BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010642
(505 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530
OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
Length = 591
Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/509 (67%), Positives = 414/509 (81%), Gaps = 4/509 (0%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKR-IPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRD 59
M+RA+S+S +P EGF LF +R+ +P NP + SFA+KCC+K L+GGLQIH ++ D
Sbjct: 83 MIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLGGLQIHGKIFSD 142
Query: 60 GYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLF 119
G+ DS LMTTLMDLYST E S +ACK+FDEIP+RDTV+WNVL SCY+RN+RTRD L LF
Sbjct: 143 GFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNKRTRDVLVLF 202
Query: 120 DNLNREESGC-KPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMY 178
D + + GC KPD VTCLL LQACA+LGAL+FG+++H +I E+G +NL N+L++MY
Sbjct: 203 DKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVSMY 262
Query: 179 SKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFT 238
S+CGS+ A++VF GM E++VVSW+A+ISGLAMNG G++AIE+F M + G+ P++QT T
Sbjct: 263 SRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLT 322
Query: 239 GVLSACSHCGLVDEGMMFLDRM-SKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMG 297
G+LSACSH GLV EGMMF DRM S +F I PN+HHYGCVVDLLGRA LLD+AY LI SM
Sbjct: 323 GLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKAYSLIKSME 382
Query: 298 VKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKE 357
+KPDSTIWRTLLGACR+H V LGERVI HLIELKA+E+GDYVLLLN YS+VG WEKV E
Sbjct: 383 MKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLLNTYSTVGKWEKVTE 442
Query: 358 LREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAE 417
LR M EK + T PGCS I L+G VHEF+VDDVSHPR EIY+ML EIN+QLKIAGYVAE
Sbjct: 443 LRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIAGYVAE 502
Query: 418 ITSELHNLGA-EEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLS 476
ITSELHNL + EEKG AL YHSEKLAIAFG+L TPPGTTIRV KNLR CVDCHNFAK +S
Sbjct: 503 ITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVTKNLRTCVDCHNFAKFVS 562
Query: 477 GVYNREVIIRDRLRFHHFREGRCSCNDYW 505
VY+R VI+RDR RFHHF+ G CSCND+W
Sbjct: 563 DVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 434 bits (1115), Expect = e-121, Method: Compositional matrix adjust.
Identities = 214/507 (42%), Positives = 319/507 (62%), Gaps = 4/507 (0%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M+ Y+ + + +E LF+ M + + + + C + S+ G Q+H + G
Sbjct: 237 MISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHG 296
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
+ + +++ L+DLYS + AC LF+ +P +D ++WN LI Y ++AL LF
Sbjct: 297 FGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQ 356
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEH--GYGSKMNLCNSLIAMY 178
+ R SG P+DVT L +L ACAHLGA++ G IH YI + G + +L SLI MY
Sbjct: 357 EMLR--SGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMY 414
Query: 179 SKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFT 238
+KCG + A +VF + K + SW+AMI G AM+G + + F M++ G+ PDD TF
Sbjct: 415 AKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFV 474
Query: 239 GVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGV 298
G+LSACSH G++D G M++D+ + P + HYGC++DLLG +GL +A ++I M +
Sbjct: 475 GLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEM 534
Query: 299 KPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKEL 358
+PD IW +LL AC++H +V LGE E+LI+++ + G YVLL N+Y+S G W +V +
Sbjct: 535 EPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKT 594
Query: 359 REFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEI 418
R +N+KG++ PGCS+I + VVHEF++ D HPR EIY ML+E+ L+ AG+V +
Sbjct: 595 RALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDT 654
Query: 419 TSELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGV 478
+ L + E K AL +HSEKLAIAFG+++T PGT + + KNLR+C +CH K++S +
Sbjct: 655 SEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKI 714
Query: 479 YNREVIIRDRLRFHHFREGRCSCNDYW 505
Y RE+I RDR RFHHFR+G CSCNDYW
Sbjct: 715 YKREIIARDRTRFHHFRDGVCSCNDYW 741
Score = 170 bits (430), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 103/349 (29%), Positives = 175/349 (50%), Gaps = 39/349 (11%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M R +++SS P L+ M + N + F +K C K + G QIH VL+ G
Sbjct: 105 MFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLG 164
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQR-------------------------- 94
LD + T+L+ +Y + +A K+FD+ P R
Sbjct: 165 CDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFD 224
Query: 95 -----DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGAL 149
D V+WN +IS Y ++AL LF ++ + + +PD+ T + V+ ACA G++
Sbjct: 225 EIPVKDVVSWNAMISGYAETGNYKEALELFKDMMK--TNVRPDESTMVTVVSACAQSGSI 282
Query: 150 EFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGL 209
E G ++H +I +HG+GS + + N+LI +YSKCG L A +F+ +P KDV+SW+ +I G
Sbjct: 283 ELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGY 342
Query: 210 AMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGM---MFLDRMSKDFGI 266
++A+ F M R+G P+D T +L AC+H G +D G +++D+ K G+
Sbjct: 343 THMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLK--GV 400
Query: 267 LPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIH 315
++D+ + G ++ A+Q+ S+ K S+ W ++ +H
Sbjct: 401 TNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS-WNAMIFGFAMH 448
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 101/377 (26%), Positives = 173/377 (45%), Gaps = 60/377 (15%)
Query: 44 CSLMGGLQI-HARVLRDGYQLDSQLMTTLMD---LYSTFEKSFEACKLFDEIPQRDTVAW 99
C + L+I HA++++ G + ++ L++ L FE A +F I + + + W
Sbjct: 43 CKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIW 102
Query: 100 NVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYI 159
N + + + AL L+ + G P+ T VL++CA A + G++IH ++
Sbjct: 103 NTMFRGHALSSDPVSALKLY--VCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHV 160
Query: 160 SEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVF---------------KG----------- 193
+ G + + SLI+MY + G L A +VF KG
Sbjct: 161 LKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQ 220
Query: 194 -----MPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCG 248
+P KDVVSW+AMISG A G+ ++A+E F M + V PD+ T V+SAC+ G
Sbjct: 221 KLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSG 280
Query: 249 LVDEGM---MFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIW 305
++ G +++D D G N+ ++DL + G L+ A L + K D W
Sbjct: 281 SIELGRQVHLWID----DHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYK-DVISW 335
Query: 306 RTLLGACRIHKHVTLGERVIEHLIE-LKAQESGDYVLLLNLYSS--------VGDWEKV- 355
TL+G + H+ L + + E L++ E+ + V +L++ + +G W V
Sbjct: 336 NTLIGG---YTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVY 392
Query: 356 --KELREFMNEKGLQTT 370
K L+ N L+T+
Sbjct: 393 IDKRLKGVTNASSLRTS 409
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust.
Identities = 219/535 (40%), Positives = 315/535 (58%), Gaps = 30/535 (5%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M+R +S S PE L+++M P N + +K C + QIHA++ + G
Sbjct: 86 MIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLG 145
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
Y+ D + +L++ Y+ A LFD IP+ D V+WN +I Y++ + AL LF
Sbjct: 146 YENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFR 205
Query: 121 --------------------NLNRE---------ESGCKPDDVTCLLVLQACAHLGALEF 151
++N+E S +PD+V+ L ACA LGALE
Sbjct: 206 KMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQ 265
Query: 152 GEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAM 211
G+ IH Y+++ L LI MY+KCG + A EVFK + +K V +W+A+ISG A
Sbjct: 266 GKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAY 325
Query: 212 NGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIH 271
+GHGR+AI F MQ+ G+ P+ TFT VL+ACS+ GLV+EG + M +D+ + P I
Sbjct: 326 HGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIE 385
Query: 272 HYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIEL 331
HYGC+VDLLGRAGLLD+A + I M +KP++ IW LL ACRIHK++ LGE + E LI +
Sbjct: 386 HYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAI 445
Query: 332 KAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVS 391
G YV N+++ W+K E R M E+G+ PGCSTI L+G HEF+ D S
Sbjct: 446 DPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRS 505
Query: 392 HPRINEIYQMLDEINKQLKIAGYVAEITSELHNLGAEEKGNALSY-HSEKLAIAFGVLAT 450
HP I +I + ++L+ GYV E+ L +L +++ A+ + HSEKLAI +G++ T
Sbjct: 506 HPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKT 565
Query: 451 PPGTTIRVAKNLRICVDCHNFAKVLSGVYNREVIIRDRLRFHHFREGRCSCNDYW 505
PGT IR+ KNLR+C DCH K++S +Y R++++RDR RFHHFR+G+CSC DYW
Sbjct: 566 KPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620
Score = 112 bits (281), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 89/347 (25%), Positives = 157/347 (45%), Gaps = 51/347 (14%)
Query: 29 NPFACSFAIK-------CCMKFCSLMGGL-QIHARVLRDGYQLDSQLMTTLMDL-YSTFE 79
N +CSF+++ C++ CS L QIHAR+L+ G DS +T + S+
Sbjct: 2 NVISCSFSLEHNLYETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTS 61
Query: 80 KSF--EACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCL 137
F A +FD + DT WN++I + + +L L+ + S + T
Sbjct: 62 SDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLC--SSAPHNAYTFP 119
Query: 138 LVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYS------------------ 179
+L+AC++L A E +IH I++ GY + + NSLI Y+
Sbjct: 120 SLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEP 179
Query: 180 -------------KCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQ 226
K G + +A +F+ M EK+ +SW+ MISG ++A++ F MQ
Sbjct: 180 DDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQ 239
Query: 227 RAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCV-VDLLGRAGL 285
+ V PD+ + LSAC+ G +++G ++K + ++ GCV +D+ + G
Sbjct: 240 NSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSV--LGCVLIDMYAKCGE 297
Query: 286 LDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELK 332
+++A ++ ++ K W L+ H H G I +E++
Sbjct: 298 MEEALEVFKNIK-KKSVQAWTALISGYAYHGH---GREAISKFMEMQ 340
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/536 (40%), Positives = 314/536 (58%), Gaps = 37/536 (6%)
Query: 2 VRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGY 61
+ S++ ++ F L+ ++ I N F S +K CS G IH VL+ G
Sbjct: 102 INTASINGLKDQAFLLYVQLLSSEINPNEFTFS----SLLKSCSTKSGKLIHTHVLKFGL 157
Query: 62 QLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQR--------------------------- 94
+D + T L+D+Y+ A K+FD +P+R
Sbjct: 158 GIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDS 217
Query: 95 ----DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALE 150
D V+WNV+I Y ++ DAL LF L E KPD++T + L AC+ +GALE
Sbjct: 218 MCERDIVSWNVMIDGYAQHGFPNDALMLFQKL-LAEGKPKPDEITVVAALSACSQIGALE 276
Query: 151 FGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLA 210
G IH ++ + +C LI MYSKCGSL A VF P KD+V+W+AMI+G A
Sbjct: 277 TGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYA 336
Query: 211 MNGHGRDAIESFGAMQR-AGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN 269
M+G+ +DA+ F MQ G+ P D TF G L AC+H GLV+EG+ + M +++GI P
Sbjct: 337 MHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPK 396
Query: 270 IHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLI 329
I HYGC+V LLGRAG L +AY+ I +M + DS +W ++LG+C++H LG+ + E+LI
Sbjct: 397 IEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLI 456
Query: 330 ELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDD 389
L + SG YVLL N+Y+SVGD+E V ++R M EKG+ PG STI ++ VHEF D
Sbjct: 457 GLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGD 516
Query: 390 VSHPRINEIYQMLDEINKQLKIAGYVAEITSELHNLGAEEKGNALSYHSEKLAIAFGVLA 449
H + EIY ML +I++++K GYV + L +L EK +L HSE+LAIA+G+++
Sbjct: 517 REHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLIS 576
Query: 450 TPPGTTIRVAKNLRICVDCHNFAKVLSGVYNREVIIRDRLRFHHFREGRCSCNDYW 505
T PG+ +++ KNLR+C DCH K++S + R++++RDR RFHHF +G CSC D+W
Sbjct: 577 TKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 426 bits (1094), Expect = e-118, Method: Compositional matrix adjust.
Identities = 213/537 (39%), Positives = 318/537 (59%), Gaps = 33/537 (6%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M+ + SP++ LF+KM + + + + C K +L G Q+ + + +
Sbjct: 203 MINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENR 262
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFD------------------------------- 89
++ L ++D+Y+ +A +LFD
Sbjct: 263 VNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLN 322
Query: 90 EIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGAL 149
+PQ+D VAWN LIS Y +N + +AL +F L +++ K + +T + L ACA +GAL
Sbjct: 323 SMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKN-MKLNQITLVSTLSACAQVGAL 381
Query: 150 EFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGL 209
E G IH YI +HG ++ ++LI MYSKCG L + EVF + ++DV WSAMI GL
Sbjct: 382 ELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGL 441
Query: 210 AMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN 269
AM+G G +A++ F MQ A V P+ TFT V ACSH GLVDE +M ++GI+P
Sbjct: 442 AMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPE 501
Query: 270 IHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLI 329
HY C+VD+LGR+G L++A + I +M + P +++W LLGAC+IH ++ L E L+
Sbjct: 502 EKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLL 561
Query: 330 ELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDD 389
EL+ + G +VLL N+Y+ +G WE V ELR+ M GL+ PGCS+I + G++HEF+ D
Sbjct: 562 ELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGD 621
Query: 390 VSHPRINEIYQMLDEINKQLKIAGYVAEITSELHNLGAEE-KGNALSYHSEKLAIAFGVL 448
+HP ++Y L E+ ++LK GY EI+ L + EE K +L+ HSEKLAI +G++
Sbjct: 622 NAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLI 681
Query: 449 ATPPGTTIRVAKNLRICVDCHNFAKVLSGVYNREVIIRDRLRFHHFREGRCSCNDYW 505
+T IRV KNLR+C DCH+ AK++S +Y+RE+I+RDR RFHHFR G+CSCND+W
Sbjct: 682 STEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/348 (26%), Positives = 158/348 (45%), Gaps = 37/348 (10%)
Query: 1 MVRAYSMSSSPEEGFYLFEKM-RQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRD 59
++RAY+ P + F M + + N + F IK + SL G +H ++
Sbjct: 101 LIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKS 160
Query: 60 GYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLF 119
D + +L+ Y + ACK+F I ++D V+WN +I+ +++ AL LF
Sbjct: 161 AVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELF 220
Query: 120 DNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYS 179
+ E+ K VT + VL ACA + LEFG ++ YI E+ + L N+++ MY+
Sbjct: 221 KKMESED--VKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYT 278
Query: 180 KCGSL-------------------------------GMAFEVFKGMPEKDVVSWSAMISG 208
KCGS+ A EV MP+KD+V+W+A+IS
Sbjct: 279 KCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISA 338
Query: 209 LAMNGHGRDAIESFGAMQRAGVFPDDQ-TFTGVLSACSHCGLVDEGMMFLDRMSKDFGIL 267
NG +A+ F +Q +Q T LSAC+ G ++ G ++ K GI
Sbjct: 339 YEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELG-RWIHSYIKKHGIR 397
Query: 268 PNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIH 315
N H ++ + + G L+++ ++ S+ K D +W ++G +H
Sbjct: 398 MNFHVTSALIHMYSKCGDLEKSREVFNSVE-KRDVFVWSAMIGGLAMH 444
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 141/304 (46%), Gaps = 5/304 (1%)
Query: 27 PTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTL--MDLYSTFEKSFEA 84
PT S I + SL Q H ++R G D + L M S+F A
Sbjct: 24 PTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYA 83
Query: 85 CKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACA 144
K+FDEIP+ ++ AWN LI Y ++ F ++ ES C P+ T +++A A
Sbjct: 84 RKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDM-VSESQCYPNKYTFPFLIKAAA 142
Query: 145 HLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSA 204
+ +L G+ +H + GS + + NSLI Y CG L A +VF + EKDVVSW++
Sbjct: 143 EVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNS 202
Query: 205 MISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDF 264
MI+G G A+E F M+ V T GVLSAC+ ++ G + ++
Sbjct: 203 MINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEEN- 261
Query: 265 GILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERV 324
+ N+ ++D+ + G ++ A +L +M K D+ W T+L I + V
Sbjct: 262 RVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEK-DNVTWTTMLDGYAISEDYEAAREV 320
Query: 325 IEHL 328
+ +
Sbjct: 321 LNSM 324
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 426 bits (1094), Expect = e-118, Method: Compositional matrix adjust.
Identities = 223/534 (41%), Positives = 318/534 (59%), Gaps = 47/534 (8%)
Query: 17 LFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLY- 75
+E M + + N F +K C K + G QIH L+ G+ D +M+ L+ +Y
Sbjct: 115 FYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYV 174
Query: 76 --------------STFEKSFEA--------------------------CK----LFDEI 91
+ EK CK LFD++
Sbjct: 175 MCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKM 234
Query: 92 PQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEF 151
QR V+WN +IS Y N +DA+ +F + + + +P+ VT + VL A + LG+LE
Sbjct: 235 RQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGD--IRPNYVTLVSVLPAISRLGSLEL 292
Query: 152 GEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAM 211
GE +H Y + G L ++LI MYSKCG + A VF+ +P ++V++WSAMI+G A+
Sbjct: 293 GEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAI 352
Query: 212 NGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIH 271
+G DAI+ F M++AGV P D + +L+ACSH GLV+EG + +M G+ P I
Sbjct: 353 HGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIE 412
Query: 272 HYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIEL 331
HYGC+VDLLGR+GLLD+A + I +M +KPD IW+ LLGACR+ +V +G+RV L+++
Sbjct: 413 HYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDM 472
Query: 332 KAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVS 391
+SG YV L N+Y+S G+W +V E+R M EK ++ PGCS I + GV+HEFVV+D S
Sbjct: 473 VPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDS 532
Query: 392 HPRINEIYQMLDEINKQLKIAGYVAEITSELHNLGAEEKGNALSYHSEKLAIAFGVLATP 451
HP+ EI ML EI+ +L++AGY T L NL E+K N L YHSEK+A AFG+++T
Sbjct: 533 HPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTS 592
Query: 452 PGTTIRVAKNLRICVDCHNFAKVLSGVYNREVIIRDRLRFHHFREGRCSCNDYW 505
PG IR+ KNLRIC DCH+ K++S VY R++ +RDR RFHHF++G CSC DYW
Sbjct: 593 PGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/316 (24%), Positives = 143/316 (45%), Gaps = 54/316 (17%)
Query: 51 QIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFE----ACKLFDEIPQRDTVAWNVLISCY 106
QIHA ++ G D+ ++ +T + A K+F+++PQR+ +WN +I +
Sbjct: 41 QIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGF 100
Query: 107 IRNQRTRD--ALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGY 164
+ + A+ LF + +E +P+ T VL+ACA G ++ G++IH ++G+
Sbjct: 101 SESDEDKALIAITLFYEMMSDEF-VEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGF 159
Query: 165 GSKMNLCNSLIAMYSKCGSLGMAFEVF-KGMPEKD------------------------- 198
G + ++L+ MY CG + A +F K + EKD
Sbjct: 160 GGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYM 219
Query: 199 -------------------VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTG 239
VVSW+ MISG ++NG +DA+E F M++ + P+ T
Sbjct: 220 RLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVS 279
Query: 240 VLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVK 299
VL A S G ++ G +L ++D GI + ++D+ + G++++A + + +
Sbjct: 280 VLPAISRLGSLELG-EWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLP-R 337
Query: 300 PDSTIWRTLLGACRIH 315
+ W ++ IH
Sbjct: 338 ENVITWSAMINGFAIH 353
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 103/216 (47%), Gaps = 4/216 (1%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M+ YS++ ++ +F +M++ I N + + SL G +H G
Sbjct: 245 MISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSG 304
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
++D L + L+D+YS +A +F+ +P+ + + W+ +I+ + + + DA+ F
Sbjct: 305 IRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFC 364
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEK-IHRYISEHGYGSKMNLCNSLIAMYS 179
+ ++G +P DV + +L AC+H G +E G + + +S G ++ ++ +
Sbjct: 365 KM--RQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLG 422
Query: 180 KCGSLGMAFEVFKGMPEK-DVVSWSAMISGLAMNGH 214
+ G L A E MP K D V W A++ M G+
Sbjct: 423 RSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGN 458
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 420 bits (1079), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/507 (40%), Positives = 316/507 (62%), Gaps = 4/507 (0%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMR-QKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRD 59
++R Y+ + F L+ +MR + + F IK + G IH+ V+R
Sbjct: 91 LIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRS 150
Query: 60 GYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLF 119
G+ + +L+ LY+ A K+FD++P++D VAWN +I+ + N + +AL L+
Sbjct: 151 GFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALY 210
Query: 120 DNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYS 179
+N + G KPD T + +L ACA +GAL G+++H Y+ + G ++ N L+ +Y+
Sbjct: 211 TEMNSK--GIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYA 268
Query: 180 KCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRA-GVFPDDQTFT 238
+CG + A +F M +K+ VSW+++I GLA+NG G++AIE F M+ G+ P + TF
Sbjct: 269 RCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFV 328
Query: 239 GVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGV 298
G+L ACSHCG+V EG + RM +++ I P I H+GC+VDLL RAG + +AY+ I SM +
Sbjct: 329 GILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPM 388
Query: 299 KPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKEL 358
+P+ IWRTLLGAC +H L E +++L+ SGDYVLL N+Y+S W V+++
Sbjct: 389 QPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKI 448
Query: 359 REFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEI 418
R+ M G++ PG S + + VHEF++ D SHP+ + IY L E+ +L+ GYV +I
Sbjct: 449 RKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQI 508
Query: 419 TSELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGV 478
++ ++ EEK NA+ YHSEK+AIAF +++TP + I V KNLR+C DCH K++S V
Sbjct: 509 SNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKV 568
Query: 479 YNREVIIRDRLRFHHFREGRCSCNDYW 505
YNRE+++RDR RFHHF+ G CSC DYW
Sbjct: 569 YNREIVVRDRSRFHHFKNGSCSCQDYW 595
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 415 bits (1066), Expect = e-115, Method: Compositional matrix adjust.
Identities = 198/505 (39%), Positives = 310/505 (61%), Gaps = 2/505 (0%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
++ Y+ S E+ + +M + + F S + ++ ++ G +IH V+R G
Sbjct: 213 IIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKG 272
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
D + ++L+D+Y+ + ++ ++F + RD ++WN L++ Y++N R +AL LF
Sbjct: 273 IDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFR 332
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180
+ + KP V V+ ACAHL L G+++H Y+ G+GS + + ++L+ MYSK
Sbjct: 333 QM--VTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSK 390
Query: 181 CGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240
CG++ A ++F M D VSW+A+I G A++GHG +A+ F M+R GV P+ F V
Sbjct: 391 CGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAV 450
Query: 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKP 300
L+ACSH GLVDE + + M+K +G+ + HY V DLLGRAG L++AY I+ M V+P
Sbjct: 451 LTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEP 510
Query: 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELRE 360
++W TLL +C +HK++ L E+V E + + ++ G YVL+ N+Y+S G W+++ +LR
Sbjct: 511 TGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRL 570
Query: 361 FMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITS 420
M +KGL+ P CS I +K H FV D SHP +++I + L + +Q++ GYVA+ +
Sbjct: 571 RMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSG 630
Query: 421 ELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYN 480
LH++ E K L HSE+LA+AFG++ T PGTTIRV KN+RIC DCH K +S +
Sbjct: 631 VLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITE 690
Query: 481 REVIIRDRLRFHHFREGRCSCNDYW 505
RE+I+RD RFHHF G CSC DYW
Sbjct: 691 REIIVRDNSRFHHFNRGNCSCGDYW 715
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 123/297 (41%), Gaps = 41/297 (13%)
Query: 51 QIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQ 110
Q+HA+ +R L + ++ +Y+ + EA LF + +AW +I C+
Sbjct: 26 QLHAQFIRT-QSLSHTSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQS 84
Query: 111 RTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNL 170
AL F + SG PD VL++C + L FGE +H +I G +
Sbjct: 85 LFSKALASF--VEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYT 142
Query: 171 CNSLIAMYSKCGSLG------------------------------MAF------EVFKGM 194
N+L+ MY+K +G M F VF+ M
Sbjct: 143 GNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVM 202
Query: 195 PEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGM 254
P KDVVS++ +I+G A +G DA+ M + PD T + VL S V +G
Sbjct: 203 PRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGK 262
Query: 255 MFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGA 311
+ + GI +++ +VD+ ++ ++ + ++ + + + D W +L+
Sbjct: 263 EIHGYVIRK-GIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCR-DGISWNSLVAG 317
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 415 bits (1066), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/537 (38%), Positives = 319/537 (59%), Gaps = 34/537 (6%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
++R +S + P + F + +M + RI + F IK + ++ G Q H++++R G
Sbjct: 88 LIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFG 147
Query: 61 YQLDSQLMTTLMDLY------------------------STFEKSFEAC-------KLFD 89
+Q D + +L+ +Y ++ + C ++FD
Sbjct: 148 FQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFD 207
Query: 90 EIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGAL 149
E+P R+ W+++I+ Y +N A+ LF+ + RE G ++ + V+ +CAHLGAL
Sbjct: 208 EMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKRE--GVVANETVMVSVISSCAHLGAL 265
Query: 150 EFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGL 209
EFGE+ + Y+ + + L +L+ M+ +CG + A VF+G+PE D +SWS++I GL
Sbjct: 266 EFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGL 325
Query: 210 AMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN 269
A++GH A+ F M G P D TFT VLSACSH GLV++G+ + M KD GI P
Sbjct: 326 AVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPR 385
Query: 270 IHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLI 329
+ HYGC+VD+LGRAG L +A I M VKP++ I LLGAC+I+K+ + ERV LI
Sbjct: 386 LEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLI 445
Query: 330 ELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVV-D 388
++K + SG YVLL N+Y+ G W+K++ LR+ M EK ++ PG S I + G +++F + D
Sbjct: 446 KVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGD 505
Query: 389 DVSHPRINEIYQMLDEINKQLKIAGYVAEITSELHNLGAEEKGNALSYHSEKLAIAFGVL 448
D HP + +I + +EI ++++ GY ++ EEK +++ HSEKLAIA+G++
Sbjct: 506 DQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMM 565
Query: 449 ATPPGTTIRVAKNLRICVDCHNFAKVLSGVYNREVIIRDRLRFHHFREGRCSCNDYW 505
T PGTTIR+ KNLR+C DCH K++S VY RE+I+RDR RFHHFR G CSC DYW
Sbjct: 566 KTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 147/330 (44%), Gaps = 43/330 (13%)
Query: 41 MKFCSLMGGLQI-HARVLRDGYQLDSQLMTTLMDL---YSTFEKSFE----ACKLFDEIP 92
++ CS L+I H +LR D + + L+ L STF K A +F +I
Sbjct: 19 LQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQ 78
Query: 93 QRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFG 152
+ +N+LI C+ A + + + S PD++T +++A + + + G
Sbjct: 79 NPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLK--SRIWPDNITFPFLIKASSEMECVLVG 136
Query: 153 EKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISG---- 208
E+ H I G+ + + + NSL+ MY+ CG + A +F M +DVVSW++M++G
Sbjct: 137 EQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKC 196
Query: 209 ----------------------LAMNGHGRD-----AIESFGAMQRAGVFPDDQTFTGVL 241
+ +NG+ ++ AI+ F M+R GV ++ V+
Sbjct: 197 GMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVI 256
Query: 242 SACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPD 301
S+C+H G ++ G + + K + N+ +VD+ R G +++A + + + D
Sbjct: 257 SSCAHLGALEFGERAYEYVVKSH-MTVNLILGTALVDMFWRCGDIEKAIHVFEGLP-ETD 314
Query: 302 STIWRTLLGACRIHKHVTLGERVIEHLIEL 331
S W +++ +H H +I L
Sbjct: 315 SLSWSSIIKGLAVHGHAHKAMHYFSQMISL 344
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 108/239 (45%), Gaps = 17/239 (7%)
Query: 137 LLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAM------YSKCGSL-GMAFE 189
L +LQ+C+ L+ IH ++ S + + + L+A+ ++K +L G A+
Sbjct: 16 LALLQSCSSFSDLKI---IHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYG 72
Query: 190 VFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGL 249
+F + ++ ++ +I + A + M ++ ++PD+ TF ++ A S
Sbjct: 73 IFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMEC 132
Query: 250 VDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLL 309
V G ++ + FG +++ +V + G + A ++ MG + D W +++
Sbjct: 133 VLVGEQTHSQIVR-FGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFR-DVVSWTSMV 190
Query: 310 -GACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGL 367
G C+ + E E E+ + + +++N Y+ +EK +L EFM +G+
Sbjct: 191 AGYCK----CGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGV 245
>sp|Q9LXY5|PP284_ARATH Pentatricopeptide repeat-containing protein At3g56550
OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1
Length = 581
Score = 412 bits (1058), Expect = e-114, Method: Compositional matrix adjust.
