~~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAIT 177 (192)
T PF04131_consen 126 YTKG-DGPDFELVRELVQ----ADVPVIAEGRIHTPEQAAKALELGAHAVVVGSAIT 177 (192)
T ss_dssp TSTT-SSHHHHHHHHHHH----TTSEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH
T ss_pred CCCC-CCCCHHHHHHHHh----CCCcEeecCCCCCHHHHHHHHhcCCeEEEECcccC
Confidence 3333 4577777766543 37999999999999999999999999999999875
No 77
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=4.9e-11 Score=100.84 Aligned_cols=100 Identities=15% Similarity=0.287 Sum_probs=88.1
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc-c-----ccccccccccccCCCceEecCCCCH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL-S-----DNKVKIFDYMRDCSSNVSVPANYDL 185 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~-~-----~~~~~v~~im~~~~~~~~v~~~~~l 185 (505)
+.++++.++.++.+.|.+ ++ +||+++ +++++|+++.+|+... . ....++.++|.+ ++.++.++.++
T Consensus 4 ~~i~~~~~~~~~~~~~~~~~~~~~~V~~~---~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~ 78 (113)
T cd04623 4 ITVRPDATVAEAAKLMAEKNIGAVVVVDD---GGRLVGIFSERDIVRKVALRGASALDTPVSEIMTR--NVITVTPDDTV 78 (113)
T ss_pred EEECCCCcHHHHHHHHHHcCCCeEEEECC---CCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCC--CcEEECCCCcH
Confidence 778999999999999987 66 999987 7999999999998621 1 113578999988 89999999999
Q ss_pred HHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 186 GQIDEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 186 ~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
.++++.|.+.+...+||+++|+++|+||.+|+++
T Consensus 79 ~~~l~~~~~~~~~~~~Vv~~~~~~Gvit~~di~~ 112 (113)
T cd04623 79 DEAMALMTERRFRHLPVVDGGKLVGIVSIGDVVK 112 (113)
T ss_pred HHHHHHHHHcCCCEeEEEeCCEEEEEEEHHHhhc
Confidence 9999999999999999998899999999999875
No 78
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=2.9e-11 Score=105.07 Aligned_cols=100 Identities=19% Similarity=0.211 Sum_probs=84.7
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccc--c---cc-------------ccccccccC
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSD--N---KV-------------KIFDYMRDC 173 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~--~---~~-------------~v~~im~~~ 173 (505)
++++++.++.++++.|.+ ++ +||+|+ +++++|+++.+|++.... . .. ...+.|.+
T Consensus 4 ~~v~~~~~~~~a~~~~~~~~~~~i~V~d~---~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (126)
T cd04642 4 VSIDSDERVLDAFKLMRKNNISGLPVVDE---KGKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR- 79 (126)
T ss_pred EEECCCccHHHHHHHHHHhCCCcccEECC---CCcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccC-
Confidence 789999999999999987 66 899997 899999999999873221 1 10 12245666
Q ss_pred CCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 174 SSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 174 ~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
++.++++++++.+++++|.+++.+++||+|+ ++++|+||.+|+++
T Consensus 80 -~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 80 -PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred -CCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 8999999999999999999999999999998 99999999999875
No 79
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.23 E-value=4.2e-11 Score=101.10 Aligned_cols=98 Identities=22% Similarity=0.343 Sum_probs=86.7
Q ss_pred eCCCCCHHHHHHHhcC-C-----e--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHH
Q 010640 117 KAPDGCINDANDFDGS-N-----Y--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQI 188 (505)
Q Consensus 117 v~~~~tv~~a~~~~~~-~-----~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a 188 (505)
+++++++.++++.|.+ + + +||+|+ +++++|+|+.+|+... ..+.++.++|.+ ++.++.+++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~~~~G~v~~~~l~~~-~~~~~v~~~~~~--~~~~i~~~~~~~~~ 75 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDE---EGRLLGVVSLRDLLLA-DPDTPVSDIMDT--DVISVSADDDQEEV 75 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECC---CCCEEEEEEHHHHhcC-CCcchHHHHhCC--CCeEEcCCCCHHHH
Confidence 5788999999999987 6 4 899987 7999999999998643 234578999988 89999999999999
Q ss_pred HHHHHHCCCCeeEEeeC-CeeeeEEeechhhhh
Q 010640 189 DEVLEKNDVDFVVLEKD-GERLDVVTREDVERL 220 (505)
Q Consensus 189 ~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~ 220 (505)
++.|.+.+...+||+|+ |+++|+||+.|+++.
T Consensus 76 ~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 76 ARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred HHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 99999999999999998 999999999999875
No 80
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.23 E-value=4.3e-11 Score=102.03 Aligned_cols=101 Identities=14% Similarity=0.148 Sum_probs=87.9
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc--c---cccccccccccCCCceEecCCCCHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS--D---NKVKIFDYMRDCSSNVSVPANYDLG 186 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~--~---~~~~v~~im~~~~~~~~v~~~~~l~ 186 (505)
.++++++++.++.+.|.+ ++ +||+|+ +++++|+++.+|++... . ...++.++|.+ ++.++.+++++.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~ 78 (115)
T cd04593 4 PVLSATTPLREAAEQLIESKHGSALVVDR---DGGVVGIITLPDLLRALEADEAGEPSAVDEVATP--PLLTVHPDEPLA 78 (115)
T ss_pred cEeCCCCCHHHHHHHHHhCCCcEEEEEcC---CCCEEEEEEHHHHHHHHhcccccccccHHHhccC--CceEECCCCCHH
Confidence 788999999999999987 65 899987 89999999999986321 1 23358889988 999999999999
Q ss_pred HHHHHHHHCCCCeeEEeeC---CeeeeEEeechhhhh
Q 010640 187 QIDEVLEKNDVDFVVLEKD---GERLDVVTREDVERL 220 (505)
Q Consensus 187 ~a~~~l~~~~i~~lpVvd~---g~l~GiIt~~dil~~ 220 (505)
++++.|.+++...+||+|+ |+++|+||++|++++
T Consensus 79 ~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 79 HALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA 115 (115)
T ss_pred HHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence 9999999999999999986 589999999999863
No 81
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.23 E-value=2.9e-11 Score=105.10 Aligned_cols=100 Identities=17% Similarity=0.276 Sum_probs=83.7
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc-----------cccccccccccccCCCceE--
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL-----------SDNKVKIFDYMRDCSSNVS-- 178 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~-----------~~~~~~v~~im~~~~~~~~-- 178 (505)
+++.+++++.++++.|.+ ++ +||+|+ +++++|+++.+|++.. .....++.++|++ +...
T Consensus 4 ~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~~~ 78 (126)
T cd04640 4 IVIPADTSIDEALELMIKHGVRLLLVVDS---DDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTP--KEDLKA 78 (126)
T ss_pred eEECCCCcHHHHHHHHHHcCCcEEEEEcC---CCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCc--hhhhcc
Confidence 789999999999999987 64 899987 7999999999998631 1134568899986 5433
Q ss_pred e----cCCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhh
Q 010640 179 V----PANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVER 219 (505)
Q Consensus 179 v----~~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~ 219 (505)
+ .+++++.++++.|.+++.+.+||+|+ |+++|+||++|+++
T Consensus 79 ~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 79 LDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred ccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 3 36889999999999999999999986 59999999999975
No 82
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.23 E-value=6.3e-10 Score=111.96 Aligned_cols=169 Identities=22% Similarity=0.214 Sum_probs=118.5
Q ss_pred CccHHHHHHHHHHc--CccEEEEeCCCCC-----------chhHHHHHHHHHHhCCCceEEEcccCC----HHHHHHHHH
Q 010640 246 RESDKERLEHLVKA--GVNVVVLDSSQGN-----------SSFQIEMIKYAKKTYPELDVIGGNVVT----MYQAQNLIE 308 (505)
Q Consensus 246 ~~~~~e~~~~liea--Gad~I~i~~~~g~-----------~~~~~~~i~~l~~~~~~~~Vi~g~V~t----~e~a~~l~~ 308 (505)
.++..+.++.+.++ ++|.+.++.++.+ .....+.++.+++.. ++||.++--.+ .+.++.+.+
T Consensus 102 ~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~-~~pv~vKi~~~~~~~~~~a~~l~~ 180 (300)
T TIGR01037 102 VEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT-DVPVFAKLSPNVTDITEIAKAAEE 180 (300)
T ss_pred HHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEECCCChhhHHHHHHHHHH
Confidence 45566667777665 3999999875422 245677888888876 78998874433 345778889
Q ss_pred cCCCEEEEccCC-cc-e--eec-----ccccccCcChHH--HHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEE
Q 010640 309 AGVDGLRVGMGS-GS-I--CTT-----QEVCAVGRGQAT--AVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTV 377 (505)
Q Consensus 309 aGad~I~v~~g~-g~-~--~~~-----~~~~g~g~p~~~--~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V 377 (505)
+|+|+|.+.++- +. . ... ....+...|... ++..+.+..+..++|||+.|||.++.|+.+++..|||+|
T Consensus 181 ~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V 260 (300)
T TIGR01037 181 AGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAV 260 (300)
T ss_pred cCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCce
Confidence 999999986321 10 0 000 001111112221 344455555556799999999999999999999999999
Q ss_pred EecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHH
Q 010640 378 MMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQ 457 (505)
Q Consensus 378 ~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~ 457 (505)
|+|+.++. + + .++.++..+|+.
T Consensus 261 ~igr~~l~----------------------------------------------~----------p--~~~~~i~~~l~~ 282 (300)
T TIGR01037 261 QVGTAVYY----------------------------------------------R----------G--FAFKKIIEGLIA 282 (300)
T ss_pred eecHHHhc----------------------------------------------C----------c--hHHHHHHHHHHH
Confidence 99998752 0 1 466789999999
Q ss_pred HhhccCCCCHHHHHHh
Q 010640 458 GFQDLGASSLQSAHDL 473 (505)
Q Consensus 458 ~m~~~G~~~~~~l~~~ 473 (505)
.|...|.++++|++..
T Consensus 283 ~~~~~g~~~~~e~~g~ 298 (300)
T TIGR01037 283 FLKAEGFTSIEELIGI 298 (300)
T ss_pred HHHHcCCCCHHHHhCc
Confidence 9999999999999754
No 83
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.23 E-value=1.8e-11 Score=133.86 Aligned_cols=163 Identities=13% Similarity=0.091 Sum_probs=119.3
Q ss_pred eeeeeeecCcccccceEEEccchh-hhH-----HHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhhhccCCccccCCCeeE
Q 010640 43 VSLSTRLTRNIDLSLPCVASPMDT-VTE-----DYMAAAMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVF 116 (505)
Q Consensus 43 ~~~~~~lt~~~~l~~Pli~a~m~~-vt~-----~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v~~~~~~~~~~p~~~~ 116 (505)
+-+..|+|+++....|++.+.+-. .+. ..+...+.+..+ .+ ...+.++ ..+.+|.|.+++ .+
T Consensus 392 i~l~~Elt~~~~~~~P~~ia~~~a~~v~~~~~~~~iy~~~~~~~~-------~~--~~~~~L~-~~~V~dim~~~~--~~ 459 (574)
T PRK01862 392 ILMIFEMTLSYQVVLPLMVSCVVAYFTARALGTTSMYEITLRRHQ-------DE--AERERLR-TTQMRELIQPAQ--TV 459 (574)
T ss_pred HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCChHHHHHHhcc-------cc--chhhHHh-hCcHHHHhcCCC--ce
Confidence 345678999999999998766421 111 011111111110 01 1111122 234556777777 88
Q ss_pred eCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc---cc--cccccccccccCCCceEecCCCCHHHH
Q 010640 117 KAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL---SD--NKVKIFDYMRDCSSNVSVPANYDLGQI 188 (505)
Q Consensus 117 v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~---~~--~~~~v~~im~~~~~~~~v~~~~~l~~a 188 (505)
+++++++.|+.+.|.+ +. +||+|+ +++++|+|+.+|++.. .. .+.++.++|++ ++.++++++++.++
T Consensus 460 v~~~~tl~ea~~~l~~~~~~~~~VvD~---~g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~~--~~~~v~~d~~L~~a 534 (574)
T PRK01862 460 VPPTASVADMTRVFLEYPVKYLYVVDD---DGRFRGAVALKDITSDLLDKRDTTDKTAADYAHT--PFPLLTPDMPLGDA 534 (574)
T ss_pred eCCCCCHHHHHHHHHhCCCceEEEEcC---CCeEEEEEEHHHHHHHhhcccccccchHHHhccC--CCeeECCCCCHHHH
Confidence 9999999999999987 65 999997 8999999999998641 11 23578999998 89999999999999
Q ss_pred HHHHHHCCCCeeEEeeC-C--eeeeEEeechhhhhhc
Q 010640 189 DEVLEKNDVDFVVLEKD-G--ERLDVVTREDVERLKG 222 (505)
Q Consensus 189 ~~~l~~~~i~~lpVvd~-g--~l~GiIt~~dil~~~~ 222 (505)
++.|.+++.+.+||+|+ + +++|+||++|+++...
T Consensus 535 l~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 535 LEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred HHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 99999999999999986 3 8999999999998753
No 84
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.23 E-value=5.8e-11 Score=99.51 Aligned_cols=97 Identities=20% Similarity=0.181 Sum_probs=86.1
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEV 191 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~ 191 (505)
+++++++++.++.+.|.+ ++ +||+| +++++|+++.+|+... ...++.++|.+ ++.+++++.++.++++.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d----~~~~~G~v~~~~l~~~--~~~~~~~~~~~--~~~~v~~~~~l~~a~~~ 75 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVD----YNKFLGAVYLKDIENA--TYGDVVDYIVR--GIPYVRLTSTAEEAWEV 75 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEE----CCEEEEEEEHHHHhhh--cccchhhhhhc--CCcEEcCCCCHHHHHHH
Confidence 688999999999999987 65 89998 5899999999998632 22457888987 88999999999999999
Q ss_pred HHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 192 LEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 192 l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
|.+++...+||+|+|+++|+||++|+++
T Consensus 76 ~~~~~~~~~~Vv~~~~~iGvit~~dl~~ 103 (104)
T cd04594 76 MMKNKTRWCPVVDDGKFKGIVTLDSILD 103 (104)
T ss_pred HHHcCcceEEEEECCEEEEEEEHHHhhc
Confidence 9999999999998899999999999875
No 85
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.23 E-value=3.1e-11 Score=102.78 Aligned_cols=99 Identities=16% Similarity=0.244 Sum_probs=85.5
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccc------c----ccccccccccCCCceEecC
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSD------N----KVKIFDYMRDCSSNVSVPA 181 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~------~----~~~v~~im~~~~~~~~v~~ 181 (505)
+++++++++.++.+.|.+ ++ +||+|+ +++++|+++.+|+..... . ..++.++|.+ ++.++.+
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~ 78 (116)
T cd04643 4 AYVQDTNTLRHALLVLTKHGYSAIPVLDK---EGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNT--DVPVIID 78 (116)
T ss_pred EEECCCCcHHHHHHHHHHCCCceeeeECC---CCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcC--CCceecC
Confidence 789999999999999987 65 999997 799999999999863211 1 4578899988 8999999
Q ss_pred CCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhh
Q 010640 182 NYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERL 220 (505)
Q Consensus 182 ~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~ 220 (505)
++++.++++.|.+.+ .+||+|+ |+++|+||+.|++++
T Consensus 79 ~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~~ 116 (116)
T cd04643 79 DADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILKA 116 (116)
T ss_pred CCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhcC
Confidence 999999999998865 5999998 999999999998763
No 86
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.23 E-value=2.8e-11 Score=106.47 Aligned_cols=100 Identities=22% Similarity=0.366 Sum_probs=88.2
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc---------------------------cccc
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS---------------------------DNKV 164 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~---------------------------~~~~ 164 (505)
++++++.++.++.+.|.+ ++ +||+|+ +++++|+|+.+|+.... ....
T Consensus 5 ~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~---~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04586 5 VTVSPETSVAEAARLMLDNHISGLPVVDD---DGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGR 81 (135)
T ss_pred EEeCCCCCHHHHHHHHHHcCCCCceEECC---CCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCC
Confidence 789999999999999988 65 999997 89999999999985210 1235
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 165 KIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 165 ~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
++.++|.+ ++.++.+++++.++++.|.+.+.+.+||+|+|+++|+||+.|+++
T Consensus 82 ~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~g~~~Gvit~~di~~ 134 (135)
T cd04586 82 KVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVRGGRLVGIVSRADLLR 134 (135)
T ss_pred CHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCccCEecCCEEEEEEEhHhhhc
Confidence 68899988 899999999999999999999999999999899999999999875
No 87
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.23 E-value=4.8e-11 Score=101.19 Aligned_cols=100 Identities=18% Similarity=0.247 Sum_probs=88.4
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc--cc---cccccccccccCCCceEecCCCCHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL--SD---NKVKIFDYMRDCSSNVSVPANYDLG 186 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~--~~---~~~~v~~im~~~~~~~~v~~~~~l~ 186 (505)
..+++++++.++.+.|.+ ++ +||+|+ +++++|+++.+|+... .. ...++.++|.+ ++.++.+++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~l~ 78 (113)
T cd04615 4 SCVVLNTDIARAVAEMYTSGSRALPVVDD---KKRLVGIITRYDVLSYALESEELKDAKVREVMNS--PVITIDANDSIA 78 (113)
T ss_pred EEeeCCCcHHHHHHHHHHcCCceEeEEcC---CCCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccC--CceEECCCCcHH
Confidence 789999999999999987 65 899987 7999999999998631 11 34578999988 899999999999
Q ss_pred HHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 187 QIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 187 ~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
++++.|.+.+...+||+|+ |+++|+||+.|+++
T Consensus 79 ~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 79 KARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred HHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 9999999999999999998 99999999999875
No 88
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.23 E-value=4.6e-11 Score=102.77 Aligned_cols=101 Identities=17% Similarity=0.256 Sum_probs=88.5
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc--------------ccccccccccccCCCce
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS--------------DNKVKIFDYMRDCSSNV 177 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~--------------~~~~~v~~im~~~~~~~ 177 (505)
++++++.++.++++.|.+ ++ +||+|+ +++++|+++..|++... ....++.++|.+ ++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 78 (122)
T cd04635 4 VTCTPDDPVSKVWDLMLESGFTGLPVVQK---AGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMST--PVY 78 (122)
T ss_pred EEeCCCCcHHHHHHHHHHcCCCcccEECC---CCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcC--CCe
Confidence 789999999999999987 65 999987 89999999999986310 124567889987 899
Q ss_pred EecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhh
Q 010640 178 SVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERL 220 (505)
Q Consensus 178 ~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~ 220 (505)
++.+++++.++++.|.+++.+.+||+|+ |+++|++|++|++++
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~~ 122 (122)
T cd04635 79 SVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLKA 122 (122)
T ss_pred eECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhcC
Confidence 9999999999999999999999999998 999999999999863
No 89
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=5.1e-11 Score=100.86 Aligned_cols=100 Identities=24% Similarity=0.368 Sum_probs=88.2
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc-c---ccccccccccccCCCceEecCCCCHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL-S---DNKVKIFDYMRDCSSNVSVPANYDLGQ 187 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~-~---~~~~~v~~im~~~~~~~~v~~~~~l~~ 187 (505)
.+++++.++.++.+.|.+ ++ +||+++ +++++|+++.+|+... . ....++.++|.+ ++.++.+++++.+
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~ 78 (112)
T cd04624 4 VTVDPDTSIREAAKLMAEENVGSVVVVDP---DERPIGIVTERDIVRAVAAGIDLDTPVSEIMTR--DLVTVDPDEPVAE 78 (112)
T ss_pred eEECCCCcHHHHHHHHHHcCCCEEEEECC---CCCEEEEeeHHHHHHHHhccCCCccCHHHhccC--CCEEECCCCcHHH
Confidence 788999999999999977 65 899987 7999999999998532 1 234578899988 8999999999999
Q ss_pred HHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 188 IDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 188 a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
+++.|.+++...+||+++ |+++|++|++|+++
T Consensus 79 ~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 79 AAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred HHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 999999999999999998 99999999999875
No 90
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=4.3e-11 Score=102.99 Aligned_cols=100 Identities=20% Similarity=0.370 Sum_probs=88.6
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc--------------ccccccccccccCCCce
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS--------------DNKVKIFDYMRDCSSNV 177 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~--------------~~~~~v~~im~~~~~~~ 177 (505)
+++.+++++.++.+.|.+ ++ +||+++ +++++|+++.+|++... ....++.++|.. +++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 78 (122)
T cd04803 4 VTLSEDDSLADAEELMREHRIRHLPVVNE---DGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKT--DVL 78 (122)
T ss_pred EEeCCCCcHHHHHHHHHHcCcccccEECC---CCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCC--CCe
Confidence 788999999999999988 76 999997 79999999999986321 124578899987 899
Q ss_pred EecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 178 SVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 178 ~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
++.+++++.++++.|.+.+.+.+||+|+ |+++|+||+.|+++
T Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 79 TVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred EeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 9999999999999999999999999999 99999999999875
No 91
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=4.6e-11 Score=103.26 Aligned_cols=100 Identities=16% Similarity=0.249 Sum_probs=88.1
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCC-CeEEEEEecccccccc--c--------------cccccccccccCC
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRR-SRILGYVTKSDWENLS--D--------------NKVKIFDYMRDCS 174 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~-g~lvGivt~~Dl~~~~--~--------------~~~~v~~im~~~~ 174 (505)
++++++.++.+++++|.+ ++ +||+++ + ++++|+|+.+|+.... . ...++.++|.+
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~i~V~d~---~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (125)
T cd04631 4 VTVPPTTPIMEAAKIMVRNGFRRLPVVDE---GTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTR-- 78 (125)
T ss_pred eEeCCCCcHHHHHHHHHHcCcccceeEeC---CCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcC--
Confidence 778999999999999988 66 899987 5 9999999999986211 1 13478899987
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
+++++++++++.++++.|.+.+.+.+||+|+ |+++|+||+.||++
T Consensus 79 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 79 NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 8999999999999999999999999999998 99999999999986
No 92
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=5e-11 Score=103.01 Aligned_cols=99 Identities=14% Similarity=0.232 Sum_probs=82.9
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCC-CeEEEEEecccccccc-c--cc-----------cccccccccCCCc
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRR-SRILGYVTKSDWENLS-D--NK-----------VKIFDYMRDCSSN 176 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~-g~lvGivt~~Dl~~~~-~--~~-----------~~v~~im~~~~~~ 176 (505)
.++++++++.++++.|.+ ++ +||+|+ + ++++|+|+.+|+.... . .. ..+.++|.+ ++
T Consensus 4 ~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 78 (123)
T cd04627 4 IPVPSTASLFQAIEILGSGGIHRVAVTEE---ESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTS--DV 78 (123)
T ss_pred eecCCCCCHHHHHHHHhhCCcceEEEEeC---CCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcC--Cc
Confidence 678999999999999987 65 999997 6 8999999999985211 0 00 112246777 89
Q ss_pred eEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhh
Q 010640 177 VSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVE 218 (505)
Q Consensus 177 ~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil 218 (505)
.++.+++++.++++.|.+++..++||+|+ |+++|+||++|+-
T Consensus 79 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 79 ISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred eEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 99999999999999999999999999998 9999999999974
No 93
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=99.22 E-value=7.7e-11 Score=121.90 Aligned_cols=170 Identities=19% Similarity=0.244 Sum_probs=126.9
Q ss_pred hhHHHHHHHHHHhCCCceEEEcccC--CHHHHHH-HHHcCCCEEEEccCCcc--eeecccccccCcChHHHHHHHHHHHh
Q 010640 274 SFQIEMIKYAKKTYPELDVIGGNVV--TMYQAQN-LIEAGVDGLRVGMGSGS--ICTTQEVCAVGRGQATAVYKVSSIAA 348 (505)
Q Consensus 274 ~~~~~~i~~l~~~~~~~~Vi~g~V~--t~e~a~~-l~~aGad~I~v~~g~g~--~~~~~~~~g~g~p~~~~l~~v~~~~~ 348 (505)
+.....|..+|+..+..+|.+|-+. -.++... ..++++|.|.++.+.|+ ...-.....+|+|+...+.++.+.+.
T Consensus 288 eDLaqlI~dLk~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~ 367 (485)
T COG0069 288 EDLAQLIKDLKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLV 367 (485)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHH
Confidence 5667778888887665667776443 3344433 77899999999743332 22222356789999999999998887
Q ss_pred hcC----CcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccccc
Q 010640 349 QSG----VPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGD 424 (505)
Q Consensus 349 ~~~----ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~ 424 (505)
..+ +-|++|||++|+.||+||++||||.|.+||+.+-+ ||- ..+.-
T Consensus 368 ~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~lia--------------------~GC----------im~r~ 417 (485)
T COG0069 368 LNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTAALVA--------------------LGC----------IMCRV 417 (485)
T ss_pred HcCCcceeEEEecCCccCHHHHHHHHHhCcchhhhchHHHHH--------------------hhh----------Hhhhh
Confidence 653 88999999999999999999999999999986531 110 11234
Q ss_pred ccccccccceeeeecc-------CC---chhhHHHHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 425 KAKLKIAQGVVGAVAD-------KG---SVLKFIPYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 425 ~~~~~~~~g~~~~~~~-------~~---~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
|+++.+|.||.++.|. ++ .|.+++..+.+++|..|..+|.+++.||..+
T Consensus 418 CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~a~e~rella~lG~~~l~el~g~ 476 (485)
T COG0069 418 CHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEELRELLAALGKRSLSELIGR 476 (485)
T ss_pred ccCCCCCceeeecCHHHHhhcCccccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhcc
Confidence 5677788888777741 22 5678888999999999999999999999854
No 94
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.21 E-value=6.4e-11 Score=100.24 Aligned_cols=100 Identities=13% Similarity=0.226 Sum_probs=85.2
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce-EEEEeCCCCCCeEEEEEecccccccc------ccccccccccccCCCceEecCCCCHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY-VFVTESGTRRSRILGYVTKSDWENLS------DNKVKIFDYMRDCSSNVSVPANYDLG 186 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~-~pVvd~~~~~g~lvGivt~~Dl~~~~------~~~~~v~~im~~~~~~~~v~~~~~l~ 186 (505)
.++++++++.++++.|.+ +. .+++++ +++++|+++.+|+.... ....++.++|.+ ++.++.+++++.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~ 78 (112)
T cd04625 4 YTVAPETLLSEAVATMAEQDLGSLVVME---RGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNP--EPIVASPDDSID 78 (112)
T ss_pred EEECCCCcHHHHHHHHHHcCCCeEEEee---CCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCC--CCeEECCCCCHH
Confidence 778999999999999977 65 434444 78999999999986221 124579999987 889999999999
Q ss_pred HHHHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 187 QIDEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 187 ~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
+++++|.+++...+||+|+|+++|+||++|+++
T Consensus 79 ~a~~~m~~~~~~~l~Vv~~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 79 EVRRLMVERHLRYLPVLDGGTLLGVISFHDVAK 111 (112)
T ss_pred HHHHHHHHcCCCeeeEEECCEEEEEEEHHHhhc
Confidence 999999999999999998899999999999875
No 95
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.21 E-value=7.2e-11 Score=99.69 Aligned_cols=99 Identities=26% Similarity=0.436 Sum_probs=87.7
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccc---cccccccccccCCCceEecCCCCHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSD---NKVKIFDYMRDCSSNVSVPANYDLGQI 188 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~---~~~~v~~im~~~~~~~~v~~~~~l~~a 188 (505)
++++++.++.++.+.|.+ ++ +||+| +++++|+++..|++.... ...++.++|.+ ++.++.+++++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~V~d----~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~ 78 (110)
T cd04595 5 KTVRPEATIEEARELLLRYGHTALPVVE----GGRVVGIISRRDVEKALRHGLGHAPVKDYMST--DVVTVPPDTPLSEV 78 (110)
T ss_pred eEeCCCCcHHHHHHHHHHcCCCeeeEee----CCEEEEEEEHHHHHHHHhcccccCcHHHHhcC--CCEEECCCCcHHHH
Confidence 788999999999999987 65 89998 589999999999863221 34678999988 89999999999999
Q ss_pred HHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 189 DEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 189 ~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
+++|.+++.+.+||+++|+++|+||+.|+++
T Consensus 79 ~~~~~~~~~~~~~V~~~~~~~Gvvt~~di~~ 109 (110)
T cd04595 79 QELMVEHDIGRVPVVEDGRLVGIVTRTDLLR 109 (110)
T ss_pred HHHHHHcCCCeeEEEeCCEEEEEEEhHHhhc
Confidence 9999999999999999899999999999875
No 96
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.20 E-value=8.9e-11 Score=99.28 Aligned_cols=99 Identities=17% Similarity=0.203 Sum_probs=86.9
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc-----ccccccccccccCCCceEecCCCCHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS-----DNKVKIFDYMRDCSSNVSVPANYDLG 186 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~-----~~~~~v~~im~~~~~~~~v~~~~~l~ 186 (505)
+.++++.++.++++.|.+ ++ ++|+| +++++|+++.+|++... ....++.++|.+ ++.++++++++.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d----~~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~l~ 77 (111)
T cd04589 4 LIVDASTSIRDAARLMREHGADALLVRD----GDPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATF--PLITVDPDDFLF 77 (111)
T ss_pred EEECCCCcHHHHHHHHHHcCCCEEEEec----CCeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCC--CcEEECCCCcHH
Confidence 788999999999999987 65 88887 47899999999986321 234678899988 899999999999
Q ss_pred HHHHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 187 QIDEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 187 ~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
++++.|.+++...+||+|+++++|+||..|+++
T Consensus 78 ~~~~~~~~~~~~~~~Vv~~~~~~G~it~~dl~~ 110 (111)
T cd04589 78 NALLLMTRHRIHRVVVREGGEVVGVLEQTDLLS 110 (111)
T ss_pred HHHHHHHHhCccEEEEeeCCEEEEEEEhHHhhc
Confidence 999999999999999998899999999999875
No 97
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.20 E-value=6.4e-11 Score=100.07 Aligned_cols=99 Identities=18% Similarity=0.252 Sum_probs=85.0
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCC-CeEEEEEeccccccccccc---cccccccccCCCceEecCCCCHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRR-SRILGYVTKSDWENLSDNK---VKIFDYMRDCSSNVSVPANYDLGQ 187 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~-g~lvGivt~~Dl~~~~~~~---~~v~~im~~~~~~~~v~~~~~l~~ 187 (505)
++++++.++.++++.|.+ ++ +||+++ + ++++|+++..|+....... .++.++| . ++.++.+++++.+
T Consensus 4 ~~i~~~~~i~~a~~~~~~~~~~~~~v~~~---~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~-~--~~~~v~~~~~l~~ 77 (111)
T cd04590 4 VALDADDTLEEILELIAESGHSRFPVYDG---DLDNIIGVVHVKDLLRALAEGEEDLDLRDLL-R--PPLFVPESTPLDD 77 (111)
T ss_pred EEEcCCCCHHHHHHHHhhCCCceEEEECC---CCceEEEEEEHHHHHHHHHcCCCcCCHHHHh-c--CCeecCCCCcHHH
Confidence 789999999999999988 65 899987 6 8999999999986322111 3566666 4 6789999999999
Q ss_pred HHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 188 IDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 188 a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
+++.|.+++.+.+||+|+ |+++|+||++|+++
T Consensus 78 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 78 LLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred HHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 999999999999999999 99999999999875
No 98
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.20 E-value=7.8e-11 Score=100.31 Aligned_cols=99 Identities=23% Similarity=0.368 Sum_probs=84.4
Q ss_pred eEeCCCCCHHHHHHHhcC-C-e--EEEEeCCCCCCeEEEEEecccccccc----c-cccccccccccCCCceEecCC--C
Q 010640 115 VFKAPDGCINDANDFDGS-N-Y--VFVTESGTRRSRILGYVTKSDWENLS----D-NKVKIFDYMRDCSSNVSVPAN--Y 183 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~-~--~pVvd~~~~~g~lvGivt~~Dl~~~~----~-~~~~v~~im~~~~~~~~v~~~--~ 183 (505)
++++++.++.++.+.|.+ + . +||++ +++++|+++.+|+.... . ...++.++|.+ +++++.++ +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~~ 77 (115)
T cd04620 4 LTVTPDTPVADAIALMSQQGDSSCVLVVE----KGRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQ--PVVTLQESEIQ 77 (115)
T ss_pred eEeCCCCcHHHHHHHHHhcCCCceEEEcC----CCcEEEEEeHHHHHHHHhcCCCccccCHHHhcCC--CcEEEeccccc
Confidence 788999999999999977 6 5 55555 68999999999986321 1 23578899987 88889887 6
Q ss_pred CHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 184 DLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 184 ~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
++.++++.|.+++...+||+|+ |+++|+||++|+++
T Consensus 78 ~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 78 DIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred CHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 8999999999999999999998 99999999999976
No 99
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.20 E-value=9.4e-10 Score=109.02 Aligned_cols=171 Identities=22% Similarity=0.251 Sum_probs=122.9
Q ss_pred CccHHHHHHHHHHcC-ccEEEEeCCCCCc----------hhHHHHHHHHHHhCCCceEEEcccCC----HHHHHHHHHcC
Q 010640 246 RESDKERLEHLVKAG-VNVVVLDSSQGNS----------SFQIEMIKYAKKTYPELDVIGGNVVT----MYQAQNLIEAG 310 (505)
Q Consensus 246 ~~~~~e~~~~lieaG-ad~I~i~~~~g~~----------~~~~~~i~~l~~~~~~~~Vi~g~V~t----~e~a~~l~~aG 310 (505)
.+++.+.+..+.+.+ +|+++++.++.+. +.+.+.++++++.. .+||.+|--.+ .+.|+.+.++|
T Consensus 108 ~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~-~~Pv~vKl~P~~~di~~iA~~~~~~g 186 (310)
T COG0167 108 EEAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAAT-KVPVFVKLAPNITDIDEIAKAAEEAG 186 (310)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcc-cCceEEEeCCCHHHHHHHHHHHHHcC
Confidence 345667777777777 8999998876542 23444555666665 78998873323 34568888999
Q ss_pred CCEEEEccCCc--c-e-eec------ccccccCcChH--HHHHHHHHHHhhcC--CcEEecCCCCCHHHHHHHHHhCCCE
Q 010640 311 VDGLRVGMGSG--S-I-CTT------QEVCAVGRGQA--TAVYKVSSIAAQSG--VPVIADGGISNSGHIVKALVLGAST 376 (505)
Q Consensus 311 ad~I~v~~g~g--~-~-~~~------~~~~g~g~p~~--~~l~~v~~~~~~~~--ipvIa~GGI~~~~di~kal~lGA~~ 376 (505)
+|++.+.+.-. . + ..+ ....|.+.|.+ .++..+++.++..+ +|||..|||.|++|+.+-+.+||++
T Consensus 187 ~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~ 266 (310)
T COG0167 187 ADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASA 266 (310)
T ss_pred CcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCch
Confidence 99998865221 1 1 111 12333333433 36666777776655 9999999999999999999999999
Q ss_pred EEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHH
Q 010640 377 VMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVK 456 (505)
Q Consensus 377 V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~ 456 (505)
||+||.|.. +|. .+++++..+|.
T Consensus 267 vQv~Tal~~----------------------------------------------~Gp-----------~i~~~I~~~l~ 289 (310)
T COG0167 267 VQVGTALIY----------------------------------------------KGP-----------GIVKEIIKGLA 289 (310)
T ss_pred heeeeeeee----------------------------------------------eCc-----------hHHHHHHHHHH
Confidence 999998731 121 56778999999
Q ss_pred HHhhccCCCCHHHHHHhh
Q 010640 457 QGFQDLGASSLQSAHDLL 474 (505)
Q Consensus 457 ~~m~~~G~~~~~~l~~~~ 474 (505)
+.|..-|..+++|++..+
T Consensus 290 ~~l~~~g~~si~d~iG~~ 307 (310)
T COG0167 290 RWLEEKGFESIQDIIGSA 307 (310)
T ss_pred HHHHHcCCCCHHHHhchh
Confidence 999999999999998763
No 100
>PLN02826 dihydroorotate dehydrogenase
Probab=99.18 E-value=1.2e-09 Score=113.31 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=104.7
Q ss_pred CccEEEEeCCCCCc---------hhHHHHHHHHHHh--------CCCceEEEcc--cCCHHH----HHHHHHcCCCEEEE
Q 010640 260 GVNVVVLDSSQGNS---------SFQIEMIKYAKKT--------YPELDVIGGN--VVTMYQ----AQNLIEAGVDGLRV 316 (505)
Q Consensus 260 Gad~I~i~~~~g~~---------~~~~~~i~~l~~~--------~~~~~Vi~g~--V~t~e~----a~~l~~aGad~I~v 316 (505)
.+|+++++.++.+. ....+.++.+++. ...+||++|- ..+.++ ++.+.++|+|+|++
T Consensus 216 ~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~ 295 (409)
T PLN02826 216 YADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLII 295 (409)
T ss_pred hCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 49999998876443 2234444444422 0258999974 344434 77788999999999
Q ss_pred ccCCc-c---ee---ecccccccCcCh--HHHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 317 GMGSG-S---IC---TTQEVCAVGRGQ--ATAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 317 ~~g~g-~---~~---~~~~~~g~g~p~--~~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.+.-- . .. ......|...+. ..++..+++..+.. ++|||++|||.++.|+.+.+.+||++||++|.|..
T Consensus 296 ~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~ 375 (409)
T PLN02826 296 SNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAY 375 (409)
T ss_pred EcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHh
Confidence 75211 0 00 001122222222 12344444444434 59999999999999999999999999999998741
Q ss_pred CCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCC
Q 010640 386 STEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGAS 465 (505)
Q Consensus 386 ~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~ 465 (505)
+| + .++.++..+|+..|...|++
T Consensus 376 ----------------------------------------------~G---------p--~~i~~I~~eL~~~l~~~G~~ 398 (409)
T PLN02826 376 ----------------------------------------------EG---------P--ALIPRIKAELAACLERDGFK 398 (409)
T ss_pred ----------------------------------------------cC---------H--HHHHHHHHHHHHHHHHcCCC
Confidence 11 1 46778999999999999999
Q ss_pred CHHHHHH
Q 010640 466 SLQSAHD 472 (505)
Q Consensus 466 ~~~~l~~ 472 (505)
+++|+..
T Consensus 399 si~e~iG 405 (409)
T PLN02826 399 SIQEAVG 405 (409)
T ss_pred CHHHHhC
Confidence 9999975
No 101
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.18 E-value=1.6e-10 Score=122.41 Aligned_cols=121 Identities=18% Similarity=0.181 Sum_probs=101.8
Q ss_pred HHHHHhhhccC-----CccccCCCeeEeCCCCCHHHHHHHhcC------C-e-EEEEeCCCCCCeEEEEEeccccccccc
Q 010640 95 ARLVVSAKSRR-----VPIFSSSLDVFKAPDGCINDANDFDGS------N-Y-VFVTESGTRRSRILGYVTKSDWENLSD 161 (505)
Q Consensus 95 ~~~v~~v~~~~-----~~~~~~p~~~~v~~~~tv~~a~~~~~~------~-~-~pVvd~~~~~g~lvGivt~~Dl~~~~~ 161 (505)
++.++++..+. ++|..++ +++++++|+.++++.+++ + + +||+|+ +++++|+|+.+|+... .
T Consensus 119 r~~i~~ll~~~e~tvg~iMt~~~--~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~---~~~l~GvV~l~dLl~a-~ 192 (449)
T TIGR00400 119 RKAINLLLSYSDDSAGRIMTIEY--VELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE---SKHLKGVLSIRDLILA-K 192 (449)
T ss_pred HHHHHHHhCCCcchHHHhCcCce--EEECCCCcHHHHHHHHHhcCCCccceeEEEEECC---CCeEEEEEEHHHHhcC-C
Confidence 44555554443 4777677 899999999999999862 2 2 788887 8999999999998643 3
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcC
Q 010640 162 NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGY 223 (505)
Q Consensus 162 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~ 223 (505)
.+.++.++|++ +++++++++++.++++.|.+++...+||||+ |+++|+||.+|+++....
T Consensus 193 ~~~~v~~im~~--~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~ 253 (449)
T TIGR00400 193 PEEILSSIMRS--SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQS 253 (449)
T ss_pred CCCcHHHHhCC--CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHh
Confidence 45679999998 8999999999999999999999999999998 999999999999988753
No 102
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.18 E-value=1.1e-10 Score=98.82 Aligned_cols=100 Identities=22% Similarity=0.240 Sum_probs=88.6
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc----c-cccccccccccCCCceEecCCCCHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS----D-NKVKIFDYMRDCSSNVSVPANYDLG 186 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~----~-~~~~v~~im~~~~~~~~v~~~~~l~ 186 (505)
++++++.++.++++.|.+ ++ +||+++ +++++|+|+.+|++... . ...++.++|.+ ++.++.+++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~~~ 78 (114)
T cd04613 4 VTIPEDTPLNELLDVIAHSPENNFPVVDD---DGRLVGIVSLDDIREILFDPSLYDLVVASDIMTK--PPVVVYPEDSLE 78 (114)
T ss_pred eeeCCCCcHHHHHHHHHhCCCcceeEECC---CCCEEEEEEHHHHHHHHhcccccccEEHHHhccC--CCcEEcCCCCHH
Confidence 789999999999999988 66 999997 78999999999996321 1 12678999998 899999999999
Q ss_pred HHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhh
Q 010640 187 QIDEVLEKNDVDFVVLEKD--GERLDVVTREDVER 219 (505)
Q Consensus 187 ~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~ 219 (505)
++++.|.+.+...+||+|+ ++++|++|.+|++.
T Consensus 79 ~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 79 DALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred HHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 9999999999999999986 89999999999875
No 103
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.18 E-value=3.7e-11 Score=104.83 Aligned_cols=109 Identities=20% Similarity=0.348 Sum_probs=93.9
Q ss_pred cCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc------ccccccccccccCC
Q 010640 104 RRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS------DNKVKIFDYMRDCS 174 (505)
Q Consensus 104 ~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~------~~~~~v~~im~~~~ 174 (505)
...+|..+. +.++|++++.+++++|++ ++ +||++ +++++|-||.+++.... -....++++|..
T Consensus 67 a~~iM~spv--v~v~pdDsi~~vv~lM~~~g~SQlPVi~----~~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e-- 138 (187)
T COG3620 67 AKTIMHSPV--VSVSPDDSISDVVNLMRDKGISQLPVIE----EDKVVGSITENDIVRALLEGMESIRSLRVREVMGE-- 138 (187)
T ss_pred HhhhccCCe--eEECchhhHHHHHHHHHHcCCccCceee----CCeeeeeecHHHHHHHHhccccchhhhhHHHHhcC--
Confidence 345777777 899999999999999999 98 99999 69999999999985221 135689999998
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~ 222 (505)
+++++.+++++.-+-.+|..++ .+.|+++|+++||||+.||++...
T Consensus 139 ~fP~Vs~~~~l~vI~~LL~~~~--AVlV~e~G~~vGIITk~DI~k~~~ 184 (187)
T COG3620 139 PFPTVSPDESLNVISQLLEEHP--AVLVVENGKVVGIITKADIMKLLA 184 (187)
T ss_pred CCCcCCCCCCHHHHHHHHhhCC--eEEEEeCCceEEEEeHHHHHHHHh
Confidence 9999999999999999998765 478887799999999999998753
No 104
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=9.6e-11 Score=101.91 Aligned_cols=100 Identities=19% Similarity=0.284 Sum_probs=86.7
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc--c----------------ccccccccccccC
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL--S----------------DNKVKIFDYMRDC 173 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~--~----------------~~~~~v~~im~~~ 173 (505)
+.+++++++.++.++|.+ ++ +||+++ +++++|++|.+|+... . ....++.++|++
T Consensus 4 ~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (128)
T cd04632 4 ITVREDDSVGKAINVLREHGISRLPVVDD---NGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS- 79 (128)
T ss_pred eEeCCCCCHHHHHHHHHHcCCCEEEEECC---CCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC-
Confidence 678999999999999988 65 999997 7999999999998521 1 113468899988
Q ss_pred CCceEecCCCCHHHHHHHHHHCCCCeeEEee--C-CeeeeEEeechhhh
Q 010640 174 SSNVSVPANYDLGQIDEVLEKNDVDFVVLEK--D-GERLDVVTREDVER 219 (505)
Q Consensus 174 ~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd--~-g~l~GiIt~~dil~ 219 (505)
++++++++.++.++++.|.+.+...+||++ + |+++|+||++|+++
T Consensus 80 -~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 80 -PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred -CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 899999999999999999999999999994 4 99999999999875
No 105
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.18 E-value=1.7e-10 Score=96.64 Aligned_cols=98 Identities=16% Similarity=0.258 Sum_probs=86.9
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEV 191 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~ 191 (505)
++++++.++.++++.|.+ +. +||++ +++++|+++.+|+... ....++.++|.+ ++.++.+++++.++++.
T Consensus 5 ~~v~~~~~~~~~~~~~~~~~~~~~~v~d----~~~~~g~v~~~~l~~~-~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~ 77 (107)
T cd04610 5 ITVSPDNTVKDVIKLIKETGHDGFPVVD----NGKVVGIVSARDLLGK-DPDETVEEIMSK--DLVVAVPEMDIMDAARV 77 (107)
T ss_pred EEECCCCcHHHHHHHHHHcCCCeeeEeE----CCEEEEEEEHHHhhcc-CccccHHHhCCC--CCeEECCCCCHHHHHHH
Confidence 788999999999999977 55 88887 5899999999998643 234568899987 88999999999999999
Q ss_pred HHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 192 LEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 192 l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
|.+++...+||+|+ |+++|+||..|+++
T Consensus 78 ~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 78 MFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred HHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 99999999999998 99999999999875
No 106
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.17 E-value=1.1e-10 Score=102.37 Aligned_cols=100 Identities=17% Similarity=0.311 Sum_probs=87.2
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc--c---cc--------------------ccc
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS--D---NK--------------------VKI 166 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~--~---~~--------------------~~v 166 (505)
+++++++++.++.+.|.+ ++ +||+|+ +++++|+++..|+.... . .. .++
T Consensus 4 ~~v~~~~~l~~~~~~~~~~~~~~~~V~d~---~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (132)
T cd04636 4 ITVKKDDTLRDVVEILLTGKISGVPVVDN---EGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKV 80 (132)
T ss_pred eEeCCCCcHHHHHHHHHHhCCCccceECC---CCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCH
Confidence 789999999999999987 65 999997 79999999999985211 1 11 178
Q ss_pred ccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 167 FDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 167 ~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
.++|.+ ++.++.+++++.+++++|.+.+.+.+||+|+|+++|+||++|+++
T Consensus 81 ~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~iGvit~~dl~~ 131 (132)
T cd04636 81 EEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDDGKLVGIISRGDIIR 131 (132)
T ss_pred HHhccC--CceEECCCCcHHHHHHHHHHCCCCeeEEEECCEEEEEEEHHHhhc
Confidence 889987 899999999999999999999999999998899999999999875
No 107
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.17 E-value=1.8e-10 Score=97.27 Aligned_cols=99 Identities=20% Similarity=0.366 Sum_probs=87.0
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccc--cc---ccccccccccccCCCceEecCCCCHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWEN--LS---DNKVKIFDYMRDCSSNVSVPANYDLG 186 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~--~~---~~~~~v~~im~~~~~~~~v~~~~~l~ 186 (505)
.+++++.++.++.+.|.+ ++ +||++ +++++|+++.+|+.. .. ....++.++|.. +++++++++++.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~i~V~~----~~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~l~ 77 (111)
T cd04800 4 VTCSPDTTIREAARLMTEHRVSSLLVVD----DGRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTA--PPITIPPDATVF 77 (111)
T ss_pred EEECCCCcHHHHHHHHHHcCCCeEEEEE----CCEEEEEEEhHHHHHHHhccCCCccCCHHHHhCC--CCeEECCCCcHH
Confidence 788999999999999977 65 89998 589999999999862 11 123578899988 899999999999
Q ss_pred HHHHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 187 QIDEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 187 ~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
++++.|.+++...+||+++|+++|++|++|+++
T Consensus 78 ~~~~~~~~~~~~~~~Vv~~~~~~Giit~~di~~ 110 (111)
T cd04800 78 EALLLMLERGIHHLPVVDDGRLVGVISATDLLR 110 (111)
T ss_pred HHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhc
Confidence 999999999999999998899999999999875
No 108
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.16 E-value=5.3e-11 Score=123.09 Aligned_cols=112 Identities=21% Similarity=0.246 Sum_probs=100.0
Q ss_pred cCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccc---c--cccccccccccccCCC
Q 010640 104 RRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWEN---L--SDNKVKIFDYMRDCSS 175 (505)
Q Consensus 104 ~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~---~--~~~~~~v~~im~~~~~ 175 (505)
..+.++.+| +++++..++.+|.+.|.+ |. +.++++ ++++.||||.+|++. . .+...+|.++|+. +
T Consensus 151 v~~~~~~~~--~~v~~~~~i~~aa~km~~~gv~s~v~l~~---~~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT~--p 223 (610)
T COG2905 151 VGEVKTLPA--VTVSPQASIQDAARKMKDEGVSSLVVLDD---SGPLLGIVTRKDLRSRVIADGRSKTQKVSEVMTS--P 223 (610)
T ss_pred HHHHhcCCC--cccCccCcHHHHHHHHHhcCCCeEEEEcC---CCCccceeehHHHHHHHHhcCCCcccchhhhhcc--C
Confidence 334566788 999999999999999999 87 777777 899999999999972 2 2457799999999 9
Q ss_pred ceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhc
Q 010640 176 NVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKG 222 (505)
Q Consensus 176 ~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~ 222 (505)
++++..++-+.+|+-+|.+++++++||+++|+++|+||.+||+....
T Consensus 224 ~~svd~~~~~feAml~m~r~~I~hl~V~e~gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 224 VISVDRGDFLFEAMLMMLRNRIKHLPVTEDGQPLGILTLTDILRLFS 270 (610)
T ss_pred ceeecCcchHHHHHHHHHHhCCceeeeecCCeeeEEeeHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999865
No 109
>COG0516 GuaB IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=99.16 E-value=1.5e-10 Score=106.38 Aligned_cols=166 Identities=41% Similarity=0.677 Sum_probs=138.9
Q ss_pred HHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecC
Q 010640 279 MIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADG 358 (505)
Q Consensus 279 ~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~G 358 (505)
.+.+++...+. +..++|.+...+..+..+| +.+.++.++| .+.++|++++..++...++.. ++++.+|
T Consensus 4 ~~~~~k~~~~~--ltfddVll~p~~s~v~p~~-~~vkt~i~~~--------i~l~iP~vSA~MDtVtea~mA-i~ma~~G 71 (170)
T COG0516 4 QVLKIKKARPG--LTFDDVLLLPAASDVAPAG-VDVKTGLGPG--------IGVNIPQVSAAMDTVTEARMA-IAMARDG 71 (170)
T ss_pred HHHHHHHhCCC--ceeccCcchhhHHhhccCC-CeeEecccCC--------cccCchHHHHHHHHHHHHHHh-HHHHHcC
Confidence 44556666544 7789999999999999999 8888877654 456789999999988877765 9999999
Q ss_pred CCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeee
Q 010640 359 GISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAV 438 (505)
Q Consensus 359 GI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 438 (505)
||. |+.|.++. .|++.+.... + ++|+|..+|. +||. ....++|+++..
T Consensus 72 GIG---------------Vih~nm~~--~e~~~~v~~v-----~--~~~~~~~~~~-----~~~~---~~~~~~~~~~~~ 119 (170)
T COG0516 72 GIG---------------VMHGNMLA--EESPGEYLYQ-----K--RGMGSIDAMQ-----RYFS---SVLVAQGVSGVV 119 (170)
T ss_pred CeE---------------EEeccccH--hhCCCceEEE-----E--ecCCCccccc-----cccc---cccceecccccc
Confidence 992 99999998 8888887654 2 8999988764 7777 345677877755
Q ss_pred ccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEecccccccCccCcc
Q 010640 439 ADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVHGL 497 (505)
Q Consensus 439 ~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~ 497 (505)
+++++...+..+...+++.|.|+|++++.+++.+ .+|+.++.+ |+++|++
T Consensus 120 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~~~ 169 (170)
T COG0516 120 -DKGSIKKFIPYLYGGLQSSCQYIGCRSLTLLKEN-----VRFEFRTAS---EGGVHNL 169 (170)
T ss_pred -cccchhhhhHHHHHHHHHHhhhcccHhHHHHHhc-----ccEEEEecc---ccCCccc
Confidence 9999999999999999999999999999999987 699999999 9999986
No 110
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.16 E-value=1.8e-10 Score=97.17 Aligned_cols=99 Identities=22% Similarity=0.343 Sum_probs=87.2
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc---c-cccccccccccCCCceEecCCCCHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS---D-NKVKIFDYMRDCSSNVSVPANYDLGQ 187 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~---~-~~~~v~~im~~~~~~~~v~~~~~l~~ 187 (505)
.+++++.++.++++.|.+ ++ +||++ +++++|+++.+|+.... . ...++.++|.+ +++++++++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~----~~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~l~~ 77 (111)
T cd04611 4 LTCPPDTSLAEAASRMRERRISSIVVVD----DGRPLGIVTERDILRLLASGPDLQTPVGEVMSS--PLLTVPADTSLYD 77 (111)
T ss_pred eEECCCCcHHHHHHHHHHcCCCEEEEee----CCEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCC--CceEECCCCCHHH
Confidence 678999999999999987 65 88887 58999999999986321 1 35678999988 8999999999999
Q ss_pred HHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 188 IDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 188 a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
+++.|.+.+.+.+||+|+ |+++|+||++|+++
T Consensus 78 ~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 78 ARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred HHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 999999999999999998 99999999999875
No 111
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.16 E-value=8.5e-10 Score=111.15 Aligned_cols=171 Identities=16% Similarity=0.145 Sum_probs=113.8
Q ss_pred CCccHHHHHHHHHHcC-ccEEEEeCCCCC----------chhHHHHHHHHHHhCCCceEEEc---ccCCHHHHHHHHH--
Q 010640 245 TRESDKERLEHLVKAG-VNVVVLDSSQGN----------SSFQIEMIKYAKKTYPELDVIGG---NVVTMYQAQNLIE-- 308 (505)
Q Consensus 245 ~~~~~~e~~~~lieaG-ad~I~i~~~~g~----------~~~~~~~i~~l~~~~~~~~Vi~g---~V~t~e~a~~l~~-- 308 (505)
+.+++.+.++.+.++| +|+++++.++.+ .....+.++.+++.. ++||++| ++...+.++.+..
T Consensus 103 ~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~-~~Pv~vKlsp~~~~~~~a~~~~~~~ 181 (310)
T PRK02506 103 SPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYF-TKPLGVKLPPYFDIVHFDQAAAIFN 181 (310)
T ss_pred cHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhc-CCccEEecCCCCCHHHHHHHHHHhC
Confidence 3456677777777777 999999887532 234566777777765 6898886 3333444444443
Q ss_pred -cCCCEEEEccC--Ccc-e-------ee--cccccccCcChH--HHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHH
Q 010640 309 -AGVDGLRVGMG--SGS-I-------CT--TQEVCAVGRGQA--TAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALV 371 (505)
Q Consensus 309 -aGad~I~v~~g--~g~-~-------~~--~~~~~g~g~p~~--~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~ 371 (505)
.|+++|..-+. .+- + .. .....|...|.+ .++..+++..+.. ++|||+.|||.+++|+.+.+.
T Consensus 182 ~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~ 261 (310)
T PRK02506 182 KFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHIL 261 (310)
T ss_pred cCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHH
Confidence 45555544321 111 1 00 011112222322 2455555555555 599999999999999999999
Q ss_pred hCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHH
Q 010640 372 LGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYT 451 (505)
Q Consensus 372 lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l 451 (505)
+||++||++|.++. +| -.++..+
T Consensus 262 aGA~~Vqv~ta~~~----------------------------------------------~g-----------p~~~~~i 284 (310)
T PRK02506 262 CGASMVQVGTALHK----------------------------------------------EG-----------PAVFERL 284 (310)
T ss_pred cCCCHHhhhHHHHH----------------------------------------------hC-----------hHHHHHH
Confidence 99999999998741 11 1567789
Q ss_pred HHHHHHHhhccCCCCHHHHHHh
Q 010640 452 MQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 452 ~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
..+|+..|...|.++++|++.+
T Consensus 285 ~~~L~~~l~~~g~~si~e~~G~ 306 (310)
T PRK02506 285 TKELKAIMAEKGYQSLEDFRGK 306 (310)
T ss_pred HHHHHHHHHHhCCCCHHHHhCh
Confidence 9999999999999999999865
No 112
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.16 E-value=1.5e-10 Score=98.01 Aligned_cols=99 Identities=11% Similarity=0.200 Sum_probs=86.2
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccc-c--c--cc-ccccccccccCCCceEecCCCCH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWEN-L--S--DN-KVKIFDYMRDCSSNVSVPANYDL 185 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~-~--~--~~-~~~v~~im~~~~~~~~v~~~~~l 185 (505)
++++++.++.++.+.|.+ +. +||++ +++++|+|+.+|+.. . . .. ..++.++|.+ ++.++.+++++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~~----~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~--~~~~v~~~~~l 77 (113)
T cd04587 4 ATVSPTTTVQEAAKLMREKRVSCVLVMD----GNKLVGIFTSKDIALRVVAQGLDPESTLVERVMTP--NPVCATSDTPV 77 (113)
T ss_pred eEeCCCCCHHHHHHHHHHcCCCeEEEEE----CCEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCC--CCeEEcCCCCH
Confidence 778999999999999977 54 88888 589999999999852 1 1 11 2578899987 89999999999
Q ss_pred HHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 186 GQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 186 ~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
.++++.|.+++.+++||+++ ++++|+||..|++.
T Consensus 78 ~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 78 LEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred HHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 99999999999999999998 99999999999875
No 113
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.15 E-value=1.8e-10 Score=97.12 Aligned_cols=99 Identities=20% Similarity=0.253 Sum_probs=86.8
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccccc----ccccccccccCCCceEecCCCCHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDN----KVKIFDYMRDCSSNVSVPANYDLGQ 187 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~----~~~v~~im~~~~~~~~v~~~~~l~~ 187 (505)
+.++++.++.++.+.|.+ ++ +||++ +++++|+++.+|+...... ..++.++|.+ ++.++.+++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~ 77 (111)
T cd04612 4 VTVPVDLTVDEVLALMFGERHRGYPVVD----DGRLVGIVTLADIRRVPAEGREATVLVGDVMTR--DPVTASPDETLRD 77 (111)
T ss_pred EEeCCCCcHHHHHHHHHHcCCCcceEee----CCeEEEEEEHHHHHHHHhcCcccccCHHHhccC--CCeEECCCCCHHH
Confidence 789999999999999987 65 89998 5899999999998632221 1257788988 9999999999999
Q ss_pred HHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 188 IDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 188 a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
+++.|.+++...+||+|+ |+++|+||..|+++
T Consensus 78 ~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 78 ALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred HHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 999999999999999998 99999999999875
No 114
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.15 E-value=2e-10 Score=96.81 Aligned_cols=99 Identities=20% Similarity=0.346 Sum_probs=87.0
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc---ccccccccccccCCCceEecCCCCHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS---DNKVKIFDYMRDCSSNVSVPANYDLGQI 188 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~---~~~~~v~~im~~~~~~~~v~~~~~l~~a 188 (505)
++++++.++.++.+.|.+ ++ +||++ +++++|+++.+|+.... ....++.++|.+ ++.+++++.++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~ 77 (110)
T cd04588 4 ITLNPNATLREAARLFNTHHIHGAPVVD----DGKLVGIVTLSDIAHAIARGLELAKVKDVMTK--DVITIDEDEQLYDA 77 (110)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEee----CCEEEEEEEHHHHHHHHhccccccCHHHHhcC--CceEECCCCCHHHH
Confidence 788999999999999987 66 89988 58999999999986322 122578899987 89999999999999
Q ss_pred HHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 189 DEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 189 ~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
++.|.+.+.+.+||+++ |+++|+||+.|+++
T Consensus 78 ~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 78 IRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred HHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 99999999999999998 99999999999875
No 115
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.15 E-value=1.9e-10 Score=98.51 Aligned_cols=99 Identities=21% Similarity=0.361 Sum_probs=87.2
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccc---------------cccccccccccCCCc
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSD---------------NKVKIFDYMRDCSSN 176 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~---------------~~~~v~~im~~~~~~ 176 (505)
.+++++.++.++.+.|.+ ++ +||+| +++++|+++..|+..... ...++.++|.+ ++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d----~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 77 (122)
T cd04585 4 ITVTPDTSLMEALKLMKENSIRRLPVVD----RGKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTR--DP 77 (122)
T ss_pred EEeCCCCcHHHHHHHHHhCCcceeeEec----CCeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccC--CC
Confidence 789999999999999988 65 99998 589999999999863211 12468889988 89
Q ss_pred eEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 177 VSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 177 ~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
.++++++++.++++.|.+.+...+||+|+ |+++|+||+.|+++
T Consensus 78 ~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 78 ITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred eEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 99999999999999999999999999998 99999999999976
No 116
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.14 E-value=3e-10 Score=96.09 Aligned_cols=99 Identities=18% Similarity=0.320 Sum_probs=86.3
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc---c---ccccccccccccCCCceEecCCCCH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL---S---DNKVKIFDYMRDCSSNVSVPANYDL 185 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~---~---~~~~~v~~im~~~~~~~~v~~~~~l 185 (505)
++++++.++.++.+.|.+ ++ +||+++ ++++|+++..|+... . ....++.++|.+ ++.++.+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l 77 (112)
T cd04802 4 ITVDPDTTVYEAANIMTENNIGRLIVVDN----EKPVGIITERDLVKKVVSRNLKPREVPVGEVMST--PLITIDPNASL 77 (112)
T ss_pred EEECCCCCHHHHHHHHHHCCCCEEEEEEC----CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCC--CcEEECCCCCH
Confidence 778999999999999987 65 899985 499999999998631 1 134578899987 89999999999
Q ss_pred HHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 186 GQIDEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 186 ~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
.++++.|.+++...+||+|+++++|+||+.|+++
T Consensus 78 ~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~di~~ 111 (112)
T cd04802 78 NEAAKLMAKHGIKRLPVVDDDELVGIVTTTDIVM 111 (112)
T ss_pred HHHHHHHHHcCCCeeEEeeCCEEEEEEEhhhhhc
Confidence 9999999999999999998889999999999875
No 117
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.14 E-value=1.8e-10 Score=114.90 Aligned_cols=126 Identities=14% Similarity=0.142 Sum_probs=100.8
Q ss_pred HHHHHHHhhh-----ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccc---
Q 010640 93 DQARLVVSAK-----SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSD--- 161 (505)
Q Consensus 93 ~~~~~v~~v~-----~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~--- 161 (505)
.+...+..+. .+.++|+...+.+++++++++.++.+.+.+ ++ +||++++ .++++|+|+.+|+.....
T Consensus 53 ~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~--~d~iiGiv~~kDll~~~~~~~ 130 (292)
T PRK15094 53 DTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED--KDHIEGILMAKDLLPFMRSDA 130 (292)
T ss_pred HHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCC--CCcEEEEEEHHHHHhHhhccC
Confidence 3445555553 344577763233899999999999999988 76 9999861 378999999999963211
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcC
Q 010640 162 NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGY 223 (505)
Q Consensus 162 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~ 223 (505)
....+.++|++ +.++++++++.++++.|++++.+.+||+|+ |.++|+||++||++.+..
T Consensus 131 ~~~~l~~l~r~---~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivG 190 (292)
T PRK15094 131 EAFSMDKVLRQ---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVG 190 (292)
T ss_pred CcCCHHHHcCC---CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhC
Confidence 23347888874 558999999999999999999999999999 999999999999998754
No 118
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.14 E-value=2.7e-10 Score=96.41 Aligned_cols=99 Identities=24% Similarity=0.349 Sum_probs=86.2
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc-----ccccc-ccccccccCCCceEecCCCCH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL-----SDNKV-KIFDYMRDCSSNVSVPANYDL 185 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~-----~~~~~-~v~~im~~~~~~~~v~~~~~l 185 (505)
++++++.++.++.+.|.+ ++ +||++ +++++|+++..|+... ..... ++.++|.+ .+.++.+++++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~v~~----~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~ 77 (113)
T cd04622 4 VTVSPDDTIREAARLMREHDVGALPVCE----NDRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTR--GVVTVTEDDDV 77 (113)
T ss_pred EEECCCCcHHHHHHHHHHcCCCEEEEee----CCEEEEEEEhHHHHHHHhhccCCcccCCHHHhccC--CccEECCCCCH
Confidence 789999999999999987 65 88888 5899999999998521 11223 48999988 89999999999
Q ss_pred HHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 186 GQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 186 ~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
.++++.|.+.+...+||+|+ |+++|+||+.|+++
T Consensus 78 ~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 78 DEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred HHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999999999998 99999999999875
No 119
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.13 E-value=2.2e-10 Score=96.49 Aligned_cols=97 Identities=19% Similarity=0.357 Sum_probs=83.0
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEV 191 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~ 191 (505)
..++++.++.++.+.+.+ ++ +||++++..+++++|+|+.+|+...... +|.+ ++.++++++++.++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~------~m~~--~~~~v~~~~~l~~~~~~ 76 (105)
T cd04591 5 VLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN------YIDP--SPFTVSPRTSLEKVHQL 76 (105)
T ss_pred EEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH------hccC--CCceECCCCcHHHHHHH
Confidence 678999999999999988 65 9999851112899999999998633211 7887 89999999999999999
Q ss_pred HHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 192 LEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 192 l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
|.+++.+.+||+++|+++|+||++|+++
T Consensus 77 ~~~~~~~~~pVv~~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 77 FRKLGLRHLLVVDEGRLVGIITRKDLLK 104 (105)
T ss_pred HHHcCCCEEEEEECCeEEEEEEhhhhhc
Confidence 9999999999997799999999999876
No 120
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.13 E-value=2.8e-10 Score=97.71 Aligned_cols=99 Identities=19% Similarity=0.357 Sum_probs=86.7
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccc---------------cccccccccccCCCc
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSD---------------NKVKIFDYMRDCSSN 176 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~---------------~~~~v~~im~~~~~~ 176 (505)
+.+.++.++.++.+.|.+ ++ +||++ +++++|+++..|+..... ...++.++|.. ++
T Consensus 4 ~~i~~~~~~~~~~~~l~~~~~~~i~V~~----~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 77 (121)
T cd04633 4 ITVSPDDRVSHARRLMLDHDISRLPVIE----GGKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTR--PV 77 (121)
T ss_pred EEECCCCcHHHHHHHHHHcCCCeeEEEE----CCEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccC--Cc
Confidence 788999999999999987 65 89998 589999999999863211 13478889987 89
Q ss_pred eEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 177 VSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 177 ~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
.++.+++++.+++++|.+.+...+||+|+|+++|+||+.|+++
T Consensus 78 ~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~dl~~ 120 (121)
T cd04633 78 ITIEPDTSVSDVASLMLENNIGGLPVVDDGKLVGIVTRTDILR 120 (121)
T ss_pred eEECCCCcHHHHHHHHHHcCCCcccEEECCEEEEEEEHHHhhc
Confidence 9999999999999999999999999998899999999999875
No 121
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.12 E-value=2.5e-10 Score=96.69 Aligned_cols=100 Identities=20% Similarity=0.271 Sum_probs=87.3
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc----c-cccccccccccCCCceEecCCCCHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS----D-NKVKIFDYMRDCSSNVSVPANYDLG 186 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~----~-~~~~v~~im~~~~~~~~v~~~~~l~ 186 (505)
.+++++.++.++.+.+.+ ++ +||+++ +++++|+++.+++.... . ...++.++|.+ +..++.+++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~---~~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~~~ 79 (114)
T cd04604 5 PLVSPDTSLKDALLEMSRKGLGMTAVVDE---DGRLVGIFTDGDLRRALEKGLDILTLPVADVMTR--NPKTIDPDALAA 79 (114)
T ss_pred cccCCCCcHHHHHHHHHhcCccEEEEEcC---CCCEEEEechHHHHHHHhccCccccCCHHHhhcc--CCeEECCCCcHH
Confidence 678899999999999877 65 899987 78999999999976221 1 23479999998 889999999999
Q ss_pred HHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 187 QIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 187 ~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
++++.|.+.+...+||+++ ++++|+||+.||++
T Consensus 80 ~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 80 EALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred HHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 9999999999999999997 99999999999975
No 122
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.12 E-value=2.5e-10 Score=98.22 Aligned_cols=99 Identities=13% Similarity=0.318 Sum_probs=87.1
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccc---------------cccccccccccCCCc
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSD---------------NKVKIFDYMRDCSSN 176 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~---------------~~~~v~~im~~~~~~ 176 (505)
++++++.++.++.+.|.+ ++ +||+| +++++|+++.+|+..... ...++.++|.+ ++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~V~d----~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 77 (122)
T cd04637 4 VTVEMDDRLEEVREIFEKHKFHHLLVVE----DNELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTR--DP 77 (122)
T ss_pred eEeCCCCCHHHHHHHHHhCCCCEEEEEe----CCeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcC--CC
Confidence 789999999999999988 76 99998 589999999999853110 13468899988 89
Q ss_pred eEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 177 VSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 177 ~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
+++.+++++.++++.|.+++...+||+|+ ++++|++|+.|+++
T Consensus 78 ~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 78 ITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred eeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 99999999999999999999999999998 99999999999985
No 123
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.10 E-value=3.8e-10 Score=117.95 Aligned_cols=125 Identities=12% Similarity=0.081 Sum_probs=102.5
Q ss_pred HHHHHHHhhh-----ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc-ccc
Q 010640 93 DQARLVVSAK-----SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS-DNK 163 (505)
Q Consensus 93 ~~~~~v~~v~-----~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~-~~~ 163 (505)
++.++++.+. ...++|++..+.++++.+++++++++.+.+ ++ +||++++ .++++|+|+.+|+.... ...
T Consensus 177 ~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~--~d~ivGiv~~kDll~~~~~~~ 254 (408)
T TIGR03520 177 EEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKET--IDNITGVLYIKDLLPHLNKKN 254 (408)
T ss_pred HHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC--CCceEEEEEHHHHHhHhccCC
Confidence 3445555553 344688874444899999999999999999 88 9999863 47899999999996322 223
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 164 VKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 164 ~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
.++.++|+ ++.++++++++.++++.|++++.+..+|+|+ |.++|+||.+||++..-
T Consensus 255 ~~l~~~~~---~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeiv 311 (408)
T TIGR03520 255 FDWQSLLR---EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIV 311 (408)
T ss_pred CCHHHHcC---CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHh
Confidence 45788886 5789999999999999999999999999999 99999999999999874
No 124
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.10 E-value=3.9e-10 Score=96.72 Aligned_cols=100 Identities=19% Similarity=0.295 Sum_probs=88.0
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc--------------ccccccccccccCCCce
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS--------------DNKVKIFDYMRDCSSNV 177 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~--------------~~~~~v~~im~~~~~~~ 177 (505)
.+++++.++.++.+.|.+ ++ +||+|+ +++++|+++.+|+.... ....++.++|.+ +++
T Consensus 4 ~~~~~~~~l~~a~~~~~~~~~~~~~V~d~---~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 78 (121)
T cd04584 4 VTITPTTTIAEALELMREHKIRHLPVVDE---EGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTK--DVI 78 (121)
T ss_pred EEECCCCCHHHHHHHHHHcCCCcccEECC---CCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhC--CCe
Confidence 788999999999999987 65 999997 79999999999985211 123568899988 899
Q ss_pred EecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 178 SVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 178 ~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
++.+++++.++++.|.+.+...+||+|+|+++|++|.+|+++
T Consensus 79 ~i~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvv~~~di~~ 120 (121)
T cd04584 79 TVHPLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLLR 120 (121)
T ss_pred EECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHhhc
Confidence 999999999999999999999999998899999999999876
No 125
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.09 E-value=6.3e-10 Score=94.69 Aligned_cols=101 Identities=18% Similarity=0.279 Sum_probs=88.4
Q ss_pred cCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc--cc-cc-ccccccccCCCceEecCC
Q 010640 110 SSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS--DN-KV-KIFDYMRDCSSNVSVPAN 182 (505)
Q Consensus 110 ~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~--~~-~~-~v~~im~~~~~~~~v~~~ 182 (505)
.++ +++.++.++.++...|.+ ++ +||++ .++++|++|.+|+.... .. .. ++.++|++ +++++.++
T Consensus 7 ~~~--~~v~~~~~~~~a~~~m~~~~~~~~~v~~----~~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~--~~~~~~~~ 78 (117)
T COG0517 7 KDV--ITVKPDTSVRDALLLMSENGVSAVPVVD----DGKLVGIITERDILRALAAGGKRLLPVKEVMTK--PVVTVDPD 78 (117)
T ss_pred CCC--EEECCCCcHHHHHHHHHHcCCCEEEEee----CCEEEEEEEHHHHHHHHhccCCccccHHHhccC--CcEEECCC
Confidence 466 899999999999999999 76 88887 45899999999997432 11 22 58999998 89999999
Q ss_pred CCHHHHHHHHHH-CCCCeeEEeeC-C-eeeeEEeechhh
Q 010640 183 YDLGQIDEVLEK-NDVDFVVLEKD-G-ERLDVVTREDVE 218 (505)
Q Consensus 183 ~~l~~a~~~l~~-~~i~~lpVvd~-g-~l~GiIt~~dil 218 (505)
.++.++.+.|.+ ++++.+||+++ + +++|++|+.|++
T Consensus 79 ~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 79 TPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred CCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 999999999999 79999999999 6 999999999974
No 126
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.09 E-value=3.8e-09 Score=111.23 Aligned_cols=170 Identities=19% Similarity=0.197 Sum_probs=117.1
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCC--------------chhHHHHHHHHHHhCCCceEEEccc---CC-HHHHHHHH
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGN--------------SSFQIEMIKYAKKTYPELDVIGGNV---VT-MYQAQNLI 307 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~--------------~~~~~~~i~~l~~~~~~~~Vi~g~V---~t-~e~a~~l~ 307 (505)
.+++.+.++.+.+.|+|++.++.++.+ ...+.+.++.+++.. ++||++|-- .+ .+.++.+.
T Consensus 112 ~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~-~~Pv~vKl~p~~~~~~~~a~~~~ 190 (420)
T PRK08318 112 EEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS-RLPVIVKLTPNITDIREPARAAK 190 (420)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc-CCcEEEEcCCCcccHHHHHHHHH
Confidence 345677777777889999999876533 134566677777765 789998732 22 36678889
Q ss_pred HcCCCEEEEccCCcc---e---------ee--cccccccCcChH--HHHHHHHHHHhhc---CCcEEecCCCCCHHHHHH
Q 010640 308 EAGVDGLRVGMGSGS---I---------CT--TQEVCAVGRGQA--TAVYKVSSIAAQS---GVPVIADGGISNSGHIVK 368 (505)
Q Consensus 308 ~aGad~I~v~~g~g~---~---------~~--~~~~~g~g~p~~--~~l~~v~~~~~~~---~ipvIa~GGI~~~~di~k 368 (505)
++|+|+|.+.+.-.+ + .. .....|...|.+ .++..+++..+.. ++|||+.|||.++.|+.+
T Consensus 191 ~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e 270 (420)
T PRK08318 191 RGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAE 270 (420)
T ss_pred HCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHH
Confidence 999999986432111 0 00 011222222332 1344555554443 699999999999999999
Q ss_pred HHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHH
Q 010640 369 ALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFI 448 (505)
Q Consensus 369 al~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 448 (505)
.+.+||++||+||.+.. +| + .++
T Consensus 271 ~i~aGA~~Vqi~ta~~~----------------------------------------------~g---------p--~ii 293 (420)
T PRK08318 271 FILLGAGTVQVCTAAMQ----------------------------------------------YG---------F--RIV 293 (420)
T ss_pred HHHhCCChheeeeeecc----------------------------------------------CC---------c--hhH
Confidence 99999999999998741 11 1 456
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 449 PYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 449 ~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
.++..+|+..|...|..++.++...
T Consensus 294 ~~I~~~L~~~l~~~g~~si~e~iG~ 318 (420)
T PRK08318 294 EDMISGLSHYMDEKGFASLEDMVGL 318 (420)
T ss_pred HHHHHHHHHHHHHcCcchHHHHhcc
Confidence 6799999999999999999998854
No 127
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.08 E-value=8.2e-10 Score=92.59 Aligned_cols=99 Identities=19% Similarity=0.297 Sum_probs=86.7
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEV 191 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~ 191 (505)
.++.++.++.++++.|.+ ++ +||+++ +++++|+++.+++.... ...++.++|.. ++.++.+++++.++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~g~v~~~~l~~~~-~~~~~~~~~~~--~~~~v~~~~~l~~~~~~ 77 (106)
T cd04638 4 VYVTLPGTRDDVLELLKEYKVSGVPVVKK---SGELVGIITRKDLLRNP-EEEQLALLMTR--DPPTVSPDDDVKEAAKL 77 (106)
T ss_pred EEECCCCCHHHHHHHHHHcCCCeEEEEcC---CCcEEEEEEHHHHHhcc-ccchHHHHhcC--CCceECCCCCHHHHHHH
Confidence 678889999999999987 65 899987 79999999999986332 23467888887 89999999999999999
Q ss_pred HHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 192 LEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 192 l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
|.+.+.+.+||+|+|+++|+||.+|+++
T Consensus 78 ~~~~~~~~~~Vvd~~~~~G~it~~d~~~ 105 (106)
T cd04638 78 MVENNIRRVPVVDDGKLVGIVTVADIVR 105 (106)
T ss_pred HHHcCCCEEEEEECCEEEEEEEHHHhhc
Confidence 9999999999998899999999999875
No 128
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.07 E-value=7.2e-10 Score=127.29 Aligned_cols=167 Identities=18% Similarity=0.161 Sum_probs=123.0
Q ss_pred hhHHHHHHHHHHhCCCceEEEcccC---CHHHHHHHHHcCCCEEEEccCCcce--eecccccccCcChHHHHHHHHHHHh
Q 010640 274 SFQIEMIKYAKKTYPELDVIGGNVV---TMYQAQNLIEAGVDGLRVGMGSGSI--CTTQEVCAVGRGQATAVYKVSSIAA 348 (505)
Q Consensus 274 ~~~~~~i~~l~~~~~~~~Vi~g~V~---t~e~a~~l~~aGad~I~v~~g~g~~--~~~~~~~g~g~p~~~~l~~v~~~~~ 348 (505)
+.+...+.++|...|..||.+|-+. -..-+.-..++|+|+|.++.+.|+. .........|.|....|.++.+.+.
