BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010642
(505 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 7/114 (6%)
Query: 222 FGAMQRAGVFPDDQTFT-GVLSACSHCGLVDEGMMFLD--RMSKDFGILPNIHHYGCVVD 278
F M V P++ TFT G A + D+ M D + K FGI P + YG +
Sbjct: 93 FKQMIVDKVVPNEATFTNGARLAVAK----DDPEMAFDMVKQMKAFGIQPRLRSYGPALF 148
Query: 279 LLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELK 332
R G D+AY++ M L ++ ++V + L L+
Sbjct: 149 GFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLR 202
>pdb|1W79|A Chain A, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W79|B Chain B, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W79|C Chain C, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W79|D Chain D, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W8Q|A Chain A, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W8Q|B Chain B, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W8Q|C Chain C, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W8Q|D Chain D, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W8Y|A Chain A, Crystal Structure Of The Nitrocefin Acyl-Dd-Peptidase From
Actinomadura R39.
pdb|1W8Y|B Chain B, Crystal Structure Of The Nitrocefin Acyl-Dd-Peptidase From
Actinomadura R39.
pdb|1W8Y|C Chain C, Crystal Structure Of The Nitrocefin Acyl-Dd-Peptidase From
Actinomadura R39.
pdb|1W8Y|D Chain D, Crystal Structure Of The Nitrocefin Acyl-Dd-Peptidase From
Actinomadura R39.
pdb|2VGJ|A Chain A, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2VGJ|B Chain B, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2VGJ|C Chain C, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2VGJ|D Chain D, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2VGK|A Chain A, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2VGK|B Chain B, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2VGK|C Chain C, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2VGK|D Chain D, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2XLN|A Chain A, Crystal Structure Of A Complex Between Actinomadura R39
Dd-Peptidase And A Boronate Inhibitor
pdb|2XLN|B Chain B, Crystal Structure Of A Complex Between Actinomadura R39
Dd-Peptidase And A Boronate Inhibitor
pdb|2XLN|C Chain C, Crystal Structure Of A Complex Between Actinomadura R39
Dd-Peptidase And A Boronate Inhibitor
pdb|2XLN|D Chain D, Crystal Structure Of A Complex Between Actinomadura R39
Dd-Peptidase And A Boronate Inhibitor
Length = 489
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 212 NGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIH 271
NGH ++S G + AG D GV A S G+ G++ D G N+
Sbjct: 300 NGHAEMLVKSIG-QETAGAGTWDAGLVGVEEALSGLGVDTAGLVLNDGSGLSRG---NLV 355
Query: 272 HYGCVVDLLGRAGLLDQAYQLITSMGVKPDS 302
VVDLLG+AG A S+ V +S
Sbjct: 356 TADTVVDLLGQAGSAPWAQTWSASLPVAGES 386
>pdb|2WKE|A Chain A, Crystal Structure Of The Actinomadura R39 Dd-Peptidase
Inhibited By 6-Beta-Iodopenicillanate.
pdb|2WKE|B Chain B, Crystal Structure Of The Actinomadura R39 Dd-Peptidase
Inhibited By 6-Beta-Iodopenicillanate.
pdb|2WKE|C Chain C, Crystal Structure Of The Actinomadura R39 Dd-Peptidase
Inhibited By 6-Beta-Iodopenicillanate.
pdb|2WKE|D Chain D, Crystal Structure Of The Actinomadura R39 Dd-Peptidase
Inhibited By 6-Beta-Iodopenicillanate.