Identities = 212/507 (41%), Positives = 312/507 (61%), Gaps = 4/507 (0%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIP-TNPFACSFAIKCCMKFCSLMGGLQIHARVLRD 59
++R +S SSSP + +M + + F +FA+K C + S+ L+IH V+R
Sbjct: 77 LIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCLEIHGSVIRS 136
Query: 60 GYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLF 119
G+ D+ + T+L+ YS A K+FDE+P RD V+WNV+I C+ AL ++
Sbjct: 137 GFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLHNQALSMY 196
Query: 120 DNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYS 179
+ E G D T + +L +CAH+ AL G +HR + S + + N+LI MY+
Sbjct: 197 KRMGNE--GVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVSNALIDMYA 254
Query: 180 KCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTG 239
KCGSL A VF GM ++DV++W++MI G ++GHG +AI F M +GV P+ TF G
Sbjct: 255 KCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAITFLG 314
Query: 240 VLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVK 299
+L CSH GLV EG+ + MS F + PN+ HYGC+VDL GRAG L+ + ++I +
Sbjct: 315 LLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLENSLEMIYASSCH 374
Query: 300 PDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELR 359
D +WRTLLG+C+IH+++ LGE ++ L++L+A +GDYVL+ ++YS+ D + +R
Sbjct: 375 EDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSAANDAQAFASMR 434
Query: 360 EFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEIT 419
+ + LQT PG S I + VH+FVVDD HP IY L E+ + +AGY E +
Sbjct: 435 KLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEVINRAILAGYKPEDS 494
Query: 420 SELH-NLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGV 478
+ L G+A + HSEKLAIA+G++ T GTT+R+ KNLR+C DCH+F K +S
Sbjct: 495 NRTAPTLSDRCLGSADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFTKYVSKA 554
Query: 479 YNREVIIRDRLRFHHFREGRCSCNDYW 505
+NRE+I+RDR+RFHHF +G CSCNDYW
Sbjct: 555 FNREIIVRDRVRFHHFADGICSCNDYW 581
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 411 bits (1056), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/508 (41%), Positives = 307/508 (60%), Gaps = 7/508 (1%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M R YS ++P E F LF ++ + I + + +K C +L G Q+H ++ G
Sbjct: 100 MARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLG 159
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
+ + TL+++Y+ E A +FD I + V +N +I+ Y R R +AL LF
Sbjct: 160 LDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLF- 218
Query: 121 NLNREESG--CKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMY 178
RE G KP+++T L VL +CA LG+L+ G+ IH+Y +H + + + +LI M+
Sbjct: 219 ---REMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMF 275
Query: 179 SKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFT 238
+KCGSL A +F+ M KD +WSAMI A +G ++ F M+ V PD+ TF
Sbjct: 276 AKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFL 335
Query: 239 GVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGV 298
G+L+ACSH G V+EG + +M FGI+P+I HYG +VDLL RAG L+ AY+ I + +
Sbjct: 336 GLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPI 395
Query: 299 KPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKEL 358
P +WR LL AC H ++ L E+V E + EL GDYV+L NLY+ WE V L
Sbjct: 396 SPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSL 455
Query: 359 REFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEI 418
R+ M ++ PGCS+I + VVHEF D ++++ LDE+ K+LK++GYV +
Sbjct: 456 RKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDT 515
Query: 419 TSELH-NLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSG 477
+ +H N+ +EK L YHSEKLAI FG+L TPPGTTIRV KNLR+C DCHN AK++S
Sbjct: 516 SMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISL 575
Query: 478 VYNREVIIRDRLRFHHFREGRCSCNDYW 505
++ R+V++RD RFHHF +G+CSC D+W
Sbjct: 576 IFGRKVVLRDVQRFHHFEDGKCSCGDFW 603
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Query: 182 GSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVL 241
S+ A +F+ M E D+V +++M G + + + F + G+ PD+ TF +L
Sbjct: 77 SSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLL 136
Query: 242 SACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQA 289
AC+ ++EG L +S G+ N++ ++++ +D A
Sbjct: 137 KACAVAKALEEGRQ-LHCLSMKLGLDDNVYVCPTLINMYTECEDVDSA 183
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 409 bits (1052), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/538 (38%), Positives = 309/538 (57%), Gaps = 35/538 (6%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNP--FACSFAIKCCMKFCSLMGGLQIHARVLR 58
M+RA+ S PE+ F + ++ P + +F ++ C GLQ+H +R
Sbjct: 77 MIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVHGMTIR 136
Query: 59 DGYQLDSQLMTTLMDLYSTF------EKSFE---------------AC----------KL 87
G+ D + T L+ LY+ K F AC KL
Sbjct: 137 RGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKL 196
Query: 88 FDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLG 147
F+ +P+RD +AWN +IS Y + +R+AL +F + E G K + V + VL AC LG
Sbjct: 197 FEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLE--GVKVNGVAMISVLSACTQLG 254
Query: 148 ALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMIS 207
AL+ G H YI + + L +L+ +Y+KCG + A EVF GM EK+V +WS+ ++
Sbjct: 255 ALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALN 314
Query: 208 GLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGIL 267
GLAMNG G +E F M++ GV P+ TF VL CS G VDEG D M +FGI
Sbjct: 315 GLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIE 374
Query: 268 PNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEH 327
P + HYGC+VDL RAG L+ A +I M +KP + +W +LL A R++K++ LG +
Sbjct: 375 PQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKK 434
Query: 328 LIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVV 387
++EL+ G YVLL N+Y+ DW+ V +R+ M KG++ PGCS + + G VHEF V
Sbjct: 435 MLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFV 494
Query: 388 DDVSHPRINEIYQMLDEINKQLKIAGYVAEITSELHNLGAEEKGNALSYHSEKLAIAFGV 447
D SHP+ +I + +I+++L++AGY A+ T + ++ EEK +AL HSEK AIAFG+
Sbjct: 495 GDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGI 554
Query: 448 LATPPGTTIRVAKNLRICVDCHNFAKVLSGVYNREVIIRDRLRFHHFREGRCSCNDYW 505
++ IR+ KNLR+C DCH + ++S ++NRE+I+RDR RFHHF++G CSCN +W
Sbjct: 555 MSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612
Score = 95.9 bits (237), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/318 (24%), Positives = 139/318 (43%), Gaps = 39/318 (12%)
Query: 51 QIHARVLRDGYQLDSQLMTTLMDLYSTFEKSF--EACKLFDEIPQRDTVAWNVLISCYIR 108
QIHA++ DG D L+ + + + + A ++ D + A N +I + +
Sbjct: 24 QIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRSEKPTLFALNSMIRAHCK 83
Query: 109 NQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKM 168
+ + + + + KPD+ T ++QAC L E G ++H G+ +
Sbjct: 84 SPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFDNDP 143
Query: 169 NLCNSLIAMYS-------------------------------KCGSLGMAFEVFKGMPEK 197
++ LI++Y+ +CG + A ++F+GMPE+
Sbjct: 144 HVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPER 203
Query: 198 DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFL 257
D ++W+AMISG A G R+A+ F MQ GV + VLSAC+ G +D+G
Sbjct: 204 DPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAH 263
Query: 258 DRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKH 317
+ ++ I + +VDL + G +++A ++ M K T W + L ++
Sbjct: 264 SYIERN-KIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYT-WSSALNGLAMN-- 319
Query: 318 VTLGERVIEHLIELKAQE 335
GE+ +E L L Q+
Sbjct: 320 -GFGEKCLE-LFSLMKQD 335
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust.
Identities = 201/505 (39%), Positives = 305/505 (60%), Gaps = 3/505 (0%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
+V AY+ + P E +F +MR+ + + A + L G IHA V++ G
Sbjct: 193 IVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMG 252
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
+++ L+ +L +Y+ + A LFD++ + + WN +IS Y +N R+A+ +F
Sbjct: 253 LEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFH 312
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180
+ ++ +PD ++ + ACA +G+LE ++ Y+ Y + + ++LI M++K
Sbjct: 313 EMINKD--VRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAK 370
Query: 181 CGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240
CGS+ A VF ++DVV WSAMI G ++G R+AI + AM+R GV P+D TF G+
Sbjct: 371 CGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGL 430
Query: 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKP 300
L AC+H G+V EG F +RM+ D I P HY CV+DLLGRAG LDQAY++I M V+P
Sbjct: 431 LMACNHSGMVREGWWFFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQP 489
Query: 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELRE 360
T+W LL AC+ H+HV LGE + L + +G YV L NLY++ W++V E+R
Sbjct: 490 GVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRV 549
Query: 361 FMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITS 420
M EKGL GCS + ++G + F V D SHPR EI + ++ I +LK G+VA +
Sbjct: 550 RMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDA 609
Query: 421 ELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYN 480
LH+L EE L HSE++AIA+G+++TP GT +R+ KNLR CV+CH K++S + +
Sbjct: 610 SLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVD 669
Query: 481 REVIIRDRLRFHHFREGRCSCNDYW 505
RE+++RD RFHHF++G CSC DYW
Sbjct: 670 REIVVRDTNRFHHFKDGVCSCGDYW 694
Score = 139 bits (351), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 156/317 (49%), Gaps = 6/317 (1%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
++R YS ++ ++ ++ M+ R+ + F +K C L G +HA+V R G
Sbjct: 90 IIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLG 149
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFD--EIPQRDTVAWNVLISCYIRNQRTRDALCL 118
+ D + L+ LY+ + A +F+ +P+R V+W ++S Y +N +AL +
Sbjct: 150 FDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEI 209
Query: 119 FDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMY 178
F + + + KPD V + VL A L L+ G IH + + G + +L SL MY
Sbjct: 210 FSQMRKMD--VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMY 267
Query: 179 SKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFT 238
+KCG + A +F M +++ W+AMISG A NG+ R+AI+ F M V PD + T
Sbjct: 268 AKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISIT 327
Query: 239 GVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGV 298
+SAC+ G +++ + + + ++ ++D+ + G ++ A +L+ +
Sbjct: 328 SAISACAQVGSLEQARSMYEYVGRS-DYRDDVFISSALIDMFAKCGSVEGA-RLVFDRTL 385
Query: 299 KPDSTIWRTLLGACRIH 315
D +W ++ +H
Sbjct: 386 DRDVVVWSAMIVGYGLH 402
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 140/302 (46%), Gaps = 47/302 (15%)
Query: 51 QIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQ 110
QIHAR+L G Q L+T L+ S+F A ++FD++P+ WN +I Y RN
Sbjct: 39 QIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNN 98
Query: 111 RTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNL 170
+DAL ++ N+ + + PD T +L+AC+ L L+ G +H + G+ + + +
Sbjct: 99 HFQDALLMYSNM--QLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFV 156
Query: 171 CNSLIAMYSKCGSLGMAFEVFKG--MPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRA 228
N LIA+Y+KC LG A VF+G +PE+ +VSW+A++S A NG +A+E F M++
Sbjct: 157 QNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKM 216
Query: 229 GVFPDDQTFTGVLSACS-----------------------------------HCGLVDEG 253
V PD VL+A + CG V
Sbjct: 217 DVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATA 276
Query: 254 MMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM---GVKPDSTIWRTLLG 310
+ D+M PN+ + ++ + G +A + M V+PD+ + +
Sbjct: 277 KILFDKMKS-----PNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAIS 331
Query: 311 AC 312
AC
Sbjct: 332 AC 333
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 109/263 (41%), Gaps = 13/263 (4%)
Query: 114 DALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNS 173
+A CL L SG D L+ + H L+ +IH + G L
Sbjct: 3 EASCLASPLLYTNSGIHSDSFYASLI-DSATHKAQLK---QIHARLLVLGLQFSGFLITK 58
Query: 174 LIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPD 233
LI S G + A +VF +P + W+A+I G + N H +DA+ + MQ A V PD
Sbjct: 59 LIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPD 118
Query: 234 DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLI 293
TF +L ACS + G F+ G ++ ++ L + L A +
Sbjct: 119 SFTFPHLLKACSGLSHLQMG-RFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVF 177
Query: 294 TSMGVKPDSTI--WRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLL---LNLYSS 348
+ + P+ TI W ++ A + + + ++ + D+V L LN ++
Sbjct: 178 EGLPL-PERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKP--DWVALVSVLNAFTC 234
Query: 349 VGDWEKVKELREFMNEKGLQTTP 371
+ D ++ + + + + GL+ P
Sbjct: 235 LQDLKQGRSIHASVVKMGLEIEP 257
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 398 bits (1023), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/509 (39%), Positives = 306/509 (60%), Gaps = 4/509 (0%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKF-CS---LMGGLQIHARV 56
+ RA +++ EE L+ KM + + ++ F ++ +K C+ C+ LM G +IHA +
Sbjct: 149 LFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHL 208
Query: 57 LRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDAL 116
R GY +MTTL+D+Y+ F A +F +P R+ V+W+ +I+CY +N + +AL
Sbjct: 209 TRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEAL 268
Query: 117 CLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIA 176
F + RE P+ VT + VLQACA L ALE G+ IH YI G S + + ++L+
Sbjct: 269 RTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVT 328
Query: 177 MYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQT 236
MY +CG L + VF M ++DVVSW+++IS ++G+G+ AI+ F M G P T
Sbjct: 329 MYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVT 388
Query: 237 FTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM 296
F VL ACSH GLV+EG + M +D GI P I HY C+VDLLGRA LD+A +++ M
Sbjct: 389 FVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDM 448
Query: 297 GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVK 356
+P +W +LLG+CRIH +V L ER L L+ + +G+YVLL ++Y+ W++VK
Sbjct: 449 RTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVK 508
Query: 357 ELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVA 416
+++ + +GLQ PG + ++ ++ FV D +P + +I+ L ++ + +K GY+
Sbjct: 509 RVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIP 568
Query: 417 EITSELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLS 476
+ L+ L EEK + HSEKLA+AFG++ T G IR+ KNLR+C DCH F K +S
Sbjct: 569 QTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFIS 628
Query: 477 GVYNREVIIRDRLRFHHFREGRCSCNDYW 505
+E+++RD RFH F+ G CSC DYW
Sbjct: 629 KFMEKEILVRDVNRFHRFKNGVCSCGDYW 657
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 106/371 (28%), Positives = 168/371 (45%), Gaps = 34/371 (9%)
Query: 2 VRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGY 61
+R S SSP + Y I CC SL L++H +L +G
Sbjct: 66 IRVLSQESSPSQQTY-----------------ELLILCCGHRSSLSDALRVHRHILDNGS 108
Query: 62 QLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDN 121
D L T L+ +YS A K+FD+ +R WN L + L L+
Sbjct: 109 DQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWK 168
Query: 122 LNREESGCKPDDVTCLLVLQACAH----LGALEFGEKIHRYISEHGYGSKMNLCNSLIAM 177
+NR G + D T VL+AC + L G++IH +++ GY S + + +L+ M
Sbjct: 169 MNR--IGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDM 226
Query: 178 YSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQR--AGVFPDDQ 235
Y++ G + A VF GMP ++VVSWSAMI+ A NG +A+ +F M R P+
Sbjct: 227 YARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSV 286
Query: 236 TFTGVLSACSHCGLVDEGMM---FLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQL 292
T VL AC+ +++G + ++ R D ILP I +V + GR G L+ ++
Sbjct: 287 TMVSVLQACASLAALEQGKLIHGYILRRGLD-SILPVI---SALVTMYGRCGKLEVGQRV 342
Query: 293 ITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESG-DYVLLLNLYSSVGD 351
M + D W +L+ + +H + ++ E ++ A + +V +L S G
Sbjct: 343 FDRMHDR-DVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGL 401
Query: 352 WEKVKELREFM 362
E+ K L E M
Sbjct: 402 VEEGKRLFETM 412
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 126/277 (45%), Gaps = 15/277 (5%)
Query: 100 NVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYI 159
N LI + + + A+ + L++E S P T L++ C H +L ++HR+I
Sbjct: 50 NQLIQSLCKEGKLKQAIRV---LSQESS---PSQQTYELLILCCGHRSSLSDALRVHRHI 103
Query: 160 SEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAI 219
++G L LI MYS GS+ A +VF ++ + W+A+ L + GHG + +
Sbjct: 104 LDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVL 163
Query: 220 ESFGAMQRAGVFPDDQTFTGVLSAC--SHCGL--VDEGMMFLDRMSKDFGILPNIHHYGC 275
+ M R GV D T+T VL AC S C + + +G +++ G +++
Sbjct: 164 GLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRR-GYSSHVYIMTT 222
Query: 276 VVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQE 335
+VD+ R G +D A + M V+ + W ++ + R ++
Sbjct: 223 LVDMYARFGCVDYASYVFGGMPVR-NVVSWSAMIACYAKNGKAFEALRTFREMMRETKDS 281
Query: 336 SGDYVLLLNLY---SSVGDWEKVKELREFMNEKGLQT 369
S + V ++++ +S+ E+ K + ++ +GL +
Sbjct: 282 SPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDS 318
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 398 bits (1022), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/505 (40%), Positives = 298/505 (59%), Gaps = 1/505 (0%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M+ Y+ E LFE+M ++ I + + + + CC ++ L G ++H + +
Sbjct: 368 MIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEND 427
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
D + LMD+Y+ EA +F E+ +D ++WN +I Y +N +AL LF
Sbjct: 428 LGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLF- 486
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180
NL EE PD+ T VL ACA L A + G +IH YI +GY S ++ NSL+ MY+K
Sbjct: 487 NLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAK 546
Query: 181 CGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240
CG+L +A +F + KD+VSW+ MI+G M+G G++AI F M++AG+ D+ +F +
Sbjct: 547 CGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSL 606
Query: 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKP 300
L ACSH GLVDEG F + M + I P + HY C+VD+L R G L +AY+ I +M + P
Sbjct: 607 LYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPP 666
Query: 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELRE 360
D+TIW LL CRIH V L E+V E + EL+ + +G YVL+ N+Y+ WE+VK LR+
Sbjct: 667 DATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRK 726
Query: 361 FMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITS 420
+ ++GL+ PGCS I +KG V+ FV D S+P I L ++ ++ GY
Sbjct: 727 RIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKY 786
Query: 421 ELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYN 480
L + EK AL HSEKLA+A G++++ G IRV KNLR+C DCH AK +S +
Sbjct: 787 ALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTR 846
Query: 481 REVIIRDRLRFHHFREGRCSCNDYW 505
RE+++RD RFH F++G CSC +W
Sbjct: 847 REIVLRDSNRFHQFKDGHCSCRGFW 871
Score = 142 bits (359), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 151/296 (51%), Gaps = 6/296 (2%)
Query: 17 LFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYS 76
LF+KM + + + S K S+ GG Q+H +L+ G+ + + +L+ Y
Sbjct: 182 LFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYL 241
Query: 77 TFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTC 136
++ A K+FDE+ +RD ++WN +I+ Y+ N L +F + SG + D T
Sbjct: 242 KNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVF--VQMLVSGIEIDLATI 299
Query: 137 LLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE 196
+ V CA + G +H + + + CN+L+ MYSKCG L A VF+ M +
Sbjct: 300 VSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSD 359
Query: 197 KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMF 256
+ VVS+++MI+G A G +A++ F M+ G+ PD T T VL+ C+ L+DEG
Sbjct: 360 RSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRV 419
Query: 257 LDRMSK-DFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGA 311
+ + + D G +I ++D+ + G + +A + + M VK D W T++G
Sbjct: 420 HEWIKENDLGF--DIFVSNALMDMYAKCGSMQEAELVFSEMRVK-DIISWNTIIGG 472
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/340 (24%), Positives = 147/340 (43%), Gaps = 45/340 (13%)
Query: 29 NPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLF 88
+P ++ C SL G ++ + +G+ +DS L + L +Y+ EA ++F
Sbjct: 93 DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVF 152
Query: 89 DEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGA 148
DE+ + WN+L++ ++ ++ LF + SG + D T V ++ + L +
Sbjct: 153 DEVKIEKALFWNILMNELAKSGDFSGSIGLFKKM--MSSGVEMDSYTFSCVSKSFSSLRS 210
Query: 149 LEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISG 208
+ GE++H +I + G+G + ++ NSL+A Y K + A +VF M E+DV+SW+++I+G
Sbjct: 211 VHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIING 270
Query: 209 LAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSAC------------------------ 244
NG + F M +G+ D T V + C
Sbjct: 271 YVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRE 330
Query: 245 -----------SHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLI 293
S CG +D MS ++ Y ++ R GL +A +L
Sbjct: 331 DRFCNTLLDMYSKCGDLDSAKAVFREMSD-----RSVVSYTSMIAGYAREGLAGEAVKLF 385
Query: 294 TSM---GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIE 330
M G+ PD +L C ++ + G+RV E + E
Sbjct: 386 EEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKE 425
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 395 bits (1015), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/516 (39%), Positives = 308/516 (59%), Gaps = 11/516 (2%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKR-IPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRD 59
M+ YS + +E LF M + + N + + C++ + IH V++
Sbjct: 375 MIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKR 434
Query: 60 GYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLF 119
G D + TLMD+YS K A ++F ++ RD V WN +I+ Y+ ++ DAL L
Sbjct: 435 GLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLL 494
Query: 120 ---DNLNREES------GCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNL 170
NL R+ S KP+ +T + +L +CA L AL G++IH Y ++ + + +
Sbjct: 495 HKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAV 554
Query: 171 CNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGV 230
++L+ MY+KCG L M+ +VF +P+K+V++W+ +I M+G+G++AI+ M GV
Sbjct: 555 GSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGV 614
Query: 231 FPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAY 290
P++ TF V +ACSH G+VDEG+ M D+G+ P+ HY CVVDLLGRAG + +AY
Sbjct: 615 KPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAY 674
Query: 291 QLITSMGVKPDST-IWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSV 349
QL+ M + W +LLGA RIH ++ +GE ++LI+L+ + YVLL N+YSS
Sbjct: 675 QLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSA 734
Query: 350 GDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQL 409
G W+K E+R M E+G++ PGCS I VH+FV D SHP+ ++ L+ + +++
Sbjct: 735 GLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERM 794
Query: 410 KIAGYVAEITSELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCH 469
+ GYV + + LHN+ +EK L HSEKLAIAFG+L T PGT IRVAKNLR+C DCH
Sbjct: 795 RKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCH 854
Query: 470 NFAKVLSGVYNREVIIRDRLRFHHFREGRCSCNDYW 505
K +S + +RE+I+RD RFH F+ G CSC DYW
Sbjct: 855 LATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 139/293 (47%), Gaps = 14/293 (4%)
Query: 34 SFAIKCCMKFCS-------LMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACK 86
SF + + CS LM G Q+HA LR G +L+S ++ TL+ +Y K +
Sbjct: 199 SFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKV 257
Query: 87 LFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHL 146
L RD V WN ++S +N++ +AL + E G +PD+ T VL AC+HL
Sbjct: 258 LLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLE--GVEPDEFTISSVLPACSHL 315
Query: 147 GALEFGEKIHRYISEHGYGSKMNLCNS-LIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAM 205
L G+++H Y ++G + + S L+ MY C + VF GM ++ + W+AM
Sbjct: 316 EMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAM 375
Query: 206 ISGLAMNGHGRDAIESF-GAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDF 264
I+G + N H ++A+ F G + AG+ + T GV+ AC G + K
Sbjct: 376 IAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKR- 434
Query: 265 GILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKH 317
G+ + ++D+ R G +D A ++ M + D W T++ +H
Sbjct: 435 GLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDR-DLVTWNTMITGYVFSEH 486
Score = 102 bits (254), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 123/257 (47%), Gaps = 7/257 (2%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
++R+ S+ E + M I + +A +K + G QIHA V + G
Sbjct: 68 LLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFG 127
Query: 61 YQLDS-QLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLF 119
Y +DS + TL++LY K+FD I +R+ V+WN LIS ++ AL F
Sbjct: 128 YGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAF 187
Query: 120 DNLNREESGCKPDDVTCLLVLQACAHLG---ALEFGEKIHRYISEHGYGSKMNLCNSLIA 176
+ E +P T + V+ AC++L L G+++H Y G + + N+L+A
Sbjct: 188 RCMLDE--NVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSF-IINTLVA 244
Query: 177 MYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQT 236
MY K G L + + +D+V+W+ ++S L N +A+E M GV PD+ T
Sbjct: 245 MYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFT 304
Query: 237 FTGVLSACSHCGLVDEG 253
+ VL ACSH ++ G
Sbjct: 305 ISSVLPACSHLEMLRTG 321
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 137/287 (47%), Gaps = 19/287 (6%)
Query: 30 PFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFD 89
P A +F++ F S + H + Y L + + D+ S A +F
Sbjct: 4 PLAFTFSLPSIFPFPSQLLPFSRH----KHPYLLRATPTSATEDVASAVSG---APSIF- 55
Query: 90 EIPQRDTVAWNV-LISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGA 148
I Q + W + L+ +R+ R+A+ + ++ G KPD+ +L+A A L
Sbjct: 56 -ISQSRSPEWWIDLLRSKVRSNLLREAVLTY--VDMIVLGIKPDNYAFPALLKAVADLQD 112
Query: 149 LEFGEKIHRYISEHGYG-SKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMIS 207
+E G++IH ++ + GYG + + N+L+ +Y KCG G ++VF + E++ VSW+++IS
Sbjct: 113 MELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLIS 172
Query: 208 GLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGIL 267
L A+E+F M V P T V++ACS+ + EG+M + + +G+
Sbjct: 173 SLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPM-PEGLM-MGKQVHAYGLR 230
Query: 268 P---NIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGA 311
N +V + G+ G L + L+ S G + D W T+L +
Sbjct: 231 KGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGR-DLVTWNTVLSS 276
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 395 bits (1014), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/505 (39%), Positives = 299/505 (59%), Gaps = 2/505 (0%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
+ Y+ S E LF+KM + + + + + C+ L G I +
Sbjct: 183 LFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEME 242
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
Q +S + TTL++LY+ K +A +FD + ++D V W+ +I Y N ++ + LF
Sbjct: 243 MQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELF- 301
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180
L + KPD + + L +CA LGAL+ GE I H + + + + N+LI MY+K
Sbjct: 302 -LQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAK 360
Query: 181 CGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240
CG++ FEVFK M EKD+V +A ISGLA NGH + + FG ++ G+ PD TF G+
Sbjct: 361 CGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGL 420
Query: 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKP 300
L C H GL+ +G+ F + +S + + + HYGC+VDL GRAG+LD AY+LI M ++P
Sbjct: 421 LCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRP 480
Query: 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELRE 360
++ +W LL CR+ K L E V++ LI L+ +G+YV L N+YS G W++ E+R+
Sbjct: 481 NAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRD 540
Query: 361 FMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITS 420
MN+KG++ PG S I L+G VHEF+ DD SHP ++IY L+++ ++++ G+V
Sbjct: 541 MMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEF 600
Query: 421 ELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYN 480
++ EEK L YHSEKLA+A G+++T G IRV KNLR+C DCH K++S +
Sbjct: 601 VFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITR 660
Query: 481 REVIIRDRLRFHHFREGRCSCNDYW 505
RE+++RD RFH F G CSCNDYW
Sbjct: 661 REIVVRDNNRFHCFTNGSCSCNDYW 685
Score = 164 bits (415), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/332 (31%), Positives = 161/332 (48%), Gaps = 10/332 (3%)
Query: 13 EGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLM 72
E LF +R+ + + F +K C + S G+ +H+ V++ G+ D MT+L+
Sbjct: 94 ETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLL 153
Query: 73 DLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD 132
+YS + +A KLFDEIP R V W L S Y + R R+A+ LF + E G KPD
Sbjct: 154 SIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKM--VEMGVKPD 211
Query: 133 DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFK 192
+ VL AC H+G L+ GE I +Y+ E + +L+ +Y+KCG + A VF
Sbjct: 212 SYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFD 271
Query: 193 GMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVD- 251
M EKD+V+WS MI G A N ++ IE F M + + PD + G LS+C+ G +D
Sbjct: 272 SMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDL 331
Query: 252 --EGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLL 309
G+ +DR L N+ ++D+ + G + + +++ M K D I +
Sbjct: 332 GEWGISLIDRHE----FLTNLFMANALIDMYAKCGAMARGFEVFKEMKEK-DIVIMNAAI 386
Query: 310 GACRIHKHVTLGERVIEHLIELKAQESGDYVL 341
+ HV L V +L G L
Sbjct: 387 SGLAKNGHVKLSFAVFGQTEKLGISPDGSTFL 418
Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 129/266 (48%), Gaps = 4/266 (1%)
Query: 44 CSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLI 103
C++ QIH ++ D+ L+ L+ F ++ + LF + +N LI
Sbjct: 24 CTVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLI 83
Query: 104 SCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHG 163
+ ++ N + L LF L+ + G T LVL+AC + + G +H + + G
Sbjct: 84 NGFVNNHLFHETLDLF--LSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCG 141
Query: 164 YGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFG 223
+ + SL+++YS G L A ++F +P++ VV+W+A+ SG +G R+AI+ F
Sbjct: 142 FNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFK 201
Query: 224 AMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRA 283
M GV PD VLSAC H G +D G + M ++ + N +V+L +
Sbjct: 202 KMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYM-EEMEMQKNSFVRTTLVNLYAKC 260
Query: 284 GLLDQAYQLITSMGVKPDSTIWRTLL 309
G +++A + SM V+ D W T++
Sbjct: 261 GKMEKARSVFDSM-VEKDIVTWSTMI 285
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis
thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 393 bits (1010), Expect = e-108, Method: Compositional matrix adjust.