T Consensus 981 eDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~ 1060 (1485)
T PRK11750 981 EDLAQLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALV 1060 (1485)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHH
Confidence 4566778888888777888887442 1223334667999999997544332 2222345668899889999888776
Q ss_pred hc----CCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccccc
Q 010640 349 QS----GVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGD 424 (505)
Q Consensus 349 ~~----~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~ 424 (505)
.. ++.++++||++|+.|++||++||||.|.+||.++-+.-|- .+-.
T Consensus 1061 ~~glR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~lialGCi------------------------------~~r~ 1110 (1485)
T PRK11750 1061 ANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTGPMVALGCK------------------------------YLRI 1110 (1485)
T ss_pred hcCCCcceEEEEcCCcCCHHHHHHHHHcCCcccccchHHHHHcCCH------------------------------HHHh
Confidence 55 3899999999999999999999999999999987543331 0112
Q ss_pred ccccccccceeeeec------cC---CchhhHHHHHHHHHHHHhhccCCCCHHHH
Q 010640 425 KAKLKIAQGVVGAVA------DK---GSVLKFIPYTMQAVKQGFQDLGASSLQSA 470 (505)
Q Consensus 425 ~~~~~~~~g~~~~~~------~~---~~~~~~~~~l~~~l~~~m~~~G~~~~~~l 470 (505)
|+++.+|.|+.++.+ +. .-|.+++..+..+||..|..+|.+++.||
T Consensus 1111 Ch~~~CPvGiaTqd~~lr~~~~~~~~~~v~nf~~~~~~el~~~la~lG~~s~~el 1165 (1485)
T PRK11750 1111 CHLNNCATGVATQDEKLRKNHYHGLPEMVMNYFEFIAEETREWMAQLGVRSLEDL 1165 (1485)
T ss_pred hcCCCCCcEEeccCHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHh
Confidence 455567777766553 11 25778888999999999999999999999
No 129
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.07 E-value=3e-09 Score=106.90 Aligned_cols=138 Identities=22% Similarity=0.253 Sum_probs=93.5
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCc--------------hhHHHHHHHHHHhCCCceEEEcccCC----HHHHHHHH
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNS--------------SFQIEMIKYAKKTYPELDVIGGNVVT----MYQAQNLI 307 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~--------------~~~~~~i~~l~~~~~~~~Vi~g~V~t----~e~a~~l~ 307 (505)
.+++.+.++.+.+.|+|++.++.++.+. ..+.+.++.+++.. ++||.+|--.. .+.++.+.
T Consensus 112 ~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~Pv~vKl~~~~~~~~~~a~~~~ 190 (299)
T cd02940 112 KEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV-KIPVIAKLTPNITDIREIARAAK 190 (299)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc-CCCeEEECCCCchhHHHHHHHHH
Confidence 3456677777777799999998765332 34566777777765 78999973322 36778899
Q ss_pred HcCCCEEEEccCCcc---e--ee--------cc-cccccCcCh--HHHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHH
Q 010640 308 EAGVDGLRVGMGSGS---I--CT--------TQ-EVCAVGRGQ--ATAVYKVSSIAAQS--GVPVIADGGISNSGHIVKA 369 (505)
Q Consensus 308 ~aGad~I~v~~g~g~---~--~~--------~~-~~~g~g~p~--~~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~ka 369 (505)
++|+|+|.+.+.-.. + .. .+ ...|...|. ..++..+.+..+.. ++|||+.|||.+++|+.++
T Consensus 191 ~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~ 270 (299)
T cd02940 191 EGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEF 270 (299)
T ss_pred HcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHH
Confidence 999999987642211 0 00 01 111221121 12344445555555 6999999999999999999
Q ss_pred HHhCCCEEEeccccc
Q 010640 370 LVLGASTVMMGSFLA 384 (505)
Q Consensus 370 l~lGA~~V~~G~~f~ 384 (505)
+.+||++||+||.+.
T Consensus 271 l~aGA~~V~i~ta~~ 285 (299)
T cd02940 271 LLLGASVVQVCTAVM 285 (299)
T ss_pred HHcCCChheEceeec
Confidence 999999999999874
No 130
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.05 E-value=5.2e-10 Score=110.61 Aligned_cols=106 Identities=18% Similarity=0.178 Sum_probs=91.5
Q ss_pred hhccCCccccC-CCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc----cccccccccccc
Q 010640 101 AKSRRVPIFSS-SLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS----DNKVKIFDYMRD 172 (505)
Q Consensus 101 v~~~~~~~~~~-p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~----~~~~~v~~im~~ 172 (505)
+.+..++|..+ + .++++++++.++++.|.+ ++ +||+|+ +++++|+|+.+|++... ....++.++|.+
T Consensus 154 ~~~v~~im~~~~~--~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~---~g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~ 228 (268)
T TIGR00393 154 LVKVKDLMQTTDL--PLIAPTTSFKDALLEMSEKRLGSAIVCDE---NNQLVGVFTDGDLRRALLGGGSLKSEVRDFMTL 228 (268)
T ss_pred hhhHHHHhCCCCC--CcCCCCCcHHHHHHHHhhcCCcEEEEEeC---CCCEEEEEEcHHHHHHHhcCCcccCcHHHhCCC
Confidence 34555677667 6 889999999999999987 65 899997 89999999999986321 235679999998
Q ss_pred CCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEe
Q 010640 173 CSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVT 213 (505)
Q Consensus 173 ~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt 213 (505)
+++++.+++++.+++++|.+++...+||+|+ |+++|+|+
T Consensus 229 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 229 --GPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred --CCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 8999999999999999999999999999998 99999984
No 131
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.04 E-value=7.3e-10 Score=115.49 Aligned_cols=123 Identities=21% Similarity=0.252 Sum_probs=104.4
Q ss_pred HHHHHHHhhhccCC-----ccccCCCeeEeCCCCCHHHHHHHhcC--C-----e-EEEEeCCCCCCeEEEEEeccccccc
Q 010640 93 DQARLVVSAKSRRV-----PIFSSSLDVFKAPDGCINDANDFDGS--N-----Y-VFVTESGTRRSRILGYVTKSDWENL 159 (505)
Q Consensus 93 ~~~~~v~~v~~~~~-----~~~~~p~~~~v~~~~tv~~a~~~~~~--~-----~-~pVvd~~~~~g~lvGivt~~Dl~~~ 159 (505)
+++..+++...+.+ .|+.+. ++++++.|+++++..+++ + + ++|+|+ +++++|+++.+++...
T Consensus 118 ~~r~~v~~~l~y~e~taG~~Mt~e~--v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~---~~~L~Gvvsl~~Ll~a 192 (451)
T COG2239 118 EERARVRQLLSYPEDTAGRIMTTEF--VTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE---KGKLLGVVSLRDLLTA 192 (451)
T ss_pred HHHHHHHHhcCCChhhhhccceeee--EEeccCcCHHHHHHHHHHhcccccccceEEEECC---ccceEEEeeHHHHhcC
Confidence 33455555555543 566666 999999999999999874 1 2 899998 8999999999999643
Q ss_pred cccccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcC
Q 010640 160 SDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGY 223 (505)
Q Consensus 160 ~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~ 223 (505)
+.+.++.++|.+ .++++.++++.+++.++++++++-.+||||+ ++++|+||..|++.....
T Consensus 193 -~~~~~i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~e 254 (451)
T COG2239 193 -EPDELLKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEE 254 (451)
T ss_pred -CcHhHHHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHH
Confidence 456789999999 8999999999999999999999999999999 999999999999987753
No 132
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.04 E-value=4.2e-09 Score=101.19 Aligned_cols=127 Identities=21% Similarity=0.312 Sum_probs=93.4
Q ss_pred HHHHHHHHHcCccEEEEeCCCCC-c--hhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeec
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGN-S--SFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTT 326 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~-~--~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~ 326 (505)
.+.++.+.++|+|++.++..... + ....+.++.+++. +++++++ ++.+.++++.+.++|+|++.+..++ .. +
T Consensus 78 ~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~-~v~t~ee~~~a~~~G~d~i~~~~~g-~t--~ 152 (221)
T PRK01130 78 LKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMA-DCSTLEEGLAAQKLGFDFIGTTLSG-YT--E 152 (221)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEE-eCCCHHHHHHHHHcCCCEEEcCCce-ee--c
Confidence 35688899999999988775432 1 4556778888774 4788876 7889999999999999999764321 11 1
Q ss_pred ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
. ......+....+.++++. .++||++.|||.++.|+.+++++||++|++|+.|..
T Consensus 153 ~-~~~~~~~~~~~i~~i~~~---~~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~ 207 (221)
T PRK01130 153 E-TKKPEEPDFALLKELLKA---VGCPVIAEGRINTPEQAKKALELGAHAVVVGGAITR 207 (221)
T ss_pred C-CCCCCCcCHHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcC
Confidence 0 011122344555555443 469999999999999999999999999999999864
No 133
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.03 E-value=8.9e-10 Score=92.57 Aligned_cols=97 Identities=20% Similarity=0.345 Sum_probs=82.5
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc--c---cccccccccccCCCceEecCCCCHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS--D---NKVKIFDYMRDCSSNVSVPANYDLG 186 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~--~---~~~~v~~im~~~~~~~~v~~~~~l~ 186 (505)
++++++.++.++.+.|.+ ++ +||++ +++++|++|.+|+.... . ...++.++|.+ ++.++++++++.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~~----~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~ 77 (110)
T cd04609 4 VSVAPDDTVSQAIERMREYGVSQLPVVD----DGRVVGSIDESDLLDALIEGKAKFSLPVREVMGE--PLPTVDPDAPIE 77 (110)
T ss_pred EEECCCCcHHHHHHHHHHcCCceeeEee----CCeeEEEEeHHHHHHHHhccccccCcCHHHHhcC--CCceeCCCCcHH
Confidence 788999999999999987 65 89998 58999999999986321 1 13578899987 889999999999
Q ss_pred HHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 187 QIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 187 ~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
+++++|.+ . ..+||+++ |+++|+||++|+++
T Consensus 78 ~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 78 ELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred HHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence 99999988 3 34899988 99999999999875
No 134
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.02 E-value=1e-08 Score=109.75 Aligned_cols=195 Identities=19% Similarity=0.202 Sum_probs=127.3
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCC-CCcceEEEe
Q 010640 165 KIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGP-DGKWMVGAA 242 (505)
Q Consensus 165 ~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~-~~~l~v~a~ 242 (505)
.+.++|.+ +++++++++++.+++++|.+++...+||+|+ ++++|+||.+|+......... ..+. ..+-.+.+.
T Consensus 88 ~~~dim~~--~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~~~~~---V~dim~~~~~v~v~ 162 (486)
T PRK05567 88 RSESGVVT--DPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETDLSQP---VSEVMTKERLVTVP 162 (486)
T ss_pred hhhhcccC--CCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcccCCCc---HHHHcCCCCCEEEC
Confidence 35677887 9999999999999999999999999999999 999999999999754322111 1111 101112222
Q ss_pred ecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHH---HHHHHHHHhC----CCceEEEccc-----CCHHHHHHHHHcC
Q 010640 243 IGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQI---EMIKYAKKTY----PELDVIGGNV-----VTMYQAQNLIEAG 310 (505)
Q Consensus 243 i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~---~~i~~l~~~~----~~~~Vi~g~V-----~t~e~a~~l~~aG 310 (505)
. .....+.++.+.+.+.+.+.+...+|...+++ +.++.+.... ....+.++.. .+.+.++.+.++|
T Consensus 163 ~--~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~~ag 240 (486)
T PRK05567 163 E--GTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERAEALVEAG 240 (486)
T ss_pred C--CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeecccCcchHHHHHHHHHhC
Confidence 2 23356777888888988887765555432222 2222211100 0113333322 2468899999999
Q ss_pred CCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 311 VDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQS-GVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 311 ad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
+|.+.+... .++....+..+..++ .+. ++|||+ |++.|..++..+..+||++|.+|
T Consensus 241 vdvivvD~a----------~g~~~~vl~~i~~i~---~~~p~~~vi~-g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 241 VDVLVVDTA----------HGHSEGVLDRVREIK---AKYPDVQIIA-GNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred CCEEEEECC----------CCcchhHHHHHHHHH---hhCCCCCEEE-eccCCHHHHHHHHHcCCCEEEEC
Confidence 998866411 112122334444443 334 689998 99999999999999999999875
No 135
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.01 E-value=1.4e-09 Score=96.87 Aligned_cols=99 Identities=22% Similarity=0.365 Sum_probs=86.3
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc---c---------------------------
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS---D--------------------------- 161 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~---~--------------------------- 161 (505)
+++++++++.++.+.|.+ ++ +||++ +++++|+++.+|+.... .
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~Vvd----~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (143)
T cd04634 4 ITCNADDTISDAARLLRENKISGAPVLD----GGKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEET 79 (143)
T ss_pred EEecCCCCHHHHHHHHHHcCCCcceEeE----CCeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHH
Confidence 789999999999999988 76 99998 48999999999985211 0
Q ss_pred -------cccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 162 -------NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 162 -------~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
...++.++|.+ ++.++++++++.++++.|.+.+...+||+++|+++|+||.+|+++
T Consensus 80 ~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~~Gvvt~~dl~~ 142 (143)
T cd04634 80 KRALTDAGKMKVRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVEDGRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHHhcCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhhc
Confidence 23467788988 899999999999999999999999999998899999999999875
No 136
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.00 E-value=1.7e-09 Score=90.44 Aligned_cols=100 Identities=24% Similarity=0.329 Sum_probs=86.0
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccc--cc---cccccccccCCCceEecCCCCHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSD--NK---VKIFDYMRDCSSNVSVPANYDLG 186 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~--~~---~~v~~im~~~~~~~~v~~~~~l~ 186 (505)
.+++++.++.++.+.|.+ ++ +||+++ +++++|+++.+|+..... .. ..+.++|.. ++.++++++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 78 (113)
T cd02205 4 VTVSPDDTVAEALRLMLEHGISGLPVVDD---DGRLVGIVTERDLLRALAEGGLDPLVTVGDVMTR--DVVTVSPDTSLE 78 (113)
T ss_pred eEecCCCCHHHHHHHHHhcCCceEEEECC---CCCEEEEEeHHHHHHHHHhccCCccccHHHHhcC--CceecCCCcCHH
Confidence 678999999999999987 55 999997 799999999999863221 11 126678887 899999999999
Q ss_pred HHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 187 QIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 187 ~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
++++.|.+.+...+||+|+ ++++|++|++|+++
T Consensus 79 ~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 79 EAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 9999999999999999999 99999999999875
No 137
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.00 E-value=7.1e-09 Score=103.74 Aligned_cols=139 Identities=22% Similarity=0.272 Sum_probs=95.4
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCc----------hhHHHHHHHHHHhCCCceEEEc--ccCC----HHHHHHHHHc
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNS----------SFQIEMIKYAKKTYPELDVIGG--NVVT----MYQAQNLIEA 309 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~----------~~~~~~i~~l~~~~~~~~Vi~g--~V~t----~e~a~~l~~a 309 (505)
.++..+.++.+.+.|+|++.++.++.+. ....+.++.+++.+ +.||++| ...+ .+.++.+.++
T Consensus 110 ~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~~~ 188 (289)
T cd02810 110 KEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAERA 188 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 3567778888888899999998765321 34567788888876 7888886 3334 5667888999
Q ss_pred CCCEEEEccCCcc-eeec--------ccccccCcChH--HHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCE
Q 010640 310 GVDGLRVGMGSGS-ICTT--------QEVCAVGRGQA--TAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGAST 376 (505)
Q Consensus 310 Gad~I~v~~g~g~-~~~~--------~~~~g~g~p~~--~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~ 376 (505)
|+|+|.+.++-.. .... ....+...+.+ ..+..+.+..+.. ++|||+.|||.++.|+.+++.+|||+
T Consensus 189 Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~ 268 (289)
T cd02810 189 GADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASA 268 (289)
T ss_pred CCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccH
Confidence 9999998643211 1000 00111111111 1334444544445 79999999999999999999999999
Q ss_pred EEecccccC
Q 010640 377 VMMGSFLAG 385 (505)
Q Consensus 377 V~~G~~f~~ 385 (505)
|++|+.++.
T Consensus 269 V~vg~a~~~ 277 (289)
T cd02810 269 VQVATALMW 277 (289)
T ss_pred heEcHHHHh
Confidence 999999863
No 138
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=98.99 E-value=1.1e-08 Score=95.94 Aligned_cols=110 Identities=19% Similarity=0.345 Sum_probs=93.0
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCccee
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSIC 324 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~ 324 (505)
+.++..+.++.+.+.|+++++++... ....+.++.+++.+|++.|.+|+|.|.++++.+.++|+++++ + ++
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~~t---~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fiv-s-----P~ 88 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTLRT---PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIV-S-----PG 88 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCC---ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEE-C-----CC
Confidence 34567889999999999999997754 356788999999998999999999999999999999999993 2 01
Q ss_pred ecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 325 TTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 325 ~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
. -.++.+.|++.++|+++ |+.|+.++.+|+.+||+.|-+
T Consensus 89 ~--------------~~~v~~~~~~~~i~~iP--G~~TptEi~~A~~~Ga~~vKl 127 (204)
T TIGR01182 89 L--------------TPELAKHAQDHGIPIIP--GVATPSEIMLALELGITALKL 127 (204)
T ss_pred C--------------CHHHHHHHHHcCCcEEC--CCCCHHHHHHHHHCCCCEEEE
Confidence 1 12566778888999999 999999999999999999864
No 139
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.96 E-value=2.6e-09 Score=91.38 Aligned_cols=99 Identities=20% Similarity=0.248 Sum_probs=84.0
Q ss_pred eEeCCCCCHHHHHHHhcC-C-e--EEEEeCCCCCCeEEEEEeccccccc-cc-------cccccccccccCCCceEecCC
Q 010640 115 VFKAPDGCINDANDFDGS-N-Y--VFVTESGTRRSRILGYVTKSDWENL-SD-------NKVKIFDYMRDCSSNVSVPAN 182 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~-~--~pVvd~~~~~g~lvGivt~~Dl~~~-~~-------~~~~v~~im~~~~~~~~v~~~ 182 (505)
.++++++++.++.+.|.. + + +||+| +++++|+++.+|+... .. ...++.++|.+ ++.++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd----~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~ 77 (119)
T cd04598 4 PTVSPDTTVNDVLERFERDPDLSALAVVD----DGRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDP--DPLIVEAD 77 (119)
T ss_pred CccCCCCcHHHHHHHHHhCCCccEEEEEE----CCeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCC--CcEEecCC
Confidence 678999999999999977 6 6 89998 4899999999998621 11 34579999988 89999999
Q ss_pred CCHHHHHHHHHHCCCC---eeEEeeC-CeeeeEEeechhhh
Q 010640 183 YDLGQIDEVLEKNDVD---FVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 183 ~~l~~a~~~l~~~~i~---~lpVvd~-g~l~GiIt~~dil~ 219 (505)
+++.++++.|.+++.. ..||+++ |+++|+||..|+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 78 TPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred CCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 9999999999998864 4478888 99999999999875
No 140
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.93 E-value=2.9e-08 Score=92.86 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=92.6
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCccee
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSIC 324 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~ 324 (505)
+.++..+.++.+++.|+.++++..... ...+.++.+++.+|++.|.+|+|.+.++++.+.++|+++++-. +
T Consensus 14 ~~~~a~~ia~al~~gGi~~iEit~~tp---~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP------~ 84 (201)
T PRK06015 14 DVEHAVPLARALAAGGLPAIEITLRTP---AALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSP------G 84 (201)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCc---cHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECC------C
Confidence 345677889999999999999977644 4678888899889889999999999999999999999999321 1
Q ss_pred ecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 325 TTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 325 ~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
+ -.++.+.+++.++|++. |+.|+.++..|+.+||+.|-+
T Consensus 85 ~--------------~~~vi~~a~~~~i~~iP--G~~TptEi~~A~~~Ga~~vK~ 123 (201)
T PRK06015 85 T--------------TQELLAAANDSDVPLLP--GAATPSEVMALREEGYTVLKF 123 (201)
T ss_pred C--------------CHHHHHHHHHcCCCEeC--CCCCHHHHHHHHHCCCCEEEE
Confidence 1 12556778888999999 999999999999999999864
No 141
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.92 E-value=4.4e-08 Score=93.15 Aligned_cols=110 Identities=18% Similarity=0.173 Sum_probs=87.7
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHH----HhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCC
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAK----KTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGS 320 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~----~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~ 320 (505)
+.++..+.++.+++.|+.++++....... .+.++.++ +.+|++.|.+|+|.|.++++.+.++|+++++-.
T Consensus 25 ~~~~a~~~~~al~~gGi~~iEiT~~tp~a---~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP--- 98 (222)
T PRK07114 25 DVEVAKKVIKACYDGGARVFEFTNRGDFA---HEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVTP--- 98 (222)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCcH---HHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEECC---
Confidence 34557788999999999999998765443 44455453 556778999999999999999999999999421
Q ss_pred cceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 321 GSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 321 g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
++ -.++.+.+++.++|++. |+.|+.++..|+.+||+.|-+
T Consensus 99 ---~~--------------~~~v~~~~~~~~i~~iP--G~~TpsEi~~A~~~Ga~~vKl 138 (222)
T PRK07114 99 ---LF--------------NPDIAKVCNRRKVPYSP--GCGSLSEIGYAEELGCEIVKL 138 (222)
T ss_pred ---CC--------------CHHHHHHHHHcCCCEeC--CCCCHHHHHHHHHCCCCEEEE
Confidence 11 12556777788999999 999999999999999999854
No 142
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.92 E-value=3.9e-08 Score=104.20 Aligned_cols=194 Identities=14% Similarity=0.214 Sum_probs=123.8
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCC----eeeeEEeechhhhhhcCCCCCCCccC-CCCcceE
Q 010640 165 KIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDG----ERLDVVTREDVERLKGYPNLGKGTVG-PDGKWMV 239 (505)
Q Consensus 165 ~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g----~l~GiIt~~dil~~~~~~~~~~~~~d-~~~~l~v 239 (505)
...+.|.+ +++++.++.++.+++++|.++++..+||+|++ +++|+||.+|++........ ..+ ....-.+
T Consensus 81 ~~~~~~~~--~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~~~~~---V~dvm~~~~~~ 155 (450)
T TIGR01302 81 RAENGIIS--DPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKDKGKP---VSEVMTREEVI 155 (450)
T ss_pred cccCceec--CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhcCCCC---HHHhhCCCCCE
Confidence 35567777 89999999999999999999999999999874 89999999999864321110 111 0100111
Q ss_pred EEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhH---HHHHHHHHHhCC------CceEEE-cccC----CHHHHHH
Q 010640 240 GAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQ---IEMIKYAKKTYP------ELDVIG-GNVV----TMYQAQN 305 (505)
Q Consensus 240 ~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~---~~~i~~l~~~~~------~~~Vi~-g~V~----t~e~a~~ 305 (505)
.+. ......+.++.+.+.+...+.+....|...++ .+.++.+ .+| +..+++ +.+. +.+.+..
T Consensus 156 ~V~--~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~--~~~~~~~d~~g~l~V~aav~~~~~~~~r~~~ 231 (450)
T TIGR01302 156 TVP--EGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR--KFPHASKDENGRLIVGAAVGTREFDKERAEA 231 (450)
T ss_pred EEC--CCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc--cCCcceEeCCCCEEEEEEecCchhHHHHHHH
Confidence 112 22345667777788888766554443332111 1222211 111 123333 3433 4678899
Q ss_pred HHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 306 LIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 306 l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
+.++|+|.|.+...- |+.......+..+++.. -++||++ |++.|..++..++.+|||++.+|
T Consensus 232 L~~aG~d~I~vd~a~----------g~~~~~~~~i~~i~~~~--~~~~vi~-G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 232 LVKAGVDVIVIDSSH----------GHSIYVIDSIKEIKKTY--PDLDIIA-GNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred HHHhCCCEEEEECCC----------CcHhHHHHHHHHHHHhC--CCCCEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 999999999885211 12222334444443321 2689999 99999999999999999999766
No 143
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=98.92 E-value=2.7e-08 Score=92.44 Aligned_cols=109 Identities=26% Similarity=0.344 Sum_probs=91.9
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCccee
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSIC 324 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~ 324 (505)
..++....++.+++.|.++++|..... ...+.|+.+++.+|++.|.+|+|.++++++.+.++|+++++-- .
T Consensus 23 ~~e~a~~~a~Ali~gGi~~IEITl~sp---~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVsP------~ 93 (211)
T COG0800 23 DVEEALPLAKALIEGGIPAIEITLRTP---AALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVSP------G 93 (211)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCC---CHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEECC------C
Confidence 355677889999999999999977544 4578899999999989999999999999999999999999321 1
Q ss_pred ecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 325 TTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 325 ~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
.+ .++.+.|..+++|++. |+.|+.++..|+.+|++.+-
T Consensus 94 ~~--------------~ev~~~a~~~~ip~~P--G~~TptEi~~Ale~G~~~lK 131 (211)
T COG0800 94 LN--------------PEVAKAANRYGIPYIP--GVATPTEIMAALELGASALK 131 (211)
T ss_pred CC--------------HHHHHHHHhCCCcccC--CCCCHHHHHHHHHcChhhee
Confidence 11 2566778888999999 99999999999999999774
No 144
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.91 E-value=4.6e-08 Score=104.44 Aligned_cols=193 Identities=13% Similarity=0.102 Sum_probs=120.7
Q ss_pred cccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC----CeeeeEEeechhhhhhcCCCCCCCccC-CCCc-ceEEE
Q 010640 168 DYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD----GERLDVVTREDVERLKGYPNLGKGTVG-PDGK-WMVGA 241 (505)
Q Consensus 168 ~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~----g~l~GiIt~~dil~~~~~~~~~~~~~d-~~~~-l~v~a 241 (505)
..|.+ +++++.+++++.+++++|.++++..+||+|+ ++++|+||..|+......... ..+ .... -.+
T Consensus 104 ~gmi~--dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~~~~~~---V~eIMt~~~~lv-- 176 (505)
T PLN02274 104 VGFVS--DPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVNDRETK---LSEVMTSDDDLV-- 176 (505)
T ss_pred ccccC--CCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhccccCCc---HHHHhccCCCcE--
Confidence 34666 8999999999999999999999999999986 699999999999653211000 000 0000 011
Q ss_pred eecCCccHHHHHHHHHHcCccEEEEeCCCCCchh---HHHHHHHHHHhC-------CCceEEEcc-c----CCHHHHHHH
Q 010640 242 AIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSF---QIEMIKYAKKTY-------PELDVIGGN-V----VTMYQAQNL 306 (505)
Q Consensus 242 ~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~---~~~~i~~l~~~~-------~~~~Vi~g~-V----~t~e~a~~l 306 (505)
.+.......+.++.+.+.+...+.+-...+...+ ..+.++.+.... ....+++|. | ...+.++.|
T Consensus 177 tv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~~~~r~~~l 256 (505)
T PLN02274 177 TAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESDKERLEHL 256 (505)
T ss_pred EECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCccHHHHHHHH
Confidence 1222334667777788888877755333332111 122222221100 012344432 2 246889999
Q ss_pred HHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 307 IEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 307 ~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
.++|+|+|.+... .|+..-+...+..+++... +++||+ |+|.|.++...|+.+|||+|.+|
T Consensus 257 ~~ag~d~i~iD~~----------~g~~~~~~~~i~~ik~~~p--~~~vi~-g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 257 VKAGVDVVVLDSS----------QGDSIYQLEMIKYIKKTYP--ELDVIG-GNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHcCCCEEEEeCC----------CCCcHHHHHHHHHHHHhCC--CCcEEE-ecCCCHHHHHHHHHcCcCEEEEC
Confidence 9999999988631 1222223344544444221 477777 88999999999999999999775
No 145
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.90 E-value=3.4e-08 Score=94.77 Aligned_cols=128 Identities=24% Similarity=0.387 Sum_probs=93.7
Q ss_pred HHHHHHHHHcCccEEEEeCCCCC-c--hhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeec
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGN-S--SFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTT 326 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~-~--~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~ 326 (505)
.+.++.+.++|++++.++..... + ....+.++.+++.. +.++++ ++.|.+++..+.++|+|++.+..++ .. .
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv-~v~t~~ea~~a~~~G~d~i~~~~~g-~t--~ 156 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMA-DISTLEEALNAAKLGFDIIGTTLSG-YT--E 156 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEE-ECCCHHHHHHHHHcCCCEEEccCcc-cc--c
Confidence 45788899999999988765421 1 25667788888875 577777 6889999999999999998664221 10 0
Q ss_pred ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
... ....+....+..+++. .++||++.|||.++.|+.+++.+|||+|++|+.|...
T Consensus 157 ~~~-~~~~~~~~~l~~i~~~---~~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~~ 212 (219)
T cd04729 157 ETA-KTEDPDFELLKELRKA---LGIPVIAEGRINSPEQAAKALELGADAVVVGSAITRP 212 (219)
T ss_pred ccc-CCCCCCHHHHHHHHHh---cCCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhCh
Confidence 000 1112445555555443 4699999999999999999999999999999998643
No 146
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.90 E-value=2.5e-08 Score=102.02 Aligned_cols=135 Identities=19% Similarity=0.127 Sum_probs=87.2
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCc---------hhHHHHHHHHHHhCC----CceEEEccc---C---CHHHHHHHHHc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNS---------SFQIEMIKYAKKTYP----ELDVIGGNV---V---TMYQAQNLIEA 309 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~---------~~~~~~i~~l~~~~~----~~~Vi~g~V---~---t~e~a~~l~~a 309 (505)
+.+.++.+. .++|+++++.++.+. ....+.++.+++... ++||++|-- . ..+.++.+.++
T Consensus 159 ~~~~~~~~~-~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~ 237 (344)
T PRK05286 159 YLICLEKLY-PYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEH 237 (344)
T ss_pred HHHHHHHHH-hhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHh
Confidence 344444432 259999998765432 345677788888763 289988622 2 24567888899
Q ss_pred CCCEEEEccCCccee-ec-----ccccccCcChH--HHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 310 GVDGLRVGMGSGSIC-TT-----QEVCAVGRGQA--TAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 310 Gad~I~v~~g~g~~~-~~-----~~~~g~g~p~~--~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
|+|+|.+.++--... .. ....+...+.. .++..+.+..+.. ++|||+.|||.+++|+.+.+.+|||+||+
T Consensus 238 Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v 317 (344)
T PRK05286 238 GIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQI 317 (344)
T ss_pred CCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHH
Confidence 999999874321100 00 00111111221 2333444444444 69999999999999999999999999999
Q ss_pred ccccc
Q 010640 380 GSFLA 384 (505)
Q Consensus 380 G~~f~ 384 (505)
||.++
T Consensus 318 ~~~~~ 322 (344)
T PRK05286 318 YSGLI 322 (344)
T ss_pred HHHHH
Confidence 99874
No 147
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.89 E-value=3.8e-08 Score=104.35 Aligned_cols=196 Identities=22% Similarity=0.274 Sum_probs=125.1
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccC-CCCcceEE
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVG-PDGKWMVG 240 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d-~~~~l~v~ 240 (505)
..++.++|.+ +++++++++++.++++.|.++++..+||+|+ ++++|+||..|+....... . ..+ .... .+.
T Consensus 88 ~VKv~~iMi~--~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~~~~-~---V~diMt~~-~it 160 (479)
T PRK07807 88 WVKSRDLVFD--TPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVDRFT-Q---VRDVMSTD-LVT 160 (479)
T ss_pred hccccccccc--CCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCccCC-C---HHHhccCC-ceE
Confidence 3456788988 9999999999999999999999999999998 9999999999986432110 0 111 1111 111
Q ss_pred EeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHh-CCCc-----eEEEcc---c--CCHHHHHHHHHc
Q 010640 241 AAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKT-YPEL-----DVIGGN---V--VTMYQAQNLIEA 309 (505)
Q Consensus 241 a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~-~~~~-----~Vi~g~---V--~t~e~a~~l~~a 309 (505)
+.......+.++.+.+.+...+.+....+...+++..-.-++.. ++.. ...++. + ...+.+..+.++
T Consensus 161 --V~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~~~~g~l~V~aav~~~~~~~~~a~~Lv~a 238 (479)
T PRK07807 161 --LPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAVDAAGRLRVAAAVGINGDVAAKARALLEA 238 (479)
T ss_pred --ECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchhhhhhccchHhhhccChhHHHHHHHHHHh
Confidence 12233456777778888888775533233221222111111111 1110 111211 1 235788999999
Q ss_pred CCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 310 GVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 310 Gad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
|+|.|.+.. ..+++....+.+.++++... +++||+ |.|.|.+....++.+|||+|-+|
T Consensus 239 Gvd~i~~D~----------a~~~~~~~~~~i~~ik~~~p--~~~v~a-gnv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 239 GVDVLVVDT----------AHGHQEKMLEALRAVRALDP--GVPIVA-GNVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred CCCEEEEec----------cCCccHHHHHHHHHHHHHCC--CCeEEe-eccCCHHHHHHHHHcCCCEEEEC
Confidence 999998752 12233445555655555332 478887 99999999999999999998644
No 148
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=98.89 E-value=3e-08 Score=92.48 Aligned_cols=110 Identities=27% Similarity=0.350 Sum_probs=87.4
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCccee
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSIC 324 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~ 324 (505)
+.++..+.++.+.+.|+.++++..... ...+.++.+++.+|++.|.+|+|.+.++++.+.++|+++++-.
T Consensus 18 ~~~~a~~~~~al~~gGi~~iEiT~~t~---~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP------- 87 (196)
T PF01081_consen 18 DPEDAVPIAEALIEGGIRAIEITLRTP---NALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSP------- 87 (196)
T ss_dssp SGGGHHHHHHHHHHTT--EEEEETTST---THHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEES-------
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCc---cHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECC-------
Confidence 356688999999999999999987643 4678888899999999999999999999999999999999421
Q ss_pred ecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 325 TTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 325 ~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
. .-.++.+.|++.++|++. |+.|+.++..|+.+||+.|-+
T Consensus 88 -----------~--~~~~v~~~~~~~~i~~iP--G~~TptEi~~A~~~G~~~vK~ 127 (196)
T PF01081_consen 88 -----------G--FDPEVIEYAREYGIPYIP--GVMTPTEIMQALEAGADIVKL 127 (196)
T ss_dssp -----------S----HHHHHHHHHHTSEEEE--EESSHHHHHHHHHTT-SEEEE
T ss_pred -----------C--CCHHHHHHHHHcCCcccC--CcCCHHHHHHHHHCCCCEEEE
Confidence 1 113566777888999999 999999999999999998864
No 149
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.89 E-value=5.1e-08 Score=92.36 Aligned_cols=109 Identities=24% Similarity=0.275 Sum_probs=91.4
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
.++..+.++.+.+.|++++++..... ...+.++.+++.+|++.|.+|+|.+.++++.+.++|++++....
T Consensus 26 ~~~a~~i~~al~~~Gi~~iEitl~~~---~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~------- 95 (212)
T PRK05718 26 LEDAVPLAKALVAGGLPVLEVTLRTP---AALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPG------- 95 (212)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCc---cHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCC-------
Confidence 45577889999999999999975433 46788899999999999999999999999999999999995421
Q ss_pred cccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
+. .++.+.|.+.++|+++ |+.|+.++..|+.+||+.|-+
T Consensus 96 -----------~~--~~vi~~a~~~~i~~iP--G~~TptEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 96 -----------LT--PPLLKAAQEGPIPLIP--GVSTPSELMLGMELGLRTFKF 134 (212)
T ss_pred -----------CC--HHHHHHHHHcCCCEeC--CCCCHHHHHHHHHCCCCEEEE
Confidence 01 1445666678999999 999999999999999999987
No 150
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.88 E-value=2.2e-07 Score=98.40 Aligned_cols=195 Identities=19% Similarity=0.242 Sum_probs=123.1
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccC-CCCcceEEEe
Q 010640 164 VKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVG-PDGKWMVGAA 242 (505)
Q Consensus 164 ~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d-~~~~l~v~a~ 242 (505)
.++.++|.+ +++++.+++++.+++++|.+++...+||+|+++++|+||.+|+....... . ..+ ....+ +.+.
T Consensus 88 VKv~eim~~--~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~~~~~~-~---V~dIMt~~l-itv~ 160 (475)
T TIGR01303 88 VKSRDLVLD--TPITLAPHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLLGVDRFT-Q---VRDIMSTDL-VTAP 160 (475)
T ss_pred cchhhcccc--CCeEECCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhcCCCCC-C---HHHHccCCc-eEeC
Confidence 345677887 89999999999999999999999999999889999999999985432110 0 111 11111 1112
Q ss_pred ecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHh-CCCc-----eEEEccc-----CCHHHHHHHHHcCC
Q 010640 243 IGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKT-YPEL-----DVIGGNV-----VTMYQAQNLIEAGV 311 (505)
Q Consensus 243 i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~-~~~~-----~Vi~g~V-----~t~e~a~~l~~aGa 311 (505)
......+.++.+.+.+...+.+....+...+++..-.-++.. ++.. ...++.. ...+.++.|.++|+
T Consensus 161 --~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~~~~d~~grl~Vgaav~~~~~~~~ra~~Lv~aGV 238 (475)
T TIGR01303 161 --ADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYTPATDAAGRLRIGAAVGINGDVGGKAKALLDAGV 238 (475)
T ss_pred --CCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCCchhhhccCceehheeeeCccHHHHHHHHHHhCC
Confidence 233466777788888888765533333222222222222211 1111 1112211 24578899999999
Q ss_pred CEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 312 DGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 312 d~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
|.|.+... .++....+..+..+++.. .++|||+ |.+.|.+++..++.+|||+|-+|
T Consensus 239 d~i~~D~a----------~g~~~~~~~~i~~i~~~~--~~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 239 DVLVIDTA----------HGHQVKMISAIKAVRALD--LGVPIVA-GNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred CEEEEeCC----------CCCcHHHHHHHHHHHHHC--CCCeEEE-eccCCHHHHHHHHHhCCCEEEEC
Confidence 99987521 122233444454444322 2699999 66999999999999999999755
No 151
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=98.88 E-value=5.6e-09 Score=111.22 Aligned_cols=109 Identities=18% Similarity=0.272 Sum_probs=90.8
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc--c---ccccccccccccCC
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL--S---DNKVKIFDYMRDCS 174 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~--~---~~~~~v~~im~~~~ 174 (505)
+..++|..++ .++.+++++.++++.|.+ ++ +||+|+ +++++|+||.+|++.. . ..+.++.++|++
T Consensus 336 ~v~~im~~~~--~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~v~~im~~-- 408 (454)
T TIGR01137 336 TVKDLHLPAP--VTVHPTETVGDAIEILREYGFDQLPVVTE---AGKVLGSVTLRELLSALFAGKANPDDAVSKVMSK-- 408 (454)
T ss_pred CHHHhCcCCC--eEECCCCcHHHHHHHHHHcCCCEEEEEcC---CCeEEEEEEHHHHHHHHhccCCCcCCCHHHhcCC--
Confidence 3446777777 999999999999999987 65 899997 7999999999998631 1 224579999988
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
++.++++++++.+++++|.+++ .|||++ |+++|+||++|+++.+
T Consensus 409 ~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 409 KFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred CCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 8899999999999999998864 355655 9999999999999864
No 152
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=98.88 E-value=1.8e-07 Score=90.30 Aligned_cols=118 Identities=15% Similarity=0.131 Sum_probs=80.0
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCC---------------chhHHHHHHHHHHhCCCceEEEcc-----cCCHHHHHHH
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGN---------------SSFQIEMIKYAKKTYPELDVIGGN-----VVTMYQAQNL 306 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~---------------~~~~~~~i~~l~~~~~~~~Vi~g~-----V~t~e~a~~l 306 (505)
++..+.++.+.+ ..+.+.++..+.. +..+.+.++.+++. ++||.+|- ..+.+.++.+
T Consensus 85 ~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~--~~pVsvKir~g~~~~~~~la~~l 161 (233)
T cd02911 85 EPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKET--GVPVSVKIRAGVDVDDEELARLI 161 (233)
T ss_pred HHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhc--CCCEEEEEcCCcCcCHHHHHHHH
Confidence 334444554444 5688888765421 23456777777774 78888863 2456778899
Q ss_pred HHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccc
Q 010640 307 IEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSF 382 (505)
Q Consensus 307 ~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~ 382 (505)
.++|+|+|-+..+. .+ +......+.++ . .++|||+.|||.+.+|+.+++..|||+||+|+.
T Consensus 162 ~~aG~d~ihv~~~~---------~g-~~ad~~~I~~i---~--~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 162 EKAGADIIHVDAMD---------PG-NHADLKKIRDI---S--TELFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred HHhCCCEEEECcCC---------CC-CCCcHHHHHHh---c--CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 99999988653211 01 01122333333 2 469999999999999999999999999999997
No 153
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=98.86 E-value=3.3e-08 Score=99.25 Aligned_cols=135 Identities=23% Similarity=0.268 Sum_probs=82.5
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc----------hhHHHHHHHHHHhCCCceEEEc---ccCCHH---HHHHHHHcCC
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS----------SFQIEMIKYAKKTYPELDVIGG---NVVTMY---QAQNLIEAGV 311 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~----------~~~~~~i~~l~~~~~~~~Vi~g---~V~t~e---~a~~l~~aGa 311 (505)
++.+.++.+. .++|+++++.++.+. ....+.++.+++.. ++|+++| ++.... .+..+.+.|+
T Consensus 113 d~~~~a~~~~-~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~~-~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~ 190 (295)
T PF01180_consen 113 DWAELAKRLE-AGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREAV-DIPVFVKLSPNFTDIEPFAIAAELAADGA 190 (295)
T ss_dssp HHHHHHHHHH-HHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHHH-SSEEEEEE-STSSCHHHHHHHHHHHTHTE
T ss_pred HHHHHHHHhc-CcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhcc-CCCEEEEecCCCCchHHHHHHHHhhccce
Confidence 4445555444 889999999876432 12233444445443 7899986 334433 3455557899
Q ss_pred CEEEEccCCccee----------ecccccccCcCh--HHHHHHHHHHHhhcC--CcEEecCCCCCHHHHHHHHHhCCCEE
Q 010640 312 DGLRVGMGSGSIC----------TTQEVCAVGRGQ--ATAVYKVSSIAAQSG--VPVIADGGISNSGHIVKALVLGASTV 377 (505)
Q Consensus 312 d~I~v~~g~g~~~----------~~~~~~g~g~p~--~~~l~~v~~~~~~~~--ipvIa~GGI~~~~di~kal~lGA~~V 377 (505)
++|...+.-.... ......|...|. ..++..+++.++..+ +|||+.|||.+++|+.+.+.+||++|
T Consensus 191 ~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~V 270 (295)
T PF01180_consen 191 DGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAV 270 (295)
T ss_dssp CEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEE
T ss_pred eEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHh
Confidence 9998643211100 000112222232 235666666666666 99999999999999999999999999
Q ss_pred Eeccccc
Q 010640 378 MMGSFLA 384 (505)
Q Consensus 378 ~~G~~f~ 384 (505)
|++|.+.
T Consensus 271 qv~Sal~ 277 (295)
T PF01180_consen 271 QVCSALI 277 (295)
T ss_dssp EESHHHH
T ss_pred eechhhh
Confidence 9999873
No 154
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=98.84 E-value=7.8e-08 Score=87.89 Aligned_cols=127 Identities=22% Similarity=0.297 Sum_probs=94.6
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCC-ch-hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeec
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGN-SS-FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTT 326 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~-~~-~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~ 326 (505)
..+.++.|.++|++++.+|.+.-. +. ...+.++. ..+|++.+|+ .+.|.+++..+.++|+|+| |.+-..+|
T Consensus 87 tlkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~--~k~~~~l~MA-D~St~ee~l~a~~~G~D~I----GTTLsGYT 159 (229)
T COG3010 87 TLKEVDALAEAGADIIAFDATDRPRPDGDLEELIAR--IKYPGQLAMA-DCSTFEEGLNAHKLGFDII----GTTLSGYT 159 (229)
T ss_pred cHHHHHHHHHCCCcEEEeecccCCCCcchHHHHHHH--hhcCCcEEEe-ccCCHHHHHHHHHcCCcEE----eccccccc
Confidence 567889999999999999986532 22 34455554 3445777777 8999999999999999999 22222222
Q ss_pred ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
......-.|.+..+..+.+ .+.+||+.|.+.+|....+|+.+||++|.+|+++...
T Consensus 160 ~~~~~~~~pDf~lvk~l~~----~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITRp 215 (229)
T COG3010 160 GYTEKPTEPDFQLVKQLSD----AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITRP 215 (229)
T ss_pred CCCCCCCCCcHHHHHHHHh----CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCCH
Confidence 2111122467766655544 6799999999999999999999999999999998653
No 155
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=98.81 E-value=1.4e-07 Score=95.73 Aligned_cols=129 Identities=15% Similarity=0.195 Sum_probs=88.1
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCC---------------CchhHHHHHHHHHHhCCCceEEEcc---c-----CCHHH
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQG---------------NSSFQIEMIKYAKKTYPELDVIGGN---V-----VTMYQ 302 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g---------------~~~~~~~~i~~l~~~~~~~~Vi~g~---V-----~t~e~ 302 (505)
+++..+.++.+.++|+|.|.++..+. +...+.+.++.+++.. +.||.++- . ...+.
T Consensus 74 ~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~-~~pv~vKir~g~~~~~~~~~~~ 152 (319)
T TIGR00737 74 PDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAV-DIPVTVKIRIGWDDAHINAVEA 152 (319)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhc-CCCEEEEEEcccCCCcchHHHH
Confidence 44566677777778999999976432 1233456777777776 67887752 1 13466
Q ss_pred HHHHHHcCCCEEEEccCCcceeeccccccc-CcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHH-HhCCCEEEec
Q 010640 303 AQNLIEAGVDGLRVGMGSGSICTTQEVCAV-GRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKAL-VLGASTVMMG 380 (505)
Q Consensus 303 a~~l~~aGad~I~v~~g~g~~~~~~~~~g~-g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal-~lGA~~V~~G 380 (505)
++.+.++|+|+|.+... . . ..+. +.+....+ .+..+..++|||+.|||.++.|+.+++ ..|||+||+|
T Consensus 153 a~~l~~~G~d~i~vh~r--~----~-~~~~~~~~~~~~i---~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vmig 222 (319)
T TIGR00737 153 ARIAEDAGAQAVTLHGR--T----R-AQGYSGEANWDII---ARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIG 222 (319)
T ss_pred HHHHHHhCCCEEEEEcc--c----c-cccCCCchhHHHH---HHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEC
Confidence 78889999999987411 0 0 0111 11233333 333444679999999999999999999 6889999999
Q ss_pred ccccC
Q 010640 381 SFLAG 385 (505)
Q Consensus 381 ~~f~~ 385 (505)
+.++.
T Consensus 223 R~~l~ 227 (319)
T TIGR00737 223 RGALG 227 (319)
T ss_pred hhhhh
Confidence 99874
No 156
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.80 E-value=1.3e-07 Score=100.98 Aligned_cols=195 Identities=22% Similarity=0.219 Sum_probs=119.3
Q ss_pred cccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC----CeeeeEEeechhhhhhcCCCCCCCccC-CCC-cceE
Q 010640 166 IFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD----GERLDVVTREDVERLKGYPNLGKGTVG-PDG-KWMV 239 (505)
Q Consensus 166 v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~----g~l~GiIt~~dil~~~~~~~~~~~~~d-~~~-~l~v 239 (505)
..+.|.. +++++++++++.+++++|.++++..+||+|+ ++++|+||.+|+......... ..+ ... .-.+
T Consensus 98 ~e~g~i~--dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~~~~~---V~diMt~~~~lv 172 (495)
T PTZ00314 98 FENGFIM--DPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKDKSTP---VSEVMTPREKLV 172 (495)
T ss_pred ccccccc--CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcccCCCC---HHHhhCCcCCce
Confidence 4456766 8899999999999999999999999999986 689999999998743221100 001 000 0111
Q ss_pred EEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHH-hCC------CceEEEccc-----CCHHHHHHHH
Q 010640 240 GAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKK-TYP------ELDVIGGNV-----VTMYQAQNLI 307 (505)
Q Consensus 240 ~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~-~~~------~~~Vi~g~V-----~t~e~a~~l~ 307 (505)
.+. ......+..+.+.+.+...+.+....+...+++..-..++. .+| ...+.+|-. ...+.+..+.
T Consensus 173 tv~--~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p~a~~D~~GrL~Vgaavg~~~~~~~~~~~l~ 250 (495)
T PTZ00314 173 VGN--TPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRPEDIERAAALI 250 (495)
T ss_pred EeC--CCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCchhhhccCCCEEEEEEECCCHHHHHHHHHHH
Confidence 111 22335667777788888776553332221111111111111 111 123333211 2357889999
Q ss_pred HcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 308 EAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 308 ~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
++|+|.|.+... .|+..-.++.+.++++... ++||++ |.+.|..++..++.+|||++.+|
T Consensus 251 ~ag~d~i~id~a----------~G~s~~~~~~i~~ik~~~~--~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 251 EAGVDVLVVDSS----------QGNSIYQIDMIKKLKSNYP--HVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HCCCCEEEEecC----------CCCchHHHHHHHHHHhhCC--CceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 999999987531 1111112344544444321 578888 99999999999999999999764
No 157
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.79 E-value=1.4e-08 Score=89.60 Aligned_cols=86 Identities=15% Similarity=0.193 Sum_probs=70.7
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc--cc--c------------ccccccc-----
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS--DN--K------------VKIFDYM----- 170 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~--~~--~------------~~v~~im----- 170 (505)
+++++++++.+|++.|.+ ++ +||+|+ +++++|+||.+|+.... .. . ..+.++|
T Consensus 4 ~~v~~~~~l~ea~~~m~~~~~~~~~VvD~---~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 80 (133)
T cd04592 4 IKVSPTTTLKEALNLMLDEKQSCVLVVDS---DDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGIS 80 (133)
T ss_pred eEECCCCCHHHHHHHHHHcCCCEEEEECC---CCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhh
Confidence 789999999999999987 65 999997 89999999999986211 11 1 1133455
Q ss_pred ----ccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC
Q 010640 171 ----RDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD 205 (505)
Q Consensus 171 ----~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~ 205 (505)
++ +++++.+++++.+++++|.+++++.+||+|+
T Consensus 81 ~~~~~~--~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~ 117 (133)
T cd04592 81 YGGQEC--GLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR 117 (133)
T ss_pred hcccCC--CCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence 34 7899999999999999999999999999986
No 158
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.78 E-value=1.7e-07 Score=99.95 Aligned_cols=188 Identities=19% Similarity=0.181 Sum_probs=113.6
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC----CeeeeEEeechhhhhhcCCCCCCCccC-CC--CcceEEEeecCCc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD----GERLDVVTREDVERLKGYPNLGKGTVG-PD--GKWMVGAAIGTRE 247 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~----g~l~GiIt~~dil~~~~~~~~~~~~~d-~~--~~l~v~a~i~~~~ 247 (505)
+++++++++++.++++.|.+++...+||+|+ ++++|+||..|+......... +..+ .. ..+ +. +....
T Consensus 106 ~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~~~~--~V~dIMt~~~~~-it--v~~d~ 180 (502)
T PRK07107 106 SDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSLDT--KVKDFMTPFEKL-VT--ANEGT 180 (502)
T ss_pred CCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccCCCC--CHHHHhCCCCCe-EE--ECCCC
Confidence 4578999999999999999999999999985 799999999998643211100 0111 01 111 21 12233
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHH-hCC--------CceEEEcccC---CHHHHHHHHHcCCCEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKK-TYP--------ELDVIGGNVV---TMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~-~~~--------~~~Vi~g~V~---t~e~a~~l~~aGad~I~ 315 (505)
...+.++.+.+.++..+.+-...+...+++..-..++. .+| ...|.+ .+. ..+.++.|.++|+|+|.
T Consensus 181 ~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~~~P~a~~d~~grL~V~~-av~~~~~~~ra~~Lv~aGvd~i~ 259 (502)
T PRK07107 181 TLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKENPLELLDSSKRYVVGA-GINTRDYAERVPALVEAGADVLC 259 (502)
T ss_pred cHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcccChhhhhhhccCeeeee-ccChhhHHHHHHHHHHhCCCeEe
Confidence 46677777888888887654322221111111111111 111 222322 332 24678889999999998
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
+... .++..-.+..+..+++... .+++|++ |.|.+++++..++.+|||++.+|
T Consensus 260 vd~a----------~g~~~~~~~~i~~ir~~~~-~~~~V~a-GnV~t~e~a~~li~aGAd~I~vg 312 (502)
T PRK07107 260 IDSS----------EGYSEWQKRTLDWIREKYG-DSVKVGA-GNVVDREGFRYLAEAGADFVKVG 312 (502)
T ss_pred ecCc----------ccccHHHHHHHHHHHHhCC-CCceEEe-ccccCHHHHHHHHHcCCCEEEEC
Confidence 7521 1121223445554444322 1244544 99999999999999999999774
No 159
>PRK11573 hypothetical protein; Provisional
Probab=98.78 E-value=3.8e-08 Score=103.03 Aligned_cols=116 Identities=9% Similarity=-0.028 Sum_probs=96.3
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccc--cc---cccccccccCC
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSD--NK---VKIFDYMRDCS 174 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~--~~---~~v~~im~~~~ 174 (505)
...++|++..+.+.++.+.++.++++.+.+ +| +||++++ .+.++|+|..+|+..... .. ..+.++|+
T Consensus 188 ~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~--~D~IiGiv~~kDll~~~~~~~~~~~~~l~~~~r--- 262 (413)
T PRK11573 188 TVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDS--LDDAISMLRVREAYRLMTEKKEFTKENMLRAAD--- 262 (413)
T ss_pred ChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCC--CCceEEEEEHHHHHHHhhccCcCCHHHHHhhcc---
Confidence 344688887777899999999999999998 88 9999763 588999999999863211 11 22345554
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcC
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGY 223 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~ 223 (505)
++..++++.++.++++.|++++.+...|+|+ |...|+||.+||++.+-.
T Consensus 263 ~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivG 312 (413)
T PRK11573 263 EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVG 312 (413)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhC
Confidence 6889999999999999999999999999999 999999999999998753
No 160
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.78 E-value=8.9e-08 Score=95.89 Aligned_cols=138 Identities=16% Similarity=0.118 Sum_probs=89.8
Q ss_pred CccHHHHHHHHHHc---CccEEEEeCCCCC----------chhHHHHHHHHHHhCCCceEEEccc--CC----HHHHHHH
Q 010640 246 RESDKERLEHLVKA---GVNVVVLDSSQGN----------SSFQIEMIKYAKKTYPELDVIGGNV--VT----MYQAQNL 306 (505)
Q Consensus 246 ~~~~~e~~~~liea---Gad~I~i~~~~g~----------~~~~~~~i~~l~~~~~~~~Vi~g~V--~t----~e~a~~l 306 (505)
.+++.+.++.+.+. ++|+++++.++.+ ...+.+.++.+++.. ++||++|-- .+ .+.++.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~-~iPv~vKl~p~~~~~~~~~~a~~l 180 (294)
T cd04741 102 AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAY-SIPVGVKTPPYTDPAQFDTLAEAL 180 (294)
T ss_pred HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhc-CCCEEEEeCCCCCHHHHHHHHHHH
Confidence 44566666666664 6999999887533 245667777777775 789988722 12 2344555
Q ss_pred HHc--CCCEEEEccCCcc---ee--ecc-------cccccCcCh--HHHHHHHHHHHhhc--CCcEEecCCCCCHHHHHH
Q 010640 307 IEA--GVDGLRVGMGSGS---IC--TTQ-------EVCAVGRGQ--ATAVYKVSSIAAQS--GVPVIADGGISNSGHIVK 368 (505)
Q Consensus 307 ~~a--Gad~I~v~~g~g~---~~--~~~-------~~~g~g~p~--~~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~k 368 (505)
.++ |+|+|.+.+.-+. +. ..+ ...|...|. ..++..+++..+.. ++|||+.|||.+++|+.+
T Consensus 181 ~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e 260 (294)
T cd04741 181 NAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFR 260 (294)
T ss_pred hccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHH
Confidence 567 9999986432110 11 011 111221122 22455555555555 499999999999999999
Q ss_pred HHHhCCCEEEeccccc
Q 010640 369 ALVLGASTVMMGSFLA 384 (505)
Q Consensus 369 al~lGA~~V~~G~~f~ 384 (505)
.+.+|||+||+||.+.
T Consensus 261 ~l~aGA~~Vqv~ta~~ 276 (294)
T cd04741 261 MRLAGASAVQVGTALG 276 (294)
T ss_pred HHHcCCCceeEchhhh
Confidence 9999999999999874
No 161
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=98.78 E-value=6.7e-08 Score=98.32 Aligned_cols=135 Identities=20% Similarity=0.254 Sum_probs=86.0
Q ss_pred HHHHHHHHHcC--ccEEEEeCCCCCc---------hhHHHHHHHHHHhCC------CceEEEcc---cC---CHHHHHHH
Q 010640 250 KERLEHLVKAG--VNVVVLDSSQGNS---------SFQIEMIKYAKKTYP------ELDVIGGN---VV---TMYQAQNL 306 (505)
Q Consensus 250 ~e~~~~lieaG--ad~I~i~~~~g~~---------~~~~~~i~~l~~~~~------~~~Vi~g~---V~---t~e~a~~l 306 (505)
.+.++.+.+.+ +|+++++.++.+. ..+.+.++.+++... .+||++|- +. -.+.++.+
T Consensus 154 ~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~ 233 (335)
T TIGR01036 154 EDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSL 233 (335)
T ss_pred HHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHH
Confidence 34444443333 9999998765432 234556666665531 28999872 22 24466778
Q ss_pred HHcCCCEEEEccCCcc--eee----cccccccCcChHH--HHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCE
Q 010640 307 IEAGVDGLRVGMGSGS--ICT----TQEVCAVGRGQAT--AVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGAST 376 (505)
Q Consensus 307 ~~aGad~I~v~~g~g~--~~~----~~~~~g~g~p~~~--~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~ 376 (505)
.++|+|+|.+.+.--. ... .....|...|.+. ++..+.+..+.. ++|||+.|||.++.|+.+++.+||++
T Consensus 234 ~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~ 313 (335)
T TIGR01036 234 VELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASL 313 (335)
T ss_pred HHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcH
Confidence 8999999988642110 000 0012222223222 455555554444 59999999999999999999999999
Q ss_pred EEeccccc
Q 010640 377 VMMGSFLA 384 (505)
Q Consensus 377 V~~G~~f~ 384 (505)
||+||.+.
T Consensus 314 Vqv~ta~~ 321 (335)
T TIGR01036 314 LQIYSGFI 321 (335)
T ss_pred HHhhHHHH
Confidence 99999974
No 162
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=98.76 E-value=4.1e-07 Score=92.22 Aligned_cols=129 Identities=16% Similarity=0.204 Sum_probs=85.4
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCC---------------chhHHHHHHHHHHhCCCceEEEcc---c-----CCHHHH
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGN---------------SSFQIEMIKYAKKTYPELDVIGGN---V-----VTMYQA 303 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~---------------~~~~~~~i~~l~~~~~~~~Vi~g~---V-----~t~e~a 303 (505)
++..+.++.+.+.|+|.|.++.++.. +....+.++.+++.. ++||.++- . ...+.+
T Consensus 77 ~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~-d~pv~vKiR~G~~~~~~~~~~~a 155 (321)
T PRK10415 77 KEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV-DVPVTLKIRTGWAPEHRNCVEIA 155 (321)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc-CCceEEEEEccccCCcchHHHHH
Confidence 34445555566778999988775532 234566677777765 66776642 1 134566
Q ss_pred HHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHH-hCCCEEEeccc
Q 010640 304 QNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALV-LGASTVMMGSF 382 (505)
Q Consensus 304 ~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~-lGA~~V~~G~~ 382 (505)
+.+.++|+|+|.+.. .... .... |.+....+.++ .+..++|||+.|||.++.|+.+++. .|||+||+|+.
T Consensus 156 ~~le~~G~d~i~vh~--rt~~--~~~~--G~a~~~~i~~i---k~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~ 226 (321)
T PRK10415 156 QLAEDCGIQALTIHG--RTRA--CLFN--GEAEYDSIRAV---KQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRA 226 (321)
T ss_pred HHHHHhCCCEEEEec--Cccc--cccC--CCcChHHHHHH---HHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChH
Confidence 788899999997731 1100 0011 12223344443 3446799999999999999999997 69999999998
Q ss_pred ccC
Q 010640 383 LAG 385 (505)
Q Consensus 383 f~~ 385 (505)
++.
T Consensus 227 ~l~ 229 (321)
T PRK10415 227 AQG 229 (321)
T ss_pred hhc
Confidence 864
No 163
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=98.76 E-value=1.1e-07 Score=96.60 Aligned_cols=125 Identities=19% Similarity=0.195 Sum_probs=83.3
Q ss_pred CccEEEEeCCCCCc---------hhHHHHHHHHHHhCC----CceEEEccc--CC----HHHHHHHHHcCCCEEEEccCC
Q 010640 260 GVNVVVLDSSQGNS---------SFQIEMIKYAKKTYP----ELDVIGGNV--VT----MYQAQNLIEAGVDGLRVGMGS 320 (505)
Q Consensus 260 Gad~I~i~~~~g~~---------~~~~~~i~~l~~~~~----~~~Vi~g~V--~t----~e~a~~l~~aGad~I~v~~g~ 320 (505)
.+|++.++.++.+. ....+.++.+++... ++||++|-- .+ .+.++.+.++|+|+|.+.+.-
T Consensus 160 ~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~ 239 (327)
T cd04738 160 YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTT 239 (327)
T ss_pred hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 49999998866543 345677778877652 378888632 22 456677889999999875421
Q ss_pred ccee------ecccccccCcChH--HHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 321 GSIC------TTQEVCAVGRGQA--TAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 321 g~~~------~~~~~~g~g~p~~--~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
.... ......|+..|.. .++..+.+..+.. ++|||+.|||.++.|+.+.+.+|||+||+||.|+
T Consensus 240 ~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~ 313 (327)
T cd04738 240 ISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLV 313 (327)
T ss_pred ccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHH
Confidence 1000 0001112222221 2344455554444 6999999999999999999999999999999985
No 164
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.75 E-value=4.1e-07 Score=88.06 Aligned_cols=176 Identities=21% Similarity=0.253 Sum_probs=109.7
Q ss_pred CHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCcc
Q 010640 184 DLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVN 262 (505)
Q Consensus 184 ~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad 262 (505)
...+.++.+.+.+.+.+.|+|- +...|--...++++.... .....+.++..+. ..+.++.+++.|+|
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~--------~~~~pv~~~GgI~----~~e~~~~~~~~Gad 97 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVK--------AVGIPVQVGGGIR----SLEDIERLLDLGVS 97 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHH--------hcCCCEEEeCCcC----CHHHHHHHHHcCCC
Confidence 5567777888899999999986 432222222333333211 1122345555554 45778888899999
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhCCCceEEEc-----------------ccCCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 263 VVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG-----------------NVVTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 263 ~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g-----------------~V~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
.+.+....-. ..++++++.+.+..-.+++. .....+.++.+.+.|++.+.+.. .
T Consensus 98 ~vvigs~~l~---dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~------~ 168 (234)
T cd04732 98 RVIIGTAAVK---NPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTD------I 168 (234)
T ss_pred EEEECchHHh---ChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEe------e
Confidence 9988553321 13445556666533122221 11234567788899999986631 1
Q ss_pred cccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
++.-...| +..+.+..+.+ ..++|+++.|||.+..|+.+++..||++|++|+.|.
T Consensus 169 ~~~g~~~g-~~~~~i~~i~~---~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~ 223 (234)
T cd04732 169 SRDGTLSG-PNFELYKELAA---ATGIPVIASGGVSSLDDIKALKELGVAGVIVGKALY 223 (234)
T ss_pred cCCCccCC-CCHHHHHHHHH---hcCCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHH
Confidence 11111122 44555555443 457999999999999999999999999999999985
No 165
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.74 E-value=2.3e-07 Score=88.13 Aligned_cols=110 Identities=22% Similarity=0.268 Sum_probs=92.0
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCC---CceEEEcccCCHHHHHHHHHcCCCEEEEccCCc
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYP---ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSG 321 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~---~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g 321 (505)
+.++....++.+.+.|+.++++..... ...+.++.+++.++ ++.|.+|+|.|.++++.+.++|+++++-.
T Consensus 23 ~~~~a~~~~~al~~~Gi~~iEit~~~~---~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP---- 95 (213)
T PRK06552 23 SKEEALKISLAVIKGGIKAIEVTYTNP---FASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSP---- 95 (213)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCc---cHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECC----
Confidence 345577889999999999999977643 46788899988883 57889999999999999999999999421
Q ss_pred ceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 322 SICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 322 ~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
++ -.++.++|++.++|++. |+.|+.++..|+.+|||.|.+
T Consensus 96 --~~--------------~~~v~~~~~~~~i~~iP--G~~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 96 --SF--------------NRETAKICNLYQIPYLP--GCMTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred --CC--------------CHHHHHHHHHcCCCEEC--CcCCHHHHHHHHHcCCCEEEE
Confidence 11 12556778888999999 999999999999999999997
No 166
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=98.70 E-value=2.8e-07 Score=88.31 Aligned_cols=125 Identities=14% Similarity=0.161 Sum_probs=85.5
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCC---------------chhHHHHHHHHHHhCCCceEEEcc---c---CCHHHH
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGN---------------SSFQIEMIKYAKKTYPELDVIGGN---V---VTMYQA 303 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~---------------~~~~~~~i~~l~~~~~~~~Vi~g~---V---~t~e~a 303 (505)
++++..+.++.+ +.+++.+.++..+.. +..+.+.++.+++. ++||.+|- . .+.+.+
T Consensus 78 ~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~--~~PVsvKiR~~~~~~~~~~~a 154 (231)
T TIGR00736 78 DLEEAYDVLLTI-AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKEL--NKPIFVKIRGNCIPLDELIDA 154 (231)
T ss_pred CHHHHHHHHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcC--CCcEEEEeCCCCCcchHHHHH
Confidence 344455555544 558999999875522 23456666666643 68888862 2 345788
Q ss_pred HHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHHHhCCCEEEeccc
Q 010640 304 QNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQS-GVPVIADGGISNSGHIVKALVLGASTVMMGSF 382 (505)
Q Consensus 304 ~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~ 382 (505)
+.+.++|+|+|.|... ..|.+......+.++++ .. ++|||+.|||.+.+|+.+.+..|||+||+|+.
T Consensus 155 ~~l~~aGad~i~Vd~~---------~~g~~~a~~~~I~~i~~---~~~~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~ 222 (231)
T TIGR00736 155 LNLVDDGFDGIHVDAM---------YPGKPYADMDLLKILSE---EFNDKIIIGNNSIDDIESAKEMLKAGADFVSVARA 222 (231)
T ss_pred HHHHHcCCCEEEEeeC---------CCCCchhhHHHHHHHHH---hcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEcHh
Confidence 9999999999977310 11111123444544444 44 49999999999999999999999999999997
Q ss_pred cc
Q 010640 383 LA 384 (505)
Q Consensus 383 f~ 384 (505)
.+
T Consensus 223 ~l 224 (231)
T TIGR00736 223 IL 224 (231)
T ss_pred hc
Confidence 64
No 167
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=98.70 E-value=3.6e-07 Score=88.43 Aligned_cols=129 Identities=19% Similarity=0.218 Sum_probs=93.3
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCccee----
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSIC---- 324 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~---- 324 (505)
....++.|.++|+|+| +.+ .......+.++.+|..| ++++++ .+.|.+++..+.+.|+|+|---..+++..
T Consensus 76 ~~~Ea~~L~eaGvDiI--DaT-~r~rP~~~~~~~iK~~~-~~l~MA-D~stleEal~a~~~Gad~I~TTl~gyT~~~~~~ 150 (283)
T cd04727 76 HFVEAQILEALGVDMI--DES-EVLTPADEEHHIDKHKF-KVPFVC-GARNLGEALRRISEGAAMIRTKGEAGTGNVVEA 150 (283)
T ss_pred HHHHHHHHHHcCCCEE--ecc-CCCCcHHHHHHHHHHHc-CCcEEc-cCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHH
Confidence 3677888999999999 432 22333567888888988 899888 79999999999999999995532222111
Q ss_pred ----------------ecccc----cccCcChHHHHHHHHHHHhhcCCcEE--ecCCCCCHHHHHHHHHhCCCEEEeccc
Q 010640 325 ----------------TTQEV----CAVGRGQATAVYKVSSIAAQSGVPVI--ADGGISNSGHIVKALVLGASTVMMGSF 382 (505)
Q Consensus 325 ----------------~~~~~----~g~g~p~~~~l~~v~~~~~~~~ipvI--a~GGI~~~~di~kal~lGA~~V~~G~~ 382 (505)
++... .....+.+..|..+.+ ..++||| +.|||.++.++.+++.+||++|.+|+.
T Consensus 151 ~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~---~~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSA 227 (283)
T cd04727 151 VRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAK---LGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSG 227 (283)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHH---hcCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHH
Confidence 11000 0001244455554443 4569997 999999999999999999999999999
Q ss_pred ccC
Q 010640 383 LAG 385 (505)
Q Consensus 383 f~~ 385 (505)
+..
T Consensus 228 I~~ 230 (283)
T cd04727 228 IFK 230 (283)
T ss_pred hhc
Confidence 864
No 168
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.69 E-value=1e-06 Score=84.30 Aligned_cols=178 Identities=14% Similarity=0.171 Sum_probs=113.8
Q ss_pred cCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHH
Q 010640 180 PANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVK 258 (505)
Q Consensus 180 ~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lie 258 (505)
....+..+..+.+.+.+...|-|+|+ +..-|-+. ++-...... .+++....... ..+.++.+.+
T Consensus 28 ~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~--~~~~i~~~v-----------~iPi~~~~~i~--~~~~v~~~~~ 92 (217)
T cd00331 28 REDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLE--DLRAVREAV-----------SLPVLRKDFII--DPYQIYEARA 92 (217)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHH--HHHHHHHhc-----------CCCEEECCeec--CHHHHHHHHH
Confidence 34556788899999999999999987 66655542 222211110 12222211111 2257888999
Q ss_pred cCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHH
Q 010640 259 AGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQAT 338 (505)
Q Consensus 259 aGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~ 338 (505)
+|+|.+.+....-......++++..+.. ++.+++ .+.+.++++.+.+.|++.+.+.. +..... .+.+.
T Consensus 93 ~Gad~v~l~~~~~~~~~~~~~~~~~~~~--g~~~~v-~v~~~~e~~~~~~~g~~~i~~t~--------~~~~~~-~~~~~ 160 (217)
T cd00331 93 AGADAVLLIVAALDDEQLKELYELAREL--GMEVLV-EVHDEEELERALALGAKIIGINN--------RDLKTF-EVDLN 160 (217)
T ss_pred cCCCEEEEeeccCCHHHHHHHHHHHHHc--CCeEEE-EECCHHHHHHHHHcCCCEEEEeC--------CCcccc-CcCHH
Confidence 9999998855432212333444433332 555544 56799999999999999995531 111111 13344
Q ss_pred HHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 339 AVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 339 ~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.+.++++... .++|+++.|||.++.|+.+++.+||++|.+|+.+..
T Consensus 161 ~~~~l~~~~~-~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~ 206 (217)
T cd00331 161 TTERLAPLIP-KDVILVSESGISTPEDVKRLAEAGADAVLIGESLMR 206 (217)
T ss_pred HHHHHHHhCC-CCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence 4544443321 368999999999999999999999999999999864
No 169
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.69 E-value=1.1e-07 Score=100.45 Aligned_cols=124 Identities=14% Similarity=0.106 Sum_probs=99.4
Q ss_pred HHHHHhhhc-----cCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccc---
Q 010640 95 ARLVVSAKS-----RRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNK--- 163 (505)
Q Consensus 95 ~~~v~~v~~-----~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~--- 163 (505)
.+++..+.+ .+++|++..+.+.++.+.++.++.+.+.+ +| +||++++ .+.++|+++.+|+.......
T Consensus 194 ~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~--~D~iiGiv~~Kdll~~~~~~~~~ 271 (429)
T COG1253 194 REMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGD--LDNIIGIVHVKDLLRALLDGQSD 271 (429)
T ss_pred HHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCC--CCcEEEEEEHHHHHHHHhcCccc
Confidence 345555543 44588887777889999999999999988 88 9999943 78899999999996332111
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcC
Q 010640 164 VKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGY 223 (505)
Q Consensus 164 ~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~ 223 (505)
......+. +++.+++.+++.++++.|++.+.+...|+|+ |.+.|+||.+||++..-.
T Consensus 272 ~~~~~~~~---~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvG 329 (429)
T COG1253 272 LDLRVLVR---PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVG 329 (429)
T ss_pred cchhhccc---CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhC
Confidence 12222222 7899999999999999999999999999999 999999999999998764
No 170
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.68 E-value=3.1e-08 Score=73.45 Aligned_cols=54 Identities=19% Similarity=0.354 Sum_probs=51.0
Q ss_pred cccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 166 IFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 166 v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
++++|++ +++++++++++.++++.|.+++.+.+||+|+ |+++|+||++||++..
T Consensus 1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence 4678998 9999999999999999999999999999998 9999999999999875
No 171
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=98.68 E-value=2.1e-07 Score=90.06 Aligned_cols=128 Identities=19% Similarity=0.220 Sum_probs=93.6
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCccee----
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSIC---- 324 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~---- 324 (505)
....++.|.+.|+|+| |.+. ......+.+..+|..| ++|+++ .+.+.++|...++.|+|+|.--..+|+..
T Consensus 78 h~~Ea~~L~~~GvDiI--DeTe-~lrPade~~~~~K~~f-~vpfma-d~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~a 152 (287)
T TIGR00343 78 HFVEAQILEALGVDYI--DESE-VLTPADWTFHIDKKKF-KVPFVC-GARDLGEALRRINEGAAMIRTKGEAGTGNIVEA 152 (287)
T ss_pred HHHHHHHHHHcCCCEE--EccC-CCCcHHHHHHHHHHHc-CCCEEc-cCCCHHHHHHHHHCCCCEEeccccCCCccHHHH
Confidence 4677888999999999 4332 2233567788888888 899887 79999999999999999996532222211
Q ss_pred ------ec---cc-------------ccccCcChHHHHHHHHHHHhhcCCcEE--ecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 325 ------TT---QE-------------VCAVGRGQATAVYKVSSIAAQSGVPVI--ADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 325 ------~~---~~-------------~~g~g~p~~~~l~~v~~~~~~~~ipvI--a~GGI~~~~di~kal~lGA~~V~~G 380 (505)
++ +. ....+ +.+..+.++.+ ..++||+ +.|||.|+.|+..++.+||++|.+|
T Consensus 153 v~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~elLkei~~---~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVG 228 (287)
T TIGR00343 153 VRHMRKINEEIRQIQNMLEEEDLAAVAKELR-VPVELLLEVLK---LGKLPVVNFAAGGVATPADAALMMQLGADGVFVG 228 (287)
T ss_pred HHHHHHHHHHHHHHhcccchhHHhhhhcccC-CCHHHHHHHHH---hCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEh
Confidence 00 00 11122 44555555544 3569998 9999999999999999999999999
Q ss_pred ccccC
Q 010640 381 SFLAG 385 (505)
Q Consensus 381 ~~f~~ 385 (505)
+.+..
T Consensus 229 SaI~k 233 (287)
T TIGR00343 229 SGIFK 233 (287)
T ss_pred HHhhc
Confidence 99864
No 172
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.68 E-value=3.5e-08 Score=107.54 Aligned_cols=113 Identities=19% Similarity=0.257 Sum_probs=95.7
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccc--cc-----------------
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWEN--LS----------------- 160 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~--~~----------------- 160 (505)
+..++|..++ +++++++++.+|+++|.+ ++ +||+|+ +|+++|+||.+|+.. ..
T Consensus 69 ~V~dim~~~~--~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i 143 (546)
T PRK14869 69 QVRDLEIDKP--VTVSPDTSLKEAWNLMDENNVKTLPVVDE---EGKLLGLVSLSDLARAYMDILDPEILSKSPTSLENI 143 (546)
T ss_pred cHHHhcCCCC--cEECCCCcHHHHHHHHHHcCCCEEEEEcC---CCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHH
Confidence 3446777788 999999999999999988 76 999997 899999999887631 00
Q ss_pred --------------------------------------------------------------------------------
Q 010640 161 -------------------------------------------------------------------------------- 160 (505)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (505)
T Consensus 144 ~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~~ 223 (546)
T PRK14869 144 IRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAKE 223 (546)
T ss_pred HHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHh
Confidence
Q ss_pred -------------------ccccccccccc-cCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 161 -------------------DNKVKIFDYMR-DCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 161 -------------------~~~~~v~~im~-~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
....++.++|+ + +++++++++++.++.+.|.+++.+.+||+|+ |+++|+||++|+++
T Consensus 224 ~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~ 301 (546)
T PRK14869 224 NGVTVISTPYDTFTTARLINQSIPVSYIMTTE--DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLS 301 (546)
T ss_pred CCCeEEEecccHHHHHHHhhcCCCHHHhccCC--CcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhc
Confidence 01235677898 6 8999999999999999999999999999998 99999999999998
Q ss_pred hhc
Q 010640 220 LKG 222 (505)
Q Consensus 220 ~~~ 222 (505)
...