pdb|2XDM|A Chain A, Crystal Structure Of A Complex Between Actinomadura R39 Dd
Peptidase And A Peptidoglycan Mimetic Boronate Inhibitor
pdb|2XDM|B Chain B, Crystal Structure Of A Complex Between Actinomadura R39 Dd
Peptidase And A Peptidoglycan Mimetic Boronate Inhibitor
pdb|2XDM|C Chain C, Crystal Structure Of A Complex Between Actinomadura R39 Dd
Peptidase And A Peptidoglycan Mimetic Boronate Inhibitor
pdb|2XDM|D Chain D, Crystal Structure Of A Complex Between Actinomadura R39 Dd
Peptidase And A Peptidoglycan Mimetic Boronate Inhibitor
pdb|2XK1|A Chain A, Crystal Structure Of A Complex Between Actinomadura R39
Dd- Peptidase And A Boronate Inhibitor
pdb|2XK1|B Chain B, Crystal Structure Of A Complex Between Actinomadura R39
Dd- Peptidase And A Boronate Inhibitor
pdb|2XK1|C Chain C, Crystal Structure Of A Complex Between Actinomadura R39
Dd- Peptidase And A Boronate Inhibitor
pdb|2XK1|D Chain D, Crystal Structure Of A Complex Between Actinomadura R39
Dd- Peptidase And A Boronate Inhibitor
pdb|2Y4A|A Chain A, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y4A|B Chain B, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y4A|C Chain C, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y4A|D Chain D, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y55|A Chain A, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y55|B Chain B, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y55|C Chain C, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y55|D Chain D, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y59|A Chain A, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y59|B Chain B, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y59|C Chain C, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y59|D Chain D, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVT|A Chain A, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVT|B Chain B, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVT|C Chain C, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVT|D Chain D, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVW|A Chain A, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVW|B Chain B, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVW|C Chain C, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVW|D Chain D, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
Length = 466
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 212 NGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIH 271
NGH ++S G + AG D GV A S G+ G++ D G N+
Sbjct: 300 NGHAEMLVKSIG-QETAGAGTWDAGLVGVEEALSGLGVDTAGLVLNDGSGLSRG---NLV 355
Query: 272 HYGCVVDLLGRAGLLDQAYQLITSMGVKPDS 302
VVDLLG+AG A S+ V +S
Sbjct: 356 TADTVVDLLGQAGSAPWAQTWSASLPVAGES 386
>pdb|2FE3|A Chain A, The Crystal Structure Of Bacillus Subtilis Perr-Zn Reveals
A Novel Zn(Cys)4 Structural Redox Switch
pdb|2FE3|B Chain B, The Crystal Structure Of Bacillus Subtilis Perr-Zn Reveals
A Novel Zn(Cys)4 Structural Redox Switch
pdb|3F8N|A Chain A, Crystal Structure Of Perr-Zn-Mn
pdb|3F8N|B Chain B, Crystal Structure Of Perr-Zn-Mn
Length = 145
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 354 KVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLD 403
++KE E + E G++ TP + + E++V+ ++HP ++IY+ L+
Sbjct: 5 ELKEALETLKETGVRITPQ------RHAILEYLVNSMAHPTADDIYKALE 48
>pdb|3ECJ|A Chain A, Structure Of E323l Mutant Of Homoprotocatechuate