Identities = 197/505 (39%), Positives = 302/505 (59%), Gaps = 2/505 (0%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M+ Y+ + ++ F +M + I ++ + A+ C +L G QIHA+ G
Sbjct: 562 MIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSG 621
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
+ D L+ LYS K E+ F++ D +AWN L+S + ++ +AL +F
Sbjct: 622 FSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFV 681
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180
+NRE G ++ T ++A + ++ G+++H I++ GY S+ +CN+LI+MY+K
Sbjct: 682 RMNRE--GIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAK 739
Query: 181 CGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240
CGS+ A + F + K+ VSW+A+I+ + +G G +A++SF M + V P+ T GV
Sbjct: 740 CGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGV 799
Query: 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKP 300
LSACSH GLVD+G+ + + M+ ++G+ P HY CVVD+L RAGLL +A + I M +KP
Sbjct: 800 LSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKP 859
Query: 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELRE 360
D+ +WRTLL AC +HK++ +GE HL+EL+ ++S YVLL NLY+ W+ R+
Sbjct: 860 DALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQ 919
Query: 361 FMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITS 420
M EKG++ PG S I +K +H F V D +HP +EI++ ++ K+ GYV + S
Sbjct: 920 KMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFS 979
Query: 421 ELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYN 480
L+ L E+K + HSEKLAI+FG+L+ P I V KNLR+C DCH + K +S V N
Sbjct: 980 LLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSN 1039
Query: 481 REVIIRDRLRFHHFREGRCSCNDYW 505
RE+I+RD RFHHF G CSC DYW
Sbjct: 1040 REIIVRDAYRFHHFEGGACSCKDYW 1064
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/387 (25%), Positives = 179/387 (46%), Gaps = 41/387 (10%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGL-QIHARVLRD 59
M++ + + E F LF +M + + N S ++ C + QIHAR+L
Sbjct: 157 MIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQ 216
Query: 60 GYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLF 119
G + + + L+DLYS A ++FD + +D +W +IS +N+ +A+ LF
Sbjct: 217 GLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLF 276
Query: 120 DNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYS 179
++ G P VL AC + +LE GE++H + + G+ S +CN+L+++Y
Sbjct: 277 CDMYV--LGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYF 334
Query: 180 KCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTG 239
G+L A +F M ++D V+++ +I+GL+ G+G A+E F M G+ PD T
Sbjct: 335 HLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLAS 394
Query: 240 VLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRA---------------- 283
++ ACS G + G L + G N G +++L +
Sbjct: 395 LVVACSADGTLFRGQQ-LHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVE 453
Query: 284 ------------GLLD---QAYQLITSMGVK---PDSTIWRTLLGACRIHKHVTLGERVI 325
GLLD ++++ M ++ P+ + ++L C + LGE++
Sbjct: 454 NVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIH 513
Query: 326 EHLIELKAQESGDYV--LLLNLYSSVG 350
+I+ Q + YV +L+++Y+ +G
Sbjct: 514 SQIIKTNFQLNA-YVCSVLIDMYAKLG 539
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 137/309 (44%), Gaps = 4/309 (1%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
++ S E+ LF++M + + + + C +L G Q+HA + G
Sbjct: 360 LINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLG 419
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
+ ++++ L++LY+ A F E + V WNV++ Y R++ +F
Sbjct: 420 FASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFR 479
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180
+ EE P+ T +L+ C LG LE GE+IH I + + +C+ LI MY+K
Sbjct: 480 QMQIEE--IVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAK 537
Query: 181 CGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240
G L A+++ KDVVSW+ MI+G A+ +F M G+ D+ T
Sbjct: 538 LGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNA 597
Query: 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKP 300
+SAC+ + EG + G ++ +V L R G ++++Y L
Sbjct: 598 VSACAGLQALKEGQQIHAQACVS-GFSSDLPFQNALVTLYSRCGKIEESY-LAFEQTEAG 655
Query: 301 DSTIWRTLL 309
D+ W L+
Sbjct: 656 DNIAWNALV 664
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 108/389 (27%), Positives = 171/389 (43%), Gaps = 42/389 (10%)
Query: 4 AYSMSSSPEEGFY--LFEKMRQKRIPTNPFACSFAIKCCMKFC-SLMGGLQIHARVLRDG 60
A S+ S +E F + + + I N + ++ C+K SL G ++H+++L+ G
Sbjct: 56 AISVYISEDESFQEKRIDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLG 115
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
+ L L D Y + A K+FDE+P+R WN +I + LF
Sbjct: 116 LDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFV 175
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFG--EKIHRYISEHGYGSKMNLCNSLIAMY 178
+ E P++ T VL+AC G++ F E+IH I G +CN LI +Y
Sbjct: 176 RMVSE--NVTPNEGTFSGVLEACRG-GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLY 232
Query: 179 SKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFT 238
S+ G + +A VF G+ KD SW AMISGL+ N +AI F M G+ P F+
Sbjct: 233 SRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFS 292
Query: 239 GVLSACSHCGLVD-----EGMMFLDRMSKD-------------FGILPNIHH-------- 272
VLSAC ++ G++ S D G L + H
Sbjct: 293 SVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQR 352
Query: 273 ----YGCVVDLLGRAGLLDQAYQLITSM---GVKPDSTIWRTLLGACRIHKHVTLGERVI 325
Y +++ L + G ++A +L M G++PDS +L+ AC + G+++
Sbjct: 353 DAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLH 412
Query: 326 EHLIELK-AQESGDYVLLLNLYSSVGDWE 353
+ +L A + LLNLY+ D E
Sbjct: 413 AYTTKLGFASNNKIEGALLNLYAKCADIE 441
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/505 (38%), Positives = 305/505 (60%), Gaps = 7/505 (1%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M+ AYS ++ L M + + N + S ++ C + +H ++++G
Sbjct: 133 MISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVR---MLHCGIIKEG 189
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
+ D + + L+D+++ + +A +FDE+ D + WN +I + +N R+ AL LF
Sbjct: 190 LESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFK 249
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180
+ R +G + T VL+AC L LE G + H +I + Y + L N+L+ MY K
Sbjct: 250 RMKR--AGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCK 305
Query: 181 CGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240
CGSL A VF M E+DV++WS MISGLA NG+ ++A++ F M+ +G P+ T GV
Sbjct: 306 CGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGV 365
Query: 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKP 300
L ACSH GL+++G + M K +GI P HYGC++DLLG+AG LD A +L+ M +P
Sbjct: 366 LFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEP 425
Query: 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELRE 360
D+ WRTLLGACR+ +++ L E + +I L +++G Y LL N+Y++ W+ V+E+R
Sbjct: 426 DAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRT 485
Query: 361 FMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITS 420
M ++G++ PGCS I + +H F++ D SHP+I E+ + L+++ +L GYV E
Sbjct: 486 RMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNF 545
Query: 421 ELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYN 480
L +L E+ ++L +HSEKLA+AFG++ P IR+ KNLRIC DCH F K+ S +
Sbjct: 546 VLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEI 605
Query: 481 REVIIRDRLRFHHFREGRCSCNDYW 505
R ++IRD +R+HHF++G+CSC DYW
Sbjct: 606 RSIVIRDPIRYHHFQDGKCSCGDYW 630
Score = 106 bits (265), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 140/277 (50%), Gaps = 15/277 (5%)
Query: 37 IKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDT 96
IKCC+ ++ G I + +G++ L+ L+++Y F +A +LFD++PQR+
Sbjct: 68 IKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNV 127
Query: 97 VAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIH 156
++W +IS Y + + + AL L + R+ +P+ T VL++C + + +H
Sbjct: 128 ISWTTMISAYSKCKIHQKALELLVLMLRD--NVRPNVYTYSSVLRSCNGMSDVRM---LH 182
Query: 157 RYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGR 216
I + G S + + ++LI +++K G A VF M D + W+++I G A N
Sbjct: 183 CGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSD 242
Query: 217 DAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGM---MFLDRMSKDFGILPNIHHY 273
A+E F M+RAG + T T VL AC+ L++ GM + + + +D IL N
Sbjct: 243 VALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDL-ILNN---- 297
Query: 274 GCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLG 310
+VD+ + G L+ A ++ M + D W T++
Sbjct: 298 -ALVDMYCKCGSLEDALRVFNQMKER-DVITWSTMIS 332
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 104/222 (46%), Gaps = 26/222 (11%)
Query: 100 NVLISCYIRNQRTRD---ALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIH 156
+L+S + R RD A+ D+L + G D T +++ C A+ G I
Sbjct: 27 TLLLSEFTRLCYQRDLPRAMKAMDSL--QSHGLWADSATYSELIKCCISNRAVHEGNLIC 84
Query: 157 RYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGR 216
R++ +G+ M L N LI MY K L A ++F MP+++V+SW+ MIS + +
Sbjct: 85 RHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQ 144
Query: 217 DAIESFGAMQRAGVFPDDQTFTGVLSACS--------HCGLVDEGMMFLDRMSKDFGILP 268
A+E M R V P+ T++ VL +C+ HCG++ EG+
Sbjct: 145 KALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLE------------S 192
Query: 269 NIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLG 310
++ ++D+ + G + A + M V D+ +W +++G
Sbjct: 193 DVFVRSALIDVFAKLGEPEDALSVFDEM-VTGDAIVWNSIIG 233
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust.
Identities = 208/513 (40%), Positives = 304/513 (59%), Gaps = 9/513 (1%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNP--FACSFAIKCCMKFCSLM--GGL--QIHA 54
M+R Y ++ + + LF+ + + F S + + CS + GL IH+
Sbjct: 148 MIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHS 207
Query: 55 RVLRDGYQLDSQLMTTLMDLYSTFEKSFEAC--KLFDEIPQRDTVAWNVLISCYIRNQRT 112
V++ G+ + TL+D Y+ + A K+FD+I +D V++N ++S Y ++ +
Sbjct: 208 FVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMS 267
Query: 113 RDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCN 172
+A +F L + + + +T VL A +H GAL G+ IH + G + +
Sbjct: 268 NEAFEVFRRLVKNKV-VTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGT 326
Query: 173 SLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP 232
S+I MY KCG + A + F M K+V SW+AMI+G M+GH A+E F AM +GV P
Sbjct: 327 SIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRP 386
Query: 233 DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQL 292
+ TF VL+ACSH GL EG + + M FG+ P + HYGC+VDLLGRAG L +AY L
Sbjct: 387 NYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDL 446
Query: 293 ITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDW 352
I M +KPDS IW +LL ACRIHK+V L E + L EL + G Y+LL ++Y+ G W
Sbjct: 447 IQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRW 506
Query: 353 EKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIA 412
+ V+ +R M +GL PG S + L G VH F++ D HP+ +IY+ L E+N++L A
Sbjct: 507 KDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEA 566
Query: 413 GYVAEITSELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFA 472
GYV+ +S H++ EEK L HSEKLAIAFG++ T PG+T+ V KNLR+C DCHN
Sbjct: 567 GYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVI 626
Query: 473 KVLSGVYNREVIIRDRLRFHHFREGRCSCNDYW 505
K++S + +RE ++RD RFHHF++G CSC DYW
Sbjct: 627 KLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
Score = 122 bits (306), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 162/332 (48%), Gaps = 13/332 (3%)
Query: 8 SSSPEEGFYLFEKMRQKRI-PT-NPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDS 65
S E F MR+ + PT + F C AIK C + G Q H + GYQ D
Sbjct: 54 SGDSAEALLAFSSMRKLSLYPTRSSFPC--AIKACSSLFDIFSGKQTHQQAFVFGYQSDI 111
Query: 66 QLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNL--- 122
+ + L+ +YST K +A K+FDEIP+R+ V+W +I Y N DA+ LF +L
Sbjct: 112 FVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVD 171
Query: 123 -NREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKC 181
N ++ D + + V+ AC+ + A E IH ++ + G+ +++ N+L+ Y+K
Sbjct: 172 ENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKG 231
Query: 182 GSLGMAF--EVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQ-TFT 238
G G+A ++F + +KD VS+++++S A +G +A E F + + V + T +
Sbjct: 232 GEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLS 291
Query: 239 GVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGV 298
VL A SH G + G D++ + G+ ++ ++D+ + G ++ A + M
Sbjct: 292 TVLLAVSHSGALRIGKCIHDQVIR-MGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKN 350
Query: 299 KPDSTIWRTLLGACRIHKHVTLGERVIEHLIE 330
K + W ++ +H H + +I+
Sbjct: 351 KNVRS-WTAMIAGYGMHGHAAKALELFPAMID 381
Score = 40.8 bits (94), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 33/52 (63%)
Query: 194 MPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACS 245
+ + DV SW+++I+ LA +G +A+ +F +M++ ++P +F + ACS
Sbjct: 36 VDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACS 87
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/437 (43%), Positives = 282/437 (64%), Gaps = 2/437 (0%)
Query: 69 TTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESG 128
T++ Y+ K EA LFD++P+RD V+W +I+ Y ++ + +AL LF + RE G
Sbjct: 347 NTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMERE--G 404
Query: 129 CKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAF 188
+ + + L CA + ALE G+++H + + GY + + N+L+ MY KCGS+ A
Sbjct: 405 GRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEAN 464
Query: 189 EVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCG 248
++FK M KD+VSW+ MI+G + +G G A+ F +M+R G+ PDD T VLSACSH G
Sbjct: 465 DLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTG 524
Query: 249 LVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTL 308
LVD+G + M++D+G++PN HY C+VDLLGRAGLL+ A+ L+ +M +PD+ IW TL
Sbjct: 525 LVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTL 584
Query: 309 LGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQ 368
LGA R+H + L E + + ++ + SG YVLL NLY+S G W V +LR M +KG++
Sbjct: 585 LGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVK 644
Query: 369 TTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITSELHNLGAE 428
PG S I ++ H F V D HP +EI+ L+E++ ++K AGYV++ + LH++ E
Sbjct: 645 KVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEE 704
Query: 429 EKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYNREVIIRDR 488
EK + YHSE+LA+A+G++ G IRV KNLR+C DCHN K ++ + R +I+RD
Sbjct: 705 EKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDN 764
Query: 489 LRFHHFREGRCSCNDYW 505
RFHHF++G CSC DYW
Sbjct: 765 NRFHHFKDGSCSCGDYW 781
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/356 (23%), Positives = 155/356 (43%), Gaps = 45/356 (12%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKR-IPTNPFACSFAI-----KCCMKFCS--------- 45
M+ Y+ + ++ +F++M +K + N ++ + CM F S
Sbjct: 163 MLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSW 222
Query: 46 --LMGGLQ-----IHARVLRDGYQL-DSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTV 97
L+GG + AR D + D T++ Y+ K EA +LFDE P +D
Sbjct: 223 NCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVF 282
Query: 98 AWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHR 157
W ++S YI+N+ +A LFD + ++V+ +L +E +++
Sbjct: 283 TWTAMVSGYIQNRMVEEARELFDKMPER------NEVSWNAMLAGYVQGERMEMAKELFD 336
Query: 158 YISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRD 217
+ ++ N++I Y++CG + A +F MP++D VSW+AMI+G + +GH +
Sbjct: 337 VMP----CRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFE 392
Query: 218 AIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVV 277
A+ F M+R G + +F+ LS C+ ++ G R+ K + GC V
Sbjct: 393 ALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVK------GGYETGCFV 446
Query: 278 D-----LLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHL 328
+ + G +++A L M K D W T++ H + R E +
Sbjct: 447 GNALLLMYCKCGSIEEANDLFKEMAGK-DIVSWNTMIAGYSRHGFGEVALRFFESM 501
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 100/216 (46%), Gaps = 22/216 (10%)
Query: 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEK 154
D WNV IS Y+R R +AL +F + R S V+ ++ G E K
Sbjct: 63 DIKEWNVAISSYMRTGRCNEALRVFKRMPRWSS------VSYNGMISGYLRNGEFELARK 116
Query: 155 IHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGH 214
+ + E S N +I Y + +LG A E+F+ MPE+DV SW+ M+SG A NG
Sbjct: 117 LFDEMPERDLVS----WNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGC 172
Query: 215 GRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEG-MMFLDRMSKDFGILPNIHHY 273
DA F M +D ++ +LSA ++E M+F R +++ ++ +
Sbjct: 173 VDDARSVFDRMPE----KNDVSWNALLSAYVQNSKMEEACMLFKSR--ENWALVS----W 222
Query: 274 GCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLL 309
C++ + + +A Q SM V+ D W T++
Sbjct: 223 NCLLGGFVKKKKIVEARQFFDSMNVR-DVVSWNTII 257
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 108/251 (43%), Gaps = 39/251 (15%)
Query: 84 ACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNRE-------------ESGCK 130
A KLFDE+P+RD V+WNV+I Y+RN+ A LF+ + ++GC
Sbjct: 114 ARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCV 173
Query: 131 PD------------DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMY 178
D DV+ +L A +E E + S + + N L+ +
Sbjct: 174 DDARSVFDRMPEKNDVSWNALLSAYVQNSKME--EACMLFKSRENWA--LVSWNCLLGGF 229
Query: 179 SKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFT 238
K + A + F M +DVVSW+ +I+G A +G +A + F VF T+T
Sbjct: 230 VKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVF----TWT 285
Query: 239 GVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGV 298
++S +V+E D+M + + N G V + ++ A +L M
Sbjct: 286 AMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYV-----QGERMEMAKELFDVMPC 340
Query: 299 KPDSTIWRTLL 309
+ ST W T++
Sbjct: 341 RNVST-WNTMI 350
>sp|Q9FX24|PPR71_ARATH Pentatricopeptide repeat-containing protein At1g34160
OS=Arabidopsis thaliana GN=PCMP-H68 PE=2 SV=2
Length = 581
Score = 388 bits (997), Expect = e-107, Method: Compositional matrix adjust.
