Query 010642
Match_columns 505
No_of_seqs 664 out of 3501
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 02:54:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010642.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010642hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 2E-106 5E-111 842.1 56.2 503 1-505 195-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 2E-100 4E-105 816.0 54.8 498 1-503 360-857 (857)
3 PLN03081 pentatricopeptide (PP 100.0 9.4E-63 2E-67 514.4 40.0 483 1-502 93-585 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 2.3E-63 5.1E-68 530.9 33.3 472 1-481 158-654 (857)
5 PLN03218 maturation of RBCL 1; 100.0 3.5E-59 7.5E-64 490.7 38.8 446 28-483 435-911 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 8.5E-57 1.9E-61 472.6 41.1 436 1-452 443-916 (1060)
7 PF14432 DYW_deaminase: DYW fa 100.0 2.1E-28 4.5E-33 189.9 7.5 106 372-495 2-116 (116)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 9.2E-24 2E-28 229.9 38.5 349 8-367 512-868 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 4.3E-23 9.4E-28 224.6 40.4 352 3-364 541-899 (899)
10 PRK11788 tetratricopeptide rep 99.9 9.9E-21 2.1E-25 185.7 29.8 292 75-372 45-354 (389)
11 PRK11788 tetratricopeptide rep 99.9 6.8E-20 1.5E-24 179.8 32.8 289 37-332 42-348 (389)
12 TIGR00990 3a0801s09 mitochondr 99.9 4.4E-19 9.5E-24 183.4 38.9 352 4-365 136-571 (615)
13 KOG4626 O-linked N-acetylgluco 99.9 1.3E-20 2.8E-25 177.7 23.5 349 5-366 126-486 (966)
14 PRK15174 Vi polysaccharide exp 99.9 1.9E-18 4.2E-23 178.1 37.1 323 3-335 50-385 (656)
15 PRK11447 cellulose synthase su 99.8 9.7E-18 2.1E-22 184.6 39.5 397 5-419 279-748 (1157)
16 PRK15174 Vi polysaccharide exp 99.8 2.3E-17 4.9E-22 170.3 37.5 351 6-366 16-382 (656)
17 KOG4626 O-linked N-acetylgluco 99.8 1.8E-18 3.9E-23 163.3 25.0 339 3-354 158-508 (966)
18 PRK11447 cellulose synthase su 99.8 1.2E-16 2.7E-21 175.9 42.2 350 5-369 361-745 (1157)
19 PRK10049 pgaA outer membrane p 99.8 3.4E-16 7.5E-21 164.9 40.4 355 4-365 24-456 (765)
20 TIGR00990 3a0801s09 mitochondr 99.8 8.4E-16 1.8E-20 159.0 35.2 361 32-407 129-570 (615)
21 PRK14574 hmsH outer membrane p 99.8 1.3E-14 2.9E-19 150.4 40.6 352 5-365 44-479 (822)
22 PRK10049 pgaA outer membrane p 99.8 1.3E-14 2.8E-19 153.1 41.1 343 15-366 2-423 (765)
23 PRK14574 hmsH outer membrane p 99.7 1.5E-13 3.4E-18 142.5 39.3 358 2-365 75-513 (822)
24 PRK09782 bacteriophage N4 rece 99.7 2E-13 4.4E-18 144.6 40.8 350 3-366 190-707 (987)
25 PRK09782 bacteriophage N4 rece 99.7 1.5E-13 3.2E-18 145.6 37.0 349 8-368 355-743 (987)
26 PF13429 TPR_15: Tetratricopep 99.6 2.7E-15 5.9E-20 139.7 9.5 256 101-363 13-275 (280)
27 PRK10747 putative protoheme IX 99.6 2E-12 4.2E-17 126.1 29.1 279 43-332 97-391 (398)
28 PF13429 TPR_15: Tetratricopep 99.6 7.7E-15 1.7E-19 136.6 11.6 253 4-261 17-275 (280)
29 KOG2003 TPR repeat-containing 99.6 4.1E-12 8.8E-17 116.6 28.3 342 4-351 285-709 (840)
30 KOG2076 RNA polymerase III tra 99.6 1.1E-11 2.5E-16 123.1 33.6 319 40-363 149-510 (895)
31 KOG1915 Cell cycle control pro 99.6 1.7E-11 3.8E-16 113.2 31.9 384 8-407 86-535 (677)
32 KOG4422 Uncharacterized conser 99.6 1.1E-11 2.4E-16 113.1 29.0 342 7-366 127-552 (625)
33 KOG1126 DNA-binding cell divis 99.6 7.3E-13 1.6E-17 127.5 22.0 280 45-336 334-625 (638)
34 KOG2002 TPR-containing nuclear 99.6 5.4E-12 1.2E-16 126.2 28.3 359 3-366 315-746 (1018)
35 TIGR00540 hemY_coli hemY prote 99.5 3.2E-11 7E-16 118.2 33.2 276 78-362 97-396 (409)
36 PRK10747 putative protoheme IX 99.5 4.4E-11 9.5E-16 116.7 33.0 275 78-364 97-389 (398)
37 KOG0495 HAT repeat protein [RN 99.5 1.6E-10 3.4E-15 111.0 35.0 361 5-379 526-892 (913)
38 KOG4422 Uncharacterized conser 99.5 3E-11 6.6E-16 110.3 28.8 224 2-229 214-463 (625)
39 KOG1126 DNA-binding cell divis 99.5 2.4E-12 5.3E-17 124.0 22.8 277 80-366 334-621 (638)
40 TIGR00540 hemY_coli hemY prote 99.5 1.9E-11 4.1E-16 119.9 28.6 284 41-331 95-399 (409)
41 KOG0547 Translocase of outer m 99.5 2.8E-11 6E-16 112.4 27.4 348 5-363 125-564 (606)
42 COG2956 Predicted N-acetylgluc 99.5 4.3E-11 9.4E-16 105.6 25.9 222 103-330 114-346 (389)
43 KOG2003 TPR repeat-containing 99.5 1.5E-10 3.2E-15 106.6 28.3 354 4-365 246-689 (840)
44 KOG1155 Anaphase-promoting com 99.5 6.3E-10 1.4E-14 102.9 32.2 253 105-364 236-494 (559)
45 KOG2076 RNA polymerase III tra 99.5 4.9E-10 1.1E-14 111.7 33.0 355 5-366 150-556 (895)
46 KOG0495 HAT repeat protein [RN 99.4 3.8E-09 8.2E-14 101.8 34.7 260 97-364 517-781 (913)
47 KOG2002 TPR-containing nuclear 99.4 1.2E-09 2.5E-14 109.9 32.6 134 232-365 450-593 (1018)
48 COG3071 HemY Uncharacterized e 99.4 1.1E-09 2.3E-14 99.9 28.8 280 43-332 97-391 (400)
49 KOG1155 Anaphase-promoting com 99.4 3.2E-10 6.8E-15 104.9 25.5 285 36-331 233-536 (559)
50 TIGR02521 type_IV_pilW type IV 99.4 1.4E-10 3E-15 104.8 22.9 197 167-364 30-231 (234)
51 KOG4318 Bicoid mRNA stability 99.4 1.1E-11 2.3E-16 122.7 16.1 264 117-422 11-275 (1088)
52 COG2956 Predicted N-acetylgluc 99.4 2E-09 4.3E-14 95.4 27.9 288 78-370 48-352 (389)
53 KOG1840 Kinesin light chain [C 99.4 5E-10 1.1E-14 109.1 26.3 232 132-363 198-477 (508)
54 KOG4318 Bicoid mRNA stability 99.4 4.6E-10 1E-14 111.4 26.0 259 16-289 11-290 (1088)
55 COG3071 HemY Uncharacterized e 99.3 1.5E-08 3.2E-13 92.6 32.5 276 78-365 97-390 (400)
56 PF13041 PPR_2: PPR repeat fam 99.3 3.9E-12 8.4E-17 83.7 6.8 50 197-246 1-50 (50)
57 PRK12370 invasion protein regu 99.3 1.9E-09 4.1E-14 109.9 28.4 261 94-366 254-536 (553)
58 KOG1173 Anaphase-promoting com 99.3 6.6E-09 1.4E-13 98.7 29.2 261 95-363 243-516 (611)
59 TIGR02521 type_IV_pilW type IV 99.3 2.2E-09 4.7E-14 96.9 24.0 161 96-261 31-196 (234)
60 PF13041 PPR_2: PPR repeat fam 99.3 1.2E-11 2.7E-16 81.3 6.1 50 94-145 1-50 (50)
61 PRK12370 invasion protein regu 99.3 1.5E-09 3.3E-14 110.6 23.6 256 28-296 254-532 (553)
62 KOG1173 Anaphase-promoting com 99.2 4.2E-09 9E-14 100.0 22.8 274 8-314 257-534 (611)
63 KOG1915 Cell cycle control pro 99.2 1.3E-07 2.8E-12 88.2 31.3 351 7-366 119-537 (677)
64 KOG1129 TPR repeat-containing 99.2 1.1E-09 2.4E-14 96.9 16.6 230 132-366 222-459 (478)
65 PF12569 NARP1: NMDA receptor- 99.2 1.8E-07 3.8E-12 92.6 32.1 258 3-263 12-334 (517)
66 KOG1840 Kinesin light chain [C 99.2 7.1E-09 1.5E-13 101.2 21.7 233 98-330 201-478 (508)
67 PRK11189 lipoprotein NlpI; Pro 99.1 5.9E-08 1.3E-12 90.7 26.3 222 110-340 40-274 (296)
68 KOG1174 Anaphase-promoting com 99.1 1.6E-07 3.4E-12 86.2 26.2 298 32-337 196-506 (564)
69 PRK11189 lipoprotein NlpI; Pro 99.1 9.1E-08 2E-12 89.4 25.5 188 67-262 66-264 (296)
70 KOG3785 Uncharacterized conser 99.0 1E-06 2.3E-11 79.3 27.9 189 173-366 290-491 (557)
71 COG3063 PilF Tfp pilus assembl 99.0 2.1E-07 4.6E-12 79.0 21.9 197 136-335 38-240 (250)
72 PF12569 NARP1: NMDA receptor- 99.0 1.7E-07 3.6E-12 92.8 24.6 255 105-367 13-293 (517)
73 KOG0547 Translocase of outer m 99.0 1.7E-06 3.7E-11 81.3 29.3 321 33-365 118-491 (606)
74 KOG1129 TPR repeat-containing 99.0 2.3E-08 4.9E-13 88.8 15.7 229 100-335 227-462 (478)
75 COG3063 PilF Tfp pilus assembl 99.0 8.9E-08 1.9E-12 81.3 18.4 162 202-367 38-204 (250)
76 KOG2376 Signal recognition par 99.0 4.7E-06 1E-10 80.2 31.6 348 3-362 20-517 (652)
77 KOG1156 N-terminal acetyltrans 98.9 4.7E-06 1E-10 81.1 30.8 352 9-367 55-470 (700)
78 cd05804 StaR_like StaR_like; a 98.9 3.5E-06 7.5E-11 81.6 30.0 60 307-366 269-337 (355)
79 PF04733 Coatomer_E: Coatomer 98.9 1.7E-07 3.8E-12 86.4 19.2 249 75-336 11-270 (290)
80 KOG4162 Predicted calmodulin-b 98.9 5.3E-06 1.1E-10 82.3 30.1 354 6-365 334-783 (799)
81 cd05804 StaR_like StaR_like; a 98.9 8E-06 1.7E-10 79.1 31.7 294 32-332 8-337 (355)
82 PF04733 Coatomer_E: Coatomer 98.9 4.3E-08 9.2E-13 90.4 14.6 245 104-365 9-265 (290)
83 KOG1156 N-terminal acetyltrans 98.9 1.5E-05 3.3E-10 77.7 30.8 350 7-367 19-436 (700)
84 KOG1125 TPR repeat-containing 98.9 8.2E-08 1.8E-12 91.8 15.3 216 143-364 295-526 (579)
85 KOG1070 rRNA processing protei 98.8 1E-06 2.2E-11 92.3 22.6 201 165-369 1455-1667(1710)
86 PRK04841 transcriptional regul 98.8 7.3E-06 1.6E-10 89.8 30.6 324 41-366 385-761 (903)
87 KOG2047 mRNA splicing factor [ 98.8 5.1E-05 1.1E-09 74.0 31.4 91 33-123 105-196 (835)
88 KOG4340 Uncharacterized conser 98.8 2.1E-06 4.5E-11 75.7 19.7 286 33-361 13-335 (459)
89 KOG1174 Anaphase-promoting com 98.8 1.6E-05 3.5E-10 73.3 26.1 261 94-364 230-499 (564)
90 KOG0624 dsRNA-activated protei 98.7 2.3E-05 5E-10 70.6 25.7 57 308-364 313-369 (504)
91 KOG4162 Predicted calmodulin-b 98.7 0.0001 2.2E-09 73.5 32.5 307 59-367 317-751 (799)
92 KOG4340 Uncharacterized conser 98.7 1.1E-05 2.5E-10 71.1 23.3 346 6-364 21-442 (459)
93 KOG0548 Molecular co-chaperone 98.7 3.4E-05 7.4E-10 73.7 27.0 100 5-106 12-114 (539)
94 KOG2047 mRNA splicing factor [ 98.7 3.7E-05 8.1E-10 74.9 27.4 325 31-364 249-686 (835)
95 PRK04841 transcriptional regul 98.7 4.4E-05 9.6E-10 83.7 32.0 327 7-335 386-764 (903)
96 KOG1128 Uncharacterized conser 98.6 2E-06 4.4E-11 84.7 17.9 226 164-414 394-621 (777)
97 PF12854 PPR_1: PPR repeat 98.6 5.7E-08 1.2E-12 57.3 4.2 33 163-195 2-34 (34)
98 TIGR03302 OM_YfiO outer membra 98.6 4.8E-06 1E-10 75.4 18.6 182 166-365 31-232 (235)
99 PF12854 PPR_1: PPR repeat 98.6 7.2E-08 1.6E-12 56.9 4.2 33 60-92 2-34 (34)
100 KOG3785 Uncharacterized conser 98.6 1.7E-05 3.7E-10 71.7 21.0 344 5-362 32-454 (557)
101 PLN02789 farnesyltranstransfer 98.6 1.5E-05 3.3E-10 74.6 21.5 228 98-362 39-299 (320)
102 KOG3616 Selective LIM binding 98.6 2.5E-05 5.5E-10 77.0 23.4 188 143-359 742-931 (1636)
103 KOG1070 rRNA processing protei 98.6 2.3E-05 5.1E-10 82.5 24.4 238 11-254 1441-1691(1710)
104 KOG1125 TPR repeat-containing 98.5 5.5E-06 1.2E-10 79.7 17.3 248 104-358 293-564 (579)
105 PRK10370 formate-dependent nit 98.5 9.8E-06 2.1E-10 70.6 17.6 147 207-367 24-175 (198)
106 KOG2376 Signal recognition par 98.5 0.00068 1.5E-08 65.8 30.8 121 35-164 17-141 (652)
107 KOG0624 dsRNA-activated protei 98.5 0.00041 8.8E-09 62.8 27.0 196 137-338 159-377 (504)
108 KOG0548 Molecular co-chaperone 98.5 3.7E-05 7.9E-10 73.5 21.3 323 38-366 10-456 (539)
109 KOG3617 WD40 and TPR repeat-co 98.5 4.2E-05 9E-10 76.5 22.1 232 29-296 725-993 (1416)
110 TIGR03302 OM_YfiO outer membra 98.5 1.2E-05 2.5E-10 72.9 17.4 181 131-333 31-234 (235)
111 KOG0985 Vesicle coat protein c 98.4 0.00052 1.1E-08 70.5 28.5 242 95-364 1103-1369(1666)
112 PLN02789 farnesyltranstransfer 98.4 0.00028 6.1E-09 66.2 25.5 143 66-212 38-189 (320)
113 KOG0985 Vesicle coat protein c 98.4 0.00019 4.2E-09 73.5 25.2 141 198-359 1103-1243(1666)
114 PRK10370 formate-dependent nit 98.4 3.6E-05 7.8E-10 67.1 17.9 154 175-339 23-181 (198)
115 KOG1128 Uncharacterized conser 98.4 8.5E-05 1.8E-09 73.6 21.7 215 62-296 395-613 (777)
116 COG5010 TadD Flp pilus assembl 98.4 5.6E-05 1.2E-09 66.0 18.1 154 203-359 70-225 (257)
117 PRK15359 type III secretion sy 98.4 1.4E-05 3E-10 65.8 13.9 108 237-346 27-136 (144)
118 KOG3081 Vesicle coat complex C 98.4 0.00036 7.8E-09 61.1 22.6 245 78-335 21-275 (299)
119 KOG3616 Selective LIM binding 98.4 0.00032 6.9E-09 69.5 24.7 258 74-366 741-1025(1636)
120 PRK15359 type III secretion sy 98.4 1.1E-05 2.4E-10 66.5 12.9 107 255-366 14-122 (144)
121 PRK14720 transcript cleavage f 98.4 0.00016 3.5E-09 75.6 23.9 236 29-313 30-268 (906)
122 KOG1127 TPR repeat-containing 98.3 0.00013 2.9E-09 74.6 21.7 81 281-361 827-909 (1238)
123 COG5010 TadD Flp pilus assembl 98.3 7.1E-05 1.5E-09 65.3 17.1 157 64-225 66-228 (257)
124 PRK15179 Vi polysaccharide bio 98.3 9.5E-05 2.1E-09 76.4 20.3 157 197-363 84-243 (694)
125 PRK14720 transcript cleavage f 98.3 0.00015 3.2E-09 75.9 21.5 228 94-347 29-268 (906)
126 KOG3617 WD40 and TPR repeat-co 98.3 0.00024 5.2E-09 71.3 21.6 242 63-330 724-995 (1416)
127 KOG1914 mRNA cleavage and poly 98.2 0.0033 7.1E-08 60.6 27.7 339 27-370 17-469 (656)
128 TIGR00756 PPR pentatricopeptid 98.2 2.1E-06 4.6E-11 51.3 4.5 35 200-234 1-35 (35)
129 COG4783 Putative Zn-dependent 98.2 0.00016 3.6E-09 68.6 18.9 175 184-363 253-435 (484)
130 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 4.1E-05 8.8E-10 73.2 15.1 121 71-195 175-295 (395)
131 PRK15179 Vi polysaccharide bio 98.2 0.00031 6.8E-09 72.7 22.5 128 95-227 85-216 (694)
132 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 4.3E-05 9.4E-10 73.0 14.7 123 237-364 172-296 (395)
133 KOG2053 Mitochondrial inherita 98.2 0.011 2.4E-07 60.5 33.0 179 6-191 20-213 (932)
134 KOG1127 TPR repeat-containing 98.2 0.0012 2.5E-08 68.1 24.3 173 186-362 801-993 (1238)
135 TIGR02552 LcrH_SycD type III s 98.1 4.9E-05 1.1E-09 62.0 11.9 95 271-365 18-114 (135)
136 KOG3081 Vesicle coat complex C 98.1 0.00061 1.3E-08 59.7 18.4 243 103-363 15-269 (299)
137 PF13812 PPR_3: Pentatricopept 98.1 5.9E-06 1.3E-10 49.0 4.4 33 200-232 2-34 (34)
138 COG4783 Putative Zn-dependent 98.1 0.0012 2.6E-08 63.0 21.5 143 201-365 308-454 (484)
139 TIGR00756 PPR pentatricopeptid 98.1 4.6E-06 1E-10 49.8 3.8 35 97-133 1-35 (35)
140 PRK15363 pathogenicity island 98.0 8.6E-05 1.9E-09 60.4 10.4 96 270-365 35-132 (157)
141 TIGR02552 LcrH_SycD type III s 97.9 0.00032 6.9E-09 57.2 13.3 101 235-337 18-120 (135)
142 PF09976 TPR_21: Tetratricopep 97.9 0.00066 1.4E-08 56.0 14.9 113 109-224 24-143 (145)
143 PF13812 PPR_3: Pentatricopept 97.9 1.7E-05 3.7E-10 46.9 3.8 33 97-131 2-34 (34)
144 KOG3060 Uncharacterized conser 97.9 0.006 1.3E-07 53.3 20.1 116 108-227 98-219 (289)
145 PF01535 PPR: PPR repeat; Int 97.9 2.1E-05 4.6E-10 45.3 3.6 31 200-230 1-31 (31)
146 PF09976 TPR_21: Tetratricopep 97.8 0.00058 1.3E-08 56.4 13.3 114 247-361 24-143 (145)
147 cd00189 TPR Tetratricopeptide 97.8 0.00025 5.4E-09 53.1 10.4 92 273-364 3-96 (100)
148 KOG3060 Uncharacterized conser 97.8 0.0021 4.6E-08 56.0 16.4 182 181-366 25-221 (289)
149 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00046 1E-08 54.6 12.0 98 239-336 7-110 (119)
150 PF12895 Apc3: Anaphase-promot 97.8 5.3E-05 1.1E-09 55.9 5.5 78 283-361 2-83 (84)
151 KOG1914 mRNA cleavage and poly 97.7 0.051 1.1E-06 52.8 30.6 157 201-360 368-534 (656)
152 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0006 1.3E-08 54.0 11.3 96 271-366 3-106 (119)
153 PF13414 TPR_11: TPR repeat; P 97.6 0.00031 6.7E-09 49.5 7.3 64 301-364 2-66 (69)
154 PF01535 PPR: PPR repeat; Int 97.6 6.4E-05 1.4E-09 43.3 3.1 28 97-124 1-28 (31)
155 PF05843 Suf: Suppressor of fo 97.6 0.0026 5.7E-08 58.9 14.7 133 200-335 2-140 (280)
156 KOG2053 Mitochondrial inherita 97.6 0.043 9.4E-07 56.5 23.7 122 77-203 21-149 (932)
157 cd00189 TPR Tetratricopeptide 97.6 0.00085 1.8E-08 50.1 9.6 91 99-193 3-93 (100)
158 PF10037 MRP-S27: Mitochondria 97.5 0.0031 6.6E-08 60.9 14.4 122 228-349 60-186 (429)
159 PLN03088 SGT1, suppressor of 97.5 0.00096 2.1E-08 64.1 10.8 104 240-345 8-113 (356)
160 PRK02603 photosystem I assembl 97.4 0.002 4.3E-08 55.0 11.2 79 273-351 38-121 (172)
161 PF13432 TPR_16: Tetratricopep 97.4 0.00052 1.1E-08 47.7 6.3 57 308-364 3-59 (65)
162 PF06239 ECSIT: Evolutionarily 97.4 0.0039 8.5E-08 53.4 12.4 107 129-250 43-154 (228)
163 KOG0550 Molecular chaperone (D 97.4 0.0053 1.2E-07 57.3 14.0 155 207-367 177-352 (486)
164 PLN03088 SGT1, suppressor of 97.4 0.0027 5.9E-08 61.0 12.9 103 205-310 8-111 (356)
165 CHL00033 ycf3 photosystem I as 97.4 0.002 4.4E-08 54.7 10.7 93 270-362 35-139 (168)
166 PRK02603 photosystem I assembl 97.4 0.0046 9.9E-08 52.7 12.7 91 95-188 34-126 (172)
167 PF04840 Vps16_C: Vps16, C-ter 97.4 0.13 2.8E-06 48.3 23.4 101 176-293 185-285 (319)
168 PF08579 RPM2: Mitochondrial r 97.4 0.0036 7.9E-08 47.4 10.2 81 98-180 27-116 (120)
169 PF05843 Suf: Suppressor of fo 97.4 0.0053 1.2E-07 56.8 13.8 126 98-227 3-135 (280)
170 PF12895 Apc3: Anaphase-promot 97.4 0.0005 1.1E-08 50.7 5.7 80 212-295 2-83 (84)
171 PF10037 MRP-S27: Mitochondria 97.3 0.0027 5.8E-08 61.3 11.9 120 60-181 61-186 (429)
172 PRK15363 pathogenicity island 97.3 0.0054 1.2E-07 50.1 11.8 94 95-193 34-128 (157)
173 PRK10153 DNA-binding transcrip 97.3 0.012 2.5E-07 59.3 16.8 64 301-365 419-482 (517)
174 PF14938 SNAP: Soluble NSF att 97.3 0.0074 1.6E-07 56.1 14.5 33 80-123 30-62 (282)
175 PF14938 SNAP: Soluble NSF att 97.3 0.015 3.2E-07 54.1 16.3 197 138-361 40-262 (282)
176 PF14559 TPR_19: Tetratricopep 97.3 0.00051 1.1E-08 48.2 4.9 53 313-365 2-54 (68)
177 KOG2041 WD40 repeat protein [G 97.3 0.15 3.3E-06 51.1 23.0 235 27-296 689-949 (1189)
178 CHL00033 ycf3 photosystem I as 97.3 0.0062 1.4E-07 51.7 12.4 81 96-179 35-117 (168)
179 PF08579 RPM2: Mitochondrial r 97.3 0.0035 7.6E-08 47.5 9.1 79 203-282 29-116 (120)
180 KOG0553 TPR repeat-containing 97.3 0.0011 2.4E-08 59.3 7.5 93 243-338 90-185 (304)
181 PRK10866 outer membrane biogen 97.3 0.14 3E-06 46.2 21.3 64 95-162 31-98 (243)
182 PRK10866 outer membrane biogen 97.2 0.051 1.1E-06 49.1 18.5 173 174-363 38-239 (243)
183 COG4235 Cytochrome c biogenesi 97.2 0.0073 1.6E-07 54.4 12.7 105 267-371 153-262 (287)
184 PF13432 TPR_16: Tetratricopep 97.2 0.002 4.3E-08 44.7 7.1 61 276-336 3-65 (65)
185 COG4700 Uncharacterized protei 97.2 0.059 1.3E-06 45.0 16.2 99 129-227 85-188 (251)
186 PRK10153 DNA-binding transcrip 97.2 0.023 4.9E-07 57.3 17.0 64 235-301 421-485 (517)
187 KOG2796 Uncharacterized conser 97.2 0.052 1.1E-06 47.8 16.6 128 99-228 180-315 (366)
188 KOG1130 Predicted G-alpha GTPa 97.2 0.0036 7.8E-08 58.3 10.0 128 236-363 197-342 (639)
189 KOG0553 TPR repeat-containing 97.2 0.0048 1E-07 55.3 10.5 100 207-310 89-190 (304)
190 PF13281 DUF4071: Domain of un 97.1 0.064 1.4E-06 50.9 18.4 73 172-244 145-227 (374)
191 PF12688 TPR_5: Tetratrico pep 97.1 0.014 3E-07 45.9 11.9 87 103-192 8-99 (120)
192 PF03704 BTAD: Bacterial trans 97.1 0.01 2.3E-07 48.9 11.5 114 244-371 16-136 (146)
193 COG3898 Uncharacterized membra 97.1 0.28 6.1E-06 46.0 24.8 276 7-296 96-389 (531)
194 PF13371 TPR_9: Tetratricopept 97.0 0.0024 5.2E-08 45.4 6.5 57 310-366 3-59 (73)
195 KOG0550 Molecular chaperone (D 97.0 0.24 5.2E-06 46.7 20.5 162 131-296 166-347 (486)
196 KOG1538 Uncharacterized conser 97.0 0.17 3.7E-06 50.4 20.4 202 33-301 601-805 (1081)
197 PF12688 TPR_5: Tetratrico pep 97.0 0.012 2.6E-07 46.3 10.1 88 5-92 11-102 (120)
198 COG4700 Uncharacterized protei 97.0 0.089 1.9E-06 43.9 15.2 126 62-191 86-216 (251)
199 KOG1130 Predicted G-alpha GTPa 97.0 0.0077 1.7E-07 56.2 10.2 257 5-262 27-343 (639)
200 PF06239 ECSIT: Evolutionarily 96.9 0.0089 1.9E-07 51.3 9.3 95 189-284 35-152 (228)
201 KOG2041 WD40 repeat protein [G 96.9 0.2 4.4E-06 50.3 19.4 250 81-364 679-951 (1189)
202 PRK10803 tol-pal system protei 96.8 0.012 2.5E-07 53.6 10.6 84 281-364 154-245 (263)
203 PRK15331 chaperone protein Sic 96.8 0.012 2.6E-07 48.4 9.3 88 277-364 44-133 (165)
204 PF14559 TPR_19: Tetratricopep 96.8 0.0036 7.9E-08 43.7 5.8 48 247-296 4-51 (68)
205 PF13525 YfiO: Outer membrane 96.8 0.28 6.1E-06 43.0 18.8 179 99-289 8-197 (203)
206 PF13414 TPR_11: TPR repeat; P 96.8 0.0046 1E-07 43.4 6.0 64 270-333 3-69 (69)
207 COG3898 Uncharacterized membra 96.8 0.48 1E-05 44.5 27.2 305 11-332 69-393 (531)
208 KOG2280 Vacuolar assembly/sort 96.8 0.77 1.7E-05 46.8 27.6 336 4-359 398-793 (829)
209 PF09205 DUF1955: Domain of un 96.5 0.076 1.6E-06 41.6 11.3 140 210-368 13-152 (161)
210 KOG2280 Vacuolar assembly/sort 96.5 1.1 2.4E-05 45.8 22.0 306 2-327 444-795 (829)
211 PF04840 Vps16_C: Vps16, C-ter 96.5 0.74 1.6E-05 43.3 24.7 85 271-361 178-262 (319)
212 PF12921 ATP13: Mitochondrial 96.5 0.031 6.7E-07 44.4 9.3 52 229-280 47-98 (126)
213 PF13525 YfiO: Outer membrane 96.4 0.42 9.1E-06 41.9 17.4 50 308-357 147-199 (203)
214 PRK10803 tol-pal system protei 96.4 0.064 1.4E-06 48.9 12.4 100 237-336 146-251 (263)
215 COG4235 Cytochrome c biogenesi 96.3 0.11 2.4E-06 47.0 12.7 97 63-162 154-256 (287)
216 PF13431 TPR_17: Tetratricopep 96.2 0.0055 1.2E-07 35.9 2.9 32 325-356 2-33 (34)
217 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.026 5.6E-07 54.3 9.0 97 269-368 74-177 (453)
218 PF12921 ATP13: Mitochondrial 96.2 0.042 9.2E-07 43.6 8.9 93 233-344 1-96 (126)
219 KOG2796 Uncharacterized conser 96.2 0.45 9.8E-06 42.2 15.5 163 171-334 139-318 (366)
220 PF13371 TPR_9: Tetratricopept 96.2 0.021 4.5E-07 40.5 6.5 61 278-338 3-65 (73)
221 PF13424 TPR_12: Tetratricopep 96.0 0.015 3.3E-07 41.9 5.2 26 304-329 48-73 (78)
222 PF13428 TPR_14: Tetratricopep 96.0 0.016 3.5E-07 36.3 4.5 41 303-343 2-42 (44)
223 KOG1538 Uncharacterized conser 95.9 0.36 7.9E-06 48.1 15.2 205 13-262 618-845 (1081)
224 PF04053 Coatomer_WDAD: Coatom 95.9 0.57 1.2E-05 46.2 16.8 132 32-194 297-428 (443)
225 PF13424 TPR_12: Tetratricopep 95.9 0.023 5E-07 40.9 5.5 62 303-364 6-74 (78)
226 KOG4555 TPR repeat-containing 95.7 0.15 3.3E-06 39.9 9.3 90 279-368 52-147 (175)
227 PF03704 BTAD: Bacterial trans 95.4 0.065 1.4E-06 44.1 7.1 55 205-260 68-122 (146)
228 KOG1585 Protein required for f 95.4 1.8 3.9E-05 38.1 16.1 83 276-359 156-250 (308)
229 PLN03098 LPA1 LOW PSII ACCUMUL 95.3 0.097 2.1E-06 50.5 8.8 61 233-296 74-138 (453)
230 COG1729 Uncharacterized protei 95.3 0.17 3.6E-06 45.3 9.7 99 236-335 144-248 (262)
231 PF07079 DUF1347: Protein of u 95.3 3 6.6E-05 40.2 27.2 343 7-363 91-522 (549)
232 KOG1941 Acetylcholine receptor 95.2 1.5 3.2E-05 40.9 15.5 125 238-362 126-272 (518)
233 smart00299 CLH Clathrin heavy 95.2 1.4 3E-05 35.8 15.1 86 33-122 10-95 (140)
234 KOG0543 FKBP-type peptidyl-pro 95.2 0.24 5.2E-06 46.8 10.6 63 303-365 258-320 (397)
235 PF13281 DUF4071: Domain of un 95.0 2.9 6.3E-05 39.9 17.5 162 204-366 146-335 (374)
236 PF10300 DUF3808: Protein of u 95.0 1.5 3.2E-05 44.0 16.6 161 202-365 191-376 (468)
237 KOG0543 FKBP-type peptidyl-pro 94.9 0.46 9.9E-06 44.9 11.8 95 271-365 258-355 (397)
238 COG0457 NrfG FOG: TPR repeat [ 94.9 2.5 5.3E-05 37.0 26.6 194 169-364 60-264 (291)
239 PF04053 Coatomer_WDAD: Coatom 94.8 0.81 1.8E-05 45.2 13.8 132 136-297 298-429 (443)
240 smart00299 CLH Clathrin heavy 94.7 1.7 3.6E-05 35.3 13.6 43 138-181 12-54 (140)
241 COG3118 Thioredoxin domain-con 94.7 2.2 4.9E-05 38.8 14.9 29 167-195 235-263 (304)
242 KOG1920 IkappaB kinase complex 94.6 7.3 0.00016 42.4 20.5 114 172-296 912-1025(1265)
243 PRK15331 chaperone protein Sic 94.5 0.54 1.2E-05 38.8 10.0 15 108-122 49-63 (165)
244 KOG1585 Protein required for f 94.5 3.1 6.7E-05 36.7 14.8 204 26-256 23-249 (308)
245 KOG3941 Intermediate in Toll s 94.5 0.37 8E-06 43.1 9.4 100 186-286 52-174 (406)
246 KOG1258 mRNA processing protei 94.4 6.1 0.00013 39.6 26.9 339 8-350 92-489 (577)
247 COG0457 NrfG FOG: TPR repeat [ 94.4 3.2 6.9E-05 36.3 25.4 199 134-334 60-268 (291)
248 PF10300 DUF3808: Protein of u 94.4 1.2 2.7E-05 44.5 14.4 171 49-227 176-375 (468)
249 PRK11619 lytic murein transgly 94.4 7.7 0.00017 40.6 30.5 117 247-363 254-373 (644)
250 PF04184 ST7: ST7 protein; In 94.4 3.5 7.6E-05 40.4 16.4 143 103-261 175-322 (539)
251 PF13512 TPR_18: Tetratricopep 94.4 1.3 2.7E-05 35.8 11.5 56 281-336 21-81 (142)
252 PF04184 ST7: ST7 protein; In 94.3 1.4 3.1E-05 43.0 13.7 148 211-370 180-329 (539)
253 KOG2610 Uncharacterized conser 94.2 1.9 4E-05 39.9 13.4 144 181-327 116-272 (491)
254 KOG1920 IkappaB kinase complex 94.1 4.1 9E-05 44.1 17.5 76 209-296 975-1052(1265)
255 KOG4555 TPR repeat-containing 93.8 0.53 1.2E-05 36.9 8.0 90 243-335 52-148 (175)
256 PF13512 TPR_18: Tetratricopep 93.8 2.4 5.3E-05 34.2 12.0 56 208-263 19-76 (142)
257 COG3118 Thioredoxin domain-con 93.8 5.3 0.00012 36.5 16.3 141 208-350 143-286 (304)
258 KOG3941 Intermediate in Toll s 93.7 0.55 1.2E-05 42.1 9.0 100 82-183 51-173 (406)
259 COG4105 ComL DNA uptake lipopr 93.7 4.9 0.00011 35.9 20.3 57 308-364 173-232 (254)
260 COG1729 Uncharacterized protei 93.7 1.7 3.6E-05 39.1 12.1 95 201-296 144-241 (262)
261 COG5107 RNA14 Pre-mRNA 3'-end 92.9 9.4 0.0002 37.0 17.7 132 199-334 397-534 (660)
262 PF07035 Mic1: Colon cancer-as 92.9 4.9 0.00011 33.6 13.2 134 15-162 14-149 (167)
263 PRK11906 transcriptional regul 92.9 2.3 5E-05 41.4 12.5 77 287-363 321-399 (458)
264 PRK11906 transcriptional regul 92.8 4.9 0.00011 39.2 14.6 158 200-360 252-431 (458)
265 COG3629 DnrI DNA-binding trans 92.8 0.64 1.4E-05 42.3 8.3 63 302-364 153-215 (280)
266 PF09205 DUF1955: Domain of un 92.5 4.5 9.8E-05 32.0 13.1 136 179-333 13-151 (161)
267 PF00515 TPR_1: Tetratricopept 92.4 0.34 7.3E-06 28.0 4.2 32 303-334 2-33 (34)
268 PRK09687 putative lyase; Provi 92.3 9.2 0.0002 35.4 26.9 235 62-311 34-276 (280)
269 PF07719 TPR_2: Tetratricopept 92.1 0.55 1.2E-05 27.0 4.9 31 304-334 3-33 (34)
270 PF13170 DUF4003: Protein of u 92.0 4.8 0.00011 37.5 13.3 61 216-277 160-224 (297)
271 COG4785 NlpI Lipoprotein NlpI, 91.9 7.9 0.00017 33.6 14.9 162 199-367 99-268 (297)
272 PF08631 SPO22: Meiosis protei 91.8 11 0.00023 34.9 22.0 60 135-195 86-148 (278)
273 COG4649 Uncharacterized protei 91.5 4 8.7E-05 34.0 10.5 85 280-364 104-195 (221)
274 PF13176 TPR_7: Tetratricopept 91.3 0.5 1.1E-05 27.9 4.1 26 338-363 1-26 (36)
275 PF13170 DUF4003: Protein of u 91.1 8.2 0.00018 36.0 13.8 63 215-277 78-148 (297)
276 COG5107 RNA14 Pre-mRNA 3'-end 91.0 16 0.00035 35.5 30.9 126 236-363 399-529 (660)
277 PF13431 TPR_17: Tetratricopep 91.0 0.39 8.5E-06 28.0 3.3 32 156-188 2-33 (34)
278 COG4649 Uncharacterized protei 90.9 2.5 5.5E-05 35.1 8.9 50 179-228 143-196 (221)
279 PF13428 TPR_14: Tetratricopep 90.8 0.98 2.1E-05 28.1 5.3 26 99-124 4-29 (44)
280 COG3947 Response regulator con 90.8 13 0.00028 34.0 15.0 56 308-363 285-340 (361)
281 KOG2610 Uncharacterized conser 90.6 2.8 6.1E-05 38.7 9.8 159 211-372 115-283 (491)
282 PF00637 Clathrin: Region in C 90.5 0.54 1.2E-05 38.4 5.1 53 2-54 14-66 (143)
283 KOG1941 Acetylcholine receptor 90.5 5.7 0.00012 37.3 11.7 218 43-261 19-273 (518)
284 KOG2114 Vacuolar assembly/sort 90.4 21 0.00045 37.6 16.6 179 135-328 336-516 (933)
285 PF07079 DUF1347: Protein of u 90.2 19 0.00041 35.1 24.5 219 111-340 274-529 (549)
286 PF02259 FAT: FAT domain; Int 90.0 18 0.0004 34.5 16.4 66 301-366 145-214 (352)
287 PF13176 TPR_7: Tetratricopept 90.0 0.78 1.7E-05 27.0 4.1 24 202-225 2-25 (36)
288 PF09613 HrpB1_HrpK: Bacterial 89.8 10 0.00022 31.3 12.1 88 243-333 19-108 (160)
289 PF10602 RPN7: 26S proteasome 89.8 8.5 0.00018 32.8 11.8 57 170-226 38-100 (177)
290 KOG4234 TPR repeat-containing 89.6 1.5 3.3E-05 37.3 6.8 87 280-366 105-198 (271)
291 COG3629 DnrI DNA-binding trans 89.3 3.3 7.1E-05 37.8 9.3 72 237-310 156-235 (280)
292 KOG4570 Uncharacterized conser 89.0 4.6 0.0001 37.0 9.8 99 59-163 58-165 (418)
293 PF08631 SPO22: Meiosis protei 89.0 19 0.00041 33.3 23.7 18 107-124 4-21 (278)
294 PF09613 HrpB1_HrpK: Bacterial 88.9 12 0.00026 31.0 12.5 52 144-196 21-72 (160)
295 PF02259 FAT: FAT domain; Int 88.6 23 0.0005 33.8 19.8 66 197-262 144-212 (352)
296 KOG2066 Vacuolar assembly/sort 88.4 35 0.00077 35.7 22.8 53 3-57 364-419 (846)
297 PF00515 TPR_1: Tetratricopept 88.4 0.9 2E-05 26.1 3.6 28 97-124 2-29 (34)
298 cd00923 Cyt_c_Oxidase_Va Cytoc 87.9 3.7 7.9E-05 30.5 6.9 47 297-343 37-83 (103)
299 PF10602 RPN7: 26S proteasome 87.9 5.4 0.00012 34.0 9.4 94 98-195 38-140 (177)
300 PF13181 TPR_8: Tetratricopept 87.8 1.4 3E-05 25.3 4.1 30 304-333 3-32 (34)
301 PF02284 COX5A: Cytochrome c o 87.7 3.7 8E-05 30.8 7.0 47 297-343 40-86 (108)
302 KOG4570 Uncharacterized conser 87.3 5.3 0.00012 36.7 9.1 98 162-263 58-164 (418)
303 KOG0890 Protein kinase of the 86.8 78 0.0017 37.9 26.3 306 39-367 1392-1733(2382)
304 KOG1258 mRNA processing protei 86.8 38 0.00083 34.3 24.5 120 234-357 297-421 (577)
305 KOG1586 Protein required for f 86.5 22 0.00049 31.4 13.2 53 284-336 128-188 (288)
306 TIGR02561 HrpB1_HrpK type III 86.0 17 0.00037 29.6 11.4 67 144-211 21-88 (153)
307 PF02284 COX5A: Cytochrome c o 85.6 4.3 9.3E-05 30.5 6.3 60 217-278 28-87 (108)
308 TIGR02561 HrpB1_HrpK type III 85.4 6.7 0.00014 31.9 7.9 51 315-365 23-73 (153)
309 KOG0276 Vesicle coat complex C 85.2 11 0.00024 37.9 10.8 104 179-300 648-751 (794)
310 KOG1464 COP9 signalosome, subu 84.8 30 0.00064 31.3 12.5 131 202-332 68-221 (440)
311 KOG4648 Uncharacterized conser 84.8 2.4 5.1E-05 39.3 5.7 107 242-355 105-214 (536)
312 PF07719 TPR_2: Tetratricopept 84.6 1.9 4.1E-05 24.6 3.6 27 98-124 3-29 (34)
313 cd00923 Cyt_c_Oxidase_Va Cytoc 84.5 13 0.00029 27.6 8.3 63 214-278 22-84 (103)
314 PF00637 Clathrin: Region in C 84.2 0.66 1.4E-05 37.9 1.9 87 35-124 12-98 (143)
315 PRK15180 Vi polysaccharide bio 83.9 20 0.00043 35.1 11.6 126 245-372 300-427 (831)
316 PF13174 TPR_6: Tetratricopept 83.7 3.5 7.6E-05 23.2 4.5 27 308-334 6-32 (33)
317 COG1747 Uncharacterized N-term 83.7 49 0.0011 32.9 17.2 174 95-279 65-248 (711)
318 KOG1464 COP9 signalosome, subu 83.6 34 0.00073 30.9 15.1 242 79-326 41-327 (440)
319 KOG0276 Vesicle coat complex C 83.2 17 0.00036 36.8 11.0 99 76-193 648-746 (794)
320 KOG2114 Vacuolar assembly/sort 83.2 67 0.0015 34.1 23.7 51 308-361 711-761 (933)
321 PF13374 TPR_10: Tetratricopep 83.1 2.7 5.9E-05 25.3 4.1 28 337-364 3-30 (42)
322 PF07721 TPR_4: Tetratricopept 83.0 2.1 4.5E-05 23.0 3.0 23 338-360 3-25 (26)
323 PF11207 DUF2989: Protein of u 82.9 13 0.00028 32.1 9.0 42 146-187 153-197 (203)
324 PF13374 TPR_10: Tetratricopep 82.5 2.6 5.7E-05 25.3 3.8 28 97-124 3-30 (42)
325 PF11207 DUF2989: Protein of u 82.4 12 0.00026 32.2 8.7 74 41-116 118-198 (203)
326 COG3947 Response regulator con 82.3 40 0.00087 30.9 12.7 68 170-237 281-356 (361)
327 PF14853 Fis1_TPR_C: Fis1 C-te 81.7 12 0.00026 24.4 6.7 50 339-414 4-53 (53)
328 PRK15180 Vi polysaccharide bio 81.2 6.9 0.00015 38.1 7.5 122 210-335 300-424 (831)
329 PF07721 TPR_4: Tetratricopept 81.1 3.2 7E-05 22.2 3.3 22 171-192 4-25 (26)
330 KOG2066 Vacuolar assembly/sort 80.7 80 0.0017 33.2 25.6 150 41-200 367-537 (846)
331 KOG4234 TPR repeat-containing 78.8 13 0.00028 32.0 7.5 91 103-197 102-197 (271)
332 COG2976 Uncharacterized protei 78.2 43 0.00094 28.8 13.5 112 217-332 70-189 (207)
333 COG2909 MalT ATP-dependent tra 77.8 1E+02 0.0023 33.0 24.0 188 179-370 426-652 (894)
334 COG1747 Uncharacterized N-term 77.6 80 0.0017 31.5 22.1 175 165-346 63-249 (711)
335 PF13181 TPR_8: Tetratricopept 77.3 6.6 0.00014 22.3 4.2 28 337-364 2-29 (34)
336 PF06552 TOM20_plant: Plant sp 76.8 35 0.00077 28.9 9.5 66 297-369 63-140 (186)
337 PF13174 TPR_6: Tetratricopept 76.6 4 8.6E-05 22.9 3.1 28 338-365 2-29 (33)
338 KOG3364 Membrane protein invol 75.7 26 0.00056 28.1 7.9 51 315-365 48-100 (149)
339 TIGR03504 FimV_Cterm FimV C-te 75.2 6 0.00013 24.6 3.6 27 340-366 3-29 (44)
340 PRK13342 recombination factor 73.3 1E+02 0.0022 30.5 13.8 43 98-142 229-274 (413)
341 COG4455 ImpE Protein of avirul 72.5 25 0.00053 30.8 7.7 58 202-261 4-62 (273)
342 COG4455 ImpE Protein of avirul 72.3 16 0.00035 31.8 6.6 64 272-335 3-68 (273)
343 PRK10941 hypothetical protein; 72.1 24 0.00052 32.4 8.3 62 304-365 183-244 (269)
344 PF07163 Pex26: Pex26 protein; 72.0 53 0.0011 30.0 9.9 88 206-296 90-184 (309)
345 smart00028 TPR Tetratricopepti 71.9 9.4 0.0002 20.4 4.0 25 307-331 6-30 (34)
346 PRK09687 putative lyase; Provi 71.8 84 0.0018 29.1 27.4 226 88-333 29-265 (280)
347 KOG1550 Extracellular protein 71.3 1.3E+02 0.0028 31.1 15.0 178 184-369 228-430 (552)
348 PF14853 Fis1_TPR_C: Fis1 C-te 71.3 8.2 0.00018 25.2 3.7 31 307-337 6-36 (53)
349 TIGR02508 type_III_yscG type I 70.9 43 0.00092 25.3 9.9 86 148-237 20-105 (115)
350 PF13762 MNE1: Mitochondrial s 70.5 57 0.0012 26.6 10.1 78 67-146 41-128 (145)
351 KOG4648 Uncharacterized conser 69.7 12 0.00026 34.9 5.7 56 103-162 104-160 (536)
352 PF04097 Nic96: Nup93/Nic96; 69.2 79 0.0017 33.1 12.4 44 65-109 112-158 (613)
353 KOG2297 Predicted translation 68.9 99 0.0021 28.7 13.2 44 95-142 110-155 (412)
354 PF10345 Cohesin_load: Cohesin 66.2 1.8E+02 0.0038 30.6 25.5 48 313-360 372-428 (608)
355 PF04097 Nic96: Nup93/Nic96; 66.1 46 0.001 34.8 10.0 21 280-300 515-535 (613)
356 COG4105 ComL DNA uptake lipopr 66.1 1E+02 0.0022 27.8 23.1 59 103-161 41-99 (254)
357 COG2976 Uncharacterized protei 65.9 88 0.0019 27.0 14.2 90 140-229 96-189 (207)
358 cd08819 CARD_MDA5_2 Caspase ac 65.8 45 0.00098 24.4 6.8 66 152-219 21-86 (88)
359 PRK13800 putative oxidoreducta 65.2 2.3E+02 0.0049 31.5 24.6 254 86-363 625-879 (897)
360 PF07035 Mic1: Colon cancer-as 65.1 83 0.0018 26.4 16.1 18 207-224 97-114 (167)
361 KOG4077 Cytochrome c oxidase, 65.0 36 0.00077 26.8 6.5 48 295-342 77-124 (149)
362 TIGR03504 FimV_Cterm FimV C-te 64.9 16 0.00035 22.7 3.9 22 206-227 6-27 (44)
363 PF11768 DUF3312: Protein of u 64.4 88 0.0019 31.6 10.8 56 172-227 412-472 (545)
364 PF10579 Rapsyn_N: Rapsyn N-te 64.2 22 0.00047 25.4 4.8 45 314-358 18-65 (80)
365 COG4785 NlpI Lipoprotein NlpI, 63.9 1E+02 0.0022 27.1 15.3 157 96-263 99-266 (297)
366 PF10366 Vps39_1: Vacuolar sor 63.8 65 0.0014 24.8 8.0 27 201-227 41-67 (108)
367 PRK11619 lytic murein transgly 63.3 2E+02 0.0044 30.3 32.0 223 147-370 255-510 (644)
368 PF09670 Cas_Cas02710: CRISPR- 62.2 1.4E+02 0.0031 29.1 11.9 54 208-262 140-197 (379)
369 PF07163 Pex26: Pex26 protein; 61.5 47 0.001 30.3 7.6 84 36-119 89-181 (309)
370 PRK12798 chemotaxis protein; R 60.7 1.7E+02 0.0037 28.6 22.3 185 181-368 125-327 (421)
371 COG5159 RPN6 26S proteasome re 60.5 1.4E+02 0.003 27.5 15.3 210 5-227 13-254 (421)
372 PF08311 Mad3_BUB1_I: Mad3/BUB 60.2 74 0.0016 25.2 8.0 42 320-361 81-124 (126)
373 COG5108 RPO41 Mitochondrial DN 59.7 54 0.0012 33.7 8.4 76 239-314 33-115 (1117)
374 COG2909 MalT ATP-dependent tra 59.6 2.6E+02 0.0056 30.3 24.9 190 106-296 425-644 (894)
375 PF10579 Rapsyn_N: Rapsyn N-te 59.4 26 0.00057 25.0 4.6 44 212-255 19-64 (80)
376 COG5159 RPN6 26S proteasome re 58.9 1.5E+02 0.0032 27.3 10.5 34 205-238 9-42 (421)
377 KOG4077 Cytochrome c oxidase, 58.8 56 0.0012 25.8 6.6 71 217-298 67-137 (149)
378 PF11838 ERAP1_C: ERAP1-like C 58.1 1.7E+02 0.0036 27.6 17.5 110 250-360 146-261 (324)
379 KOG0686 COP9 signalosome, subu 57.9 1.9E+02 0.0041 28.1 13.9 59 66-124 151-215 (466)
380 PF11846 DUF3366: Domain of un 57.8 37 0.00081 29.3 6.5 37 297-333 139-175 (193)
381 PF11846 DUF3366: Domain of un 57.0 39 0.00083 29.2 6.5 30 267-296 141-170 (193)
382 PF11525 CopK: Copper resistan 56.9 4.7 0.0001 27.4 0.6 21 481-501 8-28 (73)
383 PF09986 DUF2225: Uncharacteri 56.8 69 0.0015 28.2 8.0 63 305-367 121-196 (214)
384 KOG0687 26S proteasome regulat 56.6 1.8E+02 0.0038 27.4 12.5 93 235-329 105-208 (393)
385 KOG4507 Uncharacterized conser 56.3 46 0.00099 33.7 7.2 111 14-124 194-311 (886)
386 cd08819 CARD_MDA5_2 Caspase ac 56.3 77 0.0017 23.2 6.9 66 49-116 21-86 (88)
387 KOG3807 Predicted membrane pro 56.1 75 0.0016 29.7 8.1 49 245-293 286-334 (556)
388 KOG0545 Aryl-hydrocarbon recep 56.0 1E+02 0.0023 27.6 8.6 56 310-365 238-293 (329)
389 KOG0376 Serine-threonine phosp 56.0 9.8 0.00021 37.2 2.7 95 240-337 10-107 (476)
390 KOG0292 Vesicle coat complex C 55.6 13 0.00028 39.2 3.6 97 212-332 606-702 (1202)
391 PF10366 Vps39_1: Vacuolar sor 55.1 64 0.0014 24.8 6.6 27 98-124 41-67 (108)
392 smart00386 HAT HAT (Half-A-TPR 55.0 25 0.00054 19.2 3.5 29 316-344 1-29 (33)
393 KOG1550 Extracellular protein 54.6 2.7E+02 0.0058 28.9 16.5 19 5-23 259-277 (552)
394 PF14561 TPR_20: Tetratricopep 53.3 46 0.001 24.5 5.4 44 323-366 9-52 (90)
395 PF12862 Apc5: Anaphase-promot 52.9 85 0.0018 23.2 6.9 25 308-332 47-71 (94)
396 KOG4507 Uncharacterized conser 52.7 1E+02 0.0022 31.5 8.8 83 8-91 226-309 (886)
397 KOG4642 Chaperone-dependent E3 52.4 41 0.00089 29.9 5.6 85 244-331 20-107 (284)
398 PF13929 mRNA_stabil: mRNA sta 52.3 2E+02 0.0042 26.7 14.5 115 109-224 141-263 (292)
399 TIGR02508 type_III_yscG type I 52.0 1E+02 0.0022 23.3 9.5 76 46-124 21-96 (115)
400 KOG0403 Neoplastic transformat 51.6 2.5E+02 0.0054 27.7 17.6 56 274-329 513-570 (645)
401 PF06552 TOM20_plant: Plant sp 51.5 69 0.0015 27.2 6.6 45 318-362 51-99 (186)
402 PF04910 Tcf25: Transcriptiona 51.4 2.4E+02 0.0051 27.3 14.4 64 301-364 99-167 (360)
403 PF04190 DUF410: Protein of un 50.8 2E+02 0.0043 26.3 16.0 82 167-263 89-170 (260)
404 KOG2300 Uncharacterized conser 50.6 2.7E+02 0.0059 27.8 19.5 213 82-295 299-552 (629)
405 KOG1308 Hsp70-interacting prot 50.6 12 0.00026 35.0 2.2 115 246-363 126-242 (377)
406 KOG2659 LisH motif-containing 50.4 1.4E+02 0.0031 26.4 8.6 92 202-296 29-129 (228)
407 TIGR02270 conserved hypothetic 49.7 2.7E+02 0.0058 27.5 24.2 235 37-297 45-279 (410)
408 PF14669 Asp_Glu_race_2: Putat 49.3 1.7E+02 0.0037 25.2 14.6 57 137-193 136-206 (233)
409 PF09477 Type_III_YscG: Bacter 49.3 1.2E+02 0.0026 23.3 10.4 80 147-229 20-99 (116)
410 PF12862 Apc5: Anaphase-promot 49.0 76 0.0017 23.5 6.1 53 312-364 8-69 (94)
411 PF09477 Type_III_YscG: Bacter 48.8 1.2E+02 0.0026 23.2 9.1 78 44-124 20-97 (116)
412 PF11663 Toxin_YhaV: Toxin wit 48.7 22 0.00047 28.4 3.1 33 210-244 106-138 (140)
413 KOG0403 Neoplastic transformat 47.8 2.9E+02 0.0063 27.3 17.8 63 305-367 512-574 (645)
414 TIGR02270 conserved hypothetic 47.8 2.9E+02 0.0062 27.3 25.3 181 131-328 98-278 (410)
415 PF06957 COPI_C: Coatomer (COP 47.7 96 0.0021 30.5 8.0 109 209-335 214-333 (422)
416 KOG2396 HAT (Half-A-TPR) repea 47.6 3.1E+02 0.0067 27.6 20.9 277 12-303 268-565 (568)
417 PF13762 MNE1: Mitochondrial s 47.2 1.6E+02 0.0034 24.1 11.5 76 172-247 43-128 (145)
418 cd08326 CARD_CASP9 Caspase act 46.2 93 0.002 22.6 5.9 61 154-218 20-80 (84)
419 PF08311 Mad3_BUB1_I: Mad3/BUB 46.2 1.5E+02 0.0032 23.5 8.8 42 151-192 81-123 (126)
420 PHA02875 ankyrin repeat protei 44.4 3.2E+02 0.0069 26.8 16.3 200 16-234 16-230 (413)
421 PRK10564 maltose regulon perip 44.3 47 0.001 30.7 5.0 41 201-241 259-299 (303)
422 PF14863 Alkyl_sulf_dimr: Alky 44.1 1.2E+02 0.0027 24.6 6.9 63 286-351 57-119 (141)
423 PF14689 SPOB_a: Sensor_kinase 44.0 38 0.00082 22.9 3.4 30 198-227 22-51 (62)
424 KOG4279 Serine/threonine prote 43.6 4.3E+02 0.0092 28.2 11.8 184 96-335 201-399 (1226)
425 KOG2063 Vacuolar assembly/sort 43.5 4.8E+02 0.01 28.6 14.7 175 171-346 507-742 (877)
426 PHA02875 ankyrin repeat protei 42.7 2.6E+02 0.0055 27.5 10.6 192 116-325 15-222 (413)
427 PF11848 DUF3368: Domain of un 42.6 86 0.0019 19.9 4.7 34 40-73 12-45 (48)
428 KOG4642 Chaperone-dependent E3 42.4 2.6E+02 0.0056 25.2 10.2 115 209-328 20-143 (284)
429 PF10255 Paf67: RNA polymerase 40.5 1.5E+02 0.0031 29.1 8.0 57 273-329 125-191 (404)
430 PRK10564 maltose regulon perip 39.8 51 0.0011 30.5 4.5 30 99-130 260-289 (303)
431 COG0735 Fur Fe2+/Zn2+ uptake r 39.4 1.8E+02 0.004 23.7 7.4 64 16-80 7-70 (145)
432 KOG1586 Protein required for f 38.6 2.9E+02 0.0064 24.8 17.7 57 281-337 165-230 (288)
433 PF10255 Paf67: RNA polymerase 38.2 2E+02 0.0044 28.2 8.5 56 171-226 125-191 (404)
434 KOG0551 Hsp90 co-chaperone CNS 38.1 1.1E+02 0.0024 28.8 6.3 84 278-361 89-178 (390)
435 PRK10941 hypothetical protein; 37.9 3.3E+02 0.0071 25.1 9.6 59 203-263 185-244 (269)
436 PF07575 Nucleopor_Nup85: Nup8 37.9 2.2E+02 0.0048 29.5 9.5 62 132-195 404-465 (566)
437 PF15469 Sec5: Exocyst complex 37.2 2.6E+02 0.0056 23.7 10.1 23 240-262 92-114 (182)
438 KOG3364 Membrane protein invol 37.1 1.6E+02 0.0035 23.8 6.3 32 305-336 74-105 (149)
439 PF07064 RIC1: RIC1; InterPro 37.1 3.3E+02 0.0071 24.9 13.4 82 75-162 163-249 (258)
440 PF14689 SPOB_a: Sensor_kinase 36.4 60 0.0013 21.9 3.5 27 338-364 25-51 (62)
441 COG2178 Predicted RNA-binding 36.2 2.9E+02 0.0062 23.9 9.7 18 347-364 132-149 (204)
442 KOG4814 Uncharacterized conser 35.3 1.6E+02 0.0036 30.4 7.5 86 280-365 364-457 (872)
443 PF10475 DUF2450: Protein of u 35.2 1.8E+02 0.0039 27.1 7.7 22 198-219 196-217 (291)
444 PF13934 ELYS: Nuclear pore co 34.8 3.3E+02 0.0072 24.2 12.4 19 206-224 115-133 (226)
445 PF03745 DUF309: Domain of unk 34.5 98 0.0021 20.9 4.2 45 43-87 12-61 (62)
446 PF11768 DUF3312: Protein of u 34.0 4.9E+02 0.011 26.6 10.5 27 98-124 410-436 (545)
447 PRK11639 zinc uptake transcrip 33.6 1.8E+02 0.0039 24.5 6.7 62 225-288 17-78 (169)
448 PF09670 Cas_Cas02710: CRISPR- 33.2 4.7E+02 0.01 25.5 10.5 55 39-94 140-198 (379)
449 cd08332 CARD_CASP2 Caspase act 33.2 2E+02 0.0043 21.2 6.2 57 154-214 24-80 (90)
450 PF07064 RIC1: RIC1; InterPro 33.2 3.8E+02 0.0083 24.5 15.4 87 273-365 156-249 (258)
451 COG0735 Fur Fe2+/Zn2+ uptake r 33.1 2.4E+02 0.0052 23.0 7.2 61 224-286 11-71 (145)
452 cd00280 TRFH Telomeric Repeat 33.0 2.9E+02 0.0064 23.7 7.5 22 241-262 118-139 (200)
453 PF12926 MOZART2: Mitotic-spin 32.2 2E+02 0.0044 21.0 7.1 42 154-195 29-70 (88)
454 PF11838 ERAP1_C: ERAP1-like C 31.9 4.3E+02 0.0093 24.7 16.5 78 150-227 147-229 (324)
455 smart00777 Mad3_BUB1_I Mad3/BU 31.8 2.6E+02 0.0057 22.2 8.0 42 319-360 80-123 (125)
456 COG4976 Predicted methyltransf 31.6 75 0.0016 28.2 4.0 53 282-334 7-61 (287)
457 KOG2422 Uncharacterized conser 31.5 6E+02 0.013 26.2 12.0 54 278-331 350-407 (665)
458 PRK13342 recombination factor 31.4 5.2E+02 0.011 25.5 14.1 22 213-234 244-265 (413)
459 KOG4567 GTPase-activating prot 31.1 4.5E+02 0.0098 24.7 10.0 43 220-262 264-306 (370)
460 PRK13800 putative oxidoreducta 30.9 7.8E+02 0.017 27.4 26.0 248 62-330 632-880 (897)
461 PF04034 DUF367: Domain of unk 30.2 2.8E+02 0.0061 22.0 7.3 54 271-324 67-121 (127)
462 PF02847 MA3: MA3 domain; Int 29.9 1.6E+02 0.0034 22.5 5.5 22 101-122 7-28 (113)
463 PF08967 DUF1884: Domain of un 29.9 56 0.0012 23.4 2.4 28 394-421 6-33 (85)
464 PF11817 Foie-gras_1: Foie gra 29.8 1.6E+02 0.0035 26.6 6.2 20 277-296 185-204 (247)
465 KOG3677 RNA polymerase I-assoc 29.7 4.2E+02 0.0091 26.0 8.8 60 135-194 237-298 (525)
466 KOG0292 Vesicle coat complex C 29.4 7.9E+02 0.017 26.9 12.4 132 177-332 652-783 (1202)
467 COG5108 RPO41 Mitochondrial DN 27.7 4.6E+02 0.01 27.5 9.2 47 138-184 33-81 (1117)
468 cd07153 Fur_like Ferric uptake 27.2 1.6E+02 0.0035 22.6 5.1 46 205-250 6-51 (116)
469 PF04190 DUF410: Protein of un 27.1 4.9E+02 0.011 23.8 14.9 27 64-90 89-115 (260)
470 COG0790 FOG: TPR repeat, SEL1 26.9 5E+02 0.011 23.8 18.9 46 79-124 91-141 (292)
471 TIGR03581 EF_0839 conserved hy 26.8 1.8E+02 0.004 25.4 5.5 83 111-195 136-235 (236)
472 PF12926 MOZART2: Mitotic-spin 26.7 2.6E+02 0.0056 20.5 7.0 62 29-92 9-70 (88)
473 COG4259 Uncharacterized protei 26.7 2.7E+02 0.0058 21.1 5.5 40 322-361 57-97 (121)
474 KOG3824 Huntingtin interacting 26.3 1.3E+02 0.0029 27.9 4.8 57 281-337 127-185 (472)
475 PF12069 DUF3549: Protein of u 26.3 5.8E+02 0.013 24.4 11.9 137 71-211 172-310 (340)
476 PF09454 Vps23_core: Vps23 cor 26.3 2.1E+02 0.0045 19.6 4.7 49 130-179 5-53 (65)
477 PRK09857 putative transposase; 25.8 5.5E+02 0.012 23.9 9.6 63 307-369 211-273 (292)
478 PRK13184 pknD serine/threonine 25.4 9.8E+02 0.021 26.7 25.0 146 213-363 670-831 (932)
479 PF13934 ELYS: Nuclear pore co 25.3 4.9E+02 0.011 23.2 12.5 104 202-314 79-184 (226)
480 PF09454 Vps23_core: Vps23 cor 25.1 1.6E+02 0.0034 20.2 4.0 50 300-349 6-55 (65)
481 PF10345 Cohesin_load: Cohesin 25.1 8.2E+02 0.018 25.7 29.8 179 13-193 39-250 (608)
482 KOG1463 26S proteasome regulat 24.6 6.2E+02 0.014 24.2 9.4 23 341-363 133-155 (411)
483 PF11817 Foie-gras_1: Foie gra 24.3 4.5E+02 0.0098 23.7 8.1 76 288-363 163-245 (247)
484 smart00544 MA3 Domain in DAP-5 24.2 3.2E+02 0.007 20.7 7.9 23 101-123 7-29 (113)
485 PF00244 14-3-3: 14-3-3 protei 23.9 2.7E+02 0.0059 24.9 6.5 161 1-161 7-197 (236)
486 KOG0686 COP9 signalosome, subu 23.7 7.1E+02 0.015 24.5 14.2 64 98-161 152-215 (466)
487 KOG0376 Serine-threonine phosp 23.5 1.6E+02 0.0036 29.1 5.2 100 176-280 12-115 (476)
488 cd07153 Fur_like Ferric uptake 23.5 98 0.0021 23.9 3.2 37 9-45 14-50 (116)
489 PF07720 TPR_3: Tetratricopept 23.4 1.7E+02 0.0037 17.2 4.8 17 308-324 7-23 (36)
490 KOG1524 WD40 repeat-containing 23.3 5.4E+02 0.012 26.1 8.5 60 269-331 572-631 (737)
491 PF14044 NETI: NETI protein 23.2 74 0.0016 21.0 1.9 16 403-418 11-26 (57)
492 PF09986 DUF2225: Uncharacteri 23.2 5.2E+02 0.011 22.8 9.0 26 99-124 168-193 (214)
493 PF04762 IKI3: IKI3 family; I 22.5 1.1E+03 0.024 26.4 13.1 120 213-362 792-927 (928)
494 smart00804 TAP_C C-terminal do 22.5 60 0.0013 22.1 1.5 25 109-134 38-62 (63)
495 PRK11639 zinc uptake transcrip 22.4 3.5E+02 0.0076 22.7 6.6 57 127-184 20-76 (169)
496 PF13929 mRNA_stabil: mRNA sta 22.3 6.4E+02 0.014 23.5 23.6 67 230-296 198-264 (292)