T Consensus 302 ~~~ 304 (546)
T PRK14869 302 PVR 304 (546)
T ss_pred ccc
Confidence 654
No 173
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.65 E-value=1.4e-06 Score=84.15 Aligned_cols=176 Identities=21% Similarity=0.247 Sum_probs=108.9
Q ss_pred CCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCc
Q 010640 183 YDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGV 261 (505)
Q Consensus 183 ~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGa 261 (505)
.+..++++.+.+.+.+.+-|+|. +..-|--...++++.... .....+.++..+. ..+.++.+.+.|+
T Consensus 28 ~dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~--------~~~~pi~~ggGI~----~~ed~~~~~~~Ga 95 (230)
T TIGR00007 28 DDPVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVR--------ETGVPVQVGGGIR----SLEDVEKLLDLGV 95 (230)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHH--------hcCCCEEEeCCcC----CHHHHHHHHHcCC
Confidence 45677788889999999999987 554453222334443321 1112344544443 5577888899999
Q ss_pred cEEEEeCC-CCCchhHHHHHHHHHHhCCCceEEE-----------c------ccCCHHHHHHHHHcCCCEEEEc-cCCcc
Q 010640 262 NVVVLDSS-QGNSSFQIEMIKYAKKTYPELDVIG-----------G------NVVTMYQAQNLIEAGVDGLRVG-MGSGS 322 (505)
Q Consensus 262 d~I~i~~~-~g~~~~~~~~i~~l~~~~~~~~Vi~-----------g------~V~t~e~a~~l~~aGad~I~v~-~g~g~ 322 (505)
+.+.+.+. ..+. +.+..+.+.+..-.+++ . .....+.++.+.+.|++.+.+- ..
T Consensus 96 ~~vvlgs~~l~d~----~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~--- 168 (230)
T TIGR00007 96 DRVIIGTAAVENP----DLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTDIS--- 168 (230)
T ss_pred CEEEEChHHhhCH----HHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEeec---
Confidence 99877432 1222 33344444441111211 1 1122567788999999977652 21
Q ss_pred eeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 323 ICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 323 ~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
+.....| +....+..+.+ ..++|++++|||++..|+.+++..||++|++|+.|..
T Consensus 169 ----~~g~~~g-~~~~~i~~i~~---~~~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~ 223 (230)
T TIGR00007 169 ----RDGTLSG-PNFELTKELVK---AVNVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYE 223 (230)
T ss_pred ----CCCCcCC-CCHHHHHHHHH---hCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHc
Confidence 1111122 34555544443 3579999999999999999999999999999999853
No 174
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=98.63 E-value=6.9e-07 Score=86.26 Aligned_cols=131 Identities=21% Similarity=0.243 Sum_probs=90.0
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCC---------------CchhHHHHHHHHHHhCCCceEEEcc---c----CCHHH
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQG---------------NSSFQIEMIKYAKKTYPELDVIGGN---V----VTMYQ 302 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g---------------~~~~~~~~i~~l~~~~~~~~Vi~g~---V----~t~e~ 302 (505)
.++++.+.++.+.++|+|.+.++..+. ......+.++.+++.. ..|+.++- . ...+.
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~-~~~v~vk~r~~~~~~~~~~~~ 143 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAV-PIPVTVKIRLGWDDEEETLEL 143 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhc-CCCEEEEEeeccCCchHHHHH
Confidence 345677777888888999999987552 3345678888888876 35666641 1 12344
Q ss_pred HHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHh-CCCEEEecc
Q 010640 303 AQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVL-GASTVMMGS 381 (505)
Q Consensus 303 a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~l-GA~~V~~G~ 381 (505)
++.+.++|+|+|.+..... .....+.+.+..+.. ..+..++||+++|||.+..|+.+++.. |||+|++|+
T Consensus 144 ~~~l~~~Gvd~i~v~~~~~------~~~~~~~~~~~~~~~---i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr 214 (231)
T cd02801 144 AKALEDAGASALTVHGRTR------EQRYSGPADWDYIAE---IKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGR 214 (231)
T ss_pred HHHHHHhCCCEEEECCCCH------HHcCCCCCCHHHHHH---HHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcH
Confidence 6778889999998752210 000011223444433 334567999999999999999999998 899999999
Q ss_pred cccC
Q 010640 382 FLAG 385 (505)
Q Consensus 382 ~f~~ 385 (505)
.++.
T Consensus 215 ~~l~ 218 (231)
T cd02801 215 GALG 218 (231)
T ss_pred HhHh
Confidence 8864
No 175
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=98.60 E-value=6.5e-07 Score=86.96 Aligned_cols=129 Identities=20% Similarity=0.227 Sum_probs=92.4
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeec--
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTT-- 326 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~-- 326 (505)
....++.|.+.|+|+| |.+. .....-+.+..+|..| ++|+++ .+.+.++|...++.|+|+|.--..+|+....
T Consensus 85 h~~Ea~~L~~~GvDiI--D~Te-~lrpad~~~~~~K~~f-~~~fma-d~~~l~EAlrai~~GadmI~Ttge~gtg~v~~a 159 (293)
T PRK04180 85 HFVEAQILEALGVDYI--DESE-VLTPADEEYHIDKWDF-TVPFVC-GARNLGEALRRIAEGAAMIRTKGEAGTGNVVEA 159 (293)
T ss_pred HHHHHHHHHHcCCCEE--eccC-CCCchHHHHHHHHHHc-CCCEEc-cCCCHHHHHHHHHCCCCeeeccCCCCCccHHHH
Confidence 4677888999999999 3332 2233557788888888 889887 7999999999999999999653222221000
Q ss_pred -----------cccccc-----------CcChHHHHHHHHHHHhhcCCcEE--ecCCCCCHHHHHHHHHhCCCEEEeccc
Q 010640 327 -----------QEVCAV-----------GRGQATAVYKVSSIAAQSGVPVI--ADGGISNSGHIVKALVLGASTVMMGSF 382 (505)
Q Consensus 327 -----------~~~~g~-----------g~p~~~~l~~v~~~~~~~~ipvI--a~GGI~~~~di~kal~lGA~~V~~G~~ 382 (505)
+.+.|. -.+.+..+.++.+ ..++||+ +.|||.|+.|+..++.+||++|.+|+.
T Consensus 160 v~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~---~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSa 236 (293)
T PRK04180 160 VRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAE---LGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSG 236 (293)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHH---hCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHH
Confidence 001111 1234455554444 3569998 999999999999999999999999999
Q ss_pred ccC
Q 010640 383 LAG 385 (505)
Q Consensus 383 f~~ 385 (505)
+..
T Consensus 237 I~k 239 (293)
T PRK04180 237 IFK 239 (293)
T ss_pred hhc
Confidence 864
No 176
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.59 E-value=1.4e-06 Score=84.28 Aligned_cols=133 Identities=21% Similarity=0.268 Sum_probs=92.1
Q ss_pred cHHHHHHHHHH-cCccEEEE-eC--CCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEccCC--
Q 010640 248 SDKERLEHLVK-AGVNVVVL-DS--SQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVGMGS-- 320 (505)
Q Consensus 248 ~~~e~~~~lie-aGad~I~i-~~--~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~~g~-- 320 (505)
+..+.++.+.+ .|++.+++ |. +........+.++.+.+.. ++|+.+ |++.+.++++.+..+|++.++++...
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~-~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~ 110 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLT-TKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQ 110 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhc-CCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhc
Confidence 35678888888 68998866 43 3222234577888888765 789877 68899999999999999999886410
Q ss_pred -------------ccee---------------------------------------eccc-cccc-CcChHHHHHHHHHH
Q 010640 321 -------------GSIC---------------------------------------TTQE-VCAV-GRGQATAVYKVSSI 346 (505)
Q Consensus 321 -------------g~~~---------------------------------------~~~~-~~g~-g~p~~~~l~~v~~~ 346 (505)
..+. .+.. ..|. ..|.+..+..+
T Consensus 111 ~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l--- 187 (234)
T PRK13587 111 DTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQL--- 187 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHH---
Confidence 0000 0000 0000 01334444333
Q ss_pred HhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 347 AAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 347 ~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
++..++|||++|||++..|+.+++.+|+++|.+|++|.
T Consensus 188 ~~~~~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~ 225 (234)
T PRK13587 188 VKATTIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAH 225 (234)
T ss_pred HHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHH
Confidence 33457999999999999999999999999999999884
No 177
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.58 E-value=8e-07 Score=82.86 Aligned_cols=131 Identities=19% Similarity=0.311 Sum_probs=93.2
Q ss_pred ccHHHHHHHHHHcCccEEEE-eC--CCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEcc----
Q 010640 247 ESDKERLEHLVKAGVNVVVL-DS--SQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVGM---- 318 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i-~~--~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~~---- 318 (505)
.+..+.++..-+.|+|-+++ |. +......+++++++..+.. .+|+-+ |++.+.++++++..+|||=|.+..
T Consensus 30 GDpVelA~~Y~e~GADElvFlDItAs~~gr~~~~~vv~r~A~~v-fiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~ 108 (256)
T COG0107 30 GDPVELAKRYNEEGADELVFLDITASSEGRETMLDVVERVAEQV-FIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVK 108 (256)
T ss_pred CChHHHHHHHHHcCCCeEEEEecccccccchhHHHHHHHHHhhc-eeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhc
Confidence 45778899999999998765 43 3333457888888888876 788855 688999999999999999775532
Q ss_pred -------------------------C-Cc---ce-ee---ccc-------------------------------ccccCc
Q 010640 319 -------------------------G-SG---SI-CT---TQE-------------------------------VCAVGR 334 (505)
Q Consensus 319 -------------------------g-~g---~~-~~---~~~-------------------------------~~g~g~ 334 (505)
. .| .. ++ ++. ..|+.
T Consensus 109 ~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~GyD- 187 (256)
T COG0107 109 DPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAGYD- 187 (256)
T ss_pred ChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccccccCcC-
Confidence 0 01 00 00 011 11121
Q ss_pred ChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEeccccc
Q 010640 335 GQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMGSFLA 384 (505)
Q Consensus 335 p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G~~f~ 384 (505)
+...+..+...++||||+||..+++++..++..| ||++..++.|.
T Consensus 188 -----l~l~~~v~~~v~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiFH 233 (256)
T COG0107 188 -----LELTRAVREAVNIPVIASGGAGKPEHFVEAFTEGKADAALAASIFH 233 (256)
T ss_pred -----HHHHHHHHHhCCCCEEecCCCCcHHHHHHHHHhcCccHHHhhhhhh
Confidence 1222333445679999999999999999999988 99999999984
No 178
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.56 E-value=1.6e-06 Score=84.35 Aligned_cols=132 Identities=17% Similarity=0.233 Sum_probs=91.8
Q ss_pred cHHHHHHHHHHcCccEEEE-eC--CCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEccCC---
Q 010640 248 SDKERLEHLVKAGVNVVVL-DS--SQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVGMGS--- 320 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i-~~--~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~~g~--- 320 (505)
+..+.++.+.+.|++.+++ |. ..|.. ...+.++.+.+.+ .+|+.+ |++.+.++++.+..+|++.+.++...
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~g~~-~n~~~i~~i~~~~-~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~ 110 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAFGRG-SNRELLAEVVGKL-DVKVELSGGIRDDESLEAALATGCARVNIGTAALEN 110 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccCCCC-ccHHHHHHHHHHc-CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCC
Confidence 4678888898999998766 33 33433 3458888888876 788877 68899999999999999998776410
Q ss_pred ------------cceee---c---cc-ccccC---------------------------------cChHHHHHHHHHHHh
Q 010640 321 ------------GSICT---T---QE-VCAVG---------------------------------RGQATAVYKVSSIAA 348 (505)
Q Consensus 321 ------------g~~~~---~---~~-~~g~g---------------------------------~p~~~~l~~v~~~~~ 348 (505)
..+.. . .. ..||. .|....+.++ ++
T Consensus 111 p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i---~~ 187 (241)
T PRK14024 111 PEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTGPNLELLREV---CA 187 (241)
T ss_pred HHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHH---Hh
Confidence 00000 0 00 00111 1223333333 33
Q ss_pred hcCCcEEecCCCCCHHHHHHHHHh---CCCEEEeccccc
Q 010640 349 QSGVPVIADGGISNSGHIVKALVL---GASTVMMGSFLA 384 (505)
Q Consensus 349 ~~~ipvIa~GGI~~~~di~kal~l---GA~~V~~G~~f~ 384 (505)
..++|||++|||.+..|+.+++.+ ||++|++|+.|.
T Consensus 188 ~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~ 226 (241)
T PRK14024 188 RTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALY 226 (241)
T ss_pred hCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHH
Confidence 457999999999999999999764 999999999985
No 179
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.56 E-value=2.8e-06 Score=82.73 Aligned_cols=177 Identities=17% Similarity=0.162 Sum_probs=109.1
Q ss_pred CHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCcc
Q 010640 184 DLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVN 262 (505)
Q Consensus 184 ~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad 262 (505)
+..+.++.+.+.+++.+-++|- ...-+.-...+.++.... ...-.+.++..+. ..+.++.+++.|++
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~--------~~~~~l~v~GGi~----~~~~~~~~~~~Ga~ 100 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIE--------AVGVPVQLGGGIR----SAEDAASLLDLGVD 100 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHH--------HcCCcEEEcCCcC----CHHHHHHHHHcCCC
Confidence 5667778888899999988875 333343333333333211 1222345555553 44777888899999
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhCCCceEEE-----------cc------cCCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 263 VVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG-----------GN------VVTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 263 ~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~-----------g~------V~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
.+++....-. ..+.+..+.+.++.-.+++ ++ ....+.++.+.+.|++.+.+-. .
T Consensus 101 ~v~iGs~~~~---~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~------~ 171 (241)
T PRK13585 101 RVILGTAAVE---NPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTN------V 171 (241)
T ss_pred EEEEChHHhh---ChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEe------e
Confidence 9988543221 1234555556653211211 11 1235678888999999986521 0
Q ss_pred cccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.+.-.. ..+....+.+++ +..++||++.|||++..|+.+++.+||++|++|+.|..
T Consensus 172 ~~~g~~-~g~~~~~i~~i~---~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~ 227 (241)
T PRK13585 172 DVEGLL-EGVNTEPVKELV---DSVDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYK 227 (241)
T ss_pred cCCCCc-CCCCHHHHHHHH---HhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhc
Confidence 111000 113444454444 34579999999999999999999999999999999854
No 180
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.54 E-value=6.3e-06 Score=81.02 Aligned_cols=180 Identities=14% Similarity=0.154 Sum_probs=119.6
Q ss_pred ecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHH
Q 010640 179 VPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLV 257 (505)
Q Consensus 179 v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li 257 (505)
+.....+.+..+.+.+.|...+-|..+ ..+-|= .+||....... .+++....-.. +. ..+..+.
T Consensus 66 i~~~~~~~~~A~~~~~~GA~aisvlte~~~f~g~--~~~l~~v~~~v-----------~iPvl~kdfi~-~~-~qi~~a~ 130 (260)
T PRK00278 66 IREDFDPVEIAKAYEAGGAACLSVLTDERFFQGS--LEYLRAARAAV-----------SLPVLRKDFII-DP-YQIYEAR 130 (260)
T ss_pred cCCCCCHHHHHHHHHhCCCeEEEEecccccCCCC--HHHHHHHHHhc-----------CCCEEeeeecC-CH-HHHHHHH
Confidence 344567788888899999988888766 555554 34444433211 12222221111 12 3678888
Q ss_pred HcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChH
Q 010640 258 KAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQA 337 (505)
Q Consensus 258 eaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~ 337 (505)
++|+|++.+..+.-......+.++..++. +..+++ ++.+.++++.+.++|+|.|-+. .+....+ .+.+
T Consensus 131 ~~GAD~VlLi~~~l~~~~l~~li~~a~~l--Gl~~lv-evh~~~E~~~A~~~gadiIgin--------~rdl~~~-~~d~ 198 (260)
T PRK00278 131 AAGADAILLIVAALDDEQLKELLDYAHSL--GLDVLV-EVHDEEELERALKLGAPLIGIN--------NRNLKTF-EVDL 198 (260)
T ss_pred HcCCCEEEEEeccCCHHHHHHHHHHHHHc--CCeEEE-EeCCHHHHHHHHHcCCCEEEEC--------CCCcccc-cCCH
Confidence 99999998876552223455666666554 677777 8899999999999999988543 1222212 2334
Q ss_pred HHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 338 TAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 338 ~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
..+.++....+ ..+|+|+-|||.++.|+.+++.+||++|.+|+.+..+
T Consensus 199 ~~~~~l~~~~p-~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~ 246 (260)
T PRK00278 199 ETTERLAPLIP-SDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRA 246 (260)
T ss_pred HHHHHHHHhCC-CCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCC
Confidence 44444444332 1469999999999999999999999999999998754
No 181
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.51 E-value=6e-06 Score=79.89 Aligned_cols=178 Identities=23% Similarity=0.254 Sum_probs=108.5
Q ss_pred CCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcC
Q 010640 182 NYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAG 260 (505)
Q Consensus 182 ~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaG 260 (505)
..+..++++.+.+.+.+.+-|+|- +..-|--.--++++.... .....+.++..+. ..+.++.+.+.|
T Consensus 29 ~~~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~--------~~~~pv~~~GGI~----~~ed~~~~~~~G 96 (233)
T PRK00748 29 SDDPVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVK--------AVDIPVQVGGGIR----SLETVEALLDAG 96 (233)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHH--------HCCCCEEEcCCcC----CHHHHHHHHHcC
Confidence 346788888999999999999986 544442222222322211 1112344444553 456778888899
Q ss_pred ccEEEEeCCCCCchhHHHHHHHHHHhCCC-ceEEE--c-------------ccCCHHHHHHHHHcCCCEEEEccCCccee
Q 010640 261 VNVVVLDSSQGNSSFQIEMIKYAKKTYPE-LDVIG--G-------------NVVTMYQAQNLIEAGVDGLRVGMGSGSIC 324 (505)
Q Consensus 261 ad~I~i~~~~g~~~~~~~~i~~l~~~~~~-~~Vi~--g-------------~V~t~e~a~~l~~aGad~I~v~~g~g~~~ 324 (505)
++.+.+....-.. .+.++.+.+.++. +.+-+ + .....+.++.+.+.|++.+.+- .
T Consensus 97 a~~vilg~~~l~~---~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~------~ 167 (233)
T PRK00748 97 VSRVIIGTAAVKN---PELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYT------D 167 (233)
T ss_pred CCEEEECchHHhC---HHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEe------e
Confidence 9998875432111 2234444444422 11111 0 0112566788888999976542 1
Q ss_pred ecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEeccccc
Q 010640 325 TTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMGSFLA 384 (505)
Q Consensus 325 ~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G~~f~ 384 (505)
.++.-...| +....+.++.+ ..++|+|+.|||.+..|+.+++..| |++|++|+.|.
T Consensus 168 ~~~~g~~~G-~d~~~i~~l~~---~~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~ 224 (233)
T PRK00748 168 ISRDGTLSG-PNVEATRELAA---AVPIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALY 224 (233)
T ss_pred ecCcCCcCC-CCHHHHHHHHH---hCCCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHH
Confidence 122222233 44555555544 3469999999999999999999999 99999999985
No 182
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.49 E-value=7.4e-06 Score=79.27 Aligned_cols=174 Identities=18% Similarity=0.166 Sum_probs=106.6
Q ss_pred CCHHHHHHHHHHCCCCeeEEeeC-C--eeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHc
Q 010640 183 YDLGQIDEVLEKNDVDFVVLEKD-G--ERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKA 259 (505)
Q Consensus 183 ~~l~~a~~~l~~~~i~~lpVvd~-g--~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~liea 259 (505)
.+..++++.+.+.+.+.+-|+|= + ..-|. ..++++.... ..+..+.++..+. ..+.++.+.+.
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~--n~~~~~~i~~--------~~~~pv~~~ggi~----~~~d~~~~~~~ 95 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDASKRGREP--LFELISNLAE--------ECFMPLTVGGGIR----SLEDAKKLLSL 95 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCcccCCCC--CHHHHHHHHH--------hCCCCEEEECCCC----CHHHHHHHHHc
Confidence 36788899999999999999974 2 11121 1222332211 1122344554543 44566667888
Q ss_pred CccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE--c---------------------ccCCHHHHHHHHHcCCCEEEE
Q 010640 260 GVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG--G---------------------NVVTMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 260 Gad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~--g---------------------~V~t~e~a~~l~~aGad~I~v 316 (505)
|++.+.+....-. ..+.++.+.+.++.-.+++ . .....+.++.+.++|+|.+.+
T Consensus 96 G~~~vilg~~~l~---~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i 172 (232)
T TIGR03572 96 GADKVSINTAALE---NPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILL 172 (232)
T ss_pred CCCEEEEChhHhc---CHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEE
Confidence 9999988543211 1345566666653211221 1 011357778999999999987
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHH-HHHhCCCEEEecccc
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVK-ALVLGASTVMMGSFL 383 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~k-al~lGA~~V~~G~~f 383 (505)
.. .++.-...| +.+..+..++ +..++||+++|||.+..|+.+ +...||++|++|++|
T Consensus 173 ~~------i~~~g~~~g-~~~~~~~~i~---~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 173 NS------IDRDGTMKG-YDLELIKTVS---DAVSIPVIALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred eC------CCccCCcCC-CCHHHHHHHH---hhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 52 011111112 3344444443 345799999999999999999 667999999999998
No 183
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=98.47 E-value=2.5e-06 Score=79.39 Aligned_cols=122 Identities=30% Similarity=0.347 Sum_probs=80.3
Q ss_pred HHHHHHcCccEEEEeCCCCCc-hhHHHHHHHHHHhCCCceEEEcccCCHHHHHH-HHHcCCCEEEEccCCcceeeccccc
Q 010640 253 LEHLVKAGVNVVVLDSSQGNS-SFQIEMIKYAKKTYPELDVIGGNVVTMYQAQN-LIEAGVDGLRVGMGSGSICTTQEVC 330 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g~~-~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~-l~~aGad~I~v~~g~g~~~~~~~~~ 330 (505)
+..+.+.|+|.+.++..++.. ....+.++.+++.+++.+++++-....+.... +.+.|+|++.+..+.++....
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~---- 152 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGR---- 152 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCc----
Confidence 457788999999998776531 23567778888877677887753322221122 678999999886432211110
Q ss_pred ccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecc
Q 010640 331 AVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGS 381 (505)
Q Consensus 331 g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~ 381 (505)
. +...............++||+++|||.++.++.+++.+|||+|++|+
T Consensus 153 --~-~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 153 --D-AVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred --c-CchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 0 11101111222233457999999999999999999999999999996
No 184
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.47 E-value=3.3e-07 Score=96.23 Aligned_cols=171 Identities=17% Similarity=0.219 Sum_probs=120.4
Q ss_pred CeeeeeeecCcccccceEEEccch------hhhHHHHHHHHHHcCCeeEEcC-CCCHHHHHHHHHhhhccCCccccCCCe
Q 010640 42 AVSLSTRLTRNIDLSLPCVASPMD------TVTEDYMAAAMAALGGIGIVHS-NCTAADQARLVVSAKSRRVPIFSSSLD 114 (505)
Q Consensus 42 ~~~~~~~lt~~~~l~~Pli~a~m~------~vt~~~ma~al~~~Gg~g~i~~-~~~~~~~~~~v~~v~~~~~~~~~~p~~ 114 (505)
-|-+-.||||.+++.+|+|.+.|- ......++-+.-..+|.+++.. +...+.....+.+..+. ++.-
T Consensus 485 lVVImFELTG~l~~IlPlm~av~~SkwI~d~~gk~gIyda~I~~ng~P~l~~k~e~~~t~~~~v~~p~~~------~~~L 558 (696)
T KOG0475|consen 485 LVVIMFELTGALNYILPLMLAVMISKWIGDGLGKTGIYDAHIELNGYPFLDSKSEFSSTLAIPVMEPCRS------ESCL 558 (696)
T ss_pred EEEEeeeccCcceeHHHHHHHHHHHHHHHhccccchHHHHHHHhcCCCCcccccccccchhhhhhchhcC------chhh
Confidence 345669999999999999998872 2222335556666777776631 11111122222222222 2211
Q ss_pred eEeCC-CCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccc--c-----------------c---------cc
Q 010640 115 VFKAP-DGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWEN--L-----------------S---------DN 162 (505)
Q Consensus 115 ~~v~~-~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~--~-----------------~---------~~ 162 (505)
.++.. .++++|...+|++ .+ +||+-+ ++.++++|+|.++|+.. . . ..
T Consensus 559 ~~i~~~s~tl~~le~~~~~t~~sgfpvvl~-~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~~ 637 (696)
T KOG0475|consen 559 IVITQDSMTLEDLESLMEDTDFSGFPVVLS-EDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIPS 637 (696)
T ss_pred eeccccceeHHHHHHHHhhcccCCceEEEc-cccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCCC
Confidence 34444 4899999999999 77 887643 12788999999999741 0 0 12
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
...++++|.. .+.++...++.+.+++++++.+++.+.|..+|++.|+||++|++...
T Consensus 638 ~~~lk~il~~--tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 638 RLDLKDILDM--TPFTVTDLTPMETVVDLFRKLGLRQILVTKNGILLGIITKKDCLRHT 694 (696)
T ss_pred CcCceeeccC--CcccccccCcHHHHHHHHHhhCceEEEEccCCeeEeeeehHHHHHhh
Confidence 2357888988 89999999999999999999999999998889999999999999864
No 185
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=98.46 E-value=3.8e-06 Score=78.73 Aligned_cols=110 Identities=26% Similarity=0.366 Sum_probs=90.9
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCccee
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSIC 324 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~ 324 (505)
.+++..+.++.+.+.|++++.++.... ...+.++.+++.+|++.+.+|++.+.+.+..+.++|+|++..+.
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~~---~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~------ 84 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRTP---GALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPG------ 84 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCh---hHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCC------
Confidence 355677889999999999999987644 36778899999988788999999999999999999999994321
Q ss_pred ecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 325 TTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 325 ~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
.. .++.+.++..+.+++. |+.|..++.+|+.+|||.+++
T Consensus 85 ----------~~----~~~~~~~~~~~~~~i~--gv~t~~e~~~A~~~Gad~i~~ 123 (190)
T cd00452 85 ----------LD----PEVVKAANRAGIPLLP--GVATPTEIMQALELGADIVKL 123 (190)
T ss_pred ----------CC----HHHHHHHHHcCCcEEC--CcCCHHHHHHHHHCCCCEEEE
Confidence 00 2345556667899999 999999999999999999997
No 186
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.46 E-value=2.9e-06 Score=86.43 Aligned_cols=137 Identities=24% Similarity=0.245 Sum_probs=90.3
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC------------------------chhHHHHHHHHHHhC-CCceEEEccc-----
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN------------------------SSFQIEMIKYAKKTY-PELDVIGGNV----- 297 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~------------------------~~~~~~~i~~l~~~~-~~~~Vi~g~V----- 297 (505)
++.+.++.+.++|.|.|.|+..+|+ .....+.++.+++.+ ++.+|.++--
T Consensus 142 ~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~ 221 (327)
T cd02803 142 DFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFV 221 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccC
Confidence 3666777888899999999886542 122467888888887 4667776311
Q ss_pred ---CCHH----HHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHH
Q 010640 298 ---VTMY----QAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKAL 370 (505)
Q Consensus 298 ---~t~e----~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal 370 (505)
.+.+ .++.+.++|+|+|.++.+...... ........+....+..+.+..+..++||++.|||.++.++.+++
T Consensus 222 ~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~-~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l 300 (327)
T cd02803 222 PGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPP-PIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEIL 300 (327)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccc-cccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHH
Confidence 1333 367788899999998743221100 00000000111122233333444579999999999999999999
Q ss_pred Hh-CCCEEEecccccC
Q 010640 371 VL-GASTVMMGSFLAG 385 (505)
Q Consensus 371 ~l-GA~~V~~G~~f~~ 385 (505)
.. |||+|++|++|+.
T Consensus 301 ~~g~aD~V~igR~~la 316 (327)
T cd02803 301 AEGKADLVALGRALLA 316 (327)
T ss_pred HCCCCCeeeecHHHHh
Confidence 98 7999999999875
No 187
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.38 E-value=1.9e-05 Score=77.61 Aligned_cols=176 Identities=16% Similarity=0.159 Sum_probs=107.4
Q ss_pred CCHHHHHHHHHHCCCCeeEEeeC---CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHc
Q 010640 183 YDLGQIDEVLEKNDVDFVVLEKD---GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKA 259 (505)
Q Consensus 183 ~~l~~a~~~l~~~~i~~lpVvd~---g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~liea 259 (505)
.+..+.++.+.+.+.+.+-|+|= +...| .-.++++.... .....+.++..+. ..+.++.+.+.
T Consensus 30 ~dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~--~n~~~i~~i~~--------~~~~pv~~gGGi~----s~~d~~~l~~~ 95 (258)
T PRK01033 30 GDPINAVRIFNEKEVDELIVLDIDASKRGSE--PNYELIENLAS--------ECFMPLCYGGGIK----TLEQAKKIFSL 95 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCCCc--ccHHHHHHHHH--------hCCCCEEECCCCC----CHHHHHHHHHC
Confidence 36788899999999999999973 22222 22333433321 1112234444443 34667777788
Q ss_pred CccEEEEeCCCCCchhHHHHHHHHHHhCCC--ceEEE----c----------------ccCCHHHHHHHHHcCCCEEEEc
Q 010640 260 GVNVVVLDSSQGNSSFQIEMIKYAKKTYPE--LDVIG----G----------------NVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 260 Gad~I~i~~~~g~~~~~~~~i~~l~~~~~~--~~Vi~----g----------------~V~t~e~a~~l~~aGad~I~v~ 317 (505)
|++.+.+.+..-. ..+.++.+.+.++. +.+-+ | .....+.++.+.+.|++.+.+-
T Consensus 96 G~~~vvigs~~~~---~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~ 172 (258)
T PRK01033 96 GVEKVSINTAALE---DPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLN 172 (258)
T ss_pred CCCEEEEChHHhc---CHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEE
Confidence 9999988543211 12445555555421 21111 1 1123466788889999988662
Q ss_pred cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHH-HhCCCEEEecccccC
Q 010640 318 MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKAL-VLGASTVMMGSFLAG 385 (505)
Q Consensus 318 ~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal-~lGA~~V~~G~~f~~ 385 (505)
..++.-..-| |..+.+.++.+ ..++|||++|||.+.+|+.+++ ..|+++|.+|++|..
T Consensus 173 ------~i~~~G~~~G-~d~~~i~~~~~---~~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~ 231 (258)
T PRK01033 173 ------SIDRDGTMKG-YDLELLKSFRN---ALKIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVF 231 (258)
T ss_pred ------ccCCCCCcCC-CCHHHHHHHHh---hCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeee
Confidence 0111111112 45555555544 3579999999999999999999 899999999999954
No 188
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.36 E-value=2.1e-05 Score=76.68 Aligned_cols=175 Identities=20% Similarity=0.217 Sum_probs=103.7
Q ss_pred CCHHHHHHHHHHCCCCeeEEeeC-Ce--eeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHc
Q 010640 183 YDLGQIDEVLEKNDVDFVVLEKD-GE--RLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKA 259 (505)
Q Consensus 183 ~~l~~a~~~l~~~~i~~lpVvd~-g~--l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~liea 259 (505)
....+.++.+.+.+.+.+-++|= +. --|. --++++... ...+..+.++..+. ..+.++.+++.
T Consensus 27 ~d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~--~~~~i~~i~--------~~~~~pv~~~GGI~----s~~d~~~~l~~ 92 (243)
T cd04731 27 GDPVELAKRYNEQGADELVFLDITASSEGRET--MLDVVERVA--------EEVFIPLTVGGGIR----SLEDARRLLRA 92 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEEcCCcccccCcc--cHHHHHHHH--------HhCCCCEEEeCCCC----CHHHHHHHHHc
Confidence 36778888999999999998874 21 1111 111222221 11122344444543 34666777788
Q ss_pred CccEEEEeCCCCCchhHHHHHHHHHHhCCC--ceEEE--c------------------ccCCHHHHHHHHHcCCCEEEEc
Q 010640 260 GVNVVVLDSSQGNSSFQIEMIKYAKKTYPE--LDVIG--G------------------NVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 260 Gad~I~i~~~~g~~~~~~~~i~~l~~~~~~--~~Vi~--g------------------~V~t~e~a~~l~~aGad~I~v~ 317 (505)
|++.+.+....-.. .+.+..+.+.++. +.+-+ + ...+.+.++.+.+.|+|++.+.
T Consensus 93 G~~~v~ig~~~~~~---p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~ 169 (243)
T cd04731 93 GADKVSINSAAVEN---PELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLT 169 (243)
T ss_pred CCceEEECchhhhC---hHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEe
Confidence 99998875433221 2334444444421 22111 1 2234567788999999999874
Q ss_pred cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHh-CCCEEEeccccc
Q 010640 318 MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVL-GASTVMMGSFLA 384 (505)
Q Consensus 318 ~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~l-GA~~V~~G~~f~ 384 (505)
. .++.-..-| +....+..+ .+..++|||++|||.++.|+.+++.. ||++|++|++|.
T Consensus 170 ~------i~~~g~~~g-~~~~~i~~i---~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~ 227 (243)
T cd04731 170 S------MDRDGTKKG-YDLELIRAV---SSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFH 227 (243)
T ss_pred c------cCCCCCCCC-CCHHHHHHH---HhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHH
Confidence 1 001000111 223333333 33457999999999999999999997 999999999984
No 189
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.36 E-value=6.1e-06 Score=79.66 Aligned_cols=134 Identities=22% Similarity=0.347 Sum_probs=89.7
Q ss_pred ccHHHHHHHHHHcCccEEEE-eC--CCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEcc----
Q 010640 247 ESDKERLEHLVKAGVNVVVL-DS--SQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVGM---- 318 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i-~~--~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~~---- 318 (505)
.+..+.++.+.+.|++.+.+ |. .........+.++.+.+.+ .+|+.+ |++.+.++++.+.++|++.++++.
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~~-~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~ 107 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAAKEGRGSNLELIKEIAKET-GIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALE 107 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHHS-SSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCcccCchhHHHHHHHHHhcC-CccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhh
Confidence 45778888888889999866 33 3212234678888888887 688877 688999999999999999998864
Q ss_pred ------------CC-----------c-cee----------------------------ecc-cccccC-cChHHHHHHHH
Q 010640 319 ------------GS-----------G-SIC----------------------------TTQ-EVCAVG-RGQATAVYKVS 344 (505)
Q Consensus 319 ------------g~-----------g-~~~----------------------------~~~-~~~g~g-~p~~~~l~~v~ 344 (505)
|. | .+. .+. ...|.. .|.++.+..++
T Consensus 108 ~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~~~~l~ 187 (229)
T PF00977_consen 108 DPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQGPDLELLKQLA 187 (229)
T ss_dssp CCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS--HHHHHHHH
T ss_pred chhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCCCCHHHHHHHH
Confidence 11 1 000 000 011221 14444444443
Q ss_pred HHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 345 SIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 345 ~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+ ..++|+|++|||.+..|+.++...|+++|.+|++|.
T Consensus 188 ~---~~~~~viasGGv~~~~Dl~~l~~~G~~gvivg~al~ 224 (229)
T PF00977_consen 188 E---AVNIPVIASGGVRSLEDLRELKKAGIDGVIVGSALH 224 (229)
T ss_dssp H---HHSSEEEEESS--SHHHHHHHHHTTECEEEESHHHH
T ss_pred H---HcCCCEEEecCCCCHHHHHHHHHCCCcEEEEehHhh
Confidence 3 347999999999999999999999999999999983
No 190
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=98.36 E-value=7.2e-06 Score=82.65 Aligned_cols=131 Identities=19% Similarity=0.140 Sum_probs=90.6
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCC---------------CchhHHHHHHHHHHhCC-CceEEEc---ccC----CHH
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQG---------------NSSFQIEMIKYAKKTYP-ELDVIGG---NVV----TMY 301 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g---------------~~~~~~~~i~~l~~~~~-~~~Vi~g---~V~----t~e 301 (505)
.++...+.+..+.+.|.|.|.++..+. ++....+.++.+++.++ ++||.++ +.. ..+
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~ 152 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFE 152 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHH
Confidence 344566667778888999999987542 12345667777788764 5888886 222 245
Q ss_pred HHHHHHHcCCCEEEEccCCcceeecccccccCcC--hHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHH-hCCCEEE
Q 010640 302 QAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRG--QATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALV-LGASTVM 378 (505)
Q Consensus 302 ~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p--~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~-lGA~~V~ 378 (505)
-++.+.++|+|+|.|.. ... ..++..| ....+..+.+ ..++|||+.|||.++.|+.+++. -|||+||
T Consensus 153 ~a~~l~~~Gvd~i~Vh~--Rt~-----~~~y~g~~~~~~~i~~ik~---~~~iPVi~nGdI~t~~da~~~l~~~g~DgVm 222 (312)
T PRK10550 153 IADAVQQAGATELVVHG--RTK-----EDGYRAEHINWQAIGEIRQ---RLTIPVIANGEIWDWQSAQQCMAITGCDAVM 222 (312)
T ss_pred HHHHHHhcCCCEEEECC--CCC-----ccCCCCCcccHHHHHHHHh---hcCCcEEEeCCcCCHHHHHHHHhccCCCEEE
Confidence 66888899999998842 111 1122222 2334444443 45799999999999999999995 7899999
Q ss_pred ecccccC
Q 010640 379 MGSFLAG 385 (505)
Q Consensus 379 ~G~~f~~ 385 (505)
+|+.++.
T Consensus 223 iGRg~l~ 229 (312)
T PRK10550 223 IGRGALN 229 (312)
T ss_pred EcHHhHh
Confidence 9998875
No 191
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.35 E-value=1.1e-05 Score=79.01 Aligned_cols=133 Identities=20% Similarity=0.338 Sum_probs=92.8
Q ss_pred cHHHHHHHHHHcCccEEEEeCCC---CCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEccCC---
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQ---GNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVGMGS--- 320 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~---g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~~g~--- 320 (505)
+..+.++.+.+.|++.+.++.-. ......++.++.+++.. ++|+++ |++.+.++++.+...|++.+.++...
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~-~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~~ 109 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQV-FIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVAN 109 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHhC-CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhhC
Confidence 46788888889999998775422 12345688888888876 788877 78999999999999999999886410
Q ss_pred -----------c--c--eeec-----------------------c------c----------ccccCc------ChHHHH
Q 010640 321 -----------G--S--ICTT-----------------------Q------E----------VCAVGR------GQATAV 340 (505)
Q Consensus 321 -----------g--~--~~~~-----------------------~------~----------~~g~g~------p~~~~l 340 (505)
| . .+.. . . ..+++. +.+..+
T Consensus 110 p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i 189 (253)
T PRK02083 110 PELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGYDLELT 189 (253)
T ss_pred cHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHH
Confidence 0 0 0000 0 0 000000 112233
Q ss_pred HHHHHHHhhcCCcEEecCCCCCHHHHHHHHHh-CCCEEEeccccc
Q 010640 341 YKVSSIAAQSGVPVIADGGISNSGHIVKALVL-GASTVMMGSFLA 384 (505)
Q Consensus 341 ~~v~~~~~~~~ipvIa~GGI~~~~di~kal~l-GA~~V~~G~~f~ 384 (505)
. +.++..++|||++|||.+..|+.+++.. ||++|++|++|.
T Consensus 190 ~---~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~ 231 (253)
T PRK02083 190 R---AVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFH 231 (253)
T ss_pred H---HHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHH
Confidence 3 3333457999999999999999999975 999999999984
No 192
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.34 E-value=1.2e-05 Score=76.61 Aligned_cols=125 Identities=23% Similarity=0.246 Sum_probs=79.3
Q ss_pred cHHHHHHHHHHc-CccEEEEeC--CCC-CchhHHHHHHHHHHhC-CCceEEEcccCCHHHHHHHHHcCCCEEEE--c-cC
Q 010640 248 SDKERLEHLVKA-GVNVVVLDS--SQG-NSSFQIEMIKYAKKTY-PELDVIGGNVVTMYQAQNLIEAGVDGLRV--G-MG 319 (505)
Q Consensus 248 ~~~e~~~~liea-Gad~I~i~~--~~g-~~~~~~~~i~~l~~~~-~~~~Vi~g~V~t~e~a~~l~~aGad~I~v--~-~g 319 (505)
+....++...|. +-++|-+.. ... ......+.++..+... .+..++.=...++..++++.++|+++|.. + +|
T Consensus 77 eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIG 156 (250)
T PRK00208 77 EAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIG 156 (250)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCC
Confidence 344444444443 566664432 111 1123444444444432 14444422567899999999999999944 1 22
Q ss_pred CcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 320 SGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 320 ~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.|.|+.....+..+.+. .++|||++|||.+++|+.+|+.+|||+|++|+.+..
T Consensus 157 ----------sg~gi~~~~~i~~i~e~---~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItk 209 (250)
T PRK00208 157 ----------SGLGLLNPYNLRIIIEQ---ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAV 209 (250)
T ss_pred ----------CCCCCCCHHHHHHHHHh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhC
Confidence 22344344445444442 479999999999999999999999999999999863
No 193
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=98.34 E-value=1.2e-05 Score=76.06 Aligned_cols=110 Identities=19% Similarity=0.206 Sum_probs=88.9
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCC-CceEEEcccCCHHHHHHHHHcCCCEEEEccCCcce
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYP-ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSI 323 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~-~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~ 323 (505)
+.++..+.++.+++.|+.++++..... ...+.++.+++.++ ++.|.+|+|.+.++++.+.++|++++....
T Consensus 20 ~~~~~~~~~~a~~~gGi~~iEvt~~~~---~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~----- 91 (206)
T PRK09140 20 TPDEALAHVGALIEAGFRAIEIPLNSP---DPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPN----- 91 (206)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCc---cHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCC-----
Confidence 345677889999999999999976433 45678888888886 478899999999999999999999995421
Q ss_pred eecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 324 CTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 324 ~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
. . .++.+.+...+++++. |+.|+.++.+|..+|||.+.+
T Consensus 92 ---~--------~----~~v~~~~~~~~~~~~~--G~~t~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 92 ---T--------D----PEVIRRAVALGMVVMP--GVATPTEAFAALRAGAQALKL 130 (206)
T ss_pred ---C--------C----HHHHHHHHHCCCcEEc--ccCCHHHHHHHHHcCCCEEEE
Confidence 0 0 1334556667899999 799999999999999999986
No 194
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=98.34 E-value=7e-06 Score=83.69 Aligned_cols=136 Identities=15% Similarity=0.108 Sum_probs=86.1
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCC---------------CchhHHHHHHHHHHhCCCceEEEcc---cC---C----
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQG---------------NSSFQIEMIKYAKKTYPELDVIGGN---VV---T---- 299 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g---------------~~~~~~~~i~~l~~~~~~~~Vi~g~---V~---t---- 299 (505)
.++...+.++.+.+.|+|.|.++..+. ++....+.++.+++.. +.||.++. +. +
T Consensus 75 ~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v-~~pVsvKiR~g~~~~~t~~~~ 153 (333)
T PRK11815 75 DPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAV-SIPVTVKHRIGIDDQDSYEFL 153 (333)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHc-CCceEEEEEeeeCCCcCHHHH
Confidence 345566677777778999999986432 1234567777787775 67776642 11 1
Q ss_pred HHHHHHHHHcCCCEEEEccCCcceeecccccccCcC--hHHHHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHHHhCCCE
Q 010640 300 MYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRG--QATAVYKVSSIAAQS-GVPVIADGGISNSGHIVKALVLGAST 376 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p--~~~~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal~lGA~~ 376 (505)
.+-++.+.++|+|++.+....+.........+...| ....+..+ .+.. ++|||+.|||.++.|+.+++. |||+
T Consensus 154 ~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v---~~~~~~iPVI~nGgI~s~eda~~~l~-~aDg 229 (333)
T PRK11815 154 CDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRL---KRDFPHLTIEINGGIKTLEEAKEHLQ-HVDG 229 (333)
T ss_pred HHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHH---HHhCCCCeEEEECCcCCHHHHHHHHh-cCCE
Confidence 344677888999999874211100000000000111 12333333 3333 699999999999999999997 7999
Q ss_pred EEecccccC
Q 010640 377 VMMGSFLAG 385 (505)
Q Consensus 377 V~~G~~f~~ 385 (505)
||+|+.++.
T Consensus 230 VmIGRa~l~ 238 (333)
T PRK11815 230 VMIGRAAYH 238 (333)
T ss_pred EEEcHHHHh
Confidence 999998764
No 195
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.32 E-value=1.7e-05 Score=77.78 Aligned_cols=178 Identities=17% Similarity=0.181 Sum_probs=107.5
Q ss_pred CCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcC
Q 010640 182 NYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAG 260 (505)
Q Consensus 182 ~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaG 260 (505)
..+..+.++.+.+.+.+.+-|+|= +.-.+-=.--++++... +..+..+.++..+. ..+.++.+++.|
T Consensus 29 ~~dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~--------~~~~~pv~~~GGi~----s~~d~~~~~~~G 96 (254)
T TIGR00735 29 AGDPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTA--------ETVFIPLTVGGGIK----SIEDVDKLLRAG 96 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHH--------HhcCCCEEEECCCC----CHHHHHHHHHcC
Confidence 346778889999999999999974 22100001111222221 11122344544553 456777788899
Q ss_pred ccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE------c-------------------ccCCHHHHHHHHHcCCCEEE
Q 010640 261 VNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG------G-------------------NVVTMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 261 ad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~------g-------------------~V~t~e~a~~l~~aGad~I~ 315 (505)
++.+.+.+..-. ..+.++.+.+.|+.-.+++ | +....+.++.+.++|++.|.
T Consensus 97 a~~vivgt~~~~---~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~ii 173 (254)
T TIGR00735 97 ADKVSINTAAVK---NPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEIL 173 (254)
T ss_pred CCEEEEChhHhh---ChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEE
Confidence 999988543211 1345555666663111111 1 11235667889999999998
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEeccccc
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMGSFLA 384 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G~~f~ 384 (505)
+.. ..+.-.. +.+.+..+..+++ ..++|||++|||++..|+.+++..| |++|++|++|.
T Consensus 174 vt~------i~~~g~~-~g~~~~~~~~i~~---~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~ 233 (254)
T TIGR00735 174 LTS------MDKDGTK-SGYDLELTKAVSE---AVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFH 233 (254)
T ss_pred EeC------cCcccCC-CCCCHHHHHHHHH---hCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHh
Confidence 741 0111111 1234444444443 4579999999999999999999999 99999999883
No 196
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.31 E-value=3.9e-07 Score=84.95 Aligned_cols=116 Identities=14% Similarity=0.139 Sum_probs=99.2
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccc-ccc--cccccccccccCCCc
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWEN-LSD--NKVKIFDYMRDCSSN 176 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~-~~~--~~~~v~~im~~~~~~ 176 (505)
++.++|++..+.++++.+.++.+++..+.+ .+ |||+.++ ...+.||+-.+||+. ... ....+.++.+ +.
T Consensus 68 ~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed--kD~v~GIL~AKDLL~~~~~~~~~F~i~~lLR---Pa 142 (293)
T COG4535 68 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED--KDHVEGILLAKDLLPFMRSDAEPFDIKELLR---PA 142 (293)
T ss_pred hHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCC--chhhhhhhhHHHHHHHhcCCcccccHHHhcc---cc
Confidence 566788887777899999999999999988 77 9999764 678999999999973 222 2345677766 68
Q ss_pred eEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcC
Q 010640 177 VSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGY 223 (505)
Q Consensus 177 ~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~ 223 (505)
+.++++-.+...++-|+..+-+...|||+ |.+-|+||.+||++.+..
T Consensus 143 v~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVG 190 (293)
T COG4535 143 VVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVG 190 (293)
T ss_pred eecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhc
Confidence 89999999999999999999999999999 999999999999998653
No 197
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.31 E-value=1.7e-05 Score=75.62 Aligned_cols=127 Identities=22% Similarity=0.202 Sum_probs=80.4
Q ss_pred HHHHHHHHHHc-CccEEEEeC--CCC-CchhHHHHHHHHHHhC-CCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcce
Q 010640 249 DKERLEHLVKA-GVNVVVLDS--SQG-NSSFQIEMIKYAKKTY-PELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSI 323 (505)
Q Consensus 249 ~~e~~~~liea-Gad~I~i~~--~~g-~~~~~~~~i~~l~~~~-~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~ 323 (505)
....++...+. +-++|-+.. ... ......+.++..+... .+..++.=...++..++.+.++|++++..- |+.
T Consensus 78 Av~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPl---g~p 154 (248)
T cd04728 78 AVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPL---GSP 154 (248)
T ss_pred HHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCC---CcC
Confidence 44444445554 567764432 211 1123444454444432 144444225679999999999999999441 010
Q ss_pred eecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 324 CTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 324 ~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.-.|.|+.....+..+++. .++|||++|||.+++|+.+|+.+||++|++||.+..
T Consensus 155 ----IGsg~Gi~~~~~I~~I~e~---~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~ 209 (248)
T cd04728 155 ----IGSGQGLLNPYNLRIIIER---ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAK 209 (248)
T ss_pred ----CCCCCCCCCHHHHHHHHHh---CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcC
Confidence 0122344445555544442 469999999999999999999999999999999863
No 198
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.30 E-value=1.7e-06 Score=89.27 Aligned_cols=107 Identities=13% Similarity=0.100 Sum_probs=90.5
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc--------ccc---cccccccccCCCceEec
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS--------DNK---VKIFDYMRDCSSNVSVP 180 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~--------~~~---~~v~~im~~~~~~~~v~ 180 (505)
..+..+.++.+|+++|.+ ++ +||+++ .|+.+|.++..|+.... ... ......+...+.++++.
T Consensus 240 ~~i~~~~~v~~al~~m~~~~is~lpvV~~---~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc~ 316 (381)
T KOG1764|consen 240 ASISEDTPVIEALKIMSERRISALPVVDE---NGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTCR 316 (381)
T ss_pred eeecCCCcHHHHHHHHHhcCcCcceEEcC---CCceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEEe
Confidence 789999999999999999 77 999998 88889999999997332 111 12233344555789999
Q ss_pred CCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCC
Q 010640 181 ANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYP 224 (505)
Q Consensus 181 ~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~ 224 (505)
++.++.++++.|..++++++.|||+ |.++|+||..|++......
T Consensus 317 ~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~ 361 (381)
T KOG1764|consen 317 PTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLT 361 (381)
T ss_pred ecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhC
Confidence 9999999999999999999999999 9999999999999987653
No 199
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.30 E-value=2.5e-05 Score=75.76 Aligned_cols=132 Identities=21% Similarity=0.268 Sum_probs=91.4
Q ss_pred ccHHHHHHHHHHcCccEEEE-eCC--CCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEccCC--
Q 010640 247 ESDKERLEHLVKAGVNVVVL-DSS--QGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVGMGS-- 320 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i-~~~--~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~~g~-- 320 (505)
.+..+.++.+.+.|++.+++ |.. ........+.++.+.+.+ .|+.+ |++.+.++++.+.++|++.++++...
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~--~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~ 107 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEFA--EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLE 107 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhhc--CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhC
Confidence 35778888888999998866 443 222234577888887775 57765 68899999999999999998876310
Q ss_pred -----------------------ccee----------------------------ecc-cccccC-cChHHHHHHHHHHH
Q 010640 321 -----------------------GSIC----------------------------TTQ-EVCAVG-RGQATAVYKVSSIA 347 (505)
Q Consensus 321 -----------------------g~~~----------------------------~~~-~~~g~g-~p~~~~l~~v~~~~ 347 (505)
|.+. .+. ...|.. .|.++.+..+++
T Consensus 108 ~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~d~el~~~l~~-- 185 (241)
T PRK14114 108 DPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTRKIAI-- 185 (241)
T ss_pred CHHHHHHHHHhCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCCcCHHHHHHHHH--
Confidence 0000 000 011111 144444444433
Q ss_pred hhcCCcEEecCCCCCHHHHHHHHHh-----C-CCEEEecccc
Q 010640 348 AQSGVPVIADGGISNSGHIVKALVL-----G-ASTVMMGSFL 383 (505)
Q Consensus 348 ~~~~ipvIa~GGI~~~~di~kal~l-----G-A~~V~~G~~f 383 (505)
..++|||++||+++..|+.++..+ | +++|.+|++|
T Consensus 186 -~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al 226 (241)
T PRK14114 186 -EAEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAF 226 (241)
T ss_pred -HCCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHH
Confidence 357999999999999999999997 6 9999999998
No 200
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=98.28 E-value=1.6e-05 Score=80.41 Aligned_cols=135 Identities=13% Similarity=0.111 Sum_probs=86.6
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCC---------------chhHHHHHHHHHHhCCCceEEEcc---cC---C----
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGN---------------SSFQIEMIKYAKKTYPELDVIGGN---VV---T---- 299 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~---------------~~~~~~~i~~l~~~~~~~~Vi~g~---V~---t---- 299 (505)
.++...+.++.+.+.|+|.|.++..+.. +....+.++.+++.. ++||.+|- .. +
T Consensus 65 ~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~-~~PVsvKiR~g~~~~~~~~~~ 143 (318)
T TIGR00742 65 DPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAV-NIPVTVKHRIGIDPLDSYEFL 143 (318)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHh-CCCeEEEEecCCCCcchHHHH
Confidence 3445566666666779999999875421 133567777777765 67888863 21 1
Q ss_pred HHHHHHHHHcCCCEEEEccCCcceeecccccc---cCcChHHHHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHHHhCCC
Q 010640 300 MYQAQNLIEAGVDGLRVGMGSGSICTTQEVCA---VGRGQATAVYKVSSIAAQS-GVPVIADGGISNSGHIVKALVLGAS 375 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g---~g~p~~~~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal~lGA~ 375 (505)
.+.++.+.++|+++|.+- +.... .+...+ ...+.. ....+.+..+.. ++|||+.|||.+.+|+.+.+. |||
T Consensus 144 ~~~~~~l~~~G~~~itvH--gRt~~-~qg~sg~~~~~~~~~-~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~d 218 (318)
T TIGR00742 144 CDFVEIVSGKGCQNFIVH--ARKAW-LSGLSPKENREIPPL-RYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVD 218 (318)
T ss_pred HHHHHHHHHcCCCEEEEe--CCchh-hcCCCccccccCCch-hHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCC
Confidence 234678889999999773 22110 000110 011211 112233443444 699999999999999999996 999
Q ss_pred EEEecccccC
Q 010640 376 TVMMGSFLAG 385 (505)
Q Consensus 376 ~V~~G~~f~~ 385 (505)
+||+|+.++.
T Consensus 219 gVMigRgal~ 228 (318)
T TIGR00742 219 GVMVGREAYE 228 (318)
T ss_pred EEEECHHHHh
Confidence 9999998764
No 201
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=98.28 E-value=4.1e-05 Score=72.31 Aligned_cols=122 Identities=25% Similarity=0.271 Sum_probs=84.6
Q ss_pred HHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE--cccCCHHHHHHHHHcCCCEEEEccCCcceeeccc
Q 010640 251 ERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG--GNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQE 328 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~--g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~ 328 (505)
..++.+.++|++.+.++...+. ....+.++.+++. ++++++ -+..|++++..+...|+|++.+..+ . ...
T Consensus 68 ~~~~~~~~aGad~i~~h~~~~~-~~~~~~i~~~~~~--g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~--~---~~~ 139 (202)
T cd04726 68 LEAEMAFKAGADIVTVLGAAPL-STIKKAVKAAKKY--GKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRG--I---DAQ 139 (202)
T ss_pred HHHHHHHhcCCCEEEEEeeCCH-HHHHHHHHHHHHc--CCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCc--c---ccc
Confidence 4567889999999999775432 2345566666665 677764 4777888888888899999877311 0 000
Q ss_pred ccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 329 VCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 329 ~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
..+ .......+..+.+. .++|++++|||. +.++.+++..||+++.+|+.+..
T Consensus 140 ~~~-~~~~~~~i~~~~~~---~~~~i~~~GGI~-~~~i~~~~~~Gad~vvvGsai~~ 191 (202)
T cd04726 140 AAG-GWWPEDDLKKVKKL---LGVKVAVAGGIT-PDTLPEFKKAGADIVIVGRAITG 191 (202)
T ss_pred ccC-CCCCHHHHHHHHhh---cCCCEEEECCcC-HHHHHHHHhcCCCEEEEeehhcC
Confidence 111 11233444444332 569999999995 99999999999999999998753
No 202
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.27 E-value=6.1e-05 Score=71.70 Aligned_cols=174 Identities=20% Similarity=0.219 Sum_probs=117.4
Q ss_pred CHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCcc
Q 010640 184 DLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVN 262 (505)
Q Consensus 184 ~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad 262 (505)
+..+.++.+.+.+...+-+||= |-..|--.-.++++.+.. ..+..+.+|..+. ..+.++.++++|++
T Consensus 32 ~P~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i~~--------~~~~~vQvGGGIR----s~~~v~~ll~~G~~ 99 (241)
T COG0106 32 DPLEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEILE--------ATDVPVQVGGGIR----SLEDVEALLDAGVA 99 (241)
T ss_pred CHHHHHHHHHHcCCcEEEEeeccccccCCcccHHHHHHHHH--------hCCCCEEeeCCcC----CHHHHHHHHHCCCC
Confidence 3455566677789999999985 665565555566555432 1234567777775 56889999999999
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhCCCceEEEc------cc-----------CCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 263 VVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG------NV-----------VTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 263 ~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g------~V-----------~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
.+.+.+.. ....++++++.+.|+ -.|+++ .+ .-.+.++++.+.|+..+..-
T Consensus 100 rViiGt~a---v~~p~~v~~~~~~~g-~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~T-------- 167 (241)
T COG0106 100 RVIIGTAA---VKNPDLVKELCEEYG-DRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYT-------- 167 (241)
T ss_pred EEEEecce---ecCHHHHHHHHHHcC-CcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeEEEE--------
Confidence 99885532 123466777777775 333332 11 12456788888999888542
Q ss_pred ccccccc-CcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHh-CCCEEEeccccc
Q 010640 326 TQEVCAV-GRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVL-GASTVMMGSFLA 384 (505)
Q Consensus 326 ~~~~~g~-g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~l-GA~~V~~G~~f~ 384 (505)
.-...|. ..|....+.++++ ..++|+|+||||.+-.|+.++..+ |..+|.+|++|.
T Consensus 168 dI~~DGtl~G~n~~l~~~l~~---~~~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy 225 (241)
T COG0106 168 DISRDGTLSGPNVDLVKELAE---AVDIPVIASGGVSSLDDIKALKELSGVEGVIVGRALY 225 (241)
T ss_pred ecccccccCCCCHHHHHHHHH---HhCcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHh
Confidence 1111111 1255666655544 457999999999999999999999 999999999883
No 203
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.26 E-value=4.1e-07 Score=95.36 Aligned_cols=164 Identities=15% Similarity=0.156 Sum_probs=119.7
Q ss_pred eeecCcccccceEEEccch-----hhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhhhccCCccccCCCeeEeCCCC
Q 010640 47 TRLTRNIDLSLPCVASPMD-----TVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDG 121 (505)
Q Consensus 47 ~~lt~~~~l~~Pli~a~m~-----~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v~~~~~~~~~~p~~~~v~~~~ 121 (505)
-|+| +..+..|+|..-|- -.+.+.+.-...+..|+++++.+..+.... ....++|..+. ++++.-.
T Consensus 529 ~E~T-n~~~~lPiMlvLliaK~VGD~FNegiYd~~i~LkgvP~Le~~pe~~mr~------L~a~ev~~~pv--i~l~~~e 599 (762)
T KOG0474|consen 529 LELT-NNLLLLPIMLVLLIAKTVGDSFNEGIYDIIIQLKGVPFLEWEPEPYMRN------LTAGEVMSKPV--ICLNRVE 599 (762)
T ss_pred HHhh-hhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhccCCccccCCCchHhhh------hhHhhhccCCe--EEEechh
Confidence 4666 67778888776652 234455555566677888887665432221 22334555555 7899999
Q ss_pred CHHHHHHHhcC-Ce--EEEEeCCC--CCCeEEEEEeccccc-------cc-c----------------------------
Q 010640 122 CINDANDFDGS-NY--VFVTESGT--RRSRILGYVTKSDWE-------NL-S---------------------------- 160 (505)
Q Consensus 122 tv~~a~~~~~~-~~--~pVvd~~~--~~g~lvGivt~~Dl~-------~~-~---------------------------- 160 (505)
.+..+.++++. .| |||+|+-. +.+++.|+|-++.+. +. .
T Consensus 600 kV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv 679 (762)
T KOG0474|consen 600 KVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRKFTFRDFAKREPSIEDV 679 (762)
T ss_pred hHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhcCCHHHhhhcCCchhhh
Confidence 99999999999 76 99999621 125788888766652 00 0
Q ss_pred -------ccccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 161 -------DNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 161 -------~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
+....+..+|++ .+.++++++++..+..+|++-+++++.||++ ++++|++||+|+....
T Consensus 680 ~lt~~e~~~yvDl~p~~n~--sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~~ 746 (762)
T KOG0474|consen 680 HLTSEEMEMYVDLHPFMNP--SPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARYR 746 (762)
T ss_pred hcchHhHhhccccccccCC--CCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhHH
Confidence 012356678888 9999999999999999999999999999999 9999999999998654
No 204
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.24 E-value=3.6e-05 Score=71.87 Aligned_cols=133 Identities=18% Similarity=0.217 Sum_probs=89.2
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCC-----
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGS----- 320 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~----- 320 (505)
.++..+.++.+++.|++++.+...... ..+.++.+++..+.+.+..+.+.+.+.++.+.++|+|++..+.-+
T Consensus 23 ~~~~~~~~~~~~~~Gv~~vqlr~k~~~---~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~~~~~~~~ 99 (187)
T PRK07455 23 LELGLQMAEAVAAGGMRLIEITWNSDQ---PAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFTPHVDPELIE 99 (187)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCC---HHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEECCCCCHHHHH
Confidence 455778899999999999999654332 345666666666556677788888899999999999999654210
Q ss_pred -----------cceeec-cc-----ccccC----cChHH--HHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHHHhCCCE
Q 010640 321 -----------GSICTT-QE-----VCAVG----RGQAT--AVYKVSSIAAQS-GVPVIADGGISNSGHIVKALVLGAST 376 (505)
Q Consensus 321 -----------g~~~~~-~~-----~~g~g----~p~~~--~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal~lGA~~ 376 (505)
| +.+ .+ ..|.. .|+-. -+..+...+... ++|+++.||| +..++...+++||++
T Consensus 100 ~~~~~~~~~i~G--~~t~~e~~~A~~~Gadyv~~Fpt~~~~G~~~l~~~~~~~~~ipvvaiGGI-~~~n~~~~l~aGa~~ 176 (187)
T PRK07455 100 AAVAQDIPIIPG--ALTPTEIVTAWQAGASCVKVFPVQAVGGADYIKSLQGPLGHIPLIPTGGV-TLENAQAFIQAGAIA 176 (187)
T ss_pred HHHHcCCCEEcC--cCCHHHHHHHHHCCCCEEEECcCCcccCHHHHHHHHhhCCCCcEEEeCCC-CHHHHHHHHHCCCeE
Confidence 1 111 00 00000 12210 011222223333 4999999999 789999999999999
Q ss_pred EEeccccc
Q 010640 377 VMMGSFLA 384 (505)
Q Consensus 377 V~~G~~f~ 384 (505)
|.+|+.+.
T Consensus 177 vav~s~i~ 184 (187)
T PRK07455 177 VGLSGQLF 184 (187)
T ss_pred EEEehhcc
Confidence 99999874
No 205
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.24 E-value=2.5e-05 Score=75.65 Aligned_cols=133 Identities=20% Similarity=0.240 Sum_probs=92.1
Q ss_pred ccHHHHHHHHHHcCccEEEE-eC--CCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEccCCc-
Q 010640 247 ESDKERLEHLVKAGVNVVVL-DS--SQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVGMGSG- 321 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i-~~--~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~~g~g- 321 (505)
.+..+.++.+.+.|++.+++ |. ..++ ....+.++.+.+.. .+|+.+ |++.+.++++.+..+|++.++++...-
T Consensus 35 ~dp~~~a~~~~~~g~~~l~i~DLd~~~~~-~~n~~~i~~i~~~~-~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~ 112 (233)
T cd04723 35 SDPLDVARAYKELGFRGLYIADLDAIMGR-GDNDEAIRELAAAW-PLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLP 112 (233)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeCccccCC-CccHHHHHHHHHhC-CCCEEEecCcCCHHHHHHHHHcCCCeEEEcceecc
Confidence 35778999999999999866 33 2233 23467788887765 578866 688999999999999999988763211
Q ss_pred --------------ceeecccc-cc------cCc-----------------------------ChHHHHHHHHHHHhhcC
Q 010640 322 --------------SICTTQEV-CA------VGR-----------------------------GQATAVYKVSSIAAQSG 351 (505)
Q Consensus 322 --------------~~~~~~~~-~g------~g~-----------------------------p~~~~l~~v~~~~~~~~ 351 (505)
.+...-.. .+ .+. +....+ .+.++..+
T Consensus 113 ~~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~di~~~G~~~g~~~~~~---~~i~~~~~ 189 (233)
T cd04723 113 SDDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKWPEELIVLDIDRVGSGQGPDLELL---ERLAARAD 189 (233)
T ss_pred chHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHhCCeEEEEEcCccccCCCcCHHHH---HHHHHhcC
Confidence 10000000 00 001 122222 23333457
Q ss_pred CcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 352 VPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 352 ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+|++++|||++..|+.+++.+||++|.+|++|.
T Consensus 190 ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~ 222 (233)
T cd04723 190 IPVIAAGGVRSVEDLELLKKLGASGALVASALH 222 (233)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHH
Confidence 999999999999999999999999999999883
No 206
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.22 E-value=1.3e-05 Score=87.53 Aligned_cols=191 Identities=20% Similarity=0.236 Sum_probs=121.4
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCC---C---CC------
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNL---G---KG------ 229 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~---~---~~------ 229 (505)
..++.++|++ +++++++++++.++++.|.+++++.+||+|+ |+++|+||..|+.+....... . .+
T Consensus 67 ~~~V~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~ 144 (546)
T PRK14869 67 KPQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPEILSKSPTSLENII 144 (546)
T ss_pred CCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHH
Confidence 3578999998 9999999999999999999999999999998 999999999999886443210 0 00
Q ss_pred -------------ccCCCCcceEEEeec-------------CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHH
Q 010640 230 -------------TVGPDGKWMVGAAIG-------------TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYA 283 (505)
Q Consensus 230 -------------~~d~~~~l~v~a~i~-------------~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l 283 (505)
.....+++.+++... ...+..+.+..+++.|+.++.+......+..+++. .
T Consensus 145 ~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~l---a 221 (546)
T PRK14869 145 RTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLEL---A 221 (546)
T ss_pred HhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHH---H
Confidence 111244555555421 11335566668899999999997665554443333 3
Q ss_pred HHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhh---cCCcEEec-C-
Q 010640 284 KKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQ---SGVPVIAD-G- 358 (505)
Q Consensus 284 ~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~---~~ipvIa~-G- 358 (505)
++. ++|++...-.+.+.++.+.+.-. |. .+-.++...- .+.-..+.++.+.... ..+||+-. |
T Consensus 222 ~~~--~i~ii~t~~dt~~t~~~l~~~~~----V~----~iM~~~~~~~--~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~ 289 (546)
T PRK14869 222 KEN--GVTVISTPYDTFTTARLINQSIP----VS----YIMTTEDLVT--FSKDDYLEDVKEVMLKSRYRSYPVVDEDGK 289 (546)
T ss_pred HhC--CCeEEEecccHHHHHHHhhcCCC----HH----HhccCCCcEE--ECCCCcHHHHHHHHHhcCCCceEEEcCCCC
Confidence 344 79999877778888877655311 11 0000000000 0111122333333322 24788874 5
Q ss_pred --CCCCHHHHHHHH
Q 010640 359 --GISNSGHIVKAL 370 (505)
Q Consensus 359 --GI~~~~di~kal 370 (505)
|+.+..|+.+..
T Consensus 290 lvGiit~~dl~~~~ 303 (546)
T PRK14869 290 VVGVISRYHLLSPV 303 (546)
T ss_pred EEEEEEHHHhhccc
Confidence 789999998854
No 207
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.20 E-value=1.9e-06 Score=85.69 Aligned_cols=119 Identities=14% Similarity=0.075 Sum_probs=96.2
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc-cc-cccccccccccCCCce
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL-SD-NKVKIFDYMRDCSSNV 177 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~-~~-~~~~v~~im~~~~~~~ 177 (505)
.+.|+|+..-....++.+++.+++++.+.. .| +|+..++ -+.++|++..+|+... .. .+..-.++++-..++.
T Consensus 201 tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~--~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a~epy 278 (423)
T COG4536 201 TVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDD--LDNIIGVLHVRDLLRLLNEKNEFTKEDILRAADEPY 278 (423)
T ss_pred eeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCC--hhHhhhhhhHHHHHHHhhccCcccHhHHHHHhcCCe
Confidence 455788776665789999999999998877 66 9998653 5669999999998632 22 2234455565455899
Q ss_pred EecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcC
Q 010640 178 SVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGY 223 (505)
Q Consensus 178 ~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~ 223 (505)
.+++++++.+-+..|++++.+.-.|||| |.+.|+||.+||++.+-.
T Consensus 279 FVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVG 325 (423)
T COG4536 279 FVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVG 325 (423)
T ss_pred ecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhc
Confidence 9999999999999999999999999999 999999999999998653
No 208
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.19 E-value=5.1e-06 Score=78.73 Aligned_cols=108 Identities=16% Similarity=0.207 Sum_probs=79.2
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEE
Q 010640 162 NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGA 241 (505)
Q Consensus 162 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a 241 (505)
+..++.++|++ +++++.+++++.++.++|.+++++..||+|+++++|++|.+|+.++........-..+.-.+-.+
T Consensus 170 Pk~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~~aia~g~~~~kV~~~M~k~vi-- 245 (294)
T COG2524 170 PKEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAIANGNLDAKVSDYMRKNVI-- 245 (294)
T ss_pred CcchhhhhccC--CceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHHHHHHcCCccccHHHHhccCCc--
Confidence 46789999999 99999999999999999999999999999999999999999999998754321001111111111
Q ss_pred eecCCccHHHHHHHHHHcCccEEEEeCCCCCc
Q 010640 242 AIGTRESDKERLEHLVKAGVNVVVLDSSQGNS 273 (505)
Q Consensus 242 ~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~ 273 (505)
.+...++..+.++.+...++--+.+..+.|.+
T Consensus 246 tI~eDe~i~dAir~M~~~nVGRLlV~ds~gkp 277 (294)
T COG2524 246 TINEDEDIYDAIRLMNKNNVGRLLVTDSNGKP 277 (294)
T ss_pred eEcCchhHHHHHHHHHhcCcceEEEEccCCcE
Confidence 22334456677777777788777665555543
No 209
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.19 E-value=6e-06 Score=84.97 Aligned_cols=102 Identities=16% Similarity=0.171 Sum_probs=86.0
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEV 191 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~ 191 (505)
....++.+..++++.|.. +. ..|+|+ ++++.|+++.+++.........+.+.|.+ ...++++++++.+++..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 327 (363)
T TIGR01186 253 ITKTADKGPRSALQLMRDERVDSLYVVDR---QNKLVGVVDVESIKQARKKAQGLQDVLID--DIYTVDAGTLLRETVRK 327 (363)
T ss_pred eeecCCCCHHHHHHHHHhcCCceEEEEcC---CCCEEEEEeHHHHHHHhhcCCchhhhhcc--CCceECCCCcHHHHHHH
Confidence 345667789999999987 55 788887 89999999999986322233457788877 88899999999999999
Q ss_pred HHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 192 LEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 192 l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
|.+++.. +||+|+ |+++|+||+.+++....
T Consensus 328 ~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 328 VLKAGIK-VPVVDEDQRLVGIVTRGSLVDALY 358 (363)
T ss_pred HHhCCCC-EEEECCCCcEEEEEEHHHHHHHHH
Confidence 9999999 999998 99999999999999864
No 210
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.18 E-value=2.7e-05 Score=73.61 Aligned_cols=117 Identities=21% Similarity=0.221 Sum_probs=77.9
Q ss_pred HHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeeccccccc
Q 010640 253 LEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAV 332 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~ 332 (505)
.+.+.+.+++.+++.. ... .++.+++.+++..|.+ ++.+.+.+..+.++|+|++..+. +..+....+.
T Consensus 66 ~~la~~~~~~gvHl~~--~~~-----~~~~~r~~~~~~~ig~-s~~s~e~a~~a~~~Gadyi~~g~----v~~t~~k~~~ 133 (201)
T PRK07695 66 VDIALLLNIHRVQLGY--RSF-----SVRSVREKFPYLHVGY-SVHSLEEAIQAEKNGADYVVYGH----VFPTDCKKGV 133 (201)
T ss_pred HHHHHHcCCCEEEeCc--ccC-----CHHHHHHhCCCCEEEE-eCCCHHHHHHHHHcCCCEEEECC----CCCCCCCCCC
Confidence 4456667788776632 211 1334556566666666 68899999999999999997652 1111111111
Q ss_pred CcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 333 GRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 333 g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
....+..+.++ +...++||++.||| ++.++..++.+||++|.+|+.|..
T Consensus 134 ~~~g~~~l~~~---~~~~~ipvia~GGI-~~~~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 134 PARGLEELSDI---ARALSIPVIAIGGI-TPENTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred CCCCHHHHHHH---HHhCCCCEEEEcCC-CHHHHHHHHHcCCCEEEEEHHHhc
Confidence 11223444443 33457999999999 999999999999999999999864
No 211
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.15 E-value=6.7e-06 Score=85.66 Aligned_cols=100 Identities=13% Similarity=0.146 Sum_probs=84.7
Q ss_pred eCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHHHH
Q 010640 117 KAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLE 193 (505)
Q Consensus 117 v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~ 193 (505)
..++.+..++++.|.. +. ++|+|+ +++++|+|+.+++.........+.+.+.+ ...++.+++++.+++..+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 364 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIER---GNKFVGAVSIDSLKTALTQQQGLDAALID--APLAVDAQTPLSELLSHVG 364 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcC---CCcEEEEEeHHHHHhhhhcCCchhhhhcc--CCceeCCCCCHHHHHHHHH
Confidence 3466788999999988 66 889998 89999999999986432334467778877 7889999999999999999
Q ss_pred HCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 194 KNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 194 ~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
+.... +||||+ |+++|+||+.++++.+.
T Consensus 365 ~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~ 393 (400)
T PRK10070 365 QAPCA-VPVVDEDQQYVGIISKGMLLRALD 393 (400)
T ss_pred hCCCc-EEEECCCCcEEEEEEHHHHHHHHH
Confidence 97776 999998 99999999999999874
No 212
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=98.13 E-value=4.9e-05 Score=78.96 Aligned_cols=137 Identities=22% Similarity=0.200 Sum_probs=88.9
Q ss_pred cHHHHHHHHHHcCccEEEEeCCC-CC------------------------chhHHHHHHHHHHhCC-CceEEEcc-----
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQ-GN------------------------SSFQIEMIKYAKKTYP-ELDVIGGN----- 296 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~-g~------------------------~~~~~~~i~~l~~~~~-~~~Vi~g~----- 296 (505)
++.+.++.+.++|.|.|.|+.++ |+ ..-..+.++.+|+..+ +.+|.++-
T Consensus 151 ~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~ 230 (382)
T cd02931 151 KFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSY 230 (382)
T ss_pred HHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhh
Confidence 36666778888999999998765 43 1345688888888873 45665531
Q ss_pred -----------------cCCHH----HHHHHHHcCCCEEEEccCCcc-eeecccccccCcChHHHHHHHHHHHhhcCCcE
Q 010640 297 -----------------VVTMY----QAQNLIEAGVDGLRVGMGSGS-ICTTQEVCAVGRGQATAVYKVSSIAAQSGVPV 354 (505)
Q Consensus 297 -----------------V~t~e----~a~~l~~aGad~I~v~~g~g~-~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipv 354 (505)
..+.+ .++.+.++|+|++.++.|.-. ..+..... ..+...-+..+....+..++||
T Consensus 231 ~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~--~~~~~~~~~~~~~ik~~~~~pv 308 (382)
T cd02931 231 IKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPM--YQKKGMYLPYCKALKEVVDVPV 308 (382)
T ss_pred ccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCc--cCCcchhHHHHHHHHHHCCCCE
Confidence 01333 456777799999999743211 00000000 0011111122333344467999
Q ss_pred EecCCCCCHHHHHHHHHhC-CCEEEecccccCC
Q 010640 355 IADGGISNSGHIVKALVLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 355 Ia~GGI~~~~di~kal~lG-A~~V~~G~~f~~~ 386 (505)
|+.|||.++.++.++++-| ||+|++|++|+.-
T Consensus 309 i~~G~i~~~~~~~~~l~~g~~D~V~~gR~~lad 341 (382)
T cd02931 309 IMAGRMEDPELASEAINEGIADMISLGRPLLAD 341 (382)
T ss_pred EEeCCCCCHHHHHHHHHcCCCCeeeechHhHhC
Confidence 9999999999999999987 9999999999753
No 213
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=98.13 E-value=4.3e-05 Score=71.99 Aligned_cols=127 Identities=19% Similarity=0.185 Sum_probs=74.0
Q ss_pred cHHHHHHHHHHc-CccEEEEeCC--C----CCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCC
Q 010640 248 SDKERLEHLVKA-GVNVVVLDSS--Q----GNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGS 320 (505)
Q Consensus 248 ~~~e~~~~liea-Gad~I~i~~~--~----g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~ 320 (505)
+....++...|. +-++|-+..- . .+....++..+.+.+. +..|+.=.-.++-.+++|.++||.++.--..