Identities = 205/516 (39%), Positives = 303/516 (58%), Gaps = 19/516 (3%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIP------TNPFACSFAIKCCMKFCSLMGGLQIHA 54
++R ++ SS P F + M Q+ + CSF +K C + Q+H
Sbjct: 74 IIRGFAGSSHPSLAFSWYRSMLQQSSSSSAICRVDALTCSFTLKACARALCSSAMDQLHC 133
Query: 55 RVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRD 114
++ R G DS L TTL+D YS A KLFDE+P RD +WN LI+ + R +
Sbjct: 134 QINRRGLSADSLLCTTLLDAYSKNGDLISAYKLFDEMPVRDVASWNALIAGLVSGNRASE 193
Query: 115 ALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGS-KMNLCNS 173
A+ L+ + E G + +VT + L AC+HLG ++ GE I HGY + + + N+
Sbjct: 194 AMELYKRM--ETEGIRRSEVTVVAALGACSHLGDVKEGENIF-----HGYSNDNVIVSNA 246
Query: 174 LIAMYSKCGSLGMAFEVFKGMP-EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP 232
I MYSKCG + A++VF+ +K VV+W+ MI+G A++G A+E F ++ G+ P
Sbjct: 247 AIDMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMITGFAVHGEAHRALEIFDKLEDNGIKP 306
Query: 233 DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQL 292
DD ++ L+AC H GLV+ G+ + M+ G+ N+ HYGCVVDLL RAG L +A+ +
Sbjct: 307 DDVSYLAALTACRHAGLVEYGLSVFNNMACK-GVERNMKHYGCVVDLLSRAGRLREAHDI 365
Query: 293 ITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDW 352
I SM + PD +W++LLGA I+ V + E + E+ GD+VLL N+Y++ G W
Sbjct: 366 ICSMSMIPDPVLWQSLLGASEIYSDVEMAEIASREIKEMGVNNDGDFVLLSNVYAAQGRW 425
Query: 353 EKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIA 412
+ V +R+ M K ++ PG S I KG +HEF D SH + EIY+ +DEI +++
Sbjct: 426 KDVGRVRDDMESKQVKKIPGLSYIEAKGTIHEFYNSDKSHEQWREIYEKIDEIRFKIRED 485
Query: 413 GYVAEITSELHNLGAEEKGNALSYHSEKLAIAFGVL---ATPPGTTIRVAKNLRICVDCH 469
GYVA+ LH++G EEK NAL YHSEKLA+A+G++ + +RV NLRIC DCH
Sbjct: 486 GYVAQTGLVLHDIGEEEKENALCYHSEKLAVAYGLMMMDGADEESPVRVINNLRICGDCH 545
Query: 470 NFAKVLSGVYNREVIIRDRLRFHHFREGRCSCNDYW 505
K +S +Y RE+I+RDR+RFH F++G CSC D+W
Sbjct: 546 VVFKHISKIYKREIIVRDRVRFHRFKDGSCSCRDFW 581
Score = 37.0 bits (84), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 109/288 (37%), Gaps = 58/288 (20%)
Query: 179 SKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAM------QRAGVFP 232
S G L A ++F+ +P+ W+A+I G A + H A + +M A
Sbjct: 48 SPFGDLSFAVQIFRYIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAICRV 107
Query: 233 DDQTFTGVLSACS-----------HCGLVDEGM--------MFLDRMSKD---------F 264
D T + L AC+ HC + G+ LD SK+ F
Sbjct: 108 DALTCSFTLKACARALCSSAMDQLHCQINRRGLSADSLLCTTLLDAYSKNGDLISAYKLF 167
Query: 265 GILP--NIHHYGCVVDLL---GRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVT 319
+P ++ + ++ L RA + Y+ + + G++ LGAC V
Sbjct: 168 DEMPVRDVASWNALIAGLVSGNRASEAMELYKRMETEGIRRSEVTVVAALGACSHLGDVK 227
Query: 320 LGERVIEHLIELKAQESGDYVLLLN----LYSSVGDWEKVKELREFMNEKGLQTTPGCST 375
GE + S D V++ N +YS G +K ++ E Q T S
Sbjct: 228 EGENIFHGY-------SNDNVIVSNAAIDMYSKCGFVDKAYQVFE-------QFTGKKSV 273
Query: 376 IGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITSELH 423
+ ++ F V +H R EI+ L++ + Y+A +T+ H
Sbjct: 274 VTWNTMITGFAVHGEAH-RALEIFDKLEDNGIKPDDVSYLAALTACRH 320
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 385 bits (990), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/460 (40%), Positives = 276/460 (60%), Gaps = 2/460 (0%)
Query: 46 LMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISC 105
LM IH L+ + + + T L +YS + A KLFDE P++ +WN +IS
Sbjct: 335 LMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISG 394
Query: 106 YIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYG 165
Y +N T DA+ LF + + E P +TC +L ACA LGAL G+ +H + +
Sbjct: 395 YTQNGLTEDAISLFREMQKSEFSPNPVTITC--ILSACAQLGALSLGKWVHDLVRSTDFE 452
Query: 166 SKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAM 225
S + + +LI MY+KCGS+ A +F M +K+ V+W+ MISG ++G G++A+ F M
Sbjct: 453 SSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEM 512
Query: 226 QRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGL 285
+G+ P TF VL ACSH GLV EG + M +G P++ HY C+VD+LGRAG
Sbjct: 513 LNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGH 572
Query: 286 LDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNL 345
L +A Q I +M ++P S++W TLLGACRIHK L V E L EL G +VLL N+
Sbjct: 573 LQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNI 632
Query: 346 YSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEI 405
+S+ ++ + +R+ ++ L PG + I + H F D SHP++ EIY+ L+++
Sbjct: 633 HSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKL 692
Query: 406 NKQLKIAGYVAEITSELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRIC 465
+++ AGY E LH++ EE+ + HSE+LAIAFG++AT PGT IR+ KNLR+C
Sbjct: 693 EGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVC 752
Query: 466 VDCHNFAKVLSGVYNREVIIRDRLRFHHFREGRCSCNDYW 505
+DCH K++S + R +++RD RFHHF++G CSC DYW
Sbjct: 753 LDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792
Score = 119 bits (299), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 106/437 (24%), Positives = 187/437 (42%), Gaps = 45/437 (10%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKR-IPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRD 59
++R +S++ SP +F +R+ + N +FAI F G IH + + D
Sbjct: 89 LMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVD 148
Query: 60 GYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLF 119
G + L + ++ +Y F + +A K+FD +P++DT+ WN +IS Y +N+ +++ +F
Sbjct: 149 GCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVF 208
Query: 120 DNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYS 179
+L ES + D T L +L A A L L G +IH ++ G S + I++YS
Sbjct: 209 RDL-INESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYS 267
Query: 180 KCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTG 239
KCG + M +F+ + D+V+++AMI G NG ++ F + +G T
Sbjct: 268 KCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVS 327
Query: 240 VLSACSHCGL-------------------------VDEGMMFLDRMSKDFGILP--NIHH 272
++ H L V + ++ K F P ++
Sbjct: 328 LVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPS 387
Query: 273 YGCVVDLLGRAGLLDQAYQLITSMG---VKPDSTIWRTLLGACRIHKHVTLGERVIEHLI 329
+ ++ + GL + A L M P+ +L AC ++LG + + L+
Sbjct: 388 WNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLG-KWVHDLV 446
Query: 330 ELKAQESGDYV--LLLNLYSSVGDWEKVKELREFMNEKGLQT-TPGCSTIGLKGVVHEFV 386
ES YV L+ +Y+ G + + L + M +K T S GL G E
Sbjct: 447 RSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQE-- 504
Query: 387 VDDVSHPRINEIYQMLD 403
+N Y+ML+
Sbjct: 505 -------ALNIFYEMLN 514
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 101/209 (48%), Gaps = 6/209 (2%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M+ Y+ + E+ LF +M++ NP + + C + +L G +H V
Sbjct: 391 MISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTD 450
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLF- 119
++ + T L+ +Y+ EA +LFD + +++ V WN +IS Y + + ++AL +F
Sbjct: 451 FESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFY 510
Query: 120 DNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKI-HRYISEHGYGSKMNLCNSLIAMY 178
+ LN SG P VT L VL AC+H G ++ G++I + I +G+ + ++ +
Sbjct: 511 EMLN---SGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDIL 567
Query: 179 SKCGSLGMAFEVFKGMP-EKDVVSWSAMI 206
+ G L A + + M E W ++
Sbjct: 568 GRAGHLQRALQFIEAMSIEPGSSVWETLL 596
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 81/358 (22%), Positives = 140/358 (39%), Gaps = 47/358 (13%)
Query: 51 QIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQ 110
Q HA+++ G++ D L+T L S + A +F + + D +NVL+ + N+
Sbjct: 38 QTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNE 97
Query: 111 RTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNL 170
+L +F +L R+ + KP+ T + A + G IH G S++ L
Sbjct: 98 SPHSSLSVFAHL-RKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLL 156
Query: 171 CNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFG------- 223
++++ MY K + A +VF MPEKD + W+ MISG N ++I+ F
Sbjct: 157 GSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESC 216
Query: 224 -----------------------AMQ------RAGVFPDDQTFTGVLSACSHCGLVDEGM 254
MQ + G + D TG +S S CG + G
Sbjct: 217 TRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGS 276
Query: 255 MFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRI 314
K P+I Y ++ G + + L + + TL+ +
Sbjct: 277 ALFREFRK-----PDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPV 331
Query: 315 HKHVTLGERVIEHLIELKAQ---ESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQT 369
H+ L + H LK+ + L +YS + + E ++L + EK L +
Sbjct: 332 SGHLMLIYAI--HGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPS 387
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 99/226 (43%), Gaps = 17/226 (7%)
Query: 154 KIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNG 213
+ H I HG+ + ++L L S G++ A ++F + DV ++ ++ G ++N
Sbjct: 38 QTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNE 97
Query: 214 HGRDAIESFGAMQRA-GVFPDDQTFTGVLSACS-----HCGLVDEGMMFLDRMSKDFGIL 267
++ F ++++ + P+ T+ +SA S G V G +D + +
Sbjct: 98 SPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLG 157
Query: 268 PNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEH 327
NI V + + ++ A ++ M K D+ +W T++ R ++ +V
Sbjct: 158 SNI------VKMYFKFWRVEDARKVFDRMPEK-DTILWNTMISGYRKNEMYVESIQVFRD 210
Query: 328 LIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGC 373
LI ++ D LL++ +V + ++ELR M L T GC
Sbjct: 211 LIN-ESCTRLDTTTLLDILPAVAE---LQELRLGMQIHSLATKTGC 252
>sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920
OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1
Length = 606
Score = 384 bits (986), Expect = e-105, Method: Compositional matrix adjust.
Identities = 200/511 (39%), Positives = 298/511 (58%), Gaps = 13/511 (2%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M+R Y S EE + +M Q+ + F +K C + S+ G QIH +V + G
Sbjct: 103 MIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKLG 162
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLF- 119
+ D + +L+++Y + + +F+++ + +W+ ++S + L LF
Sbjct: 163 LEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSECLLLFR 222
Query: 120 -----DNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSL 174
NL EESG V+ LL ACA+ GAL G IH ++ + + + SL
Sbjct: 223 GMCSETNLKAEESGM----VSALL---ACANTGALNLGMSIHGFLLRNISELNIIVQTSL 275
Query: 175 IAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDD 234
+ MY KCG L A +F+ M +++ +++SAMISGLA++G G A+ F M + G+ PD
Sbjct: 276 VDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDH 335
Query: 235 QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLIT 294
+ VL+ACSH GLV EG M K+ + P HYGC+VDLLGRAGLL++A + I
Sbjct: 336 VVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQ 395
Query: 295 SMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEK 354
S+ ++ + IWRT L CR+ +++ LG+ + L++L + GDY+L+ NLYS W+
Sbjct: 396 SIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDD 455
Query: 355 VKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGY 414
V R + KGL+ TPG S + LKG H FV D SHP+ EIY+ML ++ QLK GY
Sbjct: 456 VARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKMLHQMEWQLKFEGY 515
Query: 415 VAEITSELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKV 474
++T L N+ EEK L HS+K+AIAFG+L TPPG+ I++A+NLR+C DCH + K
Sbjct: 516 SPDLTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTPPGSIIKIARNLRMCSDCHTYTKK 575
Query: 475 LSGVYNREVIIRDRLRFHHFREGRCSCNDYW 505
+S +Y RE+++RDR RFH F+ G CSC DYW
Sbjct: 576 ISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 84/179 (46%), Gaps = 7/179 (3%)
Query: 136 CLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCG---SLGMAFEVFK 192
CL +L+ C ++ EF + R+I + S +S++A + G S+ A +F+
Sbjct: 33 CLYLLKRCHNID--EFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASIFR 90
Query: 193 GMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDE 252
G+ + ++ MI G +A+ + M + G PD+ T+ +L AC+ + E
Sbjct: 91 GIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIRE 150
Query: 253 GMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGA 311
G ++ K G+ ++ ++++ GR G ++ + + + K ++ W +++ A
Sbjct: 151 GKQIHGQVFK-LGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAAS-WSSMVSA 207
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust.
Identities = 201/505 (39%), Positives = 294/505 (58%), Gaps = 2/505 (0%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M+ Y+ S + LF M ++ ++ F + K C ++ G Q+HA ++ G
Sbjct: 488 MMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSG 547
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
Y LD + + ++D+Y A FD IP D VAW +IS I N A +F
Sbjct: 548 YDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFS 607
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180
+ G PD+ T + +A + L ALE G +IH + + + SL+ MY+K
Sbjct: 608 QMRL--MGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAK 665
Query: 181 CGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240
CGS+ A+ +FK + ++ +W+AM+ GLA +G G++ ++ F M+ G+ PD TF GV
Sbjct: 666 CGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGV 725
Query: 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKP 300
LSACSH GLV E + M D+GI P I HY C+ D LGRAGL+ QA LI SM ++
Sbjct: 726 LSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEA 785
Query: 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELRE 360
++++RTLL ACR+ G+RV L+EL+ +S YVLL N+Y++ W+++K R
Sbjct: 786 SASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLART 845
Query: 361 FMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITS 420
M ++ PG S I +K +H FVVDD S+ + IY+ + ++ + +K GYV E
Sbjct: 846 MMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDF 905
Query: 421 ELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYN 480
L ++ EEK AL YHSEKLA+AFG+L+TPP T IRV KNLR+C DCHN K ++ VYN
Sbjct: 906 TLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYN 965
Query: 481 REVIIRDRLRFHHFREGRCSCNDYW 505
RE+++RD RFH F++G CSC DYW
Sbjct: 966 REIVLRDANRFHRFKDGICSCGDYW 990
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 130/308 (42%), Gaps = 30/308 (9%)
Query: 18 FEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYST 77
F M + + + + +K SL G Q+H L+ G L + +L+++Y
Sbjct: 303 FADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCK 362
Query: 78 FEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCL 137
K A +FD + +RD ++WN +I+ +N +A+CLF L R G KPD T
Sbjct: 363 LRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLR--CGLKPDQYTMT 420
Query: 138 LVLQACAHLG-ALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE 196
VL+A + L L +++H + + S + +LI YS+ + A E+
Sbjct: 421 SVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEA-EILFERHN 479
Query: 197 KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMF 256
D+V+W+AM++G + G ++ F M + G DD T V C +++G
Sbjct: 480 FDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQG--- 536
Query: 257 LDRMSKDFGILPNIHHY----GCVVDLLGRAGLLD--------QAYQLITSMGVKPDSTI 304
+H Y G +DL +G+LD A Q PD
Sbjct: 537 -----------KQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVA 585
Query: 305 WRTLLGAC 312
W T++ C
Sbjct: 586 WTTMISGC 593
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 93/197 (47%), Gaps = 7/197 (3%)
Query: 46 LMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISC 105
LM G HAR+L + L+ L+ +YS A ++FD++P RD V+WN +++
Sbjct: 55 LMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAA 114
Query: 106 YIRN-----QRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYIS 160
Y ++ + + A LF L ++ +T +L+ C H G + E H Y
Sbjct: 115 YAQSSECVVENIQQAFLLFRILRQDV--VYTSRMTLSPMLKLCLHSGYVWASESFHGYAC 172
Query: 161 EHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIE 220
+ G + +L+ +Y K G + +F+ MP +DVV W+ M+ G +AI+
Sbjct: 173 KIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAID 232
Query: 221 SFGAMQRAGVFPDDQTF 237
A +G+ P++ T
Sbjct: 233 LSSAFHSSGLNPNEITL 249
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 18/179 (10%)
Query: 138 LVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEK 197
L+L C H L F E R+ L N+LI+MYSKCGSL A VF MP++
Sbjct: 55 LMLGKCTHARILTFEENPERF-----------LINNLISMYSKCGSLTYARRVFDKMPDR 103
Query: 198 DVVSWSAMISGLAMNG-----HGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDE 252
D+VSW+++++ A + + + A F +++ V+ T + +L C H G V
Sbjct: 104 DLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWA 163
Query: 253 GMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGA 311
F K G+ + G +V++ + G + + L M + D +W +L A
Sbjct: 164 SESFHGYACK-IGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYR-DVVLWNLMLKA 220
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 7/144 (4%)
Query: 1 MVRAYSMSS-----SPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHAR 55
++ AY+ SS + ++ F LF +RQ + T+ S +K C+ + H
Sbjct: 111 ILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGY 170
Query: 56 VLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDA 115
+ G D + L+++Y F K E LF+E+P RD V WN+++ Y+ +A
Sbjct: 171 ACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEA 230
Query: 116 LCLFDNLNREESGCKPDDVTCLLV 139
+ L + SG P+++T L+
Sbjct: 231 IDLSSAFH--SSGLNPNEITLRLL 252
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust.
Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 23/515 (4%)
Query: 9 SSPEEGFYLFEKMRQK-RIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQL 67
S EE F L+ KM ++ + F +K C G Q+H ++++ G+ D +
Sbjct: 129 SRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYV 188
Query: 68 MTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREES 127
L+ LY + A K+FDE+P+R V+WN +I +R AL LF + R
Sbjct: 189 NNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQR--- 245
Query: 128 GCKPDDVTCLLVLQACAHLGALEFGEKIHRYI---SEHGYGSKMNLCNSLIAMYSKCGSL 184
+PD T VL ACA LG+L G H ++ + + + NSLI MY KCGSL
Sbjct: 246 SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSL 305
Query: 185 GMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAM--QRAGVFPDDQTFTGVLS 242
MA +VF+GM ++D+ SW+AMI G A +G +A+ F M +R V P+ TF G+L
Sbjct: 306 RMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLI 365
Query: 243 ACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDS 302
AC+H G V++G + D M +D+ I P + HYGC+VDL+ RAG + +A ++ SM +KPD+
Sbjct: 366 ACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDA 425
Query: 303 TIWRTLLGAC-RIHKHVTLGERVIEHLIELKAQE-------SGDYVLLLNLYSSVGDWEK 354
IWR+LL AC + V L E + ++I K SG YVLL +Y+S W
Sbjct: 426 VIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWND 485
Query: 355 VKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGY 414
V +R+ M+E G++ PGCS+I + G+ HEF D SHP+ +IYQ L I+ +L+ GY
Sbjct: 486 VGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGY 545
Query: 415 VAEITS----ELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHN 470
+ + + + N G++E +L HSE+LAIAFG++ PP T IR+ KNLR+C DCH
Sbjct: 546 LPDRSQAPLVDATNDGSKEY--SLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHE 603
Query: 471 FAKVLSGVYNREVIIRDRLRFHHFREGRCSCNDYW 505
K++S V+N E+I+RDR+RFHHF++G CSC DYW
Sbjct: 604 VTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 638
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/329 (29%), Positives = 152/329 (46%), Gaps = 14/329 (4%)
Query: 44 CSLMGGL-QIHARVLRDGYQLDSQ---LMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAW 99
CS M L Q+HA LR Y + L ++ L S+F A ++FD I + W
Sbjct: 58 CSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMW 117
Query: 100 NVLI-SCYIRNQRTRDALCLFDN-LNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHR 157
N LI +C R +A L+ L R ES PD T VL+ACA++ G+++H
Sbjct: 118 NTLIRACAHDVSRKEEAFMLYRKMLERGESS--PDKHTFPFVLKACAYIFGFSEGKQVHC 175
Query: 158 YISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRD 217
I +HG+G + + N LI +Y CG L +A +VF MPE+ +VSW++MI L G
Sbjct: 176 QIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDS 235
Query: 218 AIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGM---MFLDRMSKDFGILPNIHHYG 274
A++ F MQR+ PD T VLSAC+ G + G FL R D + ++
Sbjct: 236 ALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKC-DVDVAMDVLVKN 293
Query: 275 CVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQ 334
++++ + G L A Q+ M K D W ++ H + +++ +
Sbjct: 294 SLIEMYCKCGSLRMAEQVFQGMQ-KRDLASWNAMILGFATHGRAEEAMNFFDRMVDKREN 352
Query: 335 ESGDYVLLLNLYSSVGDWEKVKELREFMN 363
+ V + L + V + R++ +
Sbjct: 353 VRPNSVTFVGLLIACNHRGFVNKGRQYFD 381
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 379 bits (974), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/505 (37%), Positives = 298/505 (59%), Gaps = 3/505 (0%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
++ YS P + F +M + N F S IK G Q+H ++ G
Sbjct: 132 LISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCG 191
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
+ + + + L+DLY+ + +A +FD + R+ V+WN LI+ + R T AL LF
Sbjct: 192 FDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQ 251
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180
+ R+ G +P + + AC+ G LE G+ +H Y+ + G N+L+ MY+K
Sbjct: 252 GMLRD--GFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAK 309
Query: 181 CGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240
GS+ A ++F + ++DVVSW+++++ A +G G++A+ F M+R G+ P++ +F V
Sbjct: 310 SGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSV 369
Query: 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKP 300
L+ACSH GL+DEG + + M KD GI+P HY VVDLLGRAG L++A + I M ++P
Sbjct: 370 LTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEP 428
Query: 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELRE 360
+ IW+ LL ACR+HK+ LG EH+ EL + G +V+L N+Y+S G W +R+
Sbjct: 429 TAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRK 488
Query: 361 FMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITS 420
M E G++ P CS + ++ +H FV +D HP+ EI + +E+ ++K GYV + +
Sbjct: 489 KMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSH 548
Query: 421 ELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYN 480
+ ++ +E+ L YHSEK+A+AF +L TPPG+TI + KN+R+C DCH K+ S V
Sbjct: 549 VIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVG 608
Query: 481 REVIIRDRLRFHHFREGRCSCNDYW 505
RE+I+RD RFHHF++G CSC DYW
Sbjct: 609 REIIVRDTNRFHHFKDGNCSCKDYW 633
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 146/290 (50%), Gaps = 4/290 (1%)
Query: 26 IPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEAC 85
IP + + +K C F L+ G +HA +L+ ++ D + TL+++Y+ EA
Sbjct: 56 IPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEAR 115
Query: 86 KLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAH 145
K+F+++PQRD V W LIS Y ++ R DAL F+ + R G P++ T V++A A
Sbjct: 116 KVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLR--FGYSPNEFTLSSVIKAAAA 173
Query: 146 LGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAM 205
G ++H + + G+ S +++ ++L+ +Y++ G + A VF + ++ VSW+A+
Sbjct: 174 ERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNAL 233
Query: 206 ISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFG 265
I+G A A+E F M R G P ++ + ACS G +++G M K
Sbjct: 234 IAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGE 293
Query: 266 ILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIH 315
L ++D+ ++G + A ++ + K D W +LL A H
Sbjct: 294 KLVAFAG-NTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWNSLLTAYAQH 341
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 94/193 (48%), Gaps = 15/193 (7%)
Query: 139 VLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKD 198
+L+ C L G +H +I + + + + N+L+ MY+KCGSL A +VF+ MP++D
Sbjct: 66 LLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRD 125
Query: 199 VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSH-----CGLVDEG 253
V+W+ +ISG + + DA+ F M R G P++ T + V+ A + CG G
Sbjct: 126 FVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHG 185
Query: 254 MMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACR 313
G N+H ++DL R GL+D A + ++ + D + W L+
Sbjct: 186 FCV------KCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVS-WNALIAG-- 236
Query: 314 IHKHVTLGERVIE 326
H + E+ +E
Sbjct: 237 -HARRSGTEKALE 248
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 378 bits (971), Expect = e-104, Method: Compositional matrix adjust.