497 PF01475 FUR: Ferric uptake re 22.3 1.5E+02 0.0033 23.0 4.2 47 203-249 11-57 (120)
498 PF12968 DUF3856: Domain of Un 22.2 4E+02 0.0087 21.1 9.6 17 273-289 58-74 (144)
499 PF08424 NRDE-2: NRDE-2, neces 22.0 6.8E+02 0.015 23.7 14.8 145 18-164 8-185 (321)
500 PF14669 Asp_Glu_race_2: Putat 21.9 5.3E+02 0.011 22.4 15.0 59 238-296 136-207 (233)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.4e-106 Score=842.09 Aligned_cols=503 Identities=36% Similarity=0.658 Sum_probs=497.1
Q ss_pred CcccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 010642 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEK 80 (505)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 80 (505)
||++|++.|++++|+++|++|.+.|+.||..+|+.++.+|+..|+.+.+.+++..+.+.|+.||..++++|+++|+++|+
T Consensus 195 li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~ 274 (697)
T PLN03081 195 IIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD 274 (697)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHH
Q 010642 81 SFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYIS 160 (505)
Q Consensus 81 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 160 (505)
+++|.++|+.|+++|+++||+||.+|++.|++++|+++|++|.. .|+.||..||++++.+|++.|++++|.++|..|.
T Consensus 275 ~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~--~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~ 352 (697)
T PLN03081 275 IEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD--SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352 (697)
T ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010642 161 EHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240 (505)
Q Consensus 161 ~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 240 (505)
+.|++||..++++|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.+
T Consensus 353 ~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l 432 (697)
T PLN03081 353 RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432 (697)
T ss_pred HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhH
Q 010642 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTL 320 (505)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 320 (505)
+.+|++.|++++|.++|+.|.+.+|+.|+..+|++++++|++.|++++|.+++++|++.|+..+|++|+.+|..+|+++.
T Consensus 433 l~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~ 512 (697)
T PLN03081 433 LSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLEL 512 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHH
Confidence 99999999999999999999987899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEecCCCCcchHHHHH
Q 010642 321 GERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQ 400 (505)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (505)
|..+++++.+.+|.+..+|..|+++|++.|+|++|.++++.|++.|+++.|+++|+++++.+|.|++++..||+.+++++
T Consensus 513 a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~ 592 (697)
T PLN03081 513 GRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQ 592 (697)
T ss_pred HHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCcccccccccccCChhhhhhhhhhhhhHHHHHHHhccCCCCCeEEEEecccccCchhhhhHhhhcccC
Q 010642 401 MLDEINKQLKIAGYVAEITSELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYN 480 (505)
Q Consensus 401 ~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (505)
.+.++..+|++.||.||+.++++++++++++..+.+|||+||++||++.+|++.+|||+||||+|+|||+|+|+||++.+
T Consensus 593 ~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~ 672 (697)
T PLN03081 593 KLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTK 672 (697)
T ss_pred HHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCCccccccCCccCCCCCC
Q 010642 481 REVIIRDRLRFHHFREGRCSCNDYW 505 (505)
Q Consensus 481 ~~~~~~~~~~~h~~~~g~~~~~~~w 505 (505)
|+|+|||.+|||||++|+|||+|||
T Consensus 673 r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 673 REIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred eEEEEecCCccccCCCCcccccccC
Confidence 9999999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2e-100 Score=815.97 Aligned_cols=498 Identities=38% Similarity=0.729 Sum_probs=489.6
Q ss_pred CcccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 010642 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEK 80 (505)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 80 (505)
||.+|+++|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.|+..++++|+++|+++|+
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 439 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHH
Q 010642 81 SFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYIS 160 (505)
Q Consensus 81 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 160 (505)
+++|.++|++|.++|+++||++|.+|+++|+.++|+.+|++|.. +++||..||++++.+|++.|+++.+.++|..+.
T Consensus 440 ~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~---~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 440 IDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL---TLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516 (857)
T ss_pred HHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh---CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999976 599999999999999999999999999999999
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010642 161 EHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240 (505)
Q Consensus 161 ~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 240 (505)
+.|+.++..++|+|+++|+++|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.+
T Consensus 517 ~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l 595 (857)
T PLN03077 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595 (857)
T ss_pred HhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHH
Confidence 9999999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhH
Q 010642 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTL 320 (505)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 320 (505)
+.+|++.|++++|.++|+.|.+.+|+.|+..+|++|+++|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.
T Consensus 596 l~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~ 675 (857)
T PLN03077 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVEL 675 (857)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Confidence 99999999999999999999976799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEecCCCCcchHHHHH
Q 010642 321 GERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQ 400 (505)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (505)
|+.+.+++.+++|.++..|..|.+.|+..|+|++|.++++.|++.|++++|++|||++++.+|.|..++.+||+.++|+.
T Consensus 676 ~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~ 755 (857)
T PLN03077 676 GELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINT 755 (857)
T ss_pred HHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCcccccccccccCChhhhhhhhhhhhhHHHHHHHhccCCCCCeEEEEecccccCchhhhhHhhhcccC
Q 010642 401 MLDEINKQLKIAGYVAEITSELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYN 480 (505)
Q Consensus 401 ~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (505)
.|+++..+|++.||.||+..++ +.++++|+..+.+|||+||++||++++|++++|||+||+|+|+|||+++|+||++.+
T Consensus 756 ~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~ 834 (857)
T PLN03077 756 VLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVR 834 (857)
T ss_pred HHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhC
Confidence 9999999999999999999888 457788999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCCccccccCCccCCCC
Q 010642 481 REVIIRDRLRFHHFREGRCSCND 503 (505)
Q Consensus 481 ~~~~~~~~~~~h~~~~g~~~~~~ 503 (505)
|+|||||.+|||||++|+|||+|
T Consensus 835 r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 835 REISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred eEEEEecCCcceeCCCCcccCCC
Confidence 99999999999999999999998
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.4e-63 Score=514.36 Aligned_cols=483 Identities=21% Similarity=0.294 Sum_probs=425.9
Q ss_pred CcccchhcCCchHHHHHHHHHHhCC-CCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC
Q 010642 1 MVRAYSMSSSPEEGFYLFEKMRQKR-IPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFE 79 (505)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 79 (505)
+|.+|.+.|++++|+++|++|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+++.|+++|+++|
T Consensus 93 ~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g 172 (697)
T PLN03081 93 QIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG 172 (697)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCC
Confidence 3678899999999999999998864 789999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHH
Q 010642 80 KSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYI 159 (505)
Q Consensus 80 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~ 159 (505)
++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+ .|+.||..||+.++.+|+..|..+.+.+++..+
T Consensus 173 ~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~--~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~ 250 (697)
T PLN03081 173 MLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWE--DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCV 250 (697)
T ss_pred CHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH--hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 010642 160 SEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTG 239 (505)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 239 (505)
.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.
T Consensus 251 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ 330 (697)
T PLN03081 251 LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI 330 (697)
T ss_pred HHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchh
Q 010642 240 VLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVT 319 (505)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 319 (505)
++.+|++.|++++|.+++..|.+. |+.||..+|++||++|+++|++++|.++|++|. +||..+|++||.+|.++|+.+
T Consensus 331 ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~ 408 (697)
T PLN03081 331 MIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYGNHGRGT 408 (697)
T ss_pred HHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHH
Confidence 999999999999999999999997 999999999999999999999999999999995 589999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh-CCCCCCCceeEEEECCEEEEEEecCCCCcchHH
Q 010642 320 LGERVIEHLIELK-AQESGDYVLLLNLYSSVGDWEKVKELREFMNE-KGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINE 397 (505)
Q Consensus 320 ~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (505)
+|.++|++|.+.+ .|+..+|..++.+|++.|++++|.++|+.|.+ .|+.|+..++..++ ..+...++.++
T Consensus 409 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li--------~~l~r~G~~~e 480 (697)
T PLN03081 409 KAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI--------ELLGREGLLDE 480 (697)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH--------HHHHhcCCHHH
Confidence 9999999999987 77889999999999999999999999999976 69999876665443 33446788888
Q ss_pred HHHHHHHHHHHHHHcCcccccccccccCChhhhhhhhhhhhhHHHHHHHhccCCCCCeEEEEecccccCchhhhhHhhhc
Q 010642 398 IYQMLDEINKQLKIAGYVAEITSELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSG 477 (505)
Q Consensus 398 ~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (505)
|.+.+ ++.++.|+...+..-+..+.+.+.+..-.......+++.+......+.+.+.+..+|+..+|.+++..
T Consensus 481 A~~~~-------~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 481 AYAMI-------RRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred HHHHH-------HHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 87644 34588888865433222222221111111111112344444444566677889999999999999988
Q ss_pred ccCceE-------EEecCCccccccCCccCCC
Q 010642 478 VYNREV-------IIRDRLRFHHFREGRCSCN 502 (505)
Q Consensus 478 ~~~~~~-------~~~~~~~~h~~~~g~~~~~ 502 (505)
|..+.+ .+.-.+..|.|..|+.+..
T Consensus 554 m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~ 585 (697)
T PLN03081 554 LKRKGLSMHPACTWIEVKKQDHSFFSGDRLHP 585 (697)
T ss_pred HHHcCCccCCCeeEEEECCeEEEEccCCCCCc
Confidence 876542 3556678899998876643
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.3e-63 Score=530.92 Aligned_cols=472 Identities=22% Similarity=0.382 Sum_probs=421.3
Q ss_pred CcccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 010642 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEK 80 (505)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 80 (505)
||++|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..+++.|+.||..++|+||.+|+++|+
T Consensus 158 li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 237 (857)
T PLN03077 158 LVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHH
Q 010642 81 SFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYIS 160 (505)
Q Consensus 81 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 160 (505)
+++|.++|++|+++|.++||+||.+|++.|++++|+++|++|.. .|+.||..||+.++.+|++.|+.+.|.+++..+.
T Consensus 238 ~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~--~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~ 315 (857)
T PLN03077 238 VVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE--LSVDPDLMTITSVISACELLGDERLGREMHGYVV 315 (857)
T ss_pred HHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010642 161 EHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240 (505)
Q Consensus 161 ~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 240 (505)
+.|+.||..+||+|+.+|+++|++++|.++|++|.+||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+
T Consensus 316 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~l 395 (857)
T PLN03077 316 KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395 (857)
T ss_pred HhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhH
Q 010642 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTL 320 (505)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 320 (505)
+.+|++.|++++|.++++.+.+. |+.|+..+|++||++|+++|++++|.++|++|. .||..+|+++|.+|.+.|+.++
T Consensus 396 l~a~~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~e 473 (857)
T PLN03077 396 LSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFE 473 (857)
T ss_pred HHHHhccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHH
Confidence 99999999999999999999986 999999999999999999999999999999995 5799999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCceeEEEECCEE------------------
Q 010642 321 GERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVV------------------ 382 (505)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~------------------ 382 (505)
|..+|++|.+.-+|+..+|..++.+|++.|..+.+.+++..|.+.|+.++......+++...
T Consensus 474 A~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d 553 (857)
T PLN03077 474 ALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKD 553 (857)
T ss_pred HHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCC
Confidence 99999999876677888998888888888888888888888888887765443322211100
Q ss_pred ----EEEEecCCCCcchHHHHHHHHHHHHHHHHcCcccccccccccCChhhhhhhh---hhhhhHHHHHHHhccCCCCCe
Q 010642 383 ----HEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITSELHNLGAEEKGNAL---SYHSEKLAIAFGVLATPPGTT 455 (505)
Q Consensus 383 ----~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~~~ 455 (505)
..++.++..|++.++|.+ ++++|.+.|+.||..++..-+..+.+.+.+ ....+.+...+|+.++..+..
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~----lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~ 629 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVE----LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHH----HHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 012345567888888876 555678899999998876544444433222 223344444678877776544
Q ss_pred EEEEecccccCchhhhhHhhhcccCc
Q 010642 456 IRVAKNLRICVDCHNFAKVLSGVYNR 481 (505)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (505)
++++.+.++|+.++|.++|.+|+.+
T Consensus 630 -~lv~~l~r~G~~~eA~~~~~~m~~~ 654 (857)
T PLN03077 630 -CVVDLLGRAGKLTEAYNFINKMPIT 654 (857)
T ss_pred -HHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 7899999999999999999999743
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.5e-59 Score=490.68 Aligned_cols=446 Identities=17% Similarity=0.213 Sum_probs=380.2
Q ss_pred CChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCC----CCChhHHHHHH
Q 010642 28 TNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIP----QRDTVAWNVLI 103 (505)
Q Consensus 28 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li 103 (505)
||..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||..+||+||
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999998 48999999999
Q ss_pred HHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHH--cCCCCchhHHHHHHHHHHhc
Q 010642 104 SCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISE--HGYGSKMNLCNSLIAMYSKC 181 (505)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~--~~~~~~~~~~~~l~~~y~~~ 181 (505)
.+|++.|++++|+++|++|.. .|+.||..||+.++.+|++.|++++|.++|.+|.+ .|+.||..+|++|+.+|+++
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~--~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~ 592 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRS--KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC
Confidence 999999999999999999999 89999999999999999999999999999999987 67899999999999999999
Q ss_pred CCHHHHHHHHhcCCC----CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010642 182 GSLGMAFEVFKGMPE----KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFL 257 (505)
Q Consensus 182 g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 257 (505)
|++++|.++|+.|.+ |+..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|
T Consensus 593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999974 5779999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc-C
Q 010642 258 DRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM---GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELK-A 333 (505)
Q Consensus 258 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~ 333 (505)
++|.+. |+.|+..+|++||.+|+++|++++|.++|++| ++.||..+|++||.+|++.|++++|.++|++|.+.+ .
T Consensus 673 ~eM~k~-G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 673 QDARKQ-GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred HHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 999986 99999999999999999999999999999999 889999999999999999999999999999999887 6
Q ss_pred CCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCceeEEEECC-------------EEEEEEecC--CCCcchHHH
Q 010642 334 QESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKG-------------VVHEFVVDD--VSHPRINEI 398 (505)
Q Consensus 334 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~--~~~~~~~~~ 398 (505)
|+..+|..|+.+|++.|++++|.+++++|.+.|+.|+..++..++.- .+..|-.+. ......++|
T Consensus 752 Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~A 831 (1060)
T PLN03218 752 PNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWA 831 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHH
Confidence 78899999999999999999999999999999999987654433210 000111110 011122334
Q ss_pred HHHHHHHHHHHHHcCcccccccccccCChhhhhhhhhhhhhHHHHHHHhccCCCC--CeEEEEecccccCchhhhhHhhh
Q 010642 399 YQMLDEINKQLKIAGYVAEITSELHNLGAEEKGNALSYHSEKLAIAFGVLATPPG--TTIRVAKNLRICVDCHNFAKVLS 476 (505)
Q Consensus 399 ~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 476 (505)
+ .++++|.+.|+.||..++...+.-..+.+.. .....+-..+++.+.+++ ....+++.+ |..-++|..++.
T Consensus 832 l----~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~-~~~~~m~~~m~~~~~~~~~~~y~~Li~g~--~~~~~~A~~l~~ 904 (1060)
T PLN03218 832 L----MVYRETISAGTLPTMEVLSQVLGCLQLPHDA-TLRNRLIENLGISADSQKQSNLSTLVDGF--GEYDPRAFSLLE 904 (1060)
T ss_pred H----HHHHHHHHCCCCCCHHHHHHHHHHhcccccH-HHHHHHHHHhccCCCCcchhhhHHHHHhh--ccChHHHHHHHH
Confidence 4 4777889999999987665433111111111 122333345666666554 222344443 112357888888
Q ss_pred cccCceE
Q 010642 477 GVYNREV 483 (505)
Q Consensus 477 ~~~~~~~ 483 (505)
.|..+.|
T Consensus 905 em~~~Gi 911 (1060)
T PLN03218 905 EAASLGV 911 (1060)
T ss_pred HHHHcCC
Confidence 8876554
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.5e-57 Score=472.63 Aligned_cols=436 Identities=15% Similarity=0.206 Sum_probs=383.0
Q ss_pred CcccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 010642 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEK 80 (505)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 80 (505)
||.+|++.|++++|+.+|++|.+.|+.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCC----CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHH
Q 010642 81 SFEACKLFDEIPQ----RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIH 156 (505)
Q Consensus 81 ~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~ 156 (505)
+++|.++|+.|.+ ||..+||.||.+|++.|++++|.++|++|.....++.||..||++++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999964 899999999999999999999999999997533578999999999999999999999999999
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 010642 157 RYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP----EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP 232 (505)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 232 (505)
+.|.+.|++|+..+|+.++.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999997 5799999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC---CCCCCHHHHHHHH
Q 010642 233 DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM---GVKPDSTIWRTLL 309 (505)
Q Consensus 233 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll 309 (505)
|..+|+.++.+|++.|++++|.++|++|.+. |+.||..+|++||.+|++.|++++|.++|++| |+.||..+|++++
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 9999999999999999999999999999986 99999999999999999999999999999999 8999999999999
Q ss_pred HHHHhcCchhHHHHHHHHHHHhc-CCCCchHHHHHHHHHh----CC-------------------CHHHHHHHHHHHHhC
Q 010642 310 GACRIHKHVTLGERVIEHLIELK-AQESGDYVLLLNLYSS----VG-------------------DWEKVKELREFMNEK 365 (505)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~----~g-------------------~~~~a~~~~~~m~~~ 365 (505)
.+|.+.|+++.|.+++++|.+.+ .++..+|..|+.+|.+ ++ ..++|..+|++|.+.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 99999999999999999999988 6677899999876432 21 236799999999999
Q ss_pred CCCCCCceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCccccccccc---ccCChhhhhhhhhhhhhHHH
Q 010642 366 GLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITSEL---HNLGAEEKGNALSYHSEKLA 442 (505)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~---~~~~~~~~~~~~~~~~~~la 442 (505)
|+.|+..++..++... ...+. .....+++..|...+..|+..+.. +..+. ...+.+..+.|.
T Consensus 842 Gi~Pd~~T~~~vL~cl--------~~~~~----~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~-~~~~A~~l~~em-- 906 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCL--------QLPHD----ATLRNRLIENLGISADSQKQSNLSTLVDGFGE-YDPRAFSLLEEA-- 906 (1060)
T ss_pred CCCCCHHHHHHHHHHh--------ccccc----HHHHHHHHHHhccCCCCcchhhhHHHHHhhcc-ChHHHHHHHHHH--
Confidence 9999977665443221 01111 234455666666667666665433 32221 112344445544
Q ss_pred HHHHhccCCC
Q 010642 443 IAFGVLATPP 452 (505)
Q Consensus 443 ~~~~~~~~~~ 452 (505)
...|+.++..
T Consensus 907 ~~~Gi~p~~~ 916 (1060)
T PLN03218 907 ASLGVVPSVS 916 (1060)
T ss_pred HHcCCCCCcc
Confidence 3567877654
No 7
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.95 E-value=2.1e-28 Score=189.90 Aligned_cols=106 Identities=53% Similarity=0.919 Sum_probs=94.1
Q ss_pred ceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCcccccccccccCChhhh--------hhhhhhhhhHHHH
Q 010642 372 GCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITSELHNLGAEEK--------GNALSYHSEKLAI 443 (505)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~--------~~~~~~~~~~la~ 443 (505)
+++|+.+ |.|++|+.+||+. ++..++...||.|+...+.+++.++++ +..+.+|||+||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 4678665 8999999999987 355567788999999999887766554 5688999999999
Q ss_pred HHHhccCCCCCeEEEEecc-cccCchhhhhHhhhcccCceEEEecCCcccccc
Q 010642 444 AFGVLATPPGTTIRVAKNL-RICVDCHNFAKVLSGVYNREVIIRDRLRFHHFR 495 (505)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 495 (505)
+||++++ +++||+ |+|+|||+|+|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 889998 999999999999999999999999999999996
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=9.2e-24 Score=229.91 Aligned_cols=349 Identities=13% Similarity=0.052 Sum_probs=200.4
Q ss_pred cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHH
Q 010642 8 SSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKL 87 (505)
Q Consensus 8 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 87 (505)
.|++++|...|+++...+ +.+..++..+...+...|+.++|...++.+.+.+ +.+...+..++..|.+.|++++|..+
T Consensus 512 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 589 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAI 589 (899)
T ss_pred CCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHH
Confidence 344444444444443332 1133334444444444444444444444444332 22333444444444445555555554
Q ss_pred HhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCC
Q 010642 88 FDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGY 164 (505)
Q Consensus 88 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~ 164 (505)
++.+.+ .+...|..+...|.+.|++++|+..|+++.. . .+.+...+..+..++...|++++|..+++.+.+..
T Consensus 590 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 665 (899)
T TIGR02917 590 LNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA--L-QPDSALALLLLADAYAVMKNYAKAITSLKRALELK- 665 (899)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 444432 2344555555555555555555555555544 1 12233444455555555555555555555555442
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010642 165 GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVL 241 (505)
Q Consensus 165 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 241 (505)
+.+..++..++..+...|++++|..+++.+.+ .+...+..+...+...|++++|.+.|+++... .|+..++..+.
T Consensus 666 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 743 (899)
T TIGR02917 666 PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLH 743 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHH
Confidence 33445555555555555555555555555542 23445555666666666666666666666654 34445556666
Q ss_pred HHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCC-CCHHHHHHHHHHHHhcCchh
Q 010642 242 SACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVK-PDSTIWRTLLGACRIHKHVT 319 (505)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~ 319 (505)
.++.+.|++++|.+.++.+.+ ..+.+...+..+...|.+.|++++|.+.|+++ ... ++..+++.+...+...|+ +
T Consensus 744 ~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~ 820 (899)
T TIGR02917 744 RALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-P 820 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-H
Confidence 667777777777777777665 33445666777777777777777777777776 222 356677777777777777 6
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 010642 320 LGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGL 367 (505)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 367 (505)
+|+..++++.+..|.++..+..+..+|...|++++|.++++++.+.+.
T Consensus 821 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 821 RALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 677777777777777777777777888888888888888888877654
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=4.3e-23 Score=224.63 Aligned_cols=352 Identities=11% Similarity=0.014 Sum_probs=310.8
Q ss_pred ccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHH
Q 010642 3 RAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSF 82 (505)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 82 (505)
..+.+.|++++|...|+++...+ +.+...+..+...+...|++++|..+++.+.+.. +.+..+|..+...|.+.|+++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 618 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLN 618 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 35667899999999999998875 3466778889999999999999999999998764 567889999999999999999
Q ss_pred HHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHH
Q 010642 83 EACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYI 159 (505)
Q Consensus 83 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~ 159 (505)
+|...|+.+.+ .+...|..+...|.+.|++++|...|+++.. ..+.+..++..+...+...|++++|.++++.+
T Consensus 619 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 619 KAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE---LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998754 4677899999999999999999999999976 23445788899999999999999999999999
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 010642 160 SEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP--EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTF 237 (505)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 237 (505)
.+.. +.+..++..+...|.+.|++++|...|+.+. .|+..++..++..+.+.|++++|.+.++++.... +.+...+
T Consensus 696 ~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~ 773 (899)
T TIGR02917 696 QKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLR 773 (899)
T ss_pred HhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 9886 6678889999999999999999999999875 3555778889999999999999999999998863 3467788
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhc
Q 010642 238 TGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIH 315 (505)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 315 (505)
..+...|...|+.++|..+|+++.+. .+++...++.+...+.+.|+ .+|+.+++++ ...| +..++..+...+...
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEK 850 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 89999999999999999999999873 45677889999999999999 8899999988 4444 456788888999999
Q ss_pred CchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 316 KHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 316 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
|++++|...++++.+.+|.++.++..++.+|.+.|++++|.+++++|.+
T Consensus 851 g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 851 GEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999863
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=9.9e-21 Score=185.71 Aligned_cols=292 Identities=12% Similarity=0.052 Sum_probs=201.5
Q ss_pred HHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC---HHHHHHHHHHHHhccC
Q 010642 75 YSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD---DVTCLLVLQACAHLGA 148 (505)
Q Consensus 75 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd---~~t~~~ll~~~~~~~~ 148 (505)
+...|++++|...|.++.+ .+..+|..+...+...|++++|..+++.+.. .+..++ ..++..+...+...|+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLS--RPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 4455666666666666653 2344566666666666667777666666655 221111 1345556666666677
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC--------hhHHHHHHHHHHhCCChHHHHH
Q 010642 149 LEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKD--------VVSWSAMISGLAMNGHGRDAIE 220 (505)
Q Consensus 149 ~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~--------~~~~~~li~~~~~~g~~~~A~~ 220 (505)
++.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 777777776666542 3455666667777777777777777776664321 1134556667778888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCC
Q 010642 221 SFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVK 299 (505)
Q Consensus 221 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 299 (505)
.|+++.+.. +.+...+..+...+.+.|++++|.++++++... ........++.++.+|.+.|++++|.+.++++ ...
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888887643 123456667777888888888888888888753 21112356778888888889999998888887 556
Q ss_pred CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHh---CCCHHHHHHHHHHHHhCCCCCCCc
Q 010642 300 PDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSS---VGDWEKVKELREFMNEKGLQTTPG 372 (505)
Q Consensus 300 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 372 (505)
|+...+..+...+.+.|++++|..+++++.+..|++ ..+..++..+.. .|+.+++..++++|.+++++++|.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~-~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSL-RGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCH-HHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 777777788888899999999999999988887765 466666666654 558999999999999999888886
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=6.8e-20 Score=179.77 Aligned_cols=289 Identities=15% Similarity=0.086 Sum_probs=242.0
Q ss_pred HHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCC-C------hhHHHHHHHHHHHC
Q 010642 37 IKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQR-D------TVAWNVLISCYIRN 109 (505)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~~ 109 (505)
...+...|++++|...+.++++.+ +.+..++..+...|...|++++|..+++.+... + ...+..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334567799999999999999875 446678999999999999999999999987652 1 25688899999999
Q ss_pred CChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCc----hhHHHHHHHHHHhcCCHH
Q 010642 110 QRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSK----MNLCNSLIAMYSKCGSLG 185 (505)
Q Consensus 110 g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~----~~~~~~l~~~y~~~g~~~ 185 (505)
|++++|+.+|+++.+ . .+++..++..++..+...|++++|.+.+..+.+.+..+. ...+..+...+.+.|+++
T Consensus 121 g~~~~A~~~~~~~l~--~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 121 GLLDRAEELFLQLVD--E-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CCHHHHHHHHHHHHc--C-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 999999999999976 2 345678899999999999999999999999988753322 224567888899999999
Q ss_pred HHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 010642 186 MAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 186 ~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (505)
+|...|+++.+ .+...+..+...|.+.|++++|.++|+++...+......++..+..+|...|++++|...++++.+
T Consensus 198 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 198 AARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999998763 345678888899999999999999999998754333346788899999999999999999999986
Q ss_pred hcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHHHHHHHHHHHHh---cCchhHHHHHHHHHHHhc
Q 010642 263 DFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDSTIWRTLLGACRI---HKHVTLGERVIEHLIELK 332 (505)
Q Consensus 263 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~ 332 (505)
. .|+...+..++..+.+.|++++|.++++++ ...|+..+++.++..+.. .|+.+++..+++++.+..
T Consensus 278 ~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 278 E---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred h---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 4 467777788999999999999999999987 667999999988877664 568999999999988755
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=4.4e-19 Score=183.37 Aligned_cols=352 Identities=12% Similarity=0.017 Sum_probs=280.4
Q ss_pred cchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Q 010642 4 AYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFE 83 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 83 (505)
.|.+.|++++|+..|++.+.. .|+...|..+..++...|++++|...+..+++.. +.+...+..+...|...|++++
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 466789999999999999875 5777889999999999999999999999999876 4467788889999999999999
Q ss_pred HHHHHhcCCC---------------------------------CChhHHHHHHHH-------------------------
Q 010642 84 ACKLFDEIPQ---------------------------------RDTVAWNVLISC------------------------- 105 (505)
Q Consensus 84 A~~~~~~~~~---------------------------------~~~~~~~~li~~------------------------- 105 (505)
|+.-|..... ++..++..+...
T Consensus 213 A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (615)
T TIGR00990 213 ALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGN 292 (615)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccccc
Confidence 9875543210 000011111000
Q ss_pred -H----------HHCCChhHHHHHHHHchhccCC-CCC-CHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHH
Q 010642 106 -Y----------IRNQRTRDALCLFDNLNREESG-CKP-DDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCN 172 (505)
Q Consensus 106 -~----------~~~g~~~~A~~~~~~m~~~~~~-~~p-d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 172 (505)
+ ...+++++|++.|++... .+ ..| +...+..+...+...|++++|...++..++.. |.....|.
T Consensus 293 ~~~~l~~~~~e~~~~~~y~~A~~~~~~al~--~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~ 369 (615)
T TIGR00990 293 GQLQLGLKSPESKADESYEEAARAFEKALD--LGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYI 369 (615)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHH
Confidence 0 113578899999999876 33 234 34667778888889999999999999999874 44577888
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 010642 173 SLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP-DDQTFTGVLSACSHCG 248 (505)
Q Consensus 173 ~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g 248 (505)
.+...|...|++++|...|++..+ .+...|..+...|...|++++|+..|++.... .| +...+..+...+.+.|
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g 447 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEG 447 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCC
Confidence 999999999999999999997653 46778999999999999999999999999885 34 4566778888999999
Q ss_pred CHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCH-H-------HHHHHHHHHHhcCchh
Q 010642 249 LVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDS-T-------IWRTLLGACRIHKHVT 319 (505)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~ll~~~~~~g~~~ 319 (505)
++++|+..|++..+. .+.+...++.+...+...|++++|.+.|++. .+.|+. . .++..+..+...|+++
T Consensus 448 ~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~ 525 (615)
T TIGR00990 448 SIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFI 525 (615)
T ss_pred CHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHH
Confidence 999999999999863 3445778899999999999999999999987 444431 1 1222223344569999
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 320 LGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
+|...+++..+.+|.+...+..++..|...|++++|.+.|++..+.
T Consensus 526 eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 526 EAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999988888999999999999999999999988654
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=1.3e-20 Score=177.66 Aligned_cols=349 Identities=12% Similarity=0.107 Sum_probs=301.0
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHhCCCHHH
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQ-LMTTLMDLYSTFEKSFE 83 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~ 83 (505)
+-..|++++|+.+++.|++...+ ....|..+..++...|+.+.|.+.|...++.+ |+.. +.+.+....-..|++++
T Consensus 126 ~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~e 202 (966)
T KOG4626|consen 126 LKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEE 202 (966)
T ss_pred HHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccch
Confidence 45679999999999999986432 56789999999999999999999999998764 4433 44556666667899999
Q ss_pred HHHHHhcCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC-HHHHHHHHHHHHhccChHHHHHHHHHH
Q 010642 84 ACKLFDEIPQ--R-DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD-DVTCLLVLQACAHLGALEFGEKIHRYI 159 (505)
Q Consensus 84 A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~ 159 (505)
|...+.+..+ | =.++|+.|...+-.+|+...|++-|++..+ +.|+ ...|..|...+...+.++.|...+.++
T Consensus 203 a~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk----ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rA 278 (966)
T KOG4626|consen 203 AKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK----LDPNFLDAYINLGNVYKEARIFDRAVSCYLRA 278 (966)
T ss_pred hHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc----CCCcchHHHhhHHHHHHHHhcchHHHHHHHHH
Confidence 9998877655 3 257899999999999999999999999966 6666 468899999999999999999999988
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-H
Q 010642 160 SEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE--KD-VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDD-Q 235 (505)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~ 235 (505)
.... +....++..+...|...|.+|-|+..|++..+ |+ +..|+.|..++-..|+..+|.+.|.+.... .|+. .
T Consensus 279 l~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~had 355 (966)
T KOG4626|consen 279 LNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHAD 355 (966)
T ss_pred HhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHH
Confidence 8764 55678888899999999999999999998864 43 468999999999999999999999999874 4554 5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC-cchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCH-HHHHHHHHHH
Q 010642 236 TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN-IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDS-TIWRTLLGAC 312 (505)
Q Consensus 236 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~ 312 (505)
..+.|...+...|.+++|..+|....+ +.|. ...++.|...|-++|++++|...+++. .++|+. ..|+.+...|
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ 432 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTY 432 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHH
Confidence 788899999999999999999999875 4455 567889999999999999999999988 889984 5899999999
Q ss_pred HhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 313 RIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
...|+.+.|.+.+.+++...|.-...+..|...|-..|+..+|..-++...+..
T Consensus 433 ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 433 KEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 999999999999999999999988999999999999999999999999877643
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=1.9e-18 Score=178.11 Aligned_cols=323 Identities=11% Similarity=0.033 Sum_probs=239.7
Q ss_pred ccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHH
Q 010642 3 RAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSF 82 (505)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 82 (505)
..+.+.|++++|+.+++..+..... +...+..++.++...|++++|.+.++.+++.. +.+...+..+...+...|+++
T Consensus 50 ~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~ 127 (656)
T PRK15174 50 IACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYA 127 (656)
T ss_pred HHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHH
Confidence 3456788889999988888876544 34455556666677889999999998888775 446677888888888889999
Q ss_pred HHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHH
Q 010642 83 EACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYI 159 (505)
Q Consensus 83 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~ 159 (505)
+|...|++..+ .+...|..+...+...|++++|...++.+.. ..|+.......+..+...|++++|...++.+
T Consensus 128 ~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~----~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 128 TVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ----EVPPRGDMIATCLSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99888888754 3567788888888999999999988887755 2233222222233467788899998888888
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHH----HHHHHHHHHHCCCCC
Q 010642 160 SEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRD----AIESFGAMQRAGVFP 232 (505)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p 232 (505)
.+....++......+..++.+.|++++|...|++..+ .+...+..+...|.+.|++++ |...|++..+. .|
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P 281 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NS 281 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CC
Confidence 7764334444555567788888999999888887653 356677788888888888875 78888888874 34
Q ss_pred C-HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHHHH-HHHH
Q 010642 233 D-DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDSTIW-RTLL 309 (505)
Q Consensus 233 ~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~ll 309 (505)
+ ...+..+...+...|++++|...+++.... -+.+...+..+...|.+.|++++|.+.++++ ...|+...+ ..+.