T Consensus 77 EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~e--GF~VlPY~~~D~v~akrL~d~GcaavMPlgs- 153 (247)
T PF05690_consen 77 EAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKE--GFVVLPYCTDDPVLAKRLEDAGCAAVMPLGS- 153 (247)
T ss_dssp HHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHT--T-EEEEEE-S-HHHHHHHHHTT-SEBEEBSS-
T ss_pred HHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHC--CCEEeecCCCCHHHHHHHHHCCCCEEEeccc-
Confidence 344455555555 6777755431 1 1222334444444443 4444443345788999999999999976311
Q ss_pred cceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 321 GSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 321 g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
..-.|.|+-+...+..+.+ ..++|||.|+||.++.|++.|+.+|||+|.+-|+++.+
T Consensus 154 ------PIGSg~Gi~n~~~l~~i~~---~~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A 210 (247)
T PF05690_consen 154 ------PIGSGRGIQNPYNLRIIIE---RADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKA 210 (247)
T ss_dssp ------STTT---SSTHHHHHHHHH---HGSSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTS
T ss_pred ------ccccCcCCCCHHHHHHHHH---hcCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhcc
Confidence 1123345555566655554 35799999999999999999999999999999998654
No 214
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=98.12 E-value=2.6e-05 Score=79.77 Aligned_cols=134 Identities=24% Similarity=0.312 Sum_probs=89.2
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC-----------c-------------hhHHHHHHHHHHhC-CCceEEEc-------
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN-----------S-------------SFQIEMIKYAKKTY-PELDVIGG------- 295 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~-----------~-------------~~~~~~i~~l~~~~-~~~~Vi~g------- 295 (505)
++.+.++.+.++|.|.|.++..+|+ . ....+.++.+|+.+ ++.+|.++
T Consensus 155 ~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~ 234 (336)
T cd02932 155 AFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWV 234 (336)
T ss_pred HHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccC
Confidence 3566677888899999999875532 1 22478888899887 36777764
Q ss_pred -ccCCHH----HHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHH
Q 010640 296 -NVVTMY----QAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKAL 370 (505)
Q Consensus 296 -~V~t~e----~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal 370 (505)
.-.+.+ -++.+.+.|+|+|.++.|+-. ...... .+...-+....+..+..++||++.|||.++.++.+++
T Consensus 235 ~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~---~~~~~~--~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l 309 (336)
T cd02932 235 EGGWDLEDSVELAKALKELGVDLIDVSSGGNS---PAQKIP--VGPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAIL 309 (336)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC---cccccC--CCccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHH
Confidence 112344 345667789999998743211 110000 0001111222333444679999999999999999999
Q ss_pred HhC-CCEEEecccccCC
Q 010640 371 VLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 371 ~lG-A~~V~~G~~f~~~ 386 (505)
..| ||+|++|++++.-
T Consensus 310 ~~g~aD~V~~gR~~i~d 326 (336)
T cd02932 310 ESGRADLVALGRELLRN 326 (336)
T ss_pred HcCCCCeehhhHHHHhC
Confidence 998 9999999998753
No 215
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=98.11 E-value=0.00011 Score=69.66 Aligned_cols=122 Identities=25% Similarity=0.388 Sum_probs=84.9
Q ss_pred cceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEE
Q 010640 236 KWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 236 ~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~ 315 (505)
.+.+|+..-. ..+.++.++++|+++++. .+- ..+.++..+.. +.+++.| +.|.+++..+.+.|+|++.
T Consensus 62 ~~~iGaGTV~---~~~~~~~a~~aGA~fivs--p~~----~~~v~~~~~~~--~~~~~~G-~~t~~E~~~A~~~Gad~vk 129 (206)
T PRK09140 62 RALIGAGTVL---SPEQVDRLADAGGRLIVT--PNT----DPEVIRRAVAL--GMVVMPG-VATPTEAFAALRAGAQALK 129 (206)
T ss_pred CcEEeEEecC---CHHHHHHHHHcCCCEEEC--CCC----CHHHHHHHHHC--CCcEEcc-cCCHHHHHHHHHcCCCEEE
Confidence 3566665422 447788899999999975 211 12344444433 6787776 8899999999999999997
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+= .+ ...| ++.+..+..... .++|+++.||| +..++...+++||++|.+|+.+.
T Consensus 130 ~F-------pa---~~~G---~~~l~~l~~~~~-~~ipvvaiGGI-~~~n~~~~~~aGa~~vav~s~l~ 183 (206)
T PRK09140 130 LF-------PA---SQLG---PAGIKALRAVLP-PDVPVFAVGGV-TPENLAPYLAAGAAGFGLGSALY 183 (206)
T ss_pred EC-------CC---CCCC---HHHHHHHHhhcC-CCCeEEEECCC-CHHHHHHHHHCCCeEEEEehHhc
Confidence 51 01 1122 333433333321 14999999999 89999999999999999999874
No 216
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.10 E-value=0.00013 Score=70.43 Aligned_cols=130 Identities=15% Similarity=0.113 Sum_probs=87.7
Q ss_pred cHHHHHHHHHHcCccEEEE-eC--CCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEcc-----
Q 010640 248 SDKERLEHLVKAGVNVVVL-DS--SQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVGM----- 318 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i-~~--~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~~----- 318 (505)
+..+.++.+.+.|++.+++ |. ..+... ..+.++++.+.. ..|+.+ |++.+.++++.+.+.|++.++++.
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a~~~~~-n~~~i~~i~~~~-~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~ 108 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAAEGVGN-NEMYIKEISKIG-FDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTN 108 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcCCCcc-hHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCC
Confidence 4778888898999998866 33 334333 357888887742 247766 688999999999999999998864
Q ss_pred -----------CCcceeec-------cc-ccccCc---------------------------------ChHHHHHHHHHH
Q 010640 319 -----------GSGSICTT-------QE-VCAVGR---------------------------------GQATAVYKVSSI 346 (505)
Q Consensus 319 -----------g~g~~~~~-------~~-~~g~g~---------------------------------p~~~~l~~v~~~ 346 (505)
|+..+... +. ..||.. |.++.+..+.
T Consensus 109 p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G~d~el~~~~~-- 186 (232)
T PRK13586 109 FNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELELLGIIFTYISNEGTTKGIDYNVKDYAR-- 186 (232)
T ss_pred HHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcCCCEEEEecccccccCcCcCHHHHHHHH--
Confidence 11111100 00 112211 2222222221
Q ss_pred HhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 347 AAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 347 ~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
. ...|+|++|||++..|+.++..+|+++|.+|+++
T Consensus 187 -~-~~~~viasGGv~s~~Dl~~l~~~G~~gvivg~Al 221 (232)
T PRK13586 187 -L-IRGLKEYAGGVSSDADLEYLKNVGFDYIIVGMAF 221 (232)
T ss_pred -h-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEehhh
Confidence 1 2357999999999999999999999999999987
No 217
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.09 E-value=7.9e-06 Score=78.77 Aligned_cols=108 Identities=13% Similarity=0.203 Sum_probs=76.3
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCcc---CCCCcc
Q 010640 162 NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTV---GPDGKW 237 (505)
Q Consensus 162 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~---d~~~~l 237 (505)
.+..+.++|++ ++++++.++++.++.++|++++++.|||+|+ .+++||||+.|+++...... ++..+ ...-+.
T Consensus 243 ~~LtcadIMSr--dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p-~qrlr~~~~~~vk~ 319 (382)
T COG3448 243 GELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSP-FQRLRFLRPPTVKG 319 (382)
T ss_pred ccccHHHhcCc--cceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcch-HHHhhccCCCcccc
Confidence 35689999999 9999999999999999999999999999999 89999999999998543211 11111 111111
Q ss_pred eEE---EeecCCccHHHHHHHHHHcCccEEEEeCCCCC
Q 010640 238 MVG---AAIGTRESDKERLEHLVKAGVNVVVLDSSQGN 272 (505)
Q Consensus 238 ~v~---a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~ 272 (505)
++. .-+.......+.+..+.++|..++.+-...|+
T Consensus 320 imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~ 357 (382)
T COG3448 320 IMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGK 357 (382)
T ss_pred cccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCc
Confidence 111 11122334667777888888877766555543
No 218
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.08 E-value=0.00013 Score=70.37 Aligned_cols=133 Identities=20% Similarity=0.234 Sum_probs=86.2
Q ss_pred cHHHHHHHHHHcCccEEEE-eCC---CCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEccCCc-
Q 010640 248 SDKERLEHLVKAGVNVVVL-DSS---QGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVGMGSG- 321 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i-~~~---~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~~g~g- 321 (505)
+..+.++.+.+. ++.+.+ +.. .|.. ...+.++.+.+.. ++|+++ |++.+.++++.+.++|++.+.++...-
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDldga~~g~~-~n~~~i~~i~~~~-~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~ 107 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLDGAFEGKP-KNLDVVKNIIRET-GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFD 107 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECcchhcCCc-chHHHHHHHHhhC-CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcC
Confidence 466777777776 775544 443 2322 3467788887764 788876 689999999999999999998863111
Q ss_pred ------------ceeeccc-------ccccC----cChHHHHHHHHH---------------------HHhh-cCCcEEe
Q 010640 322 ------------SICTTQE-------VCAVG----RGQATAVYKVSS---------------------IAAQ-SGVPVIA 356 (505)
Q Consensus 322 ------------~~~~~~~-------~~g~g----~p~~~~l~~v~~---------------------~~~~-~~ipvIa 356 (505)
.+...-. ..||- ....+.+..+.+ ..+. .++|||+
T Consensus 108 ~~~l~~~~~~~g~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~~~~ii~t~i~~dGt~~G~d~l~~~~~~~pvia 187 (228)
T PRK04128 108 LEFLEKVTSEFEGITVSLDVKGGRIAVKGWLEESSIKVEDAYEMLKNYVNRFIYTSIERDGTLTGIEEIERFWGDEEFIY 187 (228)
T ss_pred HHHHHHHHHHcCCEEEEEEccCCeEecCCCeEcCCCCHHHHHHHHHHHhCEEEEEeccchhcccCHHHHHHhcCCCCEEE
Confidence 1111000 12221 111121111111 1111 3689999
Q ss_pred cCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 357 DGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 357 ~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
+|||++..|+.++..+|+++|.+|++|
T Consensus 188 sGGv~~~~Dl~~l~~~g~~gvivg~al 214 (228)
T PRK04128 188 AGGVSSAEDVKKLAEIGFSGVIIGKAL 214 (228)
T ss_pred ECCCCCHHHHHHHHHCCCCEEEEEhhh
Confidence 999999999999999999999999998
No 219
>PLN02334 ribulose-phosphate 3-epimerase
Probab=98.05 E-value=0.0011 Score=64.07 Aligned_cols=181 Identities=16% Similarity=0.148 Sum_probs=101.9
Q ss_pred CHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeec-hhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCc
Q 010640 184 DLGQIDEVLEKNDVDFVVLEKD-GERLDVVTRE-DVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGV 261 (505)
Q Consensus 184 ~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~-dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGa 261 (505)
.+.+.++.+.+.+++.+=+=.. +.++.-++.. ++.+.... . .+..+.+-+- ..+..++++.+.+.|+
T Consensus 21 ~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~---------~-~~~~~~vhlm-v~~p~d~~~~~~~~ga 89 (229)
T PLN02334 21 NLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRK---------H-TDAPLDCHLM-VTNPEDYVPDFAKAGA 89 (229)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHh---------c-CCCcEEEEec-cCCHHHHHHHHHHcCC
Confidence 4667788888888877665322 4444333331 22222211 0 1112222221 1124567788889999
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEc-cc-CCHHHHHHHHHcC-CCEEEEccCCcceeecccccccCcChHH
Q 010640 262 NVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG-NV-VTMYQAQNLIEAG-VDGLRVGMGSGSICTTQEVCAVGRGQAT 338 (505)
Q Consensus 262 d~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g-~V-~t~e~a~~l~~aG-ad~I~v~~g~g~~~~~~~~~g~g~p~~~ 338 (505)
|.+.+|..+.........++.+++. +..+.+. +- ...+..+.+...| +|+|.++ .+..+.....+....+.
T Consensus 90 d~v~vH~~q~~~d~~~~~~~~i~~~--g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~----~v~pg~~~~~~~~~~~~ 163 (229)
T PLN02334 90 SIFTFHIEQASTIHLHRLIQQIKSA--GMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVM----SVEPGFGGQSFIPSMMD 163 (229)
T ss_pred CEEEEeeccccchhHHHHHHHHHHC--CCeEEEEECCCCCHHHHHHHHhccCCCEEEEE----EEecCCCccccCHHHHH
Confidence 9998877631122345666666665 4444331 21 2345555555553 9998663 12222111112222333
Q ss_pred HHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 339 AVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 339 ~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
-+.++++.. .++||.++||| +...+.....+||+++.+|+.+.
T Consensus 164 ~i~~~~~~~--~~~~I~a~GGI-~~e~i~~l~~aGad~vvvgsai~ 206 (229)
T PLN02334 164 KVRALRKKY--PELDIEVDGGV-GPSTIDKAAEAGANVIVAGSAVF 206 (229)
T ss_pred HHHHHHHhC--CCCcEEEeCCC-CHHHHHHHHHcCCCEEEEChHHh
Confidence 444443332 24799999999 79999999999999999999874
No 220
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.05 E-value=9.2e-05 Score=75.79 Aligned_cols=139 Identities=17% Similarity=0.137 Sum_probs=89.1
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCC-------------------C-----chhHHHHHHHHHHhCC-CceEEEcc------
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQG-------------------N-----SSFQIEMIKYAKKTYP-ELDVIGGN------ 296 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g-------------------~-----~~~~~~~i~~l~~~~~-~~~Vi~g~------ 296 (505)
.+.+.++.+.++|.|.|.|+..+| . .....+.++.+|+.+. +.+|.+.-
T Consensus 150 ~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~ 229 (338)
T cd04733 150 RFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQ 229 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcC
Confidence 355667788889999999986542 1 1345788888998873 56776631
Q ss_pred --cCCHH----HHHHHHHcCCCEEEEccCCcc-eeec-ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHH
Q 010640 297 --VVTMY----QAQNLIEAGVDGLRVGMGSGS-ICTT-QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVK 368 (505)
Q Consensus 297 --V~t~e----~a~~l~~aGad~I~v~~g~g~-~~~~-~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~k 368 (505)
-.+.+ -++.|.++|+|+|.|+.+.-. .... ........+....+..+.+..+..++||+++|+|.+..++.+
T Consensus 230 ~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~ 309 (338)
T cd04733 230 RGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQ 309 (338)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHHHHH
Confidence 12444 356778899999998643100 0000 000000001111112223334446899999999999999999
Q ss_pred HHHhC-CCEEEecccccCC
Q 010640 369 ALVLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 369 al~lG-A~~V~~G~~f~~~ 386 (505)
++..| ||+|++|+.|+.-
T Consensus 310 ~l~~g~aD~V~lgR~~iad 328 (338)
T cd04733 310 ALASGAVDGIGLARPLALE 328 (338)
T ss_pred HHHcCCCCeeeeChHhhhC
Confidence 99987 9999999998753
No 221
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=98.04 E-value=6.9e-05 Score=71.22 Aligned_cols=121 Identities=20% Similarity=0.239 Sum_probs=76.2
Q ss_pred HHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeeccccc
Q 010640 251 ERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVC 330 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~ 330 (505)
+.++.+.+.|++.+++.... . ....++.++.. +..+.+ .+.|.+++..+.+.|+|+|.++. ...+....
T Consensus 72 ~~~~~a~~~gad~vh~~~~~-~---~~~~~~~~~~~--~~~~g~-~~~t~~e~~~a~~~gaD~v~~~~----~~~~~~~~ 140 (212)
T PRK00043 72 DRVDLALAVGADGVHLGQDD-L---PVADARALLGP--DAIIGL-STHTLEEAAAALAAGADYVGVGP----IFPTPTKK 140 (212)
T ss_pred ChHHHHHHcCCCEEecCccc-C---CHHHHHHHcCC--CCEEEE-eCCCHHHHHHHhHcCCCEEEECC----ccCCCCCC
Confidence 34667788899998773321 1 12223323222 333433 45688899999999999997751 11111000
Q ss_pred ccC-cChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 331 AVG-RGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 331 g~g-~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
+.. ...+..+..+++..+ .+||+++||| +..++.+++.+||++|.+|+.|..
T Consensus 141 ~~~~~~g~~~~~~~~~~~~--~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~~ 193 (212)
T PRK00043 141 DAKAPQGLEGLREIRAAVG--DIPIVAIGGI-TPENAPEVLEAGADGVAVVSAITG 193 (212)
T ss_pred CCCCCCCHHHHHHHHHhcC--CCCEEEECCc-CHHHHHHHHHcCCCEEEEeHHhhc
Confidence 100 112455555544432 2999999999 799999999999999999998754
No 222
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=98.03 E-value=0.00016 Score=69.28 Aligned_cols=131 Identities=15% Similarity=0.141 Sum_probs=86.9
Q ss_pred ccHHHHHHHHHHcCccEEEE-eC--CCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHH--cCCCEEEEccCC
Q 010640 247 ESDKERLEHLVKAGVNVVVL-DS--SQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIE--AGVDGLRVGMGS 320 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i-~~--~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~--aGad~I~v~~g~ 320 (505)
.+..+.++.+.+.|++.+++ |. ..+. ....+.++++.+.. |+.+ |++.|.++++.+.. .|++.++++...
T Consensus 36 ~dP~~~a~~~~~~g~~~l~ivDLd~~~~~-~~n~~~i~~i~~~~---~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a 111 (221)
T TIGR00734 36 SSPDDAAKVIEEIGARFIYIADLDRIVGL-GDNFSLLSKLSKRV---ELIADCGVRSPEDLETLPFTLEFASRVVVATET 111 (221)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEcccccCC-cchHHHHHHHHhhC---cEEEcCccCCHHHHHHHHhhhccceEEeecChh
Confidence 35678888888999999866 33 3333 34567788787763 5655 68889999988865 368888765311
Q ss_pred --------------------cce-----------------------eeccc-ccccC-cChHHHHHHHHHHHhhcCCcEE
Q 010640 321 --------------------GSI-----------------------CTTQE-VCAVG-RGQATAVYKVSSIAAQSGVPVI 355 (505)
Q Consensus 321 --------------------g~~-----------------------~~~~~-~~g~g-~p~~~~l~~v~~~~~~~~ipvI 355 (505)
|.. ..+.. ..|-. .|.++.+..+ ++..++|+|
T Consensus 112 ~~~p~~l~~~~~vvslD~~~g~v~~~g~~~~~~~~~~~~~~~g~~ii~tdI~~dGt~~G~d~eli~~i---~~~~~~pvi 188 (221)
T TIGR00734 112 LDITELLRECYTVVSLDFKEKFLDASGLFESLEEVRDFLNSFDYGLIVLDIHSVGTMKGPNLELLTKT---LELSEHPVM 188 (221)
T ss_pred hCCHHHHHHhhhEEEEEeECCccccccccccHHHHHHHHHhcCCEEEEEECCccccCCCCCHHHHHHH---HhhCCCCEE
Confidence 100 00000 00110 1334444443 334579999
Q ss_pred ecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 356 ADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 356 a~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
++|||++..|+.++..+||++|.+|++|.
T Consensus 189 a~GGi~s~ed~~~l~~~Ga~~vivgsal~ 217 (221)
T TIGR00734 189 LGGGISGVEDLELLKEMGVSAVLVATAVH 217 (221)
T ss_pred EeCCCCCHHHHHHHHHCCCCEEEEhHHhh
Confidence 99999999999999999999999999883
No 223
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=0.00014 Score=73.64 Aligned_cols=131 Identities=22% Similarity=0.245 Sum_probs=89.6
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCC---------------CchhHHHHHHHHHHhCCCceEEEc---ccC-----CHHH
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQG---------------NSSFQIEMIKYAKKTYPELDVIGG---NVV-----TMYQ 302 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g---------------~~~~~~~~i~~l~~~~~~~~Vi~g---~V~-----t~e~ 302 (505)
++...+.++.+.+.|++.|-++..+. ++.-+.+.++.+++..+++||-+| ++. ..+-
T Consensus 78 p~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~i 157 (323)
T COG0042 78 PELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEI 157 (323)
T ss_pred HHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHH
Confidence 34456666777778999998876431 234567778888887644888775 222 3457
Q ss_pred HHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHH-hCCCEEEecc
Q 010640 303 AQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALV-LGASTVMMGS 381 (505)
Q Consensus 303 a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~-lGA~~V~~G~ 381 (505)
++.+.++|++++.| |+ -++...+.+-.....+.++++.++. +|||+-|+|.+.+|..+.|. -|+|+||+|+
T Consensus 158 a~~~~~~g~~~ltV--Hg----Rtr~~~y~~~ad~~~I~~vk~~~~~--ipvi~NGdI~s~~~a~~~l~~tg~DgVMigR 229 (323)
T COG0042 158 ARILEDAGADALTV--HG----RTRAQGYLGPADWDYIKELKEAVPS--IPVIANGDIKSLEDAKEMLEYTGADGVMIGR 229 (323)
T ss_pred HHHHHhcCCCEEEE--ec----ccHHhcCCCccCHHHHHHHHHhCCC--CeEEeCCCcCCHHHHHHHHHhhCCCEEEEcH
Confidence 88899999999977 21 1222222222334556565554432 99999999999999999998 5699999998
Q ss_pred ccc
Q 010640 382 FLA 384 (505)
Q Consensus 382 ~f~ 384 (505)
.-+
T Consensus 230 ga~ 232 (323)
T COG0042 230 GAL 232 (323)
T ss_pred HHc
Confidence 654
No 224
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=98.03 E-value=0.00013 Score=71.01 Aligned_cols=138 Identities=18% Similarity=0.239 Sum_probs=92.2
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEccc-CCHHHHHHHHHcCCCEEEEccC-----
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNV-VTMYQAQNLIEAGVDGLRVGMG----- 319 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V-~t~e~a~~l~~aGad~I~v~~g----- 319 (505)
..+..+.+....+.|++++.+-+...+..+..+.+..+++.+ ++|+..+.. .++.....+..+|||+|-+-..
T Consensus 67 ~~d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~-~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L~~~ 145 (254)
T PF00218_consen 67 DFDPAEIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRKAV-DLPVLRKDFIIDPYQIYEARAAGADAVLLIAAILSDD 145 (254)
T ss_dssp S-SHHHHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHHHS-SS-EEEES---SHHHHHHHHHTT-SEEEEEGGGSGHH
T ss_pred cCCHHHHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHHHh-CCCcccccCCCCHHHHHHHHHcCCCEeehhHHhCCHH
Confidence 345788899999999999999777666778889999999887 899999876 5888888899999999865320
Q ss_pred -------------------------------Ccc--e-eecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHH
Q 010640 320 -------------------------------SGS--I-CTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGH 365 (505)
Q Consensus 320 -------------------------------~g~--~-~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~d 365 (505)
.|. + -..|.+..+.+. +.....+....++ ++.+|+.+||.++.|
T Consensus 146 ~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd-~~~~~~l~~~ip~-~~~~iseSGI~~~~d 223 (254)
T PF00218_consen 146 QLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFEVD-LNRTEELAPLIPK-DVIVISESGIKTPED 223 (254)
T ss_dssp HHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBH-THHHHHHHCHSHT-TSEEEEESS-SSHHH
T ss_pred HHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcccC-hHHHHHHHhhCcc-ceeEEeecCCCCHHH
Confidence 000 0 111223333222 1222233333332 478999999999999
Q ss_pred HHHHHHhCCCEEEecccccCC
Q 010640 366 IVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 366 i~kal~lGA~~V~~G~~f~~~ 386 (505)
+.+...+|+++|.+|+.|+.+
T Consensus 224 ~~~l~~~G~davLVGe~lm~~ 244 (254)
T PF00218_consen 224 ARRLARAGADAVLVGEALMRS 244 (254)
T ss_dssp HHHHCTTT-SEEEESHHHHTS
T ss_pred HHHHHHCCCCEEEECHHHhCC
Confidence 999999999999999999754
No 225
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=98.02 E-value=4.3e-05 Score=77.94 Aligned_cols=131 Identities=21% Similarity=0.201 Sum_probs=86.6
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCC-------------------c-----hhHHHHHHHHHHhCCCceEEEccc-------
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGN-------------------S-----SFQIEMIKYAKKTYPELDVIGGNV------- 297 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~-------------------~-----~~~~~~i~~l~~~~~~~~Vi~g~V------- 297 (505)
+.+.++.+.++|.|.|.|+..+|+ + ....+.++.+|+.. +.||.++--
T Consensus 144 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~-~~~v~vRis~~d~~~~ 222 (337)
T PRK13523 144 FKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW-DGPLFVRISASDYHPG 222 (337)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc-CCCeEEEecccccCCC
Confidence 556677888899999999875421 1 23567888888876 556655311
Q ss_pred -CCHH----HHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHh
Q 010640 298 -VTMY----QAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVL 372 (505)
Q Consensus 298 -~t~e----~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~l 372 (505)
.+.+ -++.+.++|+|+|.++.|.-.........++ ...... +..+..++||++.|+|.++.++.++|.-
T Consensus 223 G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~---~~~~~~---~ik~~~~ipVi~~G~i~~~~~a~~~l~~ 296 (337)
T PRK13523 223 GLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGY---QVPFAE---HIREHANIATGAVGLITSGAQAEEILQN 296 (337)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccc---cHHHHH---HHHhhcCCcEEEeCCCCCHHHHHHHHHc
Confidence 1343 4467778999999997442100000001111 222222 2233457999999999999999999998
Q ss_pred C-CCEEEecccccCC
Q 010640 373 G-ASTVMMGSFLAGS 386 (505)
Q Consensus 373 G-A~~V~~G~~f~~~ 386 (505)
| ||+|++|++|+.-
T Consensus 297 g~~D~V~~gR~~iad 311 (337)
T PRK13523 297 NRADLIFIGRELLRN 311 (337)
T ss_pred CCCChHHhhHHHHhC
Confidence 8 9999999999764
No 226
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=98.00 E-value=0.00035 Score=66.21 Aligned_cols=121 Identities=25% Similarity=0.288 Sum_probs=81.6
Q ss_pred HHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEc--ccCC-HHHHHHHHHcCCCEEEEccCCcceeeccc
Q 010640 252 RLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG--NVVT-MYQAQNLIEAGVDGLRVGMGSGSICTTQE 328 (505)
Q Consensus 252 ~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g--~V~t-~e~a~~l~~aGad~I~v~~g~g~~~~~~~ 328 (505)
.++.+.++|+|++.+|...+. ....+.++.+++. ++++++. +..+ .+.++.+.+.|+|++.+.. |...
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~-~~~~~~i~~~~~~--g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~p--g~~~---- 138 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADD-ATIKGAVKAAKKH--GKEVQVDLINVKDKVKRAKELKELGADYIGVHT--GLDE---- 138 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCH-HHHHHHHHHHHHc--CCEEEEEecCCCChHHHHHHHHHcCCCEEEEcC--CcCc----
Confidence 578889999999998875432 2235666666665 7888763 3333 4788888899999986632 1110
Q ss_pred ccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 329 VCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 329 ~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
..++...+..+..+.+... ..++.++||| +...+..++.+||+.+.+|+.+..
T Consensus 139 -~~~~~~~~~~i~~l~~~~~--~~~i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~~ 191 (206)
T TIGR03128 139 -QAKGQNPFEDLQTILKLVK--EARVAVAGGI-NLDTIPDVIKLGPDIVIVGGAITK 191 (206)
T ss_pred -ccCCCCCHHHHHHHHHhcC--CCcEEEECCc-CHHHHHHHHHcCCCEEEEeehhcC
Confidence 1112223344444444333 2566679999 889999999999999999998754
No 227
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.00 E-value=0.00024 Score=67.78 Aligned_cols=123 Identities=17% Similarity=0.202 Sum_probs=86.3
Q ss_pred cceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEE
Q 010640 236 KWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 236 ~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~ 315 (505)
++.+|+..-. ..+.++.++++|+++++ +.+.. .+.++..++. ++|++. ++.|+.++..+.++|++.++
T Consensus 70 ~~~vGaGTVl---~~e~a~~a~~aGA~FiV---sP~~~---~~v~~~~~~~--~i~~iP-G~~TpsEi~~A~~~Ga~~vK 137 (222)
T PRK07114 70 GMILGVGSIV---DAATAALYIQLGANFIV---TPLFN---PDIAKVCNRR--KVPYSP-GCGSLSEIGYAEELGCEIVK 137 (222)
T ss_pred CeEEeeEeCc---CHHHHHHHHHcCCCEEE---CCCCC---HHHHHHHHHc--CCCEeC-CCCCHHHHHHHHHCCCCEEE
Confidence 4667766432 45778889999999996 33333 3455555555 788776 68999999999999999998
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCC-HHHHHHHHHhCCCEEEecccccC
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISN-SGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~-~~di~kal~lGA~~V~~G~~f~~ 385 (505)
+=- .. . .|.+.+.+| ..-. -++++++.|||.- ..++...|.+||.+|.+|+.+..
T Consensus 138 lFP-------A~-~--~G~~~ikal---~~p~--p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~ 193 (222)
T PRK07114 138 LFP-------GS-V--YGPGFVKAI---KGPM--PWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIP 193 (222)
T ss_pred ECc-------cc-c--cCHHHHHHH---hccC--CCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcC
Confidence 720 00 0 122222222 2212 2589999999985 58999999999999999998753
No 228
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=97.99 E-value=8e-05 Score=76.29 Aligned_cols=135 Identities=20% Similarity=0.190 Sum_probs=85.9
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC-------------------c-----hhHHHHHHHHHHhCC-CceEEEc--c--c-
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN-------------------S-----SFQIEMIKYAKKTYP-ELDVIGG--N--V- 297 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~-------------------~-----~~~~~~i~~l~~~~~-~~~Vi~g--~--V- 297 (505)
++.+.+..+.++|.|.|.++.++|. + ....+.++.+|+..+ +.+|.+. . .
T Consensus 142 ~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~ 221 (343)
T cd04734 142 AFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDT 221 (343)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhcc
Confidence 3556677778899999999885542 1 235678888888872 4444442 1 0
Q ss_pred ---CCH----HHHHHHHHcC-CCEEEEccCCccee----e-c-ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCH
Q 010640 298 ---VTM----YQAQNLIEAG-VDGLRVGMGSGSIC----T-T-QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNS 363 (505)
Q Consensus 298 ---~t~----e~a~~l~~aG-ad~I~v~~g~g~~~----~-~-~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~ 363 (505)
.+. +.++.+.++| +|++.++.|.-... . . ....+.+ ....... +..+..++|||+.|||.++
T Consensus 222 ~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~ik~~~~ipvi~~G~i~~~ 297 (343)
T cd04734 222 EGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPG-PFLPLAA---RIKQAVDLPVFHAGRIRDP 297 (343)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcc-hhHHHHH---HHHHHcCCCEEeeCCCCCH
Confidence 123 3457777898 89999964321100 0 0 0000000 1122222 2333457999999999999
Q ss_pred HHHHHHHHhC-CCEEEecccccCC
Q 010640 364 GHIVKALVLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 364 ~di~kal~lG-A~~V~~G~~f~~~ 386 (505)
.++.+++.-| ||+|++|+.|+.-
T Consensus 298 ~~~~~~l~~~~~D~V~~gR~~lad 321 (343)
T cd04734 298 AEAEQALAAGHADMVGMTRAHIAD 321 (343)
T ss_pred HHHHHHHHcCCCCeeeecHHhHhC
Confidence 9999999977 9999999999753
No 229
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=97.99 E-value=7.5e-05 Score=69.95 Aligned_cols=119 Identities=22% Similarity=0.283 Sum_probs=82.2
Q ss_pred ceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEE
Q 010640 237 WMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 237 l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v 316 (505)
+.+++..-. ..+.++.+++.|++.++. ... ..+.++..++. +.++++ ++.|.+++..+.++|+|++.+
T Consensus 56 ~~iGag~v~---~~~~~~~a~~~Ga~~i~~--p~~----~~~~~~~~~~~--~~~~i~-gv~t~~e~~~A~~~Gad~i~~ 123 (190)
T cd00452 56 ALIGAGTVL---TPEQADAAIAAGAQFIVS--PGL----DPEVVKAANRA--GIPLLP-GVATPTEIMQALELGADIVKL 123 (190)
T ss_pred CEEEEEeCC---CHHHHHHHHHcCCCEEEc--CCC----CHHHHHHHHHc--CCcEEC-CcCCHHHHHHHHHCCCCEEEE
Confidence 556654321 357888899999999964 222 12444444443 677777 677999999999999999965
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQS-GVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
-. . ...| ...+..+.. .. ++|+++.||| +..++...+.+||++|.+|+.+.
T Consensus 124 ~p-------~---~~~g---~~~~~~l~~---~~~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 124 FP-------A---EAVG---PAYIKALKG---PFPQVRFMPTGGV-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred cC-------C---cccC---HHHHHHHHh---hCCCCeEEEeCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence 21 0 0011 223333322 22 4899999999 99999999999999999999874
No 230
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.99 E-value=4.4e-05 Score=78.54 Aligned_cols=134 Identities=21% Similarity=0.242 Sum_probs=86.3
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC-------------------c-----hhHHHHHHHHHHhCC-----CceEEEc-cc
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN-------------------S-----SFQIEMIKYAKKTYP-----ELDVIGG-NV 297 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~-------------------~-----~~~~~~i~~l~~~~~-----~~~Vi~g-~V 297 (505)
++.+.++.+.++|.|.|.||.++|+ + ....+.++.+|+..+ +.+|.+. +.
T Consensus 145 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~ 224 (353)
T cd04735 145 AFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSP 224 (353)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECc
Confidence 3556677788899999999864421 1 235678888888763 4455442 11
Q ss_pred -------CCH----HHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHH
Q 010640 298 -------VTM----YQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHI 366 (505)
Q Consensus 298 -------~t~----e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di 366 (505)
.+. +-++.+.++|+|+|.|+.+.- +..... ...........+++... .++|||+.|||.++.++
T Consensus 225 ~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~---~~~~~~-~~~~~~~~~~~ik~~~~-~~iPVi~~Ggi~t~e~a 299 (353)
T cd04735 225 EEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDF---DRKSRR-GRDDNQTIMELVKERIA-GRLPLIAVGSINTPDDA 299 (353)
T ss_pred ccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCcc---cccccc-CCcchHHHHHHHHHHhC-CCCCEEEECCCCCHHHH
Confidence 123 345777889999999974321 111000 00011222233333322 36899999999999999
Q ss_pred HHHHHhCCCEEEecccccCC
Q 010640 367 VKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 367 ~kal~lGA~~V~~G~~f~~~ 386 (505)
.++++.|||+|++|++|+.-
T Consensus 300 e~~l~~gaD~V~~gR~liad 319 (353)
T cd04735 300 LEALETGADLVAIGRGLLVD 319 (353)
T ss_pred HHHHHcCCChHHHhHHHHhC
Confidence 99999999999999999753
No 231
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=97.97 E-value=0.00011 Score=70.07 Aligned_cols=100 Identities=19% Similarity=0.204 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcE
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPV 354 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipv 354 (505)
..++..+.+.+. +..|+.=.-.++-.|++|.++||.++.--.. ..-.|-|+.+...+..+.+ ..++||
T Consensus 125 etl~Aae~Lv~e--GF~VlPY~~~D~v~a~rLed~Gc~aVMPlgs-------PIGSg~Gl~n~~~l~~i~e---~~~vpV 192 (267)
T CHL00162 125 GTLKAAEFLVKK--GFTVLPYINADPMLAKHLEDIGCATVMPLGS-------PIGSGQGLQNLLNLQIIIE---NAKIPV 192 (267)
T ss_pred HHHHHHHHHHHC--CCEEeecCCCCHHHHHHHHHcCCeEEeeccC-------cccCCCCCCCHHHHHHHHH---cCCCcE
Confidence 334444444333 3444443445788999999999999975311 1112334555555544443 356999
Q ss_pred EecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 355 IADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 355 Ia~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
|.++||.++.|+.+|+.+|||+|.+.|.++.+
T Consensus 193 ivdAGIgt~sDa~~AmElGaDgVL~nSaIakA 224 (267)
T CHL00162 193 IIDAGIGTPSEASQAMELGASGVLLNTAVAQA 224 (267)
T ss_pred EEeCCcCCHHHHHHHHHcCCCEEeecceeecC
Confidence 99999999999999999999999999998743
No 232
>PRK04302 triosephosphate isomerase; Provisional
Probab=97.94 E-value=0.00022 Score=68.58 Aligned_cols=129 Identities=22% Similarity=0.185 Sum_probs=82.4
Q ss_pred HHHHHHHHcCccEEEEeCCCCC--chhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeeccc
Q 010640 251 ERLEHLVKAGVNVVVLDSSQGN--SSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQE 328 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~~g~--~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~ 328 (505)
..++.+.+.|++.+.+.-+... .....+.++..++. ++.+++ .+.+.+.++.+.+.|.++|.+... +.+.++..
T Consensus 76 ~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~--Gl~~I~-~v~~~~~~~~~~~~~~~~I~~~p~-~~igt~~~ 151 (223)
T PRK04302 76 ILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKL--GLESVV-CVNNPETSAAAAALGPDYVAVEPP-ELIGTGIP 151 (223)
T ss_pred hHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHC--CCeEEE-EcCCHHHHHHHhcCCCCEEEEeCc-cccccCCC
Confidence 4477888899999988543211 12233444444443 565554 667788888888899998865310 00111111
Q ss_pred ccccCcChHHHHHHHHHHHhh--cCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 329 VCAVGRGQATAVYKVSSIAAQ--SGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 329 ~~g~g~p~~~~l~~v~~~~~~--~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
.. ..+...+.+..+..++ .++||++.|||.++.++..++..|||+|.+|+.++.+
T Consensus 152 ~~---~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~ 208 (223)
T PRK04302 152 VS---KAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKA 208 (223)
T ss_pred CC---cCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCC
Confidence 00 0122333343343443 2589999999999999999999999999999999753
No 233
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.93 E-value=0.0011 Score=64.43 Aligned_cols=175 Identities=18% Similarity=0.176 Sum_probs=111.3
Q ss_pred CCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcC
Q 010640 182 NYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAG 260 (505)
Q Consensus 182 ~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaG 260 (505)
..+..+.++.+.+.+..++-|||= + |--...++++.+.. ....+.+|..+. . +.++.+++.|
T Consensus 42 ~~dP~~~A~~~~~~Ga~~lHvVDLdg---g~~~n~~~i~~i~~---------~~~~vqvGGGIR----~-e~i~~~l~~G 104 (262)
T PLN02446 42 DKSAAEFAEMYKRDGLTGGHVIMLGA---DDASLAAALEALRA---------YPGGLQVGGGVN----S-ENAMSYLDAG 104 (262)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEECCC---CCcccHHHHHHHHh---------CCCCEEEeCCcc----H-HHHHHHHHcC
Confidence 356778888999999999999985 4 44444555555432 123455666652 3 8899999999
Q ss_pred ccEEEEeCCC-CCchhHHHHHHHHHHhC-CCceEEE-------c--cc----------CCHHH-HHHHHHcCCCEEEEcc
Q 010640 261 VNVVVLDSSQ-GNSSFQIEMIKYAKKTY-PELDVIG-------G--NV----------VTMYQ-AQNLIEAGVDGLRVGM 318 (505)
Q Consensus 261 ad~I~i~~~~-g~~~~~~~~i~~l~~~~-~~~~Vi~-------g--~V----------~t~e~-a~~l~~aGad~I~v~~ 318 (505)
++-+++.+.. .++.-..++++.+.+.| ++..++. | .| .+..+ +.++.+.|+..+.+-
T Consensus 105 a~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~T- 183 (262)
T PLN02446 105 ASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVH- 183 (262)
T ss_pred CCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEE-
Confidence 9999995421 11001135566666666 3222211 1 11 13444 688888898887552
Q ss_pred CCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC--CCEEEecccc
Q 010640 319 GSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG--ASTVMMGSFL 383 (505)
Q Consensus 319 g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG--A~~V~~G~~f 383 (505)
...++-+. ..|.++.+..+++ ..++|||++|||.+-.|+.+...+| ..+|.+|+++
T Consensus 184 -----dI~rDGtl-~G~d~el~~~l~~---~~~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl 241 (262)
T PLN02446 184 -----GVDVEGKR-LGIDEELVALLGE---HSPIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSAL 241 (262)
T ss_pred -----EEcCCCcc-cCCCHHHHHHHHh---hCCCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeH
Confidence 11111111 1255555555444 4679999999999999999999985 6889999886
No 234
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=97.93 E-value=0.00015 Score=74.35 Aligned_cols=135 Identities=26% Similarity=0.291 Sum_probs=88.8
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC-------------------c-----hhHHHHHHHHHHhCC-CceEEEc----cc-
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN-------------------S-----SFQIEMIKYAKKTYP-ELDVIGG----NV- 297 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~-------------------~-----~~~~~~i~~l~~~~~-~~~Vi~g----~V- 297 (505)
++.+.++.+.++|.|.|+||.++|+ + .-..+.++.+|+.++ +.||.+. +.
T Consensus 150 ~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~ 229 (363)
T COG1902 150 DFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFF 229 (363)
T ss_pred HHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccC
Confidence 3666677888999999999986532 1 245788888888874 3455541 11
Q ss_pred ----CC----HHHHHHHHHcC-CCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHH
Q 010640 298 ----VT----MYQAQNLIEAG-VDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVK 368 (505)
Q Consensus 298 ----~t----~e~a~~l~~aG-ad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~k 368 (505)
.+ .+-++.|.+.| +|++.++.+...........+ ...... .........++|+|+.|+|.++..+.+
T Consensus 230 ~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~-~~~~~~---~a~~i~~~~~~pvi~~G~i~~~~~Ae~ 305 (363)
T COG1902 230 DGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSG-PGYQVE---FAARIKKAVRIPVIAVGGINDPEQAEE 305 (363)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccc-cchhHH---HHHHHHHhcCCCEEEeCCCCCHHHHHH
Confidence 12 44578888899 799998743221111111110 001111 112223345699999999999999999
Q ss_pred HHHhC-CCEEEecccccCC
Q 010640 369 ALVLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 369 al~lG-A~~V~~G~~f~~~ 386 (505)
+++-| ||+|.+|++|+.-
T Consensus 306 ~l~~g~aDlVa~gR~~lad 324 (363)
T COG1902 306 ILASGRADLVAMGRPFLAD 324 (363)
T ss_pred HHHcCCCCEEEechhhhcC
Confidence 99998 9999999999863
No 235
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=97.92 E-value=0.0003 Score=66.87 Aligned_cols=123 Identities=17% Similarity=0.194 Sum_probs=92.5
Q ss_pred CccHHHHHHHHHHc-CccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCccee
Q 010640 246 RESDKERLEHLVKA-GVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSIC 324 (505)
Q Consensus 246 ~~~~~e~~~~liea-Gad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~ 324 (505)
.+...+.++.+.+. +--++.|-.+. .-++.++.+++. ++++-++.|.|.+.+..+.++|+++|.. .
T Consensus 63 ~e~~i~~a~~l~~~~~~~~iKIP~T~----~gl~ai~~L~~~--gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP-------~ 129 (211)
T cd00956 63 AEGMVAEARKLASLGGNVVVKIPVTE----DGLKAIKKLSEE--GIKTNVTAIFSAAQALLAAKAGATYVSP-------F 129 (211)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEcCcH----hHHHHHHHHHHc--CCceeeEEecCHHHHHHHHHcCCCEEEE-------e
Confidence 34566677777776 43333342222 346777777777 7999999999999999999999998632 2
Q ss_pred ecccccccCcChHHHHHHHHHHHhhcCCc---EEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 325 TTQEVCAVGRGQATAVYKVSSIAAQSGVP---VIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 325 ~~~~~~g~g~p~~~~l~~v~~~~~~~~ip---vIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
.+| ...+|.+....+.++.+.++.++.+ +++ |++++.++..|+.+||+.|-+...++
T Consensus 130 vgR-~~~~g~dg~~~i~~i~~~~~~~~~~tkil~A--s~r~~~ei~~a~~~Gad~vTv~~~vl 189 (211)
T cd00956 130 VGR-IDDLGGDGMELIREIRTIFDNYGFDTKILAA--SIRNPQHVIEAALAGADAITLPPDVL 189 (211)
T ss_pred cCh-HhhcCCCHHHHHHHHHHHHHHcCCCceEEec--ccCCHHHHHHHHHcCCCEEEeCHHHH
Confidence 223 4456778888888888888888766 555 99999999999999999999997654
No 236
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=97.91 E-value=0.00015 Score=74.03 Aligned_cols=128 Identities=18% Similarity=0.162 Sum_probs=85.7
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC------------------------chhHHHHHHHHHHhCCCceEEEcc-------
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN------------------------SSFQIEMIKYAKKTYPELDVIGGN------- 296 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~------------------------~~~~~~~i~~l~~~~~~~~Vi~g~------- 296 (505)
.+.+.++.+.++|.|.|.|+..+|+ .....+.++.+|+..+.-+|.++-
T Consensus 153 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~ 232 (338)
T cd02933 153 DFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFN 232 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCC
Confidence 3556677888899999999875521 134568888888876322555421
Q ss_pred -c---CCH----HHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHH
Q 010640 297 -V---VTM----YQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVK 368 (505)
Q Consensus 297 -V---~t~----e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~k 368 (505)
. .+. +.++.|.++|+|++.|+.|.- . ....++ .......+++ ..++|||+.|||. +.++.+
T Consensus 233 ~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~--~--~~~~~~---~~~~~~~ik~---~~~ipvi~~G~i~-~~~a~~ 301 (338)
T cd02933 233 DMGDSDPEATFSYLAKELNKRGLAYLHLVEPRV--A--GNPEDQ---PPDFLDFLRK---AFKGPLIAAGGYD-AESAEA 301 (338)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCC--C--Cccccc---chHHHHHHHH---HcCCCEEEECCCC-HHHHHH
Confidence 0 133 445778889999999964321 1 111222 2222333333 3579999999997 999999
Q ss_pred HHHhC-CCEEEecccccCC
Q 010640 369 ALVLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 369 al~lG-A~~V~~G~~f~~~ 386 (505)
+++.| ||+|++|++|+.-
T Consensus 302 ~l~~g~~D~V~~gR~~lad 320 (338)
T cd02933 302 ALADGKADLVAFGRPFIAN 320 (338)
T ss_pred HHHcCCCCEEEeCHhhhhC
Confidence 99987 9999999999753
No 237
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=97.90 E-value=0.00044 Score=66.82 Aligned_cols=136 Identities=11% Similarity=0.164 Sum_probs=93.9
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEccc-CCHHHHHHHHHcCCCEEEEcc---CC---
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNV-VTMYQAQNLIEAGVDGLRVGM---GS--- 320 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V-~t~e~a~~l~~aGad~I~v~~---g~--- 320 (505)
+..+.+..+.+.|+.++.+.+...+..+.++.++.+++.. ++||+.+.. .++.....+..+|||+|.+-. ..
T Consensus 62 d~~~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~v-~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L~~~~l 140 (247)
T PRK13957 62 HPVQIAKTYETLGASAISVLTDQSYFGGSLEDLKSVSSEL-KIPVLRKDFILDEIQIREARAFGASAILLIVRILTPSQI 140 (247)
T ss_pred CHHHHHHHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHHhc-CCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhCCHHHH
Confidence 4668888899999999998776555556678888888876 789999754 688888888889999996532 00
Q ss_pred ----------cc---eeecc---------------cccccCcChH----HHHHHHHHHHhhcCCcEEecCCCCCHHHHHH
Q 010640 321 ----------GS---ICTTQ---------------EVCAVGRGQA----TAVYKVSSIAAQSGVPVIADGGISNSGHIVK 368 (505)
Q Consensus 321 ----------g~---~~~~~---------------~~~g~g~p~~----~~l~~v~~~~~~~~ipvIa~GGI~~~~di~k 368 (505)
|- +.... ...++..-++ .....+....+ .+..+|+.+||.++.|+.+
T Consensus 141 ~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip-~~~~~IsESGI~t~~d~~~ 219 (247)
T PRK13957 141 KSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLP-PNIVKVGESGIESRSDLDK 219 (247)
T ss_pred HHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCC-CCcEEEEcCCCCCHHHHHH
Confidence 00 00000 0122222222 23333344443 2577899999999999999
Q ss_pred HHHhCCCEEEecccccCC
Q 010640 369 ALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 369 al~lGA~~V~~G~~f~~~ 386 (505)
...+ ||+|.+|+.|+.+
T Consensus 220 l~~~-~davLvG~~lm~~ 236 (247)
T PRK13957 220 FRKL-VDAALIGTYFMEK 236 (247)
T ss_pred HHHh-CCEEEECHHHhCC
Confidence 8876 9999999998754
No 238
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=97.90 E-value=0.00013 Score=67.59 Aligned_cols=128 Identities=24% Similarity=0.363 Sum_probs=87.5
Q ss_pred HHHHHHHHcCccEEEEeC-----CCCC---chhHHHHHHHHHHhCCCceEEEcccC-------CHHHHHHHHHcCCCEEE
Q 010640 251 ERLEHLVKAGVNVVVLDS-----SQGN---SSFQIEMIKYAKKTYPELDVIGGNVV-------TMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~-----~~g~---~~~~~~~i~~l~~~~~~~~Vi~g~V~-------t~e~a~~l~~aGad~I~ 315 (505)
+.....+++|+|.+++.. ..|. .+.+++..++.|+.+|++++-+ +|. ..+-|.+|.++|+|.|.
T Consensus 72 ~~f~~aV~AGAdliEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsV-TVPHiL~ld~Qv~LA~~L~~~GaDiIQ 150 (242)
T PF04481_consen 72 ELFVAAVKAGADLIEIGNFDSFYAQGRRFSAEEVLALTRETRSLLPDITLSV-TVPHILPLDQQVQLAEDLVKAGADIIQ 150 (242)
T ss_pred HHHHHHHHhCCCEEEecchHHHHhcCCeecHHHHHHHHHHHHHhCCCCceEE-ecCccccHHHHHHHHHHHHHhCCcEEE
Confidence 555667899999999943 2342 2678888999999999888765 342 24568889999999886
Q ss_pred EccCCcceeeccc---ccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 316 VGMGSGSICTTQE---VCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 316 v~~g~g~~~~~~~---~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
--.|..+...... ...-..|++.+..++.+ ..++||+.+.|+.+- -+=-|+++||++|++|+..
T Consensus 151 TEGgtss~p~~~g~lglIekaapTLAaay~ISr---~v~iPVlcASGlS~v-T~PmAiaaGAsGVGVGSav 217 (242)
T PF04481_consen 151 TEGGTSSKPTSPGILGLIEKAAPTLAAAYAISR---AVSIPVLCASGLSAV-TAPMAIAAGASGVGVGSAV 217 (242)
T ss_pred cCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHh---ccCCceEeccCcchh-hHHHHHHcCCcccchhHHh
Confidence 5322111111111 11112366666665554 467999999998654 4557899999999999976
No 239
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.90 E-value=0.00047 Score=64.43 Aligned_cols=124 Identities=20% Similarity=0.171 Sum_probs=85.0
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCC-----chhHHHHHHHHHHhC-CCceEEEcccC----CHHHHH----HHHHcCC
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGN-----SSFQIEMIKYAKKTY-PELDVIGGNVV----TMYQAQ----NLIEAGV 311 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~-----~~~~~~~i~~l~~~~-~~~~Vi~g~V~----t~e~a~----~l~~aGa 311 (505)
.++..+.++.+.+.|+|.+.+....+. .....+.++.+.+.. .++|+++.+.. +.+... .+.+.|+
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~ 143 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGA 143 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 356778888999999999988654321 355677777787764 37898886652 444433 3567899
Q ss_pred CEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 312 DGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 312 d~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
++|+.+.+... +...+..+..+.+... .++|++..||+.+...+..++.+||+++.+|
T Consensus 144 ~~iK~~~~~~~----------~~~~~~~~~~i~~~~~-~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 144 DFIKTSTGFGG----------GGATVEDVKLMKEAVG-GRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred CEEEeCCCCCC----------CCCCHHHHHHHHHhcc-cCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 99988642110 1123334444443322 1579999999999999999999999999876
No 240
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.89 E-value=0.0003 Score=66.94 Aligned_cols=121 Identities=19% Similarity=0.260 Sum_probs=86.1
Q ss_pred cceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEE
Q 010640 236 KWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 236 ~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~ 315 (505)
++.+|+..-. ..+.++.++++|+++++ +.+.. .+.++..++. ++|++. ++.|++++..+.++|+|++.
T Consensus 67 ~~~vGaGTV~---~~~~~~~a~~aGA~Fiv---sP~~~---~~v~~~~~~~--~i~~iP-G~~T~~E~~~A~~~Gad~vk 134 (213)
T PRK06552 67 EVLIGAGTVL---DAVTARLAILAGAQFIV---SPSFN---RETAKICNLY--QIPYLP-GCMTVTEIVTALEAGSEIVK 134 (213)
T ss_pred CeEEeeeeCC---CHHHHHHHHHcCCCEEE---CCCCC---HHHHHHHHHc--CCCEEC-CcCCHHHHHHHHHcCCCEEE
Confidence 4677776432 45778889999999997 33332 3455555555 788877 68899999999999999997
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+= + ..-.| +..+..++... .++|+++.|||. ..++...+++||+++.+|+.+.
T Consensus 135 lF--P--------a~~~G---~~~ik~l~~~~--p~ip~~atGGI~-~~N~~~~l~aGa~~vavgs~l~ 187 (213)
T PRK06552 135 LF--P--------GSTLG---PSFIKAIKGPL--PQVNVMVTGGVN-LDNVKDWFAAGADAVGIGGELN 187 (213)
T ss_pred EC--C--------cccCC---HHHHHHHhhhC--CCCEEEEECCCC-HHHHHHHHHCCCcEEEEchHHh
Confidence 61 0 01122 22233333322 249999999986 7999999999999999999885
No 241
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.89 E-value=0.0006 Score=66.32 Aligned_cols=173 Identities=13% Similarity=-0.024 Sum_probs=107.2
Q ss_pred CHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCccE
Q 010640 184 DLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVNV 263 (505)
Q Consensus 184 ~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad~ 263 (505)
+..++++.+.+.+.+.+-|+|-+...|--.-.++++..... ....+.++..+. ..+.++.+++.|++-
T Consensus 32 ~p~~~a~~~~~~g~~~lhivDLd~a~g~~~n~~~i~~i~~~--------~~~~v~vgGGIr----s~e~~~~~l~~Ga~~ 99 (243)
T TIGR01919 32 SLESAAKWWEQGGAEWIHLVDLDAAFGGGNNEMMLEEVVKL--------LVVVEELSGGRR----DDSSLRAALTGGRAR 99 (243)
T ss_pred CHHHHHHHHHhCCCeEEEEEECCCCCCCcchHHHHHHHHHH--------CCCCEEEcCCCC----CHHHHHHHHHcCCCE
Confidence 45577788888889889998863222555556666654321 112345555654 557888899999999
Q ss_pred EEEeCCCCCchhHHHHHHHHHHhCCCceEEE----c----------------ccCCHHHHHHHHHcCCCEEEEc-cCCcc
Q 010640 264 VVLDSSQGNSSFQIEMIKYAKKTYPELDVIG----G----------------NVVTMYQAQNLIEAGVDGLRVG-MGSGS 322 (505)
Q Consensus 264 I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~----g----------------~V~t~e~a~~l~~aGad~I~v~-~g~g~ 322 (505)
+++.+..-. ..+.++.+.+.+++- +++ + ...-.+.++++.+.|+..+.+- +.
T Consensus 100 vvigT~a~~---~p~~~~~~~~~~g~~-ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~--- 172 (243)
T TIGR01919 100 VNGGTAALE---NPWWAAAVIRYGGDI-VAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDSK--- 172 (243)
T ss_pred EEECchhhC---CHHHHHHHHHHcccc-EEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHhCCCCEEEEEecC---
Confidence 988553221 123444444554321 111 1 0112355677888898877552 21
Q ss_pred eeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHH---HhCCCEEEecccc
Q 010640 323 ICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKAL---VLGASTVMMGSFL 383 (505)
Q Consensus 323 ~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal---~lGA~~V~~G~~f 383 (505)
++-+.- .|.+..+..+++ ..++|||++||+++..|+.++- .+|+++|.+|++|
T Consensus 173 ----~dGt~~-G~d~~l~~~l~~---~~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al 228 (243)
T TIGR01919 173 ----KDGLSG-GPNELLLEVVAA---RTDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLL 228 (243)
T ss_pred ----CcccCC-CcCHHHHHHHHh---hCCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHH
Confidence 111111 255555544443 3579999999999999999874 4599999999987
No 242
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=97.87 E-value=0.00023 Score=66.44 Aligned_cols=118 Identities=18% Similarity=0.176 Sum_probs=74.0
Q ss_pred HHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEcc-CCcceeecccccc
Q 010640 253 LEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGM-GSGSICTTQEVCA 331 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~-g~g~~~~~~~~~g 331 (505)
.+.+.+.|++.+++.. ... ....++.++.. +..+.+ .+.+.+++..+.+.|+|++.++. -++.. ..+
T Consensus 65 ~~~a~~~g~~~vh~~~--~~~--~~~~~~~~~~~--~~~~g~-~~~t~~~~~~~~~~g~d~i~~~~~~~~~~-----~~~ 132 (196)
T cd00564 65 VDLALAVGADGVHLGQ--DDL--PVAEARALLGP--DLIIGV-STHSLEEALRAEELGADYVGFGPVFPTPT-----KPG 132 (196)
T ss_pred HHHHHHcCCCEEecCc--ccC--CHHHHHHHcCC--CCEEEe-eCCCHHHHHHHhhcCCCEEEECCccCCCC-----CCC
Confidence 5567788999776532 211 12222222221 344433 45688999999999999998852 11110 011
Q ss_pred c-CcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 332 V-GRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 332 ~-g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
. ....+..+.++++ ..++||+++||| +..++.+++.+||+++.+|+.|..+
T Consensus 133 ~~~~~~~~~~~~~~~---~~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~g~~i~~~ 184 (196)
T cd00564 133 AGPPLGLELLREIAE---LVEIPVVAIGGI-TPENAAEVLAAGADGVAVISAITGA 184 (196)
T ss_pred CCCCCCHHHHHHHHH---hCCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhcC
Confidence 1 1122344444433 256999999999 5799999999999999999988643
No 243
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.87 E-value=0.00031 Score=66.16 Aligned_cols=122 Identities=24% Similarity=0.279 Sum_probs=85.4
Q ss_pred cceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEE
Q 010640 236 KWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 236 ~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~ 315 (505)
++.+|+..-. ..+.++.++++|+++++ +.+.. .+.++..++. ++|.+. ++.|+.++..+.++|++.++
T Consensus 59 ~~~vGAGTVl---~~~~a~~a~~aGA~Fiv---sP~~~---~~v~~~~~~~--~i~~iP-G~~TptEi~~A~~~Ga~~vK 126 (204)
T TIGR01182 59 DALIGAGTVL---NPEQLRQAVDAGAQFIV---SPGLT---PELAKHAQDH--GIPIIP-GVATPSEIMLALELGITALK 126 (204)
T ss_pred CCEEEEEeCC---CHHHHHHHHHcCCCEEE---CCCCC---HHHHHHHHHc--CCcEEC-CCCCHHHHHHHHHCCCCEEE
Confidence 4677776432 45778889999999995 33322 3555556665 788877 78999999999999999998
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+=- ..... |...+.++ +.-. -++|+++.|||.- .++...|++||.+|++|+.+.
T Consensus 127 lFP-------A~~~G--G~~yikal---~~pl--p~i~~~ptGGV~~-~N~~~~l~aGa~~vg~Gs~L~ 180 (204)
T TIGR01182 127 LFP-------AEVSG--GVKMLKAL---AGPF--PQVRFCPTGGINL-ANVRDYLAAPNVACGGGSWLV 180 (204)
T ss_pred ECC-------chhcC--CHHHHHHH---hccC--CCCcEEecCCCCH-HHHHHHHhCCCEEEEEChhhc
Confidence 720 00000 11222222 2222 2599999999865 899999999999999999875
No 244
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=97.86 E-value=0.00013 Score=75.13 Aligned_cols=137 Identities=20% Similarity=0.239 Sum_probs=88.0
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC------------------------chhHHHHHHHHHHhCC-CceEEEc--cc---
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN------------------------SSFQIEMIKYAKKTYP-ELDVIGG--NV--- 297 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~------------------------~~~~~~~i~~l~~~~~-~~~Vi~g--~V--- 297 (505)
.+.+.++.+.++|.|.|.|+.++|+ .....+.++.+|+.++ +.+|.+. ..
T Consensus 138 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~ 217 (353)
T cd02930 138 DFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLV 217 (353)
T ss_pred HHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccC
Confidence 3556677788899999999874421 1345678888888873 4555431 11
Q ss_pred ---CCH----HHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHH
Q 010640 298 ---VTM----YQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKAL 370 (505)
Q Consensus 298 ---~t~----e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal 370 (505)
.+. +-++.|.++|+|+|.|+.+--. ...... ....|...-+....+..+..++||++.|++.++.++.+++
T Consensus 218 ~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e-~~~~~~-~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i 295 (353)
T cd02930 218 EGGSTWEEVVALAKALEAAGADILNTGIGWHE-ARVPTI-ATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLL 295 (353)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCC-CCCccc-cccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHH
Confidence 243 3456778899999999642100 000000 0001211112223344445689999999999999999999
Q ss_pred HhC-CCEEEecccccCC
Q 010640 371 VLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 371 ~lG-A~~V~~G~~f~~~ 386 (505)
..| +|+|++|+.|+.-
T Consensus 296 ~~g~~D~V~~gR~~l~d 312 (353)
T cd02930 296 ADGDADMVSMARPFLAD 312 (353)
T ss_pred HCCCCChhHhhHHHHHC
Confidence 987 9999999998753
No 245
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.82 E-value=0.0012 Score=71.16 Aligned_cols=183 Identities=17% Similarity=0.141 Sum_probs=111.3
Q ss_pred CHHHHHHHHHHCCCCeeEEeeC-CeeeeEEee---chhhhhhcCCCCCCCccCCCCcceEEEeecCCcc-------HHHH
Q 010640 184 DLGQIDEVLEKNDVDFVVLEKD-GERLDVVTR---EDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRES-------DKER 252 (505)
Q Consensus 184 ~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~---~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~-------~~e~ 252 (505)
+..+.++.+.+.+.+.|-++|= +..-|-..+ -++++..... -.-.+.+|..+.+.++ ..+.
T Consensus 268 dPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~--------~~ip~~vGGGIr~~~d~~~~~~~~~e~ 339 (538)
T PLN02617 268 KPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASEN--------VFVPLTVGGGIRDFTDANGRYYSSLEV 339 (538)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhh--------CCCCEEEcCCccccccccccccchHHH
Confidence 3456788888999999999984 322222222 3444443221 1224556666654432 3688
Q ss_pred HHHHHHcCccEEEEeCCC-CC--------chhHHHHHHHHHHhCCCceEEE----c------------------------
Q 010640 253 LEHLVKAGVNVVVLDSSQ-GN--------SSFQIEMIKYAKKTYPELDVIG----G------------------------ 295 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~-g~--------~~~~~~~i~~l~~~~~~~~Vi~----g------------------------ 295 (505)
++.++++|+|-+.+.+.. -+ .....++++.+.+.|..-.|++ +
T Consensus 340 ~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~ 419 (538)
T PLN02617 340 ASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPGPNG 419 (538)
T ss_pred HHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCccccccccccccccCcCc
Confidence 999999999999996521 00 0112356677777773322222 1
Q ss_pred -----------------ccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecC
Q 010640 296 -----------------NVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADG 358 (505)
Q Consensus 296 -----------------~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~G 358 (505)
++.-.+-++.+.+.|+.-|.+- +..++-+..| +.++.+..+. ...++|||++|
T Consensus 420 ~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t------~id~DGt~~G-~d~~l~~~v~---~~~~ipviasG 489 (538)
T PLN02617 420 EEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLN------CIDCDGQGKG-FDIELVKLVS---DAVTIPVIASS 489 (538)
T ss_pred ccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEe------eccccccccC-cCHHHHHHHH---hhCCCCEEEEC
Confidence 1112355677777888766542 1111111112 3444444443 34679999999
Q ss_pred CCCCHHHHHHHHH-hCCCEEEeccccc
Q 010640 359 GISNSGHIVKALV-LGASTVMMGSFLA 384 (505)
Q Consensus 359 GI~~~~di~kal~-lGA~~V~~G~~f~ 384 (505)
|+.+..|+.+++. .||+++..|+.|.
T Consensus 490 G~g~~~d~~~~~~~~~~~a~~aa~~fh 516 (538)
T PLN02617 490 GAGTPEHFSDVFSKTNASAALAAGIFH 516 (538)
T ss_pred CCCCHHHHHHHHhcCCccEEEEEeeec
Confidence 9999999999997 6799999999984
No 246
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.80 E-value=0.00051 Score=66.96 Aligned_cols=126 Identities=12% Similarity=0.094 Sum_probs=83.3
Q ss_pred HHHHHHHHHHcCccEEEEeCCC-CCchhHHHHHHHHHHhCCCceE--EEcccCCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQ-GNSSFQIEMIKYAKKTYPELDV--IGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~-g~~~~~~~~i~~l~~~~~~~~V--i~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
..+.++.+.++|++.+.++... .......+.++.+++. ++.. .+..-.+.+..+.+.+..-.++.++..+|...
T Consensus 90 ~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~--Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~- 166 (244)
T PRK13125 90 LDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNK--GLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGV- 166 (244)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHc--CCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCC-
Confidence 5567888999999999986421 1123445666777776 4433 33444567788888888777776663332211
Q ss_pred cccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
. +.......+.++++... +.||+.+|||.++.++.+++.+|||++.+||.|.
T Consensus 167 ~-----~~~~~~~~i~~lr~~~~--~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~ 218 (244)
T PRK13125 167 P-----LPVSVERNIKRVRNLVG--NKYLVVGFGLDSPEDARDALSAGADGVVVGTAFI 218 (244)
T ss_pred C-----chHHHHHHHHHHHHhcC--CCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHH
Confidence 0 11122234444444332 3789999999999999999999999999999875
No 247
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.79 E-value=0.00022 Score=70.18 Aligned_cols=92 Identities=21% Similarity=0.199 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHhCCC-ceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhh--cC
Q 010640 275 FQIEMIKYAKKTYPE-LDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQ--SG 351 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~-~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~--~~ 351 (505)
...+.++.+|+.+|. .+|.+ ++.+.+++..+.++|+|.|.+.+ +.++.+.++.+..+. .+
T Consensus 167 ~i~~~v~~~k~~~p~~~~I~V-Ev~tleea~~A~~~GaDiI~LDn----------------~~~e~l~~~v~~~~~~~~~ 229 (273)
T PRK05848 167 DLKEFIQHARKNIPFTAKIEI-ECESLEEAKNAMNAGADIVMCDN----------------MSVEEIKEVVAYRNANYPH 229 (273)
T ss_pred cHHHHHHHHHHhCCCCceEEE-EeCCHHHHHHHHHcCCCEEEECC----------------CCHHHHHHHHHHhhccCCC
Confidence 456788888888874 66666 99999999999999999986532 345555555554332 24
Q ss_pred CcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 352 VPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 352 ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+.+.++||| |+..+.+...+|+|.+.+|+++.
T Consensus 230 ~~ieAsGgI-t~~ni~~ya~~GvD~IsvG~l~~ 261 (273)
T PRK05848 230 VLLEASGNI-TLENINAYAKSGVDAISSGSLIH 261 (273)
T ss_pred eEEEEECCC-CHHHHHHHHHcCCCEEEeChhhc
Confidence 679999999 99999999999999999999764
No 248
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.77 E-value=3.8e-05 Score=65.40 Aligned_cols=55 Identities=15% Similarity=0.260 Sum_probs=50.5
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
..++.++|.+ ++.++.+++++.++++.|.+.+...+||+|+ |+++|+||.+||.+
T Consensus 57 ~~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 57 HPRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 3568899988 8999999999999999999999999999998 99999999999864
No 249
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=97.75 E-value=0.00022 Score=66.70 Aligned_cols=122 Identities=26% Similarity=0.368 Sum_probs=81.4
Q ss_pred cceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEE
Q 010640 236 KWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 236 ~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~ 315 (505)
.+.+|+..-. ..+.++.++++|++++.- .+. ..+.++..++. ++|++. ++.|+.++..+.++|++.++
T Consensus 59 ~~~vGAGTV~---~~e~a~~a~~aGA~FivS---P~~---~~~v~~~~~~~--~i~~iP-G~~TptEi~~A~~~G~~~vK 126 (196)
T PF01081_consen 59 DLLVGAGTVL---TAEQAEAAIAAGAQFIVS---PGF---DPEVIEYAREY--GIPYIP-GVMTPTEIMQALEAGADIVK 126 (196)
T ss_dssp TSEEEEES-----SHHHHHHHHHHT-SEEEE---SS-----HHHHHHHHHH--TSEEEE-EESSHHHHHHHHHTT-SEEE
T ss_pred CCeeEEEecc---CHHHHHHHHHcCCCEEEC---CCC---CHHHHHHHHHc--CCcccC-CcCCHHHHHHHHHCCCCEEE
Confidence 4677776432 457888999999999974 222 34566666776 788877 68999999999999999998
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+=- ..-.| -+..+..++.-. -++++++.|||.- .++...+.+|+.+|++|+.+.
T Consensus 127 ~FP----------A~~~G--G~~~ik~l~~p~--p~~~~~ptGGV~~-~N~~~~l~ag~~~vg~Gs~L~ 180 (196)
T PF01081_consen 127 LFP----------AGALG--GPSYIKALRGPF--PDLPFMPTGGVNP-DNLAEYLKAGAVAVGGGSWLF 180 (196)
T ss_dssp ETT----------TTTTT--HHHHHHHHHTTT--TT-EEEEBSS--T-TTHHHHHTSTTBSEEEESGGG
T ss_pred Eec----------chhcC--cHHHHHHHhccC--CCCeEEEcCCCCH-HHHHHHHhCCCEEEEECchhc
Confidence 720 01111 122222222222 2589999999875 789999999999999999875
No 250
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.75 E-value=2.9e-05 Score=68.44 Aligned_cols=57 Identities=12% Similarity=0.186 Sum_probs=52.9
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcC
Q 010640 165 KIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGY 223 (505)
Q Consensus 165 ~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~ 223 (505)
.+..+|+. +++++.+++++.+++++|+++++.++||+++|+++|-||-.+|.+....
T Consensus 66 ta~~iM~s--pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le 122 (187)
T COG3620 66 TAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLE 122 (187)
T ss_pred eHhhhccC--CeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhc
Confidence 35677998 9999999999999999999999999999999999999999999998754
No 251
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=97.74 E-value=0.00082 Score=65.91 Aligned_cols=126 Identities=17% Similarity=0.147 Sum_probs=79.1
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEE-ccCC-cceeec
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRV-GMGS-GSICTT 326 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v-~~g~-g~~~~~ 326 (505)
..+.++.+.++|++.+.++.-. .+...+.++.+++.-...-.++....+.+..+.+.+..-.+|.+ +..| ++.
T Consensus 104 ~e~f~~~~~~aGvdgviipDlp--~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~--- 178 (256)
T TIGR00262 104 VEEFYAKCKEVGVDGVLVADLP--LEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGA--- 178 (256)
T ss_pred HHHHHHHHHHcCCCEEEECCCC--hHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCC---
Confidence 3567888999999998885321 13445666666665212222344556677777776665445544 3211 111
Q ss_pred ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+ ..+..+....+..+++ ..+.||+.+|||.+++++.+++.+|||+|.+||.|.
T Consensus 179 ~--~~~~~~~~~~i~~lr~---~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv 231 (256)
T TIGR00262 179 R--NRAASALNELVKRLKA---YSAKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIV 231 (256)
T ss_pred c--ccCChhHHHHHHHHHh---hcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 0 0111122333433333 346899999999999999999999999999999985
No 252
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=97.74 E-value=2e-05 Score=58.15 Aligned_cols=46 Identities=15% Similarity=0.330 Sum_probs=41.6
Q ss_pred ccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccc
Q 010640 107 PIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWE 157 (505)
Q Consensus 107 ~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~ 157 (505)
+|.+++ +.+++++++.++.+.|.+ ++ +||+|+ +++++|+||.+|+.
T Consensus 4 ~m~~~~--~~v~~~~~l~~~~~~~~~~~~~~~~V~d~---~~~~~G~is~~dl~ 52 (57)
T PF00571_consen 4 IMTPPP--ITVSPDDSLEEALEIMRKNGISRLPVVDE---DGKLVGIISRSDLL 52 (57)
T ss_dssp HSBSSS--EEEETTSBHHHHHHHHHHHTSSEEEEEST---TSBEEEEEEHHHHH
T ss_pred CCcCCC--EEEcCcCcHHHHHHHHHHcCCcEEEEEec---CCEEEEEEEHHHHH
Confidence 466677 999999999999999999 77 999998 89999999999985
No 253
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=97.72 E-value=0.00073 Score=67.98 Aligned_cols=137 Identities=14% Similarity=0.184 Sum_probs=92.5
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHh-CCCceEEEccc-CCHHHHHHHHHcCCCEEEEcc-------
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKT-YPELDVIGGNV-VTMYQAQNLIEAGVDGLRVGM------- 318 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~-~~~~~Vi~g~V-~t~e~a~~l~~aGad~I~v~~------- 318 (505)
+..+.++...+.|+.++.+-+...+..+..+.++.+|+. . ++||..|.. .++-....+..+|||+|-+-.
T Consensus 140 dp~~iA~~Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~~~v-~lPvLrKDFIID~yQI~eAr~~GADAVLLIaaiL~~~~ 218 (338)
T PLN02460 140 DPVEIAQAYEKGGAACLSVLTDEKYFQGSFENLEAIRNAGV-KCPLLCKEFIVDAWQIYYARSKGADAILLIAAVLPDLD 218 (338)
T ss_pred CHHHHHHHHHhCCCcEEEEecCcCcCCCCHHHHHHHHHcCC-CCCEeeccccCCHHHHHHHHHcCCCcHHHHHHhCCHHH
Confidence 467888888899999998877655555667888888886 5 789999874 577777777788888874321
Q ss_pred -----------------------------CC-cc--e-eecccccccCcChHHHHHHHHH-----HHhhcCCcEEecCCC
Q 010640 319 -----------------------------GS-GS--I-CTTQEVCAVGRGQATAVYKVSS-----IAAQSGVPVIADGGI 360 (505)
Q Consensus 319 -----------------------------g~-g~--~-~~~~~~~g~g~p~~~~l~~v~~-----~~~~~~ipvIa~GGI 360 (505)
.. |. + -..|++..+-+. +.....+.. ..+..++-+|+.+||
T Consensus 219 L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vD-l~~t~~L~~~~~~~~i~~~~~~~VsESGI 297 (338)
T PLN02460 219 IKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVD-ISNTKKLLEGERGEQIREKGIIVVGESGL 297 (338)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceEC-HHHHHHHhhhccccccCCCCeEEEECCCC
Confidence 10 11 0 111222222222 222222222 111124568999999
Q ss_pred CCHHHHHHHHHhCCCEEEecccccCC
Q 010640 361 SNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 361 ~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
.++.|+.....+||++|.+|..|+.+
T Consensus 298 ~t~~Dv~~l~~~GadAvLVGEsLMr~ 323 (338)
T PLN02460 298 FTPDDVAYVQNAGVKAVLVGESLVKQ 323 (338)
T ss_pred CCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 99999999999999999999998754
No 254
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=97.72 E-value=0.00017 Score=72.88 Aligned_cols=130 Identities=25% Similarity=0.262 Sum_probs=77.4
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCC---------------CchhHHHHHHHHHHhCCCceEEEcc---cC-----CHHH
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQG---------------NSSFQIEMIKYAKKTYPELDVIGGN---VV-----TMYQ 302 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g---------------~~~~~~~~i~~l~~~~~~~~Vi~g~---V~-----t~e~ 302 (505)
++...+.++.+.+.|++.|-++..++ ++....+.++.+++.. ++||-+|- .. +.+-
T Consensus 65 ~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~-~~pvsvKiR~g~~~~~~~~~~~ 143 (309)
T PF01207_consen 65 PEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAV-PIPVSVKIRLGWDDSPEETIEF 143 (309)
T ss_dssp HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH--SSEEEEEEESECT--CHHHHHH
T ss_pred HHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhccc-ccceEEecccccccchhHHHHH
Confidence 33344455555555899998876431 2345677888888876 57876651 11 4667
Q ss_pred HHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHh-CCCEEEecc
Q 010640 303 AQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVL-GASTVMMGS 381 (505)
Q Consensus 303 a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~l-GA~~V~~G~ 381 (505)
++.+.++|+++|.|= +- ++...--+.+..+.+..+ ++..++|||+-|||.+..|+.+.+.. |+|+||+|+
T Consensus 144 ~~~l~~~G~~~i~vH--~R----t~~q~~~~~a~w~~i~~i---~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigR 214 (309)
T PF01207_consen 144 ARILEDAGVSAITVH--GR----TRKQRYKGPADWEAIAEI---KEALPIPVIANGDIFSPEDAERMLEQTGADGVMIGR 214 (309)
T ss_dssp HHHHHHTT--EEEEE--CS-----TTCCCTS---HHHHHHC---HHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEESH
T ss_pred HHHhhhcccceEEEe--cC----chhhcCCcccchHHHHHH---hhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEch
Confidence 888999999999772 11 111111122334445444 34456999999999999999999976 999999998
Q ss_pred cccC
Q 010640 382 FLAG 385 (505)
Q Consensus 382 ~f~~ 385 (505)
..+.