Identities = 213/535 (39%), Positives = 310/535 (57%), Gaps = 38/535 (7%)
Query: 9 SSPEE--GFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQ 66
SSP+ ++ +MR R+ + F + L G + HA++L G D
Sbjct: 39 SSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPF 98
Query: 67 LMTTLMDLYST----------FEKSF---------------------EACKLFDEIPQRD 95
+ T+L+++YS+ F+ S +A KLFDE+P+R+
Sbjct: 99 VRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERN 158
Query: 96 TVAWNVLISCYIRNQRTRDALCLFDNLN---REESGCKPDDVTCLLVLQACAHLGALEFG 152
++W+ LI+ Y+ + ++AL LF + E+ +P++ T VL AC LGALE G
Sbjct: 159 VISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQG 218
Query: 153 EKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGM-PEKDVVSWSAMISGLAM 211
+ +H YI ++ + L +LI MY+KCGSL A VF + +KDV ++SAMI LAM
Sbjct: 219 KWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAM 278
Query: 212 NGHGRDAIESFGAMQRA-GVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNI 270
G + + F M + + P+ TF G+L AC H GL++EG + M ++FGI P+I
Sbjct: 279 YGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSI 338
Query: 271 HHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIE 330
HYGC+VDL GR+GL+ +A I SM ++PD IW +LL R+ + E ++ LIE
Sbjct: 339 QHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIE 398
Query: 331 LKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDV 390
L SG YVLL N+Y+ G W +VK +R M KG+ PGCS + ++GVVHEFVV D
Sbjct: 399 LDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDE 458
Query: 391 SHPRINEIYQMLDEINKQLKIAGYVAEITSELHNLGAEEKGNALSYHSEKLAIAFGVLAT 450
S IY MLDEI ++L+ AGYV + L +L ++K ALSYHSEKLAIAF ++ T
Sbjct: 459 SQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKT 518
Query: 451 PPGTTIRVAKNLRICVDCHNFAKVLSGVYNREVIIRDRLRFHHFREGRCSCNDYW 505
PGT +R+ KNLRIC DCH K++S +++RE+++RD RFHHFR+G CSC D+W
Sbjct: 519 RPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 119/311 (38%), Gaps = 78/311 (25%)
Query: 95 DTVAWNVLISCYIRN----QRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALE 150
++ WN++I + N QR N S PD T +L + + L
Sbjct: 23 ESFLWNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVS---PDFHTFPFLLPSFHNPLHLP 79
Query: 151 FGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKG----------------- 193
G++ H I G + SL+ MYS CG L A VF
Sbjct: 80 LGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYA 139
Query: 194 --------------MPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQ-----RAGVFPDD 234
MPE++V+SWS +I+G M G ++A++ F MQ A V P++
Sbjct: 140 KAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNE 199
Query: 235 QTFTGVLSACSHCGLVDEGMMF----------------------------LDRMSKDFGI 266
T + VLSAC G +++G L+R + F
Sbjct: 200 FTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNA 259
Query: 267 L---PNIHHYGCVVDLLGRAGLLDQAYQLITSM----GVKPDSTIWRTLLGACRIHKHVT 319
L ++ Y ++ L GL D+ +QL + M + P+S + +LGAC +
Sbjct: 260 LGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLIN 319
Query: 320 LGERVIEHLIE 330
G+ + +IE
Sbjct: 320 EGKSYFKMMIE 330
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 107/235 (45%), Gaps = 12/235 (5%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKR-----IPTNPFACSFAIKCCMKFCSLMGGLQIHAR 55
++ Y M +E LF +M+ + + N F S + C + +L G +HA
Sbjct: 165 LINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAY 224
Query: 56 VLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEI-PQRDTVAWNVLISCYIRNQRTRD 114
+ + ++D L T L+D+Y+ A ++F+ + ++D A++ +I C T +
Sbjct: 225 IDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDE 284
Query: 115 ALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHR-YISEHGYGSKMNLCNS 173
LF + ++ P+ VT + +L AC H G + G+ + I E G +
Sbjct: 285 CFQLFSEMTTSDN-INPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGC 343
Query: 174 LIAMYSKCGSLGMAFEVFKGMP-EKDVVSWSAMISGLAMNGHGRDAIESFGAMQR 227
++ +Y + G + A MP E DV+ W +++SG M G D GA++R
Sbjct: 344 MVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLG---DIKTCEGALKR 395
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 377 bits (969), Expect = e-103, Method: Compositional matrix adjust.
Identities = 197/507 (38%), Positives = 298/507 (58%), Gaps = 4/507 (0%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
+ + Y + P E L++KMR + + F F +K + G +HA V++ G
Sbjct: 80 LFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYG 139
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
+ + T L+ +Y F + A LF+ + +D VAWN ++ ++ + AL F+
Sbjct: 140 FGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFN 199
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180
+ + + D T + +L AC LG+LE GE+I+ + + + N+ + M+ K
Sbjct: 200 KMCAD--AVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLK 257
Query: 181 CGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240
CG+ A +F+ M +++VVSWS MI G AMNG R+A+ F MQ G+ P+ TF GV
Sbjct: 258 CGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGV 317
Query: 241 LSACSHCGLVDEGMMFLDRM--SKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGV 298
LSACSH GLV+EG + M S D + P HY C+VDLLGR+GLL++AY+ I M V
Sbjct: 318 LSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPV 377
Query: 299 KPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKEL 358
+PD+ IW LLGAC +H+ + LG++V + L+E +VLL N+Y++ G W+ V ++
Sbjct: 378 EPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKV 437
Query: 359 REFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEI 418
R M + G + S++ +G +H F D SHP+ IY+ LDEI K+++ GYV +
Sbjct: 438 RSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDT 497
Query: 419 TSELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGV 478
S H++ EEK +LS+HSEKLAIAFG++ PG IRV KNLR C DCH F+K +S +
Sbjct: 498 CSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSL 557
Query: 479 YNREVIIRDRLRFHHFREGRCSCNDYW 505
+ E+I+RD+ RFHHFR G CSC ++W
Sbjct: 558 TSTEIIMRDKNRFHHFRNGVCSCKEFW 584
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 126/259 (48%), Gaps = 4/259 (1%)
Query: 51 QIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQ 110
+IHA VLR G+ + L+T L++ A ++FDE+ + WN L Y+RNQ
Sbjct: 29 KIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQ 88
Query: 111 RTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNL 170
++L L+ + + G +PD+ T V++A + LG G +H ++ ++G+G +
Sbjct: 89 LPFESLLLYKKM--RDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIV 146
Query: 171 CNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGV 230
L+ MY K G L A +F+ M KD+V+W+A ++ G+ A+E F M V
Sbjct: 147 ATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAV 206
Query: 231 FPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAY 290
D T +LSAC G ++ G DR K+ I NI +D+ + G + A
Sbjct: 207 QFDSFTVVSMLSACGQLGSLEIGEEIYDRARKE-EIDCNIIVENARLDMHLKCGNTEAAR 265
Query: 291 QLITSMGVKPDSTIWRTLL 309
L M + + W T++
Sbjct: 266 VLFEEMKQR-NVVSWSTMI 283
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 4/161 (2%)
Query: 153 EKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMN 212
+KIH + G+ K +L L+ G + A +VF M + + W+ + G N
Sbjct: 28 KKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRN 87
Query: 213 GHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSK-DFGILPNIH 271
+++ + M+ GV PD+ T+ V+ A S G G + K FG L +
Sbjct: 88 QLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVA 147
Query: 272 HYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGAC 312
+V + + G L A L SM VK D W L C
Sbjct: 148 TE--LVMMYMKFGELSSAEFLFESMQVK-DLVAWNAFLAVC 185
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 375 bits (964), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/506 (38%), Positives = 291/506 (57%), Gaps = 2/506 (0%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
+++AY ++ P LF++MR RI + + + + LR G
Sbjct: 319 IIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKG 378
Query: 61 YQL-DSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLF 119
+ L D + ++ +Y+ A +F+ +P D ++WN +IS Y +N +A+ ++
Sbjct: 379 WFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMY 438
Query: 120 DNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYS 179
N+ EE + T + VL AC+ GAL G K+H + ++G + + SL MY
Sbjct: 439 -NIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYG 497
Query: 180 KCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTG 239
KCG L A +F +P + V W+ +I+ +GHG A+ F M GV PD TF
Sbjct: 498 KCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVT 557
Query: 240 VLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVK 299
+LSACSH GLVDEG + M D+GI P++ HYGC+VD+ GRAG L+ A + I SM ++
Sbjct: 558 LLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQ 617
Query: 300 PDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELR 359
PD++IW LL ACR+H +V LG+ EHL E++ + G +VLL N+Y+S G WE V E+R
Sbjct: 618 PDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIR 677
Query: 360 EFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEIT 419
+ KGL+ TPG S++ + V F + +HP E+Y+ L + +LK+ GYV +
Sbjct: 678 SIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHR 737
Query: 420 SELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVY 479
L ++ +EK + L HSE+LAIAF ++ATP TTIR+ KNLR+C DCH+ K +S +
Sbjct: 738 FVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKIT 797
Query: 480 NREVIIRDRLRFHHFREGRCSCNDYW 505
RE+I+RD RFHHF+ G CSC DYW
Sbjct: 798 EREIIVRDSNRFHHFKNGVCSCGDYW 823
Score = 132 bits (332), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 165/351 (47%), Gaps = 14/351 (3%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M+ Y S + +E L +R + + C + G+ IH+ ++ G
Sbjct: 222 MISGYCQSGNAKEALTLSNGLR----AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHG 277
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
+ + + L+DLY+ F + + K+FD + RD ++WN +I Y N++ A+ LF
Sbjct: 278 LESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQ 337
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYG-SKMNLCNSLIAMYS 179
+ S +PD +T + + + LG + + + G+ + + N+++ MY+
Sbjct: 338 EMRL--SRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYA 395
Query: 180 KCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQ-TFT 238
K G + A VF +P DV+SW+ +ISG A NG +AIE + M+ G +Q T+
Sbjct: 396 KLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWV 455
Query: 239 GVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGV 298
VL ACS G + +GM R+ K+ G+ ++ + D+ G+ G L+ A L +
Sbjct: 456 SVLPACSQAGALRQGMKLHGRLLKN-GLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP- 513
Query: 299 KPDSTIWRTLLGACRIHKHVTLGERVIEHLIE-LKAQESGDYVLLLNLYSS 348
+ +S W TL+ H H GE+ + E L D++ + L S+
Sbjct: 514 RVNSVPWNTLIACHGFHGH---GEKAVMLFKEMLDEGVKPDHITFVTLLSA 561
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 129/270 (47%), Gaps = 8/270 (2%)
Query: 41 MKFC-SLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAW 99
+K C +++ G +IH L+ G+ D + +L+ LYS ++ A LFDE+P RD +W
Sbjct: 160 LKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSW 219
Query: 100 NVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYI 159
N +IS Y ++ ++AL L + L D VT + +L AC G G IH Y
Sbjct: 220 NAMISGYCQSGNAKEALTLSNGLR------AMDSVTVVSLLSACTEAGDFNRGVTIHSYS 273
Query: 160 SEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAI 219
+HG S++ + N LI +Y++ G L +VF M +D++SW+++I +N AI
Sbjct: 274 IKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAI 333
Query: 220 ESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDL 279
F M+ + + PD T + S S G + + L +I VV +
Sbjct: 334 SLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVM 393
Query: 280 LGRAGLLDQAYQLITSMGVKPDSTIWRTLL 309
+ GL+D A + + D W T++
Sbjct: 394 YAKLGLVDSARAVFNWLP-NTDVISWNTII 422
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 152/332 (45%), Gaps = 12/332 (3%)
Query: 37 IKCCMKFCS-LMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRD 95
+ ++C+ L +HAR++ + + L++LY A FD I RD
Sbjct: 57 VHTLFRYCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRD 116
Query: 96 TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKI 155
AWN++IS Y R + + + F +L SG PD T VL+AC + G KI
Sbjct: 117 VYAWNLMISGYGRAGNSSEVIRCF-SLFMLSSGLTPDYRTFPSVLKACR---TVIDGNKI 172
Query: 156 HRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHG 215
H + G+ + + SLI +YS+ ++G A +F MP +D+ SW+AMISG +G+
Sbjct: 173 HCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNA 232
Query: 216 RDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGC 275
++A+ ++ D T +LSAC+ G + G+ + S G+ +
Sbjct: 233 KEALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVT-IHSYSIKHGLESELFVSNK 287
Query: 276 VVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQ- 334
++DL G L ++ M V+ D W +++ A +++ + + + + Q
Sbjct: 288 LIDLYAEFGRLRDCQKVFDRMYVR-DLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQP 346
Query: 335 ESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366
+ + L ++ S +GD + ++ F KG
Sbjct: 347 DCLTLISLASILSQLGDIRACRSVQGFTLRKG 378
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 19/208 (9%)
Query: 169 NLCNS--LIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGA-M 225
N+C S L+ +Y G++ +A F + +DV +W+ MISG G+ + I F M
Sbjct: 85 NVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFM 144
Query: 226 QRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGL 285
+G+ PD +TF VL AC ++D + ++ FG + +++ ++ L R
Sbjct: 145 LSSGLTPDYRTFPSVLKACR--TVIDGNKIHC--LALKFGFMWDVYVAASLIHLYSRYKA 200
Query: 286 LDQAYQLITSMGVKPDSTIWRTLL-GACR---IHKHVTLGERVIEHLIELKAQESGDYVL 341
+ A L M V+ D W ++ G C+ + +TL L+A +S V
Sbjct: 201 VGNARILFDEMPVR-DMGSWNAMISGYCQSGNAKEALTLSN-------GLRAMDSVTVVS 252
Query: 342 LLNLYSSVGDWEKVKELREFMNEKGLQT 369
LL+ + GD+ + + + + GL++
Sbjct: 253 LLSACTEAGDFNRGVTIHSYSIKHGLES 280
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust.
Identities = 197/542 (36%), Positives = 305/542 (56%), Gaps = 39/542 (7%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M+ Y +E F LFE+M+ + + + C + ++ I+ ++ +
Sbjct: 183 MIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIEND 242
Query: 61 YQLDSQLMTTLMDLYS-----TFEKSF--------------------------EACKLFD 89
++D+ L+T L+ +Y+ + F +A +FD
Sbjct: 243 VRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFD 302
Query: 90 EIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGAL 149
+ ++D V W +IS Y+ + ++AL +F+ + SG KPD V+ V+ ACA+LG L
Sbjct: 303 QTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCC--SGIKPDVVSMFSVISACANLGIL 360
Query: 150 EFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGL 209
+ + +H I +G S++++ N+LI MY+KCG L +VF+ MP ++VVSWS+MI+ L
Sbjct: 361 DKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINAL 420
Query: 210 AMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN 269
+M+G DA+ F M++ V P++ TF GVL CSH GLV+EG M+ ++ I P
Sbjct: 421 SMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPK 480
Query: 270 IHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLI 329
+ HYGC+VDL GRA LL +A ++I SM V + IW +L+ ACRIH + LG+ + ++
Sbjct: 481 LEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRIL 540
Query: 330 ELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDD 389
EL+ G VL+ N+Y+ WE V+ +R M EK + G S I G HEF++ D
Sbjct: 541 ELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGD 600
Query: 390 VSHPRINEIYQMLDEINKQLKIAGYVAEITSELHNLGAEEKGNALSYHSEKLAIAFGVLA 449
H + NEIY LDE+ +LK+AGYV + S L ++ EEK + + +HSEKLA+ FG++
Sbjct: 601 KRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMN 660
Query: 450 TPPGT------TIRVAKNLRICVDCHNFAKVLSGVYNREVIIRDRLRFHHFREGRCSCND 503
IR+ KNLR+C DCH F K++S VY RE+I+RDR RFH ++ G CSC D
Sbjct: 661 EEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRD 720
Query: 504 YW 505
YW
Sbjct: 721 YW 722
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/345 (22%), Positives = 152/345 (44%), Gaps = 35/345 (10%)
Query: 2 VRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGY 61
+R S SS P ++++R + F+ +K K +L G+++H +
Sbjct: 83 LRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAFKIAT 142
Query: 62 QLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDN 121
D + T MD+Y++ + A +FDE+ RD V WN +I Y R +A LF+
Sbjct: 143 LCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEE 202
Query: 122 LNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKC 181
+ ++S PD++ ++ AC G + + I+ ++ E+ +L +L+ MY+
Sbjct: 203 M--KDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGA 260
Query: 182 GSLGMAFEVFKGMP-------------------------------EKDVVSWSAMISGLA 210
G + MA E F+ M +KD+V W+ MIS
Sbjct: 261 GCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYV 320
Query: 211 MNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNI 270
+ + ++A+ F M +G+ PD + V+SAC++ G++D+ + + G+ +
Sbjct: 321 ESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVN-GLESEL 379
Query: 271 HHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIH 315
++++ + G LD + M + + W +++ A +H
Sbjct: 380 SINNALINMYAKCGGLDATRDVFEKMP-RRNVVSWSSMINALSMH 423
Score = 40.8 bits (94), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 80/198 (40%), Gaps = 20/198 (10%)
Query: 175 IAMYSKCGSLGMAFEVFKGMP-EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPD 233
I Y + +G + F +P K V SA+ G+ ++G + D
Sbjct: 96 ILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHG----------VAFKIATLCD 145
Query: 234 DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLI 293
TG + + CG ++ D MS ++ + +++ R GL+D+A++L
Sbjct: 146 PFVETGFMDMYASCGRINYARNVFDEMSHR-----DVVTWNTMIERYCRFGLVDEAFKLF 200
Query: 294 TSM---GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQ-ESGDYVLLLNLYSSV 349
M V PD I ++ AC ++ + E LIE + ++ L+ +Y+
Sbjct: 201 EEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGA 260
Query: 350 GDWEKVKELREFMNEKGL 367
G + +E M+ + L
Sbjct: 261 GCMDMAREFFRKMSVRNL 278
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 373 bits (958), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/507 (37%), Positives = 300/507 (59%), Gaps = 8/507 (1%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M+ + + EE LF +M++K + N F S + ++ ++HA+V++
Sbjct: 368 MISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTAL----PVISPSEVHAQVVKTN 423
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
Y+ S + T L+D Y K EA K+F I +D VAW+ +++ Y + T A+ +F
Sbjct: 424 YERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFG 483
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGA-LEFGEKIHRYISEHGYGSKMNLCNSLIAMYS 179
L + G KP++ T +L CA A + G++ H + + S + + ++L+ MY+
Sbjct: 484 ELTK--GGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYA 541
Query: 180 KCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTG 239
K G++ A EVFK EKD+VSW++MISG A +G A++ F M++ V D TF G
Sbjct: 542 KKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIG 601
Query: 240 VLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVK 299
V +AC+H GLV+EG + D M +D I P H C+VDL RAG L++A ++I +M
Sbjct: 602 VFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNP 661
Query: 300 PDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELR 359
STIWRT+L ACR+HK LG E +I +K ++S YVLL N+Y+ GDW++ ++R
Sbjct: 662 AGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVR 721
Query: 360 EFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEIT 419
+ MNE+ ++ PG S I +K + F+ D SHP ++IY L++++ +LK GY + +
Sbjct: 722 KLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTS 781
Query: 420 SELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVY 479
L ++ E K L+ HSE+LAIAFG++ATP G+ + + KNLR+C DCH K+++ +
Sbjct: 782 YVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIE 841
Query: 480 NREVIIRDRLRFHHF-REGRCSCNDYW 505
RE+++RD RFHHF +G CSC D+W
Sbjct: 842 EREIVVRDSNRFHHFSSDGVCSCGDFW 868
Score = 122 bits (306), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 156/343 (45%), Gaps = 18/343 (5%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M+ Y+ + E +F MR + + + + IK C L Q+H V++ G
Sbjct: 266 MISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYG 325
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIP-QRDTVAWNVLISCYIRNQRTRDALCLF 119
+ D + T LM YS +A +LF EI + V+W +IS +++N +A+ LF
Sbjct: 326 FLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLF 385
Query: 120 DNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYS 179
+ R+ G +P++ T ++L A + E +H + + Y + +L+ Y
Sbjct: 386 SEMKRK--GVRPNEFTYSVILTALPVISPSE----VHAQVVKTNYERSSTVGTALLDAYV 439
Query: 180 KCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTG 239
K G + A +VF G+ +KD+V+WSAM++G A G AI+ FG + + G+ P++ TF+
Sbjct: 440 KLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSS 499
Query: 240 VLSACSHCGL-VDEGMMFLDRMSKDFGILPNIHHYGCVVDLL----GRAGLLDQAYQLIT 294
+L+ C+ + +G F F I + CV L + G ++ A ++
Sbjct: 500 ILNVCAATNASMGQGKQF-----HGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFK 554
Query: 295 SMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESG 337
K D W +++ H V + + + K + G
Sbjct: 555 RQREK-DLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDG 596
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/368 (25%), Positives = 167/368 (45%), Gaps = 39/368 (10%)
Query: 34 SFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ 93
S +K C + G Q+H + ++ G+ D + T+L+D Y + K+FDE+ +
Sbjct: 97 SSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKE 156
Query: 94 RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGE 153
R+ V W LIS Y RN + L LF + E G +P+ T L A G G
Sbjct: 157 RNVVTWTTLISGYARNSMNDEVLTLFMRMQNE--GTQPNSFTFAAALGVLAEEGVGGRGL 214
Query: 154 KIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNG 213
++H + ++G + + NSLI +Y KCG++ A +F K VV+W++MISG A NG
Sbjct: 215 QVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANG 274
Query: 214 HGRDAIESFGAMQRAGVFPDDQTFTGVLSACS-----------HCGLVDEGMMF------ 256
+A+ F +M+ V + +F V+ C+ HC +V G +F
Sbjct: 275 LDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRT 334
Query: 257 ------------LD--RMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM---GVK 299
LD R+ K+ G + N+ + ++ + ++A L + M GV+
Sbjct: 335 ALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVR 394
Query: 300 PDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELR 359
P+ + +L A + + +V++ E + S LL+ Y +G E+ ++
Sbjct: 395 PNEFTYSVILTALPVISPSEVHAQVVKTNYE---RSSTVGTALLDAYVKLGKVEEAAKVF 451
Query: 360 EFMNEKGL 367
+++K +
Sbjct: 452 SGIDDKDI 459
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 109/228 (47%), Gaps = 4/228 (1%)
Query: 82 FEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQ 141
+ A LFD+ P RD ++ L+ + R+ RT++A LF N++R G + D VL+
Sbjct: 44 YNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHR--LGMEMDCSIFSSVLK 101
Query: 142 ACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVS 201
A L FG ++H + G+ +++ SL+ Y K + +VF M E++VV+
Sbjct: 102 VSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVT 161
Query: 202 WSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMS 261
W+ +ISG A N + + F MQ G P+ TF L + G+ G+ +
Sbjct: 162 WTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVV 221
Query: 262 KDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLL 309
K+ G+ I +++L + G + +A L VK T W +++
Sbjct: 222 KN-GLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVT-WNSMI 267
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 372 bits (955), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/506 (38%), Positives = 296/506 (58%), Gaps = 3/506 (0%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
++ ++ S+ P +M+ + + F + C K SL G ++H ++R+
Sbjct: 467 LIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNW 526
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
+ D + +++ LY + LFD + + V+WN +I+ Y++N AL +F
Sbjct: 527 LERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFR 586
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180
+ G + ++ + V AC+ L +L G + H Y +H + SLI MY+K
Sbjct: 587 QMVL--YGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAK 644
Query: 181 CGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240
GS+ + +VF G+ EK SW+AMI G ++G ++AI+ F MQR G PDD TF GV
Sbjct: 645 NGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGV 704
Query: 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITS-MGVK 299
L+AC+H GL+ EG+ +LD+M FG+ PN+ HY CV+D+LGRAG LD+A +++ M +
Sbjct: 705 LTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEE 764
Query: 300 PDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELR 359
D IW++LL +CRIH+++ +GE+V L EL+ ++ +YVLL NLY+ +G WE V+++R
Sbjct: 765 ADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVR 824
Query: 360 EFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEIT 419
+ MNE L+ GCS I L V FVV + EI + + ++ GY +
Sbjct: 825 QRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTM 884
Query: 420 SELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVY 479
S H+L EEK L HSEKLA+ +G++ T GTTIRV KNLRICVDCHN AK++S V
Sbjct: 885 SVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVM 944
Query: 480 NREVIIRDRLRFHHFREGRCSCNDYW 505
RE+++RD RFHHF+ G CSC DYW
Sbjct: 945 EREIVVRDNKRFHHFKNGVCSCGDYW 970
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 102/438 (23%), Positives = 181/438 (41%), Gaps = 72/438 (16%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRI----------------------------PTNPFA 32
++ Y+M SP++ ++F+ +R K + T+
Sbjct: 126 IITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLP 185
Query: 33 CSFAIKCCMKFCSLMG----GLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLF 88
F C +K C+ M GL +H V++ G D + L+ Y T +A +LF
Sbjct: 186 DHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLF 245
Query: 89 DEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNRE--ESGCKPDDVTCLLVLQACAHL 146
D +P+R+ V+WN +I + N + ++ L + E + PD T + VL CA
Sbjct: 246 DIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCARE 305
Query: 147 GALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMI 206
+ G+ +H + + ++ L N+L+ MYSKCG + A +FK K+VVSW+ M+
Sbjct: 306 REIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMV 365
Query: 207 SGLAMNGHGRDAIESFGAMQRAG--VFPDDQTFTGVLSACS-----------HCGLVDEG 253
G + G + M G V D+ T + C HC + +
Sbjct: 366 GGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQE 425
Query: 254 MMFLDRMSKDF------------------GILP-NIHHYGCVVDLLGRAG----LLDQAY 290
++ + ++ F GI ++ + ++ ++ LD
Sbjct: 426 FVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHL 485
Query: 291 QLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIE-LKAQESGDYVLLLNLYSSV 349
Q+ S G+ PDS +LL AC K + LG+ V +I ++ Y+ +L+LY
Sbjct: 486 QMKIS-GLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHC 544
Query: 350 GDWEKVKELREFMNEKGL 367
G+ V+ L + M +K L
Sbjct: 545 GELCTVQALFDAMEDKSL 562
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 117/257 (45%), Gaps = 17/257 (6%)
Query: 64 DSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLN 123
D L T ++ +Y+ ++ +FD + ++ WN +IS Y RN+ + L F +
Sbjct: 119 DDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEM- 177
Query: 124 REESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGS 183
+ PD T V++ACA + + G +H + + G + + N+L++ Y G
Sbjct: 178 ISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGF 237
Query: 184 LGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRA---GVF-PDDQTFTG 239
+ A ++F MPE+++VSW++MI + NG ++ G M G F PD T
Sbjct: 238 VTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVT 297
Query: 240 VLSACSH-----CGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLIT 294
VL C+ G G R+ K+ +L N ++D+ + G + A Q+I
Sbjct: 298 VLPVCAREREIGLGKGVHGWAVKLRLDKEL-VLNN-----ALMDMYSKCGCITNA-QMIF 350
Query: 295 SMGVKPDSTIWRTLLGA 311
M + W T++G
Sbjct: 351 KMNNNKNVVSWNTMVGG 367
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 72/309 (23%), Positives = 128/309 (41%), Gaps = 56/309 (18%)
Query: 138 LVLQACAHLGALEFGEKIHRYISEHGYGSKMN---LCNSLIAMYSKCGSLGMAFEVFKGM 194
L+LQA +E G KIH+ +S G N LC +I MY+ CGS + VF +
Sbjct: 89 LLLQASGKRKDIEMGRKIHQLVS--GSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDAL 146
Query: 195 PEKDVVSWSAMISGLAMNGHGRDAIESFGAM-QRAGVFPDDQTFTGVLSACS-------- 245
K++ W+A+IS + N + +E+F M + PD T+ V+ AC+
Sbjct: 147 RSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIG 206
Query: 246 ---HCGLVDEGMM-----------------FLDRMSKDFGILP--NIHHYGCVVDLLGRA 283
H +V G++ F+ + F I+P N+ + ++ +
Sbjct: 207 LAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDN 266
Query: 284 GLLDQAYQLITSM-------GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQES 336
G ++++ L+ M PD T+L C + + LG+ V H +K +
Sbjct: 267 GFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGV--HGWAVKLRLD 324
Query: 337 GDYVL---LLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHP 393
+ VL L+++YS G + + + N K + + +V F + +H
Sbjct: 325 KELVLNNALMDMYSKCGCITNAQMIFKMNNNK--------NVVSWNTMVGGFSAEGDTHG 376
Query: 394 RINEIYQML 402
+ + QML
Sbjct: 377 TFDVLRQML 385
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 372 bits (955), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/449 (42%), Positives = 269/449 (59%), Gaps = 9/449 (2%)
Query: 64 DSQLMTTLMDLYS--TFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDN 121
D+ M +L+ S T E +F ++ ++ V+WNV+I Y++N +A+ L+
Sbjct: 240 DAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSR 299
Query: 122 LNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKC 181
+ E G +PD V+ VL AC AL G+KIH YI + L N+LI MY+KC
Sbjct: 300 M--EADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKC 357
Query: 182 GSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVL 241
G L A +VF+ M +DVVSW+AMIS +G G DA+ F +Q +G+ PD F L
Sbjct: 358 GCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTL 417
Query: 242 SACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPD 301
+ACSH GL++EG M+ + I P + H C+VDLLGRAG + +AY+ I M ++P+
Sbjct: 418 AACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPN 477
Query: 302 STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREF 361
+W LLGACR+H +G + L +L ++SG YVLL N+Y+ G WE+V +R
Sbjct: 478 ERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNI 537
Query: 362 MNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITSE 421
M KGL+ PG S + + ++H F+V D SHP+ +EIY+ LD + K++K GYV + S
Sbjct: 538 MKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESA 597
Query: 422 LHNLGAEEKGNALSYHSEKLAIAFGVLATP-----PGTTIRVAKNLRICVDCHNFAKVLS 476
LH++ E+K L+ HSEKLAI F ++ T TIR+ KNLRIC DCH AK++S
Sbjct: 598 LHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLIS 657
Query: 477 GVYNREVIIRDRLRFHHFREGRCSCNDYW 505
+ +RE+IIRD RFH FR G CSC DYW
Sbjct: 658 QITSREIIIRDTNRFHVFRFGVCSCGDYW 686
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/337 (28%), Positives = 168/337 (49%), Gaps = 16/337 (4%)
Query: 52 IHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQR 111
+H+R++ + + +S L LM Y++ + A K+FDEIP+R+ + NV+I Y+ N
Sbjct: 61 VHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGF 120
Query: 112 TRDALCLFDNLNREESGC--KPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMN 169
+ + +F + GC +PD T VL+AC+ G + G KIH ++ G S +
Sbjct: 121 YGEGVKVFGTM----CGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLF 176
Query: 170 LCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAG 229
+ N L++MY KCG L A V M +DVVSW++++ G A N DA+E M+
Sbjct: 177 VGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVK 236
Query: 230 VFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQA 289
+ D T +L A S+ E +M++ M G ++ + ++ + + + +A
Sbjct: 237 ISHDAGTMASLLPAVSNT--TTENVMYVKDMFFKMG-KKSLVSWNVMIGVYMKNAMPVEA 293
Query: 290 YQLITSM---GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYV--LLLN 344
+L + M G +PD+ ++L AC ++LG++ I IE K + L++
Sbjct: 294 VELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKK-IHGYIERKKLIPNLLLENALID 352
Query: 345 LYSSVGDWEKVKELREFMNEKGLQT-TPGCSTIGLKG 380
+Y+ G EK +++ E M + + + T S G G
Sbjct: 353 MYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSG 389
Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 95/208 (45%), Gaps = 4/208 (1%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M+ Y ++ P E L+ +M + + + + C +L G +IH + R
Sbjct: 280 MIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKK 339
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
+ L L+D+Y+ +A +F+ + RD V+W +IS Y + R DA+ LF
Sbjct: 340 LIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFS 399
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEH-GYGSKMNLCNSLIAMYS 179
L ++SG PD + + L AC+H G LE G + +++H ++ ++ +
Sbjct: 400 KL--QDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLG 457
Query: 180 KCGSLGMAFEVFKGMP-EKDVVSWSAMI 206
+ G + A+ + M E + W A++
Sbjct: 458 RAGKVKEAYRFIQDMSMEPNERVWGALL 485
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 69/313 (22%), Positives = 128/313 (40%), Gaps = 41/313 (13%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M+R+Y + EG +F M + + + +K C +++ G +IH + G
Sbjct: 111 MIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVG 170
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
+ L+ +Y EA + DE+ +RD V+WN L+ Y +NQR DA
Sbjct: 171 LSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDA----- 225
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180
L+ C + +++ H G+ SL+ S
Sbjct: 226 -------------------LEVCREMESVKIS---------HDAGTMA----SLLPAVSN 253
Query: 181 CGSLGMAF--EVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFT 238
+ + + ++F M +K +VSW+ MI N +A+E + M+ G PD + T
Sbjct: 254 TTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSIT 313
Query: 239 GVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGV 298
VL AC + G + + ++PN+ ++D+ + G L++A + +M
Sbjct: 314 SVLPACGDTSALSLGKKIHGYIERK-KLIPNLLLENALIDMYAKCGCLEKARDVFENMKS 372
Query: 299 KPDSTIWRTLLGA 311
+ D W ++ A
Sbjct: 373 R-DVVSWTAMISA 384
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust.