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a 359 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAA 359 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 4 457778888888889999999888888763 2223456667788888889999998888887 455654433 3345
Q ss_pred HHHHhcCchhHHHHHHHHHHHhcCCC
Q 010642 310 GACRIHKHVTLGERVIEHLIELKAQE 335 (505)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~~~~~ 335 (505)
.++...|+.++|...++++.+..|.+
T Consensus 360 ~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 67788899999999999888887765
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.85 E-value=9.7e-18 Score=184.58 Aligned_cols=397 Identities=11% Similarity=0.028 Sum_probs=273.6
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCC-hhHH------------HHH
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLD-SQLM------------TTL 71 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~------------~~l 71 (505)
+...|++++|+..|++.++... .+...+..+..++.+.|++++|...++++++...... ...+ ..+
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 5568999999999999988642 2677888888999999999999999999988653221 1112 122
Q ss_pred HHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC-HHHHHHHHH------
Q 010642 72 MDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD-DVTCLLVLQ------ 141 (505)
Q Consensus 72 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~t~~~ll~------ 141 (505)
...+.+.|++++|+..|++..+ .+..++..+...+...|++++|++.|++..+ ..|+ ...+..+..
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~----~~p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALR----MDPGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHhcC
Confidence 4457788999999999998764 3567788889999999999999999999876 2333 333332222
Q ss_pred ------------------------------------HHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 010642 142 ------------------------------------ACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLG 185 (505)
Q Consensus 142 ------------------------------------~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~ 185 (505)
.+...|++++|.+.++++++.. |.++.++..+...|.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 2334566777777777776654 445566666777777777777
Q ss_pred HHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHhccCCHHHH
Q 010642 186 MAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQ---------TFTGVLSACSHCGLVDEG 253 (505)
Q Consensus 186 ~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~~~~~~g~~~~a 253 (505)
+|...|+++.+ .+...+..+...+...++.++|+..++.+......++.. .+......+...|+.++|
T Consensus 513 ~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 513 QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 77777776532 234444444445566677777777766653322222211 122345566777888888
Q ss_pred HHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHh
Q 010642 254 MMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIEL 331 (505)
Q Consensus 254 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 331 (505)
..+++. .+++...+..+...+.+.|++++|++.|++. ...| +...+..+...+...|++++|++.++.+.+.
T Consensus 593 ~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 593 EALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 887762 2345566778889999999999999999988 5555 4678888999999999999999999999988
Q ss_pred cCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHH
Q 010642 332 KAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKI 411 (505)
Q Consensus 332 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 411 (505)
.|+++..+..+..++...|++++|.++++++....-..++.....++.. ....-....++.++|...+++. |..
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~---~~a~~~~~~G~~~~A~~~y~~A---l~~ 740 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLR---DAARFEAQTGQPQQALETYKDA---MVA 740 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHH---HHHHHHHHcCCHHHHHHHHHHH---Hhh
Confidence 8888888889999999999999999999998765432222110000000 0001123456777887777665 344
Q ss_pred cCcccccc
Q 010642 412 AGYVAEIT 419 (505)
Q Consensus 412 ~g~~p~~~ 419 (505)
.|+.|...
T Consensus 741 ~~~~~~~p 748 (1157)
T PRK11447 741 SGITPTRP 748 (1157)
T ss_pred cCCCCCCC
Confidence 56665543
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=2.3e-17 Score=170.25 Aligned_cols=351 Identities=11% Similarity=0.023 Sum_probs=276.2
Q ss_pred hhcCCchHHHHHHHHHHhCC--CCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Q 010642 6 SMSSSPEEGFYLFEKMRQKR--IPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFE 83 (505)
Q Consensus 6 ~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 83 (505)
.+..+++.---+|....+.. -.-+......++..+.+.|+++.|..+++..+..... +......++......|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHH
Confidence 34445554444444433321 1113344566777888999999999999999887644 45556666677778999999
Q ss_pred HHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC-HHHHHHHHHHHHhccChHHHHHHHHHH
Q 010642 84 ACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD-DVTCLLVLQACAHLGALEFGEKIHRYI 159 (505)
Q Consensus 84 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~ 159 (505)
|...|+++.. .+...|..+...+.+.|++++|+..|++... +.|+ ...+..+...+...|++++|...+..+
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~----l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWL----AFSGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 9999999865 3677899999999999999999999999977 4454 567788889999999999999999988
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 010642 160 SEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEK----DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQ 235 (505)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 235 (505)
.... +.+...+..+ ..+.+.|++++|...++.+.+. +...+..+...+.+.|++++|+..|+++..... .+..
T Consensus 171 ~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~ 247 (656)
T PRK15174 171 AQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAA 247 (656)
T ss_pred HHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHH
Confidence 7764 3334444444 3488899999999999987643 233445566788999999999999999997642 2456
Q ss_pred HHHHHHHHHhccCCHHH----HHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHH
Q 010642 236 TFTGVLSACSHCGLVDE----GMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLL 309 (505)
Q Consensus 236 t~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll 309 (505)
.+..+...+...|++++ |...|++..+. .+.+...+..+...+.+.|++++|...+++. ...|+ ...+..+.
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La 325 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 77788889999999986 89999999863 2335678889999999999999999999988 55564 55777788
Q ss_pred HHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 310 GACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
.++...|++++|...++++.+..|.+...+..+..++...|++++|...+++..+..
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999998877666677889999999999999999987653
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=1.8e-18 Score=163.33 Aligned_cols=339 Identities=14% Similarity=0.107 Sum_probs=290.1
Q ss_pred ccchhcCCchHHHHHHHHHHhCCCCCChhhHHHH-HHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCH
Q 010642 3 RAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFA-IKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKS 81 (505)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 81 (505)
.++...|+.+.|...|.+.++. .|+.+...+- .......|++.+|...+.++++... -=..+|+.|...+-..|++
T Consensus 158 ~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei 234 (966)
T KOG4626|consen 158 AALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEI 234 (966)
T ss_pred HHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchH
Confidence 4677899999999999999885 5666544433 3344567999999999999988752 2456899999999999999
Q ss_pred HHHHHHHhcCCCCC---hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC-HHHHHHHHHHHHhccChHHHHHHHH
Q 010642 82 FEACKLFDEIPQRD---TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD-DVTCLLVLQACAHLGALEFGEKIHR 157 (505)
Q Consensus 82 ~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~ 157 (505)
..|+.-|++...-| ..+|-.|...|...+.+++|+..|.+... ..|+ ...+..+...|-..|.++.|...++
T Consensus 235 ~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~----lrpn~A~a~gNla~iYyeqG~ldlAI~~Yk 310 (966)
T KOG4626|consen 235 WLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN----LRPNHAVAHGNLACIYYEQGLLDLAIDTYK 310 (966)
T ss_pred HHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh----cCCcchhhccceEEEEeccccHHHHHHHHH
Confidence 99999999987633 56899999999999999999999999865 5565 5678888888899999999999999
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 010642 158 YISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDD 234 (505)
Q Consensus 158 ~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 234 (505)
+.++.. |.-+..|+.|.+++-..|++.+|.+.|.+... .-..+.+.|...|...|..++|..+|....+ +.|.-
T Consensus 311 ral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~ 387 (966)
T KOG4626|consen 311 RALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEF 387 (966)
T ss_pred HHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhh
Confidence 999875 55678999999999999999999999998763 3456889999999999999999999999887 55654
Q ss_pred -HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC-cchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHH
Q 010642 235 -QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN-IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLG 310 (505)
Q Consensus 235 -~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~ 310 (505)
..++.|...|-+.|++++|+..|++.. .+.|+ ...|+.+...|-..|+.+.|.+.+.+. .+.|. ....+.|.+
T Consensus 388 aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLas 464 (966)
T KOG4626|consen 388 AAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLAS 464 (966)
T ss_pred hhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHH
Confidence 578899999999999999999999997 56787 568999999999999999999999888 77886 458889999
Q ss_pred HHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHH
Q 010642 311 ACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEK 354 (505)
Q Consensus 311 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 354 (505)
.+...|+..+|++.++..+++.|+.+..|..++...---.+|.+
T Consensus 465 i~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 465 IYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 99999999999999999999999999999998887765555554
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.83 E-value=1.2e-16 Score=175.93 Aligned_cols=350 Identities=11% Similarity=0.035 Sum_probs=281.6
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHH
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEA 84 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 84 (505)
+.+.|++++|+..|+++++... .+...+..+...+...|++++|.+.++++++.. +.+...+..+...|. .++.++|
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A 437 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKA 437 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHH
Confidence 4578999999999999998743 356677888899999999999999999999875 445667777887775 4678999
Q ss_pred HHHHhcCCCCC------------hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCC-CHHHHHHHHHHHHhccChHH
Q 010642 85 CKLFDEIPQRD------------TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKP-DDVTCLLVLQACAHLGALEF 151 (505)
Q Consensus 85 ~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-d~~t~~~ll~~~~~~~~~~~ 151 (505)
...++.++... ...+..+...+...|++++|++.|++..+ ..| +...+..+...+.+.|++++
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~----~~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA----LDPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHH
Confidence 99998876421 23456677889999999999999999977 445 45677788889999999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC----hh---------HHHHHHHHHHhCCChHHH
Q 010642 152 GEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKD----VV---------SWSAMISGLAMNGHGRDA 218 (505)
Q Consensus 152 a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~----~~---------~~~~li~~~~~~g~~~~A 218 (505)
|...++++.+.. +.++..+..+...+.+.|+.++|...++.+.... .. .+..+...+...|+.++|
T Consensus 514 A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 514 ADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 999999998764 5566667677777889999999999999886421 11 123456678899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-C
Q 010642 219 IESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-G 297 (505)
Q Consensus 219 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 297 (505)
..+++. .+++...+..+...+.+.|+.++|+..|++..+. -+.+...+..++..|...|++++|++.++.. .
T Consensus 593 ~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 593 EALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 999882 2345566777888999999999999999999873 3445778899999999999999999999988 4
Q ss_pred CCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCc------hHHHHHHHHHhCCCHHHHHHHHHHHH-hCCCCC
Q 010642 298 VKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESG------DYVLLLNLYSSVGDWEKVKELREFMN-EKGLQT 369 (505)
Q Consensus 298 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~~ 369 (505)
..|+ ...+..+..++...|++++|.++++++.+..|+++. .+..+...+...|++++|.+.+++.. ..|+.|
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 5554 556777888889999999999999999987754432 55567899999999999999999875 345544
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=3.4e-16 Score=164.93 Aligned_cols=355 Identities=8% Similarity=-0.015 Sum_probs=255.7
Q ss_pred cchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Q 010642 4 AYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFE 83 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 83 (505)
.....|+.++|+.++.+..... +.+...+..+..++...|++++|.++++.+++.. +.+...+..+...+...|+.++
T Consensus 24 ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 24 IALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3456788888888888887632 3344567777788888888888888888887764 4456667777788888888888
Q ss_pred HHHHHhcCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCH-HHHHHHHHHHHhccChH---------
Q 010642 84 ACKLFDEIPQ--R-DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDD-VTCLLVLQACAHLGALE--------- 150 (505)
Q Consensus 84 A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~-~t~~~ll~~~~~~~~~~--------- 150 (505)
|...+++..+ | +.. |..+...+...|+.++|+..++++.. ..|+. ..+..+..++...+..+
T Consensus 102 A~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~----~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 102 ALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP----RAPQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 8888887754 2 455 77788888888888888888888866 34443 33334444444334433
Q ss_pred -------------------------------------HHHHHHHHHHHc-CCCCchh-HH----HHHHHHHHhcCCHHHH
Q 010642 151 -------------------------------------FGEKIHRYISEH-GYGSKMN-LC----NSLIAMYSKCGSLGMA 187 (505)
Q Consensus 151 -------------------------------------~a~~i~~~~~~~-~~~~~~~-~~----~~l~~~y~~~g~~~~A 187 (505)
+|.+.++.+.+. ...|+.. .+ ...+.++...|++++|
T Consensus 177 ~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA 256 (765)
T PRK10049 177 NLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDV 256 (765)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 344444444433 1122211 11 1112344677999999
Q ss_pred HHHHhcCCCCC---hh-HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010642 188 FEVFKGMPEKD---VV-SWSAMISGLAMNGHGRDAIESFGAMQRAGVFP---DDQTFTGVLSACSHCGLVDEGMMFLDRM 260 (505)
Q Consensus 188 ~~~~~~m~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 260 (505)
+..|+.+.+.+ +. .-..+...|...|++++|+..|+++....... .......+..++...|++++|.++++.+
T Consensus 257 ~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~ 336 (765)
T PRK10049 257 ISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHT 336 (765)
T ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 99999987542 11 22225678999999999999999987643211 1244566677889999999999999999
Q ss_pred hhhcC----------CcCC---cchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHH
Q 010642 261 SKDFG----------ILPN---IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVI 325 (505)
Q Consensus 261 ~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 325 (505)
..... -.|+ ...+..+...+...|++++|++.++++ ...| +...+..+...+...|++++|++.+
T Consensus 337 ~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l 416 (765)
T PRK10049 337 INNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENEL 416 (765)
T ss_pred hhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 86311 0122 123456778889999999999999998 4445 5678888999999999999999999
Q ss_pred HHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 326 EHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 326 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
+++.+..|++...+..++..+...|++++|..+++++.+.
T Consensus 417 ~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 417 KKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998764
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.78 E-value=8.4e-16 Score=159.04 Aligned_cols=361 Identities=11% Similarity=-0.035 Sum_probs=266.3
Q ss_pred hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHH
Q 010642 32 ACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIR 108 (505)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 108 (505)
.+......+...|+++.|...|+++++. .|+...|..+...|.+.|++++|+..++...+ .+..+|..+..+|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3455667788899999999999999875 46788899999999999999999999998765 356789999999999
Q ss_pred CCChhHHHHHHHHchhccCCC---------------------------CC----CHHHHHHHH-----------------
Q 010642 109 NQRTRDALCLFDNLNREESGC---------------------------KP----DDVTCLLVL----------------- 140 (505)
Q Consensus 109 ~g~~~~A~~~~~~m~~~~~~~---------------------------~p----d~~t~~~ll----------------- 140 (505)
.|++++|+..|...... .+. .| .........
T Consensus 207 lg~~~eA~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 207 LGKYADALLDLTASCII-DGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred cCCHHHHHHHHHHHHHh-CCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 99999998766544320 000 00 000000000
Q ss_pred ----------HH------HHhccChHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-Ch
Q 010642 141 ----------QA------CAHLGALEFGEKIHRYISEHG--YGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE--K-DV 199 (505)
Q Consensus 141 ----------~~------~~~~~~~~~a~~i~~~~~~~~--~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~-~~ 199 (505)
.. ....+.+++|.+.++.+.+.+ .+.....++.+...|...|++++|...|++..+ | +.
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 00 011246788889999888765 233556788889999999999999999998763 3 35
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHH
Q 010642 200 VSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDL 279 (505)
Q Consensus 200 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 279 (505)
..|..+...+...|++++|+..|++..+... .+...+..+...+...|++++|...|++..+. .+.+...+..+...
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~ 442 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHH
Confidence 5788888999999999999999999987532 24578888888999999999999999999863 33356677788889
Q ss_pred HHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHH-------HHHHHHhCC
Q 010642 280 LGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVL-------LLNLYSSVG 350 (505)
Q Consensus 280 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~g 350 (505)
+.+.|++++|+..|++. ...| +...|+.+...+...|++++|+..+++..+..|.+...+.. ....+...|
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 99999999999999987 4455 46788889999999999999999999999998765443321 122344579
Q ss_pred CHHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHH
Q 010642 351 DWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINK 407 (505)
Q Consensus 351 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 407 (505)
++++|.+++++..+.. |+....+.. . .......+..++|...+++...
T Consensus 523 ~~~eA~~~~~kAl~l~--p~~~~a~~~---l----a~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 523 DFIEAENLCEKALIID--PECDIAVAT---M----AQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred hHHHHHHHHHHHHhcC--CCcHHHHHH---H----HHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999877653 322211110 0 1112345677777777766544
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=1.3e-14 Score=150.39 Aligned_cols=352 Identities=11% Similarity=0.038 Sum_probs=272.0
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHH
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTNP--FACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSF 82 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 82 (505)
..+.|++..|++.|++..+.. |+. ..+ .++..+...|+.++|...+++.+... +........+...|...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHH
Confidence 468999999999999999864 443 233 77788888899999999999987211 223333444466888899999
Q ss_pred HHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHH
Q 010642 83 EACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYI 159 (505)
Q Consensus 83 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~ 159 (505)
+|+++|+++.+ .+...+..++..|...++.++|++.++++.. ..|+...+..++..+...++..+|.+.++++
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~----~dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE----RDPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc----cCcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999875 2567778888999999999999999999966 5677666644444444456666699999999
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------------------------------------------
Q 010642 160 SEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE------------------------------------------- 196 (505)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~------------------------------------------- 196 (505)
.+.. |.+...+..++.+..+.|-...|.++..+-+.
T Consensus 196 l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 196 VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 9985 66788888888888888887777766654331
Q ss_pred --------CCh---hHHH----HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHh
Q 010642 197 --------KDV---VSWS----AMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMS 261 (505)
Q Consensus 197 --------~~~---~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (505)
+++ ..|. =.+-++...|++.++++.|+.+...|.+....+-..+.++|...+.+++|..+++++.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 001 0111 1244677889999999999999988866455678889999999999999999999997
Q ss_pred hhcC----CcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CC-------------CCC---HHHHHHHHHHHHhcCchhH
Q 010642 262 KDFG----ILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GV-------------KPD---STIWRTLLGACRIHKHVTL 320 (505)
Q Consensus 262 ~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-------------~p~---~~~~~~ll~~~~~~g~~~~ 320 (505)
...+ .+++......|.-+|...+++++|..+++++ .. .|| ......++..+...|++.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 6422 1223444578889999999999999999988 11 122 2234445677889999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 321 GERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
|++.++++....|.|......+...+...|...+|++.++.....
T Consensus 435 Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 435 AQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999776554
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.77 E-value=1.3e-14 Score=153.12 Aligned_cols=343 Identities=9% Similarity=-0.018 Sum_probs=261.4
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCC--
Q 010642 15 FYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIP-- 92 (505)
Q Consensus 15 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-- 92 (505)
+..+++ ... -+.++.-..-.+......|+.++|++++....... +.+...+..+...+.+.|++++|..+|++..
T Consensus 2 ~~~~~~-~~~-~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~ 78 (765)
T PRK10049 2 LSWLRQ-ALK-SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL 78 (765)
T ss_pred chhhhh-hhc-cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555 222 23355555666777788999999999999987643 4566678999999999999999999999954
Q ss_pred -CCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHH
Q 010642 93 -QRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLC 171 (505)
Q Consensus 93 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~ 171 (505)
..+...+..++..+...|++++|+..+++... . .+.+.. +..+..++...|+.++|...++++.+.. |.+..++
T Consensus 79 ~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~--~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~ 153 (765)
T PRK10049 79 EPQNDDYQRGLILTLADAGQYDEALVKAKQLVS--G-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYP 153 (765)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--h-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 34677888999999999999999999999977 2 333455 8888888999999999999999999975 5567777
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC-------------------------------------------------CChhH-
Q 010642 172 NSLIAMYSKCGSLGMAFEVFKGMPE-------------------------------------------------KDVVS- 201 (505)
Q Consensus 172 ~~l~~~y~~~g~~~~A~~~~~~m~~-------------------------------------------------~~~~~- 201 (505)
..+..++.+.|..++|.+.++.... .++..
T Consensus 154 ~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~ 233 (765)
T PRK10049 154 TEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDAT 233 (765)
T ss_pred HHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence 7788888888887766666553322 01100
Q ss_pred --HH----HHHHHHHhCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcC--Ccch
Q 010642 202 --WS----AMISGLAMNGHGRDAIESFGAMQRAGVF-PDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILP--NIHH 272 (505)
Q Consensus 202 --~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~ 272 (505)
+. ..+.++...|++++|+..|+++.+.+.. |+.. ...+..++...|++++|..+|+++.......+ ....
T Consensus 234 ~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~ 312 (765)
T PRK10049 234 ADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEE 312 (765)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHH
Confidence 00 1123456778999999999999887532 4432 22256789999999999999999876311111 1234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHC-CCCC-------------C---HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 010642 273 YGCVVDLLGRAGLLDQAYQLITSM-GVKP-------------D---STIWRTLLGACRIHKHVTLGERVIEHLIELKAQE 335 (505)
Q Consensus 273 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-------------~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 335 (505)
...+..++.+.|++++|.++++++ ...| + ...+..+...+...|+.++|+..++++....|.+
T Consensus 313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n 392 (765)
T PRK10049 313 LADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN 392 (765)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 566677889999999999999988 3223 3 2244566778889999999999999999999999
Q ss_pred CchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 336 SGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 336 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
+..+..++..+...|++++|++.+++..+..
T Consensus 393 ~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 393 QGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999887754
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.72 E-value=1.5e-13 Score=142.55 Aligned_cols=358 Identities=11% Similarity=0.041 Sum_probs=261.4
Q ss_pred cccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCH
Q 010642 2 VRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKS 81 (505)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 81 (505)
+..+...|+.++|+..+++..... .........+...+...|+++.|.++++++++.. +.++.++..++..|...++.
T Consensus 75 l~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~ 152 (822)
T PRK14574 75 LQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRG 152 (822)
T ss_pred HHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCH
Confidence 345667899999999999998221 1122333333557788899999999999999887 44677888888999999999
Q ss_pred HHHHHHHhcCCCC--ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC-HHHHHHHHHHHHhccChHHHHHH---
Q 010642 82 FEACKLFDEIPQR--DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD-DVTCLLVLQACAHLGALEFGEKI--- 155 (505)
Q Consensus 82 ~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~i--- 155 (505)
++|++.++++... +...+-.++..+...++..+|++.++++.. ..|+ ...+..+..++.+.|-...|.++
T Consensus 153 ~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~----~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 153 GVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR----LAPTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred HHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 9999999999874 433443333344446666669999999977 3343 44444554454444433322222
Q ss_pred ---------------------------------------------HHHHHHc-C-CCCchhH-HH---HHHHHHHhcCCH
Q 010642 156 ---------------------------------------------HRYISEH-G-YGSKMNL-CN---SLIAMYSKCGSL 184 (505)
Q Consensus 156 ---------------------------------------------~~~~~~~-~-~~~~~~~-~~---~l~~~y~~~g~~ 184 (505)
++.+... + .|+.... .. -.+-++.+.|++
T Consensus 229 ~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~ 308 (822)
T PRK14574 229 NPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQT 308 (822)
T ss_pred CccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhH
Confidence 2222221 1 1222111 22 234467788999
Q ss_pred HHHHHHHhcCCCCC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhccCCHHHHHH
Q 010642 185 GMAFEVFKGMPEKD----VVSWSAMISGLAMNGHGRDAIESFGAMQRAG-----VFPDDQTFTGVLSACSHCGLVDEGMM 255 (505)
Q Consensus 185 ~~A~~~~~~m~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~t~~~ll~~~~~~g~~~~a~~ 255 (505)
.++++.|+.+..+. ..+-.+..++|...+++++|+.+|+++.... ..++......|..++...+++++|..
T Consensus 309 ~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~ 388 (822)
T PRK14574 309 ADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQ 388 (822)
T ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHH
Confidence 99999999998432 3355678899999999999999999997643 12233445788999999999999999
Q ss_pred HHHHHhhhcCC----------cCCc---chHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhH
Q 010642 256 FLDRMSKDFGI----------LPNI---HHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTL 320 (505)
Q Consensus 256 ~~~~~~~~~~~----------~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 320 (505)
+++.+.+.... .|+. ..+..++..+...|++.+|++.++++ ...| |...+..+...+...|++..
T Consensus 389 ~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~ 468 (822)
T PRK14574 389 FAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRK 468 (822)
T ss_pred HHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 99999873110 1222 12345677788999999999999999 4444 67788899999999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 321 GERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
|++.++.+....|.+..+...++..+...|+|.+|..+.+.+.+.
T Consensus 469 A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 469 AEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999877654
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.72 E-value=2e-13 Score=144.57 Aligned_cols=350 Identities=10% Similarity=0.026 Sum_probs=242.8
Q ss_pred ccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHc-cCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCH
Q 010642 3 RAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMK-FCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKS 81 (505)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 81 (505)
..|.+.|++++|+..+.++.+.++. +..-...+..++.. .++ +.+..++.. .+..+..++..+...|.+.|+.
T Consensus 190 rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~ 263 (987)
T PRK09782 190 QRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEK 263 (987)
T ss_pred HHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCH
Confidence 4577889999999999999988644 34446666667776 466 666666442 3346888999999999999999
Q ss_pred HHHHHHHhcCCC-----CChhHH---------------------------------------------------------
Q 010642 82 FEACKLFDEIPQ-----RDTVAW--------------------------------------------------------- 99 (505)
Q Consensus 82 ~~A~~~~~~~~~-----~~~~~~--------------------------------------------------------- 99 (505)
++|.+++++++. |...+|
T Consensus 264 ~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (987)
T PRK09782 264 ARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANE 343 (987)
T ss_pred HHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcch
Confidence 999999988751 000000
Q ss_pred ------------------------------------HHHHHHHHHCCChhHHHHHHHHchhccCCCCC------------
Q 010642 100 ------------------------------------NVLISCYIRNQRTRDALCLFDNLNREESGCKP------------ 131 (505)
Q Consensus 100 ------------------------------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p------------ 131 (505)
--+.-...+.|+.++|.++|+..........+
T Consensus 344 ~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 423 (987)
T PRK09782 344 MLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLL 423 (987)
T ss_pred HHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHH
Confidence 00001123455666666666655431000011
Q ss_pred ----------------------------------------------------CHHHHHHHHHHHHhccChHHHHHHHHHH
Q 010642 132 ----------------------------------------------------DDVTCLLVLQACAHLGALEFGEKIHRYI 159 (505)
Q Consensus 132 ----------------------------------------------------d~~t~~~ll~~~~~~~~~~~a~~i~~~~ 159 (505)
+...+..+..++.. ++.++|...+.+.
T Consensus 424 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~A 502 (987)
T PRK09782 424 ESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQA 502 (987)
T ss_pred HhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHH
Confidence 11222222222222 4445566655555
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HH
Q 010642 160 SEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE--KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDD-QT 236 (505)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t 236 (505)
.... |+......+..++...|++++|...|+++.. ++...+..+..++.+.|+.++|...|++..+.. |+. ..
T Consensus 503 l~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l 578 (987)
T PRK09782 503 EQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNAL 578 (987)
T ss_pred HHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHH
Confidence 5442 3433333445555678888888888886653 344556667778888899999999998888753 433 33
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHh
Q 010642 237 FTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRI 314 (505)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~ 314 (505)
+..+.......|++++|...+++..+ ..|+...+..+...+.+.|++++|...+++. ...|+ ...+..+..++..
T Consensus 579 ~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~ 655 (987)
T PRK09782 579 YWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD 655 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33344445566999999999999885 3567788889999999999999999999988 66665 5577777788999
Q ss_pred cCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 315 HKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 315 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
.|+.++|+..++++.+..|.++..+..+..+|...|++++|...+++..+..
T Consensus 656 ~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 656 SGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999987644
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.70 E-value=1.5e-13 Score=145.58 Aligned_cols=349 Identities=13% Similarity=0.057 Sum_probs=266.1
Q ss_pred cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHh-C-CCCChhHHHHHHHHHHhCCC---HH
Q 010642 8 SSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRD-G-YQLDSQLMTTLMDLYSTFEK---SF 82 (505)
Q Consensus 8 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~---~~ 82 (505)
.+...+|...+..|.+.. +-+......+--...+.|+.++|.++++..... + -..+....+-|+..|.+.+. ..
T Consensus 355 ~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 355 TRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred cCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 355666777777777652 114444444444556789999999999888652 1 12345566688888888866 33
Q ss_pred HHHHHHh-------------------------cCCC---C--ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC
Q 010642 83 EACKLFD-------------------------EIPQ---R--DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD 132 (505)
Q Consensus 83 ~A~~~~~-------------------------~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd 132 (505)
++..+-. .... + +...|..+..++.. +++.+|+..|.+... ..|+
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~----~~Pd 508 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ----RQPD 508 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH----hCCc
Confidence 3333311 1111 2 56778888888887 899999998888766 4477
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHH---HHHHH
Q 010642 133 DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSA---MISGL 209 (505)
Q Consensus 133 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~---li~~~ 209 (505)
......+..++...|++++|...++++... +|+...+..+..++.+.|+.++|...|++..+.++..++. +....
T Consensus 509 ~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l 586 (987)
T PRK09782 509 AWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQR 586 (987)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 655555556667899999999999997664 4555556778889999999999999999877544333333 33344
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHH
Q 010642 210 AMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQA 289 (505)
Q Consensus 210 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 289 (505)
...|++++|...|++..+ ..|+...+..+..++.+.|+.++|...+++.... .+.+...++.+...+...|++++|
T Consensus 587 ~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 587 YIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 456999999999999987 4567888999999999999999999999999863 333566788888899999999999
Q ss_pred HHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 010642 290 YQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGL 367 (505)
Q Consensus 290 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 367 (505)
.+.+++. ...| +...+..+..++...|++++|+..++++.+..|.+..+.........+..+++.|.+.+++--..+.
T Consensus 663 i~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 663 REMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 9999988 5556 4678899999999999999999999999999999988888899999999999999998887766554
Q ss_pred C
Q 010642 368 Q 368 (505)
Q Consensus 368 ~ 368 (505)
.
T Consensus 743 ~ 743 (987)
T PRK09782 743 D 743 (987)
T ss_pred c
Confidence 4
No 26
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=2.7e-15 Score=139.69 Aligned_cols=256 Identities=13% Similarity=0.096 Sum_probs=107.6
Q ss_pred HHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHH-HHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 010642 101 VLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCL-LVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYS 179 (505)
Q Consensus 101 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~-~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~ 179 (505)
.+...+.+.|++++|++++++... ...+|+...|- .+...+...++.+.|.+.++++.+.+ +.++..+..++.. .
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~--~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQ--KIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccc-ccccccccccccc-c
Confidence 345667778888888888855433 22244444443 34445566778888888888888765 3356667777777 6
Q ss_pred hcCCHHHHHHHHhcCC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010642 180 KCGSLGMAFEVFKGMP--EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAG-VFPDDQTFTGVLSACSHCGLVDEGMMF 256 (505)
Q Consensus 180 ~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~ 256 (505)
..+++++|.+++...- .++...+..++..+.+.++++++.+++++..... ..++...|..+...+.+.|+.++|...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888887663 3456677788888889999999999998877543 345666777788888899999999999
Q ss_pred HHHHhhhcCCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 010642 257 LDRMSKDFGILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM--GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKA 333 (505)
Q Consensus 257 ~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 333 (505)
+++..+. .| +....+.++..+...|+.+++.++++.. ....|...|..+..++...|+.++|...+++..+..|
T Consensus 169 ~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 169 YRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 9999863 34 4667888888899999999888877776 2234556788889999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 334 QESGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 334 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
.++.....+..++...|+.++|.+++.+..
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 999999999999999999999999887653
No 27
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=2e-12 Score=126.13 Aligned_cols=279 Identities=12% Similarity=-0.029 Sum_probs=212.6
Q ss_pred cCCcHHHHHHHHHHHHhCCCCChhHHHHH-HHHHHhCCCHHHHHHHHhcCCC--CChhHHH--HHHHHHHHCCChhHHHH
Q 010642 43 FCSLMGGLQIHARVLRDGYQLDSQLMTTL-MDLYSTFEKSFEACKLFDEIPQ--RDTVAWN--VLISCYIRNQRTRDALC 117 (505)
Q Consensus 43 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~--~~~~~~~--~li~~~~~~g~~~~A~~ 117 (505)
.|+++.|.+......+.. +++.++..+ .....+.|+.+.|...|.++.+ |+....- .....+...|++++|+.
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 589999987777654432 233444333 3334788999999999988865 3332222 33667888999999999
Q ss_pred HHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCch-------hHHHHHHHHHHhcCCHHHHHHH
Q 010642 118 LFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKM-------NLCNSLIAMYSKCGSLGMAFEV 190 (505)
Q Consensus 118 ~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~-------~~~~~l~~~y~~~g~~~~A~~~ 190 (505)
.++++.+ . -+-+...+..+...+.+.|+++++.+++..+.+.+..++. .+|..++....+..+.+...++
T Consensus 175 ~l~~~~~--~-~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 175 GVDKLLE--V-APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHh--c-CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999876 2 2335677788888999999999999999999987644322 2344555555666677888888
Q ss_pred HhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCc
Q 010642 191 FKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGIL 267 (505)
Q Consensus 191 ~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 267 (505)
++.+++ .++.....+..++...|+.++|.+++++..+. .||... .++.+....++.+++.+..+...+. .+
T Consensus 252 w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P 325 (398)
T PRK10747 252 WKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HG 325 (398)
T ss_pred HHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CC
Confidence 888763 47778889999999999999999999998873 445422 2344445669999999999999874 34
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 268 PNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 268 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
-|...+.++...+.+.+++++|.+.|+.. ...|+..++..+...+...|+.++|.+.+++...+-
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 45667889999999999999999999998 778999999999999999999999999999987653
No 28
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=7.7e-15 Score=136.64 Aligned_cols=253 Identities=17% Similarity=0.129 Sum_probs=75.2
Q ss_pred cchhcCCchHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHH
Q 010642 4 AYSMSSSPEEGFYLFEKMRQKRIPT-NPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSF 82 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 82 (505)
.+.+.|++++|+++++.......+| |..-|..+...+...++.+.|.+.++.++..+. .++..+..++.. ...++.+
T Consensus 17 ~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~~~ 94 (280)
T PF13429_consen 17 LLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGDPE 94 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccccc
Confidence 3455666666666665444332122 223333333344455666666666666665542 244455555555 4566666
Q ss_pred HHHHHHhcCCC--CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHH
Q 010642 83 EACKLFDEIPQ--RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYIS 160 (505)
Q Consensus 83 ~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 160 (505)
+|.+++...-+ ++...+..++..+.+.++++++..+++.+... ...+++...|..+...+.+.|+.++|...+++++
T Consensus 95 ~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 95 EALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEEL-PAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp -----------------------H-HHHTT-HHHHHHHHHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666554422 34455556666666666666666666665431 2234455555566666666666666666666666
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 010642 161 EHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTF 237 (505)
Q Consensus 161 ~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 237 (505)
+.. |.|..+.+.++..+...|+.+++.++++... ..|...|..+..+|...|++++|+..|++..... +.|..+.
T Consensus 174 ~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~ 251 (280)
T PF13429_consen 174 ELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWL 251 (280)
T ss_dssp HH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHH
T ss_pred HcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccccc
Confidence 653 4445566666666666666666555544332 3345556666666666666666666666655531 1244555
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHh
Q 010642 238 TGVLSACSHCGLVDEGMMFLDRMS 261 (505)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~ 261 (505)
..+..++...|+.++|.++..+..
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHT----------------
T ss_pred cccccccccccccccccccccccc
Confidence 556666666666666666655543
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.59 E-value=4.1e-12 Score=116.65 Aligned_cols=342 Identities=11% Similarity=0.133 Sum_probs=224.2
Q ss_pred cchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCC------------CChhHHHHH
Q 010642 4 AYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQ------------LDSQLMTTL 71 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~~l 71 (505)
.|.+.|++++|+..|+...+. .|+..+-..++-++...|+.+...+.|.+++..... |+....+.-
T Consensus 285 tfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 285 TFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred eEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence 366788888888888887775 466655444444555567888888888887754322 222222222
Q ss_pred HH-----HHHhCC--CHHHHH----HHHhcCCCCChhH---HH----------H--------HHHHHHHCCChhHHHHHH
Q 010642 72 MD-----LYSTFE--KSFEAC----KLFDEIPQRDTVA---WN----------V--------LISCYIRNQRTRDALCLF 119 (505)
Q Consensus 72 i~-----~~~~~g--~~~~A~----~~~~~~~~~~~~~---~~----------~--------li~~~~~~g~~~~A~~~~ 119 (505)
|. -.-+.+ +.++++ ++..-...||-.. |. . -...|.++|+++.|++++
T Consensus 363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 21 111111 112222 1222222222110 10 0 123478899999999998
Q ss_pred HHchhccCCCCCCHHHHHHHHH----------------------------------HHHhccChHHHHHHHHHHHHcCCC
Q 010642 120 DNLNREESGCKPDDVTCLLVLQ----------------------------------ACAHLGALEFGEKIHRYISEHGYG 165 (505)
Q Consensus 120 ~~m~~~~~~~~pd~~t~~~ll~----------------------------------~~~~~~~~~~a~~i~~~~~~~~~~ 165 (505)
.-..++......-..+-..++. .....|++++|.+.+.+++...-.
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 8776521111100000001111 111236777888888777765433
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010642 166 SKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLS 242 (505)
Q Consensus 166 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 242 (505)
.....|| +.-.+-+.|++++|+..|-++. ..++...-.+.+.|-...++.+|++++.+.... ++.|...+..|..
T Consensus 523 c~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~d 600 (840)
T KOG2003|consen 523 CTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLAD 600 (840)
T ss_pred HHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHH
Confidence 3333333 3445677888888888887653 456667777888888888899999988776653 4445677888888
Q ss_pred HHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHHHHHHHHHHH-HhcCchhH
Q 010642 243 ACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDSTIWRTLLGAC-RIHKHVTL 320 (505)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~-~~~g~~~~ 320 (505)
.|-+.|+-.+|++.+-.--+ -++.+..+...|..-|....-+++|..+|++. -++|+..-|..++..| ++.|+++.
T Consensus 601 lydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred Hhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHH
Confidence 99999999999887655443 34557888888888888999999999999998 6789999999988655 57899999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhCCC
Q 010642 321 GERVIEHLIELKAQESGDYVLLLNLYSSVGD 351 (505)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 351 (505)
|..+++......|.+......|++.+...|.
T Consensus 679 a~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 679 AFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999999999999999999999888874
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.59 E-value=1.1e-11 Score=123.11 Aligned_cols=319 Identities=13% Similarity=0.108 Sum_probs=246.5
Q ss_pred HHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhc---CCCCChhHHHHHHHHHHHCCChhHHH
Q 010642 40 CMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDE---IPQRDTVAWNVLISCYIRNQRTRDAL 116 (505)
Q Consensus 40 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~ 116 (505)
....|++++|..++.++++.. +.+...|..|...|-..|+.+++...+-. +...|..-|-.+.....+.|.+++|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 334499999999999999887 55778899999999999999998887643 34457788999999999999999999
Q ss_pred HHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHH----HHHHHHHHhcCCHHHHHHHHh
Q 010642 117 CLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLC----NSLIAMYSKCGSLGMAFEVFK 192 (505)
Q Consensus 117 ~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~----~~l~~~y~~~g~~~~A~~~~~ 192 (505)
-.|.+..+ --+++...+---...|-+.|+...|..-|.++.+...+.|..-+ ...+..|...++-+.|.+.++
T Consensus 228 ~cy~rAI~---~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 228 YCYSRAIQ---ANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHh---cCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999877 23445455555667788999999999999999887533332222 334666777888888888888
Q ss_pred cCCC--C---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH----------------------H----HHHH
Q 010642 193 GMPE--K---DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQT----------------------F----TGVL 241 (505)
Q Consensus 193 ~m~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----------------------~----~~ll 241 (505)
.... . +...++.++..|.+..+++.|......+......+|..- | ..+.
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 7653 2 445688889999999999999998888876222222111 1 1233
Q ss_pred HHHhccCCHHHHHHHHHHHhhhcCCcC--CcchHHHHHHHHHhcCChHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcC
Q 010642 242 SACSHCGLVDEGMMFLDRMSKDFGILP--NIHHYGCVVDLLGRAGLLDQAYQLITSM---GVKPDSTIWRTLLGACRIHK 316 (505)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g 316 (505)
-++.+....+....+....... ...| +...|.-+.++|.+.|++.+|+++|..+ ...-+...|..+..++...|
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 3445555555555555555553 4333 5678899999999999999999999999 22235779999999999999
Q ss_pred chhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 317 HVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
.+++|.+.++.++...|++..+-..|...|-+.|+.++|.++++.|.
T Consensus 464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999998876
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=1.7e-11 Score=113.24 Aligned_cols=384 Identities=13% Similarity=0.123 Sum_probs=283.7
Q ss_pred cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHH
Q 010642 8 SSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKL 87 (505)
Q Consensus 8 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 87 (505)
.++...|..+|++.+..... +...|..-+..=.+...+..|+.+++.++..-+..| ..|-..+.+=-..|++..|.++
T Consensus 86 q~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHHH
Confidence 45667888999998876532 555666666666778888999999998887643333 4556666666678999999999
Q ss_pred HhcCC--CCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHc-CC
Q 010642 88 FDEIP--QRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEH-GY 164 (505)
Q Consensus 88 ~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-~~ 164 (505)
|++-. +|+..+|++.|..-.+-...+.|..+|++..- +.|+..+|.--...=.+.|+...+.+++..+++. |-
T Consensus 164 ferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~----~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 164 FERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL----VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe----ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 98765 48999999999999999999999999998865 7789888888877777888888888888887764 21
Q ss_pred -CCchhHHHHHHHHHHhcCCHHHHHHHHhcC----CC----------------------------------------C--
Q 010642 165 -GSKMNLCNSLIAMYSKCGSLGMAFEVFKGM----PE----------------------------------------K-- 197 (505)
Q Consensus 165 -~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m----~~----------------------------------------~-- 197 (505)
..+...+.+....=.++..++.|.-+|+-. ++ .
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 112334555555555666677766666422 21 1
Q ss_pred -ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---hccCCHHHHHHHHHHHhhhcCC
Q 010642 198 -DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDD-------QTFTGVLSAC---SHCGLVDEGMMFLDRMSKDFGI 266 (505)
Q Consensus 198 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~ 266 (505)
|-.+|--.+..-...|+.+...++|++.... ++|-. ..|..+-.+| ....+++.+.++|+...+ -+
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lI 396 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LI 396 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hc
Confidence 3345666666667789999999999998875 55532 2233332232 347889999999999986 56
Q ss_pred cCCcchHHHHHHHHH----hcCChHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHH
Q 010642 267 LPNIHHYGCVVDLLG----RAGLLDQAYQLITSM-GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVL 341 (505)
Q Consensus 267 ~p~~~~~~~li~~~~----~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 341 (505)
+....|+.-+--+|+ ++.++..|.+++... |.-|-..++...|..-.+.++++....++++.++.+|.+-.+|..
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~k 476 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSK 476 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHH
Confidence 666777776655554 688999999999887 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHH
Q 010642 342 LLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINK 407 (505)
Q Consensus 342 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 407 (505)
....-...|+++.|..+|+-..++.....|..-| ++ ++.-....+..+.+-.+.+.+++
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellw---ka----YIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLW---KA----YIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH---HH----hhhhhhhcchHHHHHHHHHHHHH
Confidence 8888899999999999999988876544444333 22 12222344555666665555544
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=1.1e-11 Score=113.11 Aligned_cols=342 Identities=15% Similarity=0.126 Sum_probs=209.1
Q ss_pred hcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHH--HccCCcHHH-HHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Q 010642 7 MSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCC--MKFCSLMGG-LQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFE 83 (505)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 83 (505)
..|.+.++.-+|+.|.+.|+..+...--.+++.. -...++.-+ ++-|-.|.+.| .....+| +.|++.+
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~vAd 197 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAVAD 197 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccHHH
Confidence 3566667777777777776665555444444322 222222211 12222233222 1111222 2343333
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcC
Q 010642 84 ACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHG 163 (505)
Q Consensus 84 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~ 163 (505)
++-+...++..++.+||.+.++-...+.|.+++++-.. ...+.+..+|+.++.+-.- ...+++..+|....
T Consensus 198 ---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~--~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqk 268 (625)
T KOG4422|consen 198 ---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRA--AKGKVYREAFNGLIGASSY----SVGKKLVAEMISQK 268 (625)
T ss_pred ---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHH--hhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhh
Confidence 33333444667888888888888888888888888877 6777788888888776443 33377788888888
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHh----cCC----CCChhHHHHHHHHHHhCCChHH-HHHHHHHHHHC----CC
Q 010642 164 YGSKMNLCNSLIAMYSKCGSLGMAFEVFK----GMP----EKDVVSWSAMISGLAMNGHGRD-AIESFGAMQRA----GV 230 (505)
Q Consensus 164 ~~~~~~~~~~l~~~y~~~g~~~~A~~~~~----~m~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~----g~ 230 (505)
+.||..|+|+++...++.|+++.|.+.+- +|+ +|...+|..+|..+.+.++..+ |..++.++... .+
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 88888888888888888888776655443 343 5777888888888887777643 44455555432 22
Q ss_pred C---C-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhc---CCcCC---cchHHHHHHHHHhcCChHHHHHHHHHC---C
Q 010642 231 F---P-DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDF---GILPN---IHHYGCVVDLLGRAGLLDQAYQLITSM---G 297 (505)
Q Consensus 231 ~---p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~---~ 297 (505)
+ | |..-|...+..|.+..+.+-|.++..-+.... -+.|+ ..-|..+..+.+....++.-..+++.| -
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 2 2 23456677777878888888877766554321 12222 123556667777777777777777777 3
Q ss_pred CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc---------------------CCC---------------------
Q 010642 298 VKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELK---------------------AQE--------------------- 335 (505)
Q Consensus 298 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---------------------~~~--------------------- 335 (505)
.-|+..+...++++....+.++..-+++..++..+ |..
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~ 508 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAY 508 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666655555554444443332211 111
Q ss_pred -------------CchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 336 -------------SGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 336 -------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
+......+..+.+.|+.++|.+++..+.+.+
T Consensus 509 e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 509 ESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred HhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 1234556667889999999999999996554
No 33
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=7.3e-13 Score=127.49 Aligned_cols=280 Identities=10% Similarity=0.002 Sum_probs=214.8
Q ss_pred CcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC------CChhHHHHHHHHHHHCCChhHHHHH
Q 010642 45 SLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ------RDTVAWNVLISCYIRNQRTRDALCL 118 (505)
Q Consensus 45 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~ 118 (505)
+..+|...|+.+... ......+...+..+|...+++++|+++|+.+.. .+...|.+.+--+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 456788888885443 334457778888899999999999999988764 367788877754433 222333
Q ss_pred HHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 010642 119 FDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKD 198 (505)
Q Consensus 119 ~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 198 (505)
+.+-.- .--+-.+.||..+.+.|.-+++.+.|.+.|+++++.+ +....+|+.+..-+.....+|.|...|+.....|
T Consensus 409 Laq~Li--~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLI--DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHH--hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 322221 1233456899999999999999999999999998875 4478899999999999999999999999888777
Q ss_pred hhHHHH---HHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHH
Q 010642 199 VVSWSA---MISGLAMNGHGRDAIESFGAMQRAGVFP-DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYG 274 (505)
Q Consensus 199 ~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 274 (505)
+..||+ +...|.+.++++.|.-.|++..+ +.| +.+....+...+.+.|+.|+|++++++...- .+.|+-.--
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~ 561 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKY 561 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHH
Confidence 765555 56789999999999999999987 444 4466667777888999999999999999752 223444444
Q ss_pred HHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCC
Q 010642 275 CVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQES 336 (505)
Q Consensus 275 ~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 336 (505)
-.+..+...+++++|+..++++ .+.|+ ..++..+...|.+.|+.+.|..-|..+..++|...
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 5566788899999999999999 66676 45677777999999999999999999999998754
No 34
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.55 E-value=5.4e-12 Score=126.21 Aligned_cols=359 Identities=13% Similarity=0.081 Sum_probs=229.7
Q ss_pred ccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC---
Q 010642 3 RAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFE--- 79 (505)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--- 79 (505)
++|-..|++++|...|.+..+....-....+..+...+...|+++.+...|+.+.+.. +.+..+.-.|...|+..+
T Consensus 315 Rs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~ 393 (1018)
T KOG2002|consen 315 RSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQ 393 (1018)
T ss_pred HHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhh
Confidence 3566788888888888777765322223345566778888888888888888888764 556667777777777664
Q ss_pred -CHHHHHHHHhcCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHchhc--cCCCCCCHHHHHHHHHHHHhccChHHHH
Q 010642 80 -KSFEACKLFDEIPQR---DTVAWNVLISCYIRNQRTRDALCLFDNLNRE--ESGCKPDDVTCLLVLQACAHLGALEFGE 153 (505)
Q Consensus 80 -~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~pd~~t~~~ll~~~~~~~~~~~a~ 153 (505)
..+.|..++....++ |..+|-.+...|-...-+.. +.+|...... ..+-++.+...+.+.......|+++.|.
T Consensus 394 ~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~ 472 (1018)
T KOG2002|consen 394 EKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKAL 472 (1018)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHH
Confidence 345555555544432 34444444444333322222 3333222100 0122233444455554455555555555
Q ss_pred HHHHH--------------------------------------------HHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 010642 154 KIHRY--------------------------------------------ISEHGYGSKMNLCNSLIAMYSKCGSLGMAFE 189 (505)
Q Consensus 154 ~i~~~--------------------------------------------~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~ 189 (505)
..|.. +.+.- |.-+..|--|+.+....+...+|..
T Consensus 473 ~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~ 551 (1018)
T KOG2002|consen 473 EHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASL 551 (1018)
T ss_pred HHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHH
Confidence 54444 44431 1112222222222222345556666
Q ss_pred HHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc------------cCCHHHH
Q 010642 190 VFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRA-GVFPDDQTFTGVLSACSH------------CGLVDEG 253 (505)
Q Consensus 190 ~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~------------~g~~~~a 253 (505)
.++... +.|+..|+.+...|.....+..|.+-|...... ...+|..+..+|...|.+ .+..++|
T Consensus 552 ~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KA 631 (1018)
T KOG2002|consen 552 LLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKA 631 (1018)
T ss_pred HHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHH
Confidence 665543 346677777777788777777777766666543 233677777677665532 3456788
Q ss_pred HHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHh
Q 010642 254 MMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM--GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIEL 331 (505)
Q Consensus 254 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 331 (505)
+++|.++.+ ..+.|...-|.+.-.++..|++.+|..+|.+. ...-...+|-.+.+.|...|++..|++.|+...+.
T Consensus 632 lq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 632 LQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988886 44567788888999999999999999999988 22234568889999999999999999999997765
Q ss_pred c--CCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 332 K--AQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 332 ~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
. .+++.....|..++.+.|++.+|.+.........