2,3-Dioxygenase From Brevibacterium Fuscum At 1.65a
Resolution
pdb|3ECJ|B Chain B, Structure Of E323l Mutant Of Homoprotocatechuate
2,3-Dioxygenase From Brevibacterium Fuscum At 1.65a
Resolution
pdb|3ECJ|C Chain C, Structure Of E323l Mutant Of Homoprotocatechuate
2,3-Dioxygenase From Brevibacterium Fuscum At 1.65a
Resolution
pdb|3ECJ|D Chain D, Structure Of E323l Mutant Of Homoprotocatechuate
2,3-Dioxygenase From Brevibacterium Fuscum At 1.65a
Resolution
pdb|3ECK|A Chain A, Structure Of E323l Homoprotocatechuate 2,3-Dioxygenase
From Brevibacterium Fuscum In Complex With Putative O-O
Bond Cleavage Intermediate Formed Via In Crystallo
Reaction With 4-Sulfonyl Catechol At Low Oxygen
Concentrations
pdb|3ECK|B Chain B, Structure Of E323l Homoprotocatechuate 2,3-Dioxygenase
From Brevibacterium Fuscum In Complex With Putative O-O
Bond Cleavage Intermediate Formed Via In Crystallo
Reaction With 4-Sulfonyl Catechol At Low Oxygen
Concentrations
pdb|3ECK|C Chain C, Structure Of E323l Homoprotocatechuate 2,3-Dioxygenase
From Brevibacterium Fuscum In Complex With Putative O-O
Bond Cleavage Intermediate Formed Via In Crystallo
Reaction With 4-Sulfonyl Catechol At Low Oxygen
Concentrations
pdb|3ECK|D Chain D, Structure Of E323l Homoprotocatechuate 2,3-Dioxygenase
From Brevibacterium Fuscum In Complex With Putative O-O
Bond Cleavage Intermediate Formed Via In Crystallo
Reaction With 4-Sulfonyl Catechol At Low Oxygen
Concentrations
Length = 365
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
Query: 139 VLQACAHLGALEFGEKIHRYISEHGYGSKMNLC-----NSLIAMYSKCGSLGMAFEVFKG 193
++Q C +GAL ++I R HG + L N I +Y++ + + G
Sbjct: 225 IIQICDKMGALRISDRIERGPGRHGVSNAFYLYILDPDNHRIEIYTQ--------DYYTG 276
Query: 194 MPEKDVVSWS 203
P+ ++W+
Sbjct: 277 DPDNPTITWN 286
>pdb|1Q0C|A Chain A, Anerobic Substrate Complex Of Homoprotocatechuate 2,3-
Dioxygenase From Brevibacterium Fuscum. (Complex With
3,4- Dihydroxyphenylacetate)
pdb|1Q0C|B Chain B, Anerobic Substrate Complex Of Homoprotocatechuate 2,3-
Dioxygenase From Brevibacterium Fuscum. (Complex With
3,4- Dihydroxyphenylacetate)
pdb|1Q0C|C Chain C, Anerobic Substrate Complex Of Homoprotocatechuate 2,3-
Dioxygenase From Brevibacterium Fuscum. (Complex With
3,4- Dihydroxyphenylacetate)
pdb|1Q0C|D Chain D, Anerobic Substrate Complex Of Homoprotocatechuate 2,3-
Dioxygenase From Brevibacterium Fuscum. (Complex With
3,4- Dihydroxyphenylacetate)
pdb|1Q0O|A Chain A, Crystal Structure Of Homoprotocatechuate 2,3-Dioxygenase
From Brevibacterium Fuscum (Full Length Protein)
pdb|1Q0O|B Chain B, Crystal Structure Of Homoprotocatechuate 2,3-Dioxygenase
From Brevibacterium Fuscum (Full Length Protein)
pdb|2IG9|A Chain A, Structure Of A Full-Length Homoprotocatechuate
2,3-Dioxygenase From B. Fuscum In A New Spacegroup.
pdb|2IG9|B Chain B, Structure Of A Full-Length Homoprotocatechuate
2,3-Dioxygenase From B. Fuscum In A New Spacegroup.
pdb|2IG9|C Chain C, Structure Of A Full-Length Homoprotocatechuate
2,3-Dioxygenase From B. Fuscum In A New Spacegroup.
pdb|2IG9|D Chain D, Structure Of A Full-Length Homoprotocatechuate
2,3-Dioxygenase From B. Fuscum In A New Spacegroup.
pdb|2IGA|A Chain A, Structure Of Homoprotocatechuate 2,3-Dioxygenase From B.
Fuscum In Complex With Reactive Intermediates Formed Via
In Crystallo Reaction With 4-Nitrocatechol At Low Oxygen
Concentrations.
pdb|2IGA|B Chain B, Structure Of Homoprotocatechuate 2,3-Dioxygenase From B.