Identities = 198/507 (39%), Positives = 298/507 (58%), Gaps = 4/507 (0%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M+ YS + E +F +M + N F + + C++ L G QIH +++
Sbjct: 124 MISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWN 183
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
Y + ++L+D+Y+ + EA ++F+ +P+RD V+ +I+ Y + +AL +F
Sbjct: 184 YDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFH 243
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180
L+ E G P+ VT +L A + L L+ G++ H ++ L NSLI MYSK
Sbjct: 244 RLHSE--GMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSK 301
Query: 181 CGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQ-RAGVFPDDQTFTG 239
CG+L A +F MPE+ +SW+AM+ G + +G GR+ +E F M+ V PD T
Sbjct: 302 CGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLA 361
Query: 240 VLSACSHCGLVDEGMMFLDRM-SKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGV 298
VLS CSH + D G+ D M + ++G P HYGC+VD+LGRAG +D+A++ I M
Sbjct: 362 VLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPS 421
Query: 299 KPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKEL 358
KP + + +LLGACR+H V +GE V LIE++ + +G+YV+L NLY+S G W V +
Sbjct: 422 KPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNV 481
Query: 359 REFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEI 418
R M +K + PG S I + +H F +D +HPR E+ + EI+ ++K AGYV ++
Sbjct: 482 RAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDL 541
Query: 419 TSELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGV 478
+ L+++ E+K L HSEKLA+ FG++AT G IRV KNLRICVDCHNFAK+ S V
Sbjct: 542 SCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKV 601
Query: 479 YNREVIIRDRLRFHHFREGRCSCNDYW 505
+ REV +RD+ RFH +G CSC DYW
Sbjct: 602 FEREVSLRDKNRFHQIVDGICSCGDYW 628
Score = 132 bits (331), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 170/345 (49%), Gaps = 36/345 (10%)
Query: 11 PEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTT 70
PE GF+ ++ + + C+ +L G ++HA +++ Y + L T
Sbjct: 48 PEMGFHGYDAL---------------LNACLDKRALRDGQRVHAHMIKTRYLPATYLRTR 92
Query: 71 LMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCK 130
L+ Y + +A K+ DE+P+++ V+W +IS Y + + +AL +F + R + K
Sbjct: 93 LLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDG--K 150
Query: 131 PDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEV 190
P++ T VL +C L G++IH I + Y S + + +SL+ MY+K G + A E+
Sbjct: 151 PNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREI 210
Query: 191 FKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLV 250
F+ +PE+DVVS +A+I+G A G +A+E F + G+ P+ T+ +L+A S L+
Sbjct: 211 FECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALL 270
Query: 251 DEGMM----FLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTI-- 304
D G L R + +L N ++D+ + G L A +L +M P+ T
Sbjct: 271 DHGKQAHCHVLRRELPFYAVLQN-----SLIDMYSKCGNLSYARRLFDNM---PERTAIS 322
Query: 305 WRTLLGACRIHKHVTLGERVIE--HLIELKAQESGDYVLLLNLYS 347
W +L H LG V+E L+ + + D V LL + S
Sbjct: 323 WNAMLVGYSKH---GLGREVLELFRLMRDEKRVKPDAVTLLAVLS 364
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 117/264 (44%), Gaps = 40/264 (15%)
Query: 139 VLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKD 198
+L AC AL G+++H ++ + Y L L+ Y KC L A +V MPEK+
Sbjct: 58 LLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKN 117
Query: 199 VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSAC---SHCGLVDE--- 252
VVSW+AMIS + GH +A+ F M R+ P++ TF VL++C S GL +
Sbjct: 118 VVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHG 177
Query: 253 -------------GMMFLDRMSKD---------FGILPNIHHYGCVVDLLGRA--GLLDQ 288
G LD +K F LP C + G A GL ++
Sbjct: 178 LIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEE 237
Query: 289 AYQL---ITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLN- 344
A ++ + S G+ P+ + +LL A + G++ H++ +E Y +L N
Sbjct: 238 ALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLR---RELPFYAVLQNS 294
Query: 345 ---LYSSVGDWEKVKELREFMNEK 365
+YS G+ + L + M E+
Sbjct: 295 LIDMYSKCGNLSYARRLFDNMPER 318
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust.
Identities = 196/536 (36%), Positives = 300/536 (55%), Gaps = 32/536 (5%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M Y E +F M + + + AI C + +++ G H VLR+G
Sbjct: 308 MASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNG 367
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEI----------------------------- 91
++ + L+D+Y + A ++FD +
Sbjct: 368 FESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFE 427
Query: 92 --PQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGAL 149
P+++ V+WN +IS ++ +A+ +F ++ +E G D VT + + AC HLGAL
Sbjct: 428 TMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQE-GVNADGVTMMSIASACGHLGAL 486
Query: 150 EFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGL 209
+ + I+ YI ++G + L +L+ M+S+CG A +F + +DV +W+A I +
Sbjct: 487 DLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAM 546
Query: 210 AMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN 269
AM G+ AIE F M G+ PD F G L+ACSH GLV +G M K G+ P
Sbjct: 547 AMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPE 606
Query: 270 IHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLI 329
HYGC+VDLLGRAGLL++A QLI M ++P+ IW +LL ACR+ +V + E +
Sbjct: 607 DVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQ 666
Query: 330 ELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDD 389
L + +G YVLL N+Y+S G W + ++R M EKGL+ PG S+I ++G HEF D
Sbjct: 667 VLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGD 726
Query: 390 VSHPRINEIYQMLDEINKQLKIAGYVAEITSELHNLGAEEKGNALSYHSEKLAIAFGVLA 449
SHP + I MLDE++++ G+V ++++ L ++ +EK LS HSEKLA+A+G+++
Sbjct: 727 ESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLIS 786
Query: 450 TPPGTTIRVAKNLRICVDCHNFAKVLSGVYNREVIIRDRLRFHHFREGRCSCNDYW 505
+ GTTIR+ KNLR+C DCH+FAK S VYNRE+I+RD RFH+ R+G+CSC D+W
Sbjct: 787 SNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 110/431 (25%), Positives = 185/431 (42%), Gaps = 72/431 (16%)
Query: 1 MVRAYSMSSSPEEGFYLFEKM-RQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRD 59
M+ Y+ ++ LF +M R + + N I C K L G +++A +
Sbjct: 206 MICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNS 265
Query: 60 GYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLF 119
G +++ +++ L+D+Y A +LFDE + N + S Y+R TR+AL +F
Sbjct: 266 GIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVF 325
Query: 120 DNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYS 179
+ + +SG +PD ++ L + +C+ L + +G+ H Y+ +G+ S N+CN+LI MY
Sbjct: 326 NLM--MDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYM 383
Query: 180 KC-------------------------------GSLGMAFEVFKGMPEKDVVSWSAMISG 208
KC G + A+E F+ MPEK++VSW+ +ISG
Sbjct: 384 KCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISG 443
Query: 209 LAMNGHGRDAIESFGAMQ-RAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGIL 267
L +AIE F +MQ + GV D T + SAC H G +D + K+ GI
Sbjct: 444 LVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKN-GIQ 502
Query: 268 PNIHHYGCVVDLLGRAGLLDQAYQLITSM------------------------------- 296
++ +VD+ R G + A + S+
Sbjct: 503 LDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDM 562
Query: 297 ---GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGD--YVLLLNLYSSVGD 351
G+KPD + L AC V G+ + +++L D Y +++L G
Sbjct: 563 IEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGL 622
Query: 352 WEKVKELREFM 362
E+ +L E M
Sbjct: 623 LEEAVQLIEDM 633
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 104/410 (25%), Positives = 180/410 (43%), Gaps = 54/410 (13%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
++R Y+ S E LF +M I + + F + C K + G+QIH +++ G
Sbjct: 105 LIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMG 164
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
Y D + +L+ Y+ + A K+FDE+ +R+ V+W +I Y R +DA+ LF
Sbjct: 165 YAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFF 224
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180
+ R+E P+ VT + V+ ACA L LE GEK++ +I G + ++L+ MY K
Sbjct: 225 RMVRDEE-VTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMK 283
Query: 181 CGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240
C ++ +A +F ++ +AM S G R+A+ F M +GV PD +
Sbjct: 284 CNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSA 343
Query: 241 LSACSH-----------------------------------CGLVDEGMMFLDRMSKDFG 265
+S+CS C D DRMS
Sbjct: 344 ISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTV 403
Query: 266 ILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTI--WRTLLGACRIHKHVTLGER 323
+ N G V + G +D A++ +M P+ I W T++ +L E
Sbjct: 404 VTWNSIVAGYVEN-----GEVDAAWETFETM---PEKNIVSWNTIISGL---VQGSLFEE 452
Query: 324 VIEHLIELKAQE--SGDYVLLLNLYSS---VGDWEKVKELREFMNEKGLQ 368
IE +++QE + D V ++++ S+ +G + K + ++ + G+Q
Sbjct: 453 AIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQ 502
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 129/276 (46%), Gaps = 11/276 (3%)
Query: 29 NPFACSFAIKCCMKFCSLMGGLQI-HARVLRDGYQLDSQLMTTLM----DLYSTFEKSFE 83
N C+ A +K C + L++ H + + G D +T L+ +L + SF
Sbjct: 27 NQSKCTKATPSSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSF- 85
Query: 84 ACKLFDEIPQRDT-VAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQA 142
A ++F+ T +N LI Y + +A+ LF L SG PD T L A
Sbjct: 86 AKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLF--LRMMNSGISPDKYTFPFGLSA 143
Query: 143 CAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSW 202
CA A G +IH I + GY + + NSL+ Y++CG L A +VF M E++VVSW
Sbjct: 144 CAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSW 203
Query: 203 SAMISGLAMNGHGRDAIESFGAMQR-AGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMS 261
++MI G A +DA++ F M R V P+ T V+SAC+ ++ G +
Sbjct: 204 TSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFI- 262
Query: 262 KDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMG 297
++ GI N +VD+ + +D A +L G
Sbjct: 263 RNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYG 298
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust.
Identities = 183/505 (36%), Positives = 289/505 (57%), Gaps = 2/505 (0%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M++ + + +E F +M+ + + + + + C ++ G QIHA ++R
Sbjct: 241 MIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTN 300
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
+Q + + L+D+Y + A +FD + Q++ V+W ++ Y + R +A+ +F
Sbjct: 301 FQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIF- 359
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180
L+ + SG PD T + ACA++ +LE G + H G + + NSL+ +Y K
Sbjct: 360 -LDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGK 418
Query: 181 CGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240
CG + + +F M +D VSW+AM+S A G + I+ F M + G+ PD T TGV
Sbjct: 419 CGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGV 478
Query: 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKP 300
+SACS GLV++G + M+ ++GI+P+I HY C++DL R+G L++A + I M P
Sbjct: 479 ISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPP 538
Query: 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELRE 360
D+ W TLL ACR ++ +G+ E LIEL Y LL ++Y+S G W+ V +LR
Sbjct: 539 DAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRR 598
Query: 361 FMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITS 420
M EK ++ PG S I KG +H F DD S P +++IY L+E+N ++ GY + +
Sbjct: 599 GMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSF 658
Query: 421 ELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYN 480
H++ K L+YHSE+LAIAFG++ P G IRV KNLR+CVDCHN K +S V
Sbjct: 659 VHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTG 718
Query: 481 REVIIRDRLRFHHFREGRCSCNDYW 505
RE+++RD +RFH F++G CSC D+W
Sbjct: 719 REILVRDAVRFHRFKDGTCSCGDFW 743
Score = 119 bits (297), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 150/315 (47%), Gaps = 42/315 (13%)
Query: 49 GLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIR 108
G QIH +V++ G++ + + L+ +Y+ +A K+F + R+TV +N L+ +
Sbjct: 158 GKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLA 217
Query: 109 NQRTRDALCLFDNLNRE------------ESGCKPDDVTCLL----------------VL 140
DAL LF + ++ ++G + + C VL
Sbjct: 218 CGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVL 277
Query: 141 QACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVV 200
AC LGA+ G++IH I + + + ++LI MY KC L A VF M +K+VV
Sbjct: 278 PACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVV 337
Query: 201 SWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRM 260
SW+AM+ G G +A++ F MQR+G+ PD T +SAC++ ++EG F +
Sbjct: 338 SWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGK- 396
Query: 261 SKDFGILPNIHHYGCV----VDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGAC---- 312
I + HY V V L G+ G +D + +L M V+ D+ W ++ A
Sbjct: 397 ----AITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVR-DAVSWTAMVSAYAQFG 451
Query: 313 RIHKHVTLGERVIEH 327
R + + L +++++H
Sbjct: 452 RAVETIQLFDKMVQH 466
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 112/264 (42%), Gaps = 64/264 (24%)
Query: 52 IHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQR----------------- 94
IH ++R ++ L ++ Y+ + S A ++FD IPQ
Sbjct: 28 IHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGL 87
Query: 95 --------------DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVL 140
D V WNVLI Y + A+ ++ + R+ S VT + +L
Sbjct: 88 ISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFS-ANLTRVTLMTML 146
Query: 141 QACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK-------------------- 180
+ + G + G++IH + + G+ S + + + L+ MY+
Sbjct: 147 KLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTV 206
Query: 181 -----------CGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAG 229
CG + A ++F+GM EKD VSW+AMI GLA NG ++AIE F M+ G
Sbjct: 207 MYNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQG 265
Query: 230 VFPDDQTFTGVLSACSHCGLVDEG 253
+ D F VL AC G ++EG
Sbjct: 266 LKMDQYPFGSVLPACGGLGAINEG 289
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 122/263 (46%), Gaps = 7/263 (2%)
Query: 30 PFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFD 89
P+ +F + +LM RV Q + L+ YS E F+
Sbjct: 37 PYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFE 96
Query: 90 EIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGAL 149
++P RD V WNVLI Y + A+ ++ + R+ S VT + +L+ + G +
Sbjct: 97 KLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFS-ANLTRVTLMTMLKLSSSNGHV 155
Query: 150 EFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGL 209
G++IH + + G+ S + + + L+ MY+ G + A +VF G+ +++ V +++++ GL
Sbjct: 156 SLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGL 215
Query: 210 AMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN 269
G DA++ F M++ D ++ ++ + GL E + M K G+ +
Sbjct: 216 LACGMIEDALQLFRGMEK-----DSVSWAAMIKGLAQNGLAKEAIECFREM-KVQGLKMD 269
Query: 270 IHHYGCVVDLLGRAGLLDQAYQL 292
+ +G V+ G G +++ Q+
Sbjct: 270 QYPFGSVLPACGGLGAINEGKQI 292
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/506 (36%), Positives = 292/506 (57%), Gaps = 3/506 (0%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
++ +YS + E + F +M+ F + + SL G Q+H + L
Sbjct: 322 VISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLAT 381
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
+ +L+D+Y+ E EA +F +PQR TV+W LIS Y++ L LF
Sbjct: 382 ADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFT 441
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180
+ S + D T VL+A A +L G+++H +I G + + L+ MY+K
Sbjct: 442 KM--RGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAK 499
Query: 181 CGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240
CGS+ A +VF+ MP+++ VSW+A+IS A NG G AI +F M +G+ PD + GV
Sbjct: 500 CGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGV 559
Query: 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKP 300
L+ACSHCG V++G + MS +GI P HY C++DLLGR G +A +L+ M +P
Sbjct: 560 LTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEP 619
Query: 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIEL-KAQESGDYVLLLNLYSSVGDWEKVKELR 359
D +W ++L ACRIHK+ +L ER E L + K +++ YV + N+Y++ G+WEKV++++
Sbjct: 620 DEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVK 679
Query: 360 EFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEIT 419
+ M E+G++ P S + + +H F +D +HP +EI + ++E+ +++ GY + +
Sbjct: 680 KAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTS 739
Query: 420 SELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVY 479
S + ++ + K +L YHSE+LA+AF +++TP G I V KNLR C DCH K++S +
Sbjct: 740 SVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIV 799
Query: 480 NREVIIRDRLRFHHFREGRCSCNDYW 505
RE+ +RD RFHHF EG CSC DYW
Sbjct: 800 KREITVRDTSRFHHFSEGVCSCGDYW 825
Score = 120 bits (300), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 145/313 (46%), Gaps = 8/313 (2%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
++ Y E +LF KMRQ + F S +K + G Q+HA + G
Sbjct: 221 LITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTG 280
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
+ D+ + ++D YS ++ E LFDE+P+ D V++NV+IS Y + + +L F
Sbjct: 281 FSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFR 340
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180
+ + G + +L A+L +L+ G ++H S +++ NSL+ MY+K
Sbjct: 341 EM--QCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAK 398
Query: 181 CGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240
C A +FK +P++ VSW+A+ISG G ++ F M+ + + D TF V
Sbjct: 399 CEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATV 458
Query: 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKP 300
L A + + G + + G L N+ +VD+ + G + A Q+ M P
Sbjct: 459 LKASASFASLLLGKQLHAFIIRS-GNLENVFSGSGLVDMYAKCGSIKDAVQVFEEM---P 514
Query: 301 D--STIWRTLLGA 311
D + W L+ A
Sbjct: 515 DRNAVSWNALISA 527
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 2/162 (1%)
Query: 84 ACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQAC 143
A LFD +P R V W +L+ Y RN +A LF + R S PD VT +L C
Sbjct: 98 ARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGC 157
Query: 144 AHLGALEFGEKIHRYISEHGYGSK--MNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVS 201
++H + + G+ + + + N L+ Y + L +A +F+ +PEKD V+
Sbjct: 158 NDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVT 217
Query: 202 WSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSA 243
++ +I+G +G ++I F M+++G P D TF+GVL A
Sbjct: 218 FNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKA 259
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 138/311 (44%), Gaps = 10/311 (3%)
Query: 5 YSMSSSPEEGFYLFEKMRQKRIPTNPFACSFA--IKCCMKFCSLMGGLQIHARVLRDGYQ 62
Y+ +S +E F LF +M + T P +F + C Q+HA ++ G+
Sbjct: 120 YARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFD 179
Query: 63 LDSQLMTT--LMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
+ L + L+ Y + AC LF+EIP++D+V +N LI+ Y ++ +++ LF
Sbjct: 180 TNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLF- 238
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180
L +SG +P D T VL+A L G+++H G+ ++ N ++ YSK
Sbjct: 239 -LKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSK 297
Query: 181 CGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240
+ +F MPE D VS++ +IS + ++ F MQ G + F +
Sbjct: 298 HDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATM 357
Query: 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYG-CVVDLLGRAGLLDQAYQLITSMGVK 299
LS ++ + G +I H G +VD+ + + ++A + S+ +
Sbjct: 358 LSIAANLSSLQMGRQL--HCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQR 415
Query: 300 PDSTIWRTLLG 310
+ W L+
Sbjct: 416 T-TVSWTALIS 425
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 123/301 (40%), Gaps = 29/301 (9%)
Query: 172 NSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAG-- 229
N++I+ + K G + A ++F MP++ VV+W+ ++ A N H +A + F M R+
Sbjct: 83 NTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSC 142
Query: 230 VFPDDQTFTGVLSACSHC---GLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLL 286
PD TFT +L C+ V + F ++ F P + ++ L
Sbjct: 143 TLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLG--FDTNPFLTVSNVLLKSYCEVRRL 200
Query: 287 DQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESG----DYVLL 342
D A L + K DS + TL+ K E + HL LK ++SG D+
Sbjct: 201 DLACVLFEEIPEK-DSVTFNTLITG--YEKDGLYTESI--HLF-LKMRQSGHQPSDFTFS 254
Query: 343 LNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVS-HPRINEIYQM 401
L + VG L +F + L + V ++D S H R+ E +
Sbjct: 255 GVLKAVVG-------LHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRML 307
Query: 402 LDEINKQLKIAGYVAEITSELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKN 461
DE+ +L Y I+S A++ +L + E + F P T + +A N
Sbjct: 308 FDEM-PELDFVSYNVVISSYSQ---ADQYEASLHFFREMQCMGFDRRNFPFATMLSIAAN 363
Query: 462 L 462
L
Sbjct: 364 L 364
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust.