T Consensus 710 f~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 710 FYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred hcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 4 4556788899999999999999999887766543
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=3.2e-11 Score=118.24 Aligned_cols=276 Identities=11% Similarity=0.017 Sum_probs=126.0
Q ss_pred CCCHHHHHHHHhcCCC--CC-hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHH--HHHHHHHHHHhccChHHH
Q 010642 78 FEKSFEACKLFDEIPQ--RD-TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDV--TCLLVLQACAHLGALEFG 152 (505)
Q Consensus 78 ~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~--t~~~ll~~~~~~~~~~~a 152 (505)
.|+++.|.+.+.+..+ |+ ...+-....++.+.|+++.|.+.+.+..+ ..|+.. ........+...|+++.|
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~----~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAE----LAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4555555555554433 11 22223333445555555555555555533 223321 222234444555555555
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHH----HHHHHHHhCCChHHHHHHHHHH
Q 010642 153 EKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEK---DVVSWS----AMISGLAMNGHGRDAIESFGAM 225 (505)
Q Consensus 153 ~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~---~~~~~~----~li~~~~~~g~~~~A~~~~~~m 225 (505)
...++.+.+.. |.++.+...+..+|.+.|++++|.+.+....+. +...+. ....++...+..+++.+.+..+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 55555555553 444455555555555555655555555554422 111111 0111112222222223333333
Q ss_pred HHCCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcch-HHHHHHHH--HhcCChHHHHHHHHHC-CC
Q 010642 226 QRAGV---FPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHH-YGCVVDLL--GRAGLLDQAYQLITSM-GV 298 (505)
Q Consensus 226 ~~~g~---~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~~~--~~~g~~~~A~~~~~~~-~~ 298 (505)
..... +.+...+..+...+...|+.++|.+++++..+. .|+... ...++..+ ...++.+.+.+.+++. ..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 32211 114445555555556666666666666655542 122211 00011211 2234555555555544 22
Q ss_pred CCC-H--HHHHHHHHHHHhcCchhHHHHHHHH--HHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHH
Q 010642 299 KPD-S--TIWRTLLGACRIHKHVTLGERVIEH--LIELKAQESGDYVLLLNLYSSVGDWEKVKELREFM 362 (505)
Q Consensus 299 ~p~-~--~~~~~ll~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 362 (505)
.|+ . ....++...+.+.|++++|.+.|+. ..+..|+ +..+..+...+.+.|+.++|.+++++-
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~-~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD-ANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 332 2 3344555556666666666666663 3333333 234556666666666666666666553
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.54 E-value=4.4e-11 Score=116.70 Aligned_cols=275 Identities=9% Similarity=0.032 Sum_probs=212.6
Q ss_pred CCCHHHHHHHHhcCCCC--C-hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHH--HHHHHHHhccChHHH
Q 010642 78 FEKSFEACKLFDEIPQR--D-TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCL--LVLQACAHLGALEFG 152 (505)
Q Consensus 78 ~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~--~ll~~~~~~~~~~~a 152 (505)
.|+++.|++.+...++. + ...|-.......+.|+++.|.+.|.++.+ ..|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~----~~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAE----LADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHHHCCCHHHH
Confidence 79999999999887653 2 33343334555899999999999999965 566764433 335678899999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh---h--------HHHHHHHHHHhCCChHHHHHH
Q 010642 153 EKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDV---V--------SWSAMISGLAMNGHGRDAIES 221 (505)
Q Consensus 153 ~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~---~--------~~~~li~~~~~~g~~~~A~~~ 221 (505)
.+.++.+.+.. |.++.+...+...|.+.|++++|.+++..+.+... . +|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999986 67889999999999999999999999998874321 1 333444444445556666667
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC
Q 010642 222 FGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP 300 (505)
Q Consensus 222 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 300 (505)
++..... .+.+......+..++...|+.++|..++++..+. +|+... .++.+....++.+++.+.+++. ...|
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCC
Confidence 7766432 3446778888999999999999999999998763 344422 2233344569999999999888 5556
Q ss_pred C-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 301 D-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 301 ~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
+ ...+..+...|...+++++|...|+.+.+..|++ ..+..|..++.+.|+.++|.+++++-..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5 5567788899999999999999999999998775 6788999999999999999999987644
No 37
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.53 E-value=1.6e-10 Score=111.03 Aligned_cols=361 Identities=9% Similarity=0.010 Sum_probs=279.0
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHH
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEA 84 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 84 (505)
|.+.+.++-|..+|...++.- +-+...|..+...--.-|..+.-..++++++..- +.....|-....-+-..|++..|
T Consensus 526 ~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~a 603 (913)
T KOG0495|consen 526 CEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAA 603 (913)
T ss_pred HHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHH
Confidence 445566666777777766642 2244556655555555577777777777777653 34555666666667777888888
Q ss_pred HHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHH
Q 010642 85 CKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISE 161 (505)
Q Consensus 85 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 161 (505)
+.++...-+ .+...|-+-+.....+.+++.|..+|.+... ..|+...|.--+..---+++.++|.+++++.++
T Consensus 604 r~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~----~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk 679 (913)
T KOG0495|consen 604 RVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS----ISGTERVWMKSANLERYLDNVEEALRLLEEALK 679 (913)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc----cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH
Confidence 888776643 3667888888888889999999999988854 667777777666666667888999999988888
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 010642 162 HGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE--K-DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFT 238 (505)
Q Consensus 162 ~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 238 (505)
. ++.-...|-.+...+-+.++++.|...|..-.+ | .+..|-.+...=-+.|+.-.|..+++..+..+.+ +...|.
T Consensus 680 ~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwl 757 (913)
T KOG0495|consen 680 S-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWL 757 (913)
T ss_pred h-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHH
Confidence 6 466677888888899999999999998887653 3 4456887777777888999999999998876544 667888
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch
Q 010642 239 GVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHV 318 (505)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 318 (505)
..|..-.+.|+.+.|..+..+..+ ..+.+...|..-|-+..+.++-....+.+++-. -|+.+.-++...+-...++
T Consensus 758 e~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~ 833 (913)
T KOG0495|consen 758 ESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKI 833 (913)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHH
Confidence 889999999999999999988887 556677788888888888888888888887763 3556666677788888999
Q ss_pred hHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCceeEEEEC
Q 010642 319 TLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLK 379 (505)
Q Consensus 319 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 379 (505)
+.|...|.+..+.+|++..+|..+...+.+.|.-++-.+++.+.... .|..|..|.-+.
T Consensus 834 ~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 834 EKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 99999999999999999999999999999999999999999888764 355566665443
No 38
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=3e-11 Score=110.33 Aligned_cols=224 Identities=13% Similarity=0.165 Sum_probs=102.7
Q ss_pred cccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCH
Q 010642 2 VRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKS 81 (505)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 81 (505)
|.|.++-...+.|.+++++......+.+..+||.++.+-.-. .+..++.+|+.....||..++|+++...++.|++
T Consensus 214 I~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F 289 (625)
T KOG4422|consen 214 IAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKF 289 (625)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcch
Confidence 445555555555555555555554455555555555443322 1244555555555555555555555555555555
Q ss_pred HHHHHHH----hcCC----CCChhHHHHHHHHHHHCCChhH-HHHHHHHchhcc--CCCC----CCHHHHHHHHHHHHhc
Q 010642 82 FEACKLF----DEIP----QRDTVAWNVLISCYIRNQRTRD-ALCLFDNLNREE--SGCK----PDDVTCLLVLQACAHL 146 (505)
Q Consensus 82 ~~A~~~~----~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~~~----pd~~t~~~ll~~~~~~ 146 (505)
+.|.+.+ .+|. +|...+|..+|..+.+.++..+ |.....++...- ..++ -|..-|.+.+..|.+.
T Consensus 290 ~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l 369 (625)
T KOG4422|consen 290 EDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSL 369 (625)
T ss_pred HHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHh
Confidence 4443332 2222 2455555555555555555433 222222222110 1111 1233444555555555
Q ss_pred cChHHHHHHHHHHHHcC----CCCc---hhHHHHHHHHHHhcCCHHHHHHHHhcCCC----CChhHHHHHHHHHHhCCCh
Q 010642 147 GALEFGEKIHRYISEHG----YGSK---MNLCNSLIAMYSKCGSLGMAFEVFKGMPE----KDVVSWSAMISGLAMNGHG 215 (505)
Q Consensus 147 ~~~~~a~~i~~~~~~~~----~~~~---~~~~~~l~~~y~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~ 215 (505)
.+.+.|.+++....... ++|+ ...|..+..+.++....+.-...|+.|.. |+..+...++.+....|++
T Consensus 370 ~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~ 449 (625)
T KOG4422|consen 370 RDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRL 449 (625)
T ss_pred hhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcc
Confidence 55555555554433210 1121 12234444445555555555555555442 3334444444444455555
Q ss_pred HHHHHHHHHHHHCC
Q 010642 216 RDAIESFGAMQRAG 229 (505)
Q Consensus 216 ~~A~~~~~~m~~~g 229 (505)
+-.-+++.+++..|
T Consensus 450 e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 450 EVIPRIWKDSKEYG 463 (625)
T ss_pred hhHHHHHHHHHHhh
Confidence 55555555544443
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=2.4e-12 Score=123.97 Aligned_cols=277 Identities=16% Similarity=0.082 Sum_probs=216.5
Q ss_pred CHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHH
Q 010642 80 KSFEACKLFDEIPQ--R-DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIH 156 (505)
Q Consensus 80 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~ 156 (505)
+..+|...|..+++ + .......+..+|...+++++|.++|+.+++.+.-..-+...|++.+--+-+. .+..++
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 46789999998765 2 3345567889999999999999999999773222223567888887665432 222222
Q ss_pred H-HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 010642 157 R-YISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKD---VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP 232 (505)
Q Consensus 157 ~-~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 232 (505)
. .+.+. -+..+.+|-++.+.|.-.++.+.|++.|++..+-| ..+|+.+..-+.....+|.|...|+.... +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 2 23333 26678999999999999999999999999987644 46788888888899999999999998875 333
Q ss_pred CH-HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHH
Q 010642 233 DD-QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTL 308 (505)
Q Consensus 233 ~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 308 (505)
.. ..|-.+...|.+.++++.|+-.|+... .+.| +......+...+-+.|+.++|+++++++ -+.| |+..--.-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 32 456677888999999999999999997 4556 4556667778899999999999999998 3333 34443344
Q ss_pred HHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 309 LGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 309 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
...+...+++++|.+.++++++.-|++...|..+...|-+.|+.+.|..-|.-+.+..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 5566778999999999999999999999999999999999999999998887766543
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.51 E-value=1.9e-11 Score=119.86 Aligned_cols=284 Identities=11% Similarity=0.025 Sum_probs=207.8
Q ss_pred HccCCcHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHhCCCHHHHHHHHhcCCC--CC--hhHHHHHHHHHHHCCChhHH
Q 010642 41 MKFCSLMGGLQIHARVLRDGYQLDSQ-LMTTLMDLYSTFEKSFEACKLFDEIPQ--RD--TVAWNVLISCYIRNQRTRDA 115 (505)
Q Consensus 41 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~A 115 (505)
...|+++.|.+.+....+.. |+.. .+-.....+...|+.+.|.+.|.+..+ |+ ....-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 35689999999998877654 4433 334445667788999999999988643 33 23444457788889999999
Q ss_pred HHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHH-------HHHHHHHhcCCHHHHH
Q 010642 116 LCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCN-------SLIAMYSKCGSLGMAF 188 (505)
Q Consensus 116 ~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~-------~l~~~y~~~g~~~~A~ 188 (505)
+..++.+.+ . -|-+...+..+...+...|+++.+.+.+..+.+.+..+...... .++..-......+...
T Consensus 173 l~~l~~l~~--~-~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 173 RHGVDKLLE--M-APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHH--h-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999977 2 23356678888899999999999999999999987544332211 1121112233345555
Q ss_pred HHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH--H-HHHHHHHhccCCHHHHHHHHHHHhh
Q 010642 189 EVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQT--F-TGVLSACSHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 189 ~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~-~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (505)
+.++..++ .++..+..+...+...|+.++|.+++++..+. .||... + ..........++.+.+.+.++...+
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 66666653 48888999999999999999999999999885 344432 1 1122233445788899999988887
Q ss_pred hcCCcCCcchHHHHHHHHHhcCChHHHHHHHHH--C-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHh
Q 010642 263 DFGILPNIHHYGCVVDLLGRAGLLDQAYQLITS--M-GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIEL 331 (505)
Q Consensus 263 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 331 (505)
.....|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++....
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 533333325667889999999999999999994 3 67899998999999999999999999999997654
No 41
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=2.8e-11 Score=112.41 Aligned_cols=348 Identities=13% Similarity=0.071 Sum_probs=239.3
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhCCCHH
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTN-PFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLD-SQLMTTLMDLYSTFEKSF 82 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~ 82 (505)
|.++|.+++|+..|.+.+.. .|| +.-|.....+|...|+|+...+--...++.+ |+ +..+..-..++-..|+++
T Consensus 125 ~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 125 FFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhhccHH
Confidence 67899999999999999985 577 6678888888889999998888777766553 33 334444455566666666
Q ss_pred HHHH------HHhcC-------------------------CC--CChhHHHHHHHHHHH---------------------
Q 010642 83 EACK------LFDEI-------------------------PQ--RDTVAWNVLISCYIR--------------------- 108 (505)
Q Consensus 83 ~A~~------~~~~~-------------------------~~--~~~~~~~~li~~~~~--------------------- 108 (505)
+|+. +++.. .+ +.+..-.+.|..|..
T Consensus 201 eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l 280 (606)
T KOG0547|consen 201 EALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAAL 280 (606)
T ss_pred HHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhH
Confidence 5542 11111 10 111111112222211
Q ss_pred --------CC---ChhHHHHHHHHchhccCCCCC-----CH------HHHHHHHHHHHhccChHHHHHHHHHHHHcCCCC
Q 010642 109 --------NQ---RTRDALCLFDNLNREESGCKP-----DD------VTCLLVLQACAHLGALEFGEKIHRYISEHGYGS 166 (505)
Q Consensus 109 --------~g---~~~~A~~~~~~m~~~~~~~~p-----d~------~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~ 166 (505)
.+ .+.+|.+.+.+-... ....+ |. .+.......+.-.|+.-.+.+-++..++.. +.
T Consensus 281 ~~~l~~l~~~~~e~Y~~a~~~~te~~~~-~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~-~~ 358 (606)
T KOG0547|consen 281 AEALEALEKGLEEGYLKAYDKATEECLG-SESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD-PA 358 (606)
T ss_pred HHHHHHHHhhCchhHHHHHHHHHHHhhh-hhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC-cc
Confidence 01 122222222221110 00111 11 111111122234577888888888888875 33
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 010642 167 KMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP-DDQTFTGVLS 242 (505)
Q Consensus 167 ~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 242 (505)
++..|--+..+|....+.++-...|+... ..|+.+|..-...+.-.+++++|..=|++.+.. .| +...|..+-.
T Consensus 359 ~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~ 436 (606)
T KOG0547|consen 359 FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCC 436 (606)
T ss_pred cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHH
Confidence 34447778888999999999999998775 346677887788888888999999999999874 44 3466777777
Q ss_pred HHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC---------HHHHHHHHHHH
Q 010642 243 ACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD---------STIWRTLLGAC 312 (505)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---------~~~~~~ll~~~ 312 (505)
+..+.+.+++++..|++..+ .++.-+..|+-....+...+++++|.+.|+.. .+.|+ +.+-.+++..-
T Consensus 437 a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q 514 (606)
T KOG0547|consen 437 ALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ 514 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc
Confidence 77789999999999999998 55666789999999999999999999999987 44443 22222233222
Q ss_pred HhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 313 RIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
=.+++..|..+++++.+.+|.....|..|...-...|+.++|+++|++-.
T Consensus 515 -wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 515 -WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred -hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 23899999999999999999999999999999999999999999998754
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=4.3e-11 Score=105.63 Aligned_cols=222 Identities=14% Similarity=0.095 Sum_probs=104.6
Q ss_pred HHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCc----hhHHHHHHHHH
Q 010642 103 ISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSK----MNLCNSLIAMY 178 (505)
Q Consensus 103 i~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~----~~~~~~l~~~y 178 (505)
..-|...|-++.|..+|..+.. .+ ..-......++..|....+|++|..+-.++.+.+-.+. ...|.-|...+
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~d--e~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVD--EG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhc--ch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 3334444444444444444433 11 11122333444444444444444444444444332221 12334444444
Q ss_pred HhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010642 179 SKCGSLGMAFEVFKGMPEKD---VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMM 255 (505)
Q Consensus 179 ~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 255 (505)
....+++.|..++.+..+-| +..--.+...+...|++++|.+.++...+.+..--..+...|..+|.+.|+.+++..
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 191 LASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 44555555555555443222 222223334555566666666666666554333233445556666666666666666
Q ss_pred HHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHH-CCCCCCHHHHHHHHHHHHhc---CchhHHHHHHHHHHH
Q 010642 256 FLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITS-MGVKPDSTIWRTLLGACRIH---KHVTLGERVIEHLIE 330 (505)
Q Consensus 256 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~ 330 (505)
.+.++.+. .++...-..+.+......-.+.|...+.+ +..+|+...+..|+..-... |...+....++.|..
T Consensus 271 fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 271 FLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 66666543 23444444444444444444555444433 35567777777777654332 223333444444443
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=1.5e-10 Score=106.59 Aligned_cols=354 Identities=11% Similarity=0.070 Sum_probs=235.3
Q ss_pred cchhcCCchHHHHHHHHHHhCCCCCChh----hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC
Q 010642 4 AYSMSSSPEEGFYLFEKMRQKRIPTNPF----ACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFE 79 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 79 (505)
.|.+..++.+|+.+|+-.+..-+..+.. .++.+.-.+.+.|.++.|...|+...+. .|+..+--.|+-.+..-|
T Consensus 246 i~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~ 323 (840)
T KOG2003|consen 246 IHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIG 323 (840)
T ss_pred eeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecC
Confidence 3566778889999888777653222222 3444444567889999999999998876 477776666666677789
Q ss_pred CHHHHHHHHhcCCC----------------CChhHHHH-----HHHHHHHC--CChhHHHHHHHHchhccCCCCCCHHH-
Q 010642 80 KSFEACKLFDEIPQ----------------RDTVAWNV-----LISCYIRN--QRTRDALCLFDNLNREESGCKPDDVT- 135 (505)
Q Consensus 80 ~~~~A~~~~~~~~~----------------~~~~~~~~-----li~~~~~~--g~~~~A~~~~~~m~~~~~~~~pd~~t- 135 (505)
+-++..+.|..|.. |+....|. .+.-.-+. .+-++++-.--++.. .-+.||-..
T Consensus 324 d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiia--pvi~~~fa~g 401 (840)
T KOG2003|consen 324 DAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIA--PVIAPDFAAG 401 (840)
T ss_pred cHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhc--cccccchhcc
Confidence 99999999988752 22222222 22222222 122333333334433 334444211
Q ss_pred ------------HH--------HHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHH-----------------
Q 010642 136 ------------CL--------LVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMY----------------- 178 (505)
Q Consensus 136 ------------~~--------~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y----------------- 178 (505)
+. .-...+.+.|+++.|.+++....+..-......-+.|--.+
T Consensus 402 ~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~ 481 (840)
T KOG2003|consen 402 CDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADI 481 (840)
T ss_pred cHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHH
Confidence 00 01234678999999999988776653222222222211111
Q ss_pred -------------------HhcCCHHHHHHHHhcCCCCChhHHHHHH---HHHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 010642 179 -------------------SKCGSLGMAFEVFKGMPEKDVVSWSAMI---SGLAMNGHGRDAIESFGAMQRAGVFPDDQT 236 (505)
Q Consensus 179 -------------------~~~g~~~~A~~~~~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 236 (505)
...|++++|.+.|++....|...-.+|. ..+-..|+.++|++.|-++..- +.-+...
T Consensus 482 aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~ev 560 (840)
T KOG2003|consen 482 ALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEV 560 (840)
T ss_pred HhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHH
Confidence 2467788888888877766665444333 3466788999999998876542 2235566
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHh
Q 010642 237 FTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRI 314 (505)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 314 (505)
+..+...|....+..+|++++.+... -++.|+...+-|.+.|-+.|+-..|.+..-.- ..-| +..+..-|..-|..
T Consensus 561 l~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid 638 (840)
T KOG2003|consen 561 LVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID 638 (840)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh
Confidence 77778888889999999999988875 56678889999999999999999998876554 3333 56666667777778
Q ss_pred cCchhHHHHHHHHHHHhcCCCCchHHHHH-HHHHhCCCHHHHHHHHHHHHhC
Q 010642 315 HKHVTLGERVIEHLIELKAQESGDYVLLL-NLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 315 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
..-++.++..|++..-+.|.. .-|..++ ..+.+.|++..|..+++...++
T Consensus 639 tqf~ekai~y~ekaaliqp~~-~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 639 TQFSEKAINYFEKAALIQPNQ-SKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred hHHHHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 888899999999987777654 5566554 5557899999999999988654
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=6.3e-10 Score=102.94 Aligned_cols=253 Identities=14% Similarity=0.104 Sum_probs=178.0
Q ss_pred HHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcC
Q 010642 105 CYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGY--GSKMNLCNSLIAMYSKCG 182 (505)
Q Consensus 105 ~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~--~~~~~~~~~l~~~y~~~g 182 (505)
++....+.+++++-...... .|++.+...-+....+.-...++++|+.+|+.+.+... -.|..+|+.++-+--.+.
T Consensus 236 a~~el~q~~e~~~k~e~l~~--~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSS--VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHh--ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 34444455555555555544 44444443333333444455566666666666665521 013344444432222211
Q ss_pred CHHH-HHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010642 183 SLGM-AFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPD-DQTFTGVLSACSHCGLVDEGMMFLDRM 260 (505)
Q Consensus 183 ~~~~-A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~ 260 (505)
++.- |..++ .+.+--+.|.-.+.+-|+-.++.++|...|+...+. .|. ...|+.+..-|....+...|++-++..
T Consensus 314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 1111 22222 111222334444556677788999999999999885 444 456777888899999999999999999
Q ss_pred hhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCch
Q 010642 261 SKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGD 338 (505)
Q Consensus 261 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 338 (505)
.+ -.+.|-..|-.|.++|.-.+...-|+-+|++. ..+| |...|.+|..+|.+.++.++|++.+.+....+..+...
T Consensus 391 vd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 391 VD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred Hh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 86 33457889999999999999999999999998 6777 67899999999999999999999999999999888899
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 339 YVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 339 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
|..|...|-+.++.++|.+.|++-.+
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999988765
No 45
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.46 E-value=4.9e-10 Score=111.73 Aligned_cols=355 Identities=14% Similarity=0.061 Sum_probs=260.2
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHH
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEA 84 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 84 (505)
|++ |+.++|..++.+.++..+. +...|.+|...|-..|+.+.+...+-.+-... +.|...|-.+.+...+.|+++.|
T Consensus 150 far-g~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 150 FAR-GDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHh-CCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 344 9999999999999987544 66789999999999999999998876665554 56789999999999999999999
Q ss_pred HHHHhcCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCH-HH----HHHHHHHHHhccChHHHHHHH
Q 010642 85 CKLFDEIPQR---DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDD-VT----CLLVLQACAHLGALEFGEKIH 156 (505)
Q Consensus 85 ~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~-~t----~~~ll~~~~~~~~~~~a~~i~ 156 (505)
.-.|.+..+. +....-.-+..|-+.|+...|+..|.++.. . .+|.. .- --.++..+...++-+.|.+++
T Consensus 227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~--~-~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQ--L-DPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHh--h-CCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999988763 444444556789999999999999999977 2 22322 22 223455666677778888888
Q ss_pred HHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC----CCh----------------------hHHH----HH
Q 010642 157 RYISEH-GYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE----KDV----------------------VSWS----AM 205 (505)
Q Consensus 157 ~~~~~~-~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~----~~~----------------------~~~~----~l 205 (505)
...... +-..+...++.++..|.+...++.|......+.. +|. .+|+ .+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 877762 2244566788999999999999998887755432 111 1111 22
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhc
Q 010642 206 ISGLAMNGHGRDAIESFGAMQRAGVFP--DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRA 283 (505)
Q Consensus 206 i~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 283 (505)
.-++......+....+........+.| +...|.-+..++.+.|.+.+|..+|..+... ...-+...|-.+..+|...
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccccchhhhHHHHHHHHHH
Confidence 334444444444444444455554444 4467888999999999999999999999875 3333467899999999999
Q ss_pred CChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhc---------CCCCchHHHHHHHHHhCCCH
Q 010642 284 GLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELK---------AQESGDYVLLLNLYSSVGDW 352 (505)
Q Consensus 284 g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~ 352 (505)
|.+++|.+.++.. ...|+ ...--+|-..+.+.|+.++|.+.++.+..-+ ++...........|...|+.
T Consensus 463 ~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 9999999999988 55564 3344556677889999999999998865222 22233455678889999999
Q ss_pred HHHHHHHHHHHhCC
Q 010642 353 EKVKELREFMNEKG 366 (505)
Q Consensus 353 ~~a~~~~~~m~~~~ 366 (505)
++-..+-..|....
T Consensus 543 E~fi~t~~~Lv~~~ 556 (895)
T KOG2076|consen 543 EEFINTASTLVDDF 556 (895)
T ss_pred HHHHHHHHHHHHHH
Confidence 88777777766543
No 46
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.42 E-value=3.8e-09 Score=101.80 Aligned_cols=260 Identities=10% Similarity=0.014 Sum_probs=205.6
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 010642 97 VAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIA 176 (505)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~ 176 (505)
.+|+.-...|.+.+.++-|..+|....+ -.+-+...|......--..|..+....++++++..- |.....|-....
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alq---vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ak 592 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQ---VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAK 592 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHh---hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHH
Confidence 4566666777778888888888888766 233344555555555556678888888888888873 455666777778
Q ss_pred HHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010642 177 MYSKCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEG 253 (505)
Q Consensus 177 ~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 253 (505)
-+-..|++..|..++...-+ .+...|-+-+..-..+.+++.|..+|.+... ..|+...|.--+..---.++.++|
T Consensus 593 e~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHH
Confidence 88889999999999887653 3556788888889999999999999999887 456666666655556667899999
Q ss_pred HHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHh
Q 010642 254 MMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIEL 331 (505)
Q Consensus 254 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 331 (505)
.+++++..+. ++.-...|..+.+.+-+.++++.|.+.|..- ..-|+ ...|-.|...--+.|+.-.|..++++..-.
T Consensus 671 ~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 671 LRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 9999999874 3333567888889999999999999988876 44454 557888888888889999999999999999
Q ss_pred cCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 332 KAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 332 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
+|.+...|...+.+-.+.|+.+.|..+..+..+
T Consensus 749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 749 NPKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999888776654
No 47
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.41 E-value=1.2e-09 Score=109.86 Aligned_cols=134 Identities=13% Similarity=0.110 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcC--CcCCc------chHHHHHHHHHhcCChHHHHHHHHHC-CCCCCH
Q 010642 232 PDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFG--ILPNI------HHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDS 302 (505)
Q Consensus 232 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~ 302 (505)
+.....|.+.......|+++.|...|........ ..++. .+--.+...+-..++++.|.+.+..+ ...|.-
T Consensus 450 ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~Y 529 (1018)
T KOG2002|consen 450 IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGY 529 (1018)
T ss_pred CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchh
Confidence 3444445555555555555555555555443200 11111 01112233333444555555555554 223332
Q ss_pred -HHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 303 -TIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 303 -~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
..|--++......++..+|...++.+...+..++..+..+.+.|.+...|.-|.+-|+...++
T Consensus 530 Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~ 593 (1018)
T KOG2002|consen 530 IDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKK 593 (1018)
T ss_pred HHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhh
Confidence 223333322333345555555555555555555555555555555555565555555555443
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.40 E-value=1.1e-09 Score=99.91 Aligned_cols=280 Identities=14% Similarity=0.019 Sum_probs=189.4
Q ss_pred cCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCC----ChhHHHHHHHHHHHCCChhHHHHH
Q 010642 43 FCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQR----DTVAWNVLISCYIRNQRTRDALCL 118 (505)
Q Consensus 43 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~ 118 (505)
.|++..|++......+.+-. ....|..-..+--..|+.+.|-+.+.+..++ +....-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 37777777777666555522 2233333444455667777777777666543 334455566667777777777777
Q ss_pred HHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCch-------hHHHHHHHHHHhcCCHHHHHHHH
Q 010642 119 FDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKM-------NLCNSLIAMYSKCGSLGMAFEVF 191 (505)
Q Consensus 119 ~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~-------~~~~~l~~~y~~~g~~~~A~~~~ 191 (505)
.+++.. . -+-+.........+|.+.|++.....+...+.+.|.-.+. .+|+.+++-....+..+.-...+
T Consensus 176 v~~ll~--~-~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 176 VDQLLE--M-TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHH--h-CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 777655 1 2234455666677777777777777777777777654443 24555655555555555555566
Q ss_pred hcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcC
Q 010642 192 KGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILP 268 (505)
Q Consensus 192 ~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 268 (505)
+..+ +.++..-.+++.-+.+.|+.++|.++..+..+.+..|. ...+-.+.+.++.+.-++..+.-.+.++..|
T Consensus 253 ~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 253 KNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred HhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 6665 34566677777788888888888888888887776665 2223356677777777777777776555544
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 269 NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 269 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
..+.+|...|.+.+.+.+|.+.|+.. ...|+..+|+-+..++.+.|+..+|.+..++...+-
T Consensus 329 --~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 329 --LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred --hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 56777888888888888888888876 777888888888888888888888888888866443
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=3.2e-10 Score=104.89 Aligned_cols=285 Identities=12% Similarity=0.078 Sum_probs=195.5
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCC------ChhHHHHHHHHHHHC
Q 010642 36 AIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQR------DTVAWNVLISCYIRN 109 (505)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~ 109 (505)
+..++-.....+++.+-.+.....|++.+...-+....+.-...|++.|+.+|+.+... |..+|+.++- +++
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~ 310 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHh
Confidence 34556666677778877777777887766666666666666778888888888887652 5667776653 333
Q ss_pred CChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 010642 110 QRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFE 189 (505)
Q Consensus 110 g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~ 189 (505)
.+.+ +..+..-.- .--+-.+.|+..+.+-|+-.++.++|...|+++++.+ |....+|+.+.+-|....+...|.+
T Consensus 311 ~~sk--Ls~LA~~v~--~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 311 DKSK--LSYLAQNVS--NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hhHH--HHHHHHHHH--HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHH
Confidence 3222 112211111 1112234677777888888888888888888888876 5567788888888888888888888
Q ss_pred HHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcC
Q 010642 190 VFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP-DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFG 265 (505)
Q Consensus 190 ~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 265 (505)
.|+... ..|-..|-.+.++|.-.+.+.-|+-.|++.... +| |...|.+|..+|.+.++.++|++.|..... .
T Consensus 386 sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~ 461 (559)
T KOG1155|consen 386 SYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--L 461 (559)
T ss_pred HHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--c
Confidence 888655 356678888888888888888888888888774 44 556788888888888888888888888876 3
Q ss_pred CcCCcchHHHHHHHHHhcCChHHHHHHHHHC-------C-CCCCHH-HHHHHHHHHHhcCchhHHHHHHHHHHHh
Q 010642 266 ILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-------G-VKPDST-IWRTLLGACRIHKHVTLGERVIEHLIEL 331 (505)
Q Consensus 266 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 331 (505)
-..+...+..|.+.|-+.++.++|...|++- | +.|... .---|..-+.+.+++++|.........-
T Consensus 462 ~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 462 GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 3335577888888888888888887776654 2 222221 1122445566777877777766665544
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=1.4e-10 Score=104.76 Aligned_cols=197 Identities=14% Similarity=0.098 Sum_probs=154.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010642 167 KMNLCNSLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSA 243 (505)
Q Consensus 167 ~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 243 (505)
....+..+...|...|++++|...|++..+ .+...+..+...|...|++++|.+.+++..+... .+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 355677778888888888888888886642 3456777788888888999999998888877532 244567777788
Q ss_pred HhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHH
Q 010642 244 CSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLG 321 (505)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 321 (505)
+...|++++|...+++.......+.....+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 88889999999999988764222223456777788889999999999999887 4344 456778888889999999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 322 ERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
...+++..+..|.++..+..++..+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999888777777888888999999999999998887754
No 51
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.39 E-value=1.1e-11 Score=122.71 Aligned_cols=264 Identities=17% Similarity=0.176 Sum_probs=195.7
Q ss_pred HHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 010642 117 CLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE 196 (505)
Q Consensus 117 ~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 196 (505)
.++..+.. .|+.|+.+||..++.-|+..|+.+.|- +|..|.-..++.+..+++.++......++.+.+. +
T Consensus 11 nfla~~e~--~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------e 80 (1088)
T KOG4318|consen 11 NFLALHEI--SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------E 80 (1088)
T ss_pred hHHHHHHH--hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------C
Confidence 34556666 899999999999999999999999999 9999998888999999999999999999887665 7
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHH
Q 010642 197 KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCV 276 (505)
Q Consensus 197 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 276 (505)
|...+|+.|..+|.++|+... |+...+ -...+...++..|.-..-..++..+.-..+.-||.. ..
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~ 145 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NA 145 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HH
Confidence 888999999999999999865 333322 233456667777777777777766544335555544 35
Q ss_pred HHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHH
Q 010642 277 VDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIH-KHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKV 355 (505)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 355 (505)
+....-.|.++.+++++..++..........+++-+... ..+++-....+...+ .+++.+|..++..-...|+.+.|
T Consensus 146 illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e--~~~s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE--APTSETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc--CCChHHHHHHHHHHHhcCchhhH
Confidence 556677888999999998884332111222234444332 233333333333333 46778999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCccccccccc
Q 010642 356 KELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITSEL 422 (505)
Q Consensus 356 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~ 422 (505)
..++.+|+++|++.++.++|.++-| .+....+....+.|++.|+.|+..+..
T Consensus 224 k~ll~emke~gfpir~HyFwpLl~g---------------~~~~q~~e~vlrgmqe~gv~p~seT~a 275 (1088)
T KOG4318|consen 224 KNLLYEMKEKGFPIRAHYFWPLLLG---------------INAAQVFEFVLRGMQEKGVQPGSETQA 275 (1088)
T ss_pred HHHHHHHHHcCCCcccccchhhhhc---------------CccchHHHHHHHHHHHhcCCCCcchhH
Confidence 9999999999999999999987654 122345566778899999999997554
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=2e-09 Score=95.35 Aligned_cols=288 Identities=11% Similarity=0.068 Sum_probs=181.2
Q ss_pred CCCHHHHHHHHhcCCCCChhH---HHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCH--HHHHHHHHHHHhccChHHH
Q 010642 78 FEKSFEACKLFDEIPQRDTVA---WNVLISCYIRNQRTRDALCLFDNLNREESGCKPDD--VTCLLVLQACAHLGALEFG 152 (505)
Q Consensus 78 ~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~--~t~~~ll~~~~~~~~~~~a 152 (505)
.++.++|.+.|-+|.+.|..+ .-+|.+.|-+.|..+.|+.+-+.+... .+...+. ...-.+..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 466777888887777654443 446777778888888888887777551 2222221 3445566777788888888
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhH--------HHHHHHHHHhCCChHHHHHHHHH
Q 010642 153 EKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVS--------WSAMISGLAMNGHGRDAIESFGA 224 (505)
Q Consensus 153 ~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~--------~~~li~~~~~~g~~~~A~~~~~~ 224 (505)
+.+|..+.+.+ .--......|+..|-+..++++|+++-+++.+-+... |--+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 88888877754 3334566777888888888888887776654333322 33344444556777888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHH
Q 010642 225 MQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDST 303 (505)
Q Consensus 225 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~ 303 (505)
..+.+.+ ....-..+.......|+++.|.+.++.+.+. +..--..+...|..+|...|+.++...++.++ ...+...
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 7764322 2222234555677788888888888888775 43334556677778888888888888888776 3344444
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHH---HhCCCHHHHHHHHHHHHhCCCCCC
Q 010642 304 IWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLY---SSVGDWEKVKELREFMNEKGLQTT 370 (505)
Q Consensus 304 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~~~~~~ 370 (505)
.-..+...-....-.+.|...+.+-+...|.- ..+..|+..- +..|++.+-..++..|....++..
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~-~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~ 352 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRKPTM-RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRK 352 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH-HHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhc
Confidence 44444444444455566666666666655543 4455555544 234557777777777765544433
No 53
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.37 E-value=5e-10 Score=109.12 Aligned_cols=232 Identities=17% Similarity=0.167 Sum_probs=177.6
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHc-----C-CCCch-hHHHHHHHHHHhcCCHHHHHHHHhcCCC--------
Q 010642 132 DDVTCLLVLQACAHLGALEFGEKIHRYISEH-----G-YGSKM-NLCNSLIAMYSKCGSLGMAFEVFKGMPE-------- 196 (505)
Q Consensus 132 d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-----~-~~~~~-~~~~~l~~~y~~~g~~~~A~~~~~~m~~-------- 196 (505)
-..|+..+...|...|+++.|..++.+.++. | ..|.+ ...+.+..+|...+++++|..+|+++..
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3467777899999999999999999988765 2 12222 2345578899999999999999988752
Q ss_pred CC---hhHHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCC-CCH-HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCC
Q 010642 197 KD---VVSWSAMISGLAMNGHGRDAIESFGAMQR-----AGVF-PDD-QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGI 266 (505)
Q Consensus 197 ~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 266 (505)
.+ ..+++.|..+|.+.|++++|...++...+ .|.. |.. .-++.+...|...+++++|..++....+.+.-
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 12 34688888899999999999888877643 1222 222 24667777899999999999999887765432
Q ss_pred cC--C----cchHHHHHHHHHhcCChHHHHHHHHHC---------CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 010642 267 LP--N----IHHYGCVVDLLGRAGLLDQAYQLITSM---------GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIE 330 (505)
Q Consensus 267 ~p--~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 330 (505)
.| + ..+++.|...|...|++++|.++++++ +..+. ...++.|...|.+.+++++|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 22 2 356899999999999999999999987 22222 44677888999999999999999988554
Q ss_pred ----hcCCC---CchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 331 ----LKAQE---SGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 331 ----~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
.+|.. ..+|..|+..|.+.|++++|.++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34444 3478899999999999999999998875
No 54
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.37 E-value=4.6e-10 Score=111.42 Aligned_cols=259 Identities=10% Similarity=0.015 Sum_probs=177.4
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCC
Q 010642 16 YLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRD 95 (505)
Q Consensus 16 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 95 (505)
+++-.+...|+.|+..||.+++.-|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 56778889999999999999999999999999998 9999988888889999999999999999887766 788
Q ss_pred hhHHHHHHHHHHHCCChhH---HHHHHHHchhc--cCCCCCCHHHHHHH--------------HHHHHhccChHHHHHHH
Q 010642 96 TVAWNVLISCYIRNQRTRD---ALCLFDNLNRE--ESGCKPDDVTCLLV--------------LQACAHLGALEFGEKIH 156 (505)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~--~~~~~pd~~t~~~l--------------l~~~~~~~~~~~a~~i~ 156 (505)
..+|+.|..+|...||... ..+.+..+... ..|+.--..-+-.. +......|-++.+.++.
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999765 22222222110 01211111111111 11112223333333333
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhc-CCHHHHHHHHhcCC-CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 010642 157 RYISEHGYGSKMNLCNSLIAMYSKC-GSLGMAFEVFKGMP-EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDD 234 (505)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~~~y~~~-g~~~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 234 (505)
..+...... .+... .+.-.... ..+++-...-.... .++..++.+.+..-...|+.+.|..++.+|++.|+..+.
T Consensus 163 ~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 163 AKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred hhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 222111000 00011 11111111 12333333333333 478999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHH
Q 010642 235 QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQA 289 (505)
Q Consensus 235 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 289 (505)
.-|..|+-+ .++...+..++..|... |+.|+..|+.-.+..+...|....+
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~adyvip~l~N~~t~~~ 290 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADYVIPQLSNGQTKYG 290 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHHHHhhhcchhhhhc
Confidence 888888765 78888888889989885 9999999999888887776664333
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.35 E-value=1.5e-08 Score=92.62 Aligned_cols=276 Identities=11% Similarity=0.070 Sum_probs=212.6
Q ss_pred CCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHH
Q 010642 78 FEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEK 154 (505)
Q Consensus 78 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~ 154 (505)
.|++..|++...+-.+ .....|..-..+--+.|+.+.|-.++.+..+ ..-.++.....+........|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae--~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAE--LAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhc--cCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 6999999999987654 3455666677788889999999999999866 2224455566677777889999999999
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-----------hhHHHHHHHHHHhCCChHHHHHHHH
Q 010642 155 IHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKD-----------VVSWSAMISGLAMNGHGRDAIESFG 223 (505)
Q Consensus 155 i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~ 223 (505)
-..++.+.+ +-++.+......+|.+.|++.....+...+.+.. ..+|+.++.-....+..+.-...|+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999998886 6678899999999999999999999999987642 2367777766655555555555666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC----CCC
Q 010642 224 AMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM----GVK 299 (505)
Q Consensus 224 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~ 299 (505)
..... .+-+...-.+++.-+.+.|+.++|.++..+..+. +..|+. +..-...+-++...-.+..++- +..
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCC
Confidence 65443 4445566677888899999999999999999886 766661 1112234556655555444443 444
Q ss_pred CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 300 PDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 300 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
+-.+.+|...|.+++.+.+|...|+...+..|. ..+|..+..++.+.|+..+|.+++++-...
T Consensus 328 --p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 328 --PLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred --hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 477889999999999999999999988887765 579999999999999999999999887643
No 56
>PF13041 PPR_2: PPR repeat family
Probab=99.34 E-value=3.9e-12 Score=83.67 Aligned_cols=50 Identities=28% Similarity=0.547 Sum_probs=46.3
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 010642 197 KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSH 246 (505)
Q Consensus 197 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 246 (505)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999874
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.32 E-value=1.9e-09 Score=109.93 Aligned_cols=261 Identities=12% Similarity=0.013 Sum_probs=187.8
Q ss_pred CChhHHHHHHHHHHH-----CCChhHHHHHHHHchhccCCCCCCH-HHHHHHHHHHH---------hccChHHHHHHHHH
Q 010642 94 RDTVAWNVLISCYIR-----NQRTRDALCLFDNLNREESGCKPDD-VTCLLVLQACA---------HLGALEFGEKIHRY 158 (505)
Q Consensus 94 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~pd~-~t~~~ll~~~~---------~~~~~~~a~~i~~~ 158 (505)
.+..+|...+.+-.. .+..++|+.+|++..+ ..|+. ..+..+..++. ..+++++|...+++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~----ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVN----MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHh----cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 355666666665422 2346789999999976 55653 44555544433 22447899999999
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 010642 159 ISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE--K-DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQ 235 (505)
Q Consensus 159 ~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 235 (505)
+++.+ |.+..++..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+..
T Consensus 330 Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~ 406 (553)
T PRK12370 330 ATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRA 406 (553)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCh
Confidence 99986 66788899999999999999999999998753 3 4567888899999999999999999999885 44432
Q ss_pred -HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHH-HHHHHHHH
Q 010642 236 -TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDST-IWRTLLGA 311 (505)
Q Consensus 236 -t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~ 311 (505)
.+..++..+...|++++|...+++..+. .+| ++..+..+...|...|++++|...++++ ...|+.. .++.+...
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~ 484 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAE 484 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 2333444566689999999999998763 234 3445677888899999999999999988 4455544 44555556
Q ss_pred HHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 312 CRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 312 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
+...| +.|...++.+.+.....+..+..+...|.-.|+-+.+... +++.+.|
T Consensus 485 ~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 485 YCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 66777 4788878887765432222333366677777887777776 7777665
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=6.6e-09 Score=98.74 Aligned_cols=261 Identities=12% Similarity=0.004 Sum_probs=210.0
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHH
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSL 174 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 174 (505)
++........-+...+++.+.+++++.... ..++....+..-|..+...|+..+-..+=.++++. .|..+.+|-++
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle---~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLE---KDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHh---hCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 455555566678889999999999999877 35566666666677888888877777776677776 47788999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 010642 175 IAMYSKCGSLGMAFEVFKGMPEKD---VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVD 251 (505)
Q Consensus 175 ~~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 251 (505)
.--|.-.|+.++|++.|.+...-| ...|-.+..+|+-.|..++|+..|...-+. ++-....+.-+.--|.+.++.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHH
Confidence 999999999999999999876433 358999999999999999999998887653 1112223344555788899999
Q ss_pred HHHHHHHHHhhhcCCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC--------CCCC-CHHHHHHHHHHHHhcCchhHH
Q 010642 252 EGMMFLDRMSKDFGILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM--------GVKP-DSTIWRTLLGACRIHKHVTLG 321 (505)
Q Consensus 252 ~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p-~~~~~~~ll~~~~~~g~~~~a 321 (505)
.|.++|.+.. ++.| |+...+-+.-.....+.+.+|..+|+.. +-.+ -..+++.|..++++.+.+++|
T Consensus 398 LAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 398 LAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 9999999987 5555 5667777777777788999999998876 1111 345688899999999999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 322 ERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
+..+++.+.+.|.+..+|.++.-.|...|+++.|...|.+..
T Consensus 475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998754
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.28 E-value=2.2e-09 Score=96.90 Aligned_cols=161 Identities=14% Similarity=0.064 Sum_probs=82.5
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 010642 96 TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLI 175 (505)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~ 175 (505)
...+..+...+...|++++|...+++... . .+.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~--~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALE--H-DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--h-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 45566666777777777777777776655 1 22334555556666666666666666666666553 33444555555
Q ss_pred HHHHhcCCHHHHHHHHhcCCCC-----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 010642 176 AMYSKCGSLGMAFEVFKGMPEK-----DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLV 250 (505)
Q Consensus 176 ~~y~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 250 (505)
..|...|++++|.+.|++.... ....+..+...+...|++++|...|.+...... .+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCH
Confidence 5555555555555555554321 122333344444444444444444444443211 1222333344444444444
Q ss_pred HHHHHHHHHHh
Q 010642 251 DEGMMFLDRMS 261 (505)
Q Consensus 251 ~~a~~~~~~~~ 261 (505)
++|...+++..
T Consensus 186 ~~A~~~~~~~~ 196 (234)
T TIGR02521 186 KDARAYLERYQ 196 (234)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=1.2e-11 Score=81.26 Aligned_cols=50 Identities=32% Similarity=0.569 Sum_probs=44.5
Q ss_pred CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHh
Q 010642 94 RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAH 145 (505)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~ 145 (505)
||+++||++|.+|++.|++++|+++|++|.+ .|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~--~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKK--RGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHcC
Confidence 6888999999999999999999999999988 8999999999999988864
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.25 E-value=1.5e-09 Score=110.65 Aligned_cols=256 Identities=9% Similarity=-0.058 Sum_probs=173.1
Q ss_pred CChhhHHHHHHHHH-----ccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHH---------hCCCHHHHHHHHhcCCC
Q 010642 28 TNPFACSFAIKCCM-----KFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYS---------TFEKSFEACKLFDEIPQ 93 (505)
Q Consensus 28 p~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~ 93 (505)
.+...|...+.+-. ..+++++|.+.++++++.. +.+...+..+...|. ..+++++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 34444444444421 2245788899999888775 334556665555443 22457888888887765
Q ss_pred ---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC-HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchh
Q 010642 94 ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD-DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMN 169 (505)
Q Consensus 94 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~ 169 (505)
.+..+|..+...+...|++++|...|++..+ ..|+ ...+..+..++...|++++|...++++.+.. |.+..
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~----l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~ 407 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL----LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAA 407 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChh
Confidence 3677888888888899999999999999877 3344 5667778888889999999999999988875 33444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC---C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHH
Q 010642 170 LCNSLIAMYSKCGSLGMAFEVFKGMPE---K-DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQT-FTGVLSAC 244 (505)
Q Consensus 170 ~~~~l~~~y~~~g~~~~A~~~~~~m~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~ 244 (505)
.+..++..+...|++++|...+++..+ | ++..+..+..+|...|+.++|...+.++... .|+..+ .+.+...+
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHH
Confidence 444455567778899999998887642 3 4455777788888999999999999887653 444443 34444456
Q ss_pred hccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC
Q 010642 245 SHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 296 (505)
...| +.|...++.+.+...-.|....+.. ..|.-.|+-+.+..+ +++
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~-~~~ 532 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGLLP--LVLVAHGEAIAEKMW-NKF 532 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchHHH--HHHHHHhhhHHHHHH-HHh
Confidence 6666 4777777777664344444334433 335556666666666 665
No 62
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=4.2e-09 Score=100.05 Aligned_cols=274 Identities=14% Similarity=0.115 Sum_probs=139.4
Q ss_pred cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHH
Q 010642 8 SSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKL 87 (505)
Q Consensus 8 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 87 (505)
.+++.+...+++...+.. +++...+..-|.++...|+..+-..+-.++++. .|..+.+|-++.-.|...|+.++|++.
T Consensus 257 ~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry 334 (611)
T KOG1173|consen 257 GCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRY 334 (611)
T ss_pred cChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHH
Confidence 445555555555555542 233334444444455555544444444444433 233445555555555555555555555
Q ss_pred HhcCCCCC---hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCC
Q 010642 88 FDEIPQRD---TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGY 164 (505)
Q Consensus 88 ~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~ 164 (505)
|.+...-| ...|-.....|+-.|..++|+..+...-+...| ....+--+.--|.+.++++.|.+.|.++....
T Consensus 335 ~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G---~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~- 410 (611)
T KOG1173|consen 335 FSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG---CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA- 410 (611)
T ss_pred HHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC---CcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-
Confidence 55443321 234555555555555555555555444331111 11112222333445555555555555555542
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010642 165 GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSAC 244 (505)
Q Consensus 165 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 244 (505)
|.|+.+.+-+.-++...+.+.+|...|+....+ .+..... ...-..+++.|..+|
T Consensus 411 P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~------------------------ik~~~~e-~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 411 PSDPLVLHELGVVAYTYEEYPEALKYFQKALEV------------------------IKSVLNE-KIFWEPTLNNLGHAY 465 (611)
T ss_pred CCcchhhhhhhheeehHhhhHHHHHHHHHHHHH------------------------hhhcccc-ccchhHHHHhHHHHH
Confidence 445555555555555555555555555433200 0000000 001234566666677
Q ss_pred hccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHHHHHHHHHHHHh
Q 010642 245 SHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDSTIWRTLLGACRI 314 (505)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~ 314 (505)
.+.+.+++|+..++.... -.+.+..++.++.-.|...|+++.|.+.|.+. .++|+..+-..++..+..