Fuscum In Complex With Reactive Intermediates Formed Via
In Crystallo Reaction With 4-Nitrocatechol At Low Oxygen
Concentrations.
pdb|2IGA|C Chain C, Structure Of Homoprotocatechuate 2,3-Dioxygenase From B.
Fuscum In Complex With Reactive Intermediates Formed Via
In Crystallo Reaction With 4-Nitrocatechol At Low Oxygen
Concentrations.
pdb|2IGA|D Chain D, Structure Of Homoprotocatechuate 2,3-Dioxygenase From B.
Fuscum In Complex With Reactive Intermediates Formed Via
In Crystallo Reaction With 4-Nitrocatechol At Low Oxygen
Concentrations.
pdb|3BZA|A Chain A, Structure Of Mn-Substituted Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum At 1.7 Ang Resolution
pdb|3BZA|B Chain B, Structure Of Mn-Substituted Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum At 1.7 Ang Resolution
pdb|3BZA|C Chain C, Structure Of Mn-Substituted Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum At 1.7 Ang Resolution
pdb|3BZA|D Chain D, Structure Of Mn-Substituted Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum At 1.7 Ang Resolution
pdb|3OJJ|A Chain A, Structure Of Co-Substituted Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum At 1.72 Ang Resolution
pdb|3OJJ|B Chain B, Structure Of Co-Substituted Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum At 1.72 Ang Resolution
pdb|3OJJ|C Chain C, Structure Of Co-Substituted Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum At 1.72 Ang Resolution
pdb|3OJJ|D Chain D, Structure Of Co-Substituted Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum At 1.72 Ang Resolution
pdb|3OJK|A Chain A, Structure Of Co-Substituted Homoprotocatechuate
2,3-Dioxygenase In Complex With 4-Nitrocatechol At 1.68
Ang Resolution
pdb|3OJK|B Chain B, Structure Of Co-Substituted Homoprotocatechuate
2,3-Dioxygenase In Complex With 4-Nitrocatechol At 1.68
Ang Resolution
pdb|3OJK|C Chain C, Structure Of Co-Substituted Homoprotocatechuate
2,3-Dioxygenase In Complex With 4-Nitrocatechol At 1.68
Ang Resolution
pdb|3OJK|D Chain D, Structure Of Co-Substituted Homoprotocatechuate
2,3-Dioxygenase In Complex With 4-Nitrocatechol At 1.68
Ang Resolution
pdb|3OJN|A Chain A, Structure Of Mn-Substituted Homoprotocatechuate
2,3-Dioxygenase At 1.65 Ang Resolution
pdb|3OJN|B Chain B, Structure Of Mn-Substituted Homoprotocatechuate
2,3-Dioxygenase At 1.65 Ang Resolution
pdb|3OJN|C Chain C, Structure Of Mn-Substituted Homoprotocatechuate
2,3-Dioxygenase At 1.65 Ang Resolution
pdb|3OJN|D Chain D, Structure Of Mn-Substituted Homoprotocatechuate
2,3-Dioxygenase At 1.65 Ang Resolution
pdb|3OJT|A Chain A, Structure Of Native Fe-Containing Homoprotocatechuate
2,3-Dioxygenase At 1.70 Ang Resolution
pdb|3OJT|B Chain B, Structure Of Native Fe-Containing Homoprotocatechuate
2,3-Dioxygenase At 1.70 Ang Resolution
pdb|3OJT|C Chain C, Structure Of Native Fe-Containing Homoprotocatechuate
2,3-Dioxygenase At 1.70 Ang Resolution
pdb|3OJT|D Chain D, Structure Of Native Fe-Containing Homoprotocatechuate
2,3-Dioxygenase At 1.70 Ang Resolution
pdb|4GHG|A Chain A, Structure Of Homoprotocatechuate 2,3-Dioxygenase From
B.Fuscum In Complex With Hpca At 1.50 Ang Resolution