T Consensus 215 gal~ 218 (309)
T PF01207_consen 215 GALG 218 (309)
T ss_dssp HHCC
T ss_pred hhhh
Confidence 7653
No 255
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.70 E-value=0.00091 Score=66.62 Aligned_cols=128 Identities=20% Similarity=0.207 Sum_probs=80.6
Q ss_pred cHHHHHHHHHHc-CccEEEEeCC--CCC-chhHHHHHHHHHHhC-CCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcc
Q 010640 248 SDKERLEHLVKA-GVNVVVLDSS--QGN-SSFQIEMIKYAKKTY-PELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGS 322 (505)
Q Consensus 248 ~~~e~~~~liea-Gad~I~i~~~--~g~-~~~~~~~i~~l~~~~-~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~ 322 (505)
+....++...+. +-+++-+..- +.. .....+.++..+... .+..++.=...++..++.+.++|+-++.-- ++
T Consensus 151 eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl---~~ 227 (326)
T PRK11840 151 EAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPL---GA 227 (326)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEeec---cc
Confidence 344445555554 5677655332 111 123344444444432 134443335678999999999999666431 10
Q ss_pred eeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 323 ICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 323 ~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
..-.|.|+.....+....+. .++|||.++||.++.|+.+|+.+|||+|.+.|..+.
T Consensus 228 ----pIGsg~gv~~p~~i~~~~e~---~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~ 283 (326)
T PRK11840 228 ----PIGSGLGIQNPYTIRLIVEG---ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAE 283 (326)
T ss_pred ----cccCCCCCCCHHHHHHHHHc---CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceecc
Confidence 11133445555666555443 469999999999999999999999999999999863
No 256
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=97.70 E-value=0.00012 Score=75.00 Aligned_cols=138 Identities=25% Similarity=0.245 Sum_probs=87.0
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC-------------------c-----hhHHHHHHHHHHhCC-CceEEEc-------
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN-------------------S-----SFQIEMIKYAKKTYP-ELDVIGG------- 295 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~-------------------~-----~~~~~~i~~l~~~~~-~~~Vi~g------- 295 (505)
++.+.+..+.++|.|.|+||.++|+ + .-..+.++.+|+.++ +.+|.+.
T Consensus 150 ~f~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~ 229 (341)
T PF00724_consen 150 DFAQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFV 229 (341)
T ss_dssp HHHHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSS
T ss_pred HHHHHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeeccc
Confidence 3666777888999999999976532 1 245788888888763 4556552
Q ss_pred --ccCCHH---HHHHHHHcCCCEEEEccCCcceeec-ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHH
Q 010640 296 --NVVTMY---QAQNLIEAGVDGLRVGMGSGSICTT-QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKA 369 (505)
Q Consensus 296 --~V~t~e---~a~~l~~aGad~I~v~~g~g~~~~~-~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~ka 369 (505)
.....+ .++.+.++|+|++.++.+....... ........+....+..+....+..++|||+.|||.++..+.++
T Consensus 230 ~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~ 309 (341)
T PF00724_consen 230 EGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAEKA 309 (341)
T ss_dssp TTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchhhhHHH
Confidence 111223 3677888999998776333221111 1111111111111122223333457999999999999999999
Q ss_pred HHhC-CCEEEecccccC
Q 010640 370 LVLG-ASTVMMGSFLAG 385 (505)
Q Consensus 370 l~lG-A~~V~~G~~f~~ 385 (505)
++-| ||+|.+|++|+.
T Consensus 310 l~~g~~DlV~~gR~~la 326 (341)
T PF00724_consen 310 LEEGKADLVAMGRPLLA 326 (341)
T ss_dssp HHTTSTSEEEESHHHHH
T ss_pred HhcCCceEeeccHHHHh
Confidence 9988 999999999975
No 257
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=97.67 E-value=0.001 Score=64.22 Aligned_cols=136 Identities=16% Similarity=0.245 Sum_probs=90.3
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEccc-CCHHHHHHHHHcCCCEEEEcc--------
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNV-VTMYQAQNLIEAGVDGLRVGM-------- 318 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V-~t~e~a~~l~~aGad~I~v~~-------- 318 (505)
+..+.+....+.|+.++.+-+...+..+..+.++.+++.. .+||..|.- .++.....+...|+|+|-+-.
T Consensus 67 dp~~ia~~Ye~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~v-~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~L~~~~l 145 (254)
T COG0134 67 DPVEIAKAYEEGGAAAISVLTDPKYFQGSFEDLRAVRAAV-DLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQL 145 (254)
T ss_pred CHHHHHHHHHHhCCeEEEEecCccccCCCHHHHHHHHHhc-CCCeeeccCCCCHHHHHHHHHcCcccHHHHHHhcCHHHH
Confidence 4567788888889999988776665666678888888877 789888854 466666666677777663210
Q ss_pred ------------------C----------Ccc--e-eecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHH
Q 010640 319 ------------------G----------SGS--I-CTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIV 367 (505)
Q Consensus 319 ------------------g----------~g~--~-~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~ 367 (505)
| .|. + -..|.+..+-+ .+.....+....+ .+..+|+-+||.++.|+.
T Consensus 146 ~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~v-dl~~t~~la~~~p-~~~~~IsESGI~~~~dv~ 223 (254)
T COG0134 146 EELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTLEV-DLETTEKLAPLIP-KDVILISESGISTPEDVR 223 (254)
T ss_pred HHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcchhee-cHHHHHHHHhhCC-CCcEEEecCCCCCHHHHH
Confidence 0 000 0 01122222211 1222223333333 247799999999999999
Q ss_pred HHHHhCCCEEEecccccCC
Q 010640 368 KALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 368 kal~lGA~~V~~G~~f~~~ 386 (505)
+....||+++.+|+.|+.+
T Consensus 224 ~l~~~ga~a~LVG~slM~~ 242 (254)
T COG0134 224 RLAKAGADAFLVGEALMRA 242 (254)
T ss_pred HHHHcCCCEEEecHHHhcC
Confidence 9999999999999999764
No 258
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00083 Score=67.23 Aligned_cols=141 Identities=26% Similarity=0.252 Sum_probs=90.7
Q ss_pred CCcceEEEeecCCccHHHHHHHHHHcCccEEEEeCCC----------C-----CchhHHHHHHHHHHhCCCceEEEcc--
Q 010640 234 DGKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQ----------G-----NSSFQIEMIKYAKKTYPELDVIGGN-- 296 (505)
Q Consensus 234 ~~~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~----------g-----~~~~~~~~i~~l~~~~~~~~Vi~g~-- 296 (505)
+..+++-.....++.. ..+..+++.-+|.|-++..+ | ..+-+-+.+..++..+ +.||-+|-
T Consensus 73 D~PLIvQf~~ndp~~l-l~Aa~lv~~y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l-~~pVs~KIRI 150 (358)
T KOG2335|consen 73 DRPLIVQFGGNDPENL-LKAARLVQPYCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANL-NVPVSVKIRI 150 (358)
T ss_pred CCceEEEEcCCCHHHH-HHHHHHhhhhcCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhc-CCCeEEEEEe
Confidence 3344544443333333 33444555545887775432 1 1233456677777776 56665541
Q ss_pred -c---CCHHHHHHHHHcCCCEEEEccCCcceeecccccc--cCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHH
Q 010640 297 -V---VTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCA--VGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKAL 370 (505)
Q Consensus 297 -V---~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g--~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal 370 (505)
+ .|.+.++.+.++|++.+.| || -++...| .+.-..+++..+++.... +|||+-|+|.+..|+..++
T Consensus 151 ~~d~~kTvd~ak~~e~aG~~~ltV--HG----Rtr~~kg~~~~pad~~~i~~v~~~~~~--ipviaNGnI~~~~d~~~~~ 222 (358)
T KOG2335|consen 151 FVDLEKTVDYAKMLEDAGVSLLTV--HG----RTREQKGLKTGPADWEAIKAVRENVPD--IPVIANGNILSLEDVERCL 222 (358)
T ss_pred cCcHHHHHHHHHHHHhCCCcEEEE--ec----ccHHhcCCCCCCcCHHHHHHHHHhCcC--CcEEeeCCcCcHHHHHHHH
Confidence 1 3788999999999999977 21 1233333 222345567666665433 9999999999999999999
Q ss_pred H-hCCCEEEeccccc
Q 010640 371 V-LGASTVMMGSFLA 384 (505)
Q Consensus 371 ~-lGA~~V~~G~~f~ 384 (505)
. -||++||.|..++
T Consensus 223 ~~tG~dGVM~arglL 237 (358)
T KOG2335|consen 223 KYTGADGVMSARGLL 237 (358)
T ss_pred HHhCCceEEecchhh
Confidence 8 9999999998765
No 259
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.65 E-value=0.00033 Score=57.90 Aligned_cols=76 Identities=13% Similarity=0.058 Sum_probs=60.2
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHH
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKER 252 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~ 252 (505)
+++++++++++.++.+.|.+++.+.+||+|+ |+++|+||..|+.+... . ..+.......+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~---------------~--~~v~~~~~l~~a 64 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR---------------L--VSIHPERSLFDA 64 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee---------------e--EEeCCCCcHHHH
Confidence 5788999999999999999999999999985 69999999999987532 1 122233446677
Q ss_pred HHHHHHcCccEEEEe
Q 010640 253 LEHLVKAGVNVVVLD 267 (505)
Q Consensus 253 ~~~lieaGad~I~i~ 267 (505)
++.+.+.++..+.+-
T Consensus 65 ~~~m~~~~~~~lpVv 79 (98)
T cd04618 65 ALLLLKNKIHRLPVI 79 (98)
T ss_pred HHHHHHCCCCEeeEE
Confidence 778888888887663
No 260
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=97.64 E-value=0.0017 Score=71.94 Aligned_cols=181 Identities=12% Similarity=0.122 Sum_probs=117.5
Q ss_pred ecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHH
Q 010640 179 VPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLV 257 (505)
Q Consensus 179 v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li 257 (505)
+..+.+..+..+.+.+.+...+-|+.| ..+-|= .+||....... .+++--..-. -...++....
T Consensus 66 i~~~~d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs--~~~l~~vr~~v-----------~~PvLrKDFI--id~~QI~ea~ 130 (695)
T PRK13802 66 LSDIPDPAALAREYEQGGASAISVLTEGRRFLGS--LDDFDKVRAAV-----------HIPVLRKDFI--VTDYQIWEAR 130 (695)
T ss_pred CCCCCCHHHHHHHHHHcCCcEEEEecCcCcCCCC--HHHHHHHHHhC-----------CCCEEecccc--CCHHHHHHHH
Confidence 345567888899999999999999977 666664 35554443211 1111111100 1234555666
Q ss_pred HcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChH
Q 010640 258 KAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQA 337 (505)
Q Consensus 258 eaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~ 337 (505)
..|+|+|.+-...=......++++..++. +..+++ +|.+.++...+.++|++.|-|- .|++..+-+. +
T Consensus 131 ~~GADavLLI~~~L~~~~l~~l~~~a~~l--Gme~Lv-Evh~~~el~~a~~~ga~iiGIN--------nRdL~tf~vd-~ 198 (695)
T PRK13802 131 AHGADLVLLIVAALDDAQLKHLLDLAHEL--GMTVLV-ETHTREEIERAIAAGAKVIGIN--------ARNLKDLKVD-V 198 (695)
T ss_pred HcCCCEeehhHhhcCHHHHHHHHHHHHHc--CCeEEE-EeCCHHHHHHHHhCCCCEEEEe--------CCCCccceeC-H
Confidence 78999986633211122334444444444 777777 8999999999999999988443 3444433333 2
Q ss_pred HHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCC
Q 010640 338 TAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGST 387 (505)
Q Consensus 338 ~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~ 387 (505)
.....+..... .++.+|+.+||.++.|+..+..+|||+|.+|+.|+.+.
T Consensus 199 ~~t~~L~~~ip-~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~~ 247 (695)
T PRK13802 199 NKYNELAADLP-DDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATAD 247 (695)
T ss_pred HHHHHHHhhCC-CCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCCC
Confidence 23333344443 25788999999999999999999999999999998753
No 261
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=97.64 E-value=0.0014 Score=61.84 Aligned_cols=133 Identities=23% Similarity=0.348 Sum_probs=83.3
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc-hhHHHHHHHHHHhCCCceEEE--cccC--------------------------
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS-SFQIEMIKYAKKTYPELDVIG--GNVV-------------------------- 298 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~-~~~~~~i~~l~~~~~~~~Vi~--g~V~-------------------------- 298 (505)
...+.++.+.++|.|++.+..+.|.. +.+.+.++.+|+.+ ++|++. ++..
T Consensus 29 ~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~-~lPvilfP~~~~~is~~aDavff~svLNS~n~~~i~ga 107 (240)
T COG1646 29 EADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERT-DLPVILFPGSPSGISPYADAVFFPSVLNSDNPYWIVGA 107 (240)
T ss_pred ccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhhc-CCCEEEecCChhccCccCCeEEEEEEecCCCcccccch
Confidence 35688899999999999998888876 67888899998765 777766 2211
Q ss_pred CHHHHHHHHHcCCC----EEEEccCCcceee-c--c------c--------------------ccccCcChHHHHHHHHH
Q 010640 299 TMYQAQNLIEAGVD----GLRVGMGSGSICT-T--Q------E--------------------VCAVGRGQATAVYKVSS 345 (505)
Q Consensus 299 t~e~a~~l~~aGad----~I~v~~g~g~~~~-~--~------~--------------------~~g~g~p~~~~l~~v~~ 345 (505)
..+.+..+...+-. +.++-+.++...+ + + + ..|.|.|.+.....+++
T Consensus 108 q~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~YlEagsga~~Pv~~e~v~~ 187 (240)
T COG1646 108 QVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVYLEAGSGAGDPVPVEMVSR 187 (240)
T ss_pred hhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEEEEEecCCCCCCcCHHHHHH
Confidence 01122222222211 1111111111110 0 0 0 13334444444555555
Q ss_pred HHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 346 IAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 346 ~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
.... .|+|..|||++++...+...+|||.+..|+.+
T Consensus 188 v~~~--~~LivGGGIrs~E~A~~~a~agAD~IVtG~ii 223 (240)
T COG1646 188 VLSD--TPLIVGGGIRSPEQAREMAEAGADTIVTGTII 223 (240)
T ss_pred hhcc--ceEEEcCCcCCHHHHHHHHHcCCCEEEECcee
Confidence 4433 59999999999999999989999999999976
No 262
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.62 E-value=0.00085 Score=63.00 Aligned_cols=120 Identities=18% Similarity=0.216 Sum_probs=74.1
Q ss_pred HHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeeccccccc
Q 010640 253 LEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAV 332 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~ 332 (505)
.+.+.+.|++.+++. .+.. .. ...+.......++..++.+.+++..+.+.|+|++.++. +..+....+.
T Consensus 66 ~~la~~~g~~GvHl~--~~~~--~~---~~~r~~~~~~~~ig~s~h~~~e~~~a~~~g~dyi~~~~----v~~t~~k~~~ 134 (196)
T TIGR00693 66 VDLALALGADGVHLG--QDDL--PA---SEARALLGPDKIIGVSTHNLEELAEAEAEGADYIGFGP----IFPTPTKKDP 134 (196)
T ss_pred HHHHHHcCCCEEecC--cccC--CH---HHHHHhcCCCCEEEEeCCCHHHHHHHhHcCCCEEEECC----ccCCCCCCCC
Confidence 455667788888762 2211 01 22233331222334478899999899999999998752 1111111110
Q ss_pred -CcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 333 -GRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 333 -g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
....+..+..+.+.. .++||++.||| +..++.+++.+||++|.+|+.+..+
T Consensus 135 ~~~~g~~~l~~~~~~~--~~~pv~a~GGI-~~~~~~~~~~~G~~gva~~~~i~~~ 186 (196)
T TIGR00693 135 APPAGVELLREIAATS--IDIPIVAIGGI-TLENAAEVLAAGADGVAVVSAIMQA 186 (196)
T ss_pred CCCCCHHHHHHHHHhc--CCCCEEEECCc-CHHHHHHHHHcCCCEEEEhHHhhCC
Confidence 011234444444332 14899999999 6999999999999999999998753
No 263
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.61 E-value=0.00065 Score=77.11 Aligned_cols=133 Identities=20% Similarity=0.222 Sum_probs=86.4
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCC------------------------chhHHHHHHHHHHhCC-CceEEEc-c------
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGN------------------------SSFQIEMIKYAKKTYP-ELDVIGG-N------ 296 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~------------------------~~~~~~~i~~l~~~~~-~~~Vi~g-~------ 296 (505)
+.+.++.+.++|.|.|.|+..+|+ .....+.++.+|+.++ +.||.++ +
T Consensus 553 f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~ 632 (765)
T PRK08255 553 FVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVE 632 (765)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccC
Confidence 344456677899999999875421 1345788888888873 5666653 1
Q ss_pred -cCCH----HHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHH
Q 010640 297 -VVTM----YQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALV 371 (505)
Q Consensus 297 -V~t~----e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~ 371 (505)
-.+. +.++.+.++|+|+|.|+.|..... .....+-+ .+.. .+.+..+..++|||+.|+|.++.++.+++.
T Consensus 633 ~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~-~~~~~~~~-~~~~---~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~ 707 (765)
T PRK08255 633 GGNTPDDAVEIARAFKAAGADLIDVSSGQVSKD-EKPVYGRM-YQTP---FADRIRNEAGIATIAVGAISEADHVNSIIA 707 (765)
T ss_pred CCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcC-CCCCcCcc-ccHH---HHHHHHHHcCCEEEEeCCCCCHHHHHHHHH
Confidence 1123 455778889999999974321100 00000001 0111 122333345799999999999999999999
Q ss_pred hC-CCEEEecccccCC
Q 010640 372 LG-ASTVMMGSFLAGS 386 (505)
Q Consensus 372 lG-A~~V~~G~~f~~~ 386 (505)
-| ||+|++|+.|+.-
T Consensus 708 ~g~~D~v~~gR~~l~d 723 (765)
T PRK08255 708 AGRADLCALARPHLAD 723 (765)
T ss_pred cCCcceeeEcHHHHhC
Confidence 77 9999999999864
No 264
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=97.61 E-value=0.0029 Score=60.59 Aligned_cols=123 Identities=17% Similarity=0.138 Sum_probs=80.1
Q ss_pred HHHHHHHHHHcCccEEEEeCC-----CCCchhHHHHHHHHHHhCCCc--eEEE-cccCCHHH----HHHHHHcCCCEEEE
Q 010640 249 DKERLEHLVKAGVNVVVLDSS-----QGNSSFQIEMIKYAKKTYPEL--DVIG-GNVVTMYQ----AQNLIEAGVDGLRV 316 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~-----~g~~~~~~~~i~~l~~~~~~~--~Vi~-g~V~t~e~----a~~l~~aGad~I~v 316 (505)
-...++.+++.|++-+.+... .|+...+.+.++.+++...+. .||. ....+.++ .+.+.++|+|+|..
T Consensus 76 K~~e~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKT 155 (221)
T PRK00507 76 KAFEAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKT 155 (221)
T ss_pred HHHHHHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEc
Confidence 445667778889888765432 244556777777777764332 3333 22234333 35577799999987
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccc
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSF 382 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~ 382 (505)
+.|-+ .+..++..+...++... .+++|.++|||++..|+...+.+||+-++..+.
T Consensus 156 sTG~~----------~~gat~~~v~~m~~~~~-~~~~IKasGGIrt~~~a~~~i~aGA~riGtS~~ 210 (221)
T PRK00507 156 STGFS----------TGGATVEDVKLMRETVG-PRVGVKASGGIRTLEDALAMIEAGATRLGTSAG 210 (221)
T ss_pred CCCCC----------CCCCCHHHHHHHHHHhC-CCceEEeeCCcCCHHHHHHHHHcCcceEccCcH
Confidence 64311 11244555555555443 359999999999999999999999998776544
No 265
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.60 E-value=0.001 Score=68.44 Aligned_cols=130 Identities=19% Similarity=0.266 Sum_probs=85.8
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC------------------------chhHHHHHHHHHHhC-CCceEEEc-cc----
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN------------------------SSFQIEMIKYAKKTY-PELDVIGG-NV---- 297 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~------------------------~~~~~~~i~~l~~~~-~~~~Vi~g-~V---- 297 (505)
++.+.+..+.++|.|.|.||.++|+ ..-..+.++.+|+.+ ++.||.++ +.
T Consensus 145 ~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~ 224 (361)
T cd04747 145 AFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQ 224 (361)
T ss_pred HHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECccccc
Confidence 3556677788899999999976521 134578888889887 45677652 10
Q ss_pred -------CCHHH----HHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCC------
Q 010640 298 -------VTMYQ----AQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGI------ 360 (505)
Q Consensus 298 -------~t~e~----a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI------ 360 (505)
.+.++ ++.+.++|+|+|.++.+. .+ .....++. .... ....+..++||++.|||
T Consensus 225 ~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~--~~-~~~~~~~~---~~~~---~~~k~~~~~pv~~~G~i~~~~~~ 295 (361)
T cd04747 225 DYTARLADTPDELEALLAPLVDAGVDIFHCSTRR--FW-EPEFEGSE---LNLA---GWTKKLTGLPTITVGSVGLDGDF 295 (361)
T ss_pred ccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCC--cc-CCCcCccc---hhHH---HHHHHHcCCCEEEECCccccccc
Confidence 23333 344578999999886431 11 11111211 1111 22223357999999999
Q ss_pred ------------CCHHHHHHHHHhC-CCEEEecccccCC
Q 010640 361 ------------SNSGHIVKALVLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 361 ------------~~~~di~kal~lG-A~~V~~G~~f~~~ 386 (505)
.++.++.+++.-| ||+|++|+.|+.-
T Consensus 296 ~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iad 334 (361)
T cd04747 296 IGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSD 334 (361)
T ss_pred ccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHhC
Confidence 5999999999977 9999999998753
No 266
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=97.59 E-value=0.0036 Score=60.62 Aligned_cols=119 Identities=21% Similarity=0.219 Sum_probs=77.0
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCC--chhHHHHHHHHHHhC--CCceEEEcccC----------CHHH----HHHHHHcC
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGN--SSFQIEMIKYAKKTY--PELDVIGGNVV----------TMYQ----AQNLIEAG 310 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~--~~~~~~~i~~l~~~~--~~~~Vi~g~V~----------t~e~----a~~l~~aG 310 (505)
....++.+++.|++.+.+....+. .....+.++.+++.. .++++++ ++. +.+. ++.+.++|
T Consensus 78 ~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~ii-e~~~~g~~~~~~~~~~~i~~~~~~a~~~G 156 (235)
T cd00958 78 LVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIA-WMYPRGPAVKNEKDPDLIAYAARIGAELG 156 (235)
T ss_pred hhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEE-EEeccCCcccCccCHHHHHHHHHHHHHHC
Confidence 445578888999998865544332 233444555555422 1678877 331 2232 55588899
Q ss_pred CCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCC--CCHHH----HHHHHHhCCCEEEeccccc
Q 010640 311 VDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGI--SNSGH----IVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 311 ad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI--~~~~d----i~kal~lGA~~V~~G~~f~ 384 (505)
+|+|.+... +.++.+.++ ++...+||+++||+ .+..| +..++.+||++|.+|+.+.
T Consensus 157 aD~Ik~~~~---------------~~~~~~~~i---~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~ 218 (235)
T cd00958 157 ADIVKTKYT---------------GDAESFKEV---VEGCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIF 218 (235)
T ss_pred CCEEEecCC---------------CCHHHHHHH---HhcCCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhh
Confidence 999976410 123334333 33456899999987 56665 8888999999999999886
Q ss_pred CC
Q 010640 385 GS 386 (505)
Q Consensus 385 ~~ 386 (505)
.+
T Consensus 219 ~~ 220 (235)
T cd00958 219 QR 220 (235)
T ss_pred cC
Confidence 43
No 267
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=97.58 E-value=0.001 Score=70.35 Aligned_cols=122 Identities=25% Similarity=0.400 Sum_probs=81.5
Q ss_pred HHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEc--ccCC-HHHHHHHHHcCCCEEEEccCCcceeecc
Q 010640 251 ERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG--NVVT-MYQAQNLIEAGVDGLRVGMGSGSICTTQ 327 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g--~V~t-~e~a~~l~~aGad~I~v~~g~g~~~~~~ 327 (505)
..++.+.++|++.++++.... .....+.++.+++. +.+++.+ +..+ .+.++.+.+.|+|+|.+.. |. +.
T Consensus 72 ~~v~~a~~aGAdgV~v~g~~~-~~~~~~~i~~a~~~--G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~p--g~---~~ 143 (430)
T PRK07028 72 IEVEMAAKAGADIVCILGLAD-DSTIEDAVRAARKY--GVRLMADLINVPDPVKRAVELEELGVDYINVHV--GI---DQ 143 (430)
T ss_pred HHHHHHHHcCCCEEEEecCCC-hHHHHHHHHHHHHc--CCEEEEEecCCCCHHHHHHHHHhcCCCEEEEEe--cc---ch
Confidence 478889999999998764321 11234556666664 6777764 4433 5667888899999996642 11 11
Q ss_pred cccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
.. .+...+..+. +.....++||++.||| +...+..++.+||+++.+|+.+...
T Consensus 144 ~~--~~~~~~~~l~---~l~~~~~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~ 196 (430)
T PRK07028 144 QM--LGKDPLELLK---EVSEEVSIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIKS 196 (430)
T ss_pred hh--cCCChHHHHH---HHHhhCCCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcCC
Confidence 11 1111233333 3333456999999999 7899999999999999999998653
No 268
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=97.57 E-value=0.0011 Score=68.61 Aligned_cols=134 Identities=15% Similarity=0.147 Sum_probs=84.9
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC------------------------chhHHHHHHHHHHhC-CCceEEEc----c--
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN------------------------SSFQIEMIKYAKKTY-PELDVIGG----N-- 296 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~------------------------~~~~~~~i~~l~~~~-~~~~Vi~g----~-- 296 (505)
++.+.++.+.++|.|.|.||..+|+ .....+.++.+|+.+ ++.+|.+. +
T Consensus 151 ~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~ 230 (370)
T cd02929 151 WYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELI 230 (370)
T ss_pred HHHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhc
Confidence 3556677888899999999876531 134578888899887 35566552 1
Q ss_pred ----cCCHHHH----HHHHHcCCCEEEEccCCcce-eecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHH
Q 010640 297 ----VVTMYQA----QNLIEAGVDGLRVGMGSGSI-CTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIV 367 (505)
Q Consensus 297 ----V~t~e~a----~~l~~aGad~I~v~~g~g~~-~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~ 367 (505)
..+.+++ +.+.+ .+|++.++.|.-.. .........+. ... .+.+..+..++|||+.|||.++.++.
T Consensus 231 ~~~g~~~~~e~~~~~~~l~~-~~D~i~vs~g~~~~~~~~~~~~~~~~-~~~---~~~~ik~~~~~pvi~~G~i~~~~~~~ 305 (370)
T cd02929 231 GPGGIESEGEGVEFVEMLDE-LPDLWDVNVGDWANDGEDSRFYPEGH-QEP---YIKFVKQVTSKPVVGVGRFTSPDKMV 305 (370)
T ss_pred CCCCCCCHHHHHHHHHHHHh-hCCEEEecCCCccccccccccCCccc-cHH---HHHHHHHHCCCCEEEeCCCCCHHHHH
Confidence 0134433 44443 48999987542110 00000100010 112 22233334679999999999999999
Q ss_pred HHHHhC-CCEEEecccccCC
Q 010640 368 KALVLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 368 kal~lG-A~~V~~G~~f~~~ 386 (505)
+++..| ||+|++|++|+.-
T Consensus 306 ~~l~~g~~D~V~~gR~~lad 325 (370)
T cd02929 306 EVVKSGILDLIGAARPSIAD 325 (370)
T ss_pred HHHHcCCCCeeeechHhhhC
Confidence 999988 9999999999864
No 269
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=97.57 E-value=0.0052 Score=60.41 Aligned_cols=125 Identities=16% Similarity=0.155 Sum_probs=77.5
Q ss_pred HHHHHHHHHHcCccEEEEeC-CCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEE-cc-CCcceee
Q 010640 249 DKERLEHLVKAGVNVVVLDS-SQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRV-GM-GSGSICT 325 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~-~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v-~~-g~g~~~~ 325 (505)
....++.+.++|+|.+.+.. +. +...+..+.+++.--....++...++.+..+.+.+..-.+|.+ +. |-++..
T Consensus 108 ~e~F~~~~~~aGvdgviipDLP~---ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~- 183 (263)
T CHL00200 108 INKFIKKISQAGVKGLIIPDLPY---EESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLK- 183 (263)
T ss_pred HHHHHHHHHHcCCeEEEecCCCH---HHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCC-
Confidence 44678888999999998733 32 2334555555554211122334445677777777765546654 42 211111
Q ss_pred cccccccCcChHHHHHHHH-HHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 326 TQEVCAVGRGQATAVYKVS-SIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~-~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
. .....+.+.. +..+..+.||...+||.+++++.++...|||+|.+||+|+.
T Consensus 184 ----~----~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~ 236 (263)
T CHL00200 184 ----T----ELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQ 236 (263)
T ss_pred ----c----cccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 0 0111122222 22224579999999999999999999999999999999963
No 270
>PLN02591 tryptophan synthase
Probab=97.56 E-value=0.0046 Score=60.28 Aligned_cols=161 Identities=16% Similarity=0.160 Sum_probs=96.7
Q ss_pred EecCCCCHHHHHHHHHHCCC-CeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHH
Q 010640 178 SVPANYDLGQIDEVLEKNDV-DFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHL 256 (505)
Q Consensus 178 ~v~~~~~l~~a~~~l~~~~i-~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~l 256 (505)
.+..+.++.++++++.+.+- ..+|++ +.|..+.+... -..+.++.+
T Consensus 56 AL~~G~~~~~~~~~~~~~r~~~~~p~i-------lm~Y~N~i~~~--------------------------G~~~F~~~~ 102 (250)
T PLN02591 56 ALEKGTTLDSVISMLKEVAPQLSCPIV-------LFTYYNPILKR--------------------------GIDKFMATI 102 (250)
T ss_pred HHHcCCCHHHHHHHHHHHhcCCCCCEE-------EEecccHHHHh--------------------------HHHHHHHHH
Confidence 45667788888888887432 123432 33443333211 144678888
Q ss_pred HHcCccEEEE-eCCCCCchhHHHHHHHHHHhCCCceE--EEcccCCHHHHHHHHHcCCCEEEE-cc-CCcceeecccccc
Q 010640 257 VKAGVNVVVL-DSSQGNSSFQIEMIKYAKKTYPELDV--IGGNVVTMYQAQNLIEAGVDGLRV-GM-GSGSICTTQEVCA 331 (505)
Q Consensus 257 ieaGad~I~i-~~~~g~~~~~~~~i~~l~~~~~~~~V--i~g~V~t~e~a~~l~~aGad~I~v-~~-g~g~~~~~~~~~g 331 (505)
.++|++.+.+ |.+. +...+..+..++. ++.. ++..-.+.+..+.+.+..-.+|.+ +. |-++.. .+
T Consensus 103 ~~aGv~GviipDLP~---ee~~~~~~~~~~~--gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~-----~~ 172 (250)
T PLN02591 103 KEAGVHGLVVPDLPL---EETEALRAEAAKN--GIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGAR-----AS 172 (250)
T ss_pred HHcCCCEEEeCCCCH---HHHHHHHHHHHHc--CCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCC-----cC
Confidence 9999999877 3322 2334444445454 4433 233444566777777777777765 42 211111 01
Q ss_pred cCcChHH-HHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 332 VGRGQAT-AVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 332 ~g~p~~~-~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
+. +.+. .+..+++ ..++||+..-||.+++|+.+++.+|||+|.+||.|..
T Consensus 173 ~~-~~~~~~i~~vk~---~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk 223 (250)
T PLN02591 173 VS-GRVESLLQELKE---VTDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVK 223 (250)
T ss_pred Cc-hhHHHHHHHHHh---cCCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 11 1122 2333333 3579999977999999999999999999999999863
No 271
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=97.55 E-value=0.0015 Score=67.32 Aligned_cols=127 Identities=14% Similarity=0.111 Sum_probs=84.0
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC-------------------c-----hhHHHHHHHHHHhCCCceEEEc----c---
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN-------------------S-----SFQIEMIKYAKKTYPELDVIGG----N--- 296 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~-------------------~-----~~~~~~i~~l~~~~~~~~Vi~g----~--- 296 (505)
++.+.++.+.++|.|.|+||.++|+ + +-.++.++.+|+.++.-.|.+. +
T Consensus 160 ~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~ 239 (362)
T PRK10605 160 DFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFN 239 (362)
T ss_pred HHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccc
Confidence 3566677888999999999875532 1 3457888888888743234331 0
Q ss_pred -c---CCHHH-----HHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHH
Q 010640 297 -V---VTMYQ-----AQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIV 367 (505)
Q Consensus 297 -V---~t~e~-----a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~ 367 (505)
. .+.++ ++.|.+.|+|+|.|+.+. .. .+...+ .....+..+..++||++.|++ ++..+.
T Consensus 240 ~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~--~~-----~~~~~~----~~~~~~ik~~~~~pv~~~G~~-~~~~ae 307 (362)
T PRK10605 240 NVDNGPNEEADALYLIEQLGKRGIAYLHMSEPD--WA-----GGEPYS----DAFREKVRARFHGVIIGAGAY-TAEKAE 307 (362)
T ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCEEEecccc--cc-----CCcccc----HHHHHHHHHHCCCCEEEeCCC-CHHHHH
Confidence 1 23333 567778899999997421 10 011111 111123333457899999886 999999
Q ss_pred HHHHhC-CCEEEecccccCC
Q 010640 368 KALVLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 368 kal~lG-A~~V~~G~~f~~~ 386 (505)
+++.-| ||+|.+|++|+.-
T Consensus 308 ~~i~~G~~D~V~~gR~~iad 327 (362)
T PRK10605 308 TLIGKGLIDAVAFGRDYIAN 327 (362)
T ss_pred HHHHcCCCCEEEECHHhhhC
Confidence 999998 9999999999864
No 272
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.53 E-value=0.0021 Score=60.31 Aligned_cols=121 Identities=25% Similarity=0.281 Sum_probs=83.7
Q ss_pred cceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEE
Q 010640 236 KWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 236 ~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~ 315 (505)
++.+|+..-. ..+.++.++++|+++++- .+.. .+.++..++. +++.+. ++.|+.++..+.++|++.++
T Consensus 55 ~~~vGAGTVl---~~e~a~~ai~aGA~FivS---P~~~---~~vi~~a~~~--~i~~iP-G~~TptEi~~A~~~Ga~~vK 122 (201)
T PRK06015 55 EAIVGAGTIL---NAKQFEDAAKAGSRFIVS---PGTT---QELLAAANDS--DVPLLP-GAATPSEVMALREEGYTVLK 122 (201)
T ss_pred CCEEeeEeCc---CHHHHHHHHHcCCCEEEC---CCCC---HHHHHHHHHc--CCCEeC-CCCCHHHHHHHHHCCCCEEE
Confidence 4677776432 457788999999999963 3322 3555555655 788776 68999999999999999998
Q ss_pred EccCCcceeeccccccc-CcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 316 VGMGSGSICTTQEVCAV-GRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~-g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+=- ..-. |...+.++ +.-. -++|+++.|||.- .++...|++|+.++..|+.+.
T Consensus 123 ~FP----------a~~~GG~~yikal---~~pl--p~~~l~ptGGV~~-~n~~~~l~ag~~~~~ggs~l~ 176 (201)
T PRK06015 123 FFP----------AEQAGGAAFLKAL---SSPL--AGTFFCPTGGISL-KNARDYLSLPNVVCVGGSWVA 176 (201)
T ss_pred ECC----------chhhCCHHHHHHH---HhhC--CCCcEEecCCCCH-HHHHHHHhCCCeEEEEchhhC
Confidence 720 0001 11222222 2222 2599999999855 799999999988888888764
No 273
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.53 E-value=0.00091 Score=64.22 Aligned_cols=128 Identities=23% Similarity=0.393 Sum_probs=78.7
Q ss_pred HHHHHHHHcCccEEEEeCCCCCc-hhHHHHHHHHHHhCCCceEEE--cccC------------------C--------HH
Q 010640 251 ERLEHLVKAGVNVVVLDSSQGNS-SFQIEMIKYAKKTYPELDVIG--GNVV------------------T--------MY 301 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~~g~~-~~~~~~i~~l~~~~~~~~Vi~--g~V~------------------t--------~e 301 (505)
+.++.+.+.|.|++.+..+.|.. ..+.+.++.+|+ + ++|++. |+.. + .+
T Consensus 23 ~~~~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~-~-~lPvilfp~~~~~i~~~aDa~l~~svlNs~~~~~iig~~~~ 100 (232)
T PRK04169 23 EALEAICESGTDAIIVGGSDGVTEENVDELVKAIKE-Y-DLPVILFPGNIEGISPGADAYLFPSVLNSRNPYWIIGAHVE 100 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCCccchHHHHHHHHHHhc-C-CCCEEEeCCCccccCcCCCEEEEEEEecCCCcchHhhHHHH
Confidence 44577889999999998888765 466778888888 5 677765 3221 0 11
Q ss_pred HHHHHHHcCCC-----EEEEccCCcce---eeccc--------------------------ccccC--c-ChHHHHHHHH
Q 010640 302 QAQNLIEAGVD-----GLRVGMGSGSI---CTTQE--------------------------VCAVG--R-GQATAVYKVS 344 (505)
Q Consensus 302 ~a~~l~~aGad-----~I~v~~g~g~~---~~~~~--------------------------~~g~g--~-p~~~~l~~v~ 344 (505)
.+..+...|-. ++++. .++.. ..+.. ..+.+ . +..+.+..++
T Consensus 101 ~~~~~~~~~le~ip~gYiv~~-~~~~va~~~~~~~~~~~~~~~~~~~~lA~~~~g~~~vYle~gs~~g~~~~~e~I~~v~ 179 (232)
T PRK04169 101 AAPIIKKGGLEVIPEGYIVLN-PGSKVAVVGTAAPIPLDKPDIAAYAALAAEYLGMPIVYLEYGGGAGDPVPPEMVKAVK 179 (232)
T ss_pred HHHHHhhcCcEECceEEEEEC-CCCeeeeeeccccCCCChHHHHHHHHHHHHHcCCCeEEEECCCCCCCCCCHHHHHHHH
Confidence 22223222332 22222 11111 11100 11122 2 2244554444
Q ss_pred HHHhhcCC-cEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 345 SIAAQSGV-PVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 345 ~~~~~~~i-pvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+ ..+. |++..|||++.+++.+++.+|||+|.+|+.|.
T Consensus 180 ~---~~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~ 217 (232)
T PRK04169 180 K---ALDITPLIYGGGIRSPEQARELMAAGADTIVVGNIIE 217 (232)
T ss_pred H---hcCCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHh
Confidence 4 3456 99999999999999999999999999999985
No 274
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=97.52 E-value=0.0016 Score=64.33 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=76.8
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCC--chhHHHHHHHHHHhC--CCceEEEc---------ccCCHHH----HHHHHHcCC
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGN--SSFQIEMIKYAKKTY--PELDVIGG---------NVVTMYQ----AQNLIEAGV 311 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~--~~~~~~~i~~l~~~~--~~~~Vi~g---------~V~t~e~----a~~l~~aGa 311 (505)
....++.+++.|++.+.+....+. .....+.++.+++.+ .++|+++- +..+.+. ++.+.++|+
T Consensus 95 ~~~~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GA 174 (267)
T PRK07226 95 LVGTVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGA 174 (267)
T ss_pred eeecHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCC
Confidence 345577889999998877654432 234555555555443 16676551 1123333 577788999
Q ss_pred CEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCC--CHHHHHHH----HHhCCCEEEecccccC
Q 010640 312 DGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGIS--NSGHIVKA----LVLGASTVMMGSFLAG 385 (505)
Q Consensus 312 d~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~--~~~di~ka----l~lGA~~V~~G~~f~~ 385 (505)
|+|+.+.. +.+..+.++. +..++||+++|||. |..++.+. +.+||+++.+|+.+..
T Consensus 175 D~vKt~~~---------------~~~~~l~~~~---~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~ 236 (267)
T PRK07226 175 DIVKTNYT---------------GDPESFREVV---EGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQ 236 (267)
T ss_pred CEEeeCCC---------------CCHHHHHHHH---HhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhc
Confidence 99977521 1234444433 33469999999999 66655555 5999999999998764
No 275
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=97.52 E-value=0.0019 Score=61.18 Aligned_cols=119 Identities=18% Similarity=0.191 Sum_probs=80.5
Q ss_pred HHHHHHHHHHcCccEEEEeCCCC-----CchhHHHHHHHHHHhCCCceEEE---cccCCHH----HHHHHHHcCCCEEEE
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQG-----NSSFQIEMIKYAKKTYPELDVIG---GNVVTMY----QAQNLIEAGVDGLRV 316 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g-----~~~~~~~~i~~l~~~~~~~~Vi~---g~V~t~e----~a~~l~~aGad~I~v 316 (505)
....++.+++.|+|.+.+....| +...+.+.+..+++...+.|+.+ ....+.+ .++.+.++|+|+|+.
T Consensus 71 k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKT 150 (203)
T cd00959 71 KVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKT 150 (203)
T ss_pred HHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEc
Confidence 44557788889999998765443 33557788888888765555433 2223433 357788899999988
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
+.|-+. +..++..+...++..+ .++||-++|||++..++.+.+.+||+-.+
T Consensus 151 sTG~~~----------~~at~~~v~~~~~~~~-~~v~ik~aGGikt~~~~l~~~~~g~~riG 201 (203)
T cd00959 151 STGFGP----------GGATVEDVKLMKEAVG-GRVGVKAAGGIRTLEDALAMIEAGATRIG 201 (203)
T ss_pred CCCCCC----------CCCCHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHhChhhcc
Confidence 743210 1133444444445444 56999999999999999999999997543
No 276
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=97.51 E-value=0.00093 Score=67.50 Aligned_cols=188 Identities=13% Similarity=0.180 Sum_probs=118.6
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccc----cccccccccccCCC
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSD----NKVKIFDYMRDCSS 175 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~----~~~~v~~im~~~~~ 175 (505)
-++++|+.++ ++.+.+.+++++.+++++ +. +||+|+ +|+++-+|++.||....+ ....-.++|.. .
T Consensus 172 ~~~~vmt~~~--~~~~~gi~l~~~neiL~~~kkGkl~iv~~---~gelva~~~rtDl~k~~~yPlask~~~kqll~g--A 244 (503)
T KOG2550|consen 172 LVSDVMTKNP--VTGAQGITLKEANEILKKIKKGKLPVVDD---KGELVAMLSRTDLMKNRDYPLASKDSTKQLLCG--A 244 (503)
T ss_pred hhhhhccccc--ccccccccHHHHHHHHHhhhcCCcceecc---CCceeeeeehhhhhhhcCCCccccCcccceeee--e
Confidence 4556888888 999999999999999988 44 999998 999999999999963321 11122233322 1
Q ss_pred ceEecCCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhhhhcCCCCCCCccCCCCcce-EEEeecCCccHHHH
Q 010640 176 NVSVPANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVERLKGYPNLGKGTVGPDGKWM-VGAAIGTRESDKER 252 (505)
Q Consensus 176 ~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~-v~a~i~~~~~~~e~ 252 (505)
.+.-.+.-.+-++++.+.+++. .|+|. |.-+=-| ..++.... .=+.+. ++.++. ..+.
T Consensus 245 --aiGTre~dK~rl~ll~~aGvdv-viLDSSqGnS~~qi---emik~iK~---------~yP~l~ViaGNVV----T~~q 305 (503)
T KOG2550|consen 245 --AIGTRDDDKERLDLLVQAGVDV-VILDSSQGNSIYQL---EMIKYIKE---------TYPDLQIIAGNVV----TKEQ 305 (503)
T ss_pred --ccccccchhHHHHHhhhcCCcE-EEEecCCCcchhHH---HHHHHHHh---------hCCCceeecccee----eHHH
Confidence 1222333456677888888874 45554 4321111 11121111 111222 333332 4578
Q ss_pred HHHHHHcCccEEEEeC------------CCCCch-hHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 253 LEHLVKAGVNVVVLDS------------SQGNSS-FQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 253 ~~~lieaGad~I~i~~------------~~g~~~-~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
++.|+.+|+|.+-+.. +.|.+. ...-.+.+....+ ++|+|+ |++.+..+..++..+|++.+..+
T Consensus 306 a~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~-gvpviADGGiq~~Ghi~KAl~lGAstVMmG 383 (503)
T KOG2550|consen 306 AANLIAAGADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQF-GVPCIADGGIQNVGHVVKALGLGASTVMMG 383 (503)
T ss_pred HHHHHHccCceeEeccccCceeeeceeeeccCCcccchhhHHHHHHhc-CCceeecCCcCccchhHhhhhcCchhheec
Confidence 8999999999987754 223331 1222333344454 899999 78888888889999999988875
No 277
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.50 E-value=0.0012 Score=67.36 Aligned_cols=118 Identities=19% Similarity=0.238 Sum_probs=73.0
Q ss_pred HHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeeccccccc
Q 010640 253 LEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAV 332 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~ 332 (505)
.+.+.+.++|.+++.- ... . +...++....-.++..++.+.+++..+.+.|+|+|.+|- +..+....+.
T Consensus 210 vdlAl~~~aDGVHLgq--~dl--~---~~~aR~llg~~~iIG~S~Hs~~e~~~A~~~GaDYI~lGP----vf~T~tKp~~ 278 (347)
T PRK02615 210 VDIALAVDADGVHLGQ--EDL--P---LAVARQLLGPEKIIGRSTTNPEEMAKAIAEGADYIGVGP----VFPTPTKPGK 278 (347)
T ss_pred HHHHHHcCCCEEEeCh--hhc--C---HHHHHHhcCCCCEEEEecCCHHHHHHHHHcCCCEEEECC----CcCCCCCCCC
Confidence 4445566777776621 110 0 222344331223444477899999999999999998761 1111111111
Q ss_pred CcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 333 GRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 333 g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
....+..+..+ +....+|+++-||| +..++.+.+.+||++|.+++.+..
T Consensus 279 ~~~Gle~l~~~---~~~~~iPv~AiGGI-~~~ni~~l~~~Ga~gVAvisaI~~ 327 (347)
T PRK02615 279 APAGLEYLKYA---AKEAPIPWFAIGGI-DKSNIPEVLQAGAKRVAVVRAIMG 327 (347)
T ss_pred CCCCHHHHHHH---HHhCCCCEEEECCC-CHHHHHHHHHcCCcEEEEeHHHhC
Confidence 11123333333 33457999999999 589999999999999999998864
No 278
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.48 E-value=0.0066 Score=59.53 Aligned_cols=123 Identities=20% Similarity=0.197 Sum_probs=79.5
Q ss_pred HHHHHHHHHHcCccEEEE-eCCCCCchhHHHHHHHHHHhCCCceE--EEcccCCHHHHHHHHHcCCCEEEE-c-cCCcce
Q 010640 249 DKERLEHLVKAGVNVVVL-DSSQGNSSFQIEMIKYAKKTYPELDV--IGGNVVTMYQAQNLIEAGVDGLRV-G-MGSGSI 323 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i-~~~~g~~~~~~~~i~~l~~~~~~~~V--i~g~V~t~e~a~~l~~aGad~I~v-~-~g~g~~ 323 (505)
..+.++.+.++|++.+.+ |.+. ....+.+..+++. ++.. ++..-.+.+..+.+.+...++|.+ + .|-++.
T Consensus 106 ~e~f~~~~~~aGvdGviipDLp~---ee~~~~~~~~~~~--gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~GvTG~ 180 (258)
T PRK13111 106 VERFAADAAEAGVDGLIIPDLPP---EEAEELRAAAKKH--GLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGVTGA 180 (258)
T ss_pred HHHHHHHHHHcCCcEEEECCCCH---HHHHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCc
Confidence 446788899999999877 2221 2334455555554 3322 244555678888888888888865 4 221211
Q ss_pred eecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 324 CTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 324 ~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
. .+...+....+..+++ ..++||+..+||.++.++.+++.. ||+|.+||.|..
T Consensus 181 ~-----~~~~~~~~~~i~~vk~---~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~ 233 (258)
T PRK13111 181 R-----SADAADLAELVARLKA---HTDLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALVK 233 (258)
T ss_pred c-----cCCCccHHHHHHHHHh---cCCCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHHH
Confidence 1 1111122234444444 347999999999999999999986 999999999964
No 279
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.47 E-value=0.0024 Score=60.00 Aligned_cols=87 Identities=23% Similarity=0.269 Sum_probs=61.9
Q ss_pred ceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHH
Q 010640 290 LDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKA 369 (505)
Q Consensus 290 ~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~ka 369 (505)
-.|+.=.-.++-.+++|.++||.++.=... ..-.|.|+-+...+..+.+ +.++|||.|-||.++.|.+.|
T Consensus 131 F~VlPY~~dD~v~arrLee~GcaavMPl~a-------PIGSg~G~~n~~~l~iiie---~a~VPviVDAGiG~pSdAa~a 200 (262)
T COG2022 131 FVVLPYTTDDPVLARRLEEAGCAAVMPLGA-------PIGSGLGLQNPYNLEIIIE---EADVPVIVDAGIGTPSDAAQA 200 (262)
T ss_pred CEEeeccCCCHHHHHHHHhcCceEeccccc-------cccCCcCcCCHHHHHHHHH---hCCCCEEEeCCCCChhHHHHH
Confidence 334433345778899999999998853211 1112234444444544444 347999999999999999999
Q ss_pred HHhCCCEEEecccccCC
Q 010640 370 LVLGASTVMMGSFLAGS 386 (505)
Q Consensus 370 l~lGA~~V~~G~~f~~~ 386 (505)
+.+|+|+|.+-|+.+.+
T Consensus 201 MElG~DaVL~NTAiA~A 217 (262)
T COG2022 201 MELGADAVLLNTAIARA 217 (262)
T ss_pred HhcccceeehhhHhhcc
Confidence 99999999999998754
No 280
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=97.47 E-value=0.00032 Score=68.45 Aligned_cols=167 Identities=17% Similarity=0.161 Sum_probs=101.3
Q ss_pred HHHHHHHHHcC--ccEEEEeCCCCCchh---------HHHHHHHHHHh---C---CCceEEEcccCC------HHHHHHH
Q 010640 250 KERLEHLVKAG--VNVVVLDSSQGNSSF---------QIEMIKYAKKT---Y---PELDVIGGNVVT------MYQAQNL 306 (505)
Q Consensus 250 ~e~~~~lieaG--ad~I~i~~~~g~~~~---------~~~~i~~l~~~---~---~~~~Vi~g~V~t------~e~a~~l 306 (505)
.+.++-....| +|+++++.+..+..+ ..+.+...... . ...|+.++-..+ -+-+...
T Consensus 196 ~dy~~gV~~~g~~adylviNvSsPNtpGlr~lq~k~~L~~ll~~v~~a~~~~~~~~~~pvl~kiapDL~~~el~dia~v~ 275 (398)
T KOG1436|consen 196 LDYVEGVRVFGPFADYLVINVSSPNTPGLRSLQKKSDLRKLLTKVVQARDKLPLGKKPPVLVKIAPDLSEKELKDIALVV 275 (398)
T ss_pred HHHHHHhhhcccccceEEEeccCCCCcchhhhhhHHHHHHHHHHHHHHHhccccCCCCceEEEeccchhHHHHHHHHHHH
Confidence 33444333333 788888876654321 12222222221 1 133666653321 1234445
Q ss_pred HHcCCCEEEEccCCcc-------eeecccccccCcChHH--HHHHHHHHHhh--cCCcEEecCCCCCHHHHHHHHHhCCC
Q 010640 307 IEAGVDGLRVGMGSGS-------ICTTQEVCAVGRGQAT--AVYKVSSIAAQ--SGVPVIADGGISNSGHIVKALVLGAS 375 (505)
Q Consensus 307 ~~aGad~I~v~~g~g~-------~~~~~~~~g~g~p~~~--~l~~v~~~~~~--~~ipvIa~GGI~~~~di~kal~lGA~ 375 (505)
.+++.|.+++++---+ .....+..|.+.|.+. ++..+++...- -+||||..|||.++.|..+-+.+||+
T Consensus 276 kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraGAS 355 (398)
T KOG1436|consen 276 KKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAGAS 355 (398)
T ss_pred HHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCCCceEeecCccccHhHHHHHhcCch
Confidence 6789999988742110 0011123444444333 23333333222 25999999999999999999999999
Q ss_pred EEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHH
Q 010640 376 TVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAV 455 (505)
Q Consensus 376 ~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l 455 (505)
.||++|.|.. +|+ .+++++..+|
T Consensus 356 lvQlyTal~y----------------------------------------------eGp-----------~i~~kIk~El 378 (398)
T KOG1436|consen 356 LVQLYTALVY----------------------------------------------EGP-----------AIIEKIKREL 378 (398)
T ss_pred HHHHHHHHhh----------------------------------------------cCc-----------hhHHHHHHHH
Confidence 9999998831 221 5778899999
Q ss_pred HHHhhccCCCCHHHHHHh
Q 010640 456 KQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 456 ~~~m~~~G~~~~~~l~~~ 473 (505)
...|.-.|..++.++..+
T Consensus 379 ~~ll~~kG~t~v~d~iG~ 396 (398)
T KOG1436|consen 379 SALLKAKGFTSVDDAIGK 396 (398)
T ss_pred HHHHHhcCCCcHHHhccC
Confidence 999999999999988654
No 281
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.47 E-value=0.00075 Score=55.42 Aligned_cols=75 Identities=15% Similarity=0.168 Sum_probs=57.8
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHH
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERL 253 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~ 253 (505)
+++++.+++++.++++.|.+.++..+||+|+ |+++|++|.+|++..... . .+.......+.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~---------------~--~v~~~~~l~~a~ 64 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKSEV---------------V--TATKRTTVSECA 64 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCCCc---------------E--EecCCCCHHHHH
Confidence 5778899999999999999999999999998 999999999999875321 1 121223345666
Q ss_pred HHHHHcCccEEEE
Q 010640 254 EHLVKAGVNVVVL 266 (505)
Q Consensus 254 ~~lieaGad~I~i 266 (505)
+.+.+.+...+.+
T Consensus 65 ~~m~~~~~~~lpV 77 (96)
T cd04614 65 QKMKRNRIEQIPI 77 (96)
T ss_pred HHHHHhCCCeeeE
Confidence 7777778876654
No 282
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=97.44 E-value=0.0043 Score=59.41 Aligned_cols=128 Identities=14% Similarity=0.182 Sum_probs=82.0
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEE-ccCCcceeec
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRV-GMGSGSICTT 326 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v-~~g~g~~~~~ 326 (505)
+....++.+.++|++.+.+|.... ....+.++.+|+.--..-+....-+..+....+.. -+|.+.+ +..+|....
T Consensus 69 ~p~~~i~~~~~~gad~i~~H~Ea~--~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~-~~D~vlvMtV~PGfgGq- 144 (220)
T PRK08883 69 PVDRIIPDFAKAGASMITFHVEAS--EHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMD-KVDLILLMSVNPGFGGQ- 144 (220)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCc--ccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH-hCCeEEEEEecCCCCCc-
Confidence 356788899999999999987532 23456777777762122233333345566665555 3676655 433332111
Q ss_pred ccccccCcChHHHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
. +-..+++-+.++++...+. ++||.++|||. ...+.+...+|||.+.+||.+.
T Consensus 145 -~---fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf 199 (220)
T PRK08883 145 -S---FIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIF 199 (220)
T ss_pred -e---ecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHh
Confidence 1 1112344555555554432 48999999998 8899999999999999999864
No 283
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.42 E-value=0.0051 Score=58.47 Aligned_cols=122 Identities=21% Similarity=0.279 Sum_probs=80.9
Q ss_pred cceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEE
Q 010640 236 KWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 236 ~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~ 315 (505)
.+.+++..-.. .+.++.++++|++++.. .+... +.++..++. +++.+. ++.|+.++..+.++|++.++
T Consensus 66 ~~~IGAGTVl~---~~~a~~a~~aGA~Fivs---P~~~~---~vi~~a~~~--~i~~iP-G~~TptEi~~a~~~Ga~~vK 133 (212)
T PRK05718 66 EALIGAGTVLN---PEQLAQAIEAGAQFIVS---PGLTP---PLLKAAQEG--PIPLIP-GVSTPSELMLGMELGLRTFK 133 (212)
T ss_pred CCEEEEeeccC---HHHHHHHHHcCCCEEEC---CCCCH---HHHHHHHHc--CCCEeC-CCCCHHHHHHHHHCCCCEEE
Confidence 45677665332 37788999999999964 22222 555555565 678766 68899999999999999998
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+= ++ ... + |...+.++ +... -++|+++.|||.- .++...+.+|+..+..|+.+.
T Consensus 134 lF--Pa-----~~~-g-g~~~lk~l---~~p~--p~~~~~ptGGV~~-~ni~~~l~ag~v~~vggs~L~ 187 (212)
T PRK05718 134 FF--PA-----EAS-G-GVKMLKAL---AGPF--PDVRFCPTGGISP-ANYRDYLALPNVLCIGGSWMV 187 (212)
T ss_pred Ec--cc-----hhc-c-CHHHHHHH---hccC--CCCeEEEeCCCCH-HHHHHHHhCCCEEEEEChHhC
Confidence 71 10 001 0 12222222 2222 2489999999854 899999999976666676653
No 284
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=97.42 E-value=0.0052 Score=58.72 Aligned_cols=121 Identities=17% Similarity=0.221 Sum_probs=88.9
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEccc-CCHHHHHHHHHcCCCEEEEccCCcce
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNV-VTMYQAQNLIEAGVDGLRVGMGSGSI 323 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V-~t~e~a~~l~~aGad~I~v~~g~g~~ 323 (505)
...+..+.++.+.++|++++.+....+...+..+.++.+++.. ++||+.++. .+.+.++.+.++|+|++.++.
T Consensus 29 ~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v-~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~----- 102 (217)
T cd00331 29 EDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAV-SLPVLRKDFIIDPYQIYEARAAGADAVLLIV----- 102 (217)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhc-CCCEEECCeecCHHHHHHHHHcCCCEEEEee-----
Confidence 3456889999999999999988654444434557777777775 799988654 466789999999999997752
Q ss_pred eecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccc
Q 010640 324 CTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSF 382 (505)
Q Consensus 324 ~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~ 382 (505)
. ..+. ..+.++.+.+...++.++. .+.+..++.++..+|++.+.++..
T Consensus 103 ---~-----~~~~-~~~~~~~~~~~~~g~~~~v--~v~~~~e~~~~~~~g~~~i~~t~~ 150 (217)
T cd00331 103 ---A-----ALDD-EQLKELYELARELGMEVLV--EVHDEEELERALALGAKIIGINNR 150 (217)
T ss_pred ---c-----cCCH-HHHHHHHHHHHHcCCeEEE--EECCHHHHHHHHHcCCCEEEEeCC
Confidence 1 1122 4445555555566777766 668999999999999999988743
No 285
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=97.41 E-value=0.002 Score=61.38 Aligned_cols=131 Identities=18% Similarity=0.252 Sum_probs=79.5
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCc-hhHHHHHHHHHHhCCCceEEE--cccC------------------C--------
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNS-SFQIEMIKYAKKTYPELDVIG--GNVV------------------T-------- 299 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~-~~~~~~i~~l~~~~~~~~Vi~--g~V~------------------t-------- 299 (505)
..+.++.+.+.|.|++.+..+.|.. .++.+.++.+|+. .+|++. |+.. +
T Consensus 16 ~~~~~~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~--~lPvilfp~~~~~i~~~aDa~l~~svlNs~~~~~iig~~ 93 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIGGSQGVTYEKTDTLIEALRRY--GLPIILFPSNPTNVSRDADALFFPSVLNSDDPYWIIGAQ 93 (223)
T ss_pred cHHHHHHHHhcCCCEEEEcCCCcccHHHHHHHHHHHhcc--CCCEEEeCCCccccCcCCCEEEEEEeecCCCchHHHhHH
Confidence 5578888999999999998888755 5666678888864 477764 3221 1
Q ss_pred HHHHHHHHHcCC-----CEEEEccCCccee---eccc--------------------------c--cccCcCh-HHHHHH
Q 010640 300 MYQAQNLIEAGV-----DGLRVGMGSGSIC---TTQE--------------------------V--CAVGRGQ-ATAVYK 342 (505)
Q Consensus 300 ~e~a~~l~~aGa-----d~I~v~~g~g~~~---~~~~--------------------------~--~g~g~p~-~~~l~~ 342 (505)
.+.+..+.+.+- -++++..+ +... .++. . .+.|.|. .+.+..
T Consensus 94 ~~~~~~~~~~~~e~ip~gYiv~~~~-~~v~~v~~a~~~p~~~~~~aa~~~lA~~~~g~~~vYlE~gs~~g~~v~~e~i~~ 172 (223)
T TIGR01768 94 IEAAPKFKKIGEEIIPEGYIIVNPG-GAAARVTKAKPIPYDKEDLAAYAAMAEEMLGMPIIYLEAGSGAPEPVPPELVAE 172 (223)
T ss_pred HHHHHHHhhhcceecceEEEEECCC-cceeecccccccCCCcHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcCHHHHHH
Confidence 112222222221 12222211 1110 0000 1 2233222 334444
Q ss_pred HHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 343 VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 343 v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+++... ++|++..|||++.+++.+++.+|||.|.+|+.+.
T Consensus 173 v~~~~~--~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~ 212 (223)
T TIGR01768 173 VKKVLD--KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIE 212 (223)
T ss_pred HHHHcC--CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHh
Confidence 444321 6999999999999999999999999999999874
No 286
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=97.39 E-value=0.0016 Score=64.34 Aligned_cols=89 Identities=20% Similarity=0.232 Sum_probs=66.1
Q ss_pred HHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhc--CCcE
Q 010640 277 IEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQS--GVPV 354 (505)
Q Consensus 277 ~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~--~ipv 354 (505)
.+.++.+|+..|..++.+ ++.|.+++..+.++|+|+|.++. .. | +.+.++.+..+.. ++|+
T Consensus 171 ~~av~~~R~~~~~~~IgV-ev~t~eea~~A~~~gaD~I~ld~----~~----------p--~~l~~~~~~~~~~~~~i~i 233 (272)
T cd01573 171 LKALARLRATAPEKKIVV-EVDSLEEALAAAEAGADILQLDK----FS----------P--EELAELVPKLRSLAPPVLL 233 (272)
T ss_pred HHHHHHHHHhCCCCeEEE-EcCCHHHHHHHHHcCCCEEEECC----CC----------H--HHHHHHHHHHhccCCCceE
Confidence 567777787776665555 78899999999999999997752 00 1 1223333333322 5899
Q ss_pred EecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 355 IADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 355 Ia~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
+++||| +...+......|+|++.+|..+
T Consensus 234 ~AsGGI-~~~ni~~~~~~Gvd~I~vsai~ 261 (272)
T cd01573 234 AAAGGI-NIENAAAYAAAGADILVTSAPY 261 (272)
T ss_pred EEECCC-CHHHHHHHHHcCCcEEEEChhh
Confidence 999999 9999999999999999888764
No 287
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=97.39 E-value=0.0013 Score=63.87 Aligned_cols=123 Identities=22% Similarity=0.201 Sum_probs=83.0
Q ss_pred HHHHHHHHHcCccEEEEeCCC-----CCchhHHHHHHHHHHhC--CCceEEEcccCCH-------------HHHHHHHHc
Q 010640 250 KERLEHLVKAGVNVVVLDSSQ-----GNSSFQIEMIKYAKKTY--PELDVIGGNVVTM-------------YQAQNLIEA 309 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~-----g~~~~~~~~i~~l~~~~--~~~~Vi~g~V~t~-------------e~a~~l~~a 309 (505)
...++.+++.|+|.+.+.... +......+.+..+++.+ -.+|+|+-..... ..++.+.++
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~ 158 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAEL 158 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHh
Confidence 567788899999998665432 33345556666665543 2567777433332 335777889
Q ss_pred CCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCc----EEecCCC------CCHHHHHHHHHhCC--CEE
Q 010640 310 GVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVP----VIADGGI------SNSGHIVKALVLGA--STV 377 (505)
Q Consensus 310 Gad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ip----vIa~GGI------~~~~di~kal~lGA--~~V 377 (505)
|+|+|+.+.+. . ...+...+...++..+...+| |.++||+ ++..++.+.+.+|| .++
T Consensus 159 GaD~vKt~tg~----------~-~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~ 227 (236)
T PF01791_consen 159 GADFVKTSTGK----------P-VGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGT 227 (236)
T ss_dssp T-SEEEEE-SS----------S-SCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEE
T ss_pred CCCEEEecCCc----------c-ccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHH
Confidence 99999987431 0 124555566666777666788 9999999 99999999999999 777
Q ss_pred Eecccc
Q 010640 378 MMGSFL 383 (505)
Q Consensus 378 ~~G~~f 383 (505)
..|+.+
T Consensus 228 ~~Gr~i 233 (236)
T PF01791_consen 228 SSGRNI 233 (236)
T ss_dssp EEHHHH
T ss_pred HHHHHH
Confidence 777654
No 288
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=97.39 E-value=0.0082 Score=56.99 Aligned_cols=120 Identities=18% Similarity=0.224 Sum_probs=79.3
Q ss_pred HHHHHHHHHHcCccEEEEeCCC-----CCchhHHHHHHHHHHhCCCceEEE---cccCCHH----HHHHHHHcCCCEEEE
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQ-----GNSSFQIEMIKYAKKTYPELDVIG---GNVVTMY----QAQNLIEAGVDGLRV 316 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~-----g~~~~~~~~i~~l~~~~~~~~Vi~---g~V~t~e----~a~~l~~aGad~I~v 316 (505)
....++.+++.|+|.+.+.... |+.....+.++.+++...+.|+.+ ....+.+ .++.+.++|+|+|+.
T Consensus 72 K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKT 151 (211)
T TIGR00126 72 KLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKT 151 (211)
T ss_pred HHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence 4456677888999998765433 445667778888887764454433 1223323 346677899999998
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
+.|-+. +..++..+...++..+. ++||-++|||++..++.+.+.+||+-++.
T Consensus 152 sTGf~~----------~gat~~dv~~m~~~v~~-~v~IKaaGGirt~~~a~~~i~aGa~riGt 203 (211)
T TIGR00126 152 STGFGA----------GGATVEDVRLMRNTVGD-TIGVKASGGVRTAEDAIAMIEAGASRIGA 203 (211)
T ss_pred CCCCCC----------CCCCHHHHHHHHHHhcc-CCeEEEeCCCCCHHHHHHHHHHhhHHhCc
Confidence 743210 11233444444444432 69999999999999999999999985543
No 289
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.38 E-value=0.0029 Score=60.64 Aligned_cols=116 Identities=16% Similarity=0.071 Sum_probs=73.5
Q ss_pred HHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccc
Q 010640 253 LEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCA 331 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g 331 (505)
.+.+.+.|+|.+++. .... .+...++.. ++..|.+....+.+++..+.+.|+|++.+|- +.++ ...+
T Consensus 80 ~dlA~~~~adGVHLg--~~d~-----~~~~~r~~~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gp----v~t~-tK~~ 147 (221)
T PRK06512 80 SRIAGRVKADGLHIE--GNLA-----ALAEAIEKHAPKMIVGFGNLRDRHGAMEIGELRPDYLFFGK----LGAD-NKPE 147 (221)
T ss_pred HHHHHHhCCCEEEEC--cccc-----CHHHHHHhcCCCCEEEecCCCCHHHHHHhhhcCCCEEEECC----CCCC-CCCC
Confidence 555667788888772 2111 123444443 2333333335678888888899999997761 2111 1111
Q ss_pred cCcC-hHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 332 VGRG-QATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 332 ~g~p-~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
..| .+..+..+ ++..++||++-||| +..++..++..||++|.+-+.+..
T Consensus 148 -~~p~gl~~l~~~---~~~~~iPvvAIGGI-~~~n~~~~~~~GA~giAvisai~~ 197 (221)
T PRK06512 148 -AHPRNLSLAEWW---AEMIEIPCIVQAGS-DLASAVEVAETGAEFVALERAVFD 197 (221)
T ss_pred -CCCCChHHHHHH---HHhCCCCEEEEeCC-CHHHHHHHHHhCCCEEEEhHHhhC
Confidence 112 23333333 34457999999999 999999999999999999888764
No 290
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=97.38 E-value=0.0057 Score=57.92 Aligned_cols=127 Identities=15% Similarity=0.182 Sum_probs=75.7
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEEc-cCCcceeec
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRVG-MGSGSICTT 326 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v~-~g~g~~~~~ 326 (505)
..+.++.+.+.|+|.+.++... .......++.+++. +..++.. +..+..........++|.+... ..+|...
T Consensus 68 ~~~~~~~~~~~gadgv~vh~~~--~~~~~~~~~~~~~~--g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg-- 141 (210)
T TIGR01163 68 PDRYIEDFAEAGADIITVHPEA--SEHIHRLLQLIKDL--GAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGG-- 141 (210)
T ss_pred HHHHHHHHHHcCCCEEEEccCC--chhHHHHHHHHHHc--CCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCc--
Confidence 3466888889999999886532 22344555555555 3333332 2334444444445678987653 1111100
Q ss_pred ccccccCcChHHHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
..+....+..+.++++...+. ++|++++|||. ..++.+++..||+++.+|+.+..
T Consensus 142 ---~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsai~~ 198 (210)
T TIGR01163 142 ---QKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAGSAIFG 198 (210)
T ss_pred ---ccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChHHhC
Confidence 011112233444444443322 37899999995 79999999999999999999864
No 291
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=97.34 E-value=0.0088 Score=63.27 Aligned_cols=133 Identities=13% Similarity=0.159 Sum_probs=85.7
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEccc-CCHHHHHHHHHcCCCEEEEcc---CC---
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNV-VTMYQAQNLIEAGVDGLRVGM---GS--- 320 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V-~t~e~a~~l~~aGad~I~v~~---g~--- 320 (505)
+..+.++.+ +.|+.++.+-+...+..+..+.++.+++.. .+||+.+.. .+......+..+|||+|-+-. +.
T Consensus 71 d~~~~a~~y-~~gA~aiSVlTe~~~F~Gs~~~l~~vr~~v-~~PvLrKDFiid~~QI~ea~~~GADavLLI~~~L~~~~l 148 (454)
T PRK09427 71 DPAEIARVY-KHYASAISVLTDEKYFQGSFDFLPIVRAIV-TQPILCKDFIIDPYQIYLARYYGADAILLMLSVLDDEQY 148 (454)
T ss_pred CHHHHHHHH-HcCCeEEEEecCcCcCCCCHHHHHHHHHhC-CCCEEeccccCCHHHHHHHHHcCCCchhHHHHhCCHHHH
Confidence 456777777 888999988665554555677778888876 688888865 477777777778888875421 00
Q ss_pred ------------------------------cc--e-eecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHH
Q 010640 321 ------------------------------GS--I-CTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIV 367 (505)
Q Consensus 321 ------------------------------g~--~-~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~ 367 (505)
|. + -..|++..+-+. +.....+....+ .++.+|+.+||.++.|+.
T Consensus 149 ~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGiNnRdL~t~~vd-~~~~~~l~~~ip-~~~~~vseSGI~t~~d~~ 226 (454)
T PRK09427 149 RQLAAVAHSLNMGVLTEVSNEEELERAIALGAKVIGINNRNLRDLSID-LNRTRELAPLIP-ADVIVISESGIYTHAQVR 226 (454)
T ss_pred HHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEEeCCCCccceEC-HHHHHHHHhhCC-CCcEEEEeCCCCCHHHHH
Confidence 00 0 011222211111 122223333333 257889999999999998
Q ss_pred HHHHhCCCEEEecccccC
Q 010640 368 KALVLGASTVMMGSFLAG 385 (505)
Q Consensus 368 kal~lGA~~V~~G~~f~~ 385 (505)
++. .|||+|.+|+.|+.
T Consensus 227 ~~~-~~~davLiG~~lm~ 243 (454)
T PRK09427 227 ELS-PFANGFLIGSSLMA 243 (454)
T ss_pred HHH-hcCCEEEECHHHcC
Confidence 865 58999999999864
No 292
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=97.32 E-value=0.0054 Score=59.74 Aligned_cols=126 Identities=14% Similarity=0.113 Sum_probs=81.4
Q ss_pred HHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEE-ccCCcceeeccc
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRV-GMGSGSICTTQE 328 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v-~~g~g~~~~~~~ 328 (505)
...++.+.++|++.+.+..- +.+...+.++.+++.-...-+.+....+.+..+.+.+...+++.+ +..++....
T Consensus 94 ~~fi~~~~~aG~~giiipDl--~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~--- 168 (242)
T cd04724 94 ERFLRDAKEAGVDGLIIPDL--PPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGAR--- 168 (242)
T ss_pred HHHHHHHHHCCCcEEEECCC--CHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCc---
Confidence 46788899999998887322 123455667777776212223345556777788888766776654 432221111
Q ss_pred ccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 329 VCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 329 ~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.++.......+..+++ ..++||+.+|||.++.++.++..+ ||++.+||.|..
T Consensus 169 -~~~~~~~~~~i~~lr~---~~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~ 220 (242)
T cd04724 169 -TELPDDLKELIKRIRK---YTDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVK 220 (242)
T ss_pred -cCCChhHHHHHHHHHh---cCCCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHH
Confidence 1111123334444443 347999999999999999999999 999999999853
No 293
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.31 E-value=0.00054 Score=47.34 Aligned_cols=46 Identities=22% Similarity=0.346 Sum_probs=41.7
Q ss_pred ceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 176 NVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 176 ~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
+.++.+++++.++++.|.+.+...+||+++ ++++|+++..++.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 467889999999999999999999999998 9999999999987653
No 294
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.28 E-value=0.018 Score=55.87 Aligned_cols=175 Identities=15% Similarity=0.156 Sum_probs=103.0
Q ss_pred ecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHH
Q 010640 179 VPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVK 258 (505)
Q Consensus 179 v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lie 258 (505)
+..+++..+.++.+.+.+..++-|||= |-- -.++++.... .....+.++..+. . +.++.+++
T Consensus 34 ~y~~~pp~~~A~~~~~~Ga~~lHvVDL----g~~-n~~~i~~i~~--------~~~~~v~vGGGIr----~-e~v~~~l~ 95 (253)
T TIGR02129 34 FVSDKPSSYYAKLYKDDGVKGCHVIML----GPN-NDDAAKEALH--------AYPGGLQVGGGIN----D-TNAQEWLD 95 (253)
T ss_pred EecCCCHHHHHHHHHHcCCCEEEEEEC----CCC-cHHHHHHHHH--------hCCCCEEEeCCcC----H-HHHHHHHH
Confidence 445566678888999999999999983 333 3344443321 1123445555552 4 88999999
Q ss_pred cCccEEEEeCCC-CCchhHHHHHHHHHHhC-CCceEEE---c-------cc----------CC-H-HHHHHHHHcCCCEE
Q 010640 259 AGVNVVVLDSSQ-GNSSFQIEMIKYAKKTY-PELDVIG---G-------NV----------VT-M-YQAQNLIEAGVDGL 314 (505)
Q Consensus 259 aGad~I~i~~~~-g~~~~~~~~i~~l~~~~-~~~~Vi~---g-------~V----------~t-~-e~a~~l~~aGad~I 314 (505)
+|++.+.+.+.. ..+....+.++.+.+.| ++..++. + .| .+ . +.++.+.+. +..|
T Consensus 96 aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~~-~~~i 174 (253)
T TIGR02129 96 EGASHVIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEELSKY-CDEF 174 (253)
T ss_pred cCCCEEEECcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHHHHhh-CCEE
Confidence 999999985421 11111134566666666 2221110 1 11 02 2 344555555 7766
Q ss_pred EEccCCcceeeccccccc-CcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHh--CCCEEEecccc
Q 010640 315 RVGMGSGSICTTQEVCAV-GRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVL--GASTVMMGSFL 383 (505)
Q Consensus 315 ~v~~g~g~~~~~~~~~g~-g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~l--GA~~V~~G~~f 383 (505)
.+- .-...|. ..|.++.+..+++ ..++|||++||+.+..|+.++-.+ |...+.+|.++
T Consensus 175 l~T--------dI~rDGtl~G~dlel~~~l~~---~~~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Al 235 (253)
T TIGR02129 175 LIH--------AADVEGLCKGIDEELVSKLGE---WSPIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSAL 235 (253)
T ss_pred EEe--------eecccCccccCCHHHHHHHHh---hCCCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehH
Confidence 442 1111111 1255666655544 467999999999999999998665 55557778765
No 295
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.27 E-value=0.0019 Score=56.76 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=44.5
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++.++.+++++.++++.|.+.+...+||+|+ |+++|+||..|+++...
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~ 50 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLF 50 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHh
Confidence 5788999999999999999999999999998 99999999999998764
No 296
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=97.27 E-value=0.001 Score=65.33 Aligned_cols=77 Identities=22% Similarity=0.216 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 300 MYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
.+.++.+.+.|++.+.+. .-+. ..+ +.+.+..+..+ ++..++||+++|||++..|+.+++.+||+.|+
T Consensus 33 ~~~a~~~~~~G~~~l~v~Dl~~~-------~~~-~~~n~~~i~~i---~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vi 101 (254)
T TIGR00735 33 VELAQRYDEEGADELVFLDITAS-------SEG-RTTMIDVVERT---AETVFIPLTVGGGIKSIEDVDKLLRAGADKVS 101 (254)
T ss_pred HHHHHHHHHcCCCEEEEEcCCcc-------ccc-ChhhHHHHHHH---HHhcCCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 356777888999988763 1110 011 11334444444 34457999999999999999999999999999
Q ss_pred ecccccCCC
Q 010640 379 MGSFLAGST 387 (505)
Q Consensus 379 ~G~~f~~~~ 387 (505)
+|+.++...