T Consensus 466 Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 777777777777776665 34445666666666677777777777777666 666766666666655443
No 63
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.21 E-value=1.3e-07 Score=88.17 Aligned_cols=351 Identities=11% Similarity=0.100 Sum_probs=237.6
Q ss_pred hcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHH
Q 010642 7 MSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACK 86 (505)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 86 (505)
++.....|..++++....=++.|..-|. -+..=-..|++..|+++|+.-.. ..|+...|++.|+.=.+-..++.|..
T Consensus 119 knk~vNhARNv~dRAvt~lPRVdqlWyK-Y~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~ 195 (677)
T KOG1915|consen 119 KNKQVNHARNVWDRAVTILPRVDQLWYK-YIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARS 195 (677)
T ss_pred hhhhHhHHHHHHHHHHHhcchHHHHHHH-HHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHH
Confidence 4556667777777777654444433222 23333455777788888877654 36777788888877777777888888
Q ss_pred HHhcCC--CCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCC-CCCHHHHHHHHHHHHhccChHHHHHHHHHH----
Q 010642 87 LFDEIP--QRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGC-KPDDVTCLLVLQACAHLGALEFGEKIHRYI---- 159 (505)
Q Consensus 87 ~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~---- 159 (505)
++++.. .|++.+|--...--.+.|+...|..+|...... -|- ..+...|++....=.+...++.|.-+|..+
T Consensus 196 IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~-~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~ 274 (677)
T KOG1915|consen 196 IYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF-LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI 274 (677)
T ss_pred HHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 877654 467777777666666777777777777666541 110 011122222222222223333333333322
Q ss_pred ----------------------------------------HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC--
Q 010642 160 ----------------------------------------SEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEK-- 197 (505)
Q Consensus 160 ----------------------------------------~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~-- 197 (505)
++.+ +.|-.+|--.+..-...|+.+...++|++....
T Consensus 275 pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvp 353 (677)
T KOG1915|consen 275 PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVP 353 (677)
T ss_pred CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Confidence 2222 445556666777777889999999999987532
Q ss_pred Ch---hHHHHHHH--------HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hccCCHHHHHHHHHHHhh
Q 010642 198 DV---VSWSAMIS--------GLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSAC----SHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 198 ~~---~~~~~li~--------~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~----~~~g~~~~a~~~~~~~~~ 262 (505)
.. ..|...|- .=....+.+.+.++|+...+. ++-..+||..+--.| .++.++..|.+++...+
T Consensus 354 p~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI- 431 (677)
T KOG1915|consen 354 PASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI- 431 (677)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh-
Confidence 11 12332221 113467889999999998883 333456776554444 36788999999999887
Q ss_pred hcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC--Cch
Q 010642 263 DFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQE--SGD 338 (505)
Q Consensus 263 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~ 338 (505)
|.-|...++...|..=.+.+.++....++++. ...| |-.+|......-...|+.+.|..+|+-++.....+ ...
T Consensus 432 --G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpell 509 (677)
T KOG1915|consen 432 --GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELL 509 (677)
T ss_pred --ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHH
Confidence 88999999999999999999999999999988 5666 57799998888899999999999999988765222 235
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 339 YVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 339 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
|...|+.-...|.++.|..+++++.+..
T Consensus 510 wkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 510 WKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 6667777788999999999999998754
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=1.1e-09 Score=96.90 Aligned_cols=230 Identities=13% Similarity=0.021 Sum_probs=160.5
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHH
Q 010642 132 DDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE--K-DVVSWSAMISG 208 (505)
Q Consensus 132 d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~ 208 (505)
|-.--+.+.++|.+.|.+.+|++.++..++. .|.+.+|-.|..+|.+..+...|+.+|.+-.+ | |+....-+...
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHH
Confidence 3333345666677777777777776666654 34555666667777777777777777766543 2 33333445556
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHH
Q 010642 209 LAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQ 288 (505)
Q Consensus 209 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 288 (505)
+-..++.++|.++|+...+.. ..+.....++...|.-.++++-|..+++++.+. |+ .++..|+.+.-+|.-.+++|-
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhh
Confidence 666677777777777766542 223445555666666677777777777777764 54 345566666666666777777
Q ss_pred HHHHHHHC---CCCCC--HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 289 AYQLITSM---GVKPD--STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 289 A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
++.-|.+. .-.|+ ..+|..|.......||+..|.+.|+..+..++++...++.|.-.-.+.|+++.|..+++...
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 77766665 22343 45788888888889999999999999999999999999999999999999999999998876
Q ss_pred hCC
Q 010642 364 EKG 366 (505)
Q Consensus 364 ~~~ 366 (505)
+..
T Consensus 457 s~~ 459 (478)
T KOG1129|consen 457 SVM 459 (478)
T ss_pred hhC
Confidence 543
No 65
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.16 E-value=1.8e-07 Score=92.65 Aligned_cols=258 Identities=16% Similarity=0.088 Sum_probs=173.3
Q ss_pred ccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC----
Q 010642 3 RAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTF---- 78 (505)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---- 78 (505)
..+...|++++|++.++.-... +......+......+.+.|+.++|..++..+++.+ +.|..-|..|..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence 3467889999999999875543 33234456667788899999999999999999997 44666666666665222
Q ss_pred -CCHHHHHHHHhcCCC--C-------------C--------------------hhHHHHHHHHHHHCCChhHHHHHHHHc
Q 010642 79 -EKSFEACKLFDEIPQ--R-------------D--------------------TVAWNVLISCYIRNQRTRDALCLFDNL 122 (505)
Q Consensus 79 -g~~~~A~~~~~~~~~--~-------------~--------------------~~~~~~li~~~~~~g~~~~A~~~~~~m 122 (505)
.+.+....+++.+.+ | + +..++.|-..|.......-..+++...
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 246677777776532 0 1 123444444444333333344444444
Q ss_pred hhcc--C----------CCCCCH--HHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 010642 123 NREE--S----------GCKPDD--VTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAF 188 (505)
Q Consensus 123 ~~~~--~----------~~~pd~--~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~ 188 (505)
.... . .-+|.. .++..+...+...|++++|.++.+.++++. |..+..|..-...|-+.|++++|.
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa 248 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAA 248 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 3210 1 112333 344556677788888999998888888875 445778888888888899999888
Q ss_pred HHHhcCCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHhccCCHHHHHHHH
Q 010642 189 EVFKGMPEK---DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQT--------FTGVLSACSHCGLVDEGMMFL 257 (505)
Q Consensus 189 ~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--------~~~ll~~~~~~g~~~~a~~~~ 257 (505)
+.++...+- |-..=+-.+..+.+.|+.++|.+++......+..|-... ......+|.+.|++..|.+.|
T Consensus 249 ~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~ 328 (517)
T PF12569_consen 249 EAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRF 328 (517)
T ss_pred HHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 888876643 445556667778888999999888888877665443211 134456788888888888888
Q ss_pred HHHhhh
Q 010642 258 DRMSKD 263 (505)
Q Consensus 258 ~~~~~~ 263 (505)
..+.+.
T Consensus 329 ~~v~k~ 334 (517)
T PF12569_consen 329 HAVLKH 334 (517)
T ss_pred HHHHHH
Confidence 877664
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.16 E-value=7.1e-09 Score=101.18 Aligned_cols=233 Identities=15% Similarity=0.094 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHchhc---cCC-CCCCHHHH-HHHHHHHHhccChHHHHHHHHHHHHc-----C--CC
Q 010642 98 AWNVLISCYIRNQRTRDALCLFDNLNRE---ESG-CKPDDVTC-LLVLQACAHLGALEFGEKIHRYISEH-----G--YG 165 (505)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~-~~pd~~t~-~~ll~~~~~~~~~~~a~~i~~~~~~~-----~--~~ 165 (505)
+...+...|...|++++|..+++...+. ..| ..|...+. ..+...|...+++++|..+|+.+... | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4455889999999999999999888661 011 23444433 34677888999999999999988763 2 12
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC----------CCh-hHHHHHHHHHHhCCChHHHHHHHHHHHHC---CCC
Q 010642 166 SKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE----------KDV-VSWSAMISGLAMNGHGRDAIESFGAMQRA---GVF 231 (505)
Q Consensus 166 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~----------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~ 231 (505)
.-..+++.|..+|.+.|++++|...+++..+ +.+ ..++.++..+...+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2245677788899999999998888776531 222 24667778889999999999999876531 133
Q ss_pred CCH----HHHHHHHHHHhccCCHHHHHHHHHHHhhhc-----CCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC-----
Q 010642 232 PDD----QTFTGVLSACSHCGLVDEGMMFLDRMSKDF-----GILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM----- 296 (505)
Q Consensus 232 p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~----- 296 (505)
++. .+++.+...|.+.|++++|..+|++.+... +..+ ....++.|...|.+.+++.+|.++|.+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 333 578999999999999999999999988652 1122 2446788888999999999999998876
Q ss_pred ---CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 010642 297 ---GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIE 330 (505)
Q Consensus 297 ---~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 330 (505)
+-.|+ ..+|..|...|...|+++.|+++.+.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33455 45899999999999999999999998764
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.14 E-value=5.9e-08 Score=90.71 Aligned_cols=222 Identities=9% Similarity=-0.028 Sum_probs=139.1
Q ss_pred CChhHHHHHHHHchhccCCCCCC--HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 010642 110 QRTRDALCLFDNLNREESGCKPD--DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMA 187 (505)
Q Consensus 110 g~~~~A~~~~~~m~~~~~~~~pd--~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A 187 (505)
+..+.++.-+.++... ....|+ ...|..+...+...|+.++|...|.++++.. |.+..+|+.+...|...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~-~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILAS-RDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHcc-ccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3455566666555531 122222 2445566666777777777777777777764 55677788888888888888888
Q ss_pred HHHHhcCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhc
Q 010642 188 FEVFKGMPE--K-DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDF 264 (505)
Q Consensus 188 ~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 264 (505)
...|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|.+...
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~-- 193 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE-- 193 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--
Confidence 888877643 2 4567777778888888888888888888774 44443222222233456778888888876554
Q ss_pred CCcCCcchHHHHHHHHHhcCChHHH--HHHHHHC-CC----CC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCC
Q 010642 265 GILPNIHHYGCVVDLLGRAGLLDQA--YQLITSM-GV----KP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQES 336 (505)
Q Consensus 265 ~~~p~~~~~~~li~~~~~~g~~~~A--~~~~~~~-~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 336 (505)
...|+...+ .++. ...|++.++ .+.+.+. .. .| ....|..+...+...|++++|...|+++.+..|++.
T Consensus 194 ~~~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 194 KLDKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred hCCccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 333333222 2332 334554433 2222221 11 12 234788888889999999999999999999887654
Q ss_pred chHH
Q 010642 337 GDYV 340 (505)
Q Consensus 337 ~~~~ 340 (505)
.-+.
T Consensus 271 ~e~~ 274 (296)
T PRK11189 271 VEHR 274 (296)
T ss_pred HHHH
Confidence 4333
No 68
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.6e-07 Score=86.19 Aligned_cols=298 Identities=10% Similarity=-0.005 Sum_probs=197.7
Q ss_pred hHHHHHHHHHcc--CCcHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHH---HHHH
Q 010642 32 ACSFAIKCCMKF--CSLMGGLQIHARVLRD-GYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNV---LISC 105 (505)
Q Consensus 32 ~~~~ll~~~~~~--~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~ 105 (505)
+...-+.+++.. ++-..+.+.+..+... -++-|+....++.+.|...|+.++|+..|++...-|+.+... ..-.
T Consensus 196 wls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~L 275 (564)
T KOG1174|consen 196 WLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVL 275 (564)
T ss_pred HHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHH
Confidence 333334444433 3334444444444332 356677788888888888999999999998766544333222 2334
Q ss_pred HHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 010642 106 YIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLG 185 (505)
Q Consensus 106 ~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~ 185 (505)
+.+.|+++.-..+...+.. ...-....|..-+...-..++++.|..+-++.++.+ +.+...+-.-...+...|+.+
T Consensus 276 L~~eg~~e~~~~L~~~Lf~---~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~ 351 (564)
T KOG1174|consen 276 LGQEGGCEQDSALMDYLFA---KVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHT 351 (564)
T ss_pred HHhccCHhhHHHHHHHHHh---hhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchH
Confidence 5667888877777776654 111233334334444456677888888877777764 344555555566777888899
Q ss_pred HHHHHHhcCC--C-CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-ccCCHHHHHHHHHHH
Q 010642 186 MAFEVFKGMP--E-KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVL-SACS-HCGLVDEGMMFLDRM 260 (505)
Q Consensus 186 ~A~~~~~~m~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~-~~g~~~~a~~~~~~~ 260 (505)
+|.-.|+... . -+..+|..|+.+|...|++.+|.-+-+...+. +.-+..+...+. ..|. ....-++|.++++.-
T Consensus 352 ~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 352 QAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 8888887654 3 36788999999999999998888776665442 223445554442 2222 223346788887776
Q ss_pred hhhcCCcCC-cchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCc
Q 010642 261 SKDFGILPN-IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESG 337 (505)
Q Consensus 261 ~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 337 (505)
. .+.|+ ....+.+...+...|+..++..++++. ...||...-+.|...++..+.+++|...|..++..+|.+..
T Consensus 431 L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 431 L---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred h---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 5 44565 335566777888889999999998887 66788888888888888888999999999999888887743
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.09 E-value=9.1e-08 Score=89.44 Aligned_cols=188 Identities=14% Similarity=-0.004 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC-HHHHHHHHHH
Q 010642 67 LMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD-DVTCLLVLQA 142 (505)
Q Consensus 67 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~t~~~ll~~ 142 (505)
.|..+...|...|+.++|...|++..+ .+..+|+.+...+...|++++|+..|++..+ +.|+ ..++..+..+
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~----l~P~~~~a~~~lg~~ 141 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE----LDPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHH
Confidence 344455555555555555555554432 2445555555566666666666666555544 2332 3444555555
Q ss_pred HHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-CChhHHHHHHHHHHhCCChHHHHHH
Q 010642 143 CAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE-KDVVSWSAMISGLAMNGHGRDAIES 221 (505)
Q Consensus 143 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~ 221 (505)
+...|++++|.+.++...+.. |.+. ........+...++.++|...|.+... .+...|.. ...+...|+..++ +.
T Consensus 142 l~~~g~~~eA~~~~~~al~~~-P~~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~~~~lg~~~~~-~~ 217 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDD-PNDP-YRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-NIVEFYLGKISEE-TL 217 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCH-HHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH-HHHHHHccCCCHH-HH
Confidence 555566666666665555543 1122 111111223334556666666543221 12222221 1222233444333 23
Q ss_pred HHHHHHCC-----CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 010642 222 FGAMQRAG-----VFP-DDQTFTGVLSACSHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 222 ~~~m~~~g-----~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (505)
+..+.+.. +.| ...+|..+...+.+.|+.++|...|++..+
T Consensus 218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33333210 011 123455666666666666666666666664
No 70
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=1e-06 Score=79.29 Aligned_cols=189 Identities=12% Similarity=0.083 Sum_probs=115.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCC-------hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 010642 173 SLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGH-------GRDAIESFGAMQRAGVFPDDQ-TFTGVLSAC 244 (505)
Q Consensus 173 ~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~ 244 (505)
.|+--|.+.+++++|..+.+.....++.-|-.-...++..|+ ..-|.+.|+-.-.++..-|.. --.++.+++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 355567788888888888888765555444333333334433 334444454443444333332 223444555
Q ss_pred hccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCC-CCHHHHHHHH-HHHHhcCchhHH
Q 010642 245 SHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVK-PDSTIWRTLL-GACRIHKHVTLG 321 (505)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll-~~~~~~g~~~~a 321 (505)
.-..++++.+-+++.+.. +-...|...+ .+.++++..|.+.+|+++|-++ +.+ .|..+|-+++ ++|...+..+.|
T Consensus 370 FL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 555678888888888876 2333344333 5678888889999999988877 222 3566666555 566777877776
Q ss_pred HHHHHHHHHhc-CCCC-chHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 322 ERVIEHLIELK-AQES-GDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 322 ~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
-. .+++.+ |.+. .....+.+-|.+++.+--|.+.|+.+....
T Consensus 448 W~---~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 448 WD---MMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred HH---HHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 44 445544 2222 233356677888888888888888877654
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.02 E-value=2.1e-07 Score=79.01 Aligned_cols=197 Identities=14% Similarity=0.037 Sum_probs=126.1
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhC
Q 010642 136 CLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMN 212 (505)
Q Consensus 136 ~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~ 212 (505)
...+.-.|.+.|+...|+.-+++++++. |.+..++..+...|.+.|..+.|.+-|++.. ..+-...|....-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 3444555666666666666666666664 4455566666666666666666666666543 23445566666666777
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHH
Q 010642 213 GHGRDAIESFGAMQRAGVFPD-DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQ 291 (505)
Q Consensus 213 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 291 (505)
|++++|...|++.....--|. ..||..+.-+..+.|+.+.|..+|++..+. .+-.......+.+...+.|++..|..
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHH
Confidence 777777777777765422222 246666666677777777777777777652 22334556667777777777777777
Q ss_pred HHHHC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 010642 292 LITSM--GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQE 335 (505)
Q Consensus 292 ~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 335 (505)
+++.. ...++..+....|..-...|+.+.+-+.=..+....|.+
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 77766 333666666666777777777777777666666666654
No 72
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.01 E-value=1.7e-07 Score=92.81 Aligned_cols=255 Identities=11% Similarity=0.054 Sum_probs=149.5
Q ss_pred HHHHCCChhHHHHHHHHchhccCCCCCCH-HHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-
Q 010642 105 CYIRNQRTRDALCLFDNLNREESGCKPDD-VTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCG- 182 (505)
Q Consensus 105 ~~~~~g~~~~A~~~~~~m~~~~~~~~pd~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g- 182 (505)
.+...|++++|++.+..-.. ..+|. ..+......+.+.|+.++|..++..+++.+ |.+...|..|..+..-..
T Consensus 13 il~e~g~~~~AL~~L~~~~~----~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEK----QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhh----hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 34556666666666655422 33343 333444555666666666666666666665 444445555555542221
Q ss_pred ----CHHHHHHHHhcCCCCCh--hHHHHHHHHHHhCCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010642 183 ----SLGMAFEVFKGMPEKDV--VSWSAMISGLAMNGHG-RDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMM 255 (505)
Q Consensus 183 ----~~~~A~~~~~~m~~~~~--~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 255 (505)
..+...++|+++.+.-+ .+...+.-.+.....+ ..+...+..+...|+++ +|+.|-.-|....+.+-...
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 34555555555532211 1111111112211122 23444556666777653 44555555555555555555
Q ss_pred HHHHHhhhc-------------CCcCCc--chHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCch
Q 010642 256 FLDRMSKDF-------------GILPNI--HHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHV 318 (505)
Q Consensus 256 ~~~~~~~~~-------------~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~ 318 (505)
++....... .-+|+. .++.-+...|...|++++|++++++. ...|+ +..|..-...+...|++
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH
Confidence 555544321 112333 23355567778888888888888876 66676 44666777778888888
Q ss_pred hHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 010642 319 TLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGL 367 (505)
Q Consensus 319 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 367 (505)
.+|...++.+.++++.+...-.-.+..+.+.|++++|.+++....+.+.
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 8888888888888877766666667777888888888888888876665
No 73
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=1.7e-06 Score=81.30 Aligned_cols=321 Identities=9% Similarity=-0.041 Sum_probs=205.0
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhCCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHH
Q 010642 33 CSFAIKCCMKFCSLMGGLQIHARVLRDGYQLD-SQLMTTLMDLYSTFEKSFEACKLFDEIPQRD---TVAWNVLISCYIR 108 (505)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~ 108 (505)
+....+-|-+.|.+++|++.+.+++.. .|| +..|......|...|++++..+--....+-+ +.++..-.+++-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 344455677889999999999999876 466 7888888889999999998888776665533 3345555566777
Q ss_pred CCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHH-cC--CCCchhHHHHHHH---------
Q 010642 109 NQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISE-HG--YGSKMNLCNSLIA--------- 176 (505)
Q Consensus 109 ~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~-~~--~~~~~~~~~~l~~--------- 176 (505)
.|++++|+.-..-..-. .++. |..+-..+=+.+- ..|+.-..+-.+ .+ .-|.+....+...
T Consensus 196 lg~~~eal~D~tv~ci~-~~F~-n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCIL-EGFQ-NASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred hccHHHHHHhhhHHHHh-hhcc-cchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccc
Confidence 77777765433222110 1111 1111000000000 111111111111 11 1111111111111
Q ss_pred --------------HH----Hhc-CCHHHHHHHHhcCC-------CCC---------hhHHHHHHHHHHhCCChHHHHHH
Q 010642 177 --------------MY----SKC-GSLGMAFEVFKGMP-------EKD---------VVSWSAMISGLAMNGHGRDAIES 221 (505)
Q Consensus 177 --------------~y----~~~-g~~~~A~~~~~~m~-------~~~---------~~~~~~li~~~~~~g~~~~A~~~ 221 (505)
++ .+. ..+..|...+.+-. ..+ ..+...-..-+.-.|+.-.|..-
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 11 110 02223332222110 111 11222222234557889999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC
Q 010642 222 FGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP 300 (505)
Q Consensus 222 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 300 (505)
|+........++.. |.-+...|....+.++.++.|+...+ -.+-++.+|..-.+++.-.+++++|..-|++. .+.|
T Consensus 349 ~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~--ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p 425 (606)
T KOG0547|consen 349 FDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAED--LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP 425 (606)
T ss_pred HHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHh--cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh
Confidence 99999865554442 77777889999999999999999975 23335677777778888889999999999998 7777
Q ss_pred C-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 301 D-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 301 ~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
+ ...|-.+-.+..+.+++++++..|++.++.-|..+..|+....++...++++.|.+.|+...+.
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 4 4567667677778889999999999999999999999999999999999999999999987653
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=2.3e-08 Score=88.79 Aligned_cols=229 Identities=10% Similarity=0.061 Sum_probs=194.2
Q ss_pred HHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 010642 100 NVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYS 179 (505)
Q Consensus 100 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~ 179 (505)
+.|..+|.+.|.+.+|...|+.-.. ..|-+.||..+-++|.+..+...|..++.+-++. +|-|+.........+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~----q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT----QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh----cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHH
Confidence 6788999999999999999988866 4677788999999999999999999999988876 4667777778889999
Q ss_pred hcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010642 180 KCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMF 256 (505)
Q Consensus 180 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 256 (505)
..++.++|.++|+...+ .++.+...+..+|.-.++++-|+..|+++.+.|+. +...|+.+.-+|.-.+++|-+..-
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999998764 35666777778899999999999999999999987 778888898899999999999999
Q ss_pred HHHHhhhcCCcCC--cchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 257 LDRMSKDFGILPN--IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 257 ~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
|.+.... --.|+ ..+|-.+.......|++.-|.+-|+-. ...| +...++.|...-.+.|+++.|..+++......
T Consensus 381 f~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9988764 33343 457888888888999999999999887 3233 56789999988899999999999999998887
Q ss_pred CCC
Q 010642 333 AQE 335 (505)
Q Consensus 333 ~~~ 335 (505)
|+-
T Consensus 460 P~m 462 (478)
T KOG1129|consen 460 PDM 462 (478)
T ss_pred ccc
Confidence 653
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.99 E-value=8.9e-08 Score=81.26 Aligned_cols=162 Identities=14% Similarity=0.021 Sum_probs=110.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHH
Q 010642 202 WSAMISGLAMNGHGRDAIESFGAMQRAGVFPD-DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLL 280 (505)
Q Consensus 202 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 280 (505)
...+.-+|.+.|+...|..-+++..+. .|+ ..++..+...|.+.|..+.|.+-|+...+. -+-+-.+.|....-+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHH
Confidence 444556677777777777777777664 333 346666666777777777777777777642 222455666677777
Q ss_pred HhcCChHHHHHHHHHC---CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHH
Q 010642 281 GRAGLLDQAYQLITSM---GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVK 356 (505)
Q Consensus 281 ~~~g~~~~A~~~~~~~---~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 356 (505)
|..|++++|...|++. +.-| -..+|..+.-+..+.|+.+.|...+++.++.+|..+.+...+.....+.|++..|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 7777777777777776 2222 24467777767777788888888888888877777777777777777888888887
Q ss_pred HHHHHHHhCCC
Q 010642 357 ELREFMNEKGL 367 (505)
Q Consensus 357 ~~~~~m~~~~~ 367 (505)
..++.....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 77777665554
No 76
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=4.7e-06 Score=80.19 Aligned_cols=348 Identities=14% Similarity=0.115 Sum_probs=213.1
Q ss_pred ccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHH
Q 010642 3 RAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSF 82 (505)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 82 (505)
+-+.++|++++|+....+++..+ +-|...+..-+-++.+.+.+++|+.+.+.-.. ...+.+.+---.....+.+..+
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHcccHH
Confidence 34567899999999999999876 33556777777788899999999855433211 0111111111122334678899
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCC----------------------------CCCHH
Q 010642 83 EACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGC----------------------------KPDDV 134 (505)
Q Consensus 83 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----------------------------~pd~~ 134 (505)
+|...++.....|..+...-...+-+.|++++|+++|+.+.++ +. .| ..
T Consensus 97 ealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn--~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~-e~ 173 (652)
T KOG2376|consen 97 EALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN--NSDDQDEERRANLLAVAAALQVQLLQSVPEVP-ED 173 (652)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhHHHHHhccCCC-cc
Confidence 9999988666556556666667788889999999999888552 21 11 12
Q ss_pred HHHHHHH---HHHhccChHHHHHHHHHHHHcC-------CCC------ch-hHHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 010642 135 TCLLVLQ---ACAHLGALEFGEKIHRYISEHG-------YGS------KM-NLCNSLIAMYSKCGSLGMAFEVFKGMPEK 197 (505)
Q Consensus 135 t~~~ll~---~~~~~~~~~~a~~i~~~~~~~~-------~~~------~~-~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 197 (505)
+|..+.+ .+...|++.+|++++....+.+ -.. +. .+--.|..++-..|+.++|.++|....+.
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 4444433 2356688999999888873321 000 01 12334666777889999999888765421
Q ss_pred ---C----------hhH----------------------------------------HH-HHHHHHH-------------
Q 010642 198 ---D----------VVS----------------------------------------WS-AMISGLA------------- 210 (505)
Q Consensus 198 ---~----------~~~----------------------------------------~~-~li~~~~------------- 210 (505)
| .++ .| .++..|.
T Consensus 254 ~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l 333 (652)
T KOG2376|consen 254 NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL 333 (652)
T ss_pred cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC
Confidence 0 000 00 0111110
Q ss_pred -------------------hCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHH--------HHh
Q 010642 211 -------------------MNGHGRDAIESFGAMQRAGVFPDD--QTFTGVLSACSHCGLVDEGMMFLD--------RMS 261 (505)
Q Consensus 211 -------------------~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~--------~~~ 261 (505)
+...+..|.+++....+. .|.. ......++.....|+++.|.+++. .+.
T Consensus 334 p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~ 411 (652)
T KOG2376|consen 334 PGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSIL 411 (652)
T ss_pred CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhh
Confidence 001122222222222221 1222 233344455567899999999888 444
Q ss_pred hhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC--------CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 262 KDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM--------GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 262 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
+. +. .+.+...++..|.+.++.+.|..++.+. .-.+. ..+|.-+...-.++|+.++|...++++.+..
T Consensus 412 ~~-~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 412 EA-KH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred hh-cc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC
Confidence 32 33 3345566778888888877776666655 11121 2234444444567799999999999999999
Q ss_pred CCCCchHHHHHHHHHhCCCHHHHHHHHHHH
Q 010642 333 AQESGDYVLLLNLYSSVGDWEKVKELREFM 362 (505)
Q Consensus 333 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 362 (505)
|++..+...++.+|++. +.+.|..+-+.+
T Consensus 489 ~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 489 PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 99999999999999887 577777765443
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.95 E-value=4.7e-06 Score=81.07 Aligned_cols=352 Identities=12% Similarity=0.071 Sum_probs=197.3
Q ss_pred CCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHH
Q 010642 9 SSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLF 88 (505)
Q Consensus 9 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 88 (505)
|+-++|.+..+.-....++ +.+.|..+.-.+....++++|...+..+++.+ +.|..++.-|--.-++.|+++.....-
T Consensus 55 g~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred cchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 4444554444444433222 33444444444444445555555555555444 334444444444444444444433333
Q ss_pred hcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHH------HHHHhccChHHHHHHHHHH
Q 010642 89 DEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVL------QACAHLGALEFGEKIHRYI 159 (505)
Q Consensus 89 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll------~~~~~~~~~~~a~~i~~~~ 159 (505)
....+ .....|..+..++.-.|++..|..+.+...+. ..-.|+...+.... ......|..+.|.+.+...
T Consensus 133 ~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t-~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 133 NQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKT-QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 32222 23456777778888889999999999888773 22356665554332 2334566667776666544
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC--ChhHHHH-HHHHHHhCCChHHH------------------
Q 010642 160 SEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEK--DVVSWSA-MISGLAMNGHGRDA------------------ 218 (505)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~-li~~~~~~g~~~~A------------------ 218 (505)
... +......-..-.+.+.+.+++++|..++..+..+ |...|.- +..++.+..+.-++
T Consensus 212 e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p 290 (700)
T KOG1156|consen 212 EKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECP 290 (700)
T ss_pred hhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccc
Confidence 332 2222334445667788899999999999887754 3333332 22233221112222
Q ss_pred -----------------HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhc-C------------CcC
Q 010642 219 -----------------IESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDF-G------------ILP 268 (505)
Q Consensus 219 -----------------~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~------------~~p 268 (505)
-+++..+.+.|++|- |..+.+-|-.-...+--.++.-.+.... | -+|
T Consensus 291 ~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~P 367 (700)
T KOG1156|consen 291 RRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPP 367 (700)
T ss_pred hhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCc
Confidence 223334444444432 2222222222111111111111111100 1 144
Q ss_pred Ccc--hHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHH-HHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHH
Q 010642 269 NIH--HYGCVVDLLGRAGLLDQAYQLITSM-GVKPDST-IWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLN 344 (505)
Q Consensus 269 ~~~--~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 344 (505)
+.. ++-.++..|-+.|+++.|+.+++.. +..|+.+ -|..=.+.+...|++++|..++++..+++.+|...-.-=+.
T Consensus 368 ttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAK 447 (700)
T KOG1156|consen 368 TTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAK 447 (700)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 443 3456778889999999999999988 7777755 55555577888899999999999999998665332223445
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCC
Q 010642 345 LYSSVGDWEKVKELREFMNEKGL 367 (505)
Q Consensus 345 ~~~~~g~~~~a~~~~~~m~~~~~ 367 (505)
-..++.+.++|.++.....+.|.
T Consensus 448 YmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 448 YMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHccccHHHHHHHHHhhhccc
Confidence 55688999999999999877664
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.92 E-value=3.5e-06 Score=81.60 Aligned_cols=60 Identities=10% Similarity=-0.051 Sum_probs=40.1
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHhcCC---------CCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 307 TLLGACRIHKHVTLGERVIEHLIELKAQ---------ESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 307 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
....++...|+.+.|...++.+...... ..........++...|++++|.+.+......+
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3455566777777777777776553311 12234455667789999999999998876544
No 79
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.91 E-value=1.7e-07 Score=86.36 Aligned_cols=249 Identities=11% Similarity=0.042 Sum_probs=156.2
Q ss_pred HHhCCCHHHHHHHHhc--CCC-CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHH
Q 010642 75 YSTFEKSFEACKLFDE--IPQ-RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEF 151 (505)
Q Consensus 75 ~~~~g~~~~A~~~~~~--~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~ 151 (505)
+.-.|++..++.-.+. ..+ .+.....-+.++|...|+++.++ .++.. . -.|.......+...+....+-+.
T Consensus 11 ~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~--~-~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 11 QFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKK--S-SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-T--T-SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhcc--C-CChhHHHHHHHHHHHhCccchHH
Confidence 3346777777755441 111 12334555677888888877544 34433 2 25666665555554444344444
Q ss_pred HHHHHHHHHHcCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 010642 152 GEKIHRYISEHGYG-SKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGV 230 (505)
Q Consensus 152 a~~i~~~~~~~~~~-~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 230 (505)
+..-+......... .+..+......+|...|++++|.++++.. .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-- 160 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI-- 160 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 43333332222222 34444455556778889999999988876 56667777888999999999999999999874
Q ss_pred CCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHH
Q 010642 231 FPDDQTFTGVLSACSH----CGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTI 304 (505)
Q Consensus 231 ~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 304 (505)
. +..+...+..++.. .+.+.+|..+|+++.. ...+++.+.+.+.-++...|++++|.+++.+. ...| +..+
T Consensus 161 ~-eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~ 237 (290)
T PF04733_consen 161 D-EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDT 237 (290)
T ss_dssp S-CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHH
T ss_pred C-CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHH
Confidence 3 33445555554433 3468899999999876 45567778888888888899999998888876 4444 4556
Q ss_pred HHHHHHHHHhcCch-hHHHHHHHHHHHhcCCCC
Q 010642 305 WRTLLGACRIHKHV-TLGERVIEHLIELKAQES 336 (505)
Q Consensus 305 ~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~ 336 (505)
+..++......|+. +.+.+.+.++....|..+
T Consensus 238 LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 238 LANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 77777777777777 667788888887777653
No 80
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.91 E-value=5.3e-06 Score=82.30 Aligned_cols=354 Identities=16% Similarity=0.055 Sum_probs=214.4
Q ss_pred hhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHh-CCCHHH
Q 010642 6 SMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQL-DSQLMTTLMDLYST-FEKSFE 83 (505)
Q Consensus 6 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~-~g~~~~ 83 (505)
.+.|+++.+.+.|++....-. -....|..+-..+...|.-..|..+++........| |+.++-..-..|.+ .+.+++
T Consensus 334 ~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~ee 412 (799)
T KOG4162|consen 334 SRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEE 412 (799)
T ss_pred HHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhh
Confidence 445666666666666654322 234556666666666666666666666554332222 22222222222322 233333
Q ss_pred HHHHHhcCCC--------CChhHHHHHHHHHHHC-----------CChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHH
Q 010642 84 ACKLFDEIPQ--------RDTVAWNVLISCYIRN-----------QRTRDALCLFDNLNREESGCKPDDVTCLLVLQACA 144 (505)
Q Consensus 84 A~~~~~~~~~--------~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~ 144 (505)
++..-.+... .....|-.+.-+|... ....++++.+++..+. .+-.|+..-|.+ --++
T Consensus 413 gldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~-d~~dp~~if~la--lq~A 489 (799)
T KOG4162|consen 413 GLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF-DPTDPLVIFYLA--LQYA 489 (799)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc-CCCCchHHHHHH--HHHH
Confidence 3322222211 2344455555554432 1234677777777652 223343333333 3456
Q ss_pred hccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---C--------------------hhH
Q 010642 145 HLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEK---D--------------------VVS 201 (505)
Q Consensus 145 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~---~--------------------~~~ 201 (505)
..++++.|.+...+..+.+-..++..|..|.-.+...+++.+|+.+.+..... | ..|
T Consensus 490 ~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t 569 (799)
T KOG4162|consen 490 EQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDT 569 (799)
T ss_pred HHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHH
Confidence 67788888888888888866777888888888888888888888887654311 0 111
Q ss_pred HHHHHHHHH-----------------------hCCChHHHHHHHHHHH--------HCC---------CC--CCH-----
Q 010642 202 WSAMISGLA-----------------------MNGHGRDAIESFGAMQ--------RAG---------VF--PDD----- 234 (505)
Q Consensus 202 ~~~li~~~~-----------------------~~g~~~~A~~~~~~m~--------~~g---------~~--p~~----- 234 (505)
...++...- ..++..+|.+..+++. ..| +. |+.
T Consensus 570 ~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~ 649 (799)
T KOG4162|consen 570 CIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLL 649 (799)
T ss_pred HHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHH
Confidence 111111111 0112222222222111 001 01 121
Q ss_pred -HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHH
Q 010642 235 -QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGA 311 (505)
Q Consensus 235 -~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~ 311 (505)
..|......+...+..++|...+.+..+ -.+-....|......+...|+..+|.+.|... .+.|+ +.+..++...
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ 727 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAEL 727 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 1233445566777888888877777764 22334566777777888899999999999887 77776 5588899999
Q ss_pred HHhcCchhHHHH--HHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 312 CRIHKHVTLGER--VIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 312 ~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
+...|+...|.. ++..+.+.+|.++..|..|...+.+.|+.+.|.+.|....+.
T Consensus 728 lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 728 LLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 999999998888 999999999999999999999999999999999999987654
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.90 E-value=8e-06 Score=79.06 Aligned_cols=294 Identities=10% Similarity=-0.018 Sum_probs=167.7
Q ss_pred hHHHHHHHHHccCCcHHHHHHHHHHHHhCC-CCCh-hHHHHHHHHHHhCCCHHHHHHHHhcCCC--C-ChhHHHHHHHHH
Q 010642 32 ACSFAIKCCMKFCSLMGGLQIHARVLRDGY-QLDS-QLMTTLMDLYSTFEKSFEACKLFDEIPQ--R-DTVAWNVLISCY 106 (505)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~ 106 (505)
.|..+...+...++.+.+.+.+....+... .++. .........+...|++++|.+.+++..+ | |...++. ...+
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHH
Confidence 344444555555666666665555544332 1121 1122223345667888888888776543 2 3444442 2222
Q ss_pred HH----CCChhHHHHHHHHchhccCCCCCC-HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 010642 107 IR----NQRTRDALCLFDNLNREESGCKPD-DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKC 181 (505)
Q Consensus 107 ~~----~g~~~~A~~~~~~m~~~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~ 181 (505)
.. .+....+.+.+... ....|+ ......+...+...|++++|.+.+++..+.. +.+...+..+..+|...
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLW----APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHhcccccCchhHHHHHhcc----CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 22 34455555555442 223343 3444556667788888999999998888875 55677788888888999
Q ss_pred CCHHHHHHHHhcCCCC-----Ch--hHHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHhccCCH
Q 010642 182 GSLGMAFEVFKGMPEK-----DV--VSWSAMISGLAMNGHGRDAIESFGAMQRAGV-FPDDQTF-T--GVLSACSHCGLV 250 (505)
Q Consensus 182 g~~~~A~~~~~~m~~~-----~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~-~--~ll~~~~~~g~~ 250 (505)
|++++|...+++..+. +. ..|..+...+...|++++|..+|++...... .+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 9999999988876531 21 2355677888899999999999988764322 1122211 1 223333344433
Q ss_pred HHHHHH--HHHHhhhcCCcCCcchH--HHHHHHHHhcCChHHHHHHHHHC--CCCC---CH----HHHHHHH--HHHHhc
Q 010642 251 DEGMMF--LDRMSKDFGILPNIHHY--GCVVDLLGRAGLLDQAYQLITSM--GVKP---DS----TIWRTLL--GACRIH 315 (505)
Q Consensus 251 ~~a~~~--~~~~~~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~~--~~~p---~~----~~~~~ll--~~~~~~ 315 (505)
+.+.+. +...... ..+.....+ .....++...|+.++|..+++.+ .... .. .+-..++ -++...
T Consensus 242 ~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 242 DVGDRWEDLADYAAW-HFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred ChHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 333332 1111111 111111222 24556677889999999998877 1111 11 1111222 335678
Q ss_pred CchhHHHHHHHHHHHhc
Q 010642 316 KHVTLGERVIEHLIELK 332 (505)
Q Consensus 316 g~~~~a~~~~~~~~~~~ 332 (505)
|+.+.|.+.+.......
T Consensus 321 g~~~~A~~~L~~al~~a 337 (355)
T cd05804 321 GNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999988877654
No 82
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.89 E-value=4.3e-08 Score=90.40 Aligned_cols=245 Identities=10% Similarity=0.029 Sum_probs=166.8
Q ss_pred HHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 010642 104 SCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGS 183 (505)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~ 183 (505)
+-+.-.|++..++.-.+ ... ..-..+..+...+.+++...|..+.+ ...+.+.. +|.......+...+...++
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~--~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~ 81 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKS--FSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSD 81 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHT--STCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTT
T ss_pred HHHHHhhhHHHHHHHhh-ccC--CCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccc
Confidence 44556788998887666 322 22222345566777888888887653 33443433 5666666656555544456
Q ss_pred HHHHHHHHhcCC-CC----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010642 184 LGMAFEVFKGMP-EK----DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLD 258 (505)
Q Consensus 184 ~~~A~~~~~~m~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 258 (505)
-+.+..-++... ++ +....-.....+...|++++|++++..- .+.......+..+.+.++++.|.+.++
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666665443 32 2222222234566789999999988652 356667778899999999999999999
Q ss_pred HHhhhcCCcCCcchHHHHHHHH----HhcCChHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 259 RMSKDFGILPNIHHYGCVVDLL----GRAGLLDQAYQLITSM--GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 259 ~~~~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
.|.+. ..| .+...+..++ .-.+.+.+|..+|+++ ...+++.+.+.+..+....|++++|..++++..+.+
T Consensus 156 ~~~~~---~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 156 NMQQI---DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HHHCC---SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HHHhc---CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 99753 333 3444444443 3345799999999999 555788899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhCCCH-HHHHHHHHHHHhC
Q 010642 333 AQESGDYVLLLNLYSSVGDW-EKVKELREFMNEK 365 (505)
Q Consensus 333 ~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~ 365 (505)
|.++.+...++-.....|+. +.+.+.+.++.+.
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999999999998 7788888887753
No 83
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.86 E-value=1.5e-05 Score=77.65 Aligned_cols=350 Identities=13% Similarity=0.096 Sum_probs=238.9
Q ss_pred hcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHH
Q 010642 7 MSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACK 86 (505)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 86 (505)
..+++...+.+.+..++. .+-...|.....-.+...|+-++|.......++.++ .+.+.|..+.-.+-...++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHH
Confidence 346677777777777763 222344555544456678999999998888877653 467788888888888889999999
Q ss_pred HHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCC-CHHHHHHHHHHHHhccChHHHHHHHHHHHHc
Q 010642 87 LFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKP-DDVTCLLVLQACAHLGALEFGEKIHRYISEH 162 (505)
Q Consensus 87 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 162 (505)
.|..... .|...|.-+.-.-++.++++..........+ ..| ....|.....+..-.|+...|..+.+...+.
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLq----l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQ----LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHH----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9987653 4778888888888888999988888887766 334 3456777778888889999999999988876
Q ss_pred C-CCCchhHHHHHH------HHHHhcCCHHHHHHHHhcCCCC--C-hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 010642 163 G-YGSKMNLCNSLI------AMYSKCGSLGMAFEVFKGMPEK--D-VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP 232 (505)
Q Consensus 163 ~-~~~~~~~~~~l~------~~y~~~g~~~~A~~~~~~m~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 232 (505)
. -.|+...+.... ....+.|..++|.+.+...... | ...-.+....+.+.++.++|..+|..+... .|
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nP 250 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NP 250 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cc
Confidence 5 245555554332 2346788889998888766532 2 223344567788999999999999999984 67
Q ss_pred CHHHHHHHHHHHh-ccCCHHHHH-HHHHHHhhh---------------------------------cCCcCCcchHHHHH
Q 010642 233 DDQTFTGVLSACS-HCGLVDEGM-MFLDRMSKD---------------------------------FGILPNIHHYGCVV 277 (505)
Q Consensus 233 ~~~t~~~ll~~~~-~~g~~~~a~-~~~~~~~~~---------------------------------~~~~p~~~~~~~li 277 (505)
|...|...+..+. +-.+.-++. .+|....+. .|+++ ++..+.
T Consensus 251 dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~ 327 (700)
T KOG1156|consen 251 DNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLR 327 (700)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhH
Confidence 7776655444333 222222222 344333321 13222 222233
Q ss_pred HHHHhcCChHH----HHHHHHHC-C------------CCCCHHHHHH--HHHHHHhcCchhHHHHHHHHHHHhcCCCCch
Q 010642 278 DLLGRAGLLDQ----AYQLITSM-G------------VKPDSTIWRT--LLGACRIHKHVTLGERVIEHLIELKAQESGD 338 (505)
Q Consensus 278 ~~~~~~g~~~~----A~~~~~~~-~------------~~p~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 338 (505)
..|-.-...+- +..+...+ + -.|....|.. ++..+-..|+++.|...++.++..-|.-...
T Consensus 328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEl 407 (700)
T KOG1156|consen 328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIEL 407 (700)
T ss_pred HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHH
Confidence 33322111111 11222222 1 1566666654 5577889999999999999999988888888
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 010642 339 YVLLLNLYSSVGDWEKVKELREFMNEKGL 367 (505)
Q Consensus 339 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 367 (505)
|..-.+++...|..++|...+++..+...
T Consensus 408 y~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 408 YLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 88889999999999999999998876554
No 84
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.86 E-value=8.2e-08 Score=91.82 Aligned_cols=216 Identities=10% Similarity=0.034 Sum_probs=175.9
Q ss_pred HHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHH
Q 010642 143 CAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAI 219 (505)
Q Consensus 143 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 219 (505)
+.+.|++.+|.-.|+..++.. |.+...|--|.......++-..|+..+.+..+ .|....-+|...|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 467788999999999999886 77889999999999999999999999988764 35667777888899999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-----------HHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHH
Q 010642 220 ESFGAMQRAGVFPDDQTFTGVL-----------SACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQ 288 (505)
Q Consensus 220 ~~~~~m~~~g~~p~~~t~~~ll-----------~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 288 (505)
..++.-.....+ |..+. ..+.....+....++|-.+....+..+|+..+.+|.-.|--.|.+++
T Consensus 374 ~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 998887653211 11111 12222333455566666666655666888899999999999999999
Q ss_pred HHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 289 AYQLITSM-GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 289 A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
|.+.|+.+ .++|+ ...||.|...++...+.++|+..+.+++++.|.-..+...|...|...|.+++|.+.|=....
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999998 77785 669999999999999999999999999999999999999999999999999999998876543
No 85
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.81 E-value=1e-06 Score=92.27 Aligned_cols=201 Identities=15% Similarity=0.123 Sum_probs=171.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC--------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 010642 165 GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEK--------DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQT 236 (505)
Q Consensus 165 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 236 (505)
|.....|-..|......++.++|++++++.... -...|.++++.-...|.-+...++|+++.+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 556678888899999999999999999987532 3457888888888888888889999999874 212356
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC---CHHHHHHHHHHH
Q 010642 237 FTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP---DSTIWRTLLGAC 312 (505)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~ 312 (505)
|..|...|.+.+..++|.++++.|.++++ .....|..+++.+.+.++-++|..++.++ ..-| ........+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78899999999999999999999999766 67788999999999999999999999887 2223 455566666777
Q ss_pred HhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 010642 313 RIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQT 369 (505)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 369 (505)
.+.|+.+.+..+|+..+...|.....|...+++-.+.|+.+.++.+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 899999999999999999999999999999999999999999999999999988764
No 86
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.80 E-value=7.3e-06 Score=89.78 Aligned_cols=324 Identities=13% Similarity=0.000 Sum_probs=205.1
Q ss_pred HccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC----C----C----hhHHHHHHHHHHH
Q 010642 41 MKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ----R----D----TVAWNVLISCYIR 108 (505)
Q Consensus 41 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~----~----~~~~~~li~~~~~ 108 (505)
...|+++.+...+..+.......+..........+...|++++|...++.... . + ......+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 34566666666555442111112233334445556678999998888865421 1 1 1122233455678
Q ss_pred CCChhHHHHHHHHchhccCCCCCCH----HHHHHHHHHHHhccChHHHHHHHHHHHHc----CCC-CchhHHHHHHHHHH
Q 010642 109 NQRTRDALCLFDNLNREESGCKPDD----VTCLLVLQACAHLGALEFGEKIHRYISEH----GYG-SKMNLCNSLIAMYS 179 (505)
Q Consensus 109 ~g~~~~A~~~~~~m~~~~~~~~pd~----~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----~~~-~~~~~~~~l~~~y~ 179 (505)
.|++++|...+++... ..-..+. .+.+.+...+...|+++.|...+.+.... |.. ....+...+...+.
T Consensus 465 ~g~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 465 DGDPEEAERLAELALA--ELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred CCCHHHHHHHHHHHHh--cCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 9999999999988765 2111121 23455556677899999999998887753 211 11235566777889
Q ss_pred hcCCHHHHHHHHhcCCC-------C----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHH
Q 010642 180 KCGSLGMAFEVFKGMPE-------K----DVVSWSAMISGLAMNGHGRDAIESFGAMQRA--GVFPD--DQTFTGVLSAC 244 (505)
Q Consensus 180 ~~g~~~~A~~~~~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~~~ 244 (505)
..|++++|...+++... + ....+..+...+...|++++|...+.+.... ...|. ...+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 99999999998876431 1 1223445556677789999999999887542 11122 23444556677
Q ss_pred hccCCHHHHHHHHHHHhhhcCCcCCcchH-----HHHHHHHHhcCChHHHHHHHHHCCC-C-CCH----HHHHHHHHHHH
Q 010642 245 SHCGLVDEGMMFLDRMSKDFGILPNIHHY-----GCVVDLLGRAGLLDQAYQLITSMGV-K-PDS----TIWRTLLGACR 313 (505)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~~~ll~~~~ 313 (505)
...|+.++|...+...............+ ...+..+...|+.+.|.+++..... . ... ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999998885421111111111 1122445568999999999877611 1 111 12345667788
Q ss_pred hcCchhHHHHHHHHHHHhcCC------CCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 314 IHKHVTLGERVIEHLIELKAQ------ESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
..|+.++|...++++...... ...++..+..+|.+.|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899999999999998775311 12356678889999999999999999887654
No 87
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.78 E-value=5.1e-05 Score=73.99 Aligned_cols=91 Identities=9% Similarity=0.049 Sum_probs=45.2
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHhC-CCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCC
Q 010642 33 CSFAIKCCMKFCSLMGGLQIHARVLRDG-YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQR 111 (505)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 111 (505)
|..-+.....++++...+..|+..++.- +.....+|...+......|-.+-+.+++++-.+-++..-+.-|..+++.++
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~ 184 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDR 184 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccc
Confidence 3333444445555555555555554431 122334455555544445555555555555555444445555555555555
Q ss_pred hhHHHHHHHHch
Q 010642 112 TRDALCLFDNLN 123 (505)
Q Consensus 112 ~~~A~~~~~~m~ 123 (505)
+++|-+.+....