pdb|4GHG|B Chain B, Structure Of Homoprotocatechuate 2,3-Dioxygenase From
B.Fuscum In Complex With Hpca At 1.50 Ang Resolution
pdb|4GHG|C Chain C, Structure Of Homoprotocatechuate 2,3-Dioxygenase From
B.Fuscum In Complex With Hpca At 1.50 Ang Resolution
pdb|4GHG|D Chain D, Structure Of Homoprotocatechuate 2,3-Dioxygenase From
B.Fuscum In Complex With Hpca At 1.50 Ang Resolution
pdb|4GHH|A Chain A, Structure Of Homoprotocatechuate 2,3-Dioxygenase From
B.Fuscum In Complex With 4-Nitrocatechol At 1.55 Ang
Resolution
pdb|4GHH|B Chain B, Structure Of Homoprotocatechuate 2,3-Dioxygenase From
B.Fuscum In Complex With 4-Nitrocatechol At 1.55 Ang
Resolution
pdb|4GHH|C Chain C, Structure Of Homoprotocatechuate 2,3-Dioxygenase From
B.Fuscum In Complex With 4-Nitrocatechol At 1.55 Ang
Resolution
pdb|4GHH|D Chain D, Structure Of Homoprotocatechuate 2,3-Dioxygenase From
B.Fuscum In Complex With 4-Nitrocatechol At 1.55 Ang
Resolution
Length = 365
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
Query: 139 VLQACAHLGALEFGEKIHRYISEHGYGSKMNLC-----NSLIAMYSKCGSLGMAFEVFKG 193
++Q C +GAL ++I R HG + L N I +Y++ + + G
Sbjct: 225 IIQICDKMGALRISDRIERGPGRHGVSNAFYLYILDPDNHRIEIYTQ--------DYYTG 276
Query: 194 MPEKDVVSWS 203
P+ ++W+
Sbjct: 277 DPDNPTITWN 286
>pdb|4GHC|A Chain A, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum At 1.55 Ang Resolution
pdb|4GHC|B Chain B, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum At 1.55 Ang Resolution
pdb|4GHC|C Chain C, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum At 1.55 Ang Resolution
pdb|4GHC|D Chain D, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum At 1.55 Ang Resolution
pdb|4GHD|A Chain A, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum In Complex With Hpca At
1.85 Ang Resolution
pdb|4GHD|B Chain B, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum In Complex With Hpca At
1.85 Ang Resolution
pdb|4GHD|C Chain C, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum In Complex With Hpca At
1.85 Ang Resolution
pdb|4GHD|D Chain D, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum In Complex With Hpca At
1.85 Ang Resolution
pdb|4GHE|A Chain A, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum In Complex With
4-Nitrocatechol At 1.60 Ang Resolution
pdb|4GHE|B Chain B, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum In Complex With
4-Nitrocatechol At 1.60 Ang Resolution
pdb|4GHE|C Chain C, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum In Complex With
4-Nitrocatechol At 1.60 Ang Resolution
pdb|4GHE|D Chain D, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum In Complex With
4-Nitrocatechol At 1.60 Ang Resolution
pdb|4GHF|A Chain A, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum In Complex With
4-Nitrocatechol And Dioxygen At 1.67 Ang Resolution
pdb|4GHF|B Chain B, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum In Complex With
4-Nitrocatechol And Dioxygen At 1.67 Ang Resolution
pdb|4GHF|C Chain C, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum In Complex With
4-Nitrocatechol And Dioxygen At 1.67 Ang Resolution