T Consensus 102 vgt~~~~~p 110 (254)
T TIGR00735 102 INTAAVKNP 110 (254)
T ss_pred EChhHhhCh
Confidence 999886543
No 297
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=97.25 E-value=0.0027 Score=60.68 Aligned_cols=34 Identities=29% Similarity=0.563 Sum_probs=30.5
Q ss_pred cCCcEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 350 SGVPVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 350 ~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
.++|+|..|||++++.+.+++.+|||.|.+|+.|
T Consensus 181 ~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~i 214 (230)
T PF01884_consen 181 SDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAI 214 (230)
T ss_dssp SSSEEEEESS--SHHHHHHHHCTTSSEEEESCHH
T ss_pred CCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEE
Confidence 4699999999999999999999999999999988
No 298
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.24 E-value=0.00066 Score=57.88 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=43.9
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
++.++++++++.++++.|.+++.+.+||+|+ |+++|++|..|++...
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~ 49 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLA 49 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHH
Confidence 6788999999999999999999999999998 9999999999999754
No 299
>PLN02411 12-oxophytodienoate reductase
Probab=97.22 E-value=0.0051 Score=64.13 Aligned_cols=138 Identities=12% Similarity=0.135 Sum_probs=81.4
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC------------------------chhHHHHHHHHHHhCCCceEEEc-cc-----
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN------------------------SSFQIEMIKYAKKTYPELDVIGG-NV----- 297 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~------------------------~~~~~~~i~~l~~~~~~~~Vi~g-~V----- 297 (505)
++.+.++.+.++|.|.|+||.++|+ .+-.++.++.+|+.+..-.|.+. +.
T Consensus 166 ~f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~ 245 (391)
T PLN02411 166 HYRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHL 245 (391)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEccccccc
Confidence 3666677888999999999975531 13457888888888732234331 10
Q ss_pred -----CC----HHHHHHHHHc------CCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCC
Q 010640 298 -----VT----MYQAQNLIEA------GVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISN 362 (505)
Q Consensus 298 -----~t----~e~a~~l~~a------Gad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~ 362 (505)
.+ .+.+..+..+ |+|+|.++.|.-...........+ +.........+..+..++|||+.||+ +
T Consensus 246 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~-~~~~~~~~a~~ik~~v~~pvi~~G~i-~ 323 (391)
T PLN02411 246 DATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHG-SEEEEAQLMRTLRRAYQGTFMCSGGF-T 323 (391)
T ss_pred CCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccC-CccchhHHHHHHHHHcCCCEEEECCC-C
Confidence 01 1234444442 599999975321000000000001 00000111122333457899999999 6
Q ss_pred HHHHHHHHHhC-CCEEEecccccCCC
Q 010640 363 SGHIVKALVLG-ASTVMMGSFLAGST 387 (505)
Q Consensus 363 ~~di~kal~lG-A~~V~~G~~f~~~~ 387 (505)
+.+..++++.| ||+|.+|++|+.-.
T Consensus 324 ~~~a~~~l~~g~aDlV~~gR~~iadP 349 (391)
T PLN02411 324 RELGMQAVQQGDADLVSYGRLFISNP 349 (391)
T ss_pred HHHHHHHHHcCCCCEEEECHHHHhCc
Confidence 78899999999 99999999998643
No 300
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=97.21 E-value=0.0093 Score=56.25 Aligned_cols=41 Identities=27% Similarity=0.536 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 337 ATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 337 ~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
...+..+++ ..++|++..|||++++++.+++..|||.|.+|
T Consensus 165 ~e~i~~Vk~---~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 165 PETISLVKK---ASGIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHHHHHHH---hhCCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 334444444 34699999999999999999999999999987
No 301
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=97.21 E-value=0.0036 Score=59.23 Aligned_cols=130 Identities=18% Similarity=0.164 Sum_probs=83.7
Q ss_pred ceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcc-cCCHH--HHHHHHHcCCCE
Q 010640 237 WMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGN-VVTMY--QAQNLIEAGVDG 313 (505)
Q Consensus 237 l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~-V~t~e--~a~~l~~aGad~ 313 (505)
+.++.+..+.++..+.++.+ +.|++++.+.++. ....-.+.++.+++.+++..+++.. +.++. .++.+.++|+|+
T Consensus 2 l~~alD~~~~~~a~~~~~~l-~~~v~~iev~~~l-~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~ 79 (206)
T TIGR03128 2 LQLALDLLDIEEALELAEKV-ADYVDIIEIGTPL-IKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADI 79 (206)
T ss_pred eEEEecCCCHHHHHHHHHHc-ccCeeEEEeCCHH-HHHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCE
Confidence 34555554555667777777 7899999884322 1112257788888887666676643 33433 688899999999
Q ss_pred EEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEec-CCCCCH-HHHHHHHHhCCCEEEecccc
Q 010640 314 LRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIAD-GGISNS-GHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 314 I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~-GGI~~~-~di~kal~lGA~~V~~G~~f 383 (505)
|.+-.. . + ...+.++.+.+++.+++++++ -+..+. .++..+..+|+|.|.+.+.|
T Consensus 80 i~vh~~------~--------~-~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~ 136 (206)
T TIGR03128 80 VTVLGV------A--------D-DATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYIGVHTGL 136 (206)
T ss_pred EEEecc------C--------C-HHHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCc
Confidence 965310 0 1 122345556677788999884 244443 67778888999999775433
No 302
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.20 E-value=0.0039 Score=61.89 Aligned_cols=91 Identities=18% Similarity=0.177 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhCC-CceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHh--hcCC
Q 010640 276 QIEMIKYAKKTYP-ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAA--QSGV 352 (505)
Q Consensus 276 ~~~~i~~l~~~~~-~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~--~~~i 352 (505)
+.+.++.+|+..+ ..+|.+ ++.|.+++..+.++|+|+|.+++ ++ ++.+.++....+ ..++
T Consensus 182 i~~av~~~r~~~~~~~~I~V-Ev~tleea~eA~~~GaD~I~LDn-------------~~---~e~l~~av~~~~~~~~~i 244 (288)
T PRK07428 182 IGEAITRIRQRIPYPLTIEV-ETETLEQVQEALEYGADIIMLDN-------------MP---VDLMQQAVQLIRQQNPRV 244 (288)
T ss_pred HHHHHHHHHHhCCCCCEEEE-ECCCHHHHHHHHHcCCCEEEECC-------------CC---HHHHHHHHHHHHhcCCCe
Confidence 5677888888875 344444 88999999999999999997752 12 233444443332 2358
Q ss_pred cEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 353 PVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 353 pvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
|+.++||| |...+.+..+.|+|.+.+|++..
T Consensus 245 ~leAsGGI-t~~ni~~ya~tGvD~Isvgsl~~ 275 (288)
T PRK07428 245 KIEASGNI-TLETIRAVAETGVDYISSSAPIT 275 (288)
T ss_pred EEEEECCC-CHHHHHHHHHcCCCEEEEchhhh
Confidence 99999999 79999999999999999999764
No 303
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=97.18 E-value=0.011 Score=58.18 Aligned_cols=118 Identities=16% Similarity=0.206 Sum_probs=90.2
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccC-CHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVV-TMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~-t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
.+..+.++...+.|++++.+.+...+..+..+.++.+++.. ++||+.+... +...+..+..+|||++-+..
T Consensus 70 ~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v-~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~------- 141 (260)
T PRK00278 70 FDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAV-SLPVLRKDFIIDPYQIYEARAAGADAILLIV------- 141 (260)
T ss_pred CCHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhc-CCCEEeeeecCCHHHHHHHHHcCCCEEEEEe-------
Confidence 34678888899999999988665444444578888888876 8999987653 66688999999999996641
Q ss_pred cccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecc
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGS 381 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~ 381 (505)
.. .+ ...+.++.+.++..+..+++ =+.+..++.+|..+||+.+++..
T Consensus 142 -~~-----l~-~~~l~~li~~a~~lGl~~lv--evh~~~E~~~A~~~gadiIgin~ 188 (260)
T PRK00278 142 -AA-----LD-DEQLKELLDYAHSLGLDVLV--EVHDEEELERALKLGAPLIGINN 188 (260)
T ss_pred -cc-----CC-HHHHHHHHHHHHHcCCeEEE--EeCCHHHHHHHHHcCCCEEEECC
Confidence 11 11 24556666777778888888 78899999999999999998764
No 304
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=97.18 E-value=0.0014 Score=68.83 Aligned_cols=60 Identities=12% Similarity=0.049 Sum_probs=55.5
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhhhh
Q 010640 162 NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVERLK 221 (505)
Q Consensus 162 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~~~ 221 (505)
.+.+++++|+++.++++++.++++.++++.+.+++..++||.++ ++++|+|+.+|++...
T Consensus 189 ~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~ 250 (408)
T TIGR03520 189 GNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHL 250 (408)
T ss_pred CCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHh
Confidence 46789999999989999999999999999999999999999976 7999999999998653
No 305
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=97.15 E-value=0.023 Score=55.39 Aligned_cols=207 Identities=17% Similarity=0.191 Sum_probs=111.8
Q ss_pred CeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-Ceee-eEEeechhhhhhc
Q 010640 145 SRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERL-DVVTREDVERLKG 222 (505)
Q Consensus 145 g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~-GiIt~~dil~~~~ 222 (505)
.-++|+|+..-|--.+..+..+.++... ..+=++.+.+.+++.+.|-|. +... --+....+ .++.
T Consensus 3 KpiIGmvHL~pLPGsp~~~~~~~~iie~------------A~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etv-aaM~ 69 (254)
T PF03437_consen 3 KPIIGMVHLPPLPGSPRYDGSMEEIIER------------AVREAEALEEGGVDGIIVENMGDVPYPKRVGPETV-AAMA 69 (254)
T ss_pred CCEEEEEcCCCCCcCCCCCCCHHHHHHH------------HHHHHHHHHHCCCCEEEEecCCCCCccCCCCHHHH-HHHH
Confidence 4578999887663111111122222221 223356789999999999876 4321 11222211 1110
Q ss_pred CCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCccEEEEeC-------CCCCchhHHHHHHHHHHhC-CCceEEE
Q 010640 223 YPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDS-------SQGNSSFQIEMIKYAKKTY-PELDVIG 294 (505)
Q Consensus 223 ~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~-------~~g~~~~~~~~i~~l~~~~-~~~~Vi~ 294 (505)
.... .....-.+++|.++-. .+..+.+..+...|++++=+.. .+|.-......+-+.|+.. .++.++.
T Consensus 70 ~i~~---~v~~~~~~p~GVnvL~-nd~~aalaiA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ila 145 (254)
T PF03437_consen 70 RIAR---EVRREVSVPVGVNVLR-NDPKAALAIAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGADVKILA 145 (254)
T ss_pred HHHH---HHHHhCCCCEEeeeec-CCCHHHHHHHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCCCeEEEe
Confidence 0000 0011224678877742 2345566667778999986532 2333333333333445544 2344444
Q ss_pred cccC----------CH-HHHHHH-HHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCC
Q 010640 295 GNVV----------TM-YQAQNL-IEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISN 362 (505)
Q Consensus 295 g~V~----------t~-e~a~~l-~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~ 362 (505)
.|. +. +.++.+ ...++|+++|+.... + . -+.++-+..+++. ..+||+..+| .|
T Consensus 146 -DV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~T----G-----~-~~~~~~l~~vr~~---~~~PVlvGSG-vt 210 (254)
T PF03437_consen 146 -DVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKAT----G-----E-PPDPEKLKRVREA---VPVPVLVGSG-VT 210 (254)
T ss_pred -eechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCccc----C-----C-CCCHHHHHHHHhc---CCCCEEEecC-CC
Confidence 221 22 344444 578999999973211 1 0 1345555555554 3489999767 57
Q ss_pred HHHHHHHHHhCCCEEEeccccc
Q 010640 363 SGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 363 ~~di~kal~lGA~~V~~G~~f~ 384 (505)
+..+.+.|.. ||++.+||.|.
T Consensus 211 ~~Ni~~~l~~-ADG~IVGS~~K 231 (254)
T PF03437_consen 211 PENIAEYLSY-ADGAIVGSYFK 231 (254)
T ss_pred HHHHHHHHHh-CCEEEEeeeee
Confidence 8899999987 99999999884
No 306
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=97.14 E-value=0.0059 Score=60.03 Aligned_cols=117 Identities=19% Similarity=0.218 Sum_probs=74.4
Q ss_pred HHHHHHHHcCccEEEEeCCCCCc--hhHHHHHHHHHHhC--CCceEEEccc--------CC---HHH-HHHHHHcCCCEE
Q 010640 251 ERLEHLVKAGVNVVVLDSSQGNS--SFQIEMIKYAKKTY--PELDVIGGNV--------VT---MYQ-AQNLIEAGVDGL 314 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~~g~~--~~~~~~i~~l~~~~--~~~~Vi~g~V--------~t---~e~-a~~l~~aGad~I 314 (505)
..++.+++.|++.+.+....+.. ....+.++.+++.. .++|+++-.. .+ ... ++.+.++|+|+|
T Consensus 94 ~~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyi 173 (258)
T TIGR01949 94 TTVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIV 173 (258)
T ss_pred eeHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEE
Confidence 45778889999988775543322 23445566665543 1567665110 12 223 466778999999
Q ss_pred EEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCC--C----HHHHHHHHHhCCCEEEecccccC
Q 010640 315 RVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGIS--N----SGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 315 ~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~--~----~~di~kal~lGA~~V~~G~~f~~ 385 (505)
..+.. +.+..+..+ ++..++||++.|||. + ...+..++.+||+++.+|+.+..
T Consensus 174 kt~~~---------------~~~~~l~~~---~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~ 232 (258)
T TIGR01949 174 KTPYT---------------GDIDSFRDV---VKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQ 232 (258)
T ss_pred eccCC---------------CCHHHHHHH---HHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhc
Confidence 76410 123444433 333569999999999 5 44556666999999999998764
No 307
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.14 E-value=0.0014 Score=63.78 Aligned_cols=77 Identities=22% Similarity=0.223 Sum_probs=54.5
Q ss_pred CHHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEE
Q 010640 299 TMYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTV 377 (505)
Q Consensus 299 t~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V 377 (505)
..+-++.+.++|++.+.+- .... ..+ ..+.+..+..+ ++..++||+++|||++..|+.+++..||++|
T Consensus 29 ~~~~a~~~~~~G~~~i~i~d~~~~-------~~~-~~~~~~~i~~i---~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v 97 (243)
T cd04731 29 PVELAKRYNEQGADELVFLDITAS-------SEG-RETMLDVVERV---AEEVFIPLTVGGGIRSLEDARRLLRAGADKV 97 (243)
T ss_pred HHHHHHHHHHCCCCEEEEEcCCcc-------ccc-CcccHHHHHHH---HHhCCCCEEEeCCCCCHHHHHHHHHcCCceE
Confidence 3466788889999977653 2111 001 11334444444 3445799999999999999999999999999
Q ss_pred EecccccCC
Q 010640 378 MMGSFLAGS 386 (505)
Q Consensus 378 ~~G~~f~~~ 386 (505)
++|+.++..
T Consensus 98 ~ig~~~~~~ 106 (243)
T cd04731 98 SINSAAVEN 106 (243)
T ss_pred EECchhhhC
Confidence 999988654
No 308
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=97.11 E-value=0.011 Score=55.86 Aligned_cols=125 Identities=18% Similarity=0.195 Sum_probs=73.5
Q ss_pred HHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEc-cc-CCHHHHHHHHHcCCCEEEEc-cCCcceeec
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG-NV-VTMYQAQNLIEAGVDGLRVG-MGSGSICTT 326 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g-~V-~t~e~a~~l~~aGad~I~v~-~g~g~~~~~ 326 (505)
.+.++.+.+.|+|.+.++.... ....+.++.+++. +..++.. .. ...+..+.. ..++|++.+. ..+|. +
T Consensus 70 ~~~~~~~~~~g~dgv~vh~~~~--~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~-~~~~d~i~~~~~~~g~---t 141 (211)
T cd00429 70 ERYIEAFAKAGADIITFHAEAT--DHLHRTIQLIKEL--GMKAGVALNPGTPVEVLEPY-LDEVDLVLVMSVNPGF---G 141 (211)
T ss_pred HHHHHHHHHcCCCEEEECccch--hhHHHHHHHHHHC--CCeEEEEecCCCCHHHHHHH-HhhCCEEEEEEECCCC---C
Confidence 4567778899999998866432 2345556656554 4544442 11 233444444 3448988664 21111 0
Q ss_pred ccccccCcChHHHHHHHHHHHh--hcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 327 QEVCAVGRGQATAVYKVSSIAA--QSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~--~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.. .+.......+.++++... ..++|++++|||.. .++.+++..||+++.+|+.|..
T Consensus 142 g~--~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iivgsai~~ 199 (211)
T cd00429 142 GQ--KFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGSALFG 199 (211)
T ss_pred Cc--ccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhC
Confidence 00 111112223333333321 11389999999996 9999999999999999999864
No 309
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=97.09 E-value=0.075 Score=49.01 Aligned_cols=73 Identities=25% Similarity=0.346 Sum_probs=52.6
Q ss_pred eEEEeecCCccHHHHHHHHHHcCccEEEEeCCC------CCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcC
Q 010640 238 MVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQ------GNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAG 310 (505)
Q Consensus 238 ~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~------g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aG 310 (505)
.+.+++. ..+....+.++|+|++..+.+. + ....+++++.+.+. ++|||+ |.+.+++.+.++.++|
T Consensus 94 l~MADis----t~ee~~~A~~~G~D~I~TTLsGYT~~t~~-~~pD~~lv~~l~~~--~~pvIaEGri~tpe~a~~al~~G 166 (192)
T PF04131_consen 94 LVMADIS----TLEEAINAAELGFDIIGTTLSGYTPYTKG-DGPDFELVRELVQA--DVPVIAEGRIHTPEQAAKALELG 166 (192)
T ss_dssp EEEEE-S----SHHHHHHHHHTT-SEEE-TTTTSSTTSTT-SSHHHHHHHHHHHT--TSEEEEESS--SHHHHHHHHHTT
T ss_pred EEeeecC----CHHHHHHHHHcCCCEEEcccccCCCCCCC-CCCCHHHHHHHHhC--CCcEeecCCCCCHHHHHHHHhcC
Confidence 4455664 4467777889999999875422 2 45678899999886 799877 9999999999999999
Q ss_pred CCEEEEc
Q 010640 311 VDGLRVG 317 (505)
Q Consensus 311 ad~I~v~ 317 (505)
+++++||
T Consensus 167 A~aVVVG 173 (192)
T PF04131_consen 167 AHAVVVG 173 (192)
T ss_dssp -SEEEE-
T ss_pred CeEEEEC
Confidence 9999997
No 310
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.08 E-value=0.0067 Score=59.98 Aligned_cols=89 Identities=17% Similarity=0.234 Sum_probs=66.1
Q ss_pred HHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEe
Q 010640 277 IEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIA 356 (505)
Q Consensus 277 ~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa 356 (505)
...++..|+..|..+|.+ ++.|.+++..+.++|+|+|...+ + .++.+.++.+..+ .++|+.+
T Consensus 177 ~~av~~~r~~~~~~~I~V-Ev~tleea~eA~~~gaD~I~LD~-------------~---~~e~l~~~v~~~~-~~i~leA 238 (277)
T PRK05742 177 AQAVAAAHRIAPGKPVEV-EVESLDELRQALAAGADIVMLDE-------------L---SLDDMREAVRLTA-GRAKLEA 238 (277)
T ss_pred HHHHHHHHHhCCCCeEEE-EeCCHHHHHHHHHcCCCEEEECC-------------C---CHHHHHHHHHHhC-CCCcEEE
Confidence 445666777655566655 78899999999999999996541 1 2333444444332 2689999
Q ss_pred cCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 357 DGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 357 ~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+||| +...+......|+|.+.+|+...
T Consensus 239 sGGI-t~~ni~~~a~tGvD~Isvg~lt~ 265 (277)
T PRK05742 239 SGGI-NESTLRVIAETGVDYISIGAMTK 265 (277)
T ss_pred ECCC-CHHHHHHHHHcCCCEEEEChhhc
Confidence 9999 79999999999999999998653
No 311
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.08 E-value=0.002 Score=63.15 Aligned_cols=77 Identities=22% Similarity=0.220 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 300 MYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
.+.++.+.+.|++.+.+- .. +...+. ...+..+..++ +..++||+++|||++..|+.+++..||+.|+
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~-------~~~~~~-~~~~~~i~~i~---~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Vi 101 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDIT-------ASSEGR-DTMLDVVERVA---EQVFIPLTVGGGIRSVEDARRLLRAGADKVS 101 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCC-------cccccC-cchHHHHHHHH---HhCCCCEEeeCCCCCHHHHHHHHHcCCCEEE
Confidence 456777788999988763 11 100111 13344554444 4457999999999999999999999999999
Q ss_pred ecccccCCC
Q 010640 379 MGSFLAGST 387 (505)
Q Consensus 379 ~G~~f~~~~ 387 (505)
+|+.++...
T Consensus 102 igt~~l~~p 110 (253)
T PRK02083 102 INSAAVANP 110 (253)
T ss_pred EChhHhhCc
Confidence 999876543
No 312
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.07 E-value=0.0065 Score=60.01 Aligned_cols=92 Identities=20% Similarity=0.157 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhh----c
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQ----S 350 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~----~ 350 (505)
.+.+.++.+|+..|..+|.+ ++.+.+++..+.++|+|.|.+.+ .+++.+.++.+..+. .
T Consensus 168 ~i~~av~~~r~~~~~~kIeV-Ev~~leea~~a~~agaDiI~LDn----------------~~~e~l~~~v~~l~~~~~~~ 230 (278)
T PRK08385 168 PLEEAIRRAKEFSVYKVVEV-EVESLEDALKAAKAGADIIMLDN----------------MTPEEIREVIEALKREGLRE 230 (278)
T ss_pred HHHHHHHHHHHhCCCCcEEE-EeCCHHHHHHHHHcCcCEEEECC----------------CCHHHHHHHHHHHHhcCcCC
Confidence 35677777887766667766 89999999999999999996653 124455555554432 2
Q ss_pred CCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 351 GVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 351 ~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
++.+.++||| |...+.+....|+|.+.+|++..
T Consensus 231 ~~~leaSGGI-~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 231 RVKIEVSGGI-TPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred CEEEEEECCC-CHHHHHHHHHcCCCEEEeChhhc
Confidence 4789999999 99999999999999999998764
No 313
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.07 E-value=0.0028 Score=64.51 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=50.6
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 164 VKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 164 ~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
.++.++|++..+++++++++++.++++.|.+.+...+||+|+ |+++|+||..|+.+..
T Consensus 202 ~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~ 260 (326)
T PRK10892 202 LRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVF 260 (326)
T ss_pred CcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHH
Confidence 468899985347899999999999999999999888888887 9999999999998654
No 314
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=97.06 E-value=0.0066 Score=57.50 Aligned_cols=119 Identities=23% Similarity=0.247 Sum_probs=76.3
Q ss_pred HHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccc
Q 010640 252 RLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCA 331 (505)
Q Consensus 252 ~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g 331 (505)
+++.+.+.++|.+++ .+... .+...++.++.--++.-++.+.+++..+.+.|+|+|-+| .+..|....+
T Consensus 73 ~~dlA~~~~AdGVHl--Gq~D~-----~~~~ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv~~G----pifpT~tK~~ 141 (211)
T COG0352 73 RVDLALAVGADGVHL--GQDDM-----PLAEARELLGPGLIIGLSTHDLEEALEAEELGADYVGLG----PIFPTSTKPD 141 (211)
T ss_pred cHHHHHhCCCCEEEc--CCccc-----chHHHHHhcCCCCEEEeecCCHHHHHHHHhcCCCEEEEC----CcCCCCCCCC
Confidence 345566788888877 32211 122334444332233336679999999999999999664 3344433333
Q ss_pred cCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 332 VGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 332 ~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
...-.+..+..+.+ ...+|+++-||| +...+...+..||++|.+-+.+..
T Consensus 142 ~~~~G~~~l~~~~~---~~~iP~vAIGGi-~~~nv~~v~~~Ga~gVAvvsai~~ 191 (211)
T COG0352 142 APPLGLEGLREIRE---LVNIPVVAIGGI-NLENVPEVLEAGADGVAVVSAITS 191 (211)
T ss_pred CCccCHHHHHHHHH---hCCCCEEEEcCC-CHHHHHHHHHhCCCeEEehhHhhc
Confidence 31122333333333 234999999996 788999999999999999988764
No 315
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.06 E-value=0.0012 Score=55.56 Aligned_cols=47 Identities=15% Similarity=0.104 Sum_probs=43.9
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
++++++.++++.++++.|.+.+...+||+|+ |+++|+++..|+++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~ 49 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKL 49 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHh
Confidence 6788999999999999999999999999998 9999999999998765
No 316
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.05 E-value=0.003 Score=52.21 Aligned_cols=85 Identities=14% Similarity=0.201 Sum_probs=58.3
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHH
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERL 253 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~ 253 (505)
++++++++.++.++++.|.+.+...+||+|+ |+++|++|..|++........ +.-..... .+.......+.+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~ 74 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASGGCCG-----DHAEPFKV--TVSVDDDLRIVL 74 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcccchh-----hhcccCCE--EECCCCCHHHHH
Confidence 5678899999999999999999999999998 999999999999875432111 10011111 122223355666
Q ss_pred HHHHHcCccEEEE
Q 010640 254 EHLVKAGVNVVVL 266 (505)
Q Consensus 254 ~~lieaGad~I~i 266 (505)
+.+.+.+...+.+
T Consensus 75 ~~~~~~~~~~~~V 87 (106)
T cd04582 75 SRMFAHDMSWLPC 87 (106)
T ss_pred HHHHHCCCCeeeE
Confidence 7777777775544
No 317
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.04 E-value=0.0031 Score=63.98 Aligned_cols=57 Identities=18% Similarity=0.142 Sum_probs=52.0
Q ss_pred ccccccccccCCC--ceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 163 KVKIFDYMRDCSS--NVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 163 ~~~v~~im~~~~~--~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
..+|.++|++ + ++++++++++.++++.|.+.+...+||+|+ |+++|+||..|+.+..
T Consensus 196 ~~~V~~im~~--~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~ 255 (321)
T PRK11543 196 LNKVHHLMRR--DDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWL 255 (321)
T ss_pred HhHHHHHhcc--CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHH
Confidence 4578999998 6 999999999999999999999999999998 9999999999988654
No 318
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=97.04 E-value=0.0059 Score=56.58 Aligned_cols=114 Identities=25% Similarity=0.246 Sum_probs=67.9
Q ss_pred HHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccc
Q 010640 253 LEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCA 331 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g 331 (505)
.+.+.+.+++.+++....-. .. ..++.+ ++..+ ..++-+.++++.+.+.|+|++.+|- +..+....+
T Consensus 65 ~~la~~~~~dGvHl~~~~~~---~~----~~r~~~~~~~~i-g~S~h~~~e~~~a~~~g~dYv~~gp----vf~T~sk~~ 132 (180)
T PF02581_consen 65 VDLALELGADGVHLGQSDLP---PA----EARKLLGPDKII-GASCHSLEEAREAEELGADYVFLGP----VFPTSSKPG 132 (180)
T ss_dssp HHHHHHCT-SEEEEBTTSSS---HH----HHHHHHTTTSEE-EEEESSHHHHHHHHHCTTSEEEEET----SS--SSSSS
T ss_pred HHHHHhcCCCEEEecccccc---hH----HhhhhcccceEE-EeecCcHHHHHHhhhcCCCEEEECC----ccCCCCCcc
Confidence 44566788999888443221 11 223322 23333 3478899999999999999998862 111211111
Q ss_pred cCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccc
Q 010640 332 VGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSF 382 (505)
Q Consensus 332 ~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~ 382 (505)
...-.+..+ .+.++...+||++-||| ++.++.++..+||++|.+-+.
T Consensus 133 ~~~~g~~~l---~~~~~~~~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi~a 179 (180)
T PF02581_consen 133 APPLGLDGL---REIARASPIPVYALGGI-TPENIPELREAGADGVAVISA 179 (180)
T ss_dssp -TTCHHHHH---HHHHHHTSSCEEEESS---TTTHHHHHHTT-SEEEESHH
T ss_pred ccccCHHHH---HHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEEEEEee
Confidence 111122333 34444566999999999 899999999999999987653
No 319
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=97.04 E-value=0.016 Score=55.40 Aligned_cols=126 Identities=13% Similarity=0.179 Sum_probs=72.3
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcc-c-CCHHHHHHHHHcCCCEEEEc-cCCcceee
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGN-V-VTMYQAQNLIEAGVDGLRVG-MGSGSICT 325 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~-V-~t~e~a~~l~~aGad~I~v~-~g~g~~~~ 325 (505)
..+.++.+.+.|++.+.++.... ......++.+++. +..++... . ...+..+. ...++|++.+. ..+|....
T Consensus 73 ~~~~i~~~~~~g~d~v~vh~~~~--~~~~~~~~~~~~~--~~~~g~~~~~~t~~e~~~~-~~~~~d~i~~~~~~~g~tg~ 147 (220)
T PRK05581 73 PDRYVPDFAKAGADIITFHVEAS--EHIHRLLQLIKSA--GIKAGLVLNPATPLEPLED-VLDLLDLVLLMSVNPGFGGQ 147 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeeccc--hhHHHHHHHHHHc--CCEEEEEECCCCCHHHHHH-HHhhCCEEEEEEECCCCCcc
Confidence 44566777789999998876432 2345556666655 55544421 1 23444443 34468877664 21211110
Q ss_pred cccccccCcChHHHHHHHHHHHhhcC--CcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQSG--VPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~~--ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.+....+.-+.++++.....+ .+|..+|||.. .++.+++..|||+|.+||.+..
T Consensus 148 -----~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~~ 203 (220)
T PRK05581 148 -----KFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAEAGADVFVAGSAVFG 203 (220)
T ss_pred -----cccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHcCCCEEEEChhhhC
Confidence 111112233333333332222 34668899988 7999999999999999999864
No 320
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.00 E-value=0.00028 Score=75.08 Aligned_cols=102 Identities=15% Similarity=0.090 Sum_probs=76.1
Q ss_pred CccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCC
Q 010640 106 VPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPAN 182 (505)
Q Consensus 106 ~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~ 182 (505)
++|.+++ +++++++++.++.+.|.+ ++ +||+|+ +|+++|+||.+|+..... +....++|+. ..++..++
T Consensus 199 ~im~~~~--~~v~~~~~~~eal~~m~~~~~~~lpVVD~---~g~lvGiIt~~Dil~~l~-~~~~ed~~~~--~gv~~~~~ 270 (449)
T TIGR00400 199 SIMRSSV--FSIVGVNDQEEVARLIQKYDFLAVPVVDN---EGRLVGIVTVDDIIDVIQ-SEATEDFYMI--AAVKPLDD 270 (449)
T ss_pred HHhCCCC--eeECCCCCHHHHHHHHHHcCCCEEeEEcC---CCeEEEEEEHHHHHHHHH-hhhHHHHHHh--cCCCCCcc
Confidence 3566666 889999999999999998 65 999998 899999999999963211 1223677775 55544456
Q ss_pred CCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 183 YDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 183 ~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
+.+.+++..+.++++.+|+|. .+.|++| ..++.
T Consensus 271 ~~l~~~~~~~~~~R~~wL~v~---~~~~~~t-~~ii~ 303 (449)
T TIGR00400 271 SYFDTSILVMAKNRIIWLLVL---LVSSTFT-ATIIS 303 (449)
T ss_pred hhhhchHHHHHHhccchHHHH---HHHHHHH-HHHHH
Confidence 778999999999999999885 4455555 44443
No 321
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.00 E-value=0.006 Score=60.22 Aligned_cols=89 Identities=21% Similarity=0.285 Sum_probs=66.9
Q ss_pred HHHHHHHHHhCC-CceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEE
Q 010640 277 IEMIKYAKKTYP-ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVI 355 (505)
Q Consensus 277 ~~~i~~l~~~~~-~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvI 355 (505)
...++.+|+.++ ..+|.+ ++.+.+++..+.++|+|+|.++. . .++.+.++.+..+. ++|+.
T Consensus 169 ~~~v~~~r~~~~~~~~Igv-ev~s~eea~~A~~~gaDyI~ld~-------------~---~~e~l~~~~~~~~~-~ipi~ 230 (268)
T cd01572 169 TEAVRRARAAAPFTLKIEV-EVETLEQLKEALEAGADIIMLDN-------------M---SPEELREAVALLKG-RVLLE 230 (268)
T ss_pred HHHHHHHHHhCCCCCeEEE-EECCHHHHHHHHHcCCCEEEECC-------------c---CHHHHHHHHHHcCC-CCcEE
Confidence 456677788775 344444 88999999999999999997652 0 13444444443322 58999
Q ss_pred ecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 356 ADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 356 a~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
++||| |...+......|+|++.+|++..
T Consensus 231 AiGGI-~~~ni~~~a~~Gvd~Iav~sl~~ 258 (268)
T cd01572 231 ASGGI-TLENIRAYAETGVDYISVGALTH 258 (268)
T ss_pred EECCC-CHHHHHHHHHcCCCEEEEEeeec
Confidence 99999 79999999999999999998753
No 322
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.00 E-value=0.0045 Score=51.99 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=42.1
Q ss_pred CceEecCCCCHHHHHHHHHHCC-CCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKND-VDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~-i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
++.++++++++.++++.|.+++ ...+||+|+ |+++|+|+..|++...
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~ 50 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIP 50 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHH
Confidence 6778899999999999997765 889999998 9999999999998765
No 323
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.00 E-value=0.0039 Score=61.47 Aligned_cols=56 Identities=14% Similarity=0.184 Sum_probs=51.4
Q ss_pred cccccccccCCC-ceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 164 VKIFDYMRDCSS-NVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 164 ~~v~~im~~~~~-~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
.++.++|.+ + ++++.+++++.++++.|.+.+.+.+||+|+ |+++|+||..|+.+..
T Consensus 155 ~~v~~im~~--~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~ 212 (268)
T TIGR00393 155 VKVKDLMQT--TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRAL 212 (268)
T ss_pred hhHHHHhCC--CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHH
Confidence 468899988 7 899999999999999999999999999998 9999999999998764
No 324
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=96.99 E-value=0.0076 Score=59.37 Aligned_cols=90 Identities=19% Similarity=0.241 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhCC-CceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcE
Q 010640 276 QIEMIKYAKKTYP-ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPV 354 (505)
Q Consensus 276 ~~~~i~~l~~~~~-~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipv 354 (505)
....++.+|+.++ ..+|.+ ++.|.++++.+.++|+|+|.+++ ..++.+.++.+..+. .+|+
T Consensus 164 ~~~av~~~r~~~~~~~~Igv-ev~t~eea~~A~~~gaDyI~ld~----------------~~~e~lk~~v~~~~~-~ipi 225 (265)
T TIGR00078 164 IEKAVKRARAAAPFALKIEV-EVESLEEAEEAAEAGADIIMLDN----------------MKPEEIKEAVQLLKG-RVLL 225 (265)
T ss_pred HHHHHHHHHHhCCCCCeEEE-EeCCHHHHHHHHHcCCCEEEECC----------------CCHHHHHHHHHHhcC-CCcE
Confidence 4456777788775 345544 88999999999999999996642 112344444443322 3899
Q ss_pred EecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 355 IADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 355 Ia~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
.++||| +...+......|||++.+|....
T Consensus 226 ~AsGGI-~~~ni~~~a~~Gvd~Isvgait~ 254 (265)
T TIGR00078 226 EASGGI-TLDNLEEYAETGVDVISSGALTH 254 (265)
T ss_pred EEECCC-CHHHHHHHHHcCCCEEEeCHHHc
Confidence 999999 79999999999999999987653
No 325
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=96.98 E-value=0.0021 Score=62.01 Aligned_cols=78 Identities=19% Similarity=0.228 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 300 MYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
.+.++.+.+.|++.+.+.--.|. ..+. .+.+..+.++++ ..++||+++|||++..|+.+++.+||+.|.+
T Consensus 33 ~~~a~~~~~~g~~~i~v~dld~~------~~g~-~~~~~~i~~i~~---~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vil 102 (233)
T PRK00748 33 VAQAKAWEDQGAKWLHLVDLDGA------KAGK-PVNLELIEAIVK---AVDIPVQVGGGIRSLETVEALLDAGVSRVII 102 (233)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcc------ccCC-cccHHHHHHHHH---HCCCCEEEcCCcCCHHHHHHHHHcCCCEEEE
Confidence 45577788899998877411110 1111 134455544444 4579999999999999999999999999999
Q ss_pred cccccCCC
Q 010640 380 GSFLAGST 387 (505)
Q Consensus 380 G~~f~~~~ 387 (505)
|+.++...
T Consensus 103 g~~~l~~~ 110 (233)
T PRK00748 103 GTAAVKNP 110 (233)
T ss_pred CchHHhCH
Confidence 99887543
No 326
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=96.96 E-value=0.0021 Score=64.30 Aligned_cols=60 Identities=12% Similarity=0.112 Sum_probs=54.3
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhhhh
Q 010640 162 NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVERLK 221 (505)
Q Consensus 162 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~~~ 221 (505)
.+..++++|+++.++++++.+.++.++++.+.+++..++||+++ ++++|+|+.+|++...
T Consensus 65 ~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~ 126 (292)
T PRK15094 65 ADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFM 126 (292)
T ss_pred CCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHh
Confidence 35678999998778999999999999999999999999999986 6899999999998654
No 327
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.93 E-value=0.005 Score=51.65 Aligned_cols=46 Identities=22% Similarity=0.244 Sum_probs=42.3
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERL 220 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~ 220 (505)
++.+++++.++.++.+.|.+.+...+||+|+ |+++|+||..|+.+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~ 48 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEI 48 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhh
Confidence 5678899999999999999999999999998 999999999999874
No 328
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=96.92 E-value=0.01 Score=49.05 Aligned_cols=47 Identities=17% Similarity=0.322 Sum_probs=43.2
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
++.++.++.++.++++.|.+.+...+||+|+ ++++|+++..|++...
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~ 50 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY 50 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHh
Confidence 6778899999999999999999999999998 9999999999998754
No 329
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.91 E-value=0.0086 Score=50.43 Aligned_cols=47 Identities=26% Similarity=0.358 Sum_probs=42.8
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
.+.++.+++++.++++.|.+.+...+||+|+ |+++|+||..|+.+..
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~ 49 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQM 49 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHH
Confidence 3567899999999999999999999999998 9999999999998754
No 330
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=96.91 E-value=0.045 Score=51.71 Aligned_cols=118 Identities=24% Similarity=0.228 Sum_probs=71.6
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEE--EcccCCHHHH--HHHHHcCCCEEEEccCCccee
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVI--GGNVVTMYQA--QNLIEAGVDGLRVGMGSGSIC 324 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi--~g~V~t~e~a--~~l~~aGad~I~v~~g~g~~~ 324 (505)
..+..+.+.+.++|.+.++... ..+.++.+++.+ +.+++ + .+.+.... ......|+|++.........
T Consensus 62 ~~~i~~ia~~~~~d~Vqlhg~e-----~~~~~~~l~~~~-~~~~i~~i-~~~~~~~~~~~~~~~~~aD~il~dt~~~~~- 133 (203)
T cd00405 62 LEEILEIAEELGLDVVQLHGDE-----SPEYCAQLRARL-GLPVIKAI-RVKDEEDLEKAAAYAGEVDAILLDSKSGGG- 133 (203)
T ss_pred HHHHHHHHHhcCCCEEEECCCC-----CHHHHHHHHhhc-CCcEEEEE-ecCChhhHHHhhhccccCCEEEEcCCCCCC-
Confidence 4455566677899999986542 134566677654 34444 3 23333332 24455799999774211100
Q ss_pred ecccccccCcC-hHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEeccccc
Q 010640 325 TTQEVCAVGRG-QATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMGSFLA 384 (505)
Q Consensus 325 ~~~~~~g~g~p-~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G~~f~ 384 (505)
..|.|.+ ..+.+. +.. ..+|++++||| |+..+..++..| +++|-++|.+.
T Consensus 134 ----~Gg~g~~~~~~~l~---~~~--~~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie 185 (203)
T cd00405 134 ----GGGTGKTFDWSLLR---GLA--SRKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGVE 185 (203)
T ss_pred ----CCCCcceEChHHhh---ccc--cCCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCccc
Confidence 0011111 112222 221 35899999999 999999999999 99999999874
No 331
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.90 E-value=0.0047 Score=52.62 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=44.1
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++.++.++.++.++.+.|.+.+.+.+||+|+ |+++|+|+..|+++...
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~ 51 (124)
T cd04600 3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHAR 51 (124)
T ss_pred CcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhc
Confidence 7788999999999999999999999999998 99999999999987543
No 332
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=96.89 E-value=0.0023 Score=55.24 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=43.9
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
++.+++++.++.++++.|.++++..+||+|+ ++++|+||.+|++...
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~ 50 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSL 50 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHH
Confidence 7889999999999999999999999999998 9999999999998754
No 333
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.89 E-value=0.0024 Score=54.27 Aligned_cols=48 Identities=23% Similarity=0.226 Sum_probs=44.4
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++.++.+++++.++++.|.++++..+||+|+ ++++|+||..|+.+...
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~ 50 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASI 50 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHH
Confidence 6788999999999999999999999999998 99999999999988754
No 334
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=96.83 E-value=0.0076 Score=50.66 Aligned_cols=48 Identities=17% Similarity=0.156 Sum_probs=43.7
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++.++.+++++.++.+.|.+.+...+||+|+ |+++|+++..|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~ 50 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALE 50 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHh
Confidence 5678899999999999999999999999998 99999999999987653
No 335
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=96.83 E-value=0.0035 Score=68.96 Aligned_cols=57 Identities=14% Similarity=0.274 Sum_probs=52.4
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
..+++++|++ +..++++++++.++.+.|.+++.+.+||+|+ ++++|+||.+|+.+..
T Consensus 446 ~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l 503 (574)
T PRK01862 446 TTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDL 503 (574)
T ss_pred hCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHh
Confidence 4578999998 8899999999999999999999999999999 9999999999998753
No 336
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.83 E-value=0.0021 Score=56.33 Aligned_cols=48 Identities=25% Similarity=0.299 Sum_probs=44.3
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++.++.+++++.++++.|.+.+...+||+|+ |+++|+||..|+++...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~ 50 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEF 50 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhh
Confidence 5778899999999999999999999999999 99999999999998653
No 337
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=96.82 E-value=0.014 Score=54.89 Aligned_cols=128 Identities=18% Similarity=0.214 Sum_probs=85.9
Q ss_pred eEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEc-ccCCH--HHHHHHHHcCCCEE
Q 010640 238 MVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG-NVVTM--YQAQNLIEAGVDGL 314 (505)
Q Consensus 238 ~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g-~V~t~--e~a~~l~~aGad~I 314 (505)
.++.+.-+.++..+.++.+.+. ++++.+..+.- ...-.+.++.+++.+++.++++. .+.+. ..++.+.++|+|++
T Consensus 4 ~~a~d~~~~~~~~~~~~~l~~~-i~~ieig~~~~-~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i 81 (202)
T cd04726 4 QVALDLLDLEEALELAKKVPDG-VDIIEAGTPLI-KSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIV 81 (202)
T ss_pred EEEEcCCCHHHHHHHHHHhhhc-CCEEEcCCHHH-HHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEE
Confidence 3444444455677778888887 99998843210 01115778888887767888663 34444 35788999999999
Q ss_pred EEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEec-CCCCCHHHHHHHHHhCCCEEEeccc
Q 010640 315 RVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIAD-GGISNSGHIVKALVLGASTVMMGSF 382 (505)
Q Consensus 315 ~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~-GGI~~~~di~kal~lGA~~V~~G~~ 382 (505)
.+-. .+....+.++.+.+++.+++++.+ =+..|+.++.+++..|++.|.++..
T Consensus 82 ~~h~---------------~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~ 135 (202)
T cd04726 82 TVLG---------------AAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRG 135 (202)
T ss_pred EEEe---------------eCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCc
Confidence 6521 111123344556666778888765 6899999999999999999988643
No 338
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=96.79 E-value=0.0035 Score=60.52 Aligned_cols=78 Identities=26% Similarity=0.294 Sum_probs=54.4
Q ss_pred CHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 299 TMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 299 t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
..+.|+.+.+.|+|.+.+.--.+ ...+.+ .....+..+ ++..++|+++.|||++.+++.+++..|||.|+
T Consensus 31 p~~~a~~~~~~g~d~l~v~dl~~------~~~~~~-~~~~~i~~i---~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vv 100 (234)
T cd04732 31 PVEVAKKWEEAGAKWLHVVDLDG------AKGGEP-VNLELIEEI---VKAVGIPVQVGGGIRSLEDIERLLDLGVSRVI 100 (234)
T ss_pred HHHHHHHHHHcCCCEEEEECCCc------cccCCC-CCHHHHHHH---HHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEE
Confidence 34677888889999998741100 011111 123334333 33457999999999999999999999999999
Q ss_pred ecccccCC
Q 010640 379 MGSFLAGS 386 (505)
Q Consensus 379 ~G~~f~~~ 386 (505)
+|+..+..
T Consensus 101 igs~~l~d 108 (234)
T cd04732 101 IGTAAVKN 108 (234)
T ss_pred ECchHHhC
Confidence 99987643
No 339
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=96.79 E-value=0.0077 Score=56.56 Aligned_cols=67 Identities=22% Similarity=0.236 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCccEE-EEeC-------CCCCc-hhHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEEc
Q 010640 250 KERLEHLVKAGVNVV-VLDS-------SQGNS-SFQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 250 ~e~~~~lieaGad~I-~i~~-------~~g~~-~~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v~ 317 (505)
.+++..+.++|+-++ .++. ..|.. ......++.+-+.. .+||+++ .+++.-+|+-|...|+|+|+-|
T Consensus 30 ~EQA~IAE~aGAvAVMaLervPaDiR~aGGVaRMaDp~~i~eim~aV-sIPVMAKvRIGH~~EA~iLealgVD~IDES 106 (296)
T COG0214 30 AEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIEEIMDAV-SIPVMAKVRIGHFVEAQILEALGVDMIDES 106 (296)
T ss_pred HHHHHHHHhcCceeEeehhhCcHHHHhccCccccCCHHHHHHHHHhc-ccceeeeeecchhHHHHHHHHhCCCccccc
Confidence 355666666775444 3321 12211 12345666676766 7999997 5678999999999999999865
No 340
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.78 E-value=0.0032 Score=52.39 Aligned_cols=47 Identities=11% Similarity=0.314 Sum_probs=43.5
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
+++++.++.++.++++.|.+++...+||+|+ |+++|++|..|+++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~ 50 (110)
T cd04605 3 PVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAV 50 (110)
T ss_pred CCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHH
Confidence 6788999999999999999999999999998 9999999999998754
No 341
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.78 E-value=0.012 Score=48.88 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=43.3
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
++.+++.+.++.++.+.|.+.+...+||+|+|+++|+|+..|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~~~~ 49 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVEKAL 49 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHHHHH
Confidence 67889999999999999999999999999989999999999998754
No 342
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.77 E-value=0.0012 Score=56.19 Aligned_cols=49 Identities=20% Similarity=0.182 Sum_probs=42.1
Q ss_pred cCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccc
Q 010640 104 RRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWE 157 (505)
Q Consensus 104 ~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~ 157 (505)
..++|..++ .++++++++.++++.|.+ ++ +||+|+ +++++|+|+.+|++
T Consensus 60 v~dim~~~~--~~v~~~~~l~~a~~~~~~~~~~~lpVvd~---~~~l~Givt~~dl~ 111 (113)
T cd04597 60 VRDVINRKP--VTARPNDPLREALNLMHEHNIRTLPVVDD---DGTPAGIITLLDLA 111 (113)
T ss_pred HHHhcCCCC--CEECCcCcHHHHHHHHHHcCCCEEEEECC---CCeEEEEEEHHHhh
Confidence 445666677 889999999999999987 65 999997 89999999999884
No 343
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.75 E-value=0.0042 Score=60.38 Aligned_cols=76 Identities=28% Similarity=0.395 Sum_probs=52.6
Q ss_pred HHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 300 MYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
.+.++.+.+.|++.+.+---.+ ...+. ......+ .+.++..++|++..|||++..|+..++.+||+.|.+
T Consensus 35 ~e~a~~~~~~G~~~l~i~dl~~------~~~~~-~~~~~~i---~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~i 104 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLVDLDG------AFEGE-RKNAEAI---EKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVIL 104 (241)
T ss_pred HHHHHHHHHcCCCEEEEEechh------hhcCC-cccHHHH---HHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEE
Confidence 3566777788999885521000 00111 1233334 445556789999999999999999999999999999
Q ss_pred cccccC
Q 010640 380 GSFLAG 385 (505)
Q Consensus 380 G~~f~~ 385 (505)
|+..+.
T Consensus 105 Gs~~~~ 110 (241)
T PRK13585 105 GTAAVE 110 (241)
T ss_pred ChHHhh
Confidence 997653
No 344
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.75 E-value=0.0022 Score=55.13 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=43.6
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
.+.++++++++.++++.|.+++...+||+|+ |+++|+|+..|+++..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~ 49 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLL 49 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhh
Confidence 5778999999999999999999999999998 9999999999998865
No 345
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=96.75 E-value=0.014 Score=59.98 Aligned_cols=114 Identities=18% Similarity=0.219 Sum_probs=69.9
Q ss_pred HHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE--cccCCHHHHHHHHHcCCCEEEEccCCcceeecc
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG--GNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQ 327 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~--g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~ 327 (505)
.+.++.+.+.+.+.+ ...-..+.++.+++. .+.+.+ +.....+.++.++++|+|+|.+.. ......
T Consensus 102 a~aa~~~~e~~~~~~-------~p~l~~~ii~~vr~a--~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihg--rt~~q~- 169 (369)
T TIGR01304 102 AAATRLLQELHAAPL-------KPELLGERIAEVRDS--GVITAVRVSPQNAREIAPIVVKAGADLLVIQG--TLVSAE- 169 (369)
T ss_pred HHHHHHHHHcCCCcc-------ChHHHHHHHHHHHhc--ceEEEEecCCcCHHHHHHHHHHCCCCEEEEec--cchhhh-
Confidence 344555555555543 223345666777775 333332 223456788999999999998741 100000
Q ss_pred cccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecc
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGS 381 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~ 381 (505)
-..+.+. .. .+.+.++..++|||+ |++.+..++.+++..|||+|++|+
T Consensus 170 ~~sg~~~--p~---~l~~~i~~~~IPVI~-G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 170 HVSTSGE--PL---NLKEFIGELDVPVIA-GGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred ccCCCCC--HH---HHHHHHHHCCCCEEE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 0011111 12 234444556899998 999999999999999999999774
No 346
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.74 E-value=0.0052 Score=51.40 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=42.4
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERL 220 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~ 220 (505)
++.++.+++++.++++.|.+.+...+||+|+ ++++|++|..|+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~ 48 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSY 48 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHh
Confidence 4678899999999999999999999999998 999999999999874
No 347
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=96.73 E-value=0.07 Score=55.32 Aligned_cols=116 Identities=18% Similarity=0.151 Sum_probs=77.9
Q ss_pred HHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE--cccCCHH-HHHHHHHcCCCEEEEcc--CCcceeecc
Q 010640 253 LEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG--GNVVTMY-QAQNLIEAGVDGLRVGM--GSGSICTTQ 327 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~--g~V~t~e-~a~~l~~aGad~I~v~~--g~g~~~~~~ 327 (505)
++.+.++|+|.+.+|...+ .......++.+++. ++.+++ =++.++. ..+.+ ..++|.+.+.. .++ +
T Consensus 243 v~~~a~aGAD~vTVH~ea~-~~ti~~ai~~akk~--GikvgVD~lnp~tp~e~i~~l-~~~vD~Vllht~vdp~----~- 313 (391)
T PRK13307 243 ARMAADATADAVVISGLAP-ISTIEKAIHEAQKT--GIYSILDMLNVEDPVKLLESL-KVKPDVVELHRGIDEE----G- 313 (391)
T ss_pred HHHHHhcCCCEEEEeccCC-HHHHHHHHHHHHHc--CCEEEEEEcCCCCHHHHHHHh-hCCCCEEEEccccCCC----c-
Confidence 7778899999999987544 22355566666665 555544 2444544 44444 78999997742 111 0
Q ss_pred cccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
..|...-+.++++. ..+++|..+|||. .+++..++.+||+.+.+|+.+..
T Consensus 314 -----~~~~~~kI~~ikk~--~~~~~I~VdGGI~-~eti~~l~~aGADivVVGsaIf~ 363 (391)
T PRK13307 314 -----TEHAWGNIKEIKKA--GGKILVAVAGGVR-VENVEEALKAGADILVVGRAITK 363 (391)
T ss_pred -----ccchHHHHHHHHHh--CCCCcEEEECCcC-HHHHHHHHHcCCCEEEEeHHHhC
Confidence 01333445555443 2468999999998 78899999999999999998643
No 348
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=96.73 E-value=0.03 Score=52.62 Aligned_cols=128 Identities=18% Similarity=0.215 Sum_probs=90.9
Q ss_pred ceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE--cccCC-HHHHHHHHHcCCCE
Q 010640 237 WMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG--GNVVT-MYQAQNLIEAGVDG 313 (505)
Q Consensus 237 l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~--g~V~t-~e~a~~l~~aGad~ 313 (505)
++++.+..+.++..+.++.+.+. ++++++.++.=...+ .+.++.+|+.||+.+|++ |+... .-.++.+.++|+|.
T Consensus 6 LQvALD~~~l~~Ai~~a~~v~~~-~diiEvGTpLik~eG-~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~ 83 (217)
T COG0269 6 LQVALDLLDLEEAIEIAEEVADY-VDIIEVGTPLIKAEG-MRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADW 83 (217)
T ss_pred eEeeecccCHHHHHHHHHHhhhc-ceEEEeCcHHHHHhh-HHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCE
Confidence 45655554444555556666565 888988553211122 478889999999998887 33333 34678899999999
Q ss_pred EEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecC-CCCCHHHHHHHHH-hCCCEEEecc
Q 010640 314 LRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADG-GISNSGHIVKALV-LGASTVMMGS 381 (505)
Q Consensus 314 I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~G-GI~~~~di~kal~-lGA~~V~~G~ 381 (505)
+.|.. .....++..+.+.++++++.+..+= |..++.+..+=+. +|.+.+.+=+
T Consensus 84 ~tV~g---------------~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~ 138 (217)
T COG0269 84 VTVLG---------------AADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHR 138 (217)
T ss_pred EEEEe---------------cCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEe
Confidence 97751 2345667777888888888887774 9999999999998 9998876543
No 349
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.73 E-value=0.002 Score=55.14 Aligned_cols=47 Identities=17% Similarity=0.123 Sum_probs=40.3
Q ss_pred ccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccc
Q 010640 107 PIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWEN 158 (505)
Q Consensus 107 ~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~ 158 (505)
.|..++ .+++++.++.++++.|.+ +. +||+|+ +++++|+||.+|++.
T Consensus 73 ~~~~~~--~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~~~vGiit~~di~~ 122 (123)
T cd04627 73 IGTSDV--ISINGDQPLIDALHLMHNEGISSVAVVDN---QGNLIGNISVTDVRL 122 (123)
T ss_pred cCcCCc--eEeCCCCCHHHHHHHHHHcCCceEEEECC---CCcEEEEEeHHHhhc
Confidence 344456 899999999999999998 65 999997 789999999999863
No 350
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=96.72 E-value=0.07 Score=51.13 Aligned_cols=127 Identities=13% Similarity=0.138 Sum_probs=80.9
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEE-ccCCcceeecc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRV-GMGSGSICTTQ 327 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v-~~g~g~~~~~~ 327 (505)
....++.+.++|++.+.+|.... ......++.+|+.--..-+....-+..+....++. -+|.|.+ +..+|....
T Consensus 74 P~~~i~~~~~~gad~I~~H~Ea~--~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~-~vD~VlvMtV~PGf~GQ-- 148 (223)
T PRK08745 74 VDRIVPDFADAGATTISFHPEAS--RHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLP-ELDLVLVMSVNPGFGGQ-- 148 (223)
T ss_pred HHHHHHHHHHhCCCEEEEcccCc--ccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHh-hcCEEEEEEECCCCCCc--
Confidence 55678899999999999987532 23456777787772122333333355666666655 4787765 433332111
Q ss_pred cccccCcChHHHHHHHHHHHhhcC--CcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQSG--VPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~~--ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
.+ -..++.-+.++++...+.+ ..|-.||||. ...+.++..+|||.+.+|+.+-
T Consensus 149 ~f---i~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~aGaDi~V~GSaiF 203 (223)
T PRK08745 149 AF---IPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAAAGADTFVAGSAIF 203 (223)
T ss_pred cc---cHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEChhhh
Confidence 11 1123445555555554433 6699999986 6788899999999999999853
No 351
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=96.72 E-value=0.07 Score=51.16 Aligned_cols=126 Identities=14% Similarity=0.075 Sum_probs=81.6
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCce----EEEcccCCHHHHHHHHHcCCCEEEE-ccCCcc
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELD----VIGGNVVTMYQAQNLIEAGVDGLRV-GMGSGS 322 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~----Vi~g~V~t~e~a~~l~~aGad~I~v-~~g~g~ 322 (505)
+..+.++.+.++|+|.+.+|.... ......++++|+. +.+ +....-+..+....++.. +|.|-+ +..+|.
T Consensus 79 ~P~~~i~~~~~aGad~It~H~Ea~--~~~~~~l~~Ik~~--g~~~kaGlalnP~Tp~~~i~~~l~~-vD~VLiMtV~PGf 153 (228)
T PRK08091 79 DQFEVAKACVAAGADIVTLQVEQT--HDLALTIEWLAKQ--KTTVLIGLCLCPETPISLLEPYLDQ-IDLIQILTLDPRT 153 (228)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCc--ccHHHHHHHHHHC--CCCceEEEEECCCCCHHHHHHHHhh-cCEEEEEEECCCC
Confidence 356788999999999999987532 2345777888887 442 222333456666666654 887765 433332
Q ss_pred eeecccccccCcChHHHHHHHHHHHhhcC--CcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 323 ICTTQEVCAVGRGQATAVYKVSSIAAQSG--VPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 323 ~~~~~~~~g~g~p~~~~l~~v~~~~~~~~--ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
... .+ -...+.-+.++++..++.+ ..|-.||||. ...+.++.++|||.+.+|+.+-
T Consensus 154 gGQ--~f---~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~aGaD~~V~GSalF 211 (228)
T PRK08091 154 GTK--AP---SDLILDRVIQVENRLGNRRVEKLISIDGSMT-LELASYLKQHQIDWVVSGSALF 211 (228)
T ss_pred CCc--cc---cHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHCCCCEEEEChhhh
Confidence 111 11 0123444555555554443 6699999986 6688899999999999998853
No 352
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.71 E-value=0.004 Score=51.90 Aligned_cols=48 Identities=15% Similarity=0.355 Sum_probs=43.7
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++.++.++.++.++++.|.+.+...+||+|+ ++++|+++..|+++...
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~ 50 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVA 50 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHh
Confidence 5678899999999999999999999999998 99999999999987653
No 353
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.70 E-value=0.0039 Score=52.10 Aligned_cols=48 Identities=19% Similarity=0.322 Sum_probs=43.7
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++.+++++.++.++.+.|.+.+...+||+|+ |+++|+||..|+++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~ 50 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVA 50 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHh
Confidence 5678899999999999999999999999998 99999999999987643
No 354
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=96.70 E-value=0.12 Score=50.53 Aligned_cols=162 Identities=19% Similarity=0.171 Sum_probs=94.1
Q ss_pred EecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHH
Q 010640 178 SVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHL 256 (505)
Q Consensus 178 ~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~l 256 (505)
.+..+.++.++++++.+.+-. + +..+++.|..+.+.... ....++.+
T Consensus 71 AL~~g~t~~~~lel~~~~r~~------~~~~Pivlm~Y~Npi~~~G--------------------------ie~F~~~~ 118 (265)
T COG0159 71 ALAAGVTLEDTLELVEEIRAK------GVKVPIVLMTYYNPIFNYG--------------------------IEKFLRRA 118 (265)
T ss_pred HHHCCCCHHHHHHHHHHHHhc------CCCCCEEEEEeccHHHHhh--------------------------HHHHHHHH
Confidence 345677888888888874421 1 33455666655544321 34567888
Q ss_pred HHcCccEEEE-eCCCCCchhHHHHHHHHHHhCCCc--eEEEcccCCHHHHHHHHHcCCCEEEE-ccCCcceeeccccccc
Q 010640 257 VKAGVNVVVL-DSSQGNSSFQIEMIKYAKKTYPEL--DVIGGNVVTMYQAQNLIEAGVDGLRV-GMGSGSICTTQEVCAV 332 (505)
Q Consensus 257 ieaGad~I~i-~~~~g~~~~~~~~i~~l~~~~~~~--~Vi~g~V~t~e~a~~l~~aGad~I~v-~~g~g~~~~~~~~~g~ 332 (505)
.++|+|-+.+ |.+...+. +..+..+ .+ ++ ..++....+.+..+...+..-.++.. +.-| .+|.
T Consensus 119 ~~~GvdGlivpDLP~ee~~---~~~~~~~-~~-gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~G--------vTG~ 185 (265)
T COG0159 119 KEAGVDGLLVPDLPPEESD---ELLKAAE-KH-GIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMG--------VTGA 185 (265)
T ss_pred HHcCCCEEEeCCCChHHHH---HHHHHHH-Hc-CCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeccc--------ccCC
Confidence 8999999866 44433222 2222222 32 22 22333455667777777766555544 3211 1222
Q ss_pred CcChHHHHHH-HHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 333 GRGQATAVYK-VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 333 g~p~~~~l~~-v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
-.+....+.+ +.+..+..++||...=||.+++++.+.... ||+|.+||+|..
T Consensus 186 ~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV~ 238 (265)
T COG0159 186 RNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAIVK 238 (265)
T ss_pred CcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHHHH
Confidence 2221111222 222223347999995599999999999999 999999999964
No 355
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=96.68 E-value=0.046 Score=55.50 Aligned_cols=70 Identities=24% Similarity=0.408 Sum_probs=56.8
Q ss_pred HHHHHHHHHHcCccEEEEeCCC----CCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHH-cCCCEEEEcc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQ----GNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIE-AGVDGLRVGM 318 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~----g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~-aGad~I~v~~ 318 (505)
..+.++.+.++|++.+.||.-. +.....++.|+.+++.++++||++ |+|.|.++++...+ .|+|++.++-
T Consensus 154 ~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigR 229 (323)
T COG0042 154 ALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGR 229 (323)
T ss_pred HHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcH
Confidence 5577888888999999998732 222356899999999996699988 78899999998776 6899999873
No 356
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=96.68 E-value=0.015 Score=48.24 Aligned_cols=48 Identities=23% Similarity=0.429 Sum_probs=43.4
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~ 222 (505)
++.+++++.++.++++.|.+.+...+||+|+++++|+++..|+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~~~~~ 49 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDILRLLA 49 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHHHHHh
Confidence 567889999999999999999999999998899999999999987653
No 357
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=96.66 E-value=0.022 Score=47.19 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=43.3
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
++.++..++++.++++.|.+.+.+.+||+|+++++|+++..|+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~~~~ 48 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAHAI 48 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHH
Confidence 67788999999999999999999999999889999999999999864
No 358
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.66 E-value=0.0042 Score=53.45 Aligned_cols=47 Identities=21% Similarity=0.368 Sum_probs=43.1
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
++.++.+++++.+++++|.+.+...+||+|+ |+++|+||..|+....
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~ 49 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFV 49 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHH
Confidence 5678899999999999999999999999998 9999999999998653
No 359
>PRK08227 autoinducer 2 aldolase; Validated
Probab=96.65 E-value=0.026 Score=55.38 Aligned_cols=115 Identities=20% Similarity=0.211 Sum_probs=75.6
Q ss_pred HHHHHHHHcCccEEEEeCCCCCc--hhHHHHHHHHHH---hCCCceEEEc-----ccCC-----HHHHHHHHHcCCCEEE
Q 010640 251 ERLEHLVKAGVNVVVLDSSQGNS--SFQIEMIKYAKK---TYPELDVIGG-----NVVT-----MYQAQNLIEAGVDGLR 315 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~~g~~--~~~~~~i~~l~~---~~~~~~Vi~g-----~V~t-----~e~a~~l~~aGad~I~ 315 (505)
..++.+++.|+|++.++...|.. ..++..+..+.+ .| ++|+++- .+.+ ...++.+.+.|+|+|+
T Consensus 98 ~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~-G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK 176 (264)
T PRK08227 98 VDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRY-GMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIK 176 (264)
T ss_pred ecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHh-CCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEe
Confidence 34677889999999998766633 233433333333 33 7888771 1122 2246888899999998
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCH-H----HHHHHHHhCCCEEEecccccCC
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNS-G----HIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~-~----di~kal~lGA~~V~~G~~f~~~ 386 (505)
+-- |. +.+.++.+. ..+||+.+||=... . .+..|+..||.+|.+|+-...+
T Consensus 177 ~~y----------------~~-~~f~~vv~a---~~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~ 232 (264)
T PRK08227 177 TYY----------------VE-EGFERITAG---CPVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQS 232 (264)
T ss_pred cCC----------------CH-HHHHHHHHc---CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhcc
Confidence 741 11 445555553 45899999998853 2 3556889999999999875443
No 360
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=96.64 E-value=0.018 Score=56.96 Aligned_cols=89 Identities=22% Similarity=0.286 Sum_probs=65.3
Q ss_pred HHHHHHHHhCC-CceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhh-cCCcEE
Q 010640 278 EMIKYAKKTYP-ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQ-SGVPVI 355 (505)
Q Consensus 278 ~~i~~l~~~~~-~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~-~~ipvI 355 (505)
..++.+|+..+ ..++.+ ++.|.+++..+.++|+|+|.++. . .++.+.++.+..+. .++|+.
T Consensus 169 ~~v~~~r~~~~~~~~I~v-ev~t~eea~~A~~~gaD~I~ld~-------------~---~~e~l~~~v~~i~~~~~i~i~ 231 (269)
T cd01568 169 EAVKRARAAAPFEKKIEV-EVETLEEAEEALEAGADIIMLDN-------------M---SPEELKEAVKLLKGLPRVLLE 231 (269)
T ss_pred HHHHHHHHhCCCCCeEEE-ecCCHHHHHHHHHcCCCEEEECC-------------C---CHHHHHHHHHHhccCCCeEEE
Confidence 56677888875 455555 88999999999999999997752 0 11333333333321 258999
Q ss_pred ecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 356 ADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 356 a~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
++||| |...+.+....|||++.+|+.+.
T Consensus 232 asGGI-t~~ni~~~a~~Gad~Isvgal~~ 259 (269)
T cd01568 232 ASGGI-TLENIRAYAETGVDVISTGALTH 259 (269)
T ss_pred EECCC-CHHHHHHHHHcCCCEEEEcHHHc
Confidence 99997 58899999999999999997653
No 361
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=96.63 E-value=0.0032 Score=67.15 Aligned_cols=57 Identities=19% Similarity=0.228 Sum_probs=52.7
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
..++.++|.+ ++.++.+++++.++++.|.+.+...+||+|+ ++++|+||.+|+++..
T Consensus 334 ~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~ 391 (454)
T TIGR01137 334 NATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSAL 391 (454)
T ss_pred cCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHH
Confidence 4578999998 9999999999999999999999999999998 9999999999998854
No 362
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.63 E-value=0.0051 Score=52.27 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=43.4
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
++++++++.++.++.+.|.+.++..+||+|+|+++|++|..|+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~ 48 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYLKAI 48 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHHHHH
Confidence 57789999999999999999999999999999999999999998754
No 363
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.63 E-value=0.0041 Score=53.52 Aligned_cols=45 Identities=18% Similarity=0.331 Sum_probs=41.9
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
++.++..++++.++++.|.+.+.+.+||+|+ |+++|+++..|+..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~ 47 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLG 47 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhh
Confidence 5678899999999999999999999999998 99999999999986
No 364
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.63 E-value=0.0035 Score=53.22 Aligned_cols=48 Identities=15% Similarity=0.329 Sum_probs=44.1
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++.++.+++++.++.+.|.+.+.+.+||+|+ |+++|+++..|+++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~ 50 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAAL 50 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhc
Confidence 6778999999999999999999999999999 99999999999987653
No 365
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.63 E-value=0.0069 Score=63.94 Aligned_cols=129 Identities=12% Similarity=0.101 Sum_probs=82.5
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCc--cCCCCcceEE
Q 010640 164 VKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGT--VGPDGKWMVG 240 (505)
Q Consensus 164 ~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~--~d~~~~l~v~ 240 (505)
+++.++++. +++++++..++.+|...|.+.+++.+.|+++ +.+.||||++|+....-..-..+.. ..--..-++.
T Consensus 149 trv~~~~~~--~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT~p~~s 226 (610)
T COG2905 149 TRVGEVKTL--PAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKTQKVSEVMTSPVIS 226 (610)
T ss_pred HHHHHHhcC--CCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCcccchhhhhccCcee
Confidence 478899998 9999999999999999999999998888888 9999999999999886542110000 0000000111
Q ss_pred EeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEccc
Q 010640 241 AAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNV 297 (505)
Q Consensus 241 a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V 297 (505)
+.......+..-.+.+.++.=+.|. ..|...++++..+-++...++..+.+..+
T Consensus 227 --vd~~~~~feAml~m~r~~I~hl~V~-e~gq~~Gilt~~dIl~l~s~~~~vl~~~i 280 (610)
T COG2905 227 --VDRGDFLFEAMLMMLRNRIKHLPVT-EDGQPLGILTLTDILRLFSQNSIVLVKRI 280 (610)
T ss_pred --ecCcchHHHHHHHHHHhCCceeeee-cCCeeeEEeeHHHHHHhhCCCceeehHHh
Confidence 1122335566666677777766552 23444455555555544433444444433
No 366
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=96.62 E-value=0.094 Score=51.17 Aligned_cols=173 Identities=17% Similarity=0.225 Sum_probs=94.9
Q ss_pred HHHHHHHCCCCeeEEeeC-Ceee----eEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCcc
Q 010640 188 IDEVLEKNDVDFVVLEKD-GERL----DVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVN 262 (505)
Q Consensus 188 a~~~l~~~~i~~lpVvd~-g~l~----GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad 262 (505)
=++.+++.+++.+.|-|. +.+. +-.|..-+-.... .....-.+++|+++-. .+..+.+..+...|++
T Consensus 33 ea~~l~~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~-------~v~~~~~~p~GvnvL~-nd~~aal~iA~a~ga~ 104 (257)
T TIGR00259 33 DAMALEEGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAG-------QLKSDVSIPLGINVLR-NDAVAALAIAMAVGAK 104 (257)
T ss_pred HHHHHHhCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHH-------HHHHhcCCCeeeeeec-CCCHHHHHHHHHhCCC
Confidence 356788899999988765 4322 1111111111100 0011223457776632 2345566666778999
Q ss_pred EEEEeC-------CCCCchhHHHHHHHHHHhC-CCceEEEccc----------CCH-HHHHHHHHcC-CCEEEEccCCcc
Q 010640 263 VVVLDS-------SQGNSSFQIEMIKYAKKTY-PELDVIGGNV----------VTM-YQAQNLIEAG-VDGLRVGMGSGS 322 (505)
Q Consensus 263 ~I~i~~-------~~g~~~~~~~~i~~l~~~~-~~~~Vi~g~V----------~t~-e~a~~l~~aG-ad~I~v~~g~g~ 322 (505)
+|=++. .+|.-+.....+-+.|+.. .++.|.. +| .+. +.++.+...| +|+++|+..+.+
T Consensus 105 FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~a-dV~~kh~~~l~~~~~~e~a~~~~~~~~aDavivtG~~TG 183 (257)
T TIGR00259 105 FIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILA-DIVVKHAVHLGNRDLESIALDTVERGLADAVILSGKTTG 183 (257)
T ss_pred EEEEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEe-ceeecccCcCCCCCHHHHHHHHHHhcCCCEEEECcCCCC
Confidence 986532 3333222333333444443 1344443 21 133 4567766666 999999732111
Q ss_pred eeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 323 ICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 323 ~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
. .+..+.+..+++.. .+.|++.+||+ ++..+.+++.. |+++.+||.|
T Consensus 184 ----~------~~d~~~l~~vr~~~--~~~PvllggGv-t~eNv~e~l~~-adGviVgS~~ 230 (257)
T TIGR00259 184 ----T------EVDLELLKLAKETV--KDTPVLAGSGV-NLENVEELLSI-ADGVIVATTI 230 (257)
T ss_pred ----C------CCCHHHHHHHHhcc--CCCeEEEECCC-CHHHHHHHHhh-CCEEEECCCc
Confidence 0 12233344443322 24899998885 78899999987 9999999988
No 367
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=96.62 E-value=0.12 Score=50.53 Aligned_cols=123 Identities=19% Similarity=0.208 Sum_probs=71.2
Q ss_pred HHHHHHHHHHcCccEEEE-eCCCCCchhHHHHHHHHHHhCCCceE--EEcccCCHHHHHHHHHcCCCEEEE-ccCCccee
Q 010640 249 DKERLEHLVKAGVNVVVL-DSSQGNSSFQIEMIKYAKKTYPELDV--IGGNVVTMYQAQNLIEAGVDGLRV-GMGSGSIC 324 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i-~~~~g~~~~~~~~i~~l~~~~~~~~V--i~g~V~t~e~a~~l~~aGad~I~v-~~g~g~~~ 324 (505)
..+.++.+.++|++.+.+ |.+.. ...++...+++. ++.. ++....+.+..+.+.+..-.+|.+ +.-|
T Consensus 104 ~e~F~~~~~~aGvdGlIipDLP~e---e~~~~~~~~~~~--gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~G---- 174 (259)
T PF00290_consen 104 IERFFKEAKEAGVDGLIIPDLPPE---ESEELREAAKKH--GLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMG---- 174 (259)
T ss_dssp HHHHHHHHHHHTEEEEEETTSBGG---GHHHHHHHHHHT--T-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSS----
T ss_pred hHHHHHHHHHcCCCEEEEcCCChH---HHHHHHHHHHHc--CCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCC----
Confidence 345678888999999877 33322 223333333333 3322 334556778888888877788875 4211
Q ss_pred ecccccccCcChHHHHHH-HHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 325 TTQEVCAVGRGQATAVYK-VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 325 ~~~~~~g~g~p~~~~l~~-v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.+|........+.+ +....+..++||...=||.+++++.+.. .|||+|.+||+|..
T Consensus 175 ----vTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~ 231 (259)
T PF00290_consen 175 ----VTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVK 231 (259)
T ss_dssp ----SSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHH
T ss_pred ----CCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH-ccCCEEEECHHHHH
Confidence 11111111122222 2222333469999966999999998888 99999999999964
No 368
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.61 E-value=0.0035 Score=54.59 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=44.2
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++.++.+++++.++++.|.+.+.+++||+|+ ++++|+|++.|+++...
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~ 51 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAE 51 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhc
Confidence 6788999999999999999999999999999 99999999999987643
No 369
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.60 E-value=0.0043 Score=51.64 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=43.1
Q ss_pred CCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhh
Q 010640 174 SSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERL 220 (505)
Q Consensus 174 ~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~ 220 (505)
+++.++.+++++.++.+.|.+.+...+||+|+ |+++|+|+..|++..
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~ 49 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK 49 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcc
Confidence 47889999999999999999999999999998 999999999999753
No 370
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.58 E-value=0.0043 Score=52.70 Aligned_cols=46 Identities=15% Similarity=0.304 Sum_probs=42.9
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERL 220 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~ 220 (505)
++.++.+++++.++++.|.+.+...+||+|+ |+++|+++..|+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~ 48 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRA 48 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhh
Confidence 5778999999999999999999999999998 999999999999875
No 371
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=96.58 E-value=0.074 Score=53.78 Aligned_cols=69 Identities=20% Similarity=0.307 Sum_probs=54.2
Q ss_pred cHHHHHHHHHHcCccEEEEeCCC---CCchh--HHHHHHHHHHhCCCceEEE-cccCCHHHHHHHH-HcCCCEEEEc
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQ---GNSSF--QIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLI-EAGVDGLRVG 317 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~---g~~~~--~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~-~aGad~I~v~ 317 (505)
+..+.++.+.++|++.+.+|... +.+.. .++.++.+++.. ++||+. |++.|++++..+. ..|+|+|.++
T Consensus 149 ~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~-~iPVi~nGdI~t~~da~~~l~~~g~DgVmiG 224 (312)
T PRK10550 149 RKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRL-TIPVIANGEIWDWQSAQQCMAITGCDAVMIG 224 (312)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhc-CCcEEEeCCcCCHHHHHHHHhccCCCEEEEc
Confidence 35678888889999999997632 22211 367889999886 789877 8999999999976 5899999886
No 372
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.56 E-value=0.012 Score=48.90 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=42.8
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
++.++.+++++.++++.|.+.+...+||+|+ |+++|+|+..|+++..