T Consensus 185 ~~eaa~~la~vl 196 (835)
T KOG2047|consen 185 LDEAAQRLATVL 196 (835)
T ss_pred hHHHHHHHHHhc
Confidence 555555555443
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=2.1e-06 Score=75.68 Aligned_cols=286 Identities=14% Similarity=0.132 Sum_probs=149.5
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC--CChhHHHH-HHHHHHHC
Q 010642 33 CSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ--RDTVAWNV-LISCYIRN 109 (505)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~ 109 (505)
+.+++..+.+..++..+.+++..-.+.. +.+....+.|...|....++..|-..++++.. |...-|.. -...+-+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 4445555555555555555555544443 22344444455555555555555555555543 22222211 12334445
Q ss_pred CChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 010642 110 QRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFE 189 (505)
Q Consensus 110 g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~ 189 (505)
+.+..|+.+...|.. .|+...-..-+.+. .....+++..+..
T Consensus 92 ~i~ADALrV~~~~~D-----~~~L~~~~lqLqaA---------------------------------IkYse~Dl~g~rs 133 (459)
T KOG4340|consen 92 CIYADALRVAFLLLD-----NPALHSRVLQLQAA---------------------------------IKYSEGDLPGSRS 133 (459)
T ss_pred cccHHHHHHHHHhcC-----CHHHHHHHHHHHHH---------------------------------HhcccccCcchHH
Confidence 555555555555433 01111111111111 1122344444555
Q ss_pred HHhcCC-CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCc
Q 010642 190 VFKGMP-EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRA-GVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGIL 267 (505)
Q Consensus 190 ~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 267 (505)
+.++.+ +.+..+.+.......+.|++++|.+-|+...+- |.. ....|+..+.. .+.++.+.|.++..+++++ |++
T Consensus 134 LveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniALaH-y~~~qyasALk~iSEIieR-G~r 210 (459)
T KOG4340|consen 134 LVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLALAH-YSSRQYASALKHISEIIER-GIR 210 (459)
T ss_pred HHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHHHH-HhhhhHHHHHHHHHHHHHh-hhh
Confidence 555444 233333333344444555555555555555443 222 23344443322 2335555555555555443 322
Q ss_pred C-------------C--------cchHHHHHH-------HHHhcCChHHHHHHHHHCC----CCCCHHHHHHHHHHHHhc
Q 010642 268 P-------------N--------IHHYGCVVD-------LLGRAGLLDQAYQLITSMG----VKPDSTIWRTLLGACRIH 315 (505)
Q Consensus 268 p-------------~--------~~~~~~li~-------~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~ll~~~~~~ 315 (505)
. | .-+-+.++. .+.+.|+++.|.+.+..|+ ...|++|...+.-. -..
T Consensus 211 ~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~ 289 (459)
T KOG4340|consen 211 QHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMD 289 (459)
T ss_pred cCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-ccc
Confidence 1 1 112233333 3567899999999999992 23467777655422 234
Q ss_pred CchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHH
Q 010642 316 KHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREF 361 (505)
Q Consensus 316 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 361 (505)
+++..+.+-+.-+++..|-.+.+|..++-.|++..-++-|..++-+
T Consensus 290 ~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 290 ARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 6677777788888888988889999999999999999999888754
No 89
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.6e-05 Score=73.33 Aligned_cols=261 Identities=10% Similarity=0.025 Sum_probs=171.2
Q ss_pred CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHH-HHHHHHhccChHHHHHHHHHHHHcCCCCchhHHH
Q 010642 94 RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLL-VLQACAHLGALEFGEKIHRYISEHGYGSKMNLCN 172 (505)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~-ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 172 (505)
.|+.....+...+...|+.++|+..|++.+. +.|+..+-.- -.-.+.+.|+++....+...+.... ..+..-|-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~----~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLC----ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhh----CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence 3666777778888888888888888887754 4454332111 1122355667776666666555432 11222233
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 010642 173 SLIAMYSKCGSLGMAFEVFKGMPEK---DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP-DDQTFTGVLSACSHCG 248 (505)
Q Consensus 173 ~l~~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g 248 (505)
.-........++..|..+-++..+- ++..+-.-...+.+.|++++|.-.|+..+. +.| +...|..|+.+|...|
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhc
Confidence 3333344566777777777766543 344444444677788888888888888776 343 4578888888888888
Q ss_pred CHHHHHHHHHHHhhhcCCcCCcchHHHHH-HHHH-hcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchhHHHHH
Q 010642 249 LVDEGMMFLDRMSKDFGILPNIHHYGCVV-DLLG-RAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHVTLGERV 324 (505)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 324 (505)
.+.+|.-.-+...+ -++.+..+.+.+. ..+. ...--++|.+++++. .++|+ ....+.+...|...|..+.++.+
T Consensus 383 ~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 383 RFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred hHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 88888877766665 3334455544442 2222 223346788888876 66776 33566677778888888899999
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 325 IEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
+++.+...|+. ...+.|.+.+...+.+.+|...|....+
T Consensus 461 Le~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 461 LEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 98888877764 6778888888888888888888876544
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.74 E-value=2.3e-05 Score=70.61 Aligned_cols=57 Identities=9% Similarity=0.015 Sum_probs=33.7
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 308 LLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 308 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
+-.++...+++.+|++...++++.+|++..++.--..+|.-...+++|+.-|+...+
T Consensus 313 ~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 313 LCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred eeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 334455556666666666666666666666666666666666666666665555544
No 91
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.74 E-value=0.0001 Score=73.54 Aligned_cols=307 Identities=13% Similarity=0.113 Sum_probs=178.4
Q ss_pred hCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHH
Q 010642 59 DGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVT 135 (505)
Q Consensus 59 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t 135 (505)
..+..|..+|..|.-+...+|+++.+.+.|++... .....|+.+...|...|....|+.+++.-... ...++|...
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~-~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKK-SEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccc-ccCCCcchH
Confidence 34567888999999999999999999999988764 35677999999999999999999999877551 112333343
Q ss_pred HHHHHHHHH-hccChHHHHHHHHHHHH--------------------------------------------------cCC
Q 010642 136 CLLVLQACA-HLGALEFGEKIHRYISE--------------------------------------------------HGY 164 (505)
Q Consensus 136 ~~~ll~~~~-~~~~~~~a~~i~~~~~~--------------------------------------------------~~~ 164 (505)
+...-..|. +.+..+++..+-.+++. .+
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d- 474 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD- 474 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-
Confidence 333333332 23444444444333333 22
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHC-CCC--------
Q 010642 165 GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP----EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRA-GVF-------- 231 (505)
Q Consensus 165 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~-------- 231 (505)
+.|+.+..-+.--|+..++++.|.+...+.. ..+...|..+.-.+...+++.+|+.+.+..... |..
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKI 554 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhh
Confidence 2222222223334455555555555544332 335566666666666666677776666655432 110
Q ss_pred ----------CCHHHHHHHHHHHh------cc-----------------CCHHHHHHHHHHH----hh---h--------
Q 010642 232 ----------PDDQTFTGVLSACS------HC-----------------GLVDEGMMFLDRM----SK---D-------- 263 (505)
Q Consensus 232 ----------p~~~t~~~ll~~~~------~~-----------------g~~~~a~~~~~~~----~~---~-------- 263 (505)
--..|...++..+- .. ++..++......+ .. .
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 00011111111111 00 0000010000000 00 0
Q ss_pred -cCCcCCc--------chHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 264 -FGILPNI--------HHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 264 -~~~~p~~--------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
....|+. ..|....+.+.+.+..++|.-.+.+. ++.| ....|......+...|+.++|.+.|......+
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 0111111 12334455666777777776666555 4444 34456666666778889999999999999999
Q ss_pred CCCCchHHHHHHHHHhCCCHHHHHH--HHHHHHhCCC
Q 010642 333 AQESGDYVLLLNLYSSVGDWEKVKE--LREFMNEKGL 367 (505)
Q Consensus 333 ~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~~~ 367 (505)
|+++....++..++.+.|+-..|.. ++..+.+.+.
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 9999999999999999998877777 7777776553
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=1.1e-05 Score=71.11 Aligned_cols=346 Identities=12% Similarity=0.051 Sum_probs=185.3
Q ss_pred hhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHH-HHHHHHhC------
Q 010642 6 SMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTT-LMDLYSTF------ 78 (505)
Q Consensus 6 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~------ 78 (505)
.+..++.+|++++..-.+...+ +...++.+..+|-...++..|-..++++-..- |...-|.. -...+.+.
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHHHhcccHHH
Confidence 4556677788887777665422 66667777777777777777777777664332 21111110 00111233
Q ss_pred ----------------------------CCHHHHHHHHhcCC-CCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCC
Q 010642 79 ----------------------------EKSFEACKLFDEIP-QRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGC 129 (505)
Q Consensus 79 ----------------------------g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 129 (505)
+++..+..+.++.+ +.+..+.+.......+.|+++.|++-|+...+. .|.
T Consensus 98 LrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv-sGy 176 (459)
T KOG4340|consen 98 LRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQV-SGY 176 (459)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhh-cCC
Confidence 34444444444444 244555555566667788888888888888763 444
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchh----------------------------HHHHHHHHHHhc
Q 010642 130 KPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMN----------------------------LCNSLIAMYSKC 181 (505)
Q Consensus 130 ~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~----------------------------~~~~l~~~y~~~ 181 (505)
.| ...|+..+.. -+.++++.|.+...++++.|+...+. .+|.-...+.+.
T Consensus 177 qp-llAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~ 254 (459)
T KOG4340|consen 177 QP-LLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQL 254 (459)
T ss_pred Cc-hhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhc
Confidence 44 4566655544 46678888888888888776432211 122233345678
Q ss_pred CCHHHHHHHHhcCCCC-----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010642 182 GSLGMAFEVFKGMPEK-----DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMF 256 (505)
Q Consensus 182 g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 256 (505)
|+++.|.+.+-.|+.+ |++|...+.-.= ..+++.+..+-+.-+.+.+. ....||..++-.|++..-++.|-.+
T Consensus 255 ~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADv 332 (459)
T KOG4340|consen 255 RNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADV 332 (459)
T ss_pred ccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHH
Confidence 8888888888888743 666655443222 23445444444444444433 2346888888888888888888777
Q ss_pred HHHHhhhcCCc-CCcchHHHHHHHHH-hcCChHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCch---hHHHHHHHHHH
Q 010642 257 LDRMSKDFGIL-PNIHHYGCVVDLLG-RAGLLDQAYQLITSMGVKPD--STIWRTLLGACRIHKHV---TLGERVIEHLI 329 (505)
Q Consensus 257 ~~~~~~~~~~~-p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~---~~a~~~~~~~~ 329 (505)
+.+-... ... .+...|+ |++++. -.-..++|++-++.+.-... ......-+.--...++- ..+.+-++..+
T Consensus 333 LAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~L 410 (459)
T KOG4340|consen 333 LAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETL 410 (459)
T ss_pred HhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 6654321 111 1222232 333333 23455666555554410000 00000111111111111 11222222222
Q ss_pred HhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 330 ELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 330 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
++.- .+...-...|.+..++..++++|..-.+
T Consensus 411 E~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 411 EKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 2221 1233445567788889999999876554
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=3.4e-05 Score=73.74 Aligned_cols=100 Identities=14% Similarity=-0.041 Sum_probs=75.5
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHH
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEA 84 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 84 (505)
....|+++.|+.+|.+.+...+. |...|+.-..+++..|++++|.+=-.+.++.. +.=..-|+-+..+..-.|++++|
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHHHH
Confidence 45689999999999999887644 77888888999999999999988777776654 22356778888888888999999
Q ss_pred HHHHhcCCCC---ChhHHHHHHHHH
Q 010642 85 CKLFDEIPQR---DTVAWNVLISCY 106 (505)
Q Consensus 85 ~~~~~~~~~~---~~~~~~~li~~~ 106 (505)
+..|.+-.+. |...++-+..++
T Consensus 90 ~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 90 ILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHhhcCCchHHHHHhHHHhh
Confidence 9999875542 344444444444
No 94
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.69 E-value=3.7e-05 Score=74.88 Aligned_cols=325 Identities=11% Similarity=0.161 Sum_probs=188.2
Q ss_pred hhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC----------------------HHHHHHHH
Q 010642 31 FACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEK----------------------SFEACKLF 88 (505)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------------------~~~A~~~~ 88 (505)
..|.+|.+-|.+.|.++.|..++++.+..- .+..-++.+.+.|+.... ++-....|
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 468888888999999999999998887652 344445555555544321 22223333
Q ss_pred hcCCC---------------CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC------HHHHHHHHHHHHhcc
Q 010642 89 DEIPQ---------------RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD------DVTCLLVLQACAHLG 147 (505)
Q Consensus 89 ~~~~~---------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd------~~t~~~ll~~~~~~~ 147 (505)
+.+.+ .++..|..-+. ...|+..+-...|.+..+ .+.|- ...|..+.+.|-..|
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~---~vdP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVK---TVDPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHH---ccCcccCCCChhhHHHHHHHHHHhcC
Confidence 33322 12333433332 235667777777777766 34443 234677788888899
Q ss_pred ChHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhcCC---C------------------CChhHHH
Q 010642 148 ALEFGEKIHRYISEHGYGSK---MNLCNSLIAMYSKCGSLGMAFEVFKGMP---E------------------KDVVSWS 203 (505)
Q Consensus 148 ~~~~a~~i~~~~~~~~~~~~---~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~------------------~~~~~~~ 203 (505)
+++.|..+|++..+..++.- ..+|..-..+=.+..+++.|.++.+... . ++...|.
T Consensus 402 ~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs 481 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWS 481 (835)
T ss_pred cHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHH
Confidence 99999999999888755432 4566667777778888888888887653 1 1233555
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCC----------------------------------CCHH-HHHHHHHHH---h
Q 010642 204 AMISGLAMNGHGRDAIESFGAMQRAGVF----------------------------------PDDQ-TFTGVLSAC---S 245 (505)
Q Consensus 204 ~li~~~~~~g~~~~A~~~~~~m~~~g~~----------------------------------p~~~-t~~~ll~~~---~ 245 (505)
..+..--..|-++....+|+.+.+..+. |+.. .|+..+.-+ .
T Consensus 482 ~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ry 561 (835)
T KOG2047|consen 482 MYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRY 561 (835)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHh
Confidence 5555555556666666666666553322 2221 122222211 1
Q ss_pred ccCCHHHHHHHHHHHhhhcCCcCCcch--HHHHHHHHHhcCChHHHHHHHHHC--CCCCC--HHHHHHHHHHHHhcCchh
Q 010642 246 HCGLVDEGMMFLDRMSKDFGILPNIHH--YGCVVDLLGRAGLLDQAYQLITSM--GVKPD--STIWRTLLGACRIHKHVT 319 (505)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~~~ 319 (505)
..-.++.|..+|++..+ +.+|...- |-.....=-+-|....|+.++++. ++++. ...|+..|.-....=-+.
T Consensus 562 gg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~ 639 (835)
T KOG2047|consen 562 GGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVP 639 (835)
T ss_pred cCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCc
Confidence 23356677777777765 55553221 111112222346666677777766 43332 235666654433333345
Q ss_pred HHHHHHHHHHHhcCCCCc--hHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 320 LGERVIEHLIELKAQESG--DYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
....++++.++.-|++.. .-.-...+=.+.|..+.|..++..-.+
T Consensus 640 ~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 640 RTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred ccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 556677777766554322 122345566788999999999876544
No 95
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.68 E-value=4.4e-05 Score=83.70 Aligned_cols=327 Identities=11% Similarity=-0.038 Sum_probs=205.9
Q ss_pred hcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCC------CC--hhHHHHHHHHHHhC
Q 010642 7 MSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQ------LD--SQLMTTLMDLYSTF 78 (505)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~--~~~~~~li~~~~~~ 78 (505)
..|+++.+..+++.+.......+..........+...|+++++...+..+...--. +. ......+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 34566666666655422111112222233344556778999999988877543111 11 12222333456678
Q ss_pred CCHHHHHHHHhcCCC----CC----hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCC-CC--CHHHHHHHHHHHHhcc
Q 010642 79 EKSFEACKLFDEIPQ----RD----TVAWNVLISCYIRNQRTRDALCLFDNLNREESGC-KP--DDVTCLLVLQACAHLG 147 (505)
Q Consensus 79 g~~~~A~~~~~~~~~----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~p--d~~t~~~ll~~~~~~~ 147 (505)
|++++|...+++... .+ ..+++.+...+...|++++|...+++........ .+ ...++..+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 999999998877532 22 2345667778889999999999998876410111 11 1234555667788899
Q ss_pred ChHHHHHHHHHHHHc----CCC---CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC------C--ChhHHHHHHHHHHhC
Q 010642 148 ALEFGEKIHRYISEH----GYG---SKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE------K--DVVSWSAMISGLAMN 212 (505)
Q Consensus 148 ~~~~a~~i~~~~~~~----~~~---~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~------~--~~~~~~~li~~~~~~ 212 (505)
+++.|...+++.... +.. .....+..+...+...|++++|...+.+... + ....+..+...+...
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 999999998877653 221 1233455667778888999999998887632 1 123444566678889
Q ss_pred CChHHHHHHHHHHHHCC--CCCCHH--H-H-HHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcch----HHHHHHHHHh
Q 010642 213 GHGRDAIESFGAMQRAG--VFPDDQ--T-F-TGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHH----YGCVVDLLGR 282 (505)
Q Consensus 213 g~~~~A~~~~~~m~~~g--~~p~~~--t-~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~----~~~li~~~~~ 282 (505)
|++++|...+.+..... ..+... . . ...+..+...|+.+.|.+.+...... .. ..... +..+..++..
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~-~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EF-ANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CC-ccchhHHHHHHHHHHHHHH
Confidence 99999999998875421 111110 1 0 11223445588999999988776531 11 11111 3456677889
Q ss_pred cCChHHHHHHHHHC-------CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 010642 283 AGLLDQAYQLITSM-------GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQE 335 (505)
Q Consensus 283 ~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 335 (505)
.|+.++|...+++. +..++ ..+...+..++...|+.+.|...+.+..+...+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 99999999988876 32222 2355566678889999999999999999887443
No 96
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.65 E-value=2e-06 Score=84.68 Aligned_cols=226 Identities=12% Similarity=0.059 Sum_probs=176.9
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010642 164 YGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSA 243 (505)
Q Consensus 164 ~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 243 (505)
++|-......+...+...|-...|..+|++. ..|...|.+|...|+..+|..+..+-.+ -+||..-|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 4666667788999999999999999999976 4788889999999999999999888777 57899999999998
Q ss_pred HhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHH
Q 010642 244 CSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLG 321 (505)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 321 (505)
.....-+++|+++.+....+ .-..+.....+.++++++.+.|+.- .+.| ...+|-.+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 88888899999998876542 1122222334578999999999876 5555 467898888889999999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEecCCCCcchHHHHHH
Q 010642 322 ERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQM 401 (505)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (505)
.+.|.....++|++...|+.+..+|.+.|+..+|...+++..+-+..+ |-.+.+..+.- ..-+..+++.+.
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~-----w~iWENymlvs----vdvge~eda~~A 609 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH-----WQIWENYMLVS----VDVGEFEDAIKA 609 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC-----Ceeeechhhhh----hhcccHHHHHHH
Confidence 999999999999999999999999999999999999999998877543 44444432221 133566666666
Q ss_pred HHHHHHHHHHcCc
Q 010642 402 LDEINKQLKIAGY 414 (505)
Q Consensus 402 l~~l~~~m~~~g~ 414 (505)
..++.. |++.+-
T Consensus 610 ~~rll~-~~~~~~ 621 (777)
T KOG1128|consen 610 YHRLLD-LRKKYK 621 (777)
T ss_pred HHHHHH-hhhhcc
Confidence 666543 344433
No 97
>PF12854 PPR_1: PPR repeat
Probab=98.63 E-value=5.7e-08 Score=57.31 Aligned_cols=33 Identities=36% Similarity=0.570 Sum_probs=24.7
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 010642 163 GYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP 195 (505)
Q Consensus 163 ~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 195 (505)
|++||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777777777777777777777777763
No 98
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.61 E-value=4.8e-06 Score=75.38 Aligned_cols=182 Identities=9% Similarity=-0.007 Sum_probs=117.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-Ch---hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--HHH
Q 010642 166 SKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE--K-DV---VSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDD--QTF 237 (505)
Q Consensus 166 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~ 237 (505)
.....+..+...|.+.|++++|...|+++.+ | +. .++..+..+|.+.|++++|+..|+++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3455667777778888888888888876653 2 21 35666777788888888888888888764322111 134
Q ss_pred HHHHHHHhcc--------CCHHHHHHHHHHHhhhcCCcCCc-chHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHH
Q 010642 238 TGVLSACSHC--------GLVDEGMMFLDRMSKDFGILPNI-HHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTL 308 (505)
Q Consensus 238 ~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 308 (505)
..+..++.+. |+.++|.+.++.+... .|+. ..+..+.... . .... . ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~-~---~~~~---~--------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD-Y---LRNR---L--------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH-H---HHHH---H--------HHHHHHH
Confidence 4444445443 6677777777777653 2332 1222111110 0 0000 0 0011244
Q ss_pred HHHHHhcCchhHHHHHHHHHHHhcCCC---CchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 309 LGACRIHKHVTLGERVIEHLIELKAQE---SGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 309 l~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
...+...|+++.|...++.+.+..|.+ +..+..++.+|...|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566788999999999999999887654 368889999999999999999999888654
No 99
>PF12854 PPR_1: PPR repeat
Probab=98.60 E-value=7.2e-08 Score=56.86 Aligned_cols=33 Identities=36% Similarity=0.463 Sum_probs=24.1
Q ss_pred CCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCC
Q 010642 60 GYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIP 92 (505)
Q Consensus 60 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 92 (505)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777777777777777777777777763
No 100
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=1.7e-05 Score=71.69 Aligned_cols=344 Identities=11% Similarity=0.060 Sum_probs=206.5
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHH
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEA 84 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 84 (505)
+..+.++..|+.+++--...+-.-...+-.-+..++...|++++|...+..+.... .++..++-.|...+.-.|.+.+|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence 45567888888888877654433222233334456668899999999998887654 55666777777667778889999
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCC
Q 010642 85 CKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGY 164 (505)
Q Consensus 85 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~ 164 (505)
..+-...++ ++..-..|...-.+.++-++-+.+-+.+.. .. .--.++.+..-....+.+|..++..+...+
T Consensus 111 ~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD----~~---EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn- 181 (557)
T KOG3785|consen 111 KSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQD----TL---EDQLSLASVHYMRMHYQEAIDVYKRVLQDN- 181 (557)
T ss_pred HHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh----hH---HHHHhHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 988877654 334445566666777777777766666644 11 222344444445567899999999888753
Q ss_pred CCchhHHHH-HHHHHHhcCCHHHHHHHHhcC----CC-------------------------------------------
Q 010642 165 GSKMNLCNS-LIAMYSKCGSLGMAFEVFKGM----PE------------------------------------------- 196 (505)
Q Consensus 165 ~~~~~~~~~-l~~~y~~~g~~~~A~~~~~~m----~~------------------------------------------- 196 (505)
|+-...|. +.-.|.|..-++-+.++++.- +.
T Consensus 182 -~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 182 -PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC 260 (557)
T ss_pred -hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence 33222222 223444544444444433211 10
Q ss_pred -CC---------------------hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HhccCC
Q 010642 197 -KD---------------------VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSA-----CSHCGL 249 (505)
Q Consensus 197 -~~---------------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-----~~~~g~ 249 (505)
.| +.+--.++--|.+.++..+|..+.+++.- ..|-......+..+ .....-
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHH
Confidence 00 01112233446667777777777665421 22333322222221 111222
Q ss_pred HHHHHHHHHHHhhhcCCcCCc-chHHHHHHHHHhcCChHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHH
Q 010642 250 VDEGMMFLDRMSKDFGILPNI-HHYGCVVDLLGRAGLLDQAYQLITSM--GVKPDSTIWRTLLGACRIHKHVTLGERVIE 326 (505)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 326 (505)
+.-|.+.|+..-+. +..-|. .--.++...+.-..++++.+-+++.+ =+..|..---.+..+....|++.+|+++|-
T Consensus 339 lKiAqqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHh
Confidence 44566666655443 444332 23345666666677888888888777 122233323346788889999999999998
Q ss_pred HHHHhcCCCCchHH-HHHHHHHhCCCHHHHHHHHHHH
Q 010642 327 HLIELKAQESGDYV-LLLNLYSSVGDWEKVKELREFM 362 (505)
Q Consensus 327 ~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m 362 (505)
++...+..+..+|. .|.+.|.+.++.+.|+.++-++
T Consensus 418 ~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 418 RISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred hhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 88777755666776 5678889999999998876544
No 101
>PLN02789 farnesyltranstransferase
Probab=98.59 E-value=1.5e-05 Score=74.62 Aligned_cols=228 Identities=13% Similarity=0.104 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHH-HHHHHHHHHHhcc-ChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 010642 98 AWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDV-TCLLVLQACAHLG-ALEFGEKIHRYISEHGYGSKMNLCNSLI 175 (505)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~-t~~~ll~~~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~l~ 175 (505)
++..+-..+...++.++|+.+..++.. +.|+.. +|+.-..++...+ +++++...++.+.+.. +.+..+|+...
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~----lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~ 113 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIR----LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRR 113 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH----HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHH
Confidence 344444555556666666666666655 334332 2333333333444 3455555555555543 33444444443
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010642 176 AMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMM 255 (505)
Q Consensus 176 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 255 (505)
.++.+.|+. ..++++.+++++.+...+ |...|.....++...|+++++++
T Consensus 114 ~~l~~l~~~-----------------------------~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~ 163 (320)
T PLN02789 114 WLAEKLGPD-----------------------------AANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELE 163 (320)
T ss_pred HHHHHcCch-----------------------------hhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444431 013344444444433221 33344444444444444444444
Q ss_pred HHHHHhhhcCCcCCcchHHHHHHHHHhc---CC----hHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhc----CchhHHH
Q 010642 256 FLDRMSKDFGILPNIHHYGCVVDLLGRA---GL----LDQAYQLITSM-GVKP-DSTIWRTLLGACRIH----KHVTLGE 322 (505)
Q Consensus 256 ~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~----g~~~~a~ 322 (505)
.++++++. .+-+...|+...-.+.+. |. .+++.++..++ ...| |...|+.+...+... ++..+|.
T Consensus 164 ~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~ 241 (320)
T PLN02789 164 YCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVS 241 (320)
T ss_pred HHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHH
Confidence 44444432 112223333322222222 11 13444444333 3344 345666666666552 3345577
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHhCC------------------CHHHHHHHHHHH
Q 010642 323 RVIEHLIELKAQESGDYVLLLNLYSSVG------------------DWEKVKELREFM 362 (505)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m 362 (505)
..+.++.+.+|.++.....|++.|+... ..++|.++++.+
T Consensus 242 ~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 242 SVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred HHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 7777766666777677777777776532 236677777777
No 102
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.59 E-value=2.5e-05 Score=76.98 Aligned_cols=188 Identities=14% Similarity=0.210 Sum_probs=88.1
Q ss_pred HHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHH
Q 010642 143 CAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESF 222 (505)
Q Consensus 143 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 222 (505)
......+.+|..+++.+.... ...-.|..+.+-|+..|+++.|+++|-+.- .++-.|..|.+.|++++|.++-
T Consensus 742 ai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHH
Confidence 334445555555555444432 112234445555666666666666655432 2334455555666666665554
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCC-
Q 010642 223 GAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPD- 301 (505)
Q Consensus 223 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~- 301 (505)
.+.. |.......|..-..-.-+.|++.+|.++|-.+.. |+ .-|.+|-+.|..++.+++.++- .|+
T Consensus 815 ~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~-----p~-----~aiqmydk~~~~ddmirlv~k~--h~d~ 880 (1636)
T KOG3616|consen 815 EECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE-----PD-----KAIQMYDKHGLDDDMIRLVEKH--HGDH 880 (1636)
T ss_pred HHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC-----ch-----HHHHHHHhhCcchHHHHHHHHh--Chhh
Confidence 4332 2232333444444444555555555555443321 22 2345555555555555555554 111
Q ss_pred -HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHH
Q 010642 302 -STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELR 359 (505)
Q Consensus 302 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 359 (505)
..|-..+..-+-..|+...|+..|-+. .-|.+-+++|-..+.|++|.++-
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHH
Confidence 223333444444555555555444332 22344445555555555554443
No 103
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.59 E-value=2.3e-05 Score=82.52 Aligned_cols=238 Identities=12% Similarity=0.128 Sum_probs=184.2
Q ss_pred chHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhC-CC---CChhHHHHHHHHHHhCCCHHHHHH
Q 010642 11 PEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG-YQ---LDSQLMTTLMDLYSTFEKSFEACK 86 (505)
Q Consensus 11 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~---~~~~~~~~li~~~~~~g~~~~A~~ 86 (505)
++.|.++ ++..... +-+...|-.-+.-..+.++.+.|+.+.+++++.= +. --..+|.+++++-...|.-+...+
T Consensus 1441 pesaeDf-erlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1441 PESAEDF-ERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred CcCHHHH-HHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence 3344444 4443332 2344578888888889999999999999987642 21 123588899988888898899999
Q ss_pred HHhcCCCC--ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCC
Q 010642 87 LFDEIPQR--DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGY 164 (505)
Q Consensus 87 ~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~ 164 (505)
+|++..+- .-..|..|...|.+.+.+++|.++|+.|.++ +.-....|...+..+.+..+-+.|..++.++++.-
T Consensus 1519 VFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK---F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l- 1594 (1710)
T KOG1070|consen 1519 VFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK---FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL- 1594 (1710)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH---hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-
Confidence 99998762 3456889999999999999999999999883 44556788888999999999999999999988862
Q ss_pred CC--chhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--HHH
Q 010642 165 GS--KMNLCNSLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDD--QTF 237 (505)
Q Consensus 165 ~~--~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~ 237 (505)
|. ........+.+-.++|+.+.++.+|+.... +-...|+..|..-.++|+.+.+..+|++....++.|-. +.|
T Consensus 1595 Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfff 1674 (1710)
T KOG1070|consen 1595 PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFF 1674 (1710)
T ss_pred chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHH
Confidence 33 456667778888999999999999998763 34568999999999999999999999999998887765 456
Q ss_pred HHHHHHHhccCCHHHHH
Q 010642 238 TGVLSACSHCGLVDEGM 254 (505)
Q Consensus 238 ~~ll~~~~~~g~~~~a~ 254 (505)
.-.+..=.+.|+-+.++
T Consensus 1675 KkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1675 KKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred HHHHHHHHhcCchhhHH
Confidence 66666555556644433
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=5.5e-06 Score=79.67 Aligned_cols=248 Identities=10% Similarity=0.047 Sum_probs=182.3
Q ss_pred HHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 010642 104 SCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGS 183 (505)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~ 183 (505)
.-+.++|+..+|.-.|+...+ .-|-+...|..|....+..++-..|...+.+.++.. |.+..+.-+|.-.|...|.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVk---qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVK---QDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHh---hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhh
Confidence 346788999999999988877 234456788888888888888889999999999875 6678888899999999999
Q ss_pred HHHHHHHHhcCCCCC-hhHHHHHH---------HHHHhCCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhccCCHHH
Q 010642 184 LGMAFEVFKGMPEKD-VVSWSAMI---------SGLAMNGHGRDAIESFGAMQ-RAGVFPDDQTFTGVLSACSHCGLVDE 252 (505)
Q Consensus 184 ~~~A~~~~~~m~~~~-~~~~~~li---------~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~~~~~~g~~~~ 252 (505)
-..|...++.-.... ...|.... ..+..........++|-++. +.+.++|......|.-.|--.|++++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999887653110 00000000 11122223345566666665 44544666666777777888899999
Q ss_pred HHHHHHHHhhhcCCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 010642 253 GMMFLDRMSKDFGILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLI 329 (505)
Q Consensus 253 a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 329 (505)
|...|+.... ++| |...||.|.-.++...+.++|...|++. .++|+ +.++..|.-+|...|.+++|...|-.++
T Consensus 449 aiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999999985 455 5778999999999999999999999998 88897 4477788889999999999999999887
Q ss_pred HhcCCC----------CchHHHHHHHHHhCCCHHHHHHH
Q 010642 330 ELKAQE----------SGDYVLLLNLYSSVGDWEKVKEL 358 (505)
Q Consensus 330 ~~~~~~----------~~~~~~l~~~~~~~g~~~~a~~~ 358 (505)
.+.+.+ ...|..|=.++.-.++.|.+.++
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 765331 13566665666666666644443
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.54 E-value=9.8e-06 Score=70.59 Aligned_cols=147 Identities=10% Similarity=0.082 Sum_probs=106.4
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCCh
Q 010642 207 SGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLL 286 (505)
Q Consensus 207 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 286 (505)
..|...|+++.+....+.+.. |. ..+...++.+++...++...+ .-+.+...|..+...|...|++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCH
Confidence 457777777665444322211 11 022235666777777777765 3455677888888888899999
Q ss_pred HHHHHHHHHC-CCCC-CHHHHHHHHHHH-HhcCc--hhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHH
Q 010642 287 DQAYQLITSM-GVKP-DSTIWRTLLGAC-RIHKH--VTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREF 361 (505)
Q Consensus 287 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 361 (505)
++|...|++. .+.| +...+..+..++ ...|+ .++|.++++++.+.+|.++.++..+...+.+.|++++|...|++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999988888 5556 455666666653 56666 58999999999999999989999999999999999999999999
Q ss_pred HHhCCC
Q 010642 362 MNEKGL 367 (505)
Q Consensus 362 m~~~~~ 367 (505)
+.+..-
T Consensus 170 aL~l~~ 175 (198)
T PRK10370 170 VLDLNS 175 (198)
T ss_pred HHhhCC
Confidence 876543
No 106
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.00068 Score=65.84 Aligned_cols=121 Identities=17% Similarity=0.105 Sum_probs=88.1
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHH----HHHHHHCC
Q 010642 35 FAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVL----ISCYIRNQ 110 (505)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l----i~~~~~~g 110 (505)
+=++-+...+++++|.+...+++..+ +.|...+..-+-+..+.+.+++|.++.+.-... .+++.. .-+..+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence 33555677889999999999998876 556666776777788999999999777654431 122222 33445789
Q ss_pred ChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCC
Q 010642 111 RTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGY 164 (505)
Q Consensus 111 ~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~ 164 (505)
..++|+..++-... -|..+...-...|-+.+++++|..+|+.+.+.+.
T Consensus 94 k~Dealk~~~~~~~------~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 94 KLDEALKTLKGLDR------LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred cHHHHHHHHhcccc------cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 99999999884422 2334666667778899999999999999987653
No 107
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.51 E-value=0.00041 Score=62.84 Aligned_cols=196 Identities=12% Similarity=0.098 Sum_probs=142.8
Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc---CCCCChhHHHHHHHHHHhCC
Q 010642 137 LLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKG---MPEKDVVSWSAMISGLAMNG 213 (505)
Q Consensus 137 ~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~---m~~~~~~~~~~li~~~~~~g 213 (505)
...+..+...|+...+......+++.. +-|...+..-..+|...|++..|+.=++. +...+..++--+-..+...|
T Consensus 159 ~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vg 237 (504)
T KOG0624|consen 159 VQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVG 237 (504)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhh
Confidence 344555567788888888888888864 66888888888999999999988876654 34566677777777888889
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHH----H---HHH------HHhccCCHHHHHHHHHHHhhhcCCcCC-----cchHHH
Q 010642 214 HGRDAIESFGAMQRAGVFPDDQTFT----G---VLS------ACSHCGLVDEGMMFLDRMSKDFGILPN-----IHHYGC 275 (505)
Q Consensus 214 ~~~~A~~~~~~m~~~g~~p~~~t~~----~---ll~------~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~ 275 (505)
+.+.++...++-.+ +.||..... . +.. .....+.+.++..-.+...+. .|. ...+..
T Consensus 238 d~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~ 312 (504)
T KOG0624|consen 238 DAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRV 312 (504)
T ss_pred hHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeehe
Confidence 99988888888776 566653221 1 111 123456666666666666543 333 234455
Q ss_pred HHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCch
Q 010642 276 VVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGD 338 (505)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 338 (505)
+-.++...|++-+|++.-.+. .+.|| +.++---..+|.....++.|+.-++.+.+.++.+..+
T Consensus 313 ~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 313 LCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred eeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 667778889999999988887 77776 6677777788888899999999999999999887543
No 108
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=3.7e-05 Score=73.52 Aligned_cols=323 Identities=11% Similarity=0.029 Sum_probs=194.0
Q ss_pred HHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC--CC-hhHHHHHHHHHHHCCChhH
Q 010642 38 KCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ--RD-TVAWNVLISCYIRNQRTRD 114 (505)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~ 114 (505)
.+....|+++.|...|...+... ++|.+.|..-...|++.|++++|.+=-.+..+ |+ ...|+-+..++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 45567899999999999999887 45999999999999999999998876655543 33 4579999999999999999
Q ss_pred HHHHHHHchhccCCCCC-CHHHHHHHHHHHHhc---cC------------------------------------------
Q 010642 115 ALCLFDNLNREESGCKP-DDVTCLLVLQACAHL---GA------------------------------------------ 148 (505)
Q Consensus 115 A~~~~~~m~~~~~~~~p-d~~t~~~ll~~~~~~---~~------------------------------------------ 148 (505)
|+..|.+-.+ ..| |...++-+..+.... ++
T Consensus 89 A~~ay~~GL~----~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 89 AILAYSEGLE----KDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHhh----cCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 9999998765 333 344444454444111 00
Q ss_pred ---hHHHHHHHHHHHHc--------C-------CCC------------c----------hhHHHHHHHHHHhcCCHHHHH
Q 010642 149 ---LEFGEKIHRYISEH--------G-------YGS------------K----------MNLCNSLIAMYSKCGSLGMAF 188 (505)
Q Consensus 149 ---~~~a~~i~~~~~~~--------~-------~~~------------~----------~~~~~~l~~~y~~~g~~~~A~ 188 (505)
.+...+.+..+... + ..| | ..-...+.++..+..+++.|.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 00000010000000 0 000 0 000122344444444444444
Q ss_pred HHHhcCCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC--C----HHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010642 189 EVFKGMPE--KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP--D----DQTFTGVLSACSHCGLVDEGMMFLDRM 260 (505)
Q Consensus 189 ~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~----~~t~~~ll~~~~~~g~~~~a~~~~~~~ 260 (505)
+-+....+ .+..-++....+|...|.+.+....-....+.|..- + ...+..+..++.+.++++.|+..|.+.
T Consensus 245 q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 245 QHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 44443322 222234444555666666555555444444333210 0 011222333555667777888877776
Q ss_pred hhhcCCcCCcchHH-------------------------HHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHH
Q 010642 261 SKDFGILPNIHHYG-------------------------CVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACR 313 (505)
Q Consensus 261 ~~~~~~~p~~~~~~-------------------------~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 313 (505)
... ...|+...-. .-...+.+.|++..|.+.+.++ ...| |...|.....+|.
T Consensus 325 Lte-~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~ 403 (539)
T KOG0548|consen 325 LTE-HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYL 403 (539)
T ss_pred hhh-hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 654 2333222110 0122345667888888888777 4445 4567777777888
Q ss_pred hcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 314 IHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
+.|++..|..-.+..++++|+....|.-=..++....+|+.|.+.|.+-.+..
T Consensus 404 kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 404 KLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88888888888888888888777777777777777778888888877665543
No 109
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=4.2e-05 Score=76.49 Aligned_cols=232 Identities=10% Similarity=0.046 Sum_probs=114.6
Q ss_pred ChhhHHHHHH--HHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC-C-----------
Q 010642 29 NPFACSFAIK--CCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ-R----------- 94 (505)
Q Consensus 29 ~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~----------- 94 (505)
|..|=..++. .|...|+.+.|.+-.+.+. +..+|..+..++.+..+++-|.-.+..|.. +
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 3344444432 2345566666655444332 345667777777777666666666655542 0
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHH
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSL 174 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 174 (505)
+...-....-.....|..++|+.+|++-++ |..+=..|...|.+++|.++-+.--+ +. -..+|...
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----------~DLlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy~y 864 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKR-----------YDLLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYYNY 864 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----------HHHHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHHHH
Confidence 101111112223345556666666665544 22333344555666666555432111 11 12234444
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC-----------------------CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 010642 175 IAMYSKCGSLGMAFEVFKGMPE-----------------------KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVF 231 (505)
Q Consensus 175 ~~~y~~~g~~~~A~~~~~~m~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 231 (505)
..-+-..++.+.|++.|++... +|...|.-....+-..|+.+.|+.+|...++
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 4444445556666666554432 1233333333444455666666666655443
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC
Q 010642 232 PDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 232 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 296 (505)
|.+++...+-.|+.++|-++-++-- |......|.+.|-..|++.+|..+|.+.
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~esg-------d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEESG-------DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHhcc-------cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3444555555666666665544331 3334445666666667777776666654
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.48 E-value=1.2e-05 Score=72.85 Aligned_cols=181 Identities=12% Similarity=0.020 Sum_probs=126.4
Q ss_pred CCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCch---hHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-Chh---H
Q 010642 131 PDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKM---NLCNSLIAMYSKCGSLGMAFEVFKGMPE--K-DVV---S 201 (505)
Q Consensus 131 pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~---~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~-~~~---~ 201 (505)
.....+..+...+...|+++.|...++.+.+.. +.++ .++..+..+|.+.|++++|...|+++.+ | +.. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345677788888999999999999999998864 3332 4678889999999999999999998863 2 222 4
Q ss_pred HHHHHHHHHhC--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcch
Q 010642 202 WSAMISGLAMN--------GHGRDAIESFGAMQRAGVFPDDQ-TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHH 272 (505)
Q Consensus 202 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 272 (505)
+..+..++.+. |++++|.+.|+.+... .|+.. ....+... .. . .... . ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~------~~~~-~--------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---L------RNRL-A--------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---H------HHHH-H--------HH
Confidence 55566666654 7789999999999874 44432 22111111 00 0 0000 0 01
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHC-CC---CC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 010642 273 YGCVVDLLGRAGLLDQAYQLITSM-GV---KP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKA 333 (505)
Q Consensus 273 ~~~li~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 333 (505)
...+...|.+.|++++|...+++. .. .| ....+..+..++...|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 224566788899999999888887 22 23 346788888999999999999998888776554
No 111
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=0.00052 Score=70.48 Aligned_cols=242 Identities=14% Similarity=0.161 Sum_probs=150.0
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHH
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSL 174 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 174 (505)
....|+.+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.+++-.+++..+.+..-.| .+-+.|
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eL 1172 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSEL 1172 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHH
Confidence 3567999999999999999999888665 356788999999999999999999988888775444 455678
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC-----------------------CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 010642 175 IAMYSKCGSLGMAFEVFKGMPE-----------------------KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVF 231 (505)
Q Consensus 175 ~~~y~~~g~~~~A~~~~~~m~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 231 (505)
+-+|++.+++.+-+++...-.. .++..|..+...+...|++..|.+.-++.
T Consensus 1173 i~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ 1246 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------ 1246 (1666)
T ss_pred HHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------
Confidence 9999999998887776532110 13344555555555566665555544432
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHH
Q 010642 232 PDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLL 309 (505)
Q Consensus 232 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 309 (505)
-+..||..+-.+|...+.+.-|. |-. ..+.....-..-|+.-|...|.+++...+++.. |+.. ....|+-|.
T Consensus 1247 ns~ktWK~VcfaCvd~~EFrlAQ-----iCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELa 1320 (1666)
T KOG0985|consen 1247 NSTKTWKEVCFACVDKEEFRLAQ-----ICG-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELA 1320 (1666)
T ss_pred cchhHHHHHHHHHhchhhhhHHH-----hcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHH
Confidence 14456666666666555443322 211 012223334556777777778888777777766 5442 334555555
Q ss_pred HHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 310 GACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
-.|.+-. ++.-.+.++..... ...--+++++..+.-|.+..-++.+-.+
T Consensus 1321 iLYskyk-p~km~EHl~LFwsR-----vNipKviRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1321 ILYSKYK-PEKMMEHLKLFWSR-----VNIPKVIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred HHHHhcC-HHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5554433 33333333322211 1122467777777778877777765443
No 112
>PLN02789 farnesyltranstransferase
Probab=98.43 E-value=0.00028 Score=66.17 Aligned_cols=143 Identities=12% Similarity=0.116 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHHCC-ChhHHHHHHHHchhccCCCCCCHHHHHHHHH
Q 010642 66 QLMTTLMDLYSTFEKSFEACKLFDEIPQR---DTVAWNVLISCYIRNQ-RTRDALCLFDNLNREESGCKPDDVTCLLVLQ 141 (505)
Q Consensus 66 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~ 141 (505)
.++..+-..+...+..++|+.+.+.+.+. +..+|+.....+...| ++++++..++++.. . -+-+..+|+....
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~--~-npknyqaW~~R~~ 114 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE--D-NPKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH--H-CCcchHHhHHHHH
Confidence 35555666677788999999999988753 5567777777777777 67999999999977 2 2334455665555
Q ss_pred HHHhccCh--HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhC
Q 010642 142 ACAHLGAL--EFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMN 212 (505)
Q Consensus 142 ~~~~~~~~--~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~ 212 (505)
.+.+.+.. +.+..+.+.+++.. +-+..+|+....++.+.|++++|++.++++.+ .|..+|+.....+.+.
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 55556652 56677777887765 56777888777777778888888888887764 3556676665555443
No 113
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.00019 Score=73.47 Aligned_cols=141 Identities=16% Similarity=0.252 Sum_probs=109.6
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHH
Q 010642 198 DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVV 277 (505)
Q Consensus 198 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 277 (505)
.+..|..+..+-.+.|...+|++-|-+. -|...|.-++..+.+.|.+++-.+++...+++ .-.|.+. +.||
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELI 1173 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHH
Confidence 4567999999999999999999887553 36778999999999999999999998888775 5556554 5799
Q ss_pred HHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHH
Q 010642 278 DLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKE 357 (505)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 357 (505)
-+|++.+++.+.++++. -||......+..-|...|.++.|.-++... +.|..|...+...|.+..|..
T Consensus 1174 ~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred HHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888874 367777777778888888888887776643 456666666666666666554
Q ss_pred HH
Q 010642 358 LR 359 (505)
Q Consensus 358 ~~ 359 (505)
.-
T Consensus 1242 ~a 1243 (1666)
T KOG0985|consen 1242 AA 1243 (1666)
T ss_pred Hh
Confidence 33
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.41 E-value=3.6e-05 Score=67.06 Aligned_cols=154 Identities=9% Similarity=0.087 Sum_probs=108.5
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010642 175 IAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGM 254 (505)
Q Consensus 175 ~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 254 (505)
+-.|...|+++.+....+.+..+. ..|...++.++++..++...+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 445677777766654443332221 01223566677777777776643 235677888888888999999999
Q ss_pred HHHHHHhhhcCCcCCcchHHHHHHH-HHhcCC--hHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 010642 255 MFLDRMSKDFGILPNIHHYGCVVDL-LGRAGL--LDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLI 329 (505)
Q Consensus 255 ~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 329 (505)
..|++..+- .+.+...+..+..+ +...|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++.
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999888752 23356677777776 467677 58999999888 5555 56678888888899999999999999999
Q ss_pred HhcCCCCchH
Q 010642 330 ELKAQESGDY 339 (505)
Q Consensus 330 ~~~~~~~~~~ 339 (505)
+..|++..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9988776544
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.40 E-value=8.5e-05 Score=73.64 Aligned_cols=215 Identities=15% Similarity=0.140 Sum_probs=161.2
Q ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHH
Q 010642 62 QLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQ 141 (505)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~ 141 (505)
+|--..-..+...+.+.|-+..|..+|+++ ..|..+|.+|...|+..+|..+..+..+ -+||+..|..+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le----k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE----KDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc----CCCcchhHHHhhh
Confidence 344445566777888899999999999874 5688889999999998888888776643 5788888888888
Q ss_pred HHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCChHHH
Q 010642 142 ACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEK---DVVSWSAMISGLAMNGHGRDA 218 (505)
Q Consensus 142 ~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A 218 (505)
......-+++|.++.++.-.. ....+.....+.++++++.+.|+.-.+- -..+|-....+..+.+++..|
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 877777777887777654432 1222222234478888888888865432 446788888888888889888
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC
Q 010642 219 IESFGAMQRAGVFPDD-QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 219 ~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 296 (505)
.+.|..-.. ..||. ..|+.+-.+|.+.++-.+|...+.+..+- + .-+...|-..+....+.|.+++|.+.+.++
T Consensus 539 v~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 539 VKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 888888776 46665 57888888999999999999888888874 4 445556667777788888999988888877
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.39 E-value=5.6e-05 Score=65.96 Aligned_cols=154 Identities=13% Similarity=0.130 Sum_probs=96.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHh
Q 010642 203 SAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGR 282 (505)
Q Consensus 203 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 282 (505)
..+-..+...|+.+....+..+.... -.-|.......+....+.|++.+|...+.+... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 33445555566666666555554332 111223333456666667777777777777665 555666677777777777
Q ss_pred cCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHH
Q 010642 283 AGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELR 359 (505)
Q Consensus 283 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 359 (505)
.|++++|..-|.+. .+.| +....+.|.-.+.-.|+.+.|..++.......+.++.+-..|.......|++++|..+.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 77777776666665 3444 34456666666777777777777777777666666666677777777777777776654
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.38 E-value=1.4e-05 Score=65.84 Aligned_cols=108 Identities=6% Similarity=-0.125 Sum_probs=68.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHh
Q 010642 237 FTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRI 314 (505)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 314 (505)
+.....++...|++++|...|+.... --+.+...|..+..++.+.|++++|...|++. ...| +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 33445566667777777777777664 22334556666666677777777777777766 3344 45566666666777
Q ss_pred cCchhHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010642 315 HKHVTLGERVIEHLIELKAQESGDYVLLLNLY 346 (505)
Q Consensus 315 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 346 (505)
.|+.++|+..++..++..|+++..+.....+.