Identities = 204/551 (37%), Positives = 296/551 (53%), Gaps = 47/551 (8%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIK--------------C------- 39
MV YS E+ LFEKM++++I + S AI C
Sbjct: 301 MVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSG 360
Query: 40 --------------CMKFCSLMGGLQIHARVLR-------DGYQLDSQLMTTLMDLYSTF 78
C +LM G +IH ++ +G+ ++ ++ L+D+Y+
Sbjct: 361 IKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKC 420
Query: 79 EKSFEACKLFDEIP--QRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTC 136
+K A +FD + +RD V W V+I Y ++ AL L + E+ +P+ T
Sbjct: 421 KKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTI 480
Query: 137 LLVLQACAHLGALEFGEKIHRY-ISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP 195
L ACA L AL G++IH Y + + + N LI MY+KCGS+ A VF M
Sbjct: 481 SCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMM 540
Query: 196 EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMM 255
K+ V+W+++++G M+G+G +A+ F M+R G D T VL ACSH G++D+GM
Sbjct: 541 AKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGME 600
Query: 256 FLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIH 315
+ +RM FG+ P HY C+VDLLGRAG L+ A +LI M ++P +W L CRIH
Sbjct: 601 YFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIH 660
Query: 316 KHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCST 375
V LGE E + EL + G Y LL NLY++ G W+ V +R M KG++ PGCS
Sbjct: 661 GKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSW 720
Query: 376 I-GLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITSELHNLGAEEKGNAL 434
+ G+KG F V D +HP EIYQ+L + +++K GYV E LH++ EEK + L
Sbjct: 721 VEGIKGTT-TFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLL 779
Query: 435 SYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYNREVIIRDRLRFHHF 494
HSEKLA+A+G+L TP G IR+ KNLR+C DCH +S + + ++I+RD RFHHF
Sbjct: 780 FEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHF 839
Query: 495 REGRCSCNDYW 505
+ G CSC YW
Sbjct: 840 KNGSCSCKGYW 850
Score = 139 bits (349), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 107/386 (27%), Positives = 172/386 (44%), Gaps = 13/386 (3%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
++R+Y + + YLF M + + F K C + S+ G HA L G
Sbjct: 98 LIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTG 157
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
+ + + L+ +YS +A K+FDE+ D V+WN +I Y + + + AL +F
Sbjct: 158 FISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFS 217
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180
+ E GC+PD++T + VL CA LG G+++H + M + N L+ MY+K
Sbjct: 218 RMT-NEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAK 276
Query: 181 CGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240
CG + A VF M KDVVSW+AM++G + G DA+ F MQ + D T++
Sbjct: 277 CGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAA 336
Query: 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQL-------- 292
+S + GL E + +M GI PN V+ G L ++
Sbjct: 337 ISGYAQRGLGYEALGVCRQMLSS-GIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYP 395
Query: 293 --ITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVG 350
+ G ++ + L+ K V + + L K ++ + +++ YS G
Sbjct: 396 IDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSL-SPKERDVVTWTVMIGGYSQHG 454
Query: 351 DWEKVKELREFMNEKGLQTTPGCSTI 376
D K EL M E+ QT P TI
Sbjct: 455 DANKALELLSEMFEEDCQTRPNAFTI 480
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 4/144 (2%)
Query: 168 MNLCNSLIAMYSKCGSLGMAFEVFKGMPEKD--VVSWSAMISGLAMNGHGRDAIESFGAM 225
+NL + LI+ Y G L A + + P D V W+++I NG + FG M
Sbjct: 59 LNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLM 118
Query: 226 QRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGL 285
PD+ TF V AC V G +S G + N+ +V + R
Sbjct: 119 HSLSWTPDNYTFPFVFKACGEISSVRCGES-AHALSLVTGFISNVFVGNALVAMYSRCRS 177
Query: 286 LDQAYQLITSMGVKPDSTIWRTLL 309
L A ++ M V D W +++
Sbjct: 178 LSDARKVFDEMSVW-DVVSWNSII 200
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 365 bits (938), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/509 (36%), Positives = 288/509 (56%), Gaps = 9/509 (1%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPT---NPFACSFAIKCCMKFCSLMGGLQIHARVL 57
MV Y PEE L+ M +R+P N F S A+ + G +IH ++
Sbjct: 188 MVTGYVKKDQPEEALVLYSLM--QRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIV 245
Query: 58 RDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALC 117
R G D L ++LMD+Y EA +FD+I ++D V+W +I Y ++ R R+
Sbjct: 246 RAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFS 305
Query: 118 LFDNLNREESGC-KPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIA 176
LF L C +P++ T VL ACA L E G+++H Y++ G+ +SL+
Sbjct: 306 LFSEL---VGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVD 362
Query: 177 MYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQT 236
MY+KCG++ A V G P+ D+VSW+++I G A NG +A++ F + ++G PD T
Sbjct: 363 MYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVT 422
Query: 237 FTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM 296
F VLSAC+H GLV++G+ F +++ + HY C+VDLL R+G +Q +I+ M
Sbjct: 423 FVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEM 482
Query: 297 GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVK 356
+KP +W ++LG C + ++ L E + L +++ + YV + N+Y++ G WE+
Sbjct: 483 PMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEG 542
Query: 357 ELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVA 416
++R+ M E G+ PG S +K H F+ D SHP N+I + L E+ K++K GYV
Sbjct: 543 KMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELRKKMKEEGYVP 602
Query: 417 EITSELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLS 476
+ LH++ E+K L YHSEKLA+AF +L+T GT I+V KNLR CVDCH K +S
Sbjct: 603 ATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHGAIKFIS 662
Query: 477 GVYNREVIIRDRLRFHHFREGRCSCNDYW 505
+ R++ +RD RFH F G+CSC DYW
Sbjct: 663 NITKRKITVRDSTRFHCFENGQCSCGDYW 691
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 160/357 (44%), Gaps = 36/357 (10%)
Query: 22 RQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKS 81
R K+ P + + C+ I+ C + +L G ++H + G+ + L+ +Y+
Sbjct: 79 RAKKPPASTY-CNL-IQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSL 136
Query: 82 FEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREES-------------- 127
+A K+FDE+P RD +WNV+++ Y +A LFD + ++S
Sbjct: 137 VDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKD 196
Query: 128 ----------------GCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLC 171
+P+ T + + A A + + G++IH +I G S L
Sbjct: 197 QPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLW 256
Query: 172 NSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVF 231
+SL+ MY KCG + A +F + EKDVVSW++MI + R+ F + +
Sbjct: 257 SSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCER 316
Query: 232 PDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQ 291
P++ TF GVL+AC+ + G M++ G P +VD+ + G ++ A
Sbjct: 317 PNEYTFAGVLNACADLTTEELGKQVHGYMTR-VGFDPYSFASSSLVDMYTKCGNIESAKH 375
Query: 292 LITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSS 348
++ KPD W +L+G C + + + L LK+ D+V +N+ S+
Sbjct: 376 VVDGCP-KPDLVSWTSLIGGCAQNGQPDEALKYFDLL--LKSGTKPDHVTFVNVLSA 429
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/505 (36%), Positives = 285/505 (56%), Gaps = 8/505 (1%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
++ Y+ +S + Y+F +M++ + + + C L G +H + ++ G
Sbjct: 127 LISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGG 186
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
+ ++ + + +Y +LFDE+P + + WN +IS Y +N D L L++
Sbjct: 187 LDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYE 246
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180
+ + SG PD T + VL +CAHLGA + G ++ + + +G+ + + N+ I+MY++
Sbjct: 247 QM--KSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYAR 304
Query: 181 CGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240
CG+L A VF MP K +VSW+AMI M+G G + F M + G+ PD F V
Sbjct: 305 CGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMV 364
Query: 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKP 300
LSACSH GL D+G+ M +++ + P HY C+VDLLGRAG LD+A + I SM V+P
Sbjct: 365 LSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEP 424
Query: 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELRE 360
D +W LLGAC+IHK+V + E +IE + G YVL+ N+YS + E + +R
Sbjct: 425 DGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRV 484
Query: 361 FMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITS 420
M E+ + PG S + KG VH F+ D SH + E+++MLDE+ V E+
Sbjct: 485 MMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELETS------VMELAG 538
Query: 421 ELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYN 480
+ EE + HSE+LAIAFG+L + PGT I V KNLR+C DCH F K +S + +
Sbjct: 539 NMDCDRGEEVSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVD 598
Query: 481 REVIIRDRLRFHHFREGRCSCNDYW 505
R+ ++RD RFH+F++G CSC DYW
Sbjct: 599 RQFVVRDASRFHYFKDGVCSCKDYW 623
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 180/374 (48%), Gaps = 8/374 (2%)
Query: 2 VRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGY 61
+R + S E L+ M + + F+ F +K C + G Q+H V + G
Sbjct: 25 LRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGC 84
Query: 62 QLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRD--TVAWNVLISCYIRNQRTRDALCLF 119
+ + ++T L+ +Y +A K+F+E PQ +V +N LIS Y N + DA +F
Sbjct: 85 ETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMF 144
Query: 120 DNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYS 179
+ +E+G D VT L ++ C L G +H + G S++ + NS I MY
Sbjct: 145 RRM--KETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYM 202
Query: 180 KCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTG 239
KCGS+ +F MP K +++W+A+ISG + NG D +E + M+ +GV PD T
Sbjct: 203 KCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVS 262
Query: 240 VLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVK 299
VLS+C+H G G + ++ + G +PN+ + + R G L +A + M VK
Sbjct: 263 VLSSCAHLGAKKIGHE-VGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVK 321
Query: 300 PDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGD-YVLLLNLYSSVGDWEKVKEL 358
+ W ++G +H +G + + +I+ + G +V++L+ S G +K EL
Sbjct: 322 SLVS-WTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLEL 380
Query: 359 -REFMNEKGLQTTP 371
R E L+ P
Sbjct: 381 FRAMKREYKLEPGP 394
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/345 (22%), Positives = 144/345 (41%), Gaps = 63/345 (18%)
Query: 96 TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKI 155
+ WNV + +++ L+ ++ R SG PD + +L++CA L G+++
Sbjct: 18 STPWNVRLRELAYQSLFSESISLYRSMLR--SGSSPDAFSFPFILKSCASLSLPVSGQQL 75
Query: 156 HRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVS--WSAMISGLAMNG 213
H ++++ G ++ + +LI+MY KCG + A +VF+ P+ +S ++A+ISG N
Sbjct: 76 HCHVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANS 135
Query: 214 HGRDAIESFGAMQRAGVFPDDQTFTGVLSACS---------------------------- 245
DA F M+ GV D T G++ C+
Sbjct: 136 KVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLN 195
Query: 246 -------HCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGL---LDQAYQLITS 295
CG V+ G D M + + + V+ + GL + + Y+ + S
Sbjct: 196 SFITMYMKCGSVEAGRRLFDEMP-----VKGLITWNAVISGYSQNGLAYDVLELYEQMKS 250
Query: 296 MGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYV-------LLLNLYSS 348
GV PD ++L +C LG + I H + K ES +V +++Y+
Sbjct: 251 SGVCPDPFTLVSVLSSC-----AHLGAKKIGHEVG-KLVESNGFVPNVFVSNASISMYAR 304
Query: 349 VGDWEKVKELREFMNEKGLQTTP---GCSTIGLKGVVHEFVVDDV 390
G+ K + + + M K L + GC + G + + DD+
Sbjct: 305 CGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDM 349
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 364 bits (934), Expect = e-99, Method: Compositional matrix adjust.
Identities = 198/540 (36%), Positives = 302/540 (55%), Gaps = 37/540 (6%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
++R Y++ +E ++ MR++ I F S +K C L G Q HA+ R
Sbjct: 120 VIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLR 179
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIR------------ 108
+ T++D+Y E A K+FDE+P+RD ++W LI+ Y R
Sbjct: 180 GFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFE 239
Query: 109 -------------------NQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGAL 149
N + ++AL FD + E+SG + D+VT + ACA LGA
Sbjct: 240 SLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRM--EKSGIRADEVTVAGYISACAQLGAS 297
Query: 150 EFGEKIHRYISEHGYGSKMNLC--NSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMIS 207
++ ++ + + GY ++ ++LI MYSKCG++ A VF M K+V ++S+MI
Sbjct: 298 KYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMIL 357
Query: 208 GLAMNGHGRDAIESFGAM-QRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGI 266
GLA +G ++A+ F M + + P+ TF G L ACSH GLVD+G D M + FG+
Sbjct: 358 GLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGV 417
Query: 267 LPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIE 326
P HY C+VDLLGR G L +A +LI +M V+P +W LLGACRIH + + E E
Sbjct: 418 QPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAE 477
Query: 327 HLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCS-TIGLKGVVHEF 385
HL EL+ G+Y+LL N+Y+S GDW V +R+ + EKGL+ TP S + G +H+F
Sbjct: 478 HLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKF 537
Query: 386 VVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITSELHNLGAEEKGNALSYHSEKLAIAF 445
+++HP N+I L+E+ ++L + GY +++S +++ K L H+EKLA+AF
Sbjct: 538 FPGNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAF 597
Query: 446 GVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYNREVIIRDRLRFHHFREGRCSCNDYW 505
+L T +TI + KNLR+C+DCH F ++ S V + +I+RD +RFHHFR G CSC D+W
Sbjct: 598 SLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 130/298 (43%), Gaps = 44/298 (14%)
Query: 51 QIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFE--ACKLFDEIPQRDTVAWNVLISCYIR 108
QIH VLR G ++T L+ + + A ++ + + R+ W +I Y
Sbjct: 67 QIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAVIRGYAI 126
Query: 109 NQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKM 168
+ +A+ ++ + +EE P T +L+AC + L G + H +
Sbjct: 127 EGKFDEAIAMYGCMRKEE--ITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFV 184
Query: 169 NLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVS--------------------------- 201
+ N++I MY KC S+ A +VF MPE+DV+S
Sbjct: 185 YVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTK 244
Query: 202 ----WSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFL 257
W+AM++G A N ++A+E F M+++G+ D+ T G +SAC+ G +
Sbjct: 245 DMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLG----ASKYA 300
Query: 258 DR---MSKDFGILPNIHHY--GCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLG 310
DR +++ G P+ H ++D+ + G +++A + SM K T +LG
Sbjct: 301 DRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILG 358
>sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protein At3g49710
OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1
Length = 721
Score = 364 bits (934), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 195/513 (38%), Positives = 300/513 (58%), Gaps = 10/513 (1%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M+ AY + L+++M K + F + + L+GG Q H ++++ G
Sbjct: 211 MIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAG 270
Query: 61 YQLDSQLMTTLMDLYSTF---EKSFEACKLFDEIPQRDTVAWNVLISCYIRNQR-TRDAL 116
+ +S + + L+D YS + +++ K+F EI D V WN +IS Y N+ + +A+
Sbjct: 271 FHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEELSEEAV 330
Query: 117 CLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRY-ISEHGYGSKMNLCNSLI 175
F + R G +PDD + + V AC++L + ++IH I H +++++ N+LI
Sbjct: 331 KSFRQMQR--IGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALI 388
Query: 176 AMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQ 235
++Y K G+L A VF MPE + VS++ MI G A +GHG +A+ + M +G+ P+
Sbjct: 389 SLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKI 448
Query: 236 TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITS 295
TF VLSAC+HCG VDEG + + M + F I P HY C++DLLGRAG L++A + I +
Sbjct: 449 TFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDA 508
Query: 296 MGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKV 355
M KP S W LLGACR HK++ L ER L+ ++ + YV+L N+Y+ WE++
Sbjct: 509 MPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADARKWEEM 568
Query: 356 KELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYV 415
+R+ M K ++ PGCS I +K H FV +D SHP I E+ + L+E+ K++K GYV
Sbjct: 569 ASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYV 628
Query: 416 AEITSELHNLGAEEKGNA---LSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFA 472
+ + +G+ L +HSEKLA+AFG+++T G + V KNLRIC DCHN
Sbjct: 629 MDKKWAMVKEDEAGEGDEEMRLGHHSEKLAVAFGLMSTRDGEELVVVKNLRICGDCHNAI 688
Query: 473 KVLSGVYNREVIIRDRLRFHHFREGRCSCNDYW 505
K +S V RE+I+RD LRFH F++G+CSC DYW
Sbjct: 689 KFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 120/254 (47%), Gaps = 8/254 (3%)
Query: 69 TTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESG 128
++ Y+ K A +LFDEIPQ DTV++N LIS Y + T A+ LF + + G
Sbjct: 78 NVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRK--LG 135
Query: 129 CKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAF 188
+ D T ++ AC ++ +++H + G+ S ++ N+ + YSK G L A
Sbjct: 136 FEVDGFTLSGLIAACC--DRVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAV 193
Query: 189 EVFKGMPE-KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHC 247
VF GM E +D VSW++MI + G A+ + M G D T VL+A +
Sbjct: 194 SVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSL 253
Query: 248 GLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAY--QLITSMGVKPDSTIW 305
+ G F ++ K G N H ++D + G D Y + + + PD +W
Sbjct: 254 DHLIGGRQFHGKLIKA-GFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVW 312
Query: 306 RTLLGACRIHKHVT 319
T++ +++ ++
Sbjct: 313 NTMISGYSMNEELS 326
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 79/206 (38%), Gaps = 54/206 (26%)
Query: 152 GEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLG-------------------------- 185
G+ +H + S L N + +YSKCG L
Sbjct: 27 GKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVKAYAK 86
Query: 186 -----MAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGA------MQRAGVFPDD 234
+A ++F +P+ D VS++ +ISG A DA E+F A M++ G D
Sbjct: 87 DSKIHIARQLFDEIPQPDTVSYNTLISGYA------DARETFAAMVLFKRMRKLGFEVDG 140
Query: 235 QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCV----VDLLGRAGLLDQAY 290
T +G+++AC C VD L + F + Y V V + GLL +A
Sbjct: 141 FTLSGLIAAC--CDRVD-----LIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAV 193
Query: 291 QLITSMGVKPDSTIWRTLLGACRIHK 316
+ M D W +++ A HK
Sbjct: 194 SVFYGMDELRDEVSWNSMIVAYGQHK 219
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 363 bits (933), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 190/505 (37%), Positives = 286/505 (56%), Gaps = 3/505 (0%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M+ AY + +P+E +F+KM + + + A+ C L G IH + G
Sbjct: 308 MIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELG 367
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
+ ++ +L+ +Y ++ A +F ++ R V+WN +I + +N R DAL F
Sbjct: 368 LDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFS 427
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180
+ KPD T + V+ A A L + IH + + + +L+ MY+K
Sbjct: 428 QMRSRT--VKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAK 485
Query: 181 CGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240
CG++ +A +F M E+ V +W+AMI G +G G+ A+E F MQ+ + P+ TF V
Sbjct: 486 CGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSV 545
Query: 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKP 300
+SACSH GLV+ G+ M +++ I ++ HYG +VDLLGRAG L++A+ I M VKP
Sbjct: 546 ISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKP 605
Query: 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELRE 360
++ +LGAC+IHK+V E+ E L EL + G +VLL N+Y + WEKV ++R
Sbjct: 606 AVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRV 665
Query: 361 FMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITS 420
M +GL+ TPGCS + +K VH F +HP +IY L+++ +K AGYV + T+
Sbjct: 666 SMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPD-TN 724
Query: 421 ELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYN 480
+ + + K LS HSEKLAI+FG+L T GTTI V KNLR+C DCHN K +S V
Sbjct: 725 LVLGVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTG 784
Query: 481 REVIIRDRLRFHHFREGRCSCNDYW 505
RE+++RD RFHHF+ G CSC DYW
Sbjct: 785 REIVVRDMQRFHHFKNGACSCGDYW 809
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 158/292 (54%), Gaps = 3/292 (1%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M++ ++ S ++ F +MR + + ++ +K C L G +IH +++ G
Sbjct: 106 MLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSG 165
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
+ LD MT L ++Y+ + EA K+FD +P+RD V+WN +++ Y +N R AL +
Sbjct: 166 FSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVK 225
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180
++ E KP +T + VL A + L + G++IH Y G+ S +N+ +L+ MY+K
Sbjct: 226 SMCEE--NLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAK 283
Query: 181 CGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240
CGSL A ++F GM E++VVSW++MI N + ++A+ F M GV P D + G
Sbjct: 284 CGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGA 343
Query: 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQL 292
L AC+ G ++ G F+ ++S + G+ N+ ++ + + +D A +
Sbjct: 344 LHACADLGDLERG-RFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASM 394
Score = 37.0 bits (84), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 69/357 (19%), Positives = 139/357 (38%), Gaps = 77/357 (21%)
Query: 138 LVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEK 197
L+L+ C+ L L +I + ++G + L++++ + GS+ A VF+ + K
Sbjct: 42 LLLERCSSLKELR---QILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSK 98
Query: 198 DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSAC------------- 244
V + M+ G A A++ F M+ V P FT +L C
Sbjct: 99 LNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIH 158
Query: 245 ----------------------SHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGR 282
+ C V+E DRM + ++ + +V +
Sbjct: 159 GLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPER-----DLVSWNTIVAGYSQ 213
Query: 283 AGLLDQAYQLITSM---GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDY 339
G+ A +++ SM +KP ++L A + +++G+ + + A SG
Sbjct: 214 NGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGY-----AMRSGFD 268
Query: 340 VL------LLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHP 393
L L+++Y+ G E ++L + M E+ + + ++ +V ++
Sbjct: 269 SLVNISTALVDMYAKCGSLETARQLFDGMLERNV--------VSWNSMIDAYVQNENPKE 320
Query: 394 RINEIYQMLDEINKQLKIAGYVAEITSELH---NLGAEEKGNALSYHSEKLAIAFGV 447
+ +MLDE K ++ + LH +LG E+G + KL++ G+
Sbjct: 321 AMLIFQKMLDEGVKPTDVS-----VMGALHACADLGDLERGRFI----HKLSVELGL 368
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 363 bits (931), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 195/540 (36%), Positives = 297/540 (55%), Gaps = 41/540 (7%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRD- 59
M+ Y +E + +M I + F I+ C L G Q+HA VLR
Sbjct: 257 MISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRRE 316
Query: 60 --GYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYI---------- 107
+ D+ L++ LY K EA +F+++P +D V+WN L+S Y+
Sbjct: 317 DFSFHFDNSLVS----LYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKL 372
Query: 108 ---------------------RNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHL 146
N + L LF + RE G +P D +++CA L
Sbjct: 373 IFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKRE--GFEPCDYAFSGAIKSCAVL 430
Query: 147 GALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMI 206
GA G++ H + + G+ S ++ N+LI MY+KCG + A +VF+ MP D VSW+A+I
Sbjct: 431 GAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALI 490
Query: 207 SGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGI 266
+ L +GHG +A++ + M + G+ PD T VL+ACSH GLVD+G + D M + I
Sbjct: 491 AALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRI 550
Query: 267 LPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIE 326
P HY ++DLL R+G A +I S+ KP + IW LL CR+H ++ LG +
Sbjct: 551 PPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAAD 610
Query: 327 HLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFV 386
L L + G Y+LL N++++ G WE+V +R+ M ++G++ CS I ++ VH F+
Sbjct: 611 KLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFL 670
Query: 387 VDDVSHPRINEIYQMLDEINKQLKIAGYVAEITSELHNLGAE-EKGNALSYHSEKLAIAF 445
VDD SHP +Y L ++ K+++ GYV + + LH++ ++ K + L+ HSEK+A+AF
Sbjct: 671 VDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAF 730
Query: 446 GVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYNREVIIRDRLRFHHFREGRCSCNDYW 505
G++ PPGTTIR+ KNLR C DCHNF + LS V R++I+RDR RFHHFR G CSC ++W
Sbjct: 731 GLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 107/450 (23%), Positives = 184/450 (40%), Gaps = 93/450 (20%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGL---------- 50
M+ +S ++ LF KM+ + + F F S++ GL
Sbjct: 119 MITGFSHNNDGYSAINLFCKMKHEGFKPDNFT----------FASVLAGLALVADDEKQC 168
Query: 51 -QIHARVLRDGYQLDSQLMTTLMDLYSTFEKS----FEACKLFDEIPQRDTVAWNVLISC 105
Q HA L+ G + + L+ +YS S A K+FDEI ++D +W +++
Sbjct: 169 VQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTG 228
Query: 106 YIRNQRTRDALCLFDNLNRE------------------------------ESGCKPDDVT 135
Y++N L + ++ SG + D+ T
Sbjct: 229 YVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFT 288