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~ 49 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRAL 49 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHH
Confidence 5677899999999999999999999999999 9999999999998764
No 373
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=96.56 E-value=0.0043 Score=51.78 Aligned_cols=47 Identities=17% Similarity=0.379 Sum_probs=43.2
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
+++++++++++.++++.|.+.+...+||+|+ |+++|+|+..|+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~ 49 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREIL 49 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHH
Confidence 5678899999999999999999999999998 9999999999998754
No 374
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.54 E-value=0.015 Score=59.90 Aligned_cols=95 Identities=21% Similarity=0.219 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhCCCceEEEc--ccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCc
Q 010640 276 QIEMIKYAKKTYPELDVIGG--NVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVP 353 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~Vi~g--~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ip 353 (505)
..+.++.+++. .+++.++ .....+.++.+.++|+|+|.+.... .....+++.+.... +.+..++.++|
T Consensus 120 ~~~iv~~~~~~--~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt-----~~~~h~~~~~~~~~---i~~~ik~~~ip 189 (368)
T PRK08649 120 ITERIAEIRDA--GVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTV-----VSAEHVSKEGEPLN---LKEFIYELDVP 189 (368)
T ss_pred HHHHHHHHHhC--eEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccc-----hhhhccCCcCCHHH---HHHHHHHCCCC
Confidence 45566666664 4555442 2345688899999999999874110 00111111111222 23344456899
Q ss_pred EEecCCCCCHHHHHHHHHhCCCEEEecc
Q 010640 354 VIADGGISNSGHIVKALVLGASTVMMGS 381 (505)
Q Consensus 354 vIa~GGI~~~~di~kal~lGA~~V~~G~ 381 (505)
||+ |+|.+..++.+++.+|||+|++|.
T Consensus 190 VIa-G~V~t~e~A~~l~~aGAD~V~VG~ 216 (368)
T PRK08649 190 VIV-GGCVTYTTALHLMRTGAAGVLVGI 216 (368)
T ss_pred EEE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 999 999999999999999999999984
No 375
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.54 E-value=0.024 Score=56.06 Aligned_cols=90 Identities=14% Similarity=0.152 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEE
Q 010640 276 QIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVI 355 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvI 355 (505)
+.+.++.+|+.++....|.-++.+.++++.+.+.|+|+|-+. .++ ++.+.++.+..+ ..+|+.
T Consensus 174 ~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD-------------~~~---~e~l~~~~~~~~-~~i~i~ 236 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEVETETEEQVREAVAAGADIIMFD-------------NRT---PDEIREFVKLVP-SAIVTE 236 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEEC-------------CCC---HHHHHHHHHhcC-CCceEE
Confidence 567777888887533333338899999999999999999552 122 233444444332 247888
Q ss_pred ecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 356 ADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 356 a~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
+.||| +...+......|+|++.+|.+.
T Consensus 237 AiGGI-t~~ni~~~a~~Gvd~IAvg~l~ 263 (277)
T PRK08072 237 ASGGI-TLENLPAYGGTGVDYISLGFLT 263 (277)
T ss_pred EECCC-CHHHHHHHHHcCCCEEEEChhh
Confidence 99999 9999999999999999999865
No 376
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=96.53 E-value=0.0056 Score=50.69 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=43.4
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
++.++.+++++.++.+.|.+.+.+.+||+|+++++|++|..|+.+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~ 48 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDAL 48 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHHHHH
Confidence 56788999999999999999999999999889999999999999865
No 377
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=96.52 E-value=0.0081 Score=58.46 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 300 MYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
.+.|+.+.+.|++.+.+. .-+ ..+.+ +....+..+. +..++|+.++|||++.+|+.+++.+||+-|.
T Consensus 35 ~~~a~~~~~~g~~~l~ivDLd~--------~~g~~-~n~~~i~~i~---~~~~~pv~vgGGirs~edv~~~l~~Ga~kvv 102 (241)
T PRK14024 35 LDAALAWQRDGAEWIHLVDLDA--------AFGRG-SNRELLAEVV---GKLDVKVELSGGIRDDESLEAALATGCARVN 102 (241)
T ss_pred HHHHHHHHHCCCCEEEEEeccc--------cCCCC-ccHHHHHHHH---HHcCCCEEEcCCCCCHHHHHHHHHCCCCEEE
Confidence 456777888999877653 211 01211 3445554444 4457999999999999999999999999999
Q ss_pred ecccccCCC
Q 010640 379 MGSFLAGST 387 (505)
Q Consensus 379 ~G~~f~~~~ 387 (505)
+|+..+...
T Consensus 103 iGs~~l~~p 111 (241)
T PRK14024 103 IGTAALENP 111 (241)
T ss_pred ECchHhCCH
Confidence 999877543
No 378
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=96.50 E-value=0.073 Score=50.29 Aligned_cols=126 Identities=17% Similarity=0.210 Sum_probs=78.5
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEE-ccCCcceee
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRV-GMGSGSICT 325 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v-~~g~g~~~~ 325 (505)
.....++...++|++.|.+|.. ........++.+|+. ++...+ =+-.|+-++..-.-.-+|.|-+ +..+|-...
T Consensus 72 ~p~~~i~~fa~agad~It~H~E--~~~~~~r~i~~Ik~~--G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ 147 (220)
T COG0036 72 NPDRYIEAFAKAGADIITFHAE--ATEHIHRTIQLIKEL--GVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQ 147 (220)
T ss_pred CHHHHHHHHHHhCCCEEEEEec--cCcCHHHHHHHHHHc--CCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCccc
Confidence 3567889999999999999886 233456777888776 444322 1344555554444445888765 433321111
Q ss_pred cccccccCcChHHHHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQS-GVPVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
.+. -.++.-+.++++...+. ++-|-.||||. ..-+..+.++|||.+.+||.+
T Consensus 148 --~Fi---~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~-~~t~~~~~~AGad~~VaGSal 200 (220)
T COG0036 148 --KFI---PEVLEKIRELRAMIDERLDILIEVDGGIN-LETIKQLAAAGADVFVAGSAL 200 (220)
T ss_pred --ccC---HHHHHHHHHHHHHhcccCCeEEEEeCCcC-HHHHHHHHHcCCCEEEEEEEE
Confidence 110 12344455555554422 45688999974 566777888999999999965
No 379
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.50 E-value=0.0071 Score=51.25 Aligned_cols=47 Identities=13% Similarity=0.285 Sum_probs=43.3
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
++.++.+++++.++++.|.+.+...+||+|+|+++|++|..++++..
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~~~~ 48 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADAL 48 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHHHhh
Confidence 67788999999999999999999999999999999999999998764
No 380
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=96.49 E-value=0.025 Score=46.73 Aligned_cols=46 Identities=15% Similarity=0.271 Sum_probs=42.0
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERL 220 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~ 220 (505)
++.++..++++.++++.|.+.+...+||+|+ |+++|+++.++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~ 49 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFE 49 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeec
Confidence 6778899999999999999999999999999 999999999998754
No 381
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=96.48 E-value=0.028 Score=54.06 Aligned_cols=71 Identities=17% Similarity=0.302 Sum_probs=57.3
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCC-CchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEcc
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQG-NSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVGM 318 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g-~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~~ 318 (505)
+..+.++.+.++|++.+++|.-.. .+...++.++.+++.++++|||. |+|.+.+++.+..+.|||++.++.
T Consensus 149 ~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR 221 (231)
T TIGR00736 149 DELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVAR 221 (231)
T ss_pred hHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEcH
Confidence 466888899999999999974322 11135889999999874588877 899999999999999999998863
No 382
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=96.48 E-value=0.011 Score=49.21 Aligned_cols=48 Identities=13% Similarity=0.179 Sum_probs=43.3
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++.+++++.++.++++.|.+.+...+||+|+ |+++|+++..++.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~ 51 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALE 51 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHh
Confidence 6678899999999999999888999999998 99999999999987654
No 383
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.46 E-value=0.0065 Score=50.68 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=43.0
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
++.+++++.++.++++.|.+.+...+||+|+ |+++|+++..|++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~ 49 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLD 49 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHH
Confidence 5678899999999999999999999999998 9999999999998754
No 384
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=96.45 E-value=0.0069 Score=50.32 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=43.3
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
++.++.+++++.++++.|.+.+...+||+|+++++|+++..|+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~ 48 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIRRVP 48 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHHHHH
Confidence 67789999999999999999999999999889999999999998755
No 385
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=96.44 E-value=0.025 Score=46.65 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=41.3
Q ss_pred ceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 176 NVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 176 ~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
-++++++.++.++++.|.+.+...+||+|+++++|+++..|+++..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~ 48 (104)
T cd04594 3 DIKVKDYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKDIENAT 48 (104)
T ss_pred ceEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHhhhc
Confidence 3577899999999999999999999999889999999999998643
No 386
>PRK08005 epimerase; Validated
Probab=96.44 E-value=0.11 Score=49.32 Aligned_cols=125 Identities=13% Similarity=0.079 Sum_probs=78.3
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEE-ccCCcceeecc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRV-GMGSGSICTTQ 327 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v-~~g~g~~~~~~ 327 (505)
....++.+.++|++.+.+|.... ......++.+|+.--..-+....-+..+....++. -+|.|.+ +..+|.....
T Consensus 70 P~~~i~~~~~~gad~It~H~Ea~--~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~-~vD~VlvMsV~PGf~GQ~- 145 (210)
T PRK08005 70 PQRWLPWLAAIRPGWIFIHAESV--QNPSEILADIRAIGAKAGLALNPATPLLPYRYLAL-QLDALMIMTSEPDGRGQQ- 145 (210)
T ss_pred HHHHHHHHHHhCCCEEEEcccCc--cCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHH-hcCEEEEEEecCCCccce-
Confidence 55688899999999999987532 23456777787762122333334455666665554 4787765 4333321111
Q ss_pred cccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+ -...+.-+.++++...+ ..|-+||||. ..-+.++..+|||.+.+|+.+-
T Consensus 146 -f---~~~~~~KI~~l~~~~~~--~~I~VDGGI~-~~~i~~l~~aGad~~V~GsaiF 195 (210)
T PRK08005 146 -F---IAAMCEKVSQSREHFPA--AECWADGGIT-LRAARLLAAAGAQHLVIGRALF 195 (210)
T ss_pred -e---cHHHHHHHHHHHHhccc--CCEEEECCCC-HHHHHHHHHCCCCEEEEChHhh
Confidence 1 01233344444444333 3699999986 7778899999999999998754
No 387
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=96.43 E-value=0.038 Score=57.58 Aligned_cols=120 Identities=15% Similarity=0.156 Sum_probs=72.0
Q ss_pred HHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccc
Q 010640 253 LEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCA 331 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g 331 (505)
.+.+++.|++.+++. ... +. ....|+.. ++..+. -.+-+.+++..+.+.|+|+|.+| .+..|.....
T Consensus 270 ~dlAl~~gAdGVHLG--QeD----L~-~~~aR~ilg~~~iIG-vStHs~eEl~~A~~~gaDYI~lG----PIFpT~TK~~ 337 (437)
T PRK12290 270 WQLAIKHQAYGVHLG--QED----LE-EANLAQLTDAGIRLG-LSTHGYYELLRIVQIQPSYIALG----HIFPTTTKQM 337 (437)
T ss_pred HHHHHHcCCCEEEcC--hHH----cc-hhhhhhhcCCCCEEE-EecCCHHHHHHHhhcCCCEEEEC----CccCCCCCCC
Confidence 444556677766652 111 11 12233433 233333 36678999999999999999775 1222221110
Q ss_pred cCcC-hHHHHHHHHHHHh------hcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 332 VGRG-QATAVYKVSSIAA------QSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 332 ~g~p-~~~~l~~v~~~~~------~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
...| .+..+..+.+.+. ..++|++|-||| +..++..++..||++|.+=+.+..
T Consensus 338 ~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl~aGa~GVAVVSAI~~ 397 (437)
T PRK12290 338 PSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVWQCGVSSLAVVRAITL 397 (437)
T ss_pred CCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHHHcCCCEEEEehHhhc
Confidence 0011 1233444444332 136999999999 999999999999999988888764
No 388
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=96.43 E-value=0.007 Score=51.06 Aligned_cols=47 Identities=15% Similarity=0.284 Sum_probs=43.4
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
++.++.++.++.++++.|.+.+...+||+|+|+++|+++..|+++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~~~~ 48 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLKLAS 48 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecCCeEEEEEeHHHHHHhh
Confidence 56788999999999999999999999999989999999999998865
No 389
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.43 E-value=0.005 Score=53.38 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=43.9
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++.++.+++++.++++.|.+.+...+||+|+ ++++|+++..|+++...
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~ 50 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIY 50 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHh
Confidence 5778999999999999999999999999998 99999999999987653
No 390
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=96.42 E-value=0.035 Score=46.58 Aligned_cols=46 Identities=22% Similarity=0.358 Sum_probs=41.2
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC----CeeeeEEeechhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD----GERLDVVTREDVERL 220 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~----g~l~GiIt~~dil~~ 220 (505)
++.++.+++++.++++.|.+.+...+||+|+ |+++|+++..|++..
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~ 52 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFL 52 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhh
Confidence 5678899999999999999999999999984 799999999998753
No 391
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.41 E-value=0.0058 Score=51.12 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=42.9
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
++.+++++.++.++++.|.+.+...+||+|+ ++++|+|+..|+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~ 49 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQL 49 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHh
Confidence 5678899999999999999999999999998 9999999999998754
No 392
>PRK14057 epimerase; Provisional
Probab=96.41 E-value=0.096 Score=50.96 Aligned_cols=124 Identities=12% Similarity=0.183 Sum_probs=79.8
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCc-----------eEEEcccCCHHHHHHHHHcCCCEEEE-
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPEL-----------DVIGGNVVTMYQAQNLIEAGVDGLRV- 316 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~-----------~Vi~g~V~t~e~a~~l~~aGad~I~v- 316 (505)
....++.+.++|+|.+.+|.... ......++++|+. ++ -+....-+..+....++.. +|.|-+
T Consensus 87 P~~~i~~~~~aGad~It~H~Ea~--~~~~~~l~~Ir~~--G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~-vD~VLvM 161 (254)
T PRK14057 87 QWTAAQACVKAGAHCITLQAEGD--IHLHHTLSWLGQQ--TVPVIGGEMPVIRGISLCPATPLDVIIPILSD-VEVIQLL 161 (254)
T ss_pred HHHHHHHHHHhCCCEEEEeeccc--cCHHHHHHHHHHc--CCCcccccccceeEEEECCCCCHHHHHHHHHh-CCEEEEE
Confidence 55788899999999999988532 1345677777776 43 2333333466666666654 887765
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcC--CcEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSG--VPVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~--ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
+..+|.... .+ -...+.-+.++++..++.+ +.|-+||||.. .-+.++.++|||.+.+|+.+
T Consensus 162 tV~PGfgGQ--~F---i~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~-~ti~~l~~aGad~~V~GSal 224 (254)
T PRK14057 162 AVNPGYGSK--MR---SSDLHERVAQLLCLLGDKREGKIIVIDGSLTQ-DQLPSLIAQGIDRVVSGSAL 224 (254)
T ss_pred EECCCCCch--hc---cHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHCCCCEEEEChHh
Confidence 433332111 11 1123444555555554443 66999999754 57889999999999999875
No 393
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.39 E-value=0.009 Score=49.10 Aligned_cols=46 Identities=20% Similarity=0.402 Sum_probs=42.0
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERL 220 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~ 220 (505)
++.++.+++++.++++.|.+++...+||+|+++++|+++..|+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~~~ 47 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVRRA 47 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhhcc
Confidence 5678899999999999999999999999988999999999999864
No 394
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=96.38 E-value=0.0099 Score=49.58 Aligned_cols=46 Identities=11% Similarity=0.240 Sum_probs=42.2
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERL 220 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~ 220 (505)
++.++.+++++.++++.|.+++.+.+||+|+++++|+||..|++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~ 47 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALR 47 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHH
Confidence 6778899999999999999999999999988999999999999854
No 395
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=96.38 E-value=0.22 Score=46.84 Aligned_cols=130 Identities=22% Similarity=0.260 Sum_probs=81.5
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEc--ccCCHHHHHHHHH-cCCCEEEEccCCc
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG--NVVTMYQAQNLIE-AGVDGLRVGMGSG 321 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g--~V~t~e~a~~l~~-aGad~I~v~~g~g 321 (505)
+.+...-.++.+.++|+|++.+-.... .......++..++. +..+.+- ++.+++...+..+ +|+|.+.+
T Consensus 65 t~D~G~~e~~ma~~aGAd~~tV~g~A~-~~TI~~~i~~A~~~--~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~----- 136 (217)
T COG0269 65 TADAGAIEARMAFEAGADWVTVLGAAD-DATIKKAIKVAKEY--GKEVQIDLIGVWDPEQRAKWLKELGVDQVIL----- 136 (217)
T ss_pred ecchhHHHHHHHHHcCCCEEEEEecCC-HHHHHHHHHHHHHc--CCeEEEEeecCCCHHHHHHHHHHhCCCEEEE-----
Confidence 334455567788999999998854332 22344455555554 5665552 4556776655555 99999865
Q ss_pred ceeecccccccCcCh-HHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 322 SICTTQEVCAVGRGQ-ATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 322 ~~~~~~~~~g~g~p~-~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
+.++...-.|... ..-+..+.+... .++.|-.+||| ++.++-.....|++.|.+|+.+..+
T Consensus 137 --H~g~D~q~~G~~~~~~~l~~ik~~~~-~g~~vAVaGGI-~~~~i~~~~~~~~~ivIvGraIt~a 198 (217)
T COG0269 137 --HRGRDAQAAGKSWGEDDLEKIKKLSD-LGAKVAVAGGI-TPEDIPLFKGIGADIVIVGRAITGA 198 (217)
T ss_pred --EecccHhhcCCCccHHHHHHHHHhhc-cCceEEEecCC-CHHHHHHHhcCCCCEEEECchhcCC
Confidence 1122222122222 334444444432 34778888886 7899999999999999999988643
No 396
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=96.38 E-value=0.0081 Score=49.36 Aligned_cols=48 Identities=17% Similarity=0.253 Sum_probs=43.9
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++.+++.++++.++.+.|.+.+...+||+|+ ++++|++++.|++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~ 50 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALA 50 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHH
Confidence 5678899999999999999999999999999 99999999999988654
No 397
>COG0517 FOG: CBS domain [General function prediction only]
Probab=96.34 E-value=0.011 Score=49.60 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=48.4
Q ss_pred ccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcC
Q 010640 169 YMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGY 223 (505)
Q Consensus 169 im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~ 223 (505)
+|.+ +++++.++.++.++...|.++++..+||+++++++|++|..|++++...
T Consensus 4 ~~~~--~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~~~~~~ 56 (117)
T COG0517 4 IMTK--DVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALAA 56 (117)
T ss_pred cccC--CCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhc
Confidence 3445 8999999999999999999999999999998899999999999998754
No 398
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=96.33 E-value=0.038 Score=45.95 Aligned_cols=47 Identities=19% Similarity=0.321 Sum_probs=42.5
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
++++++.+.++.++++.|.+.+...+||+|+++++|+++..|++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~ 48 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLLDAV 48 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHHHHH
Confidence 56788999999999999999999999999888899999999998764
No 399
>PRK08999 hypothetical protein; Provisional
Probab=96.33 E-value=0.034 Score=56.19 Aligned_cols=81 Identities=19% Similarity=0.084 Sum_probs=55.4
Q ss_pred cccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCC
Q 010640 295 GNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGA 374 (505)
Q Consensus 295 g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA 374 (505)
-++-+.+++..+.+.|+|++.+|- +..|....+...-.+..+..+ ++..++||+|-||| +..++..++.+||
T Consensus 231 ~S~h~~~~~~~a~~~~~dyi~~gp----vf~t~tk~~~~~~g~~~~~~~---~~~~~~Pv~AiGGI-~~~~~~~~~~~g~ 302 (312)
T PRK08999 231 ASCHDAEELARAQRLGVDFAVLSP----VQPTASHPGAAPLGWEGFAAL---IAGVPLPVYALGGL-GPGDLEEAREHGA 302 (312)
T ss_pred EecCCHHHHHHHHhcCCCEEEECC----CcCCCCCCCCCCCCHHHHHHH---HHhCCCCEEEECCC-CHHHHHHHHHhCC
Confidence 366788999999999999997761 111211111100112333333 33457999999999 9999999999999
Q ss_pred CEEEecccc
Q 010640 375 STVMMGSFL 383 (505)
Q Consensus 375 ~~V~~G~~f 383 (505)
++|.+-+.|
T Consensus 303 ~gva~i~~~ 311 (312)
T PRK08999 303 QGIAGIRGL 311 (312)
T ss_pred CEEEEEEEe
Confidence 999776654
No 400
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=96.33 E-value=0.12 Score=49.05 Aligned_cols=125 Identities=21% Similarity=0.206 Sum_probs=89.2
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
.++..+.+..+.+...+++ +-.+.. ..-+..++.+++. ++++-+..+.|.+.|..+.++|+++|. +..
T Consensus 63 ~~~mi~~a~~l~~~~~~i~-iKIP~T--~~Gl~A~~~L~~~--Gi~v~~T~vfs~~Qa~~Aa~aGa~yis-------pyv 130 (213)
T TIGR00875 63 AEGMVEEAKELAKLAPNIV-VKIPMT--SEGLKAVKILKKE--GIKTNVTLVFSAAQALLAAKAGATYVS-------PFV 130 (213)
T ss_pred HHHHHHHHHHHHHhCCCeE-EEeCCC--HHHHHHHHHHHHC--CCceeEEEecCHHHHHHHHHcCCCEEE-------eec
Confidence 3445666677766655533 322211 1225677777766 788888789999999999999999883 233
Q ss_pred cccccccCcChHHHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+| ...+|.+....+.++.+..+.. +..|++ ..+++..++..+..+|||.|-++..++
T Consensus 131 gR-i~d~g~dg~~~v~~~~~~~~~~~~~tkIla-AS~r~~~~v~~~~~~G~d~vTip~~vl 189 (213)
T TIGR00875 131 GR-LDDIGGDGMKLIEEVKTIFENHAPDTEVIA-ASVRHPRHVLEAALIGADIATMPLDVM 189 (213)
T ss_pred ch-HHHcCCCHHHHHHHHHHHHHHcCCCCEEEE-eccCCHHHHHHHHHcCCCEEEcCHHHH
Confidence 33 3456777788888888777654 455555 689999999999999999999987654
No 401
>PRK11573 hypothetical protein; Provisional
Probab=96.29 E-value=0.0066 Score=63.80 Aligned_cols=60 Identities=23% Similarity=0.255 Sum_probs=55.8
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhhhh
Q 010640 162 NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVERLK 221 (505)
Q Consensus 162 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~~~ 221 (505)
.+.+++++|+|+.++++++.+.++.++++.+.+++..++||.++ +.++|+|..+|++...
T Consensus 185 ~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~ 246 (413)
T PRK11573 185 EKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLM 246 (413)
T ss_pred CCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHh
Confidence 46789999999999999999999999999999999999999976 8999999999998753
No 402
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.29 E-value=0.074 Score=50.60 Aligned_cols=119 Identities=15% Similarity=0.080 Sum_probs=71.0
Q ss_pred HHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeeccccccc
Q 010640 253 LEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAV 332 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~ 332 (505)
.+.+.+.+++.+++.. ... . ....++..+.-.++.-++-+.+++..+.+.|+|++.+|- +..|....+.
T Consensus 72 ~~lA~~~~adGVHlg~--~d~----~-~~~~r~~~~~~~~iG~S~H~~~e~~~A~~~gaDYi~lgp----vf~T~tK~~~ 140 (211)
T PRK03512 72 WRLAIKHQAYGVHLGQ--EDL----E-TADLNAIRAAGLRLGVSTHDDMEIDVALAARPSYIALGH----VFPTQTKQMP 140 (211)
T ss_pred HHHHHHcCCCEEEcCh--HhC----C-HHHHHHhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECC----ccCCCCCCCC
Confidence 4455666888786622 111 0 122333332223334467789999999999999998861 1112111111
Q ss_pred CcC-hHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 333 GRG-QATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 333 g~p-~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
..+ .+..+.++.+.. .++||++-|||. ..++.+++..||++|.+-+.|..
T Consensus 141 ~~~~G~~~l~~~~~~~--~~~PV~AiGGI~-~~ni~~l~~~Ga~GiAvisai~~ 191 (211)
T PRK03512 141 SAPQGLAQLARHVERL--ADYPTVAIGGIS-LERAPAVLATGVGSIAVVSAITQ 191 (211)
T ss_pred CCCCCHHHHHHHHHhc--CCCCEEEECCCC-HHHHHHHHHcCCCEEEEhhHhhC
Confidence 111 122333332211 369999999986 89999999999999988888754
No 403
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=96.29 E-value=0.038 Score=59.76 Aligned_cols=82 Identities=24% Similarity=0.242 Sum_probs=57.3
Q ss_pred ccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCC
Q 010640 296 NVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGAS 375 (505)
Q Consensus 296 ~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~ 375 (505)
.+.+.+++..+.+.|+|++.+|- +..+....+.....+..+..+ +...++||++-||| +..++..++.+||+
T Consensus 396 S~h~~~e~~~a~~~gadyi~~gp----if~t~tk~~~~~~g~~~~~~~---~~~~~~Pv~aiGGI-~~~~~~~~~~~G~~ 467 (502)
T PLN02898 396 SCKTPEQAEQAWKDGADYIGCGG----VFPTNTKANNKTIGLDGLREV---CEASKLPVVAIGGI-SASNAASVMESGAP 467 (502)
T ss_pred eCCCHHHHHHHhhcCCCEEEECC----eecCCCCCCCCCCCHHHHHHH---HHcCCCCEEEECCC-CHHHHHHHHHcCCC
Confidence 67899999999999999997751 221211111100123344443 33457999999999 59999999999999
Q ss_pred ---EEEecccccC
Q 010640 376 ---TVMMGSFLAG 385 (505)
Q Consensus 376 ---~V~~G~~f~~ 385 (505)
+|.+++.+..
T Consensus 468 ~~~gvav~~~i~~ 480 (502)
T PLN02898 468 NLKGVAVVSALFD 480 (502)
T ss_pred cCceEEEEeHHhc
Confidence 9999998864
No 404
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=96.25 E-value=0.033 Score=51.02 Aligned_cols=90 Identities=22% Similarity=0.293 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhCCCce-EEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhh--cCC
Q 010640 276 QIEMIKYAKKTYPELD-VIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQ--SGV 352 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~-Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~--~~i 352 (505)
+.+.++.+++..|..+ |.+ ++.+.+++..+.++|+|+|.+.+ + .++.+.++.+.++. .++
T Consensus 66 i~~av~~~~~~~~~~~~I~V-Ev~~~ee~~ea~~~g~d~I~lD~-------------~---~~~~~~~~v~~l~~~~~~v 128 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEV-EVENLEEAEEALEAGADIIMLDN-------------M---SPEDLKEAVEELRELNPRV 128 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEE-EESSHHHHHHHHHTT-SEEEEES-----------------CHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHhCCCCceEEE-EcCCHHHHHHHHHhCCCEEEecC-------------c---CHHHHHHHHHHHhhcCCcE
Confidence 6778888888887664 655 88999999999999999997653 1 22334444443222 248
Q ss_pred cEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 353 PVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 353 pvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
.+.++||| |...+......|+|.+.+|+..
T Consensus 129 ~ie~SGGI-~~~ni~~ya~~gvD~isvg~~~ 158 (169)
T PF01729_consen 129 KIEASGGI-TLENIAEYAKTGVDVISVGSLT 158 (169)
T ss_dssp EEEEESSS-STTTHHHHHHTT-SEEEECHHH
T ss_pred EEEEECCC-CHHHHHHHHhcCCCEEEcChhh
Confidence 89999996 6778888889999999999864
No 405
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=96.24 E-value=0.024 Score=59.99 Aligned_cols=63 Identities=10% Similarity=0.076 Sum_probs=58.4
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhhhhcCC
Q 010640 162 NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVERLKGYP 224 (505)
Q Consensus 162 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~~~~~~ 224 (505)
.+.+++++|+|+.++.+++.+.+.+++.+.+.+++..++||.++ +.++|++..+|++......
T Consensus 204 ~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~ 268 (429)
T COG1253 204 DDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDG 268 (429)
T ss_pred CCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcC
Confidence 46789999999999999999999999999999999999999994 8999999999999987653
No 406
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=96.23 E-value=0.19 Score=48.39 Aligned_cols=126 Identities=13% Similarity=0.213 Sum_probs=78.3
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEE-ccCCcceeecc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRV-GMGSGSICTTQ 327 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v-~~g~g~~~~~~ 327 (505)
....++.+.++|++.+.+|..... ......++.+|+.--..-+....-+..+....++. -+|.|-+ +..+|....
T Consensus 71 P~~~i~~~~~aGad~it~H~Ea~~-~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~-~vD~VLvMsV~PGf~GQ-- 146 (229)
T PRK09722 71 PQDYIDQLADAGADFITLHPETIN-GQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIH-LLDKITVMTVDPGFAGQ-- 146 (229)
T ss_pred HHHHHHHHHHcCCCEEEECccCCc-chHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHH-hcCEEEEEEEcCCCcch--
Confidence 557888999999999999875321 12456677777762122333333355666665555 3787765 433332111
Q ss_pred cccccCcChHHHHHHHHHHHhhcC--CcEEecCCCCCHHHHHHHHHhCCCEEEeccc
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQSG--VPVIADGGISNSGHIVKALVLGASTVMMGSF 382 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~~--ipvIa~GGI~~~~di~kal~lGA~~V~~G~~ 382 (505)
.+ -..++.-+.++++...+.+ +.|-.||||. ..-+.++..+|||.+.+|+.
T Consensus 147 ~f---i~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aGad~~V~Gss 199 (229)
T PRK09722 147 PF---IPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAGADVFIVGTS 199 (229)
T ss_pred hc---cHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEChH
Confidence 11 1123444555555554433 6699999987 66888999999999999953
No 407
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=96.23 E-value=0.016 Score=56.97 Aligned_cols=75 Identities=19% Similarity=0.200 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 300 MYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
.+.|+.+.+.|++.+.+. ..+. ..+. .+.+..+.++.+ ..++||+++|||++..|+.+++.+||+.|.
T Consensus 33 ~~~a~~~~~~g~~~l~i~Dl~~~-------~~~~-~~n~~~i~~i~~---~~~~pv~~gGGi~s~~d~~~l~~~G~~~vv 101 (258)
T PRK01033 33 INAVRIFNEKEVDELIVLDIDAS-------KRGS-EPNYELIENLAS---ECFMPLCYGGGIKTLEQAKKIFSLGVEKVS 101 (258)
T ss_pred HHHHHHHHHcCCCEEEEEECCCC-------cCCC-cccHHHHHHHHH---hCCCCEEECCCCCCHHHHHHHHHCCCCEEE
Confidence 356678888999888653 2110 0111 244555554443 457999999999999999999999999999
Q ss_pred ecccccC
Q 010640 379 MGSFLAG 385 (505)
Q Consensus 379 ~G~~f~~ 385 (505)
+|+..+.
T Consensus 102 igs~~~~ 108 (258)
T PRK01033 102 INTAALE 108 (258)
T ss_pred EChHHhc
Confidence 9987654
No 408
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=96.22 E-value=0.013 Score=48.71 Aligned_cols=47 Identities=15% Similarity=0.311 Sum_probs=42.8
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
++.+++.+.++.++.+.|.+.+...+||+|+++++|+|+..|++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~ 48 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRV 48 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHH
Confidence 67788999999999999999999999999889999999999998643
No 409
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.22 E-value=0.0095 Score=52.64 Aligned_cols=48 Identities=15% Similarity=0.275 Sum_probs=43.9
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~ 222 (505)
+++++++++++.++++.|.+.+...+||+|+++++|++|..|+++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~~~~~ 49 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDILKLLV 49 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeECCeEEEEecHHHHHHHHH
Confidence 677899999999999999999999999998899999999999987653
No 410
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.22 E-value=0.016 Score=56.02 Aligned_cols=75 Identities=9% Similarity=0.095 Sum_probs=52.9
Q ss_pred HHHHHHHHH-cCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEE
Q 010640 300 MYQAQNLIE-AGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTV 377 (505)
Q Consensus 300 ~e~a~~l~~-aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V 377 (505)
.+.|+.+.+ .|+|.+.+. ..+. ..+. ......+.+++ +..++||..+|||++-+|+.+++.+||+-|
T Consensus 34 ~~~a~~~~~~~Ga~~l~ivDLd~a-------~~~~-~~n~~~I~~i~---~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kv 102 (234)
T PRK13587 34 EESIAYYSQFECVNRIHIVDLIGA-------KAQH-AREFDYIKSLR---RLTTKDIEVGGGIRTKSQIMDYFAAGINYC 102 (234)
T ss_pred HHHHHHHHhccCCCEEEEEECccc-------ccCC-cchHHHHHHHH---hhcCCeEEEcCCcCCHHHHHHHHHCCCCEE
Confidence 367777777 699988653 2110 0111 12344444444 456799999999999999999999999999
Q ss_pred EecccccC
Q 010640 378 MMGSFLAG 385 (505)
Q Consensus 378 ~~G~~f~~ 385 (505)
.+||..+.
T Consensus 103 vigt~a~~ 110 (234)
T PRK13587 103 IVGTKGIQ 110 (234)
T ss_pred EECchHhc
Confidence 99998654
No 411
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.21 E-value=0.0099 Score=50.66 Aligned_cols=48 Identities=17% Similarity=0.359 Sum_probs=43.3
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~~~~ 222 (505)
++.++.++.++.+++++|.+.+...+||+|+ |+++|+|+..|+++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~ 51 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLG 51 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhh
Confidence 5678899999999999999999999999987 89999999999987653
No 412
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.20 E-value=0.012 Score=49.22 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=42.7
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
++.++.+++++.++++.|.+.+...+||+|+ |+++|++|.+|+++..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~ 50 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRAL 50 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHH
Confidence 4678899999999999999999999999998 9999999999998754
No 413
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=96.20 E-value=0.054 Score=53.87 Aligned_cols=90 Identities=11% Similarity=0.102 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEE
Q 010640 276 QIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVI 355 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvI 355 (505)
+.+.++.+++..|..+|.+ ++.|.+++..+.++|+|.|.+.+ ..++.+.++.+..+ .++.+.
T Consensus 195 i~~av~~~r~~~~~~kIeV-Ev~sleea~ea~~~gaDiI~LDn----------------~s~e~~~~av~~~~-~~~~ie 256 (296)
T PRK09016 195 IRQAVEKAFWLHPDVPVEV-EVENLDELDQALKAGADIIMLDN----------------FTTEQMREAVKRTN-GRALLE 256 (296)
T ss_pred HHHHHHHHHHhCCCCCEEE-EeCCHHHHHHHHHcCCCEEEeCC----------------CChHHHHHHHHhhc-CCeEEE
Confidence 5677778887777677766 89999999999999999997653 12344445444443 257889
Q ss_pred ecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 356 ADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 356 a~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
++||| |...+.+.-..|+|.+.+|.+..
T Consensus 257 aSGGI-~~~ni~~yA~tGVD~Is~galth 284 (296)
T PRK09016 257 VSGNV-TLETLREFAETGVDFISVGALTK 284 (296)
T ss_pred EECCC-CHHHHHHHHhcCCCEEEeCcccc
Confidence 99986 67889899999999999998653
No 414
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=96.19 E-value=0.0091 Score=50.50 Aligned_cols=47 Identities=13% Similarity=0.314 Sum_probs=43.0
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++..|+.+..
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~ 49 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDAS 49 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHh
Confidence 5678899999999999999999999999999 9999999999998654
No 415
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.16 E-value=0.013 Score=48.80 Aligned_cols=45 Identities=16% Similarity=0.285 Sum_probs=41.7
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
++.++.+++++.++.+.|.+.+.+.+||+|+|+++|+++..|++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~ 46 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVV 46 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHH
Confidence 577899999999999999999999999998899999999999874
No 416
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.16 E-value=0.056 Score=44.51 Aligned_cols=46 Identities=28% Similarity=0.293 Sum_probs=41.9
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERL 220 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~ 220 (505)
++.++..+.++.++++.|.+.+...+||+|+ ++++|+++..+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~ 48 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRN 48 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhc
Confidence 5678889999999999999999999999998 999999999999864
No 417
>PRK01362 putative translaldolase; Provisional
Probab=96.16 E-value=0.16 Score=48.30 Aligned_cols=126 Identities=16% Similarity=0.134 Sum_probs=89.1
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
.+...+.+..+.+....+ .|-.+.- ..-+..++.+++. ++++-+..+.|...+..+.++|+++|.. ..
T Consensus 63 ~~~m~~~a~~l~~~~~~i-~iKIP~T--~~G~~a~~~L~~~--Gi~v~~T~vfs~~Qa~~Aa~aGa~yisp-------yv 130 (214)
T PRK01362 63 AEGMIKEGRELAKIAPNV-VVKIPMT--PEGLKAVKALSKE--GIKTNVTLIFSANQALLAAKAGATYVSP-------FV 130 (214)
T ss_pred HHHHHHHHHHHHHhCCCE-EEEeCCC--HHHHHHHHHHHHC--CCceEEeeecCHHHHHHHHhcCCcEEEe-------ec
Confidence 344556666676665543 3322221 1225667777776 7888887889999999999999998842 33
Q ss_pred cccccccCcChHHHHHHHHHHHhhcC-CcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQSG-VPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~~-ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+| ...+|.+....+.++.+..+..+ -+-|....+++..++..+..+||+.+-++..++
T Consensus 131 gR-i~d~g~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v~~~~~~G~d~iTi~~~vl 189 (214)
T PRK01362 131 GR-LDDIGTDGMELIEDIREIYDNYGFDTEIIAASVRHPMHVLEAALAGADIATIPYKVI 189 (214)
T ss_pred ch-HhhcCCCHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHHHHHHHcCCCEEecCHHHH
Confidence 33 34567777888888888776654 334444799999999999999999999886553
No 418
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=96.14 E-value=0.21 Score=49.46 Aligned_cols=91 Identities=20% Similarity=0.158 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHh--hcCC
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAA--QSGV 352 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~--~~~i 352 (505)
.+.+.++.+|+..|...|.+ ++.+.++++.+.++|+|.|.+.+ . +++.+.++.+..+ ..++
T Consensus 174 ~i~~av~~~r~~~~~~kIeV-Ev~tleea~ea~~~GaDiI~lDn-------------~---~~e~l~~~v~~l~~~~~~~ 236 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITV-EADTIEQALTVLQASPDILQLDK-------------F---TPQQLHHLHERLKFFDHIP 236 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEE-ECCCHHHHHHHHHcCcCEEEECC-------------C---CHHHHHHHHHHHhccCCCE
Confidence 46678888888877667666 88999999999999999997642 1 1233344444442 2357
Q ss_pred cEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 353 PVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 353 pvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
.+.++||| |...+......|+|.+.+|.++
T Consensus 237 ~leasGGI-~~~ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 237 TLAAAGGI-NPENIADYIEAGIDLFITSAPY 266 (277)
T ss_pred EEEEECCC-CHHHHHHHHhcCCCEEEeCcce
Confidence 78888886 7889999999999999999875
No 419
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=96.13 E-value=0.082 Score=51.80 Aligned_cols=109 Identities=21% Similarity=0.206 Sum_probs=75.5
Q ss_pred HHHHHHHHHcCccEE-EEeC-------CCCC-chhHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEEccC
Q 010640 250 KERLEHLVKAGVNVV-VLDS-------SQGN-SSFQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRVGMG 319 (505)
Q Consensus 250 ~e~~~~lieaGad~I-~i~~-------~~g~-~~~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v~~g 319 (505)
.++++.+.++|+-++ .+.. ..|. .....+.|+.+++.. ++|||.. -.....+|+.|.++|+|+|+-+-
T Consensus 20 ~eqa~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~~I~~I~~~V-~iPVig~~kigh~~Ea~~L~~~GvDiIDeTe- 97 (287)
T TIGR00343 20 PEQAKIAEEAGAVAVMALERVPADIRASGGVARMSDPKMIKEIMDAV-SIPVMAKVRIGHFVEAQILEALGVDYIDESE- 97 (287)
T ss_pred HHHHHHHHHcCceEEEeeccCchhhHhcCCeeecCCHHHHHHHHHhC-CCCEEEEeeccHHHHHHHHHHcCCCEEEccC-
Confidence 467777778886555 4321 1222 134567888899987 8999885 45678999999999999996321
Q ss_pred CcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEE
Q 010640 320 SGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTV 377 (505)
Q Consensus 320 ~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V 377 (505)
+ -.|. ..+ ......++++|+++ |++|-.+...+..+||+++
T Consensus 98 -------~-----lrPa-de~--~~~~K~~f~vpfma--d~~~l~EAlrai~~GadmI 138 (287)
T TIGR00343 98 -------V-----LTPA-DWT--FHIDKKKFKVPFVC--GARDLGEALRRINEGAAMI 138 (287)
T ss_pred -------C-----CCcH-HHH--HHHHHHHcCCCEEc--cCCCHHHHHHHHHCCCCEE
Confidence 1 1131 211 12223345899999 9999999999999999865
No 420
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=96.12 E-value=0.034 Score=52.17 Aligned_cols=122 Identities=25% Similarity=0.310 Sum_probs=81.6
Q ss_pred cceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEE
Q 010640 236 KWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 236 ~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~ 315 (505)
+..+|+..-- ..+.++.+.++|+++++ +.+.. .+.++...+. ++|++- ++.|+.++..+.++|++.++
T Consensus 64 ~~lIGAGTVL---~~~q~~~a~~aGa~fiV---sP~~~---~ev~~~a~~~--~ip~~P-G~~TptEi~~Ale~G~~~lK 131 (211)
T COG0800 64 EALIGAGTVL---NPEQARQAIAAGAQFIV---SPGLN---PEVAKAANRY--GIPYIP-GVATPTEIMAALELGASALK 131 (211)
T ss_pred ccEEcccccc---CHHHHHHHHHcCCCEEE---CCCCC---HHHHHHHHhC--CCcccC-CCCCHHHHHHHHHcChhhee
Confidence 4566665322 34778889999999996 33332 2445545454 788776 68999999999999999998
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
.= ....+ +|.+.+.++. ..--++++++.|||... .+...+++|+.+|.+|+-|.
T Consensus 132 ~F-------Pa~~~--Gg~~~~ka~~-----gP~~~v~~~pTGGVs~~-N~~~yla~gv~avG~Gs~l~ 185 (211)
T COG0800 132 FF-------PAEVV--GGPAMLKALA-----GPFPQVRFCPTGGVSLD-NAADYLAAGVVAVGLGSWLV 185 (211)
T ss_pred ec-------Ccccc--CcHHHHHHHc-----CCCCCCeEeecCCCCHH-HHHHHHhCCceEEecCcccc
Confidence 61 00111 0112222110 01124899999998655 99999999999999999774
No 421
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=96.09 E-value=0.084 Score=50.89 Aligned_cols=127 Identities=17% Similarity=0.129 Sum_probs=77.3
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE--cccCCHHHHHHHHHc-CCCEEEE-ccCCcc
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG--GNVVTMYQAQNLIEA-GVDGLRV-GMGSGS 322 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~--g~V~t~e~a~~l~~a-Gad~I~v-~~g~g~ 322 (505)
......++.+.++|+|.+.+|...+.. ...+.++.+++. +..+.+ ..-.+.+....+.+. .+|.|.+ +..+|.
T Consensus 75 ~~p~~~i~~~~~~Gad~itvH~ea~~~-~~~~~l~~ik~~--G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~pG~ 151 (228)
T PTZ00170 75 SNPEKWVDDFAKAGASQFTFHIEATED-DPKAVARKIREA--GMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVEPGF 151 (228)
T ss_pred CCHHHHHHHHHHcCCCEEEEeccCCch-HHHHHHHHHHHC--CCeEEEEECCCCCHHHHHHHHccchhhhHHhhhcccCC
Confidence 346677788999999999998865431 145667777765 444333 233466777666433 3666532 322221
Q ss_pred eeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 323 ICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 323 ~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
-. ..+....+.-+.++++... ...|..+|||.- ..+..+..+|||.+.+|+.+.
T Consensus 152 ~g-----q~~~~~~~~ki~~~~~~~~--~~~I~VdGGI~~-~ti~~~~~aGad~iVvGsaI~ 205 (228)
T PTZ00170 152 GG-----QSFMHDMMPKVRELRKRYP--HLNIQVDGGINL-ETIDIAADAGANVIVAGSSIF 205 (228)
T ss_pred CC-----cEecHHHHHHHHHHHHhcc--cCeEEECCCCCH-HHHHHHHHcCCCEEEEchHHh
Confidence 10 0011112333444433322 377999999865 588899999999999999864
No 422
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.08 E-value=0.017 Score=48.16 Aligned_cols=47 Identities=9% Similarity=0.291 Sum_probs=43.0
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
++.++++++++.++++.|.+.+...+||+|+++++|+++..|+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~ 48 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKV 48 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHH
Confidence 56788999999999999999999999999989999999999998754
No 423
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.07 E-value=0.016 Score=48.57 Aligned_cols=47 Identities=17% Similarity=0.280 Sum_probs=42.6
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~~~ 221 (505)
++.++.+++++.++++.|.+++...+||+|+ ++++|++|.+|+++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~ 50 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKV 50 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHH
Confidence 5788999999999999999999999999985 6999999999998753
No 424
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=96.06 E-value=0.019 Score=55.49 Aligned_cols=76 Identities=21% Similarity=0.212 Sum_probs=52.1
Q ss_pred HHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 300 MYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
.+.++.+.+.|++.+.+- ..+ ...+. .+....+..+ ++..++|++++|||++..|+.+++.+||+.|.
T Consensus 33 ~~~a~~~~~~g~~~i~i~dl~~-------~~~~~-~~n~~~~~~i---~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vi 101 (232)
T TIGR03572 33 VNAARIYNAKGADELIVLDIDA-------SKRGR-EPLFELISNL---AEECFMPLTVGGGIRSLEDAKKLLSLGADKVS 101 (232)
T ss_pred HHHHHHHHHcCCCEEEEEeCCC-------cccCC-CCCHHHHHHH---HHhCCCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 345667778899866552 111 00011 1334444444 34467999999999999999999999999999
Q ss_pred ecccccCC
Q 010640 379 MGSFLAGS 386 (505)
Q Consensus 379 ~G~~f~~~ 386 (505)
+|+.++..
T Consensus 102 lg~~~l~~ 109 (232)
T TIGR03572 102 INTAALEN 109 (232)
T ss_pred EChhHhcC
Confidence 99987644
No 425
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.06 E-value=0.049 Score=45.25 Aligned_cols=47 Identities=9% Similarity=0.109 Sum_probs=42.3
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC----CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD----GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~----g~l~GiIt~~dil~~~ 221 (505)
....+.+++++.++.+.|.+.+...+||+|+ |+++|+|+.+|+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~ 53 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVAL 53 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHH
Confidence 5677899999999999999999999999987 7899999999998765
No 426
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.04 E-value=0.046 Score=45.75 Aligned_cols=47 Identities=17% Similarity=0.334 Sum_probs=40.1
Q ss_pred CceEecCCCCHHHHHHHHHHCC-CCeeEEeeCCeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKND-VDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~-i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
++.++..+.++.++++.|.+.+ ...+||+|+|+++|+++..|+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~ 49 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIVRLT 49 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHHHHH
Confidence 5678899999999999998888 5667777669999999999998754
No 427
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=96.04 E-value=0.11 Score=51.61 Aligned_cols=128 Identities=19% Similarity=0.262 Sum_probs=84.3
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCC--CceEEE----------------cccCCHHHHHHHHH-c
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYP--ELDVIG----------------GNVVTMYQAQNLIE-A 309 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~--~~~Vi~----------------g~V~t~e~a~~l~~-a 309 (505)
..+.++.+++.|.+.+.++.++-.....++..+++.+... ++.|-. ....+++++..+.+ .
T Consensus 86 ~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~t 165 (282)
T TIGR01859 86 SYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKET 165 (282)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHH
Confidence 4577888889999999998776544444555555544321 343321 12448999999997 9
Q ss_pred CCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecC--CCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 310 GVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADG--GISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 310 Gad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~G--GI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
|+|++-++.|.-...+.. .... .+..|.++++ ..++|+++=| ||. ..++.+++.+|++.|-++|-+.
T Consensus 166 gvD~Lavs~Gt~hg~~~~-~~~l---~~e~L~~i~~---~~~iPlv~hGgSGi~-~e~i~~~i~~Gi~kiNv~T~l~ 234 (282)
T TIGR01859 166 GVDYLAAAIGTSHGKYKG-EPGL---DFERLKEIKE---LTNIPLVLHGASGIP-EEQIKKAIKLGIAKINIDTDCR 234 (282)
T ss_pred CcCEEeeccCccccccCC-CCcc---CHHHHHHHHH---HhCCCEEEECCCCCC-HHHHHHHHHcCCCEEEECcHHH
Confidence 999998775432211111 1112 2444544443 4579999999 764 5779999999999999999874
No 428
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=96.04 E-value=0.083 Score=53.88 Aligned_cols=125 Identities=26% Similarity=0.336 Sum_probs=73.0
Q ss_pred EEEeecCCccHHHHHHHHHHcC-ccEEEEeCCCCCchhHHHHHHHHHHhCC--------CceEEE--ccc-CCHHHHHHH
Q 010640 239 VGAAIGTRESDKERLEHLVKAG-VNVVVLDSSQGNSSFQIEMIKYAKKTYP--------ELDVIG--GNV-VTMYQAQNL 306 (505)
Q Consensus 239 v~a~i~~~~~~~e~~~~lieaG-ad~I~i~~~~g~~~~~~~~i~~l~~~~~--------~~~Vi~--g~V-~t~e~a~~l 306 (505)
+++++.+. ...+.+..+.+.| .-++. .. ...+...+.++++++.+| ...|.+ |.- .+.+.+..|
T Consensus 41 vsa~MDtV-te~~mAiama~~Gglgvih--~~-~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~~L 116 (352)
T PF00478_consen 41 VSAPMDTV-TESEMAIAMARLGGLGVIH--RN-MSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAEAL 116 (352)
T ss_dssp EE-SSTTT-SSHHHHHHHHHTTSEEEEE--SS-SCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHHHH
T ss_pred EecCcccc-chHHHHHHHHHhcCCceec--CC-CCHHHHHHHHhhhccccccccccccccceEEEEecCCHHHHHHHHHH
Confidence 34444332 2446676777764 44443 22 223456677777766431 223322 221 247888999
Q ss_pred HHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 307 IEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 307 ~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
.++|+|+|++... .|+..-.+..+..+++... ++|||+ |.|.|++.....+.+|||+|-+|
T Consensus 117 ~~agvD~ivID~a----------~g~s~~~~~~ik~ik~~~~--~~~via-GNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 117 VEAGVDVIVIDSA----------HGHSEHVIDMIKKIKKKFP--DVPVIA-GNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHTT-SEEEEE-S----------STTSHHHHHHHHHHHHHST--TSEEEE-EEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHcCCCEEEcccc----------CccHHHHHHHHHHHHHhCC--CceEEe-cccCCHHHHHHHHHcCCCEEEEe
Confidence 9999999988521 1222223444544444332 488997 99999999999999999999887
No 429
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.03 E-value=0.074 Score=52.85 Aligned_cols=92 Identities=11% Similarity=0.146 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHh--hcCC
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAA--QSGV 352 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~--~~~i 352 (505)
.+.+.++..++..|..++.+ +|.|.+++..+.++|+|.|.+.+ + +++.+.++....+ .-++
T Consensus 185 ~i~~ai~~~r~~~~~~kIeV-Ev~tl~ea~eal~~gaDiI~LDn-------------m---~~e~vk~av~~~~~~~~~v 247 (289)
T PRK07896 185 SVVAALRAVRAAAPDLPCEV-EVDSLEQLDEVLAEGAELVLLDN-------------F---PVWQTQEAVQRRDARAPTV 247 (289)
T ss_pred cHHHHHHHHHHhCCCCCEEE-EcCCHHHHHHHHHcCCCEEEeCC-------------C---CHHHHHHHHHHHhccCCCE
Confidence 45677888888777677766 89999999999999999997652 1 1333444433321 2247
Q ss_pred cEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 353 PVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 353 pvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
.+.++||| |...+.+.-..|+|.+.+|....
T Consensus 248 ~ieaSGGI-~~~ni~~yA~tGvD~Is~galt~ 278 (289)
T PRK07896 248 LLESSGGL-TLDTAAAYAETGVDYLAVGALTH 278 (289)
T ss_pred EEEEECCC-CHHHHHHHHhcCCCEEEeChhhc
Confidence 79999996 78889899999999999998753
No 430
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=96.02 E-value=0.074 Score=53.56 Aligned_cols=101 Identities=22% Similarity=0.364 Sum_probs=72.1
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCC----C--CchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHH-cCCCEEEEcc
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQ----G--NSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIE-AGVDGLRVGM 318 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~----g--~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~-aGad~I~v~~ 318 (505)
++..+.++.+.++|++.+.||+-. | ...-.++.++.+++.+|++|+++ |++.+.+++....+ .|+|+|.++-
T Consensus 155 ~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~ar 234 (358)
T KOG2335|consen 155 EKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSAR 234 (358)
T ss_pred HHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecc
Confidence 457788889999999999998732 2 22345889999999998899999 89999999998887 9999998863
Q ss_pred CCcceeecccc--cccCcChHHHHHHHHHHHhh
Q 010640 319 GSGSICTTQEV--CAVGRGQATAVYKVSSIAAQ 349 (505)
Q Consensus 319 g~g~~~~~~~~--~g~g~p~~~~l~~v~~~~~~ 349 (505)
| .......+ .+.+.+....+.+-...+.+
T Consensus 235 g--lL~NPa~F~~~~~~~~~~~~~~~~l~~~~e 265 (358)
T KOG2335|consen 235 G--LLYNPALFLTAGYGPTPWGCVEEYLDIARE 265 (358)
T ss_pred h--hhcCchhhccCCCCCCHHHHHHHHHHHHHH
Confidence 2 22222334 44444555555444444443
No 431
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.99 E-value=0.091 Score=52.13 Aligned_cols=91 Identities=19% Similarity=0.134 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHhCC-CceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCc
Q 010640 275 FQIEMIKYAKKTYP-ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVP 353 (505)
Q Consensus 275 ~~~~~i~~l~~~~~-~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ip 353 (505)
.+.+.++..|+..| ..+|.+ +|.|.+++..+.++|+|.|.+.+ + +++.+.++.+..+. ++.
T Consensus 182 ~i~~av~~~r~~~~~~~kIeV-Ev~tleea~~a~~agaDiImLDn-------------m---spe~l~~av~~~~~-~~~ 243 (290)
T PRK06559 182 SVQKAIAQARAYAPFVKMVEV-EVESLAAAEEAAAAGADIIMLDN-------------M---SLEQIEQAITLIAG-RSR 243 (290)
T ss_pred cHHHHHHHHHHhCCCCCeEEE-ECCCHHHHHHHHHcCCCEEEECC-------------C---CHHHHHHHHHHhcC-ceE
Confidence 46678888888875 456666 89999999999999999997653 1 23444455444443 578
Q ss_pred EEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 354 VIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 354 vIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+.++||| |...+...-..|+|.+.+|.+..
T Consensus 244 leaSGGI-~~~ni~~yA~tGVD~Is~galth 273 (290)
T PRK06559 244 IECSGNI-DMTTISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred EEEECCC-CHHHHHHHHhcCCCEEEeCcccc
Confidence 8888886 78888888899999999998653
No 432
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=95.98 E-value=0.021 Score=55.08 Aligned_cols=75 Identities=24% Similarity=0.347 Sum_probs=53.3
Q ss_pred HHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 300 MYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
.+.|+.+.+.|++.+.+- ..+ ...+.+ ..+..+.++++ ..++|+..+|||++..|+.+++.+||+.|.
T Consensus 31 ~~~a~~~~~~g~~~l~v~dl~~-------~~~g~~-~~~~~i~~i~~---~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vv 99 (230)
T TIGR00007 31 VEAAKKWEEEGAERIHVVDLDG-------AKEGGP-VNLPVIKKIVR---ETGVPVQVGGGIRSLEDVEKLLDLGVDRVI 99 (230)
T ss_pred HHHHHHHHHcCCCEEEEEeCCc-------cccCCC-CcHHHHHHHHH---hcCCCEEEeCCcCCHHHHHHHHHcCCCEEE
Confidence 456777888999988763 110 111211 23444444443 456899999999999999999999999999
Q ss_pred ecccccC
Q 010640 379 MGSFLAG 385 (505)
Q Consensus 379 ~G~~f~~ 385 (505)
+|+..+.
T Consensus 100 lgs~~l~ 106 (230)
T TIGR00007 100 IGTAAVE 106 (230)
T ss_pred EChHHhh
Confidence 9987764
No 433
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=95.93 E-value=0.022 Score=55.02 Aligned_cols=76 Identities=26% Similarity=0.431 Sum_probs=50.3
Q ss_pred HHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 300 MYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
.+.|+.+.+.|++.+.+. ..+ ... |.+ ..+..+.+.++...+|+..+|||++..|+.+++.+||+-|.
T Consensus 32 ~~~a~~~~~~g~~~l~ivDLda-------a~~--g~~--~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vv 100 (229)
T PF00977_consen 32 VEVAKAFNEQGADELHIVDLDA-------AKE--GRG--SNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVV 100 (229)
T ss_dssp HHHHHHHHHTT-SEEEEEEHHH-------HCC--THH--HHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEE
T ss_pred HHHHHHHHHcCCCEEEEEEccC-------ccc--Cch--hHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEE
Confidence 356677778899988653 110 001 111 22223344555667999999999999999999999999999
Q ss_pred ecccccCC
Q 010640 379 MGSFLAGS 386 (505)
Q Consensus 379 ~G~~f~~~ 386 (505)
+||..+..
T Consensus 101 igt~~~~~ 108 (229)
T PF00977_consen 101 IGTEALED 108 (229)
T ss_dssp ESHHHHHC
T ss_pred eChHHhhc
Confidence 99986644
No 434
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=95.91 E-value=0.16 Score=49.52 Aligned_cols=124 Identities=19% Similarity=0.217 Sum_probs=78.7
Q ss_pred HHHHHHHHHHcCccEEEEeCC-----CCCchhHHHHHHHHHHhCC-C--ceEEE-cccCCHH-----HHHHHHHcCCCEE
Q 010640 249 DKERLEHLVKAGVNVVVLDSS-----QGNSSFQIEMIKYAKKTYP-E--LDVIG-GNVVTMY-----QAQNLIEAGVDGL 314 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~-----~g~~~~~~~~i~~l~~~~~-~--~~Vi~-g~V~t~e-----~a~~l~~aGad~I 314 (505)
-...++.+++.|++-+-+... .|....+.+.++.+++... + +.||. -...+.+ ..+.+.++|+|+|
T Consensus 85 K~~Ea~~Ai~~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFV 164 (257)
T PRK05283 85 ALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFI 164 (257)
T ss_pred HHHHHHHHHHcCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEE
Confidence 455667788889988855432 2445566777777777653 2 34444 1222323 3356778999999
Q ss_pred EEccCCcceeecccccccCcChHHHHHHHHHHHhh----cCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 315 RVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQ----SGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 315 ~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~----~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+-+.|-+. +..++..+...++..++ .++.|=++|||++..+..+.+.+|.+ .+|.-|+
T Consensus 165 KTSTGf~~----------~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~~--~lg~~~~ 226 (257)
T PRK05283 165 KTSTGKVP----------VNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALADE--ILGADWA 226 (257)
T ss_pred EcCCCCCC----------CCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHHHH--HhChhhc
Confidence 87643210 11345555555555432 34789999999999999999999875 3454443
No 435
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=95.87 E-value=0.019 Score=47.65 Aligned_cols=48 Identities=19% Similarity=0.186 Sum_probs=43.4
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~~~~ 222 (505)
++++++++.++.++.+.|.+.+...+||+|+ |+++|++|..|+++...
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~ 51 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALA 51 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHH
Confidence 5678999999999999999999999999976 79999999999998753
No 436
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.87 E-value=0.024 Score=47.15 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=40.6
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
.+.++.++.++.++++.|.+++...++|.++|+++|++|.+|+++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~ 48 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAM 48 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHHHHH
Confidence 56788999999999999988887777766669999999999998764
No 437
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=95.87 E-value=0.029 Score=54.07 Aligned_cols=47 Identities=21% Similarity=0.363 Sum_probs=38.8
Q ss_pred ChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 335 GQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 335 p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+.+..+.++.+ ..++||+++|||++.+|+.+++.+||+.|.+|+...
T Consensus 60 ~n~~~i~~i~~---~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 60 KNLDVVKNIIR---ETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred chHHHHHHHHh---hCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 34555555443 457999999999999999999999999999998865
No 438
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=95.86 E-value=0.018 Score=59.79 Aligned_cols=108 Identities=15% Similarity=0.098 Sum_probs=82.6
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc-----------ccccccccccc-cCCCceEe
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS-----------DNKVKIFDYMR-DCSSNVSV 179 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~-----------~~~~~v~~im~-~~~~~~~v 179 (505)
+.+.|..++-++...+.+ ++ +||.|.+ .+.+..++|.+-+.... -...++.+.-. ...++..+
T Consensus 165 ~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~--~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i 242 (381)
T KOG1764|consen 165 VSISPESSLLDAVLLLIKSRIHRVPVIDPE--TGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIASI 242 (381)
T ss_pred eeecCcHHHHHHHHHHHhCCccceeeeccc--ccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhhheee
Confidence 778899898888888877 66 9999842 77999999998875110 01112222110 11258889
Q ss_pred cCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCC
Q 010640 180 PANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYP 224 (505)
Q Consensus 180 ~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~ 224 (505)
..++++.+|+++|.+.++..+||||. |+.+|.+++.|+.......
T Consensus 243 ~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~ 288 (381)
T KOG1764|consen 243 SEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREG 288 (381)
T ss_pred cCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcC
Confidence 99999999999999999999999999 8889999999998876543
No 439
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=95.79 E-value=0.074 Score=53.80 Aligned_cols=133 Identities=17% Similarity=0.087 Sum_probs=77.2
Q ss_pred HHHHHHHHcCccEEEEeCCCCCc--hhHHHHHHHHHHhC--CCceEEEc------ccCC-----------HHHHHHHHHc
Q 010640 251 ERLEHLVKAGVNVVVLDSSQGNS--SFQIEMIKYAKKTY--PELDVIGG------NVVT-----------MYQAQNLIEA 309 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~~g~~--~~~~~~i~~l~~~~--~~~~Vi~g------~V~t-----------~e~a~~l~~a 309 (505)
..++.+++.|++++.++...|.. ..+++.+..+.+.. -++|+++. .+.+ ...++.+.+.
T Consensus 150 ~sVedAlrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaEL 229 (348)
T PRK09250 150 ASVEDALRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATI 229 (348)
T ss_pred ecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHH
Confidence 34677899999999998776632 23344444433322 17888772 2212 1246888899
Q ss_pred CCCEEEEccCC--cc---eeec----ccccccCc-ChHHHHHHHHHHHhhcCCcEEecCCCCCHH-----HHHHH---HH
Q 010640 310 GVDGLRVGMGS--GS---ICTT----QEVCAVGR-GQATAVYKVSSIAAQSGVPVIADGGISNSG-----HIVKA---LV 371 (505)
Q Consensus 310 Gad~I~v~~g~--g~---~~~~----~~~~g~g~-p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~-----di~ka---l~ 371 (505)
|||+|++---+ .+ +..+ +....... +....+..+.+.|-.-.+||+.+||=.... .+..+ +.
T Consensus 230 GADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~ 309 (348)
T PRK09250 230 GADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKR 309 (348)
T ss_pred cCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 99999985211 11 0000 01111111 233344444444421258999999988532 35567 88
Q ss_pred hCCCEEEecccc
Q 010640 372 LGASTVMMGSFL 383 (505)
Q Consensus 372 lGA~~V~~G~~f 383 (505)
.||.++.+|+-.
T Consensus 310 aGa~Gv~iGRNI 321 (348)
T PRK09250 310 AGGMGLIIGRKA 321 (348)
T ss_pred cCCcchhhchhh
Confidence 999999999854
No 440
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.76 E-value=0.11 Score=51.53 Aligned_cols=89 Identities=19% Similarity=0.174 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhCC-CceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcE
Q 010640 276 QIEMIKYAKKTYP-ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPV 354 (505)
Q Consensus 276 ~~~~i~~l~~~~~-~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipv 354 (505)
..+.++.+|+..| ..+|.+ +|.|.+++..+.++|+|.|.+.+ ..++.+.++.+..+ ...|+
T Consensus 180 i~~ai~~~r~~~~~~~kIeV-Ev~tleea~ea~~~gaDiI~LDn----------------~s~e~l~~av~~~~-~~~~l 241 (281)
T PRK06106 180 VREAIRRARAGVGHLVKIEV-EVDTLDQLEEALELGVDAVLLDN----------------MTPDTLREAVAIVA-GRAIT 241 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEE-EeCCHHHHHHHHHcCCCEEEeCC----------------CCHHHHHHHHHHhC-CCceE
Confidence 5678888888875 345555 89999999999999999997653 12344555555443 35789
Q ss_pred EecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 355 IADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 355 Ia~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
-++||| |...+.+.-..|+|.+.+|...
T Consensus 242 eaSGGI-~~~ni~~yA~tGVD~Is~Galt 269 (281)
T PRK06106 242 EASGRI-TPETAPAIAASGVDLISVGWLT 269 (281)
T ss_pred EEECCC-CHHHHHHHHhcCCCEEEeChhh
Confidence 999996 6788888889999999999865
No 441
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=95.75 E-value=0.16 Score=56.54 Aligned_cols=124 Identities=12% Similarity=0.150 Sum_probs=95.7
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcc-cCCHHHHHHHHHcCCCEEEEccCCcceeec
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGN-VVTMYQAQNLIEAGVDGLRVGMGSGSICTT 326 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~-V~t~e~a~~l~~aGad~I~v~~g~g~~~~~ 326 (505)
+..+.+....+.|+++|.|-+...+..+..+.++.+++.. ++||+.+. +.+......+..+|+|+|-+-.
T Consensus 71 d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~~v-~~PvLrKDFIid~~QI~ea~~~GADavLLI~-------- 141 (695)
T PRK13802 71 DPAALAREYEQGGASAISVLTEGRRFLGSLDDFDKVRAAV-HIPVLRKDFIVTDYQIWEARAHGADLVLLIV-------- 141 (695)
T ss_pred CHHHHHHHHHHcCCcEEEEecCcCcCCCCHHHHHHHHHhC-CCCEEeccccCCHHHHHHHHHcCCCEeehhH--------
Confidence 5678888888999999988765544555678888888876 89999997 4688899999999999996531
Q ss_pred ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCC
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTE 388 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~E 388 (505)
+.+ + -..+.+..+.+...++.++. =++|..|+-+|+.+||+.+++=.+=+.+-|
T Consensus 142 ~~L-----~-~~~l~~l~~~a~~lGme~Lv--Evh~~~el~~a~~~ga~iiGINnRdL~tf~ 195 (695)
T PRK13802 142 AAL-----D-DAQLKHLLDLAHELGMTVLV--ETHTREEIERAIAAGAKVIGINARNLKDLK 195 (695)
T ss_pred hhc-----C-HHHHHHHHHHHHHcCCeEEE--EeCCHHHHHHHHhCCCCEEEEeCCCCccce
Confidence 111 1 12355566777778888888 899999999999999999988766554443
No 442
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=95.70 E-value=0.04 Score=51.97 Aligned_cols=125 Identities=18% Similarity=0.244 Sum_probs=75.7
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEE--EcccCCHHHHHHHHHcCCCEEEE-ccCCcceee
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVI--GGNVVTMYQAQNLIEAGVDGLRV-GMGSGSICT 325 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi--~g~V~t~e~a~~l~~aGad~I~v-~~g~g~~~~ 325 (505)
....++.+.++|++.+.+|.... ....+.++.+|+. ++... ...-+..+....+.. -+|.|.+ +..+|...
T Consensus 69 P~~~i~~~~~~g~~~i~~H~E~~--~~~~~~i~~ik~~--g~k~GialnP~T~~~~~~~~l~-~vD~VlvMsV~PG~~G- 142 (201)
T PF00834_consen 69 PERYIEEFAEAGADYITFHAEAT--EDPKETIKYIKEA--GIKAGIALNPETPVEELEPYLD-QVDMVLVMSVEPGFGG- 142 (201)
T ss_dssp GGGHHHHHHHHT-SEEEEEGGGT--TTHHHHHHHHHHT--TSEEEEEE-TTS-GGGGTTTGC-CSSEEEEESS-TTTSS-
T ss_pred HHHHHHHHHhcCCCEEEEcccch--hCHHHHHHHHHHh--CCCEEEEEECCCCchHHHHHhh-hcCEEEEEEecCCCCc-
Confidence 44678889999999999988633 2456778888887 55432 222233343444433 5888765 44333111
Q ss_pred cccccccCcChHHHHHHHHHHHhh--cCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQ--SGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~--~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+.+. ..++.-+.++++...+ .++.|..||||... .+.++.++||+.+.+||.+-
T Consensus 143 -q~f~---~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~-~~~~~~~aGad~~V~Gs~iF 198 (201)
T PF00834_consen 143 -QKFI---PEVLEKIRELRKLIPENGLDFEIEVDGGINEE-NIKQLVEAGADIFVAGSAIF 198 (201)
T ss_dssp -B--H---GGHHHHHHHHHHHHHHHTCGSEEEEESSESTT-THHHHHHHT--EEEESHHHH
T ss_pred -cccc---HHHHHHHHHHHHHHHhcCCceEEEEECCCCHH-HHHHHHHcCCCEEEECHHHh
Confidence 1110 1245556666665554 35899999998765 67788899999999998753
No 443
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=95.67 E-value=0.21 Score=50.36 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=69.6
Q ss_pred EEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEccc-CCHHHHHHHHHcC--CCEE
Q 010640 239 VGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGGNV-VTMYQAQNLIEAG--VDGL 314 (505)
Q Consensus 239 v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g~V-~t~e~a~~l~~aG--ad~I 314 (505)
+.+++.+. -..+.+.+|.+.|.-.+ +|-.. ..+.+.++++...... ..+.+-+|.- .+.+.+..|.++| +|+|
T Consensus 49 i~AnMdtv-~~~~mA~~la~~g~~~~-iHk~~-~~e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~d~i 125 (343)
T TIGR01305 49 IAANMDTV-GTFEMAAALSQHSIFTA-IHKHY-SVDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQLKFI 125 (343)
T ss_pred EecCCCcc-cCHHHHHHHHHCCCeEE-EeeCC-CHHHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCCCEE
Confidence 34444332 35577888888764332 12111 1122333333322221 1122222211 2567788888885 9999
Q ss_pred EEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 315 RVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 315 ~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
++.. ..|+..-.+..+..+++... +.+||+ |.|.|++++..++.+|||+|.+|
T Consensus 126 viD~----------AhGhs~~~i~~ik~ir~~~p--~~~via-GNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 126 CLDV----------ANGYSEHFVEFVKLVREAFP--EHTIMA-GNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred EEEC----------CCCcHHHHHHHHHHHHhhCC--CCeEEE-ecccCHHHHHHHHHcCCCEEEEc
Confidence 8852 12233334555555554332 355555 67999999999999999999766
No 444
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=95.67 E-value=0.13 Score=50.97 Aligned_cols=91 Identities=16% Similarity=0.146 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHh--hcCC
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAA--QSGV 352 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~--~~~i 352 (505)
.+.+.++.+|+..|...|.+ ++.+.++++.+.++|+|.|.+.+ + .++.+.++.+..+ ..++
T Consensus 175 ~i~~av~~~r~~~~~~kIeV-Ev~tleqa~ea~~agaDiI~LDn-------------~---~~e~l~~av~~~~~~~~~~ 237 (284)
T PRK06096 175 DWSGAINQLRRHAPEKKIVV-EADTPKEAIAALRAQPDVLQLDK-------------F---SPQQATEIAQIAPSLAPHC 237 (284)
T ss_pred cHHHHHHHHHHhCCCCCEEE-ECCCHHHHHHHHHcCCCEEEECC-------------C---CHHHHHHHHHHhhccCCCe
Confidence 45678888888776666666 88999999999999999997642 2 2334444444443 1357
Q ss_pred cEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 353 PVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 353 pvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
.+-++||| |...+...-..|+|.+.+|.+.
T Consensus 238 ~leaSGGI-~~~ni~~yA~tGvD~Is~gal~ 267 (284)
T PRK06096 238 TLSLAGGI-NLNTLKNYADCGIRLFITSAPY 267 (284)
T ss_pred EEEEECCC-CHHHHHHHHhcCCCEEEECccc
Confidence 78888886 6888999999999999999763
No 445
>PRK06852 aldolase; Validated
Probab=95.66 E-value=0.11 Score=51.84 Aligned_cols=120 Identities=19% Similarity=0.121 Sum_probs=72.9
Q ss_pred HHHHHHHcC------ccEEEEeCCCCCc--hhHHHHHHHHHHhC--CCceEEE-----c-ccC---C----HHHHHHHHH
Q 010640 252 RLEHLVKAG------VNVVVLDSSQGNS--SFQIEMIKYAKKTY--PELDVIG-----G-NVV---T----MYQAQNLIE 308 (505)
Q Consensus 252 ~~~~lieaG------ad~I~i~~~~g~~--~~~~~~i~~l~~~~--~~~~Vi~-----g-~V~---t----~e~a~~l~~ 308 (505)
.++.+++.| +|++.++...|.. ..+++.+.++.+.. -++|+++ | .+. . ...++.+.+
T Consensus 120 sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaE 199 (304)
T PRK06852 120 DVEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAAC 199 (304)
T ss_pred cHHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHH
Confidence 366677877 8899888766632 23444444443322 1788876 2 221 1 224688889
Q ss_pred cCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCH-HH----HHHHHH-hCCCEEEeccc
Q 010640 309 AGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNS-GH----IVKALV-LGASTVMMGSF 382 (505)
Q Consensus 309 aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~-~d----i~kal~-lGA~~V~~G~~ 382 (505)
+|||+|++-- ++. .+-...+.+.++.+.| ..+||+.+||=... .| +..++. .||.+|.+|+-
T Consensus 200 LGADIVKv~y------~~~----~~~g~~e~f~~vv~~~--g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRN 267 (304)
T PRK06852 200 LGADFVKVNY------PKK----EGANPAELFKEAVLAA--GRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRN 267 (304)
T ss_pred HcCCEEEecC------CCc----CCCCCHHHHHHHHHhC--CCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechh
Confidence 9999998852 000 0002235555555543 15899999988853 23 445777 89999999986
Q ss_pred c
Q 010640 383 L 383 (505)
Q Consensus 383 f 383 (505)
.
T Consensus 268 I 268 (304)
T PRK06852 268 I 268 (304)
T ss_pred h
Confidence 4
No 446
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=95.65 E-value=0.023 Score=47.87 Aligned_cols=47 Identities=17% Similarity=0.336 Sum_probs=41.7
Q ss_pred CceEecCCCCHHHHHHHHHHCC-CCeeEEeeCCeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKND-VDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~-i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
++.++++++++.++++.|.+.+ ...+||+|+|+++|+|+..|++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~~~~ 49 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALMELL 49 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHHHHH
Confidence 5667899999999999998877 8899999889999999999998754
No 447
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=95.65 E-value=0.021 Score=54.45 Aligned_cols=67 Identities=24% Similarity=0.322 Sum_probs=48.0
Q ss_pred HHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHHHhCCCEEEecc
Q 010640 303 AQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQS-GVPVIADGGISNSGHIVKALVLGASTVMMGS 381 (505)
Q Consensus 303 a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal~lGA~~V~~G~ 381 (505)
|..+...|...+.+. +.|.. .....+..+++ .. ++|++..|||++++++.+++.+|||.|.+|+
T Consensus 141 A~aae~~g~~ivyLe-~SG~~-----------~~~e~I~~v~~---~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 205 (219)
T cd02812 141 ALAAEYLGMPIVYLE-YSGAY-----------GPPEVVRAVKK---VLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGN 205 (219)
T ss_pred HHHHHHcCCeEEEeC-CCCCc-----------CCHHHHHHHHH---hcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 455556777777665 22221 22333433333 34 6999999999999999999999999999999
Q ss_pred ccc
Q 010640 382 FLA 384 (505)
Q Consensus 382 ~f~ 384 (505)
.+.
T Consensus 206 ai~ 208 (219)
T cd02812 206 IVE 208 (219)
T ss_pred hhh
Confidence 885
No 448
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=95.64 E-value=0.12 Score=52.69 Aligned_cols=98 Identities=16% Similarity=0.281 Sum_probs=68.2
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHH
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLE 254 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~ 254 (505)
++++...+.+..+.++.+++.++..++.| + ..+.+.