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 77777777777777777777666665544443
No 118
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.00036 Score=61.08 Aligned_cols=245 Identities=11% Similarity=0.046 Sum_probs=130.5
Q ss_pred CCCHHHHHHHHhcCCC--CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHH-HHH
Q 010642 78 FEKSFEACKLFDEIPQ--RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEF-GEK 154 (505)
Q Consensus 78 ~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~-a~~ 154 (505)
.|++..++..-..... .++..-.-+-++|...|++...+. ++.. +-.|....+..+.......++.+. ..+
T Consensus 21 ~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI~~---~~~~~lqAvr~~a~~~~~e~~~~~~~~~ 94 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EIKE---GKATPLQAVRLLAEYLELESNKKSILAS 94 (299)
T ss_pred hhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---cccc---ccCChHHHHHHHHHHhhCcchhHHHHHH
Confidence 4556555554443322 233333344556666666543322 2211 223333333333333333333332 233
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 010642 155 IHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDD 234 (505)
Q Consensus 155 i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 234 (505)
+.+.+.......+......-...|...|++++|.+...... +......=...+.+..+.+-|.+.+++|.+- -+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chH
Confidence 44444444334444444445566788888888888887743 3333333344556677778888888888763 255
Q ss_pred HHHHHHHHHHhc----cCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC--CCCCCHHHHHHH
Q 010642 235 QTFTGVLSACSH----CGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM--GVKPDSTIWRTL 308 (505)
Q Consensus 235 ~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 308 (505)
.|.+-|.+++.+ .+.+..|.-+|++|.+ ..+|+..+.+...-++...|++++|..++++. .-..++.+...+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 666666665543 4556777777777765 35566666666666666677777777777666 222345555555
Q ss_pred HHHHHhcCch-hHHHHHHHHHHHhcCCC
Q 010642 309 LGACRIHKHV-TLGERVIEHLIELKAQE 335 (505)
Q Consensus 309 l~~~~~~g~~-~~a~~~~~~~~~~~~~~ 335 (505)
+......|.. +.-.+.+.++....|..
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 5444444443 33344555555544443
No 119
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.37 E-value=0.00032 Score=69.54 Aligned_cols=258 Identities=14% Similarity=0.133 Sum_probs=139.5
Q ss_pred HHHhCCCHHHHHHHHhcCCCCChhH--HHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHH
Q 010642 74 LYSTFEKSFEACKLFDEIPQRDTVA--WNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEF 151 (505)
Q Consensus 74 ~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~ 151 (505)
+......+.+|+.+++.+..+++.+ |-.+..-|+..|+++-|.++|.+.- .++-.+..|.+.|.++.
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD-----------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc-----------hhHHHHHHHhccccHHH
Confidence 3444556666666666665543332 4455566666666766666665441 23445556666666666
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 010642 152 GEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVF 231 (505)
Q Consensus 152 a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 231 (505)
|.++-.+. +|.......|-+-..-.-+.|++.+|+++|-.+..|+. .|..|-+.|..++.+++..+- .
T Consensus 810 a~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h 877 (1636)
T KOG3616|consen 810 AFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----H 877 (1636)
T ss_pred HHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----C
Confidence 66554332 23233444555555556666777777777776666654 345566677777666665543 2
Q ss_pred CCH--HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCC-CC---HHHH
Q 010642 232 PDD--QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVK-PD---STIW 305 (505)
Q Consensus 232 p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~---~~~~ 305 (505)
|+. .|...+..-+...|++..|...|-+.. -|.+-+.+|-..+.+++|.++-+.-|-. .. ...|
T Consensus 878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flw 947 (1636)
T KOG3616|consen 878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLW 947 (1636)
T ss_pred hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHH
Confidence 222 344555566666677777766655443 2445566666666666666665544111 00 1122
Q ss_pred HH------HHHHHHhcC-------------chhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 306 RT------LLGACRIHK-------------HVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 306 ~~------ll~~~~~~g-------------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
.. .+..+-++| -++.|..+.+-..+.. -+....-+..-+...|++++|-+-+-+..+.+
T Consensus 948 aksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k--~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 948 AKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK--MGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc--CccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 11 112222333 3333333333332222 12345566666778888888877666555443
No 120
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.36 E-value=1.1e-05 Score=66.47 Aligned_cols=107 Identities=13% Similarity=0.011 Sum_probs=91.5
Q ss_pred HHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 255 MFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 255 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
.++++..+ +.|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++.+..
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34555543 3344 3556788889999999999999998 5556 57788999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 333 AQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 333 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
|.++..+..+..++...|++++|...++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987654
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.36 E-value=0.00016 Score=75.58 Aligned_cols=236 Identities=9% Similarity=-0.006 Sum_probs=145.3
Q ss_pred ChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHH
Q 010642 29 NPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIR 108 (505)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 108 (505)
+...+..|+..+...+++++|.++.+..++.. +.....|-.+...|...++.+++..+ .++.....
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~ 95 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQ 95 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccc
Confidence 34567788888888888888888888666553 22333444444466666665554443 33444444
Q ss_pred CCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 010642 109 NQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAF 188 (505)
Q Consensus 109 ~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~ 188 (505)
..++.-...+...|.. ..-+...+..+..+|.+.|+.+++..+++++++.. +.|+.+.|.+...|+.. ++++|.
T Consensus 96 ~~~~~~ve~~~~~i~~----~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 96 NLKWAIVEHICDKILL----YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred ccchhHHHHHHHHHHh----hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHH
Confidence 5555444444445533 33455677788888888899999999999988887 67888888888888888 888888
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHHhhhcCCc
Q 010642 189 EVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTF-TGVLSACSHCGLVDEGMMFLDRMSKDFGIL 267 (505)
Q Consensus 189 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 267 (505)
+++.+.. ..|...+++.++.++|.++... .|+...+ ..++. .+....+..
T Consensus 170 ~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~----------------ki~~~~~~~ 220 (906)
T PRK14720 170 TYLKKAI-----------YRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIER----------------KVLGHREFT 220 (906)
T ss_pred HHHHHHH-----------HHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHHH----------------HHHhhhccc
Confidence 8876543 2366677888888888888774 3333322 22222 222111111
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHH
Q 010642 268 PNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACR 313 (505)
Q Consensus 268 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 313 (505)
--+.++-.+...|-..++++++..+++.+ ...| |.....-++..|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 22233444555566666777777777766 4444 3334444444443
No 122
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.32 E-value=0.00013 Score=74.62 Aligned_cols=81 Identities=12% Similarity=0.008 Sum_probs=54.2
Q ss_pred HhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHH
Q 010642 281 GRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKEL 358 (505)
Q Consensus 281 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 358 (505)
...|.+.-|..-|-+. -..| ...+|..+...+..+.+++-|...|.+...+.|.+...|......-...|+.-++..+
T Consensus 827 sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~l 906 (1238)
T KOG1127|consen 827 SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLIL 906 (1238)
T ss_pred hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444555554444333 1222 4556666666677777888888888888888888877777777777777877777777
Q ss_pred HHH
Q 010642 359 REF 361 (505)
Q Consensus 359 ~~~ 361 (505)
|..
T Consensus 907 faH 909 (1238)
T KOG1127|consen 907 FAH 909 (1238)
T ss_pred HHh
Confidence 765
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.31 E-value=7.1e-05 Score=65.33 Aligned_cols=157 Identities=15% Similarity=0.059 Sum_probs=109.0
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHH
Q 010642 64 DSQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVL 140 (505)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll 140 (505)
|..+ ..+-..+...|+-+.+..+...... .|....+.++....+.|++.+|+..|++... .-++|..+|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~---l~p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR---LAPTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc---cCCCChhhhhHHH
Confidence 4444 4555566666776666666665432 3555666677888888888888888888765 4566777888888
Q ss_pred HHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHH
Q 010642 141 QACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRD 217 (505)
Q Consensus 141 ~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~ 217 (505)
-+|.+.|+.+.|..-|.+..+.. +-++.+.|.|.-.|.-.|+++.|..++.... ..|...-..+.......|++++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHH
Confidence 88888888888888888887763 4556677777777777788888877776543 2355666666667777777777
Q ss_pred HHHHHHHH
Q 010642 218 AIESFGAM 225 (505)
Q Consensus 218 A~~~~~~m 225 (505)
|.++..+-
T Consensus 221 A~~i~~~e 228 (257)
T COG5010 221 AEDIAVQE 228 (257)
T ss_pred HHhhcccc
Confidence 77765543
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.28 E-value=9.5e-05 Score=76.41 Aligned_cols=157 Identities=10% Similarity=0.071 Sum_probs=123.8
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHH
Q 010642 197 KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDD-QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGC 275 (505)
Q Consensus 197 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 275 (505)
.++..+-.|.....+.|++++|..+++...+ +.||. .....+...+.+.+.+++|....++... .-+-+......
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 3577888888999999999999999999988 57776 4566778889999999999999999986 33345667778
Q ss_pred HHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHH
Q 010642 276 VVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWE 353 (505)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 353 (505)
+..++.+.|++++|..+|++. .-.|+ ..++..+..++...|+.++|...|++..+...+....|+.++. +..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~------~~~ 233 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV------DLN 233 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH------HHH
Confidence 888899999999999999998 33444 6788889999999999999999999999887666566554432 233
Q ss_pred HHHHHHHHHH
Q 010642 354 KVKELREFMN 363 (505)
Q Consensus 354 ~a~~~~~~m~ 363 (505)
.-...++.+.
T Consensus 234 ~~~~~~~~~~ 243 (694)
T PRK15179 234 ADLAALRRLG 243 (694)
T ss_pred HHHHHHHHcC
Confidence 3344555554
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.28 E-value=0.00015 Score=75.89 Aligned_cols=228 Identities=8% Similarity=0.086 Sum_probs=139.7
Q ss_pred CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHH-HHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHH
Q 010642 94 RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTC-LLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCN 172 (505)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~-~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 172 (505)
.+...|..|+..|...+++++|.++.+.... ..|+...+ ..+...+.+.++.+.+..+ .+..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~----~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~----------- 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLK----EHKKSISALYISGILSLSRRPLNDSNLL--NLID----------- 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hCCcceehHHHHHHHHHhhcchhhhhhh--hhhh-----------
Confidence 4678899999999999999999999996655 55665433 3333355666666555544 2222
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 010642 173 SLIAMYSKCGSLGMAFEVFKGMPE--KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLV 250 (505)
Q Consensus 173 ~l~~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 250 (505)
......++.-...+...|.. .+..++-.+..+|-+.|+.++|...|+++.+.. .-|....|.+...++.. ++
T Consensus 92 ----~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 92 ----SFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred ----hcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 22222222222222222221 133356667778888888888888888888765 22556777777777777 88
Q ss_pred HHHHHHHHHHhhhcCCcCCcchHHHHHH---HHHh--cCChHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCchhHH
Q 010642 251 DEGMMFLDRMSKDFGILPNIHHYGCVVD---LLGR--AGLLDQAYQLITSM----GVKPDSTIWRTLLGACRIHKHVTLG 321 (505)
Q Consensus 251 ~~a~~~~~~~~~~~~~~p~~~~~~~li~---~~~~--~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~g~~~~a 321 (505)
++|.+++.+....+ .+..-|+.+.. -++. ..+.+.-.++.+.+ +..--..++--+...|...++++++
T Consensus 166 ~KA~~m~~KAV~~~---i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 166 EKAITYLKKAIYRF---IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred HHHHHHHHHHHHHH---HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHH
Confidence 88888777776531 01111111111 1111 11222222222222 3233345566666788899999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHH
Q 010642 322 ERVIEHLIELKAQESGDYVLLLNLYS 347 (505)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~~~~~ 347 (505)
..+++.+++.+|.|..+..-++..|.
T Consensus 243 i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 243 IYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 99999999999999888888888876
No 126
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=0.00024 Score=71.30 Aligned_cols=242 Identities=17% Similarity=0.153 Sum_probs=172.3
Q ss_pred CChhHHHHHHH--HHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCC--------CCCC
Q 010642 63 LDSQLMTTLMD--LYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESG--------CKPD 132 (505)
Q Consensus 63 ~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------~~pd 132 (505)
=|..+.-++++ .|..-|+.+.|.+-.+.+. +...|..|.+.+.+..+.+-|.-.+-.|..- .| ..|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~a-RgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNA-RGARALRRAQQNGE 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhh-hhHHHHHHHHhCCc
Confidence 36667777775 4777899999988887765 4578999999999998888777666665431 11 1222
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhHHHHHHHHHHh
Q 010642 133 DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEK-DVVSWSAMISGLAM 211 (505)
Q Consensus 133 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~ 211 (505)
.+=.-+.-.....|.+++|+.+|.+..+.+ .|=..|-..|.+++|.++-+.-..- -..||..-..-+-.
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 222222333467899999999999887643 4556788899999999886543221 12345555555556
Q ss_pred CCChHHHHHHHHHH----------HHCC---------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcch
Q 010642 212 NGHGRDAIESFGAM----------QRAG---------VFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHH 272 (505)
Q Consensus 212 ~g~~~~A~~~~~~m----------~~~g---------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 272 (505)
.++.+.|++.|++. .... -+.|...|.......-..|+.+.|+.+|.....
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------- 940 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------- 940 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------
Confidence 67777777777642 2111 123445566667777789999999999988864
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 010642 273 YGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIE 330 (505)
Q Consensus 273 ~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 330 (505)
|-+++...+-.|+.++|-++-++-| |......|.+.|-..|++.+|..+|.++..
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 5678888899999999999999875 666666788999999999999999888654
No 127
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.24 E-value=0.0033 Score=60.65 Aligned_cols=339 Identities=12% Similarity=0.057 Sum_probs=200.4
Q ss_pred CCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCC--ChhHHHHHHH
Q 010642 27 PTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQR--DTVAWNVLIS 104 (505)
Q Consensus 27 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~ 104 (505)
+-|..+|..+++-+... ..++++..+++++.. ++.....|..-|..-.+..+++..+++|.+.... ++..|..-++
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 44888999999876665 999999999999764 4667889999999999999999999999988753 6777877776
Q ss_pred HHHH-CCChh----HHHHHHHHchhccCCCCCCHH-HHHH---HHH------HHHhccChHHHHHHHHHHHHcCCCCchh
Q 010642 105 CYIR-NQRTR----DALCLFDNLNREESGCKPDDV-TCLL---VLQ------ACAHLGALEFGEKIHRYISEHGYGSKMN 169 (505)
Q Consensus 105 ~~~~-~g~~~----~A~~~~~~m~~~~~~~~pd~~-t~~~---ll~------~~~~~~~~~~a~~i~~~~~~~~~~~~~~ 169 (505)
---+ +|+.. ...+.|+-...+ .|+.+-.. .|+. .+. -+....+++..++++++++..-+..=..
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~k-ig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEK-IGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHH-hccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 3322 22222 223344443332 44433322 1222 222 2333445667777777776542211111
Q ss_pred HHHH------HHHH-------HHhcCCHHHHHHHHhcCCC------CC---------------hhHHHHHHH--------
Q 010642 170 LCNS------LIAM-------YSKCGSLGMAFEVFKGMPE------KD---------------VVSWSAMIS-------- 207 (505)
Q Consensus 170 ~~~~------l~~~-------y~~~g~~~~A~~~~~~m~~------~~---------------~~~~~~li~-------- 207 (505)
.|+- =++- --+...+..|.++++++.. ++ +..|-.+|.
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 2211 0110 1123345556666554421 00 001211111
Q ss_pred --------------------H---------------------HHhCCC-------hHHHHHHHHHHHHCCCCCCHHHHHH
Q 010642 208 --------------------G---------------------LAMNGH-------GRDAIESFGAMQRAGVFPDDQTFTG 239 (505)
Q Consensus 208 --------------------~---------------------~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ 239 (505)
. +...|+ .+++.++++.....-..-+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 111111 2334444444332211112223322
Q ss_pred HHHHHh---ccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC---CCCC-CHHHHHHHHHHH
Q 010642 240 VLSACS---HCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM---GVKP-DSTIWRTLLGAC 312 (505)
Q Consensus 240 ll~~~~---~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p-~~~~~~~ll~~~ 312 (505)
+.+.-- .....+....+++++.....+.|+. +|-.++..-.|..-+..|..+|.+. +..+ ++.+..+++.-+
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 222111 1112445556666666654555553 6777888888888899999999988 4444 566777777665
Q ss_pred HhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 010642 313 RIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTT 370 (505)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 370 (505)
+ .++.+.|.++|+.-++..++++..-...++-+...++-..+..+|++....++.++
T Consensus 413 c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred h-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 4 56788999999998888887776666788888899999999999999988766554
No 128
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.24 E-value=2.1e-06 Score=51.32 Aligned_cols=35 Identities=34% Similarity=0.615 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 010642 200 VSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDD 234 (505)
Q Consensus 200 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 234 (505)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999998873
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.24 E-value=0.00016 Score=68.59 Aligned_cols=175 Identities=14% Similarity=0.073 Sum_probs=127.6
Q ss_pred HHHHHHHHhcCCC------CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010642 184 LGMAFEVFKGMPE------KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFL 257 (505)
Q Consensus 184 ~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 257 (505)
+.+++..-+.++. ++...+...+.+.........+..++.+-.+ ..-...-|..-+ .+...|.+++|+..+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG~A~-~~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYGRAL-QTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHHHHH-HHHHhcccchHHHHH
Confidence 4455555555542 3455566666555444333333333332222 111223344444 345679999999999
Q ss_pred HHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 010642 258 DRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQE 335 (505)
Q Consensus 258 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 335 (505)
..+.. ..+-|+..+....+.+.+.|+.++|.+.++++ ...|+ ...+-.+..++.+.|+..+|+++++......|.+
T Consensus 330 ~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d 407 (484)
T COG4783 330 QPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED 407 (484)
T ss_pred HHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence 99987 44456667777889999999999999999998 66777 5677778899999999999999999999999999
Q ss_pred CchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 336 SGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 336 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
+..|..|..+|...|+..++.....+..
T Consensus 408 p~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 408 PNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred chHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 9999999999999999999988877664
No 130
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.23 E-value=4.1e-05 Score=73.21 Aligned_cols=121 Identities=18% Similarity=0.202 Sum_probs=64.5
Q ss_pred HHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChH
Q 010642 71 LMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALE 150 (505)
Q Consensus 71 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~ 150 (505)
|+..+...++++.|+.+|+++.+.++..+..++..+...++..+|++++++... ..+-|...+..-...+.+.++++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~---~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK---ENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHH
Confidence 333444455566666666665555545555555555555555556665555544 12223444444444455555556
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 010642 151 FGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP 195 (505)
Q Consensus 151 ~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 195 (505)
.|.++.+++.+.. |.+..+|..|..+|.+.|+++.|+..++.++
T Consensus 252 lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 252 LALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666655555543 3344455555555555555555555555554
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.22 E-value=0.00031 Score=72.68 Aligned_cols=128 Identities=13% Similarity=0.140 Sum_probs=78.3
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCH-HHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHH
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDD-VTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNS 173 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ 173 (505)
++..+-.|.....+.|.+++|+.+++...+ +.||. .....+..++.+.+.+++|....++..... +.+....+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~----~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ----RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh----hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 356666666666667777777777766654 44543 344555566666666666666666666654 445555666
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010642 174 LIAMYSKCGSLGMAFEVFKGMPEKD---VVSWSAMISGLAMNGHGRDAIESFGAMQR 227 (505)
Q Consensus 174 l~~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 227 (505)
+..++.+.|++++|..+|++...++ ..+|..+..++-..|+.++|...|++..+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666666655332 34555555666666666666666666554
No 132
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.20 E-value=4.3e-05 Score=73.02 Aligned_cols=123 Identities=17% Similarity=0.150 Sum_probs=96.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHh
Q 010642 237 FTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRI 314 (505)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 314 (505)
...|+..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++. ...| +...+......+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345566666777888888888888764 233 4455777777777888888888777 3334 55566666677889
Q ss_pred cCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 315 HKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 315 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
.++++.|..+++++.+..|.+..+|..|+.+|...|++++|+..++.+.-
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999999999999999999999999999999999999988763
No 133
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.19 E-value=0.011 Score=60.51 Aligned_cols=179 Identities=15% Similarity=0.097 Sum_probs=105.8
Q ss_pred hhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHH--HccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Q 010642 6 SMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCC--MKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFE 83 (505)
Q Consensus 6 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 83 (505)
...+++..|+....++++. .|+. .|..++.++ .+.|..++|..+++.....+ ..|..+...+-..|-..|..++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhH
Confidence 4567788888888887775 2443 355555555 47788888887777665444 3377788888888888888888
Q ss_pred HHHHHhcCCC--CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhcc----------ChHH
Q 010642 84 ACKLFDEIPQ--RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLG----------ALEF 151 (505)
Q Consensus 84 A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~----------~~~~ 151 (505)
|..++++... |+..-...+..+|++.+.+.+-.+.=-++-+ .++-+.+.|-++++...+.- -..-
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK---~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK---NFPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 8888888765 4555555666677777766553333222222 23335566666665554321 1234
Q ss_pred HHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHH
Q 010642 152 GEKIHRYISEHGYGS-KMNLCNSLIAMYSKCGSLGMAFEVF 191 (505)
Q Consensus 152 a~~i~~~~~~~~~~~-~~~~~~~l~~~y~~~g~~~~A~~~~ 191 (505)
|....+.+++.+-+. +..=.-.........|++++|..++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l 213 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFL 213 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHH
Confidence 555666666543111 1111122233344566677776666
No 134
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.17 E-value=0.0012 Score=68.09 Aligned_cols=173 Identities=9% Similarity=-0.035 Sum_probs=108.9
Q ss_pred HHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 010642 186 MAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 186 ~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (505)
.|...+.+.. ..+...||+|.-. ...|.+.-|...|-+-.... +....+|..+.-.|.+..+++.|...|...+.
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 4555555433 3566777776655 45566666666665554432 22456777777777888899999999988874
Q ss_pred hcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCchhHH----------HHHH
Q 010642 263 DFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-------GVKPDSTIWRTLLGACRIHKHVTLG----------ERVI 325 (505)
Q Consensus 263 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a----------~~~~ 325 (505)
-.+.+...|-.........|+.-++..+|..- |--|+..-|-........+|+.++- .-.+
T Consensus 879 --LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 879 --LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred --cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 23334556655555556678888888887662 4445555555444445556555443 3344
Q ss_pred HHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHH
Q 010642 326 EHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFM 362 (505)
Q Consensus 326 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 362 (505)
++.....|+...+|...+....+.+.+++|.....+.
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4445555777778888888888888887777766654
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.13 E-value=4.9e-05 Score=62.00 Aligned_cols=95 Identities=17% Similarity=0.228 Sum_probs=71.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHh
Q 010642 271 HHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSS 348 (505)
Q Consensus 271 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 348 (505)
.....+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++...+..|.++..+..+...|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 44556666777778888888777776 3334 456777777777788888888888888888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHhC
Q 010642 349 VGDWEKVKELREFMNEK 365 (505)
Q Consensus 349 ~g~~~~a~~~~~~m~~~ 365 (505)
.|++++|...++...+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888888777654
No 136
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.00061 Score=59.66 Aligned_cols=243 Identities=10% Similarity=0.068 Sum_probs=146.4
Q ss_pred HHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 010642 103 ISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCG 182 (505)
Q Consensus 103 i~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g 182 (505)
++-+.-.|.+..++..-..... .+-+...-..+-++|...|.+.... ..+.... .|.......+......-+
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~----~~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~ 86 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSS----SKTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELES 86 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcc----ccchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcc
Confidence 4455566777777666555433 2244555555666776666544322 2222222 333333333333333334
Q ss_pred CHHHHH-HHHhcCCCC----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010642 183 SLGMAF-EVFKGMPEK----DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFL 257 (505)
Q Consensus 183 ~~~~A~-~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 257 (505)
+.++-. ++.+.+..+ +......-...|...|++++|++...... +......=+..+.+..+++-|.+.+
T Consensus 87 ~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~l 160 (299)
T KOG3081|consen 87 NKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKEL 160 (299)
T ss_pred hhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433322 333334322 22222333456788888999888877621 2222222234456677888888888
Q ss_pred HHHhhhcCCcCCcchHHHHHHHHHh----cCChHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHh
Q 010642 258 DRMSKDFGILPNIHHYGCVVDLLGR----AGLLDQAYQLITSM--GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIEL 331 (505)
Q Consensus 258 ~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 331 (505)
+.|.+- .+..+.+.|..++.+ .+.+.+|.-+|++| ...|+..+.+-...++...|++++|..+++.++..
T Consensus 161 k~mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 161 KKMQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 888752 244555555555543 46788888889888 47788888888888888889999999999998888
Q ss_pred cCCCCchHHHHHHHHHhCCCHHHH-HHHHHHHH
Q 010642 332 KAQESGDYVLLLNLYSSVGDWEKV-KELREFMN 363 (505)
Q Consensus 332 ~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 363 (505)
++.++.+...++-.-...|+-.++ .+...+++
T Consensus 237 d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 237 DAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 888888888777777777765443 34444444
No 137
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.11 E-value=5.9e-06 Score=48.99 Aligned_cols=33 Identities=27% Similarity=0.496 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 010642 200 VSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP 232 (505)
Q Consensus 200 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 232 (505)
.+||.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 577888888888888888888888888877776
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.10 E-value=0.0012 Score=62.96 Aligned_cols=143 Identities=13% Similarity=0.033 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccCCHHHHHHHHHHHhhhcCCcCC-cchHHHHHH
Q 010642 201 SWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFT-GVLSACSHCGLVDEGMMFLDRMSKDFGILPN-IHHYGCVVD 278 (505)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 278 (505)
.+-.....+...|++++|+..++.+... .||...|. .....+...++.++|.+.++.+... .|+ ....-.+..
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHH
Confidence 3333444455677777777777777663 44544443 4455677777788887777777652 344 445556677
Q ss_pred HHHhcCChHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHH
Q 010642 279 LLGRAGLLDQAYQLITSM--GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVK 356 (505)
Q Consensus 279 ~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 356 (505)
+|.+.|++.+|...++.. ..+-|+..|..|..+|...|+..++.....+... ..|+|+.|.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~-----------------~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA-----------------LAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH-----------------hCCCHHHHH
Confidence 777778888777777776 3334667777777888888877777776666532 445666666
Q ss_pred HHHHHHHhC
Q 010642 357 ELREFMNEK 365 (505)
Q Consensus 357 ~~~~~m~~~ 365 (505)
..+....+.
T Consensus 446 ~~l~~A~~~ 454 (484)
T COG4783 446 IFLMRASQQ 454 (484)
T ss_pred HHHHHHHHh
Confidence 666555543
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.09 E-value=4.6e-06 Score=49.78 Aligned_cols=35 Identities=34% Similarity=0.557 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCH
Q 010642 97 VAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDD 133 (505)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~ 133 (505)
.+||++|.+|++.|++++|.++|++|.+ .|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~--~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLE--RGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCCC
Confidence 3689999999999999999999999988 8888873
No 140
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.99 E-value=8.6e-05 Score=60.40 Aligned_cols=96 Identities=10% Similarity=0.001 Sum_probs=83.3
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 010642 270 IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYS 347 (505)
Q Consensus 270 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 347 (505)
....-.+.-.+...|++++|.++|+.. -+.| +..-|..|..++...|++++|+..+.....++|+++.++..+..+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344455666678899999999999988 5556 46678888888999999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHHHHHhC
Q 010642 348 SVGDWEKVKELREFMNEK 365 (505)
Q Consensus 348 ~~g~~~~a~~~~~~m~~~ 365 (505)
..|+.+.|.+.|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999987653
No 141
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.94 E-value=0.00032 Score=57.17 Aligned_cols=101 Identities=9% Similarity=0.027 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHH
Q 010642 235 QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGAC 312 (505)
Q Consensus 235 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 312 (505)
.....+...+...|++++|...++.+... .+.+...+..+...+.+.|++++|...+++. ...| +...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 34555666677778888888888877652 2345667777778888888888888888776 3444 456677777788
Q ss_pred HhcCchhHHHHHHHHHHHhcCCCCc
Q 010642 313 RIHKHVTLGERVIEHLIELKAQESG 337 (505)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~~~~~ 337 (505)
...|+++.|...++...+..|.+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 96 LALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhccccch
Confidence 8888888888888888888876644
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.92 E-value=0.00066 Score=56.05 Aligned_cols=113 Identities=10% Similarity=0.095 Sum_probs=51.1
Q ss_pred CCChhHHHHHHHHchhccCCCCCC---HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCC
Q 010642 109 NQRTRDALCLFDNLNREESGCKPD---DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSK--MNLCNSLIAMYSKCGS 183 (505)
Q Consensus 109 ~g~~~~A~~~~~~m~~~~~~~~pd---~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~--~~~~~~l~~~y~~~g~ 183 (505)
.++...+...++.+... .+.+ ....-.+...+...|++++|...|+.+......+. ......|...+...|+
T Consensus 24 ~~~~~~~~~~~~~l~~~---~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKD---YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred CCCHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 55555555555555441 1111 12222233444555555555555555555431111 1223334455555555
Q ss_pred HHHHHHHHhcCCCC--ChhHHHHHHHHHHhCCChHHHHHHHHH
Q 010642 184 LGMAFEVFKGMPEK--DVVSWSAMISGLAMNGHGRDAIESFGA 224 (505)
Q Consensus 184 ~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 224 (505)
+++|...++....+ ....+......|.+.|+.++|...|+.
T Consensus 101 ~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 101 YDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555555444322 122333444455555555555555543
No 143
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.91 E-value=1.7e-05 Score=46.92 Aligned_cols=33 Identities=30% Similarity=0.558 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCC
Q 010642 97 VAWNVLISCYIRNQRTRDALCLFDNLNREESGCKP 131 (505)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p 131 (505)
.+||.+|.+|++.|+++.|.++|+.|++ .|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~--~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKE--QGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCC
Confidence 5677777777777777777777777777 67766
No 144
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.006 Score=53.26 Aligned_cols=116 Identities=12% Similarity=0.077 Sum_probs=59.7
Q ss_pred HCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 010642 108 RNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMA 187 (505)
Q Consensus 108 ~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A 187 (505)
..|++++|+++++.+.. . -+.|.+++.--+.+.-..|.--+|.+-+....+. +..|...|.-|.+.|...|++++|
T Consensus 98 a~~~~~~A~e~y~~lL~--d-dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA 173 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLE--D-DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKA 173 (289)
T ss_pred HhhchhhHHHHHHHHhc--c-CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHH
Confidence 35556666666666555 2 2444455554444444444444444444444443 355666666666666666666666
Q ss_pred HHHHhcCC--CC-ChhHHHHHHHHHHhCC---ChHHHHHHHHHHHH
Q 010642 188 FEVFKGMP--EK-DVVSWSAMISGLAMNG---HGRDAIESFGAMQR 227 (505)
Q Consensus 188 ~~~~~~m~--~~-~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~ 227 (505)
.-.++++. +| ++..+..+...+.-.| +.+-|.++|.+..+
T Consensus 174 ~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 174 AFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 66666553 33 3333344444333322 34456666666665
No 145
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.85 E-value=2.1e-05 Score=45.34 Aligned_cols=31 Identities=32% Similarity=0.639 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 010642 200 VSWSAMISGLAMNGHGRDAIESFGAMQRAGV 230 (505)
Q Consensus 200 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 230 (505)
++||+++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677778888888888888888887777653
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.84 E-value=0.00058 Score=56.37 Aligned_cols=114 Identities=14% Similarity=0.112 Sum_probs=58.5
Q ss_pred cCCHHHHHHHHHHHhhhcCCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCH----HHHHHHHHHHHhcCchhH
Q 010642 247 CGLVDEGMMFLDRMSKDFGILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDS----TIWRTLLGACRIHKHVTL 320 (505)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~ 320 (505)
.++...+...++.+.+.++-.| .....-.+...+...|++++|...|+.. ...|+. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5555555555666655321111 1122223345555666666666666655 212322 123334455666666666
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHH
Q 010642 321 GERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREF 361 (505)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 361 (505)
|...++.. ...+..+..+..+.++|.+.|++++|...|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666442 11222334555667777777777777776654
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.83 E-value=0.00025 Score=53.10 Aligned_cols=92 Identities=21% Similarity=0.188 Sum_probs=71.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCC
Q 010642 273 YGCVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVG 350 (505)
Q Consensus 273 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 350 (505)
+..+...+...|++++|.+.+++. ...|+ ...+..+...+...++++.|.+.++...+..|.+...+..+...+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777788888888888776 33443 3566777777888888888988888888888877778888888888888
Q ss_pred CHHHHHHHHHHHHh
Q 010642 351 DWEKVKELREFMNE 364 (505)
Q Consensus 351 ~~~~a~~~~~~m~~ 364 (505)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99888888877654
No 148
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.0021 Score=55.97 Aligned_cols=182 Identities=10% Similarity=0.099 Sum_probs=121.2
Q ss_pred cCCHHHHHHHHhcCCC--------CCh-hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCCH
Q 010642 181 CGSLGMAFEVFKGMPE--------KDV-VSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV-LSACSHCGLV 250 (505)
Q Consensus 181 ~g~~~~A~~~~~~m~~--------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~ 250 (505)
..+.++..+++..+.. ++. ..|..++-+....|+.+.|...++++... + |.+.-...+ ..-+-..|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 3567777777776642 122 23445555666778888888888887765 2 444322221 1123446788
Q ss_pred HHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010642 251 DEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM--GVKPDSTIWRTLLGACRIHKHVTLGERVIEHL 328 (505)
Q Consensus 251 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 328 (505)
++|+++++.+.++ .+.|..++-.-+-..-..|+.-+|++-+... .+..|...|.-+...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 8888888888864 3445566666666666677777777766665 45557888888888888888888888888888
Q ss_pred HHhcCCCCchHHHHHHHHHhCC---CHHHHHHHHHHHHhCC
Q 010642 329 IELKAQESGDYVLLLNLYSSVG---DWEKVKELREFMNEKG 366 (505)
Q Consensus 329 ~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~ 366 (505)
.-..|.++..+..+...+.-.| +.+-+.++|.+..+..
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 8888888777777777765554 4556677776666544
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.81 E-value=0.00046 Score=54.62 Aligned_cols=98 Identities=8% Similarity=-0.011 Sum_probs=45.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhhcCCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC----HHHHHHHHHHH
Q 010642 239 GVLSACSHCGLVDEGMMFLDRMSKDFGILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD----STIWRTLLGAC 312 (505)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~ 312 (505)
.+...+...|++++|...|..+...+.-.+ ....+..+...+.+.|++++|.+.++.+ ...|+ ..++..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 334444445555555555555543211101 0123333444555555555555555544 11222 23344444555
Q ss_pred HhcCchhHHHHHHHHHHHhcCCCC
Q 010642 313 RIHKHVTLGERVIEHLIELKAQES 336 (505)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~~~~ 336 (505)
...|+.+.|...++++.+..|+++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcCCh
Confidence 555555555555555555555543
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.78 E-value=5.3e-05 Score=55.92 Aligned_cols=78 Identities=14% Similarity=0.185 Sum_probs=49.1
Q ss_pred cCChHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHH
Q 010642 283 AGLLDQAYQLITSM-GVKP---DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKEL 358 (505)
Q Consensus 283 ~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 358 (505)
.|+++.|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.++.+......++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45666666666666 2222 344555566777777777777777777 555555555555667777777777777777
Q ss_pred HHH
Q 010642 359 REF 361 (505)
Q Consensus 359 ~~~ 361 (505)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 151
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.74 E-value=0.051 Score=52.80 Aligned_cols=157 Identities=10% Similarity=0.044 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHH
Q 010642 201 SWSAMISGLAMNGHGRDAIESFGAMQRAGVFP-DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDL 279 (505)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 279 (505)
+|-..+..--+..-...|..+|.+..+.+..+ +.+..++++..++ .++.+-|.++|+.-.+.+|.. +.--...++-
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~--p~yv~~Yldf 444 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDS--PEYVLKYLDF 444 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCC--hHHHHHHHHH
Confidence 45556666666666777888888888877777 5556666666554 467778888888777654433 3344567777
Q ss_pred HHhcCChHHHHHHHHHC---CCCCC--HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCC----CCchHHHHHHHHHhCC
Q 010642 280 LGRAGLLDQAYQLITSM---GVKPD--STIWRTLLGACRIHKHVTLGERVIEHLIELKAQ----ESGDYVLLLNLYSSVG 350 (505)
Q Consensus 280 ~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g 350 (505)
+...|+-..|..+|++. ++.|| ...|..+|.--..-|+...+.++-++....-|. ....-..+++.|.-.+
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d 524 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILD 524 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcc
Confidence 77788888888888877 23443 457888888777888888887777776554431 1123445566666665
Q ss_pred CHHHHHHHHH
Q 010642 351 DWEKVKELRE 360 (505)
Q Consensus 351 ~~~~a~~~~~ 360 (505)
.+..-..-++
T Consensus 525 ~~~c~~~elk 534 (656)
T KOG1914|consen 525 LYPCSLDELK 534 (656)
T ss_pred cccccHHHHH
Confidence 5544433333
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.72 E-value=0.0006 Score=53.98 Aligned_cols=96 Identities=16% Similarity=0.067 Sum_probs=80.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHC-CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC---CchHHHH
Q 010642 271 HHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD----STIWRTLLGACRIHKHVTLGERVIEHLIELKAQE---SGDYVLL 342 (505)
Q Consensus 271 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l 342 (505)
.++..++..+.+.|++++|.+.|+.+ ...|+ ...+..+..++...|+++.|...++.+....|.+ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35667788899999999999999988 33343 3466678889999999999999999999988764 4568889
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 343 LNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 343 ~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
..++.+.|++++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998764
No 153
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.62 E-value=0.00031 Score=49.47 Aligned_cols=64 Identities=22% Similarity=0.204 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCC-CHHHHHHHHHHHHh
Q 010642 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVG-DWEKVKELREFMNE 364 (505)
Q Consensus 301 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 364 (505)
++.+|..+...+...|++++|+..|++.++.+|.++..|..+..+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788888999999999999999999999999999999999999999999 79999999988764
No 154
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.62 E-value=6.4e-05 Score=43.28 Aligned_cols=28 Identities=36% Similarity=0.584 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHchh
Q 010642 97 VAWNVLISCYIRNQRTRDALCLFDNLNR 124 (505)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 124 (505)
++||+||++|++.|++++|.++|++|.+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 3577777777777777777777777766
No 155
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.58 E-value=0.0026 Score=58.86 Aligned_cols=133 Identities=11% Similarity=0.094 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHH
Q 010642 200 VSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSA-CSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVD 278 (505)
Q Consensus 200 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 278 (505)
.+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467788888888888999999999998543 2233344433333 33357777899999999985 4456778899999
Q ss_pred HHHhcCChHHHHHHHHHC-CCCCCH----HHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 010642 279 LLGRAGLLDQAYQLITSM-GVKPDS----TIWRTLLGACRIHKHVTLGERVIEHLIELKAQE 335 (505)
Q Consensus 279 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 335 (505)
.+.+.|+.+.|..+|++. ..-|.. ..|...+.--.+.|+.+...++.+++.+.-|.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999998 323333 499999999999999999999999999887763
No 156
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.56 E-value=0.043 Score=56.45 Aligned_cols=122 Identities=17% Similarity=0.258 Sum_probs=64.4
Q ss_pred hCCCHHHHHHHHhcCCCC-ChhHHHHHHHH--HHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHH
Q 010642 77 TFEKSFEACKLFDEIPQR-DTVAWNVLISC--YIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGE 153 (505)
Q Consensus 77 ~~g~~~~A~~~~~~~~~~-~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~ 153 (505)
..+++..|.+-.+.+..+ .-..|...+.+ ..+.|+.++|..+++.... .+.. |..|...+-..|...++.+++.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~--~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYG--LKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhcc--CCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 345556666555555431 11223333333 3456666666666665533 2222 5566666666666666666666
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH----HHHHHHhcCCCCChhHHH
Q 010642 154 KIHRYISEHGYGSKMNLCNSLIAMYSKCGSLG----MAFEVFKGMPEKDVVSWS 203 (505)
Q Consensus 154 ~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~----~A~~~~~~m~~~~~~~~~ 203 (505)
.+|+++.+.. |+......+..+|.|-+++. .|.++++..++.--.-|+
T Consensus 98 ~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs 149 (932)
T KOG2053|consen 98 HLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS 149 (932)
T ss_pred HHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH
Confidence 6666666542 33555555666666665543 355555555444444444
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.56 E-value=0.00085 Score=50.07 Aligned_cols=91 Identities=16% Similarity=0.066 Sum_probs=46.1
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 010642 99 WNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMY 178 (505)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y 178 (505)
|..+...+...|++++|+..|++..+ . .+.+...+..+...+...++++.|.+.+....+.. +.+..++..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--L-DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--c-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHH
Confidence 44455555556666666666665544 1 12222444445555555555666666555555543 22334444455555
Q ss_pred HhcCCHHHHHHHHhc
Q 010642 179 SKCGSLGMAFEVFKG 193 (505)
Q Consensus 179 ~~~g~~~~A~~~~~~ 193 (505)
...|++++|...|..
T Consensus 79 ~~~~~~~~a~~~~~~ 93 (100)
T cd00189 79 YKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHhHHHHHHHHHH
Confidence 555555555554443
No 158
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.51 E-value=0.0031 Score=60.90 Aligned_cols=122 Identities=11% Similarity=0.035 Sum_probs=99.1
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCC-cCCcchHHHHHHHHHhcCChHHHHHHHHHC---CCCCCHH
Q 010642 228 AGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGI-LPNIHHYGCVVDLLGRAGLLDQAYQLITSM---GVKPDST 303 (505)
Q Consensus 228 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~ 303 (505)
.+.+.+...+..++..+....+++.+..++.+.+..... ..-..+..++|+.|.+.|..++++++++.= |+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 345557788888999999999999999999888764211 123455679999999999999999999875 9999999
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHhc-CCCCchHHHHHHHHHhC
Q 010642 304 IWRTLLGACRIHKHVTLGERVIEHLIELK-AQESGDYVLLLNLYSSV 349 (505)
Q Consensus 304 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 349 (505)
+++.|+..+.+.|++..|.+++..|...+ .+++.++..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999877665 66677777666666555
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.48 E-value=0.00096 Score=64.07 Aligned_cols=104 Identities=11% Similarity=-0.038 Sum_probs=83.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCc
Q 010642 240 VLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKH 317 (505)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 317 (505)
-.......|++++|+..|++.++. .+.+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..++...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 345567789999999999999863 3345667888888999999999999999988 5566 46678888889999999
Q ss_pred hhHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010642 318 VTLGERVIEHLIELKAQESGDYVLLLNL 345 (505)
Q Consensus 318 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 345 (505)
+++|...+++++++.|.++.....+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999887665554333
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.44 E-value=0.002 Score=54.99 Aligned_cols=79 Identities=13% Similarity=0.049 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHC-CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 010642 273 YGCVVDLLGRAGLLDQAYQLITSM-GVKPD----STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYS 347 (505)
Q Consensus 273 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 347 (505)
+..+...+...|++++|...|++. ...|+ ...+..+...+...|+++.|...+++..+..|.+...+..+..+|.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 344444455555555555555544 11121 2355555666666666666666666666666666666666666666
Q ss_pred hCCC
Q 010642 348 SVGD 351 (505)
Q Consensus 348 ~~g~ 351 (505)
..|+
T Consensus 118 ~~g~ 121 (172)
T PRK02603 118 KRGE 121 (172)
T ss_pred HcCC
Confidence 5554
No 161
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.44 E-value=0.00052 Score=47.65 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=42.6
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 308 LLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 308 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
+...+...|++++|...++.+++..|.++..+..+..++...|++++|...+++..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566777888888888888887777777777888888888888888887777754
No 162
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.42 E-value=0.0039 Score=53.39 Aligned_cols=107 Identities=21% Similarity=0.281 Sum_probs=77.0
Q ss_pred CCCCHHHHHHHHHHHHh-----ccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHH
Q 010642 129 CKPDDVTCLLVLQACAH-----LGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWS 203 (505)
Q Consensus 129 ~~pd~~t~~~ll~~~~~-----~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~ 203 (505)
-..|..+|..++..+.+ .|..+-....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ----------- 109 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ----------- 109 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH-----------
Confidence 34566777777777754 46778888888999999999999999999998765 3322 111111
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 010642 204 AMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLV 250 (505)
Q Consensus 204 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 250 (505)
++-.- -..+-+-|++++++|...|+.||..|+..+++.+++.+..
T Consensus 110 ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 110 AEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 11111 1234567899999999999999999999999999776643
No 163
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0053 Score=57.30 Aligned_cols=155 Identities=10% Similarity=0.045 Sum_probs=109.4
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHHhhhcCCcCCcchHHH---H-----
Q 010642 207 SGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLS--ACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGC---V----- 276 (505)
Q Consensus 207 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~---l----- 276 (505)
.++...|++++|.+.--..++.... + .+...+. ++-..++.+.|...|++.+. ..|+...--. +
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~-n--~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDAT-N--AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccc-h--hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHH
Confidence 4566788888888876666553211 1 2222222 34456788888888887763 3454322111 1
Q ss_pred -----HHHHHhcCChHHHHHHHHHC-CCCC-----CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010642 277 -----VDLLGRAGLLDQAYQLITSM-GVKP-----DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNL 345 (505)
Q Consensus 277 -----i~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 345 (505)
..-..+.|++.+|.+.+.+. ++.| +...|.....+..+.|+..+|+.-.++..++++.-...|..-.++
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 12345789999999999887 5444 455666666778899999999999999999998777788888889
Q ss_pred HHhCCCHHHHHHHHHHHHhCCC
Q 010642 346 YSSVGDWEKVKELREFMNEKGL 367 (505)
Q Consensus 346 ~~~~g~~~~a~~~~~~m~~~~~ 367 (505)
+...++|++|.+-+++..+..-
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999998876543
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.41 E-value=0.0027 Score=60.98 Aligned_cols=103 Identities=8% Similarity=-0.029 Sum_probs=82.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcC
Q 010642 205 MISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAG 284 (505)
Q Consensus 205 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 284 (505)
....+...|++++|++.|++..+.... +...|..+..++...|++++|+..++++... .+.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 345677889999999999999985332 5567888888999999999999999999863 2335678888999999999
Q ss_pred ChHHHHHHHHHC-CCCCCHHHHHHHHH
Q 010642 285 LLDQAYQLITSM-GVKPDSTIWRTLLG 310 (505)
Q Consensus 285 ~~~~A~~~~~~~-~~~p~~~~~~~ll~ 310 (505)
++++|...|++. .+.|+......++.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999998 66676555544443
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.39 E-value=0.002 Score=54.68 Aligned_cols=93 Identities=13% Similarity=-0.073 Sum_probs=69.0
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHH
Q 010642 270 IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD----STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLN 344 (505)
Q Consensus 270 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 344 (505)
...|..+...+...|++++|...|++. .+.|+ ..+|..+...+...|++++|...+++..+..|.....+..+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566666777778888888888776 33332 3467778888888899999999999988888877777777777
Q ss_pred HHH-------hCCCHHHHHHHHHHH
Q 010642 345 LYS-------SVGDWEKVKELREFM 362 (505)
Q Consensus 345 ~~~-------~~g~~~~a~~~~~~m 362 (505)
.|. ..|+++.|...+++-
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 777 788888776666544
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.38 E-value=0.0046 Score=52.74 Aligned_cols=91 Identities=12% Similarity=0.025 Sum_probs=55.6
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCC-C-HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHH
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKP-D-DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCN 172 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-d-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 172 (505)
....+..+...+...|++++|+..|++... ....+ + ...+..+...+...|++++|...+.++.+.. +.+...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALK--LEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 344566666667777777777777776654 22111 1 3456666666777777777777777776653 33455566
Q ss_pred HHHHHHHhcCCHHHHH
Q 010642 173 SLIAMYSKCGSLGMAF 188 (505)
Q Consensus 173 ~l~~~y~~~g~~~~A~ 188 (505)
.+..+|...|+...+.
T Consensus 111 ~lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 111 NIAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHHcCChHhHh
Confidence 6666666666654443
No 167
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.37 E-value=0.13 Score=48.31 Aligned_cols=101 Identities=17% Similarity=0.127 Sum_probs=47.6
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010642 176 AMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMM 255 (505)
Q Consensus 176 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 255 (505)
.-+...|+...|.++-.+..-|+..-|-..+.+|+..++|++-.++-.. .- .++-|-.++.+|.+.|...+|..
T Consensus 185 ~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~~~eA~~ 258 (319)
T PF04840_consen 185 RKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGNKKEASK 258 (319)
T ss_pred HHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCCHHHHHH
Confidence 3334445555555555555555555555555555555555544433221 01 22444455555555555555555
Q ss_pred HHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHH
Q 010642 256 FLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLI 293 (505)
Q Consensus 256 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 293 (505)
+...+. +..-+.+|.++|++.+|.+.-
T Consensus 259 yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 259 YIPKIP-----------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHhCC-----------hHHHHHHHHHCCCHHHHHHHH
Confidence 444321 123444555555555554443
No 168
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.36 E-value=0.0036 Score=47.41 Aligned_cols=81 Identities=17% Similarity=0.069 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHchhccCCC-CCCHHHHHHHHHHHHhcc--------ChHHHHHHHHHHHHcCCCCch
Q 010642 98 AWNVLISCYIRNQRTRDALCLFDNLNREESGC-KPDDVTCLLVLQACAHLG--------ALEFGEKIHRYISEHGYGSKM 168 (505)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~pd~~t~~~ll~~~~~~~--------~~~~a~~i~~~~~~~~~~~~~ 168 (505)
+-...|..+...+++.....+|+.+++ .|+ .|+..+|+.++.+.++.. .+-....+|+.|+..++.|+.
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkR--N~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~ 104 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKR--NGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPND 104 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHh--cCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcH
Confidence 344566667777999999999999999 899 899999999999887654 244567889999999999999
Q ss_pred hHHHHHHHHHHh
Q 010642 169 NLCNSLIAMYSK 180 (505)
Q Consensus 169 ~~~~~l~~~y~~ 180 (505)
.+|+.++..+.+
T Consensus 105 etYnivl~~Llk 116 (120)
T PF08579_consen 105 ETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHH
Confidence 999999887765
No 169
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.35 E-value=0.0053 Score=56.82 Aligned_cols=126 Identities=10% Similarity=0.054 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHH-HHhccChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 010642 98 AWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQA-CAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIA 176 (505)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~-~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~ 176 (505)
+|..++...-+.+..+.|..+|.+.++ .+ ..+...|...... +...++.+.|.+||+...+. ++.+...+...++
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK--DK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--CC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc--CC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 566666666666666666666666654 21 1122223322222 22245555567777766665 4556666666666
Q ss_pred HHHhcCCHHHHHHHHhcCCCC------ChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010642 177 MYSKCGSLGMAFEVFKGMPEK------DVVSWSAMISGLAMNGHGRDAIESFGAMQR 227 (505)
Q Consensus 177 ~y~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 227 (505)
.+.+.|+.+.|..+|++.... ....|...+..=.+.|+.+.+.++.+++.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666777777777777665431 223566666666666666666666666555
No 170
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.35 E-value=0.0005 Score=50.65 Aligned_cols=80 Identities=15% Similarity=0.226 Sum_probs=42.9
Q ss_pred CCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcC-CcchHHHHHHHHHhcCChHHH
Q 010642 212 NGHGRDAIESFGAMQRAGVF-PDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILP-NIHHYGCVVDLLGRAGLLDQA 289 (505)
Q Consensus 212 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 289 (505)
.|+++.|+.+|+++.+.... |+...+..+..++.+.|++++|..+++.. ...| +......+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 46666777777776654321 23334444566666677777777766662 1122 223333445666666666666
Q ss_pred HHHHHH
Q 010642 290 YQLITS 295 (505)
Q Consensus 290 ~~~~~~ 295 (505)
.+.|++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666654
No 171
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.34 E-value=0.0027 Score=61.31 Aligned_cols=120 Identities=11% Similarity=0.042 Sum_probs=96.0
Q ss_pred CCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC-C-----ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCH
Q 010642 60 GYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ-R-----DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDD 133 (505)
Q Consensus 60 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~ 133 (505)
+.+.+......+++......+++++..++-+... | -..+..++|+.|.+.|..++++.+++.=.. .|+-||.