Query: 136 CLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP 195
V++ACA G L+ G+++H Y+ S + NSL+++Y KCG A +F+ MP
Sbjct: 289 YPSVIRACATAGLLQLGKQVHAYVLRREDFS-FHFDNSLVSLYYKCGKFDEARAIFEKMP 347
Query: 196 EKDVVSWSA-------------------------------MISGLAMNGHGRDAIESFGA 224
KD+VSW+A MISGLA NG G + ++ F
Sbjct: 348 AKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSC 407
Query: 225 MQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAG 284
M+R G P D F+G + +C+ G G + ++ K G ++ ++ + + G
Sbjct: 408 MKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLK-IGFDSSLSAGNALITMYAKCG 466
Query: 285 LLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLN 344
++++A Q+ +M DS W L+ A H H V E + LK D + LL
Sbjct: 467 VVEEARQVFRTMPCL-DSVSWNALIAALGQHGHGAEAVDVYEEM--LKKGIRPDRITLLT 523
Query: 345 LYSSVGDWEKVKELREFMN--EKGLQTTPG 372
+ ++ V + R++ + E + PG
Sbjct: 524 VLTACSHAGLVDQGRKYFDSMETVYRIPPG 553
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 94/416 (22%), Positives = 167/416 (40%), Gaps = 82/416 (19%)
Query: 25 RIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEA 84
R N +A + + ++ SL +H ++ G+Q + ++ L+D+Y + A
Sbjct: 9 RAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYA 68
Query: 85 CKLFDEIPQ---------------------------------RDTVAWNVLISCYIRNQR 111
+LFDEI + RDTV +N +I+ + N
Sbjct: 69 RQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNND 128
Query: 112 TRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFG-EKIHRYISEHGYGSKMNL 170
A+ LF + E G KPD+ T VL A + E + H + G G ++
Sbjct: 129 GYSAINLFCKMKHE--GFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSV 186
Query: 171 CNSLIAMYSKCGS----LGMAFEVFKGMPEKDVVSWSAMISGLAMNGH------------ 214
N+L+++YSKC S L A +VF + EKD SW+ M++G NG+
Sbjct: 187 SNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMD 246
Query: 215 --------------------GRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGM 254
++A+E M +G+ D+ T+ V+ AC+ GL+ G
Sbjct: 247 DNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGK 306
Query: 255 MFLDRM--SKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGAC 312
+ +DF + H +V L + G D+A + M K D W LL
Sbjct: 307 QVHAYVLRREDF----SFHFDNSLVSLYYKCGKFDEARAIFEKMPAK-DLVSWNALLSGY 361
Query: 313 RIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQ 368
H+ + + + E+K + ++++++ + G E+ +L M +G +
Sbjct: 362 VSSGHIGEAKLIFK---EMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFE 414
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 108/244 (44%), Gaps = 42/244 (17%)
Query: 172 NSLIAMYSKCGSLGMAFEVFKGMP--EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAG 229
++++ Y G + +A VF+ P +D V ++AMI+G + N G AI F M+ G
Sbjct: 84 TTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEG 143
Query: 230 VFPDDQTFTGVLSACS------------HCGLVDEGMMFLDRMSKDFGILPNIHHYGCVV 277
PD+ TF VL+ + H + G ++ +S L +++ C
Sbjct: 144 FKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSN---ALVSVYS-KCA- 198
Query: 278 DLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHL---IELKAQ 334
LL A ++ + ++ D W T++ + + LGE ++E + ++L A
Sbjct: 199 ---SSPSLLHSARKVFDEI-LEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVA- 253
Query: 335 ESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQ----TTP----GCSTIGLKGV---VH 383
Y +++ Y + G +++ E+ M G++ T P C+T GL + VH
Sbjct: 254 ----YNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVH 309
Query: 384 EFVV 387
+V+
Sbjct: 310 AYVL 313
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 362 bits (930), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 184/498 (36%), Positives = 278/498 (55%), Gaps = 7/498 (1%)
Query: 13 EGFYLFEKM-RQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTL 71
E LF +M Q + N F S A K C G Q+ + + G +S + ++
Sbjct: 355 EAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSV 414
Query: 72 MDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKP 131
+ ++ ++ +A + F+ + +++ V++N + RN A L + E G
Sbjct: 415 ISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSA 474
Query: 132 DDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVF 191
T +L A++G++ GE+IH + + G +CN+LI+MYSKCGS+ A VF
Sbjct: 475 --FTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVF 532
Query: 192 KGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVD 251
M ++V+SW++MI+G A +G +E+F M GV P++ T+ +LSACSH GLV
Sbjct: 533 NFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVS 592
Query: 252 EGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGA 311
EG + M +D I P + HY C+VDLL RAGLL A++ I +M + D +WRT LGA
Sbjct: 593 EGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGA 652
Query: 312 CRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTP 371
CR+H + LG+ ++EL E Y+ L N+Y+ G WE+ E+R M E+ L
Sbjct: 653 CRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEG 712
Query: 372 GCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITSELHNLGAEEKG 431
GCS I + +H+F V D +HP ++IY LD + ++K GYV + LH L E
Sbjct: 713 GCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDE 772
Query: 432 NA----LSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYNREVIIRD 487
L HSEK+A+AFG+++T +RV KNLR+C DCHN K +S V RE+++RD
Sbjct: 773 AEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRD 832
Query: 488 RLRFHHFREGRCSCNDYW 505
RFHHF++G+CSCNDYW
Sbjct: 833 LNRFHHFKDGKCSCNDYW 850
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 114/224 (50%), Gaps = 7/224 (3%)
Query: 27 PTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACK 86
P + S +K C++ G +HAR++ + DS L +L+ LYS S +A
Sbjct: 59 PMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAED 118
Query: 87 LFDEIP---QRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQAC 143
+F+ + +RD V+W+ +++CY N R DA+ +F + E G P+D V++AC
Sbjct: 119 VFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVF--VEFLELGLVPNDYCYTAVIRAC 176
Query: 144 AHLGALEFGEKIHRYISEHG-YGSKMNLCNSLIAMYSKC-GSLGMAFEVFKGMPEKDVVS 201
++ + G ++ + G + S + + SLI M+ K S A++VF M E +VV+
Sbjct: 177 SNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVT 236
Query: 202 WSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACS 245
W+ MI+ G R+AI F M +G D T + V SAC+
Sbjct: 237 WTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACA 280
Score = 89.4 bits (220), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 153/327 (46%), Gaps = 20/327 (6%)
Query: 61 YQLDSQLMTTLMDLYSTFEKSFE-ACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLF 119
++ D + +L+D++ E SFE A K+FD++ + + V W ++I+ ++ R+A+ F
Sbjct: 198 FESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFF 257
Query: 120 DNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYS 179
L+ SG + D T V ACA L L G+++H + G + SL+ MY+
Sbjct: 258 --LDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVEC--SLVDMYA 313
Query: 180 KC---GSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGH-GRDAIESFGAMQRAG-VFPDD 234
KC GS+ +VF M + V+SW+A+I+G N + +AI F M G V P+
Sbjct: 314 KCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNH 373
Query: 235 QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLIT 294
TF+ AC + G L + K G+ N V+ + ++ ++ A +
Sbjct: 374 FTFSSAFKACGNLSDPRVGKQVLGQAFKR-GLASNSSVANSVISMFVKSDRMEDAQRAFE 432
Query: 295 SMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESG----DYVLLLNLYSSVG 350
S+ K + L G CR E+ + L E+ +E G + LL+ ++VG
Sbjct: 433 SLSEKNLVSYNTFLDGTCRNLNF----EQAFKLLSEITERELGVSAFTFASLLSGVANVG 488
Query: 351 DWEKVKELREFMNEKGLQ-TTPGCSTI 376
K +++ + + GL P C+ +
Sbjct: 489 SIRKGEQIHSQVVKLGLSCNQPVCNAL 515
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 127/283 (44%), Gaps = 31/283 (10%)
Query: 113 RDALCLFDNLNREESGCKP-DDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLC 171
R A+ D + R+ G +P D VT +L++C G+ +H + E L
Sbjct: 43 RGAVSALDLMARD--GIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLY 100
Query: 172 NSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRA 228
NSLI++YSK G A +VF+ M ++DVVSWSAM++ NG DAI+ F
Sbjct: 101 NSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLEL 160
Query: 229 GVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHY------GC-VVDLLG 281
G+ P+D +T V+ ACS+ V G + L G L H+ GC ++D+
Sbjct: 161 GLVPNDYCYTAVIRACSNSDFVGVGRVTL-------GFLMKTGHFESDVCVGCSLIDMFV 213
Query: 282 RA-GLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIE--LKAQESGD 338
+ + AY++ M + + W ++ C + I ++ L ES D
Sbjct: 214 KGENSFENAYKVFDKMS-ELNVVTWTLMITRC---MQMGFPREAIRFFLDMVLSGFES-D 268
Query: 339 YVLLLNLYSSVGDWEKV---KELREFMNEKGLQTTPGCSTIGL 378
L +++S+ + E + K+L + GL CS + +
Sbjct: 269 KFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVECSLVDM 311
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 95/197 (48%), Gaps = 4/197 (2%)
Query: 12 EEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTL 71
E+ F L ++ ++ + + F + + S+ G QIH++V++ G + + L
Sbjct: 456 EQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNAL 515
Query: 72 MDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKP 131
+ +YS A ++F+ + R+ ++W +I+ + ++ L F+ + E G KP
Sbjct: 516 ISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEE--GVKP 573
Query: 132 DDVTCLLVLQACAHLGALEFGEK-IHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEV 190
++VT + +L AC+H+G + G + + +H KM ++ + + G L AFE
Sbjct: 574 NEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEF 633
Query: 191 FKGMP-EKDVVSWSAMI 206
MP + DV+ W +
Sbjct: 634 INTMPFQADVLVWRTFL 650
>sp|Q9FND6|PP411_ARATH Pentatricopeptide repeat-containing protein At5g40410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2
SV=1
Length = 608
Score = 362 bits (930), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 193/508 (37%), Positives = 290/508 (57%), Gaps = 5/508 (0%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSF--AIKCCMKFCSLMGGLQIHARVLR 58
++ YS + F + +M + P +F I C+ S G IH V++
Sbjct: 103 LISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACVYGGSKEEGRCIHGLVMK 162
Query: 59 DGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCL 118
G + +++ ++ Y +CKLF+++ ++ V+WN +I +++N L
Sbjct: 163 FGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAY 222
Query: 119 FDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMY 178
F N++R G +PD T L VL++C +G + + IH I G+ + +L+ +Y
Sbjct: 223 F-NMSRR-VGHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFGGFSGNKCITTALLDLY 280
Query: 179 SKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFT 238
SK G L + VF + D ++W+AM++ A +G GRDAI+ F M G+ PD TFT
Sbjct: 281 SKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHFELMVHYGISPDHVTFT 340
Query: 239 GVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGV 298
+L+ACSH GLV+EG + + MSK + I P + HY C+VDLLGR+GLL AY LI M +
Sbjct: 341 HLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLGRSGLLQDAYGLIKEMPM 400
Query: 299 KPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKEL 358
+P S +W LLGACR++K LG + E L EL+ ++ +YV+L N+YS+ G W+ +
Sbjct: 401 EPSSGVWGALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVMLSNIYSASGLWKDASRI 460
Query: 359 REFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIA-GYVAE 417
R M +KGL GCS I +H+FVV D SHP +I + L EI K++K GY ++
Sbjct: 461 RNLMKQKGLVRASGCSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSEMGYKSK 520
Query: 418 ITSELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSG 477
LH++G + K ++ HSEK+A+AFG+L P I + KNLRIC DCH AK +S
Sbjct: 521 TEFVLHDVGEDVKEEMINQHSEKIAMAFGLLVVSPMEPIIIRKNLRICGDCHETAKAISL 580
Query: 478 VYNREVIIRDRLRFHHFREGRCSCNDYW 505
+ R +IIRD RFHHF +G CSC+DYW
Sbjct: 581 IEKRRIIIRDSKRFHHFLDGSCSCSDYW 608
Score = 112 bits (280), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 103/345 (29%), Positives = 159/345 (46%), Gaps = 34/345 (9%)
Query: 36 AIKCC--MKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ 93
A+K C ++ C L+ + + R G+ D L+ Y A KLFDE+P+
Sbjct: 40 AVKSCVSIELCRLLHCKVVKSVSYRHGFIGDQ-----LVGCYLRLGHDVCAEKLFDEMPE 94
Query: 94 RDTVAWNVLISCYIRNQRTRDALCLFDNLNR---EESGCKPDDVTCLLVLQACAHLGALE 150
RD V+WN LIS Y + R C F+ L+R E G +P++VT L ++ AC + G+ E
Sbjct: 95 RDLVSWNSLISGY--SGRGYLGKC-FEVLSRMMISEVGFRPNEVTFLSMISACVYGGSKE 151
Query: 151 FGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLA 210
G IH + + G ++ + N+ I Y K G L + ++F+ + K++VSW+ MI
Sbjct: 152 EGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWNTMIVIHL 211
Query: 211 MNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVD-----EGMMFLDRMSKDFG 265
NG + F +R G PD TF VL +C G+V G++ S +
Sbjct: 212 QNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFGGFSGNKC 271
Query: 266 ILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVI 325
I ++DL + G L+ + + + PDS W +L A H G I
Sbjct: 272 ITT------ALLDLYSKLGRLEDSSTVFHEI-TSPDSMAWTAMLAAYATH---GFGRDAI 321
Query: 326 EHLIELKAQE--SGDYVL---LLNLYSSVGDWEKVKELREFMNEK 365
+H EL S D+V LLN S G E+ K E M+++
Sbjct: 322 KHF-ELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKR 365
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 362 bits (929), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 186/492 (37%), Positives = 284/492 (57%), Gaps = 7/492 (1%)
Query: 18 FEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYST 77
+ +M + + + + IK C +L G +H + G+ LD+ + L+ YS
Sbjct: 95 YRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSK 154
Query: 78 FEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCL 137
A ++FD +P++ VAWN L+S + +N +A+ +F + ESG +PD T +
Sbjct: 155 CGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQM--RESGFEPDSATFV 212
Query: 138 LVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEK 197
+L ACA GA+ G +H+YI G + L +LI +YS+CG +G A EVF M E
Sbjct: 213 SLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKET 272
Query: 198 DVVSWSAMISGLAMNGHGRDAIESFGAMQR-AGVFPDDQTFTGVLSACSHCGLVDEGMMF 256
+V +W+AMIS +G+G+ A+E F M+ G P++ TF VLSAC+H GLV+EG
Sbjct: 273 NVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSV 332
Query: 257 LDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDST---IWRTLLGACR 313
RM+K + ++P + H+ C+VD+LGRAG LD+AY+ I + +T +W +LGAC+
Sbjct: 333 YKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPALWTAMLGACK 392
Query: 314 IHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGC 373
+H++ LG + + LI L+ G +V+L N+Y+ G ++V +R+ M L+ G
Sbjct: 393 MHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGY 452
Query: 374 STIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITSELHNLGAEEKGNA 433
S I ++ + F + D SH EIY+ L+ + + K GY +H + EEK A
Sbjct: 453 SVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFA 512
Query: 434 LSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYNREVIIRDRLRFHH 493
L YHSEKLA+AFG+L T I + KNLRIC DCH+ K +S V NR++ +RD+LRFHH
Sbjct: 513 LRYHSEKLAVAFGLLKTVD-VAITIVKNLRICEDCHSAFKYISIVSNRQITVRDKLRFHH 571
Query: 494 FREGRCSCNDYW 505
F+ G CSC DYW
Sbjct: 572 FQNGSCSCLDYW 583
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 133/277 (48%), Gaps = 9/277 (3%)
Query: 51 QIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQ 110
Q+HA ++ GY L+T L+ L + LF +P D +N +I
Sbjct: 27 QVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKS---TS 83
Query: 111 RTRDAL-CLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMN 169
+ R L C+ S P + T V+++CA L AL G+ +H + G+G
Sbjct: 84 KLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTY 143
Query: 170 LCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAG 229
+ +L+ YSKCG + A +VF MPEK +V+W++++SG NG +AI+ F M+ +G
Sbjct: 144 VQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESG 203
Query: 230 VFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQA 289
PD TF +LSAC+ G V G + + G+ N+ +++L R G + +A
Sbjct: 204 FEPDSATFVSLLSACAQTGAVSLGSWVHQYIISE-GLDLNVKLGTALINLYSRCGDVGKA 262
Query: 290 YQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIE 326
++ M + + W ++ A H + G++ +E
Sbjct: 263 REVFDKMK-ETNVAAWTAMISAYGTHGY---GQQAVE 295
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 109/220 (49%), Gaps = 12/220 (5%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
+V + + +E +F +MR+ + + C + ++ G +H ++ +G
Sbjct: 179 LVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEG 238
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
L+ +L T L++LYS +A ++FD++ + + AW +IS Y + + A+ LF+
Sbjct: 239 LDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFN 298
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGY----GSKMNLCNSLIA 176
+ ++ G P++VT + VL ACAH G +E G +++ +++ Y G + ++C ++
Sbjct: 299 KM-EDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTK-SYRLIPGVEHHVC--MVD 354
Query: 177 MYSKCGSLGMAFEVFKGMPEKDVVS----WSAMISGLAMN 212
M + G L A++ + + W+AM+ M+
Sbjct: 355 MLGRAGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMH 394
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 106/272 (38%), Gaps = 53/272 (19%)
Query: 153 EKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMN 212
+++H ++ GYG +L LI + ++ +F +P D ++++I +
Sbjct: 26 QQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSKL 85
Query: 213 GHGRDAIESFGAMQRAGVFPDDQTFTGVLSAC---------------------------- 244
+ + M + V P + TFT V+ +C
Sbjct: 86 RLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQ 145
Query: 245 -------SHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM- 296
S CG ++ DRM + +I + +V + GL D+A Q+ M
Sbjct: 146 AALVTFYSKCGDMEGARQVFDRMPEK-----SIVAWNSLVSGFEQNGLADEAIQVFYQMR 200
Query: 297 --GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDY-----VLLLNLYSSV 349
G +PDS + +LL AC V+LG V +++I E D L+NLYS
Sbjct: 201 ESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYII----SEGLDLNVKLGTALINLYSRC 256
Query: 350 GDWEKVKELREFMNEKGLQT-TPGCSTIGLKG 380
GD K +E+ + M E + T S G G
Sbjct: 257 GDVGKAREVFDKMKETNVAAWTAMISAYGTHG 288
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 358 bits (920), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 178/505 (35%), Positives = 296/505 (58%), Gaps = 2/505 (0%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M+ Y+ + E +F +MR + + F S + C C + ++H ++
Sbjct: 133 MIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTC 192
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
L+ + T L+DLY+ +A ++F+ + + +V W+ +++ Y++N+ +AL L+
Sbjct: 193 IDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYR 252
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180
R + + T V+ AC++L AL G+++H I + G+GS + + +S + MY+K
Sbjct: 253 RAQR--MSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAK 310
Query: 181 CGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240
CGSL ++ +F + EK++ W+ +ISG A + ++ + F MQ+ G+ P++ TF+ +
Sbjct: 311 CGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSL 370
Query: 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKP 300
LS C H GLV+EG F M +G+ PN+ HY C+VD+LGRAGLL +AY+LI S+ P
Sbjct: 371 LSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDP 430
Query: 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELRE 360
++IW +LL +CR++K++ L E E L EL+ + +G++VLL N+Y++ WE++ + R+
Sbjct: 431 TASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRK 490
Query: 361 FMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITS 420
+ + ++ G S I +K VH F V + HPRI EI LD + + + GY +
Sbjct: 491 LLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVEH 550
Query: 421 ELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYN 480
ELH++ +K L HSEKLA+ FG++ P + +R+ KNLRICVDCH F K S
Sbjct: 551 ELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATR 610
Query: 481 REVIIRDRLRFHHFREGRCSCNDYW 505
R +I+RD RFHHF +G CSC D+W
Sbjct: 611 RFIIVRDVNRFHHFSDGHCSCGDFW 635
Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 180/375 (48%), Gaps = 22/375 (5%)
Query: 37 IKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDT 96
++ C + ++M H +++R + D L+ L++ YS A ++FD + +R
Sbjct: 68 LQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSL 127
Query: 97 VAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQAC-AHLGALEFGEKI 155
V+WN +I Y RN+ +AL +F + E G K + T VL AC + ALE +K+
Sbjct: 128 VSWNTMIGLYTRNRMESEALDIFLEMRNE--GFKFSEFTISSVLSACGVNCDALE-CKKL 184
Query: 156 HRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHG 215
H + + + +L+ +Y+KCG + A +VF+ M +K V+WS+M++G N +
Sbjct: 185 HCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNY 244
Query: 216 RDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGC 275
+A+ + QR + + T + V+ ACS+ + EG + K G N+
Sbjct: 245 EEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKS-GFGSNVFVASS 303
Query: 276 VVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQE 335
VD+ + G L ++Y + + + K + +W T++ KH E +I L E K Q+
Sbjct: 304 AVDMYAKCGSLRESYIIFSEVQEK-NLELWNTIISG--FAKHARPKEVMI--LFE-KMQQ 357
Query: 336 SG---DYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDV-- 390
G + V +L S G V+E R F K ++TT G S VVH + D+
Sbjct: 358 DGMHPNEVTFSSLLSVCGHTGLVEEGRRFF--KLMRTTYGLSP----NVVHYSCMVDILG 411
Query: 391 SHPRINEIYQMLDEI 405
++E Y+++ I
Sbjct: 412 RAGLLSEAYELIKSI 426
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 4/173 (2%)
Query: 139 VLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKD 198
+LQ CA GA+ + H I + L N LI YSKCG + +A +VF GM E+
Sbjct: 67 ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126
Query: 199 VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACS-HCGLVDEGMMFL 257
+VSW+ MI N +A++ F M+ G + T + VLSAC +C ++ L
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALE--CKKL 184
Query: 258 DRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLG 310
+S I N++ ++DL + G++ A Q+ SM K S W +++
Sbjct: 185 HCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDK-SSVTWSSMVA 236
>sp|Q9FI49|PP428_ARATH Pentatricopeptide repeat-containing protein At5g50990
OS=Arabidopsis thaliana GN=PCMP-H59 PE=2 SV=2
Length = 534
Score = 358 bits (919), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 174/422 (41%), Positives = 262/422 (62%), Gaps = 4/422 (0%)
Query: 84 ACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQAC 143
A K+ ++ + WN++I Y+RN + +AL N+ + KP+ + L AC
Sbjct: 117 AKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNM-LSFTDIKPNKFSFASSLAAC 175
Query: 144 AHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWS 203
A LG L + +H + + G L ++L+ +Y+KCG +G + EVF + DV W+
Sbjct: 176 ARLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSIWN 235
Query: 204 AMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKD 263
AMI+G A +G +AI F M+ V PD TF G+L+ CSHCGL++EG + MS+
Sbjct: 236 AMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEGKEYFGLMSRR 295
Query: 264 FGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGER 323
F I P + HYG +VDLLGRAG + +AY+LI SM ++PD IWR+LL + R +K+ LGE
Sbjct: 296 FSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLLSSSRTYKNPELGEI 355
Query: 324 VIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVH 383
I++L + K SGDYVLL N+YSS WE +++RE M+++G++ G S + G++H
Sbjct: 356 AIQNLSKAK---SGDYVLLSNIYSSTKKWESAQKVRELMSKEGIRKAKGKSWLEFGGMIH 412
Query: 384 EFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITSELHNLGAEEKGNALSYHSEKLAI 443
F D SH IY++L+ + ++ K G+V++ L ++ EEK L+YHSEKLA+
Sbjct: 413 RFKAGDTSHIETKAIYKVLEGLIQKTKSQGFVSDTDLVLMDVSEEEKEENLNYHSEKLAL 472
Query: 444 AFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYNREVIIRDRLRFHHFREGRCSCND 503
A+ +L + PGT IR+ KN+R+C DCHN+ K +S + NR +I+RDR+RFH F +G CSC D
Sbjct: 473 AYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFHRFEDGLCSCRD 532
Query: 504 YW 505
YW
Sbjct: 533 YW 534
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 100/210 (47%), Gaps = 5/210 (2%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQ-KRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRD 59
M+ Y + EE + M I N F+ + ++ C + L +H+ ++
Sbjct: 135 MIGGYVRNVQYEEALKALKNMLSFTDIKPNKFSFASSLAACARLGDLHHAKWVHSLMIDS 194
Query: 60 GYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLF 119
G +L++ L + L+D+Y+ + ++F + + D WN +I+ + + +A+ +F
Sbjct: 195 GIELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSIWNAMITGFATHGLATEAIRVF 254
Query: 120 DNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEH-GYGSKMNLCNSLIAMY 178
+ E PD +T L +L C+H G LE G++ +S K+ +++ +
Sbjct: 255 SEMEAEH--VSPDSITFLGLLTTCSHCGLLEEGKEYFGLMSRRFSIQPKLEHYGAMVDLL 312
Query: 179 SKCGSLGMAFEVFKGMP-EKDVVSWSAMIS 207
+ G + A+E+ + MP E DVV W +++S
Sbjct: 313 GRAGRVKEAYELIESMPIEPDVVIWRSLLS 342
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 89/196 (45%), Gaps = 4/196 (2%)
Query: 172 NSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQR-AGV 230
N +I K G G+A +V + +++V++W+ MI G N +A+++ M +
Sbjct: 102 NLIIESLMKIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDI 161
Query: 231 FPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAY 290
P+ +F L+AC+ G + ++ + D GI N +VD+ + G + +
Sbjct: 162 KPNKFSFASSLAACARLGDLHHA-KWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSR 220
Query: 291 QLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHL-IELKAQESGDYVLLLNLYSSV 349
++ S+ + D +IW ++ H T RV + E + +S ++ LL S
Sbjct: 221 EVFYSVK-RNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHC 279
Query: 350 GDWEKVKELREFMNEK 365
G E+ KE M+ +
Sbjct: 280 GLLEEGKEYFGLMSRR 295
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 193,320,252
Number of Sequences: 539616
Number of extensions: 8264075
Number of successful extensions: 29795
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 129
Number of HSP's that attempted gapping in prelim test: 24893
Number of HSP's gapped (non-prelim): 1801
length of query: 505
length of database: 191,569,459
effective HSP length: 122
effective length of query: 383
effective length of database: 125,736,307
effective search space: 48157005581
effective search space used: 48157005581
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 63 (28.9 bits)