pdb|4GHF|D Chain D, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum In Complex With
4-Nitrocatechol And Dioxygen At 1.67 Ang Resolution
Length = 365
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
Query: 139 VLQACAHLGALEFGEKIHRYISEHGYGSKMNLC-----NSLIAMYSKCGSLGMAFEVFKG 193
++Q C +GAL ++I R HG + L N I +Y++ + + G
Sbjct: 225 IIQICDKMGALRISDRIERGPGRHGVSNAFYLFILDPDNHRIEIYTQ--------DYYTG 276
Query: 194 MPEKDVVSWS 203
P+ ++W+
Sbjct: 277 DPDNPTITWN 286
>pdb|1F1X|A Chain A, Crystal Structure Of Homoprotocatechuate 2,3-Dioxygenase
From Brevibacterium Fuscum
pdb|1F1X|B Chain B, Crystal Structure Of Homoprotocatechuate 2,3-Dioxygenase
From Brevibacterium Fuscum
pdb|1F1X|C Chain C, Crystal Structure Of Homoprotocatechuate 2,3-Dioxygenase
From Brevibacterium Fuscum
pdb|1F1X|D Chain D, Crystal Structure Of Homoprotocatechuate 2,3-Dioxygenase
From Brevibacterium Fuscum
Length = 322
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
Query: 139 VLQACAHLGALEFGEKIHRYISEHGYGSKMNLC-----NSLIAMYSKCGSLGMAFEVFKG 193
++Q C +GAL ++I R HG + L N I +Y++ + + G
Sbjct: 225 IIQICDKMGALRISDRIERGPGRHGVSNAFYLYILDPDNHRIEIYTQ--------DYYTG 276
Query: 194 MPEKDVVSWS 203
P+ ++W+
Sbjct: 277 DPDNPTITWN 286
>pdb|1YPF|A Chain A, Crystal Structure Of Guac (Ba5705) From Bacillus Anthracis
At 1.8 A Resolution
pdb|1YPF|B Chain B, Crystal Structure Of Guac (Ba5705) From Bacillus Anthracis
At 1.8 A Resolution
pdb|2A1Y|A Chain A, Crystal Structure Of Guac-Gmp Complex From Bacillus
Anthracis At 2.26 A Resolution
Length = 336
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 384 EFVVDDVSHPRINEIYQMLDEINKQLK----IAGYVA--EITSELHNLGAE 428
E++ D++H N + M+ I K L IAG V E EL N GA+
Sbjct: 122 EYITIDIAHGHSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAGAD 172
>pdb|1YQY|A Chain A, Structure Of B. Anthrax Lethal Factor In Complex With A
Hydroxamate Inhibitor
Length = 523
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 385 FVVDDVSHPRINEIYQMLDEINKQLKIAG-YVAEITSELHNLGAEEKGNALSYHSEKLAI 443
FV D++ P I E Y DEI +Q+ G YV E S L L KG L SE
Sbjct: 372 FVFTDITLPNIAEQYTHQDEIYEQVHSKGLYVPESRSIL--LHGPSKGVELRNDSEGFIH 429
Query: 444 AFG 446
FG
Sbjct: 430 EFG 432
>pdb|4DV8|A Chain A, Anthrax Lethal Factor Metalloproteinase In Complex With
The Hydroxamic Acid Based Small Molecule Pt8421
Length = 526
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 385 FVVDDVSHPRINEIYQMLDEINKQLKIAG-YVAEITSELHNLGAEEKGNALSYHSEKLAI 443
FV D++ P I E Y DEI +Q+ G YV E S L L KG L SE
Sbjct: 379 FVFTDITLPNIAEQYTHQDEIYEQVHSKGLYVPESRSIL--LHGPSKGVELRNDSEGFIH 436
Query: 444 AFG 446
FG
Sbjct: 437 EFG 439
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,632,025
Number of Sequences: 62578
Number of extensions: 657398
Number of successful extensions: 2102
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2100
Number of HSP's gapped (non-prelim): 16
length of query: 505
length of database: 14,973,337
effective HSP length: 103
effective length of query: 402
effective length of database: 8,527,803
effective search space: 3428176806
effective search space used: 3428176806
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (25.4 bits)