T Consensus 115 ~~v~~~~G~p~~~~i~~l~~~gi~v~~~v----------------------------------------~----s~~~A~ 150 (330)
T PF03060_consen 115 DVVSFGFGLPPPEVIERLHAAGIKVIPQV----------------------------------------T----SVREAR 150 (330)
T ss_dssp SEEEEESSSC-HHHHHHHHHTT-EEEEEE----------------------------------------S----SHHHHH
T ss_pred EEEEeecccchHHHHHHHHHcCCcccccc----------------------------------------C----CHHHHH
Confidence 67778888888888899998887554443 1 235677
Q ss_pred HHHHcCccEEEEeCCC--CCch----hHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 255 HLVKAGVNVVVLDSSQ--GNSS----FQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 255 ~lieaGad~I~i~~~~--g~~~----~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
.+.+.|+|++++.... ||.. ....++..+++.+ ++||++ |++.+...+..+...|||++.++
T Consensus 151 ~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~-~iPViaAGGI~dg~~iaaal~lGA~gV~~G 219 (330)
T PF03060_consen 151 KAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAV-DIPVIAAGGIADGRGIAAALALGADGVQMG 219 (330)
T ss_dssp HHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH--SS-EEEESS--SHHHHHHHHHCT-SEEEES
T ss_pred HhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhc-CCcEEEecCcCCHHHHHHHHHcCCCEeecC
Confidence 7889999999998632 3332 3788888888887 688876 89999999999999999999886
No 449
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=95.61 E-value=0.22 Score=46.31 Aligned_cols=109 Identities=23% Similarity=0.234 Sum_probs=78.3
Q ss_pred HHHHHHCCCCeeEEeeC---CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCccEEE
Q 010640 189 DEVLEKNDVDFVVLEKD---GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVNVVV 265 (505)
Q Consensus 189 ~~~l~~~~i~~lpVvd~---g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad~I~ 265 (505)
.+-|.+.+...+. +|. .|..| +..+++....++. ....++.++ .+....+.+.|+|++-
T Consensus 91 Vd~L~~~Ga~IIA-~DaT~R~RP~~--~~~~~i~~~k~~~-----------~l~MAD~St----~ee~l~a~~~G~D~IG 152 (229)
T COG3010 91 VDALAEAGADIIA-FDATDRPRPDG--DLEELIARIKYPG-----------QLAMADCST----FEEGLNAHKLGFDIIG 152 (229)
T ss_pred HHHHHHCCCcEEE-eecccCCCCcc--hHHHHHHHhhcCC-----------cEEEeccCC----HHHHHHHHHcCCcEEe
Confidence 3455666776443 453 67888 8999988865543 345566653 3555667789999996
Q ss_pred EeCCC--CC----chhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 266 LDSSQ--GN----SSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 266 i~~~~--g~----~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
-+.+. ++ .......++.+.+. +++||+ |.+.|++.|+++++.|++++.||
T Consensus 153 TTLsGYT~~~~~~~~pDf~lvk~l~~~--~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVG 209 (229)
T COG3010 153 TTLSGYTGYTEKPTEPDFQLVKQLSDA--GCRVIAEGRYNTPEQAKKAIEIGADAVVVG 209 (229)
T ss_pred cccccccCCCCCCCCCcHHHHHHHHhC--CCeEEeeCCCCCHHHHHHHHHhCCeEEEEC
Confidence 54421 21 14567788888775 899998 88999999999999999999997
No 450
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.60 E-value=0.22 Score=50.14 Aligned_cols=126 Identities=11% Similarity=0.138 Sum_probs=72.3
Q ss_pred EEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEccc-CCHHHHHHHHH--cCCCEE
Q 010640 239 VGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGGNV-VTMYQAQNLIE--AGVDGL 314 (505)
Q Consensus 239 v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g~V-~t~e~a~~l~~--aGad~I 314 (505)
+.+++.+. -..+.+..|.+.|.-.+ +|-.. ..+.+.++++..+... ..+.|-+|.- .+.+.+..|.+ +|+|+|
T Consensus 50 i~AnMdTV-~~~~mA~~la~~g~~~~-iHk~~-~~e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~~g~D~i 126 (346)
T PRK05096 50 IAANMDTV-GTFEMAKALASFDILTA-VHKHY-SVEEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSPALNFI 126 (346)
T ss_pred EecCCCcc-ccHHHHHHHHHCCCeEE-EecCC-CHHHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhcCCCCCEE
Confidence 34444332 35577888888764333 22211 1133344444433221 1222322211 24566778888 599999
Q ss_pred EEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 315 RVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 315 ~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
++.. ..|+..-.+..+..+++... +++||+ |.|.|++.+...+.+|||+|-+|
T Consensus 127 viD~----------AhGhs~~~i~~ik~ik~~~P--~~~vIa-GNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 127 CIDV----------ANGYSEHFVQFVAKAREAWP--DKTICA-GNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred EEEC----------CCCcHHHHHHHHHHHHHhCC--CCcEEE-ecccCHHHHHHHHHcCCCEEEEc
Confidence 8852 12333345556666655432 477777 99999999999999999998655
No 451
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=95.59 E-value=0.039 Score=55.13 Aligned_cols=138 Identities=17% Similarity=0.150 Sum_probs=91.6
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEe
Q 010640 164 VKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAA 242 (505)
Q Consensus 164 ~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~ 242 (505)
..|.++|+|.....++.+++++++-.++..+.+..+.||+|+ .+++|+||.+|+........-.| ......+.++..
T Consensus 188 ~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~~~t~ieK--VMtknp~tv~~~ 265 (432)
T COG4109 188 ITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKPSTTIEK--VMTKNPITVRAK 265 (432)
T ss_pred eeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCCCCccHHH--HhccCCeeeccc
Confidence 468899998889999999999999999999999999999999 99999999999998765432211 011112333333
Q ss_pred ecCCccHHHHHHHHHHcCccEEEEeCCCCC------chhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCC
Q 010640 243 IGTRESDKERLEHLVKAGVNVVVLDSSQGN------SSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVD 312 (505)
Q Consensus 243 i~~~~~~~e~~~~lieaGad~I~i~~~~g~------~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad 312 (505)
. .....+..++-.|.+.+-+..++-. ...++..++.+.++ | -+|.-.+..-+..+.+.+-+
T Consensus 266 t----sVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q~q----p-qvget~~d~I~~~l~e~~~~ 332 (432)
T COG4109 266 T----SVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQRQ----P-QVGETISDQIANNLSEKGDE 332 (432)
T ss_pred c----hHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhccC----C-cccccHHHHHHhhhhhhccc
Confidence 2 2556677778889988866544321 12334444333332 1 12344455556666665544
No 452
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=95.59 E-value=0.015 Score=48.37 Aligned_cols=42 Identities=24% Similarity=0.425 Sum_probs=36.4
Q ss_pred ecCCCCHHHHHHHHHHCC-----CCeeEEeeC-CeeeeEEeechhhhh
Q 010640 179 VPANYDLGQIDEVLEKND-----VDFVVLEKD-GERLDVVTREDVERL 220 (505)
Q Consensus 179 v~~~~~l~~a~~~l~~~~-----i~~lpVvd~-g~l~GiIt~~dil~~ 220 (505)
+.+++++.++++.|.+++ ...+||+|+ ++++|+||.+++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~ 49 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA 49 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC
Confidence 467889999999998877 478999998 999999999998763
No 453
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=95.56 E-value=0.033 Score=45.84 Aligned_cols=46 Identities=11% Similarity=0.234 Sum_probs=41.7
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERL 220 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~ 220 (505)
++++++.+.++.++++.|.+.+...+||+|+++++|+++..|++..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~~~ 48 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLLGK 48 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhcc
Confidence 6788999999999999999888889999988999999999998853
No 454
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=95.53 E-value=0.052 Score=52.78 Aligned_cols=69 Identities=26% Similarity=0.273 Sum_probs=53.4
Q ss_pred HHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 300 MYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
.+.|+...+.|++.+=+- .+ |.+....+.++ ++..++||...|||++ +++.+.+.+||+.|.+
T Consensus 41 ~~~A~~~~~~Ga~~lHvV----------DL---g~~n~~~i~~i---~~~~~~~v~vGGGIr~-e~v~~~l~aGa~rVvI 103 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVI----------ML---GPNNDDAAKEA---LHAYPGGLQVGGGIND-TNAQEWLDEGASHVIV 103 (253)
T ss_pred HHHHHHHHHcCCCEEEEE----------EC---CCCcHHHHHHH---HHhCCCCEEEeCCcCH-HHHHHHHHcCCCEEEE
Confidence 578999999999988331 11 33444555444 4456799999999997 9999999999999999
Q ss_pred cccccC
Q 010640 380 GSFLAG 385 (505)
Q Consensus 380 G~~f~~ 385 (505)
||....
T Consensus 104 GS~av~ 109 (253)
T TIGR02129 104 TSWLFT 109 (253)
T ss_pred CcHHHh
Confidence 997654
No 455
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=95.51 E-value=0.17 Score=48.48 Aligned_cols=111 Identities=17% Similarity=0.151 Sum_probs=74.3
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEE---Ecc-----c---CCHHHHHHHHHcCCCEEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVI---GGN-----V---VTMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi---~g~-----V---~t~e~a~~l~~aGad~I~v 316 (505)
+..+.+..+.++|+..+.+.. .+.++.+++.. ++|++ -+. + .+.+.++.+.++|+|+|.+
T Consensus 24 ~~~~~a~a~~~~G~~~~~~~~--------~~~i~~i~~~~-~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~ 94 (221)
T PRK01130 24 IMAAMALAAVQGGAVGIRANG--------VEDIKAIRAVV-DVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIAL 94 (221)
T ss_pred HHHHHHHHHHHCCCeEEEcCC--------HHHHHHHHHhC-CCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEE
Confidence 456677778888998887621 46777777764 67775 111 2 2467899999999998866
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhh-cCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQ-SGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~-~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
..... . .|....+.++.+.+++ .++|++. ++.+..++.++..+|++.+.++
T Consensus 95 d~~~~---~--------~p~~~~~~~~i~~~~~~~~i~vi~--~v~t~ee~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 95 DATLR---P--------RPDGETLAELVKRIKEYPGQLLMA--DCSTLEEGLAAQKLGFDFIGTT 146 (221)
T ss_pred eCCCC---C--------CCCCCCHHHHHHHHHhCCCCeEEE--eCCCHHHHHHHHHcCCCEEEcC
Confidence 42100 0 0100122344455555 6789998 8889999999999999998765
No 456
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=95.47 E-value=0.018 Score=39.39 Aligned_cols=40 Identities=25% Similarity=0.381 Sum_probs=35.1
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccc
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWE 157 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~ 157 (505)
.++.+++++.++.+.|.+ ++ +||+++ +++++|+++..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~g~i~~~~l~ 45 (49)
T smart00116 3 VTVSPDTTLEEALELLREHGIRRLPVVDE---EGRLVGIVTRRDII 45 (49)
T ss_pred eEecCCCcHHHHHHHHHHhCCCcccEECC---CCeEEEEEEHHHHH
Confidence 678899999999999987 65 899987 78999999998874
No 457
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=95.47 E-value=0.055 Score=61.45 Aligned_cols=167 Identities=17% Similarity=0.120 Sum_probs=98.6
Q ss_pred hHHHHHHHHHHhCCCceEEEccc---CCHHHHHHHHHcCCCEEEEccCCcc---eeecccccccCcChHHHHHHHHHHHh
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNV---VTMYQAQNLIEAGVDGLRVGMGSGS---ICTTQEVCAVGRGQATAVYKVSSIAA 348 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V---~t~e~a~~l~~aGad~I~v~~g~g~---~~~~~~~~g~g~p~~~~l~~v~~~~~ 348 (505)
....+|..++...|...|-++-| +-.-.|.-..++.||.|-|+.|-|+ ..|+.. ...|.|.---+.|..+..-
T Consensus 1084 DLaQLIyDLk~aNP~ArVSVKLVSEaGVGiVASGVaK~~ADhI~vSGhDGGTGAS~wt~I-K~AGlPWELGlAEThQtLv 1162 (2142)
T KOG0399|consen 1084 DLAQLIYDLKCANPRARVSVKLVSEAGVGIVASGVAKGNADHILVSGHDGGTGASRWTGI-KHAGLPWELGLAETHQTLV 1162 (2142)
T ss_pred HHHHHHHHhhccCCCceeEEEEEecccceeeeeccccccCceEEEeccCCCcCccccccc-ccCCCChhhcchhhhhHHh
Confidence 33444444555545544433311 1111222234567888888754333 233322 2234454333344433322
Q ss_pred h----cCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccccc
Q 010640 349 Q----SGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGD 424 (505)
Q Consensus 349 ~----~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~ 424 (505)
. .++-+=.||+++++.||+-|-.+||+--.++|.=+- .+|-. |. -.
T Consensus 1163 ~NdLR~rvVlqtDGqlrtG~DV~iAallGAeefgf~T~plI--------------------alGCi--Mm--------Rk 1212 (2142)
T KOG0399|consen 1163 LNDLRGRVVLQTDGQLRTGRDVAIAALLGAEEFGFSTAPLI--------------------ALGCI--MM--------RK 1212 (2142)
T ss_pred hccccccEEEEecCccccchHHHHHHHhCchhhcccccHHH--------------------HHhhH--HH--------HH
Confidence 1 136677899999999999999999998888875221 01100 10 12
Q ss_pred ccccccccceeeeec-----cCC---chhhHHHHHHHHHHHHhhccCCCCHHHHHH
Q 010640 425 KAKLKIAQGVVGAVA-----DKG---SVLKFIPYTMQAVKQGFQDLGASSLQSAHD 472 (505)
Q Consensus 425 ~~~~~~~~g~~~~~~-----~~~---~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~ 472 (505)
|+.+.+|.|+..+.| +.| .|.++.-.+.+++|-.|..+|.+++.|+-.
T Consensus 1213 CH~NtCpVGiAtQdp~LRakF~G~PehvVNff~yvaEEvR~imakLGfrtldemvG 1268 (2142)
T KOG0399|consen 1213 CHLNTCPVGIATQDPELRAKFPGQPEHVVNFFFYVAEEVRGIMAKLGFRTLDEMVG 1268 (2142)
T ss_pred hccCCCCcccccCCHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHhCcchHHHHhc
Confidence 456677888777664 334 455666788999999999999999999853
No 458
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=95.44 E-value=0.11 Score=49.93 Aligned_cols=68 Identities=19% Similarity=0.204 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCccEEEEeC---CCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 249 DKERLEHLVKAGVNVVVLDS---SQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~---~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
....++.+.+.|++++-... ..|......+.++.+++.. ++||++ |++.+++++..+.+.|+|++.++
T Consensus 133 d~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~-~vpVI~egGI~tpeda~~AmelGAdgVlV~ 204 (248)
T cd04728 133 DPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERA-DVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (248)
T ss_pred CHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhC-CCcEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 34667788888999984411 1122222367788888874 789888 68999999999999999999875
No 459
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=95.44 E-value=0.36 Score=45.80 Aligned_cols=119 Identities=20% Similarity=0.226 Sum_probs=75.7
Q ss_pred HHHHHHHHHcCccEEEEeCC-----CCCchhHHHHHHHHHHhCCC---ceEEEc-ccCCHH----HHHHHHHcCCCEEEE
Q 010640 250 KERLEHLVKAGVNVVVLDSS-----QGNSSFQIEMIKYAKKTYPE---LDVIGG-NVVTMY----QAQNLIEAGVDGLRV 316 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~-----~g~~~~~~~~i~~l~~~~~~---~~Vi~g-~V~t~e----~a~~l~~aGad~I~v 316 (505)
...++.+++.|+|-+-+... .|+...+.+.++.+++..++ +.||+- ...+.+ ..+.+.++|+|+|+-
T Consensus 80 ~~Ea~~ai~~GAdEiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKT 159 (228)
T COG0274 80 AAEAREAIENGADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAGADFVKT 159 (228)
T ss_pred HHHHHHHHHcCCCeeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEc
Confidence 44566788889888744332 24456677888888887743 234442 223333 335567799999988
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
|.|-. . +.-|+..+....+.. ...+.|=++|||+|..|+.+.+.+||+-++.
T Consensus 160 STGf~-------~---~gAT~edv~lM~~~v-g~~vgvKaSGGIrt~eda~~~i~aga~RiGt 211 (228)
T COG0274 160 STGFS-------A---GGATVEDVKLMKETV-GGRVGVKASGGIRTAEDAKAMIEAGATRIGT 211 (228)
T ss_pred CCCCC-------C---CCCCHHHHHHHHHHh-ccCceeeccCCcCCHHHHHHHHHHhHHHhcc
Confidence 74321 0 113444443334433 2358999999999999999999999654433
No 460
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=95.42 E-value=0.052 Score=52.50 Aligned_cols=74 Identities=23% Similarity=0.297 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 300 MYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
.+.|+.+.+.|+|.+.+. ..+ ..+. .+....+..+. +...+|+..+|||++.+|+.+++.+||+-|.
T Consensus 38 ~~~a~~~~~~g~~~l~i~DLd~--------~~~~-~~n~~~i~~i~---~~~~~~v~vgGGir~~edv~~~l~~Ga~~vi 105 (233)
T cd04723 38 LDVARAYKELGFRGLYIADLDA--------IMGR-GDNDEAIRELA---AAWPLGLWVDGGIRSLENAQEWLKRGASRVI 105 (233)
T ss_pred HHHHHHHHHCCCCEEEEEeCcc--------ccCC-CccHHHHHHHH---HhCCCCEEEecCcCCHHHHHHHHHcCCCeEE
Confidence 467788888999988663 211 0111 13444454443 4457999999999999999999999999999
Q ss_pred ecccccC
Q 010640 379 MGSFLAG 385 (505)
Q Consensus 379 ~G~~f~~ 385 (505)
+||....
T Consensus 106 igt~~~~ 112 (233)
T cd04723 106 VGTETLP 112 (233)
T ss_pred Ecceecc
Confidence 9997543
No 461
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=95.40 E-value=0.81 Score=45.04 Aligned_cols=68 Identities=21% Similarity=0.322 Sum_probs=47.3
Q ss_pred HHHHHHHHHHcCccEEEE---eCCCCC----chhHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEEc
Q 010640 249 DKERLEHLVKAGVNVVVL---DSSQGN----SSFQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i---~~~~g~----~~~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v~ 317 (505)
..++++.+.+..-.++-+ ....|. .....+.++.+|+.. +.|+.+| ++.+.++++.+.++|+|+++||
T Consensus 156 ~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t-~~Pi~vGFGI~~~e~~~~~~~~GADGvVVG 231 (263)
T CHL00200 156 SKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMT-NKPIILGFGISTSEQIKQIKGWNINGIVIG 231 (263)
T ss_pred CHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhc-CCCEEEECCcCCHHHHHHHHhcCCCEEEEC
Confidence 346666666653323322 222232 245677888888865 8898885 7888999999999999999986
No 462
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=95.39 E-value=0.12 Score=50.07 Aligned_cols=69 Identities=25% Similarity=0.369 Sum_probs=52.2
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEcc
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVGM 318 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~~ 318 (505)
.+..+.++.+.++|+|.++++.........++.++.++ .++||+. |++.+.+++.+++..|+|++.++-
T Consensus 152 ~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~---~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR 221 (233)
T cd02911 152 VDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS---TELFIIGNNSVTTIESAKEMFSYGADMVSVAR 221 (233)
T ss_pred cCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc---CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcC
Confidence 45778888899999999877543221122356666665 3788877 899999999999999999998874
No 463
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=95.39 E-value=0.28 Score=48.16 Aligned_cols=110 Identities=21% Similarity=0.219 Sum_probs=74.5
Q ss_pred HHHHHHHHHHcCccEE-EEeC-------CCCC-chhHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEEcc
Q 010640 249 DKERLEHLVKAGVNVV-VLDS-------SQGN-SSFQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRVGM 318 (505)
Q Consensus 249 ~~e~~~~lieaGad~I-~i~~-------~~g~-~~~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v~~ 318 (505)
..++++.+.++|+-.+ +++. ..|. ..+..+.++.+++.. ++|||.. -.....+++.+.++|+|.|+..
T Consensus 17 ~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~V-~iPVIGi~K~~~~~Ea~~L~eaGvDiIDaT- 94 (283)
T cd04727 17 NAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDAV-SIPVMAKVRIGHFVEAQILEALGVDMIDES- 94 (283)
T ss_pred CHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHhC-CCCeEEeeehhHHHHHHHHHHcCCCEEecc-
Confidence 3467777778886554 3322 2221 234578888999987 8999874 3345889999999999999521
Q ss_pred CCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEE
Q 010640 319 GSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTV 377 (505)
Q Consensus 319 g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V 377 (505)
.+ -.|.-+.+. ....++++|+++ ++.|-.+...|..+|||+|
T Consensus 95 -------~r-----~rP~~~~~~---~iK~~~~~l~MA--D~stleEal~a~~~Gad~I 136 (283)
T cd04727 95 -------EV-----LTPADEEHH---IDKHKFKVPFVC--GARNLGEALRRISEGAAMI 136 (283)
T ss_pred -------CC-----CCcHHHHHH---HHHHHcCCcEEc--cCCCHHHHHHHHHCCCCEE
Confidence 11 113111222 222335899999 9999999999999999976
No 464
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=95.39 E-value=0.73 Score=46.10 Aligned_cols=129 Identities=19% Similarity=0.289 Sum_probs=86.2
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCC--CceEEE------c--------cc-CCHHHHHHHHHcCC
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYP--ELDVIG------G--------NV-VTMYQAQNLIEAGV 311 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~--~~~Vi~------g--------~V-~t~e~a~~l~~aGa 311 (505)
..+.++.+++.|.+.+-++.++-.....++..+++++... ++++-+ | +. .++++|..+.+.|+
T Consensus 88 ~~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~~tgv 167 (293)
T PRK07315 88 HYEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMVETGI 167 (293)
T ss_pred CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHHHcCC
Confidence 3567888899999999998877655555666666655321 333211 1 12 68999999999999
Q ss_pred CEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhc-CCcEEecCC--CCCHHHHHHHHHhCCCEEEeccccc
Q 010640 312 DGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQS-GVPVIADGG--ISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 312 d~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~-~ipvIa~GG--I~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
|++-+++|.-...+......++ +..|.++++ .. ++|+++=|| | +..++.+++..|++-|-++|.+.
T Consensus 168 D~LAv~iG~vHG~y~t~~k~l~---~e~L~~i~~---~~~~iPlVlhGGSGi-~~e~~~~~i~~Gi~KiNv~T~i~ 236 (293)
T PRK07315 168 DFLAAGIGNIHGPYPENWEGLD---LDHLEKLTE---AVPGFPIVLHGGSGI-PDDQIQEAIKLGVAKVNVNTECQ 236 (293)
T ss_pred CEEeeccccccccCCCCCCcCC---HHHHHHHHH---hccCCCEEEECCCCC-CHHHHHHHHHcCCCEEEEccHHH
Confidence 9998886543211111111222 334444444 34 499999988 5 45779999999999999999875
No 465
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.33 E-value=0.22 Score=49.34 Aligned_cols=90 Identities=16% Similarity=0.171 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHhCC-CceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCc
Q 010640 275 FQIEMIKYAKKTYP-ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVP 353 (505)
Q Consensus 275 ~~~~~i~~l~~~~~-~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ip 353 (505)
.+.+.++.+|+..| ..+|.+ +|.|.+++..+.++|+|.|.+.+ . .++.+.++....+. ...
T Consensus 178 ~i~~av~~~r~~~~~~~kIeV-Ev~slee~~ea~~~gaDiImLDn-------------~---s~e~l~~av~~~~~-~~~ 239 (281)
T PRK06543 178 DLTEALRHVRAQLGHTTHVEV-EVDRLDQIEPVLAAGVDTIMLDN-------------F---SLDDLREGVELVDG-RAI 239 (281)
T ss_pred HHHHHHHHHHHhCCCCCcEEE-EeCCHHHHHHHHhcCCCEEEECC-------------C---CHHHHHHHHHHhCC-CeE
Confidence 46788888888876 356666 89999999999999999997653 1 23334444444432 467
Q ss_pred EEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 354 VIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 354 vIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
+.++||| |...+.+.-..|+|.+.+|.+.
T Consensus 240 leaSGgI-~~~ni~~yA~tGVD~Is~galt 268 (281)
T PRK06543 240 VEASGNV-NLNTVGAIASTGVDVISVGALT 268 (281)
T ss_pred EEEECCC-CHHHHHHHHhcCCCEEEeCccc
Confidence 8888886 7888888889999999999865
No 466
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.30 E-value=0.21 Score=49.57 Aligned_cols=89 Identities=13% Similarity=0.138 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEE
Q 010640 276 QIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVI 355 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvI 355 (505)
..+.++.+++..+..+|.+ +|.|.+++..+.++|+|.|.+.+ + +++.+.++.+..+. ++.+-
T Consensus 192 i~~av~~~r~~~~~~kIeV-Evetleea~eA~~aGaDiImLDn-------------m---spe~l~~av~~~~~-~~~lE 253 (294)
T PRK06978 192 VGAALDAAFALNAGVPVQI-EVETLAQLETALAHGAQSVLLDN-------------F---TLDMMREAVRVTAG-RAVLE 253 (294)
T ss_pred HHHHHHHHHHhCCCCcEEE-EcCCHHHHHHHHHcCCCEEEECC-------------C---CHHHHHHHHHhhcC-CeEEE
Confidence 4566777776544455555 88999999999999999997653 1 23334444444432 57788
Q ss_pred ecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 356 ADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 356 a~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
++||| |...+.+.-..|.|.+.+|...
T Consensus 254 aSGGI-t~~ni~~yA~tGVD~IS~galt 280 (294)
T PRK06978 254 VSGGV-NFDTVRAFAETGVDRISIGALT 280 (294)
T ss_pred EECCC-CHHHHHHHHhcCCCEEEeCccc
Confidence 88886 6888888889999999999865
No 467
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=95.29 E-value=0.59 Score=46.50 Aligned_cols=129 Identities=17% Similarity=0.213 Sum_probs=85.6
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCC--CceEE-----Ec-----------ccCCHHHHHHHHH-c
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYP--ELDVI-----GG-----------NVVTMYQAQNLIE-A 309 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~--~~~Vi-----~g-----------~V~t~e~a~~l~~-a 309 (505)
..+.++.+++.|++.+-++.++-.....++..+.+++... ++++- +| ...+++++..+.+ .
T Consensus 86 ~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~t 165 (281)
T PRK06806 86 TFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEET 165 (281)
T ss_pred CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhh
Confidence 4578888999999999998876544555555555554331 33331 12 1358899998874 6
Q ss_pred CCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecC--CCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 310 GVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADG--GISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 310 Gad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~G--GI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
|+|++-+++|+-.... . +...=.+..|.++++ ..++|+++=| || +..++.+++..|++.|-+.|.+..
T Consensus 166 g~DyLAvaiG~~hg~~--~--~~~~l~~~~L~~i~~---~~~iPlV~hG~SGI-~~e~~~~~i~~G~~kinv~T~i~~ 235 (281)
T PRK06806 166 DVDALAVAIGNAHGMY--N--GDPNLRFDRLQEIND---VVHIPLVLHGGSGI-SPEDFKKCIQHGIRKINVATATFN 235 (281)
T ss_pred CCCEEEEccCCCCCCC--C--CCCccCHHHHHHHHH---hcCCCEEEECCCCC-CHHHHHHHHHcCCcEEEEhHHHHH
Confidence 9999988654322111 1 110112445555544 4579999999 76 567899999999999999998753
No 468
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=95.28 E-value=0.11 Score=51.13 Aligned_cols=85 Identities=20% Similarity=0.205 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCc
Q 010640 275 FQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVP 353 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ip 353 (505)
...+.++.+++.. ++||+++ .+....+|+.|.++|+|+|+-+- + . .| +..+ .....+++++|
T Consensus 61 ~~p~~I~aIk~~V-~iPVigk~Righ~~Ea~~L~~~GvDiID~Te--------~-l----rp-ad~~--~~~~K~~f~~~ 123 (293)
T PRK04180 61 ADPKMIEEIMDAV-SIPVMAKARIGHFVEAQILEALGVDYIDESE--------V-L----TP-ADEE--YHIDKWDFTVP 123 (293)
T ss_pred CCHHHHHHHHHhC-CCCeEEeehhhHHHHHHHHHHcCCCEEeccC--------C-C----Cc-hHHH--HHHHHHHcCCC
Confidence 3457778888887 8999885 44568999999999999996321 0 1 13 1111 22223345899
Q ss_pred EEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 354 VIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 354 vIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
+++ |++|-.+...+..+|||+|.
T Consensus 124 fma--d~~~l~EAlrai~~GadmI~ 146 (293)
T PRK04180 124 FVC--GARNLGEALRRIAEGAAMIR 146 (293)
T ss_pred EEc--cCCCHHHHHHHHHCCCCeee
Confidence 999 99999999999999998764
No 469
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=95.27 E-value=0.25 Score=49.83 Aligned_cols=67 Identities=15% Similarity=0.287 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCccEEEEeCC--CCCc--hhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 250 KERLEHLVKAGVNVVVLDSS--QGNS--SFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~--~g~~--~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
.+.++.+.++|+|.|+++.. .|+. ...+..++.+++.. ++||++ |++.+.+++..+...|+|++.++
T Consensus 119 ~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~-~iPviaaGGI~~~~~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 119 VALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAV-SIPVIAAGGIADGRGMAAAFALGAEAVQMG 190 (307)
T ss_pred HHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCCEeecc
Confidence 35677788899999999763 2332 23678888888876 688876 89999999999999999999886
No 470
>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]
Probab=95.23 E-value=0.032 Score=55.45 Aligned_cols=166 Identities=12% Similarity=0.110 Sum_probs=102.0
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc--------------hhHHHHHHHHHHhCCCceEEEcccCC----HHHHHHHHHc
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS--------------SFQIEMIKYAKKTYPELDVIGGNVVT----MYQAQNLIEA 309 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~--------------~~~~~~i~~l~~~~~~~~Vi~g~V~t----~e~a~~l~~a 309 (505)
.+.+....-.++|+|.++++.++.|. .-.-+.-.|++... .+|++.+...+ .+-|+.....
T Consensus 219 ~w~el~d~~eqag~d~lE~nlscphgm~ergmgla~gq~p~v~~EvC~Wi~A~~-~Ip~~~kmTPNitd~revar~~~~~ 297 (471)
T KOG1799|consen 219 CWMELNDSGEQAGQDDLETNLSCPHGMCERGMGLALGQCPIVDCEVCGWINAKA-TIPMVSKMTPNITDKREVARSVNPV 297 (471)
T ss_pred hHHHHhhhHHhhcccchhccCCCCCCCccccccceeccChhhhHHHhhhhhhcc-ccccccccCCCcccccccchhcCcc
Confidence 46666777778899999887654221 12233444555543 56766653322 2345555556
Q ss_pred CCCEEEEcc------C--C--c--ceeecc--cccccCc----C-hHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHH
Q 010640 310 GVDGLRVGM------G--S--G--SICTTQ--EVCAVGR----G-QATAVYKVSSIAAQSGVPVIADGGISNSGHIVKAL 370 (505)
Q Consensus 310 Gad~I~v~~------g--~--g--~~~~~~--~~~g~g~----p-~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal 370 (505)
|+.+|-.-+ | . - .+|.+. ...|... | .+..+..+++..+ ..|+.+-|||-++.|.+..+
T Consensus 298 g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S~~AvRPIAl~~V~~IA~~m~--~F~l~~~GGvEt~~~~~~Fi 375 (471)
T KOG1799|consen 298 GCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYSYKAVRPIALAKVMNIAKMMK--EFSLSGIGGVETGYDAAEFI 375 (471)
T ss_pred cccchhhHhHHHHHhcccccccCCCcccccccCCCCccccccchHHHHHHHHHHHHhh--cCccccccCcccccchhhHh
Confidence 666653211 0 0 0 011100 0111111 2 2234444455444 47899999999999999999
Q ss_pred HhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHH
Q 010640 371 VLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPY 450 (505)
Q Consensus 371 ~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 450 (505)
.+|++.||+.+.... .| +..+..
T Consensus 376 l~Gs~~vQVCt~V~~----------------------------------------------~~-----------~~~V~~ 398 (471)
T KOG1799|consen 376 LLGSNTVQVCTGVMM----------------------------------------------HG-----------YGHVKT 398 (471)
T ss_pred hcCCcHhhhhhHHHh----------------------------------------------cC-----------cchHHH
Confidence 999999999986531 01 234568
Q ss_pred HHHHHHHHhhccCCCCHHHHHHh
Q 010640 451 TMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 451 l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
+..+|+..|.+.|..+|++++..
T Consensus 399 ~Ca~LK~~m~~~~~~ti~~~~G~ 421 (471)
T KOG1799|consen 399 LCAELKDFMKQHNFSTIEEFRGH 421 (471)
T ss_pred HHHHHHHHHHHcCchhhhhccCc
Confidence 99999999999999999999854
No 471
>PRK00208 thiG thiazole synthase; Reviewed
Probab=95.22 E-value=0.14 Score=49.26 Aligned_cols=68 Identities=19% Similarity=0.190 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCccEEEEeC---CCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 249 DKERLEHLVKAGVNVVVLDS---SQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~---~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
....++.+.+.|++++-... ..|......+.++.+++.. ++||++ +++.+++++..+.+.|+|++.++
T Consensus 133 d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~-~vpVIveaGI~tpeda~~AmelGAdgVlV~ 204 (250)
T PRK00208 133 DPVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQA-DVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (250)
T ss_pred CHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhc-CCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 34667788888999984311 1122222266788888874 789888 78999999999999999999875
No 472
>PRK06801 hypothetical protein; Provisional
Probab=95.17 E-value=0.7 Score=46.01 Aligned_cols=128 Identities=19% Similarity=0.274 Sum_probs=82.6
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC--CCceE--EEcc-----------------cCCHHHHHHHH
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY--PELDV--IGGN-----------------VVTMYQAQNLI 307 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~--~~~~V--i~g~-----------------V~t~e~a~~l~ 307 (505)
..+.++.+++.|.+.+-++.++-.....++..+++.+.. .+++| -+|. ..++++++.+.
T Consensus 86 ~~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~ 165 (286)
T PRK06801 86 HFEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFV 165 (286)
T ss_pred CHHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHH
Confidence 457788899999999999877643334444444443322 13433 1111 23568888888
Q ss_pred -HcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCC--CCCHHHHHHHHHhCCCEEEeccccc
Q 010640 308 -EAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGG--ISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 308 -~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GG--I~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+.|+|++-+++|....-+.. ...+ .+..+.++++ ..++|+++-|| |. ..++.+++.+|++-|-++|.+.
T Consensus 166 ~~tgvD~LAvaiGt~Hg~y~~-~~~l---~~e~l~~i~~---~~~~PLVlHGGSgi~-~e~~~~~i~~Gi~KINv~T~~~ 237 (286)
T PRK06801 166 DRTGIDALAVAIGNAHGKYKG-EPKL---DFARLAAIHQ---QTGLPLVLHGGSGIS-DADFRRAIELGIHKINFYTGMS 237 (286)
T ss_pred HHHCcCEEEeccCCCCCCCCC-CCCC---CHHHHHHHHH---hcCCCEEEECCCCCC-HHHHHHHHHcCCcEEEehhHHH
Confidence 79999999876543222110 1111 3444544443 35699999998 65 5789999999999999999874
No 473
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=95.12 E-value=0.66 Score=44.35 Aligned_cols=125 Identities=15% Similarity=0.153 Sum_probs=84.4
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
.++..+.+..+.+.+..++ |-.+.- ..-+..++.+++. ++++-+..|.|...|..+..+|+++|.. ..
T Consensus 65 ~e~mi~ea~~l~~~~~ni~-IKIP~T--~~Gl~A~~~L~~~--GI~vn~T~vfs~~Qa~~Aa~aGa~yIsp-------yv 132 (220)
T PRK12653 65 AEGMVNDARKLRSIIADIV-VKVPVT--AEGLAAIKMLKAE--GIPTLGTAVYGAAQGLLSALAGAEYVAP-------YV 132 (220)
T ss_pred HHHHHHHHHHHHHhCCCEE-EEeCCC--HHHHHHHHHHHHc--CCCeeEEEecCHHHHHHHHhcCCcEEEe-------ec
Confidence 3445566666666665543 322211 1226677777776 7888887889999999999999998843 22
Q ss_pred cccccccCcChHHHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+| ...+|...+..+.++.+..+.. +..|++ ..+++..++.+++.+||+.+-+....+
T Consensus 133 gR-~~~~g~dg~~~i~~i~~~~~~~~~~tkILa-AS~r~~~~v~~~~~~G~d~vTip~~vl 191 (220)
T PRK12653 133 NR-IDAQGGSGIQTVTDLQQLLKMHAPQAKVLA-ASFKTPRQALDCLLAGCESITLPLDVA 191 (220)
T ss_pred Ch-HhhcCCChHHHHHHHHHHHHhcCCCcEEEE-EecCCHHHHHHHHHcCCCEEECCHHHH
Confidence 23 2334555566666666666543 233444 689999999999999999999886543
No 474
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.00 E-value=0.071 Score=55.46 Aligned_cols=69 Identities=22% Similarity=0.304 Sum_probs=49.5
Q ss_pred CHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 299 TMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 299 t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
+.+.+..+.++|+|+|.+.... +++......+.++++..+ +++||+ |+|.|..+...++.+|||+|.
T Consensus 154 ~~~~v~~lv~aGvDvI~iD~a~----------g~~~~~~~~v~~ik~~~p--~~~vi~-g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 154 TIERVEELVKAHVDILVIDSAH----------GHSTRIIELVKKIKTKYP--NLDLIA-GNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred HHHHHHHHHhcCCCEEEEECCC----------CCChhHHHHHHHHHhhCC--CCcEEE-EecCCHHHHHHHHHcCCCEEE
Confidence 4478999999999999875211 223333444545544322 466666 899999999999999999998
Q ss_pred ec
Q 010640 379 MG 380 (505)
Q Consensus 379 ~G 380 (505)
+|
T Consensus 221 vG 222 (404)
T PRK06843 221 VG 222 (404)
T ss_pred EC
Confidence 77
No 475
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=95.00 E-value=0.28 Score=46.33 Aligned_cols=70 Identities=24% Similarity=0.269 Sum_probs=52.3
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCc-hhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNS-SFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~-~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
++....+......|.+.+.+....|.. ....+.++.+++.. ++|+++ |++.+.++++.+.++|+|.+++|
T Consensus 134 e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~-~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 134 EIAAAYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKKAS-GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 334455555666799999886644432 23467888888887 788877 57889999999999999999874
No 476
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=94.89 E-value=0.29 Score=47.57 Aligned_cols=115 Identities=23% Similarity=0.317 Sum_probs=73.6
Q ss_pred HHHHHHHHcCccEEEEeCCCCCc--hhHHHHHHHHHHhC--CCceEEEc------cc-----CC----HHHHHHHHHcCC
Q 010640 251 ERLEHLVKAGVNVVVLDSSQGNS--SFQIEMIKYAKKTY--PELDVIGG------NV-----VT----MYQAQNLIEAGV 311 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~~g~~--~~~~~~i~~l~~~~--~~~~Vi~g------~V-----~t----~e~a~~l~~aGa 311 (505)
...+.++..|+|++.++...|.. ...++.+..+.+.. -+.|+++. .+ .+ ...++...+.|+
T Consensus 101 ~~ve~ai~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGA 180 (265)
T COG1830 101 ATVEDAIRLGADAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGA 180 (265)
T ss_pred eeHHHHHhCCCcEEEEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcC
Confidence 34667788999999887765532 33444444443322 16777762 12 22 234568889999
Q ss_pred CEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCC-HH-----HHHHHHHhCCCEEEecccc
Q 010640 312 DGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISN-SG-----HIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 312 d~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~-~~-----di~kal~lGA~~V~~G~~f 383 (505)
|+|++.- + ...+.+.++...| ++||+.+||=.+ .. -+..++..||.++.+|+-.
T Consensus 181 DIiK~~y-------t--------g~~e~F~~vv~~~---~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNi 240 (265)
T COG1830 181 DIIKTKY-------T--------GDPESFRRVVAAC---GVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNI 240 (265)
T ss_pred CeEeecC-------C--------CChHHHHHHHHhC---CCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhh
Confidence 9998741 1 1124455555554 489999999887 22 2445678999999999864
No 477
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.89 E-value=0.035 Score=55.15 Aligned_cols=87 Identities=13% Similarity=0.169 Sum_probs=65.9
Q ss_pred CCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHHHHHCCC
Q 010640 121 GCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDV 197 (505)
Q Consensus 121 ~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i 197 (505)
..-..+.+.+.. +. +.+++. .++.+|+|+..++.. ..+.+ .+.++..++++.+.+..+.+...
T Consensus 293 ~~~~~al~~~~~~~~~~~~~~~~---~~~~~g~v~~~~~~~---------~~~~~--~~~~v~~d~~~~~~~~~~~~~~~ 358 (386)
T COG4175 293 DGPRVALKLLRDEGREYGYAVDR---GNKFVGVVSIDSLVK---------AALID--DVLTVDADTPLSEILARIRQAPC 358 (386)
T ss_pred cccchhhhhhhhccchhhHHHhc---cCceeeEEeccchhc---------ccccc--cccccCccchHHHHHHHHhcCCC
Confidence 344456666666 43 444554 788999999888732 13444 77888999999999998888766
Q ss_pred CeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 198 DFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 198 ~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
.+||+|+ ++++|+|++..++.++.
T Consensus 359 -p~aVvde~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 359 -PVAVVDEDGRYVGIISRGELLEALA 383 (386)
T ss_pred -ceeEEcCCCcEEEEecHHHHHHHHh
Confidence 5899999 99999999999998864
No 478
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=94.86 E-value=0.12 Score=50.31 Aligned_cols=74 Identities=19% Similarity=0.179 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 300 MYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
.+.|+.+.+.|+|.+.+. .-+. ..+. ......+.++.+. . .|+..+|||++-+|+.+++.+||+-|.
T Consensus 33 ~~~A~~~~~~ga~~lhivDLd~a-------~~g~-~~n~~~i~~i~~~---~-~~v~vGGGIrs~e~~~~~l~~Ga~rvv 100 (241)
T PRK14114 33 AELVEKLIEEGFTLIHVVDLSKA-------IENS-VENLPVLEKLSEF---A-EHIQIGGGIRSLDYAEKLRKLGYRRQI 100 (241)
T ss_pred HHHHHHHHHCCCCEEEEEECCCc-------ccCC-cchHHHHHHHHhh---c-CcEEEecCCCCHHHHHHHHHCCCCEEE
Confidence 355777888999988653 2110 1111 1234455555443 3 699999999999999999999999999
Q ss_pred ecccccC
Q 010640 379 MGSFLAG 385 (505)
Q Consensus 379 ~G~~f~~ 385 (505)
+||..+.
T Consensus 101 igT~a~~ 107 (241)
T PRK14114 101 VSSKVLE 107 (241)
T ss_pred ECchhhC
Confidence 9997543
No 479
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=94.86 E-value=0.074 Score=49.32 Aligned_cols=33 Identities=30% Similarity=0.560 Sum_probs=29.4
Q ss_pred CCcE--EecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 351 GVPV--IADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 351 ~ipv--Ia~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
++|| +++||+.||.|.+-.+.||+|+|.+|+-.
T Consensus 207 rlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgi 241 (296)
T KOG1606|consen 207 RLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGI 241 (296)
T ss_pred CCceEEecccCcCChhHHHHHHHcCCCeEEecccc
Confidence 4777 47899999999999999999999999764
No 480
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=94.71 E-value=0.18 Score=57.39 Aligned_cols=120 Identities=19% Similarity=0.297 Sum_probs=70.8
Q ss_pred HHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCC-CceEEEcccCCHHHHHHHH----Hc---CCCEEEEccCCccee
Q 010640 253 LEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYP-ELDVIGGNVVTMYQAQNLI----EA---GVDGLRVGMGSGSIC 324 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~-~~~Vi~g~V~t~e~a~~l~----~a---Gad~I~v~~g~g~~~ 324 (505)
.+.+.+.|+| +++ ..... . +...|+..+ +..|.+ .+.+.+++..+. .+ |+|++.+|- +.
T Consensus 72 ~~la~~~~~d-VHl--g~~dl--~---~~~~r~~~~~~~~iG~-S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gp----vf 138 (755)
T PRK09517 72 LDVAVELGLH-VHI--GQGDT--P---YTQARRLLPAHLELGL-TIETLDQLEAVIAQCAETGVALPDVIGIGP----VA 138 (755)
T ss_pred HHHHHHcCCC-eec--CCCcC--C---HHHHHHhcCCCCEEEE-eCCCHHHHHHHHhhhccCCCCCCCEEEECC----cc
Confidence 5556677888 544 43321 1 223344432 333333 667887765542 23 499998761 22
Q ss_pred ecccccccC-cChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 325 TTQEVCAVG-RGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 325 ~~~~~~g~g-~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
.|....+.. .-.+..+..+++.++...+||++-||| +..++..++..||++|.+-+.+..+
T Consensus 139 ~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~~Ga~giAvisai~~a 200 (755)
T PRK09517 139 STATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAATGIDGLCVVSAIMAA 200 (755)
T ss_pred ccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhCC
Confidence 221111111 012344555555443334999999999 9999999999999999999888654
No 481
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=94.70 E-value=1.3 Score=42.34 Aligned_cols=125 Identities=17% Similarity=0.147 Sum_probs=84.4
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
.++..+.+..+.+.+.++ .|-.+.- ..-+..++.+++. ++++-+..+.|...|..+..+|+++|.. ..
T Consensus 65 ~e~mi~eA~~l~~~~~nv-~IKIP~T--~~Gl~Ai~~L~~~--GI~vn~T~vfs~~Qa~~Aa~aGa~yIsp-------yv 132 (220)
T PRK12655 65 AQGMVEEAKRLRNAIPGI-VVKIPVT--AEGLAAIKKLKKE--GIPTLGTAVYSAAQGLLAALAGAKYVAP-------YV 132 (220)
T ss_pred HHHHHHHHHHHHHhCCCE-EEEeCCC--HHHHHHHHHHHHC--CCceeEeEecCHHHHHHHHHcCCeEEEe-------ec
Confidence 344556666666665553 3322211 1226677777776 7888887889999999999999998743 22
Q ss_pred cccccccCcChHHHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+|. ...|......+.++.+..+.+ +..|++ ..+++..++.+++.+||+.+-+....+
T Consensus 133 gR~-~~~g~dg~~~i~~~~~~~~~~~~~tkILa-AS~r~~~~v~~~~~~G~d~vTip~~vl 191 (220)
T PRK12655 133 NRV-DAQGGDGIRMVQELQTLLEMHAPESMVLA-ASFKTPRQALDCLLAGCQSITLPLDVA 191 (220)
T ss_pred chH-hHcCCCHHHHHHHHHHHHHhcCCCcEEEE-EecCCHHHHHHHHHcCCCEEECCHHHH
Confidence 232 234455566677777766554 344444 689999999999999999999886543
No 482
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=94.57 E-value=0.43 Score=45.40 Aligned_cols=114 Identities=19% Similarity=0.176 Sum_probs=66.0
Q ss_pred HHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE----ccc---CC-HHH----HHHHHHcCCCEEEEcc
Q 010640 251 ERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG----GNV---VT-MYQ----AQNLIEAGVDGLRVGM 318 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~----g~V---~t-~e~----a~~l~~aGad~I~v~~ 318 (505)
..++.+.+.|+|.+.+|...| .......++.+++. +.++++ .++ .. .+. ++...+.|+++....
T Consensus 71 ~~~~~~~~~gad~vtvh~e~g-~~~l~~~i~~~~~~--g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~- 146 (215)
T PRK13813 71 LICEAVFEAGAWGIIVHGFTG-RDSLKAVVEAAAES--GGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVAP- 146 (215)
T ss_pred HHHHHHHhCCCCEEEEcCcCC-HHHHHHHHHHHHhc--CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEC-
Confidence 344778889999999988755 22344556666654 555533 111 11 111 223334666655332
Q ss_pred CCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHH-HHHHHHHhCCCEEEecccccC
Q 010640 319 GSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSG-HIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 319 g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~-di~kal~lGA~~V~~G~~f~~ 385 (505)
.+.+.-+.++++.... ++ .+.+|||.... ++..++.+||+.+.+|+.+..
T Consensus 147 ---------------~~~~~~i~~l~~~~~~-~~-~ivdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~ 197 (215)
T PRK13813 147 ---------------ATRPERVRYIRSRLGD-EL-KIISPGIGAQGGKAADAIKAGADYVIVGRSIYN 197 (215)
T ss_pred ---------------CCcchhHHHHHHhcCC-Cc-EEEeCCcCCCCCCHHHHHHcCCCEEEECcccCC
Confidence 1112223334333321 22 34889999763 688899999999999998643
No 483
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=94.52 E-value=1.5 Score=46.59 Aligned_cols=131 Identities=18% Similarity=0.223 Sum_probs=81.8
Q ss_pred ceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEE
Q 010640 237 WMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 237 l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v 316 (505)
+.|++.+-..++..+.++.|-.-|...+++ -.| +...+..+-.|.+..|..||+.. .-
T Consensus 127 vvIsAGIP~le~A~ElI~~L~~~G~~yv~f--KPG-tIeqI~svi~IAka~P~~pIilq-------------------~e 184 (717)
T COG4981 127 VVISAGIPSLEEAVELIEELGDDGFPYVAF--KPG-TIEQIRSVIRIAKANPTFPIILQ-------------------WE 184 (717)
T ss_pred EEEecCCCcHHHHHHHHHHHhhcCceeEEe--cCC-cHHHHHHHHHHHhcCCCCceEEE-------------------Ee
Confidence 445566644455666666666678888877 222 33444555556666678888661 11
Q ss_pred cc-CCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHH-----------hCCCEEEeccccc
Q 010640 317 GM-GSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALV-----------LGASTVMMGSFLA 384 (505)
Q Consensus 317 ~~-g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~-----------lGA~~V~~G~~f~ 384 (505)
+. +||.+++. .+ .-+.+.+-.+++ +..++-++..|||.++.|.+..|. +--|++.+||+..
T Consensus 185 gGraGGHHSwe-Dl---d~llL~tYs~lR---~~~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaM 257 (717)
T COG4981 185 GGRAGGHHSWE-DL---DDLLLATYSELR---SRDNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAM 257 (717)
T ss_pred cCccCCccchh-hc---ccHHHHHHHHHh---cCCCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHH
Confidence 22 23333332 22 224444443333 234689999999999999887652 3468999999999
Q ss_pred CCCCCCccceee
Q 010640 385 GSTEAPGAYVYQ 396 (505)
Q Consensus 385 ~~~Es~~~~~~~ 396 (505)
.++|+.+...-|
T Consensus 258 atKEatTSp~vK 269 (717)
T COG4981 258 ATKEATTSPAVK 269 (717)
T ss_pred hhhhccCCHHHH
Confidence 999998776554
No 484
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=94.48 E-value=0.25 Score=52.30 Aligned_cols=132 Identities=15% Similarity=0.156 Sum_probs=81.0
Q ss_pred CcceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccC----CHHHHHHHHHcC
Q 010640 235 GKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVV----TMYQAQNLIEAG 310 (505)
Q Consensus 235 ~~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~----t~e~a~~l~~aG 310 (505)
.+++++.+....++..+.++.+++.|++++++..+. ......+.++.+++.++. +.++..+. -...+..+.++|
T Consensus 4 ~~l~~alD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~-~~~~~~~~i~~l~~~~~~-~~ii~D~kl~d~g~~~v~~a~~aG 81 (430)
T PRK07028 4 PILQVALDLLELDRAVEIAKEAVAGGADWIEAGTPL-IKSEGMNAIRTLRKNFPD-HTIVADMKTMDTGAIEVEMAAKAG 81 (430)
T ss_pred ceEEEEeccCCHHHHHHHHHHHHhcCCcEEEeCCHH-HHHhhHHHHHHHHHHCCC-CEEEEEeeeccchHHHHHHHHHcC
Confidence 457777777667778888888899999999874211 112235677777777633 33332211 123788899999
Q ss_pred CCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEec-CCCCCH-HHHHHHHHhCCCEEEecccc
Q 010640 311 VDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIAD-GGISNS-GHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 311 ad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~-GGI~~~-~di~kal~lGA~~V~~G~~f 383 (505)
+|++.+-. .+....+.++.+.+++.+++++.. -...+. ..+.++..+|+|.+.++..|
T Consensus 82 AdgV~v~g---------------~~~~~~~~~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~pg~ 141 (430)
T PRK07028 82 ADIVCILG---------------LADDSTIEDAVRAARKYGVRLMADLINVPDPVKRAVELEELGVDYINVHVGI 141 (430)
T ss_pred CCEEEEec---------------CCChHHHHHHHHHHHHcCCEEEEEecCCCCHHHHHHHHHhcCCCEEEEEecc
Confidence 99986420 011111234455566677888761 133332 33567778999999877544
No 485
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=94.37 E-value=0.6 Score=44.59 Aligned_cols=111 Identities=17% Similarity=0.160 Sum_probs=70.7
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE---ccc--------CCHHHHHHHHHcCCCEEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG---GNV--------VTMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~---g~V--------~t~e~a~~l~~aGad~I~v 316 (505)
...+.++.+.++|+.++.+ + ..+.++.+++.. ++|++. ... .+.+.++.+.++|+|+|.+
T Consensus 28 ~i~~~a~~~~~~G~~~~~~----~----~~~~~~~i~~~~-~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~ 98 (219)
T cd04729 28 IMAAMALAAVQGGAVGIRA----N----GVEDIRAIRARV-DLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIAL 98 (219)
T ss_pred HHHHHHHHHHHCCCeEEEc----C----CHHHHHHHHHhC-CCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEE
Confidence 4567788888999988764 1 235566666653 677752 221 1356889999999998866
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcC-CcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSG-VPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~-ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
..... ..|.-..+.++.+.+++.+ +|++. ++.+..++..+..+|++.+.+.
T Consensus 99 ~~~~~-----------~~p~~~~~~~~i~~~~~~g~~~iiv--~v~t~~ea~~a~~~G~d~i~~~ 150 (219)
T cd04729 99 DATDR-----------PRPDGETLAELIKRIHEEYNCLLMA--DISTLEEALNAAKLGFDIIGTT 150 (219)
T ss_pred eCCCC-----------CCCCCcCHHHHHHHHHHHhCCeEEE--ECCCHHHHHHHHHcCCCEEEcc
Confidence 42100 0111011223333333344 88888 8999999999999999998653
No 486
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=94.33 E-value=0.83 Score=46.48 Aligned_cols=115 Identities=21% Similarity=0.202 Sum_probs=66.0
Q ss_pred HHHHHHHHHHcCc-cEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcc-cCCHHHHHHHHHcCCCEEEEccCCcceeec
Q 010640 249 DKERLEHLVKAGV-NVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGN-VVTMYQAQNLIEAGVDGLRVGMGSGSICTT 326 (505)
Q Consensus 249 ~~e~~~~lieaGa-d~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~-V~t~e~a~~l~~aGad~I~v~~g~g~~~~~ 326 (505)
..+.+..+.++|. -++. .. .......+.+++++..+ .+...++. ....+.+..+.++|+++|.+....|
T Consensus 47 ~~~ma~ava~~GglGvi~--~~-~~~~~~~~~i~~vk~~l-~v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G----- 117 (325)
T cd00381 47 ESEMAIAMARLGGIGVIH--RN-MSIEEQAEEVRKVKGRL-LVGAAVGTREDDKERAEALVEAGVDVIVIDSAHG----- 117 (325)
T ss_pred cHHHHHHHHHCCCEEEEe--CC-CCHHHHHHHHHHhccCc-eEEEecCCChhHHHHHHHHHhcCCCEEEEECCCC-----
Confidence 3455666667764 4442 22 22233444555444332 22222221 1235678889999999998753211
Q ss_pred ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
........+..+++... ++||++ |.+.+..++.+++.+|||++.+|
T Consensus 118 -----~~~~~~~~i~~ik~~~p--~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 118 -----HSVYVIEMIKFIKKKYP--NVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred -----CcHHHHHHHHHHHHHCC--CceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 11112233333333221 388888 99999999999999999999884
No 487
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=94.31 E-value=0.081 Score=55.01 Aligned_cols=70 Identities=4% Similarity=0.070 Sum_probs=53.7
Q ss_pred EEEeccccccccc--cccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhc
Q 010640 149 GYVTKSDWENLSD--NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKG 222 (505)
Q Consensus 149 Givt~~Dl~~~~~--~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~ 222 (505)
|+++..+...... ....+.+ +.. ...++++++++.+++..+.+.+.. +||+|+|+++|+|++.+++.++.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 309 QVRRRDAKLPVQAWAAEQEVES-LEA--APTVINPDTLMRDVLAARHRTGGA-ILLVENGRIVGVIGDDNIYHALL 380 (382)
T ss_pred ceecccchHhHhhcccccchhh-hcc--cCcccCCCCcHHHHHHHHhcCCCC-eEEeeCCeEEEEEeHHHHHHHHh
Confidence 7787766542111 2334666 444 788899999999999998887764 88998899999999999998763
No 488
>PRK08185 hypothetical protein; Provisional
Probab=94.27 E-value=2 Score=42.75 Aligned_cols=130 Identities=20% Similarity=0.320 Sum_probs=83.8
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCC--CceE------EEc---c---------cCCHHHHHHHHH
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYP--ELDV------IGG---N---------VVTMYQAQNLIE 308 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~--~~~V------i~g---~---------V~t~e~a~~l~~ 308 (505)
..+.++.+++.|.+-+.+|.++-.....++..+++.+... +++| +.+ . ..++++|..+.+
T Consensus 80 ~~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~ 159 (283)
T PRK08185 80 TIEDVMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVS 159 (283)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHH
Confidence 4677888899999999999877544445555555543221 3322 111 0 347889988887
Q ss_pred c-CCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCC-HHHHHHHHHhCCCEEEecccc
Q 010640 309 A-GVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISN-SGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 309 a-Gad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~-~~di~kal~lGA~~V~~G~~f 383 (505)
. |+|++-+++|.....+.... ...+ .+..+.++++ ..++|+++=||... ..++.+|..+|..=|=++|-+
T Consensus 160 ~TgvD~LAvaiGt~HG~y~~~~-kp~L-~~e~l~~I~~---~~~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~T~l 231 (283)
T PRK08185 160 RTGVDTLAVAIGTAHGIYPKDK-KPEL-QMDLLKEINE---RVDIPLVLHGGSANPDAEIAESVQLGVGKINISSDM 231 (283)
T ss_pred hhCCCEEEeccCcccCCcCCCC-CCCc-CHHHHHHHHH---hhCCCEEEECCCCCCHHHHHHHHHCCCeEEEeChHH
Confidence 6 99999998654332221100 0011 2445555544 45799999999854 567788999999999999876
No 489
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=94.26 E-value=1.7 Score=40.16 Aligned_cols=121 Identities=21% Similarity=0.264 Sum_probs=77.6
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceE--EEcccCCHHHHHHHHHcCCCEEEE-ccCCccee
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDV--IGGNVVTMYQAQNLIEAGVDGLRV-GMGSGSIC 324 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~V--i~g~V~t~e~a~~l~~aGad~I~v-~~g~g~~~ 324 (505)
...++++.+..+|++.+.+|...-. .+.+.++.+|+. +..+ .++.-+..+....+.+ -+|.+-| ...+|
T Consensus 75 ~Peq~V~~~a~agas~~tfH~E~~q--~~~~lv~~ir~~--Gmk~G~alkPgT~Ve~~~~~~~-~~D~vLvMtVePG--- 146 (224)
T KOG3111|consen 75 NPEQWVDQMAKAGASLFTFHYEATQ--KPAELVEKIREK--GMKVGLALKPGTPVEDLEPLAE-HVDMVLVMTVEPG--- 146 (224)
T ss_pred CHHHHHHHHHhcCcceEEEEEeecc--CHHHHHHHHHHc--CCeeeEEeCCCCcHHHHHHhhc-cccEEEEEEecCC---
Confidence 3567888899999999999874322 356788888887 4443 3344456666655544 4666644 33322
Q ss_pred ecccccccC-cC-hHHHHHHHHHHHhhcCCcEE-ecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 325 TTQEVCAVG-RG-QATAVYKVSSIAAQSGVPVI-ADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 325 ~~~~~~g~g-~p-~~~~l~~v~~~~~~~~ipvI-a~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+| .. +.+.+.-+...+.++.-+.| .|||+ ++..+-++..+||++...||...
T Consensus 147 -------FGGQkFme~mm~KV~~lR~kyp~l~ievDGGv-~~~ti~~~a~AGAN~iVaGsavf 201 (224)
T KOG3111|consen 147 -------FGGQKFMEDMMPKVEWLREKYPNLDIEVDGGV-GPSTIDKAAEAGANMIVAGSAVF 201 (224)
T ss_pred -------CchhhhHHHHHHHHHHHHHhCCCceEEecCCc-CcchHHHHHHcCCCEEEecceee
Confidence 21 11 12334444444445544455 88996 56789999999999999999753
No 490
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=94.19 E-value=0.24 Score=49.75 Aligned_cols=80 Identities=23% Similarity=0.304 Sum_probs=57.0
Q ss_pred ceEEEeecC-CccHHHHHHHHHHcCccEEEEeCCC-------------------CCc-h----hHHHHHHHHHHhCCCce
Q 010640 237 WMVGAAIGT-RESDKERLEHLVKAGVNVVVLDSSQ-------------------GNS-S----FQIEMIKYAKKTYPELD 291 (505)
Q Consensus 237 l~v~a~i~~-~~~~~e~~~~lieaGad~I~i~~~~-------------------g~~-~----~~~~~i~~l~~~~~~~~ 291 (505)
+.+.+.+.. .++..+.++.+.++|+|.++++.+. |.+ . ..++.+..+++.. ++|
T Consensus 158 ~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~-~ip 236 (300)
T TIGR01037 158 VPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV-DIP 236 (300)
T ss_pred CCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC-CCC
Confidence 345555542 2346677888889999999885321 111 0 1246777787776 688
Q ss_pred EEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 292 VIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 292 Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
|+. |++.+.+++.+++.+|||++.++
T Consensus 237 vi~~GGI~s~~da~~~l~~GAd~V~ig 263 (300)
T TIGR01037 237 IIGVGGITSFEDALEFLMAGASAVQVG 263 (300)
T ss_pred EEEECCCCCHHHHHHHHHcCCCceeec
Confidence 875 89999999999999999999775
No 491
>PRK12376 putative translaldolase; Provisional
Probab=94.15 E-value=2 Score=41.54 Aligned_cols=126 Identities=16% Similarity=0.195 Sum_probs=81.2
Q ss_pred ccHHHHHHHHHHcCccEEE-EeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHc----CCCEEEEccCCc
Q 010640 247 ESDKERLEHLVKAGVNVVV-LDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEA----GVDGLRVGMGSG 321 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~-i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~a----Gad~I~v~~g~g 321 (505)
++..+.+..+.+.+.++++ +-.+......-+..++.+.+. ++++-+.-+.|...+..+..+ |++++.
T Consensus 71 ~~mv~eA~~l~~~~~nv~VKIP~T~~~G~~gl~Ai~~L~~~--GI~vn~T~vfs~~Qa~~a~~A~ag~ga~yis------ 142 (236)
T PRK12376 71 ETMEKEAEKIASLGENVYVKIPITNTKGESTIPLIKKLSAD--GVKLNVTAIFTIEQVKEVVDALTPGVPAIVS------ 142 (236)
T ss_pred HHHHHHHHHHHHhCCCeEEEECCcCccchhHHHHHHHHHHC--CCeEEEeeecCHHHHHHHHHHhcCCCCeEEE------
Confidence 4455666667666665442 322210111235667777776 788877778899999766555 577773
Q ss_pred ceeecccccccCcChHHHHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 322 SICTTQEVCAVGRGQATAVYKVSSIAAQS-GVPVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 322 ~~~~~~~~~g~g~p~~~~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
+..+|. .+.|......+.++.+..+.+ +..|++ ..+++..++.+++.+||+.+-++.-+
T Consensus 143 -pfvgR~-dd~g~D~~~~i~~i~~i~~~~~~tkILa-ASiR~~~~v~~a~~~Gad~vTvp~~v 202 (236)
T PRK12376 143 -VFAGRI-ADTGVDPVPLMKEALAICHSKPGVELLW-ASPREVYNIIQADQLGCDIITVTPDV 202 (236)
T ss_pred -Eecchh-hhcCCCcHHHHHHHHHHHHhCCCcEEEE-EecCCHHHHHHHHHcCCCEEEcCHHH
Confidence 233332 234555566666666665443 455665 58999999999999999999988554
No 492
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=94.08 E-value=0.28 Score=49.31 Aligned_cols=212 Identities=15% Similarity=0.073 Sum_probs=122.6
Q ss_pred HHhhccCCCCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhh------HHHHHHHHHHcCCeeEEcC-
Q 010640 15 DRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVT------EDYMAAAMAALGGIGIVHS- 87 (505)
Q Consensus 15 ~~~~~~~~~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt------~~~ma~al~~~Gg~g~i~~- 87 (505)
+.-|..| ...|+++.++|.. ....+++|+.+++. +.++..|++.++|+..+ +..++.+..+.|..+.+..
T Consensus 26 ~~~~~~n-~~~~~~i~~~~~~-l~~~~~id~~~~~l-g~~~~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~~~~~~~~ 102 (299)
T cd02809 26 EVTLRRN-RAAFDRIRLRPRV-LRDVSKRDTSTTLL-GQKLAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTV 102 (299)
T ss_pred HHHHHHH-HHHHHhceeeccc-CCCCCCCCCceEEC-CeecCCCeeeCcccccccCCchHHHHHHHHHHHcCCCEEecCC
Confidence 3345555 4569999999955 22345889999997 77889999999996543 4677888888888776653
Q ss_pred -CCCHHHHHHHHHhhhccCCccccCCCeeEeCCC---CCHHHHHHHhcC-Ce-EEEEeCCCCCCeEEEEEeccccccccc
Q 010640 88 -NCTAADQARLVVSAKSRRVPIFSSSLDVFKAPD---GCINDANDFDGS-NY-VFVTESGTRRSRILGYVTKSDWENLSD 161 (505)
Q Consensus 88 -~~~~~~~~~~v~~v~~~~~~~~~~p~~~~v~~~---~tv~~a~~~~~~-~~-~pVvd~~~~~g~lvGivt~~Dl~~~~~ 161 (505)
..+.++. ++. .. .|..+.+... ....+.++...+ +. ...++-
T Consensus 103 ~~~~~~~i----~~~---~~----~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~--------------------- 150 (299)
T cd02809 103 STTSLEEV----AAA---AP----GPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTV--------------------- 150 (299)
T ss_pred CcCCHHHH----HHh---cC----CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEec---------------------
Confidence 2333332 111 11 2311222111 223333333333 33 222210
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEE
Q 010640 162 NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGA 241 (505)
Q Consensus 162 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a 241 (505)
.. +.. ......+.++.+.+. . .+||+ +
T Consensus 151 ---------~~--p~~---~~~~~~~~i~~l~~~-~-~~pvi-------------------------------------v 177 (299)
T cd02809 151 ---------DT--PVL---GRRLTWDDLAWLRSQ-W-KGPLI-------------------------------------L 177 (299)
T ss_pred ---------CC--CCC---CCCCCHHHHHHHHHh-c-CCCEE-------------------------------------E
Confidence 00 000 000112333333331 0 02332 1
Q ss_pred eecCCccHHHHHHHHHHcCccEEEEeCCCCCc----hhHHHHHHHHHHhCC-CceEEE-cccCCHHHHHHHHHcCCCEEE
Q 010640 242 AIGTRESDKERLEHLVKAGVNVVVLDSSQGNS----SFQIEMIKYAKKTYP-ELDVIG-GNVVTMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 242 ~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~----~~~~~~i~~l~~~~~-~~~Vi~-g~V~t~e~a~~l~~aGad~I~ 315 (505)
... ...+.+..+.++|+|+|.++...|.. ...++.+..+++.++ ++||++ |++.+..++.+++.+|||++.
T Consensus 178 K~v---~s~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ 254 (299)
T cd02809 178 KGI---LTPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVL 254 (299)
T ss_pred eec---CCHHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 110 12356788899999999997644322 245777777877664 588877 899999999999999999998
Q ss_pred Ec
Q 010640 316 VG 317 (505)
Q Consensus 316 v~ 317 (505)
++
T Consensus 255 ig 256 (299)
T cd02809 255 IG 256 (299)
T ss_pred Ec
Confidence 76
No 493
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=94.07 E-value=0.87 Score=44.52 Aligned_cols=67 Identities=28% Similarity=0.373 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCccE---EEEeCCCCCc----hhHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEEc
Q 010640 249 DKERLEHLVKAGVNV---VVLDSSQGNS----SFQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 249 ~~e~~~~lieaGad~---I~i~~~~g~~----~~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v~ 317 (505)
..++++.+.+..-.+ +......|.. ..+.+.++++|+.. ++|+.+| ++.++++++++.++ +|+++||
T Consensus 159 ~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVG 233 (265)
T COG0159 159 PDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT-DVPVLVGFGISSPEQAAQVAEA-ADGVIVG 233 (265)
T ss_pred CHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhc-CCCeEEecCcCCHHHHHHHHHh-CCeEEEc
Confidence 446666666654222 3333333432 23678889998887 8999998 88999999999999 9999986
No 494
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=94.02 E-value=2 Score=41.13 Aligned_cols=125 Identities=18% Similarity=0.227 Sum_probs=81.2
Q ss_pred CccHHHHHHHHHH-cCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCccee
Q 010640 246 RESDKERLEHLVK-AGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSIC 324 (505)
Q Consensus 246 ~~~~~e~~~~lie-aGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~ 324 (505)
.++..+.+..+.+ .+.+++ +-.+. ...-+..++.+++. ++++-+.-+.|.+.+..+.++|+++|.. .
T Consensus 66 ~~~mi~eA~~l~~~~~~nv~-VKIP~--T~~Gl~Ai~~L~~~--Gi~vn~T~ifs~~Qa~~Aa~aGa~yvsP-------y 133 (222)
T PRK12656 66 YEGILKDAHEIRRQCGDDVY-IKVPV--TPAGLAAIKTLKAE--GYHITATAIYTVFQGLLAIEAGADYLAP-------Y 133 (222)
T ss_pred HHHHHHHHHHHHHHhCCCEE-EEeCC--CHHHHHHHHHHHHC--CCceEEeeeCCHHHHHHHHHCCCCEEec-------c
Confidence 3445566666653 354333 22221 12236677777776 7888887889999999999999998732 2
Q ss_pred ecccccccCcChHHHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 325 TTQEVCAVGRGQATAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 325 ~~~~~~g~g~p~~~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
.+|. .+.|......+.++.+..+.. +..|++ -.+++..++..+..+||+.+-+...++
T Consensus 134 vgRi-~d~g~D~~~~i~~i~~~~~~~~~~tkILa-AS~r~~~~v~~a~~~G~d~vTvp~~vl 193 (222)
T PRK12656 134 YNRM-ENLNIDSNAVIGQLAEAIDRENSDSKILA-ASFKNVAQVNKAFALGAQAVTAGPDVF 193 (222)
T ss_pred cchh-hhcCCCHHHHHHHHHHHHHhcCCCCEEEE-EecCCHHHHHHHHHcCCCEEecCHHHH
Confidence 2332 223444445555555554433 344444 589999999999999999999986553
No 495
>PLN02591 tryptophan synthase
Probab=93.87 E-value=0.82 Score=44.62 Aligned_cols=68 Identities=24% Similarity=0.304 Sum_probs=48.0
Q ss_pred HHHHHHHHHHcCccEEEE---eCCCC----CchhHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEEc
Q 010640 249 DKERLEHLVKAGVNVVVL---DSSQG----NSSFQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i---~~~~g----~~~~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v~ 317 (505)
..++++.+.+..-.++-+ ....| ......+.++.+|+.. +.|+++| ++.+.++++.+.+.|+|++.|+
T Consensus 143 ~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~-~~Pv~vGFGI~~~e~v~~~~~~GADGvIVG 218 (250)
T PLN02591 143 PTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVT-DKPVAVGFGISKPEHAKQIAGWGADGVIVG 218 (250)
T ss_pred CHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcC-CCceEEeCCCCCHHHHHHHHhcCCCEEEEC
Confidence 345666666655444433 22222 2345667788888864 8999887 6778999999999999999986
No 496
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=93.87 E-value=0.95 Score=45.76 Aligned_cols=113 Identities=12% Similarity=0.132 Sum_probs=69.2
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCC-CceEEEcccC---CHHHHHHHHHcC--CCEEEEccCCcc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYP-ELDVIGGNVV---TMYQAQNLIEAG--VDGLRVGMGSGS 322 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~-~~~Vi~g~V~---t~e~a~~l~~aG--ad~I~v~~g~g~ 322 (505)
..+.++.+.+.|.-.+... . ..+.+.+ .+++.-+ .+++.++--. +.+.+..+.++| +|+|.+..
T Consensus 47 n~~LA~~a~~~G~~~i~hK--~-~~E~~~s---fvrk~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~---- 116 (321)
T TIGR01306 47 DEKLAEQLAENGYFYIMHR--F-DEESRIP---FIKDMQERGLFASISVGVKACEYEFVTQLAEEALTPEYITIDI---- 116 (321)
T ss_pred hHHHHHHHHHcCCEEEEec--C-CHHHHHH---HHHhccccccEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeC----
Confidence 4566777777776555432 1 2233333 3444322 2344332222 345677888888 79987742
Q ss_pred eeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 323 ICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 323 ~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
..|+....+..+..+++ ....|.+..|++.++.++..++.+|||++.+|
T Consensus 117 ------ahg~s~~~~~~i~~i~~---~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 117 ------AHGHSNSVINMIKHIKT---HLPDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred ------ccCchHHHHHHHHHHHH---hCCCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 12333344555555544 34567777788999999999999999999877
No 497
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=93.84 E-value=0.23 Score=48.36 Aligned_cols=73 Identities=15% Similarity=0.086 Sum_probs=49.9
Q ss_pred HHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 301 YQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 301 e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
+.++...+.|++.+-+. ..+ ..+. .+....+.++. +...+|+..+|||++.+|+.+++.+||+-|.+
T Consensus 35 ~~a~~~~~~g~~~lhivDLd~--------a~g~-~~n~~~i~~i~---~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvi 102 (243)
T TIGR01919 35 SAAKWWEQGGAEWIHLVDLDA--------AFGG-GNNEMMLEEVV---KLLVVVEELSGGRRDDSSLRAALTGGRARVNG 102 (243)
T ss_pred HHHHHHHhCCCeEEEEEECCC--------CCCC-cchHHHHHHHH---HHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEE
Confidence 44555667788766553 110 0111 13344454444 44568999999999999999999999999999
Q ss_pred cccccC
Q 010640 380 GSFLAG 385 (505)
Q Consensus 380 G~~f~~ 385 (505)
||..+.
T Consensus 103 gT~a~~ 108 (243)
T TIGR01919 103 GTAALE 108 (243)
T ss_pred CchhhC
Confidence 998553
No 498
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=93.83 E-value=0.26 Score=47.62 Aligned_cols=75 Identities=16% Similarity=0.218 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 300 MYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
.+.|+.+.+.|++.+.+. ..+. .+. .+....+.++.+. ...|+..+|||++..|+.+++.+||+-|.
T Consensus 33 ~~~a~~~~~~ga~~lhivDLd~a--------~~~-~~n~~~i~~i~~~---~~~~v~vGGGIrs~e~~~~~l~~Ga~kvv 100 (232)
T PRK13586 33 IEIASKLYNEGYTRIHVVDLDAA--------EGV-GNNEMYIKEISKI---GFDWIQVGGGIRDIEKAKRLLSLDVNALV 100 (232)
T ss_pred HHHHHHHHHCCCCEEEEEECCCc--------CCC-cchHHHHHHHHhh---CCCCEEEeCCcCCHHHHHHHHHCCCCEEE
Confidence 356677778899888663 2110 011 1334444444432 22599999999999999999999999999
Q ss_pred ecccccCC
Q 010640 379 MGSFLAGS 386 (505)
Q Consensus 379 ~G~~f~~~ 386 (505)
+||..+..
T Consensus 101 igt~a~~~ 108 (232)
T PRK13586 101 FSTIVFTN 108 (232)
T ss_pred ECchhhCC
Confidence 99986544
No 499
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=93.82 E-value=0.48 Score=47.14 Aligned_cols=90 Identities=13% Similarity=0.137 Sum_probs=62.7
Q ss_pred CceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccC-cChHHHHHHHHHHHhhcCCcEEecC--CCCCHHH
Q 010640 289 ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVG-RGQATAVYKVSSIAAQSGVPVIADG--GISNSGH 365 (505)
Q Consensus 289 ~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g-~p~~~~l~~v~~~~~~~~ipvIa~G--GI~~~~d 365 (505)
.-+++.-++-+.-.|+.+.++|.+++.++..+-+. .....+.| .+.-+.+..+++.++..++||++|. |-.++.+
T Consensus 12 ~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~--~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~ 89 (285)
T TIGR02317 12 EDILQIPGAINAMAALLAERAGFEAIYLSGAAVAA--SLGLPDLGITTLDEVAEDARRITRVTDLPLLVDADTGFGEAFN 89 (285)
T ss_pred CCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHH--hCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHH
Confidence 45788889999999999999999999887332221 11222222 2333445555666677789999995 7777777
Q ss_pred H----HHHHHhCCCEEEec
Q 010640 366 I----VKALVLGASTVMMG 380 (505)
Q Consensus 366 i----~kal~lGA~~V~~G 380 (505)
+ .+...+||.++.+=
T Consensus 90 v~~tv~~~~~aG~agi~IE 108 (285)
T TIGR02317 90 VARTVREMEDAGAAAVHIE 108 (285)
T ss_pred HHHHHHHHHHcCCeEEEEe
Confidence 4 45568999999874
No 500
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=93.77 E-value=0.32 Score=49.51 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=53.2
Q ss_pred cHHHHHHHHHHcCccEEEEeCCC----------------CCch-----hHHHHHHHHHHhCC-CceEE-EcccCCHHHHH
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQ----------------GNSS-----FQIEMIKYAKKTYP-ELDVI-GGNVVTMYQAQ 304 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~----------------g~~~-----~~~~~i~~l~~~~~-~~~Vi-~g~V~t~e~a~ 304 (505)
+..+.++.+.++|+|.+.++.+. |.+. ..+++++.+++..+ ++||+ +|+|.|.+++.
T Consensus 217 ~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~ 296 (327)
T cd04738 217 ELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAY 296 (327)
T ss_pred HHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHH
Confidence 45667788888999999876521 2221 23678888888764 57886 48999999999
Q ss_pred HHHHcCCCEEEEc
Q 010640 305 NLIEAGVDGLRVG 317 (505)
Q Consensus 305 ~l~~aGad~I~v~ 317 (505)
+++.+|||++.++
T Consensus 297 e~l~aGAd~V~vg 309 (327)
T cd04738 297 EKIRAGASLVQLY 309 (327)
T ss_pred HHHHcCCCHHhcc
Confidence 9999999999765
Done!