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~--yGiF~D~ 138 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ--YGIFPDN 138 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh--cccCCCh
Confidence 3355666667777777777788888888776653 1 233456999999999999999999998888 8999999
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 010642 134 VTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKC 181 (505)
Q Consensus 134 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~ 181 (505)
+|++.++..+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999988887667777776666666655
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.34 E-value=0.0054 Score=50.08 Aligned_cols=94 Identities=10% Similarity=-0.036 Sum_probs=46.2
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCH-HHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHH
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDD-VTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNS 173 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ 173 (505)
+......+...+...|++++|..+|+.+.. +.|.. .-|..|..++-..|++++|...|..+.... +.|+..+-.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~----~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ 108 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI----YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHH
Confidence 333344444445555555555555555543 23322 233344444445555555555555555544 344445555
Q ss_pred HHHHHHhcCCHHHHHHHHhc
Q 010642 174 LIAMYSKCGSLGMAFEVFKG 193 (505)
Q Consensus 174 l~~~y~~~g~~~~A~~~~~~ 193 (505)
+..+|.+.|+.+.|++.|+.
T Consensus 109 ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKA 128 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 55555555555555555543
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.33 E-value=0.012 Score=59.28 Aligned_cols=64 Identities=19% Similarity=0.167 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 301 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
+...|..+.-.....|++++|...++++.++.| +...|..+...|...|+.++|.+.+++....
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344555554444555666677777776666666 3456666666666677777776666665443
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.32 E-value=0.0074 Score=56.08 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=20.9
Q ss_pred CHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHch
Q 010642 80 KSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLN 123 (505)
Q Consensus 80 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 123 (505)
++++|...|++ ....|-..+++++|.+.|.+..
T Consensus 30 ~~e~Aa~~y~~-----------Aa~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 30 DYEEAADLYEK-----------AANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTT-CHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-----------HHHHHHHHhccchhHHHHHHHH
Confidence 56666665543 4566777777777777776663
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.31 E-value=0.015 Score=54.06 Aligned_cols=197 Identities=11% Similarity=0.073 Sum_probs=102.3
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHc----CCCCc-hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhC
Q 010642 138 LVLQACAHLGALEFGEKIHRYISEH----GYGSK-MNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMN 212 (505)
Q Consensus 138 ~ll~~~~~~~~~~~a~~i~~~~~~~----~~~~~-~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 212 (505)
.....|-..+++++|...|....+. +-+.+ ...|.....+|.+. ++++|...| ...+..|...
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~-----------~~A~~~y~~~ 107 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECY-----------EKAIEIYREA 107 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHH-----------HHHHHHHHHC
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHH-----------HHHHHHHHhc
Confidence 3344555666777776666655432 10000 11222223333222 444444433 3344556666
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHHhhhcCCcCC----cchHHHHHHHHHhcCChH
Q 010642 213 GHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHC-GLVDEGMMFLDRMSKDFGILPN----IHHYGCVVDLLGRAGLLD 287 (505)
Q Consensus 213 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~ 287 (505)
|++..|-..+.. +...|... |++++|.+.|++...-+..... ...+..+...+.+.|+++
T Consensus 108 G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~ 172 (282)
T PF14938_consen 108 GRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYE 172 (282)
T ss_dssp T-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HH
T ss_pred CcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHH
Confidence 666665554444 44566666 7888888888877654322221 234566677788889999
Q ss_pred HHHHHHHHC---CC-----CCCHH-HHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCc-----hHHHHHHHHHh--CCC
Q 010642 288 QAYQLITSM---GV-----KPDST-IWRTLLGACRIHKHVTLGERVIEHLIELKAQESG-----DYVLLLNLYSS--VGD 351 (505)
Q Consensus 288 ~A~~~~~~~---~~-----~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~~--~g~ 351 (505)
+|.++|++. .. +.+.. .+-..+-.+...||...|.+.+++.....|.-.. ....|+.+|-. ...
T Consensus 173 ~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~ 252 (282)
T PF14938_consen 173 EAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEA 252 (282)
T ss_dssp HHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCC
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHH
Confidence 999988876 11 11222 2222333555678888999999988887753222 33356666632 234
Q ss_pred HHHHHHHHHH
Q 010642 352 WEKVKELREF 361 (505)
Q Consensus 352 ~~~a~~~~~~ 361 (505)
++++..-|+.
T Consensus 253 f~~av~~~d~ 262 (282)
T PF14938_consen 253 FTEAVAEYDS 262 (282)
T ss_dssp HHHHCHHHTT
T ss_pred HHHHHHHHcc
Confidence 5555554443
No 176
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.29 E-value=0.00051 Score=48.20 Aligned_cols=53 Identities=15% Similarity=0.241 Sum_probs=44.0
Q ss_pred HhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 313 RIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
...|++++|...++++.+..|.+...+..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788889999999988888888888888999999999999998888876654
No 177
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.29 E-value=0.15 Score=51.08 Aligned_cols=235 Identities=15% Similarity=0.145 Sum_probs=139.1
Q ss_pred CCChhhHHHHHHHHHccCCcHHHHHHHHHHHH-hCCC--------CChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChh
Q 010642 27 PTNPFACSFAIKCCMKFCSLMGGLQIHARVLR-DGYQ--------LDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTV 97 (505)
Q Consensus 27 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 97 (505)
.|.+..|..+.......-.++.|.+.|-+.-. .|++ .+.....+=+.+| -|++++|++++-.+..+|..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhhh
Confidence 46677788777766666666666665543321 1110 1111112222222 48899999999888777643
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC---HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHH
Q 010642 98 AWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD---DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSL 174 (505)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd---~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 174 (505)
|..+.+.|+|-...++++.-- +-..| ...|..+...++....+++|.+.+.+-.. ....
T Consensus 767 -----ielr~klgDwfrV~qL~r~g~----~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 767 -----IELRKKLGDWFRVYQLIRNGG----SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred -----HHHHHhhhhHHHHHHHHHccC----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 667788888888888876431 11112 35677888888888888888888765322 1235
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010642 175 IAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGM 254 (505)
Q Consensus 175 ~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 254 (505)
+.+|.+...+++-+.+-..+++. .....-|...+.+.|.-++|.+.|-+-- .| ...+.+|...+++.+|.
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~av 898 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEAV 898 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHHH
Confidence 66666666676666666666543 3344556677777777777777654321 12 23455666677776666
Q ss_pred HHHHHHhhhcCCcCCcchH--------------HHHHHHHHhcCChHHHHHHHHHC
Q 010642 255 MFLDRMSKDFGILPNIHHY--------------GCVVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 255 ~~~~~~~~~~~~~p~~~~~--------------~~li~~~~~~g~~~~A~~~~~~~ 296 (505)
++-++..- |.+.+. .--|..+.++|+.-+|-+++.+|
T Consensus 899 elaq~~~l-----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qm 949 (1189)
T KOG2041|consen 899 ELAQRFQL-----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQM 949 (1189)
T ss_pred HHHHhccc-----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHH
Confidence 65443321 111111 12345566777777777777777
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.28 E-value=0.0062 Score=51.68 Aligned_cols=81 Identities=9% Similarity=-0.095 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCC--CHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHH
Q 010642 96 TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKP--DDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNS 173 (505)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p--d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ 173 (505)
...|..+...+...|++++|+..|++... ....| ...++..+...+...|++++|...+..+.+.. +.....+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~--l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMR--LEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--ccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHH
Confidence 34556666666667777777777776654 21111 12355666666666677777777766666542 333344444
Q ss_pred HHHHHH
Q 010642 174 LIAMYS 179 (505)
Q Consensus 174 l~~~y~ 179 (505)
+...|.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 555554
No 179
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.26 E-value=0.0035 Score=47.50 Aligned_cols=79 Identities=15% Similarity=0.206 Sum_probs=60.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHHhhhcCCcCCcchH
Q 010642 203 SAMISGLAMNGHGRDAIESFGAMQRAGV-FPDDQTFTGVLSACSHCG--------LVDEGMMFLDRMSKDFGILPNIHHY 273 (505)
Q Consensus 203 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~~ 273 (505)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. ++-+...+|+.|... +++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 4455566667999999999999999999 899999999998876643 234556677777775 788888888
Q ss_pred HHHHHHHHh
Q 010642 274 GCVVDLLGR 282 (505)
Q Consensus 274 ~~li~~~~~ 282 (505)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 887776654
No 180
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.0011 Score=59.31 Aligned_cols=93 Identities=14% Similarity=0.060 Sum_probs=76.8
Q ss_pred HHhccCCHHHHHHHHHHHhhhcCCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchh
Q 010642 243 ACSHCGLVDEGMMFLDRMSKDFGILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHVT 319 (505)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~ 319 (505)
-..+.+++++|+..|.+.++ +.| |...|..=..+|.+.|.++.|.+-.+.. .+.|. ..+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 35677999999999999985 344 5566666778899999999998888777 66775 458999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCch
Q 010642 320 LGERVIEHLIELKAQESGD 338 (505)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~ 338 (505)
+|++.|++.++++|.+...
T Consensus 167 ~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESY 185 (304)
T ss_pred HHHHHHHhhhccCCCcHHH
Confidence 9999999999999998743
No 181
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.25 E-value=0.14 Score=46.24 Aligned_cols=64 Identities=9% Similarity=0.030 Sum_probs=37.5
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHH-HH---HHHHHHHHhccChHHHHHHHHHHHHc
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDV-TC---LLVLQACAHLGALEFGEKIHRYISEH 162 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~-t~---~~ll~~~~~~~~~~~a~~i~~~~~~~ 162 (505)
+...+-.....+.+.|++++|.+.|+++.. ..|+.. +- -.+..++-+.++++.|...+++.++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~----~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDN----RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344444455556667777777777777755 233321 11 23445566677777777777776665
No 182
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.25 E-value=0.051 Score=49.06 Aligned_cols=173 Identities=7% Similarity=-0.000 Sum_probs=97.0
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCh---hH---HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-
Q 010642 174 LIAMYSKCGSLGMAFEVFKGMPEKDV---VS---WSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSH- 246 (505)
Q Consensus 174 l~~~y~~~g~~~~A~~~~~~m~~~~~---~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~- 246 (505)
....+.+.|++++|.+.|+.+....+ .. .-.++.+|.+.+++++|...|++..+.-..-....+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 44445566777777777776653211 11 123445667777777777777777664222112233333333221
Q ss_pred -c---------------CC---HHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHH
Q 010642 247 -C---------------GL---VDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRT 307 (505)
Q Consensus 247 -~---------------g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 307 (505)
. .+ ...|...|+.+++. |-...-..+|...+..+.-..-..- -.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~~~la~~e-~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLKDRLAKYE-LS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHHHHHHHHH-HH
Confidence 1 01 12344444444443 2222233444443333310000011 13
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHhcCCCCc---hHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 308 LLGACRIHKHVTLGERVIEHLIELKAQESG---DYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 308 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
+..-|.+.|.+.-|..-++.+++.-|..+. ....++.+|.+.|..++|..+...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 345578889999999999999998876654 56678899999999999998876654
No 183
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0073 Score=54.44 Aligned_cols=105 Identities=10% Similarity=0.053 Sum_probs=85.5
Q ss_pred cCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHH---hcCchhHHHHHHHHHHHhcCCCCchHHH
Q 010642 267 LPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACR---IHKHVTLGERVIEHLIELKAQESGDYVL 341 (505)
Q Consensus 267 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 341 (505)
+-|...|-.|...|.+.|+.+.|..-|.+. .+.| +...+..+..++. ......++..+++++++.+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 447889999999999999999999999988 3333 4555555555543 3345678999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCC
Q 010642 342 LLNLYSSVGDWEKVKELREFMNEKGLQTTP 371 (505)
Q Consensus 342 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 371 (505)
|...+...|++.+|...|+.|.+..-..+|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999987654433
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.20 E-value=0.002 Score=44.67 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=47.5
Q ss_pred HHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCC
Q 010642 276 VVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQES 336 (505)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 336 (505)
+...+.+.|++++|.+.|++. ...|+ ...|..+..++...|++++|...++++.+..|.++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677888888888888888 55564 55778888888899999999999999988888763
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.19 E-value=0.059 Score=44.95 Aligned_cols=99 Identities=14% Similarity=0.057 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CChhHHH
Q 010642 129 CKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE-----KDVVSWS 203 (505)
Q Consensus 129 ~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~-----~~~~~~~ 203 (505)
..|+...-..+..+..+.|+..+|...|++...--+..|....-.+.++....++...|...++.+-+ +.+.+.-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 34555555556666666666666666666666555555666666666666666666666666655432 1223333
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHH
Q 010642 204 AMISGLAMNGHGRDAIESFGAMQR 227 (505)
Q Consensus 204 ~li~~~~~~g~~~~A~~~~~~m~~ 227 (505)
.+...|...|++.+|..-|+....
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH
Confidence 444555666666666666666555
No 186
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.18 E-value=0.023 Score=57.28 Aligned_cols=64 Identities=11% Similarity=0.096 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC
Q 010642 235 QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD 301 (505)
Q Consensus 235 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 301 (505)
..|..+.-.....|++++|...+++... +.|+...|..+...+...|+.++|.+.+++. .+.|.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 4454444444455666666666666654 2355566666666666667777766666665 34444
No 187
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.052 Score=47.84 Aligned_cols=128 Identities=10% Similarity=0.068 Sum_probs=83.3
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCch-----hHHHH
Q 010642 99 WNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKM-----NLCNS 173 (505)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~-----~~~~~ 173 (505)
-+.++..+.-.+.+.-.+.++.+..+ ..-+-++.....+.+...+.|+.+.|...|+...+..-..+. .+...
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~--~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIK--YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHH--hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34556666667777777777777776 444556666777777777888888888888776654323333 33333
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 010642 174 LIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRA 228 (505)
Q Consensus 174 l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 228 (505)
....|.-.+++..|...|++++. .|++.-|.-.-+..-.|+..+|++.++.|.+.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34456666777778777777664 34455555444555567777888888887764
No 188
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.16 E-value=0.0036 Score=58.30 Aligned_cols=128 Identities=13% Similarity=0.090 Sum_probs=87.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHh---hhcCCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC-------CC-CCCHH
Q 010642 236 TFTGVLSACSHCGLVDEGMMFLDRMS---KDFGILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM-------GV-KPDST 303 (505)
Q Consensus 236 t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~-~p~~~ 303 (505)
.|..|...|.-.|+++.|+...+.-. +.+|... ....+..|..++.-.|+++.|.+.++.. |- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45555555666788888887665422 2334333 2346677778888888999888887765 22 22345
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHh----c--CCCCchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 304 IWRTLLGACRIHKHVTLGERVIEHLIEL----K--AQESGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 304 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
+..+|.+.|....+++.|+.++.+-+.+ + .....++.+|.++|...|..+.|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6667888888888899998888774432 2 2334578889999999999998887776554
No 189
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.16 E-value=0.0048 Score=55.33 Aligned_cols=100 Identities=15% Similarity=0.190 Sum_probs=81.2
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC-cchHHHHHHHHHhcCC
Q 010642 207 SGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN-IHHYGCVVDLLGRAGL 285 (505)
Q Consensus 207 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~ 285 (505)
.-+.+.+++.+|+..|.+.++... -|.+-|..-..+|++.|.++.|++--+..+. +.|. ...|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCc
Confidence 446788999999999999998532 2567777888899999999999998887764 4454 5688999999999999
Q ss_pred hHHHHHHHHHC-CCCCCHHHHHHHHH
Q 010642 286 LDQAYQLITSM-GVKPDSTIWRTLLG 310 (505)
Q Consensus 286 ~~~A~~~~~~~-~~~p~~~~~~~ll~ 310 (505)
+++|.+.|++. .+.|+-.+|..=+.
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 99999999988 88898777655443
No 190
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.14 E-value=0.064 Score=50.87 Aligned_cols=73 Identities=11% Similarity=0.057 Sum_probs=48.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC-------ChhHHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010642 172 NSLIAMYSKCGSLGMAFEVFKGMPEK-------DVVSWSAMISGLAM---NGHGRDAIESFGAMQRAGVFPDDQTFTGVL 241 (505)
Q Consensus 172 ~~l~~~y~~~g~~~~A~~~~~~m~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 241 (505)
-.++-.|....+++...++++.+... ....--....++.+ .|+.++|++++..+......++..||..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555688888888888888877643 11122233445556 788888888888866666667777777666
Q ss_pred HHH
Q 010642 242 SAC 244 (505)
Q Consensus 242 ~~~ 244 (505)
..|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 654
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.13 E-value=0.014 Score=45.86 Aligned_cols=87 Identities=14% Similarity=0.019 Sum_probs=42.6
Q ss_pred HHHHHHCCChhHHHHHHHHchhccCCCCCC--HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCC---chhHHHHHHHH
Q 010642 103 ISCYIRNQRTRDALCLFDNLNREESGCKPD--DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGS---KMNLCNSLIAM 177 (505)
Q Consensus 103 i~~~~~~g~~~~A~~~~~~m~~~~~~~~pd--~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~---~~~~~~~l~~~ 177 (505)
..++-..|+.++|+.+|++... .|...+ ...+..+.+.+...|++++|..+++...... |. +..+...+..+
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~--~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALA--AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH--cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHH
Confidence 4445556666666666666655 444333 2234445555556666666666666555431 11 11222222334
Q ss_pred HHhcCCHHHHHHHHh
Q 010642 178 YSKCGSLGMAFEVFK 192 (505)
Q Consensus 178 y~~~g~~~~A~~~~~ 192 (505)
+...|+.++|.+.+-
T Consensus 85 L~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 85 LYNLGRPKEALEWLL 99 (120)
T ss_pred HHHCCCHHHHHHHHH
Confidence 444455555555443
No 192
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.07 E-value=0.01 Score=48.93 Aligned_cols=114 Identities=13% Similarity=0.182 Sum_probs=72.9
Q ss_pred HhccCCHHHHHHHHHHHhhhcCCcC--CcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhHH
Q 010642 244 CSHCGLVDEGMMFLDRMSKDFGILP--NIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLG 321 (505)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 321 (505)
....++.+.+...+.++..-+.-++ +... ..-.......++.+ -..+...++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHH
Confidence 3456677777777777776432221 1111 01111222223222 133556677788899999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHH-----hCCCCCCC
Q 010642 322 ERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMN-----EKGLQTTP 371 (505)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~ 371 (505)
...++.+...+|.+...|..++.+|...|+..+|.++|+++. +.|+.|.+
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 999999999999999999999999999999999999999874 45887754
No 193
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.05 E-value=0.28 Score=45.96 Aligned_cols=276 Identities=10% Similarity=0.010 Sum_probs=181.7
Q ss_pred hcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHH--ccCCcHHHHHHHHHHHHhCCCCChhHH--HHHHHHHHhCCCHH
Q 010642 7 MSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCM--KFCSLMGGLQIHARVLRDGYQLDSQLM--TTLMDLYSTFEKSF 82 (505)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~ 82 (505)
-.|+-..|..+-.+-.+. +.-|...+..++.+-. -.|+.+.|++-|+.|+.. |..... ..|.----+.|+.+
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHH
Confidence 357777787777665532 4456677777777654 459999999999999742 222211 12222223578888
Q ss_pred HHHHHHhcCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHH--HHHHHHHHHh---ccChHHHHH
Q 010642 83 EACKLFDEIPQ--R-DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVT--CLLVLQACAH---LGALEFGEK 154 (505)
Q Consensus 83 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t--~~~ll~~~~~---~~~~~~a~~ 154 (505)
.|+..-+..-+ | -...+.+.+...+..|+|+.|+++.+.-+.. .-+.+|..- -..|+.+-+. ..+...|..
T Consensus 172 aAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~-~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 172 AARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAA-KVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH-HhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 88887776644 2 3467889999999999999999999887663 345666532 2233333221 234566666
Q ss_pred HHHHHHHcCCCCchh-HHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHH-CCC
Q 010642 155 IHRYISEHGYGSKMN-LCNSLIAMYSKCGSLGMAFEVFKGMPE--KDVVSWSAMISGLAMNGHGRDAIESFGAMQR-AGV 230 (505)
Q Consensus 155 i~~~~~~~~~~~~~~-~~~~l~~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~ 230 (505)
.-.+..+. .||.. .-..-..++.+.|+..++-.+++.+-+ |.+..+. +-.+.+.|+ .+++-++.... ..+
T Consensus 251 ~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gd--ta~dRlkRa~~L~sl 324 (531)
T COG3898 251 DALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGD--TALDRLKRAKKLESL 324 (531)
T ss_pred HHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCC--cHHHHHHHHHHHHhc
Confidence 66666654 44432 233446789999999999999998864 4444333 223344454 44444444432 225
Q ss_pred CCCH-HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHh-cCChHHHHHHHHHC
Q 010642 231 FPDD-QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGR-AGLLDQAYQLITSM 296 (505)
Q Consensus 231 ~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~ 296 (505)
+||. .....+..+-...|++..|..--+... ...|....|..|.+.-.- .|+-.++..++-+.
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 5554 566777888888999988887666665 457888888888887654 49999999999887
No 194
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.05 E-value=0.0024 Score=45.42 Aligned_cols=57 Identities=16% Similarity=0.109 Sum_probs=48.4
Q ss_pred HHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 310 GACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
..+...++++.|.++++++.+.+|.++..+.....+|.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457788888999999999988888888888888889999999999998888887554
No 195
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.24 Score=46.75 Aligned_cols=162 Identities=12% Similarity=-0.014 Sum_probs=97.9
Q ss_pred CCHHHHHHHHH-HHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhH--------
Q 010642 131 PDDVTCLLVLQ-ACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVS-------- 201 (505)
Q Consensus 131 pd~~t~~~ll~-~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~-------- 201 (505)
|...++-.+-. .+...++.++|.++-..+.+.. +.+......=..++.-.++.+.|..-|++...-|+..
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~ 244 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASM 244 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhh
Confidence 44455554433 3466788888888777777654 2222222222233445677888888888776433321
Q ss_pred -------HHHHHHHHHhCCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC-c
Q 010642 202 -------WSAMISGLAMNGHGRDAIESFGAMQRA---GVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN-I 270 (505)
Q Consensus 202 -------~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~ 270 (505)
|.-=.+-..++|++..|.+.|.+.+.. ++.|+...|........+.|+.++|+.--+...+ +.|. +
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syi 321 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYI 321 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHH
Confidence 222233456788888999988888753 3556666677777778888888888877666653 2222 1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHC
Q 010642 271 HHYGCVVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 271 ~~~~~li~~~~~~g~~~~A~~~~~~~ 296 (505)
..|..-..++.-.+++++|.+-+++.
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222223445567788888888776
No 196
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.03 E-value=0.17 Score=50.36 Aligned_cols=202 Identities=16% Similarity=0.124 Sum_probs=96.8
Q ss_pred HHHHHHHHHccCCcHHHH--HHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCC
Q 010642 33 CSFAIKCCMKFCSLMGGL--QIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQ 110 (505)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 110 (505)
++..=.+|.+.++..--+ .-++++.+.|-.|+.... ...++-.|.+.+|-++|.+ .|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~------------------~G 659 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR------------------SG 659 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH------------------cC
Confidence 333445555555544322 223445556655655432 3345556778888777654 44
Q ss_pred ChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 010642 111 RTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEV 190 (505)
Q Consensus 111 ~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~ 190 (505)
....|+++|..|+. --...-+...|..++-+.+.+.-.+. .-+..--.+...++...|+.++|..+
T Consensus 660 ~enRAlEmyTDlRM------------FD~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i 725 (1081)
T KOG1538|consen 660 HENRALEMYTDLRM------------FDYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEI 725 (1081)
T ss_pred chhhHHHHHHHHHH------------HHHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhh
Confidence 55556666555533 01122233334433333322211110 00111112334555566666666554
Q ss_pred HhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCc
Q 010642 191 FKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNI 270 (505)
Q Consensus 191 ~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 270 (505)
. ..+|-.+-++++-+++-. .+..+...+...+-+...+..|-++|..|-.
T Consensus 726 ~------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-------- 775 (1081)
T KOG1538|consen 726 C------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD-------- 775 (1081)
T ss_pred h------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc--------
Confidence 2 223333444444333322 1334444444455555666666677766643
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHC-CCCCC
Q 010642 271 HHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD 301 (505)
Q Consensus 271 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 301 (505)
...++++....+++++|..+-++. ...||
T Consensus 776 --~ksiVqlHve~~~W~eAFalAe~hPe~~~d 805 (1081)
T KOG1538|consen 776 --LKSLVQLHVETQRWDEAFALAEKHPEFKDD 805 (1081)
T ss_pred --HHHHhhheeecccchHhHhhhhhCcccccc
Confidence 134666677777777777777666 33444
No 197
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.97 E-value=0.012 Score=46.28 Aligned_cols=88 Identities=14% Similarity=0.029 Sum_probs=46.3
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCC--CChhHHHHHHHHHHhCCC
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTN--PFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQ--LDSQLMTTLMDLYSTFEK 80 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~ 80 (505)
+-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++.....-+. .+..+...+.-.+...|+
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr 90 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGR 90 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCC
Confidence 3345666677777776666664433 234555556666666666666666666554211 011222222233445566
Q ss_pred HHHHHHHHhcCC
Q 010642 81 SFEACKLFDEIP 92 (505)
Q Consensus 81 ~~~A~~~~~~~~ 92 (505)
.++|.+.+-...
T Consensus 91 ~~eAl~~~l~~l 102 (120)
T PF12688_consen 91 PKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHHHHH
Confidence 666666554433
No 198
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.96 E-value=0.089 Score=43.92 Aligned_cols=126 Identities=16% Similarity=0.038 Sum_probs=85.5
Q ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC----CChhHHHHHHHHHHHCCChhHHHHHHHHchhc-cCCCCCCHHHH
Q 010642 62 QLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ----RDTVAWNVLISCYIRNQRTRDALCLFDNLNRE-ESGCKPDDVTC 136 (505)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~pd~~t~ 136 (505)
.|++.-.-.|.....+.|+..+|...|++... .|....-.+..+....+++..|..+++++-+- ..+-.| .+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p--d~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP--DGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC--Cch
Confidence 46666666777778888888888888877654 46666777777777788888888888777541 011223 344
Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 010642 137 LLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVF 191 (505)
Q Consensus 137 ~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~ 191 (505)
..+.+.+...|....|+.-|+.+... -|+...-.-...++.+.|+.++|..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 55667778888888888888888876 344444444556677778776665443
No 199
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.96 E-value=0.0077 Score=56.18 Aligned_cols=257 Identities=13% Similarity=0.022 Sum_probs=155.8
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHccCCcHHHHHHHHHHH--H--hCCC-CChhHHHHHHHHH
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTNP----FACSFAIKCCMKFCSLMGGLQIHARVL--R--DGYQ-LDSQLMTTLMDLY 75 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~--~--~~~~-~~~~~~~~li~~~ 75 (505)
+++.|+.+..+.+|+..++.|.. |. ..|..+..+|.-.++++.|++.|..=+ . .|-+ -.......|.+.+
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 57899999999999999998854 43 346666778888899999998876422 1 1110 1122333444555
Q ss_pred HhCCCHHHHHHHHhcCCC---------CChhHHHHHHHHHHHCCCh--------------------hHHHHHHHHchhcc
Q 010642 76 STFEKSFEACKLFDEIPQ---------RDTVAWNVLISCYIRNQRT--------------------RDALCLFDNLNREE 126 (505)
Q Consensus 76 ~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~~~~ 126 (505)
--.|.+++|...-.+-.. ....++..+...|...|+. +.|.++|.+-.+..
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 556777776654332211 1234566677777665542 22333333221100
Q ss_pred --CCC-CCCHHHHHHHHHHHHhccChHHHHHHHHHHHH----cCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---
Q 010642 127 --SGC-KPDDVTCLLVLQACAHLGALEFGEKIHRYISE----HGY-GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP--- 195 (505)
Q Consensus 127 --~~~-~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~----~~~-~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~--- 195 (505)
.|- -.-...|..+.+.|--.|+++.|...|+.-+. .|- ......+..|.++|.-.|+++.|.+.|+...
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 000 01112344455555556788988887765432 231 1234567788899999999999998887542
Q ss_pred ----CCCh--hHHHHHHHHHHhCCChHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 010642 196 ----EKDV--VSWSAMISGLAMNGHGRDAIESFGAMQR----A-GVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 196 ----~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (505)
.+.+ .+.-+|.++|.-...+++|+.++.+-.. . ...-....+.+|..++...|..++|..+.+...+
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3332 3455677778777888888887765331 1 1122346788888899999999998877665544
No 200
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.88 E-value=0.0089 Score=51.27 Aligned_cols=95 Identities=18% Similarity=0.345 Sum_probs=60.8
Q ss_pred HHHhcC--CCCChhHHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-------------
Q 010642 189 EVFKGM--PEKDVVSWSAMISGLAMN-----GHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCG------------- 248 (505)
Q Consensus 189 ~~~~~m--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g------------- 248 (505)
..|+.. ..++..+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||..+=+..
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 444444 456677777777777643 566667777888888999999999999998765421
Q ss_pred ---CHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcC
Q 010642 249 ---LVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAG 284 (505)
Q Consensus 249 ---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 284 (505)
+-+-|++++++|... |+-||..++..+++.+++.+
T Consensus 115 yp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred CcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhcccc
Confidence 224455555555543 55555555555555554443
No 201
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.85 E-value=0.2 Score=50.26 Aligned_cols=250 Identities=12% Similarity=0.103 Sum_probs=148.3
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHH-------HHHHHhccChHHHH
Q 010642 81 SFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLV-------LQACAHLGALEFGE 153 (505)
Q Consensus 81 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~l-------l~~~~~~~~~~~a~ 153 (505)
+++|.+..+.- |.+..|..|.......-.++.|...|-+...- .|++.-.. +..+ ...-+--|.+++|+
T Consensus 679 ledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkr-l~~i~s~~~q~aei~~~~g~feeae 754 (1189)
T KOG2041|consen 679 LEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKR-LRTIHSKEQQRAEISAFYGEFEEAE 754 (1189)
T ss_pred hHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHH-hhhhhhHHHHhHhHhhhhcchhHhh
Confidence 55555555532 45567777777766666777777777665331 23321100 0011 11112346778888
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 010642 154 KIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEK-----DVVSWSAMISGLAMNGHGRDAIESFGAMQRA 228 (505)
Q Consensus 154 ~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 228 (505)
+++-.+-+.+ ..+.++.+.|++-...++++.-... -..+|+.+...++....+++|.+.|..-..
T Consensus 755 k~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~- 824 (1189)
T KOG2041|consen 755 KLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD- 824 (1189)
T ss_pred hhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence 7776665543 3466777888888888877754322 234688888888877778888877765331
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHH
Q 010642 229 GVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTL 308 (505)
Q Consensus 229 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 308 (505)
....+.++.+..++++-+.+-..+ +-+....-.+.+++.+.|.-++|.+.+-+-+. | .+.
T Consensus 825 --------~e~~~ecly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-p-----kaA 884 (1189)
T KOG2041|consen 825 --------TENQIECLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL-P-----KAA 884 (1189)
T ss_pred --------hHhHHHHHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhccC-c-----HHH
Confidence 123455666666665544444433 33556666788888888888888887776642 2 234
Q ss_pred HHHHHhcCchhHHHHHHHHHHHhcCC-----------CCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 309 LGACRIHKHVTLGERVIEHLIELKAQ-----------ESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 309 l~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
+..|....++.+|.++.++..-.... ......--|..+.++|+.-+|.+++.+|.+
T Consensus 885 v~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 885 VHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 56677777777777666542110000 001123346677888888888888888754
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.85 E-value=0.012 Score=53.62 Aligned_cols=84 Identities=12% Similarity=-0.004 Sum_probs=41.9
Q ss_pred HhcCChHHHHHHHHHC-CCCCCH----HHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCC---chHHHHHHHHHhCCCH
Q 010642 281 GRAGLLDQAYQLITSM-GVKPDS----TIWRTLLGACRIHKHVTLGERVIEHLIELKAQES---GDYVLLLNLYSSVGDW 352 (505)
Q Consensus 281 ~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~ 352 (505)
.+.|++++|...|+.. ...|+. ..+.-+..++...|+++.|...|+.+.+..|.++ ..+..++..|...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 3345555555554444 222221 2333444555555666666666666655554432 2333445555556666
Q ss_pred HHHHHHHHHHHh
Q 010642 353 EKVKELREFMNE 364 (505)
Q Consensus 353 ~~a~~~~~~m~~ 364 (505)
++|.++++.+.+
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 666666655544
No 203
>PRK15331 chaperone protein SicA; Provisional
Probab=96.83 E-value=0.012 Score=48.37 Aligned_cols=88 Identities=14% Similarity=0.077 Sum_probs=74.9
Q ss_pred HHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHH
Q 010642 277 VDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEK 354 (505)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 354 (505)
.--+...|++++|..+|+-+ -..| +..-|..|..++-..++++.|...+.....+++.++..+......|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 34456789999999999887 2222 555677888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 010642 355 VKELREFMNE 364 (505)
Q Consensus 355 a~~~~~~m~~ 364 (505)
|...|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999988776
No 204
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.83 E-value=0.0036 Score=43.75 Aligned_cols=48 Identities=19% Similarity=0.189 Sum_probs=20.1
Q ss_pred cCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC
Q 010642 247 CGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 296 (505)
.|++++|..+|+.+... .+-+...+..+..+|.+.|++++|.++++++
T Consensus 4 ~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp TTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444444444432 1113333334444444444444444444444
No 205
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.82 E-value=0.28 Score=42.97 Aligned_cols=179 Identities=11% Similarity=0.060 Sum_probs=75.3
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCch---hHHHHHH
Q 010642 99 WNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKM---NLCNSLI 175 (505)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~---~~~~~l~ 175 (505)
+-.....+...|++.+|...|+.+...-.+-+--....-.++.++-+.|+++.|...++..++.- |.+. .++-.+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-P~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-PNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhhHHHHHH
Confidence 33344555666667777777766655211111112334445556666666666666666665542 1111 1111111
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCC-------hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 010642 176 AMYSKCGSLGMAFEVFKGMPEKD-------VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCG 248 (505)
Q Consensus 176 ~~y~~~g~~~~A~~~~~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 248 (505)
.++.+. .. ..+ ...+| ...+..++.-|-......+|...+..+.+. =...-..+..-|.+.|
T Consensus 87 ~~~~~~--~~---~~~--~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 87 LSYYKQ--IP---GIL--RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRG 155 (203)
T ss_dssp HHHHHH--HH---HHH---TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT
T ss_pred HHHHHh--Cc---cch--hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcc
Confidence 111111 00 000 11111 113344444444445555554444443321 0001122445566666
Q ss_pred CHHHHHHHHHHHhhhcCCcCC-cchHHHHHHHHHhcCChHHH
Q 010642 249 LVDEGMMFLDRMSKDFGILPN-IHHYGCVVDLLGRAGLLDQA 289 (505)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 289 (505)
.+..|..-++.+.+++.-.+. ......++.+|.+.|..+.|
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 666666666666665322221 12334555566666655533
No 206
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.78 E-value=0.0046 Score=43.37 Aligned_cols=64 Identities=11% Similarity=0.081 Sum_probs=47.9
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcC-chhHHHHHHHHHHHhcC
Q 010642 270 IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHK-HVTLGERVIEHLIELKA 333 (505)
Q Consensus 270 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~ 333 (505)
...|..+...+.+.|++++|+..|++. .+.|+ ...|..+..++...| ++++|++.+++.++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 445667777777888888888888776 44454 557777778888888 78888888888887765
No 207
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.78 E-value=0.48 Score=44.49 Aligned_cols=305 Identities=13% Similarity=0.030 Sum_probs=191.8
Q ss_pred chHHHHHHHHHHhCCCCCChhhHHHHHHHH--HccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHH--hCCCHHHHHH
Q 010642 11 PEEGFYLFEKMRQKRIPTNPFACSFAIKCC--MKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYS--TFEKSFEACK 86 (505)
Q Consensus 11 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~ 86 (505)
+..+...|..-... ..|..|-.++ +..||-..|+++-.+..+. +..|....-.|+.+-. -.|+.++|.+
T Consensus 69 P~t~~Ryfr~rKRd------rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~ 141 (531)
T COG3898 69 PYTARRYFRERKRD------RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARK 141 (531)
T ss_pred cHHHHHHHHHHHhh------hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHH
Confidence 34455566555432 2355554444 3558888888877665432 3445555555555433 3699999999
Q ss_pred HHhcCCC-CC--hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC-HHHHHHHHHHHHhccChHHHHHHHHHHHHc
Q 010642 87 LFDEIPQ-RD--TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD-DVTCLLVLQACAHLGALEFGEKIHRYISEH 162 (505)
Q Consensus 87 ~~~~~~~-~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 162 (505)
-|+.|.. |. ..-...|.-.--+.|..+.|.+.-...-. .-|. .......+...+..|+++.|.++.+.-.+.
T Consensus 142 kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~----~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 142 KFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAE----KAPQLPWAARATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHh----hccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 9999986 22 12233344445678999999888877743 4454 467788899999999999999999877654
Q ss_pred C-CCCchhH--HHHHHHHHH---hcCCHHHHHHHHhcCC--CCChhHH-HHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 010642 163 G-YGSKMNL--CNSLIAMYS---KCGSLGMAFEVFKGMP--EKDVVSW-SAMISGLAMNGHGRDAIESFGAMQRAGVFPD 233 (505)
Q Consensus 163 ~-~~~~~~~--~~~l~~~y~---~~g~~~~A~~~~~~m~--~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 233 (505)
. +.++..- -..|+.+-. -..+...|...-.+.. .||.+.- -.-..++.+.|+..++-.+++.+=+....|+
T Consensus 218 ~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ 297 (531)
T COG3898 218 KVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD 297 (531)
T ss_pred HhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH
Confidence 3 2333321 222332221 1224555555444332 4555433 2334678999999999999999988766666
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC-cchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 010642 234 DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN-IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDSTIWRTLLGA 311 (505)
Q Consensus 234 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~ 311 (505)
.. .+....+.|+.. ..-+++..+--.++|| ..+-..+..+-...|++..|..--+.. ...|....|..|...
T Consensus 298 ia----~lY~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdI 371 (531)
T COG3898 298 IA----LLYVRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADI 371 (531)
T ss_pred HH----HHHHHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHH
Confidence 42 333445666542 2223333222234454 556667778888899998887766665 567888888777766
Q ss_pred HH-hcCchhHHHHHHHHHHHhc
Q 010642 312 CR-IHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 312 ~~-~~g~~~~a~~~~~~~~~~~ 332 (505)
-. ..|+-.++.+.+.+..+--
T Consensus 372 eeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 372 EEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HhhccCchHHHHHHHHHHhcCC
Confidence 54 4599999998888877643
No 208
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.77 Score=46.79 Aligned_cols=336 Identities=12% Similarity=0.097 Sum_probs=172.9
Q ss_pred cchhcCCchHHHHHHHHHH--------hCCCCCChhhHHH-----HHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHH
Q 010642 4 AYSMSSSPEEGFYLFEKMR--------QKRIPTNPFACSF-----AIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTT 70 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 70 (505)
++.+.-++++-+.+-+.++ ..|++.+..-|.. +++-+...+.+..|.|+-..+-..- .....++..
T Consensus 398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~-~~~~~Vl~~ 476 (829)
T KOG2280|consen 398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE-SQGDRVLLE 476 (829)
T ss_pred cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc-ccccHHHHH
Confidence 3445556666555555443 3466666555554 4555666788888888876653211 112577777
Q ss_pred HHHHHHhCC---CHHHHHHHHhcCCC--CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCC----CCHHHHHHHHH
Q 010642 71 LMDLYSTFE---KSFEACKLFDEIPQ--RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCK----PDDVTCLLVLQ 141 (505)
Q Consensus 71 li~~~~~~g---~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----pd~~t~~~ll~ 141 (505)
...-+.+.. +-+.+.++=+++.. .+-++|..+.+-....|+++-|..+++.=.. .+.. .+..-+...+.
T Consensus 477 Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~--~~~qV~lLL~m~~~~~AL~ 554 (829)
T KOG2280|consen 477 WARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPR--SGEQVPLLLKMKDSSLALK 554 (829)
T ss_pred HHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCC--ccchhHHHhccchHHHHHH
Confidence 777777663 34445555556655 4667888888888899999999888765433 1111 12223455566
Q ss_pred HHHhccChHHHHHHHHHHHHc-----------CCCCchhHHHHHHH---------HHHhcCCHHHHHHHHh--cCC----
Q 010642 142 ACAHLGALEFGEKIHRYISEH-----------GYGSKMNLCNSLIA---------MYSKCGSLGMAFEVFK--GMP---- 195 (505)
Q Consensus 142 ~~~~~~~~~~a~~i~~~~~~~-----------~~~~~~~~~~~l~~---------~y~~~g~~~~A~~~~~--~m~---- 195 (505)
-+...|+.+...++.-.+.+. ..|.....|.-++. .| ..++-..+...|. ...
T Consensus 555 kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y-~q~dn~~~~a~~~~q~~~~~~~ 633 (829)
T KOG2280|consen 555 KAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFY-NQDDNHQALASFHLQASYAAET 633 (829)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhh-hcccchhhhhhhhhhhhhhhhh
Confidence 677777777776666555442 11112222222211 11 1111111111111 000
Q ss_pred -CCChhHHHHHHHHHHhCCCh---HHH-------HHHHHHHH-HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhh
Q 010642 196 -EKDVVSWSAMISGLAMNGHG---RDA-------IESFGAMQ-RAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKD 263 (505)
Q Consensus 196 -~~~~~~~~~li~~~~~~g~~---~~A-------~~~~~~m~-~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (505)
++-........+.+.+.... ++| +.+.+.+. +.|......|.+--+.-+...|+..+|.++-.+.+
T Consensus 634 ~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-- 711 (829)
T KOG2280|consen 634 IEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-- 711 (829)
T ss_pred hcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC--
Confidence 00011112222333332221 111 11111111 11222333344444555556666666666554443
Q ss_pred cCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHH
Q 010642 264 FGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLL 343 (505)
Q Consensus 264 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 343 (505)
-||-..|-.-+.+++..+++++-+++-+.+. .+.-|.-+..+|.+.|+.++|.+++.+... +.-..
T Consensus 712 ---ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv 777 (829)
T KOG2280|consen 712 ---IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKV 777 (829)
T ss_pred ---CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHH
Confidence 2566666666666777777777666666552 134455566667777777777666554421 11456
Q ss_pred HHHHhCCCHHHHHHHH
Q 010642 344 NLYSSVGDWEKVKELR 359 (505)
Q Consensus 344 ~~~~~~g~~~~a~~~~ 359 (505)
.+|.+.|++.+|.+.-
T Consensus 778 ~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 778 KAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHHhccHHHHHHHH
Confidence 6677777776666553
No 209
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.54 E-value=0.076 Score=41.57 Aligned_cols=140 Identities=17% Similarity=0.178 Sum_probs=86.9
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHH
Q 010642 210 AMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQA 289 (505)
Q Consensus 210 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 289 (505)
.-.|..++..++..+...+ .+..-++.++--....-+-+-..+.++.+-+-+.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 3456777777777776653 245566666665555566666666666664432222 24444444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 010642 290 YQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQ 368 (505)
Q Consensus 290 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 368 (505)
..-+-.++ .+.......+......|+-+.-.+++..+.+.+.+++.....+..+|.+.|+..++.+++.+.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44444443 234455667788889999999999999988877778889999999999999999999999999999975
No 210
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=1.1 Score=45.78 Aligned_cols=306 Identities=10% Similarity=-0.014 Sum_probs=169.0
Q ss_pred cccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCc---HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC
Q 010642 2 VRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSL---MGGLQIHARVLRDGYQLDSQLMTTLMDLYSTF 78 (505)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 78 (505)
|.-++..+.+..|+.+-..+...-... ...|.....-+.+..+. +.+..+-+++ .... .+...|.....-...+
T Consensus 444 i~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kl-s~~~-~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 444 IDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKL-SAKL-TPGISYAAIARRAYQE 520 (829)
T ss_pred hHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHh-cccC-CCceeHHHHHHHHHhc
Confidence 344566677888888777765432221 34455555555444322 2222222222 1111 3445666677666789
Q ss_pred CCHHHHHHHHhcCCCC--------ChhHHHHHHHHHHHCCChhHHHHHHHHchhccC---------CCCCCHHHHHHHHH
Q 010642 79 EKSFEACKLFDEIPQR--------DTVAWNVLISCYIRNQRTRDALCLFDNLNREES---------GCKPDDVTCLLVLQ 141 (505)
Q Consensus 79 g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---------~~~pd~~t~~~ll~ 141 (505)
|+.+.|.++++.=+.. +..-+..-+.-....|+.+-...++..+.+... ..+.....|..+++
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r 600 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMR 600 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 9999999998765431 222344455556677777776666655544100 01111112222222
Q ss_pred ---------HHHhccChHHHHHHHHHHH-H-cCCCCchhHHHHHHHHHHhcCCHHHHH----------HHHhcCCC----
Q 010642 142 ---------ACAHLGALEFGEKIHRYIS-E-HGYGSKMNLCNSLIAMYSKCGSLGMAF----------EVFKGMPE---- 196 (505)
Q Consensus 142 ---------~~~~~~~~~~a~~i~~~~~-~-~~~~~~~~~~~~l~~~y~~~g~~~~A~----------~~~~~m~~---- 196 (505)
.|-+..+......++-+-. + ..+.+-........+.+++.....-.. ++++.+..
T Consensus 601 ~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~ 680 (829)
T KOG2280|consen 601 HQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGG 680 (829)
T ss_pred hhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1222223333222222210 0 001222223344455555554422111 11222211
Q ss_pred -CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHH
Q 010642 197 -KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGC 275 (505)
Q Consensus 197 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 275 (505)
-.-.+.+--+.-+...|+..+|.++-.+.+ -||-.-|..=+.+++..+++++-+++-+... .+.-|.-
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk-------sPIGy~P 749 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK-------SPIGYLP 749 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-------CCCCchh
Confidence 122345556667778899999988877764 4788888888889999999988776554443 2566777
Q ss_pred HHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Q 010642 276 VVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEH 327 (505)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 327 (505)
++..+.+.|+.++|.+++.+.+-.+ -...+|...|++.+|.+..-+
T Consensus 750 FVe~c~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 750 FVEACLKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHHH
Confidence 8999999999999999999883222 345667777888887766543
No 211
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.52 E-value=0.74 Score=43.31 Aligned_cols=85 Identities=16% Similarity=0.138 Sum_probs=54.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCC
Q 010642 271 HHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVG 350 (505)
Q Consensus 271 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 350 (505)
.+.+..|.-+...|+...|.++-++..+ |+..-|..-+.+++..+++++-.++... ..+|..|...+.+|.+.|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFKV-PDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCC
Confidence 3444555556666777777777666654 5666777777777777777665554321 223466777777777777
Q ss_pred CHHHHHHHHHH
Q 010642 351 DWEKVKELREF 361 (505)
Q Consensus 351 ~~~~a~~~~~~ 361 (505)
+..+|..+..+
T Consensus 252 ~~~eA~~yI~k 262 (319)
T PF04840_consen 252 NKKEASKYIPK 262 (319)
T ss_pred CHHHHHHHHHh
Confidence 77777766655
No 212
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.47 E-value=0.031 Score=44.41 Aligned_cols=52 Identities=10% Similarity=0.243 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHH
Q 010642 229 GVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLL 280 (505)
Q Consensus 229 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 280 (505)
...|+..+..+++.+|+..|++..|.++.+...+.|+++.+..+|..|+.-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4667788888888888888888888888888888777777777777776543
No 213
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.45 E-value=0.42 Score=41.87 Aligned_cols=50 Identities=10% Similarity=0.008 Sum_probs=38.4
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHhcCCCCc---hHHHHHHHHHhCCCHHHHHH
Q 010642 308 LLGACRIHKHVTLGERVIEHLIELKAQESG---DYVLLLNLYSSVGDWEKVKE 357 (505)
Q Consensus 308 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~ 357 (505)
+..-|.+.|.+..|..-++.+++.-|+.+. ....|+.+|.+.|..+.+..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 345688999999999999999999887654 45678899999998885543
No 214
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.44 E-value=0.064 Score=48.88 Aligned_cols=100 Identities=10% Similarity=0.053 Sum_probs=57.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhhcCCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC----HHHHHHHHH
Q 010642 237 FTGVLSACSHCGLVDEGMMFLDRMSKDFGILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD----STIWRTLLG 310 (505)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~ 310 (505)
|...+....+.|++++|...|+.+.+.+.-.+ ....+..+...|...|++++|...|+.+ ...|+ ...+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 43333333445666666666666665432111 0134455666666667777776666666 11222 334444555
Q ss_pred HHHhcCchhHHHHHHHHHHHhcCCCC
Q 010642 311 ACRIHKHVTLGERVIEHLIELKAQES 336 (505)
Q Consensus 311 ~~~~~g~~~~a~~~~~~~~~~~~~~~ 336 (505)
.+...|+.+.|...++.+.+..|.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 66677888888888888877777654
No 215
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.11 Score=46.98 Aligned_cols=97 Identities=11% Similarity=-0.008 Sum_probs=43.3
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCC---ChhHHHHHHHHchhccCCCCCCHHHH
Q 010642 63 LDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQ---RTRDALCLFDNLNREESGCKPDDVTC 136 (505)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~pd~~t~ 136 (505)
.|..-|-.|...|...|+.+.|...|.+..+ ++...+..+..++..+. ...++..+|+++.. .-+-|..+.
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~---~D~~~iral 230 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA---LDPANIRAL 230 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh---cCCccHHHH
Confidence 3444555555555555555555555544322 34444444443333221 22344555555543 112223333
Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHc
Q 010642 137 LLVLQACAHLGALEFGEKIHRYISEH 162 (505)
Q Consensus 137 ~~ll~~~~~~~~~~~a~~i~~~~~~~ 162 (505)
..+...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 34444445555555555555555554
No 216
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.24 E-value=0.0055 Score=35.90 Aligned_cols=32 Identities=34% Similarity=0.529 Sum_probs=29.9
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHhCCCHHHHH
Q 010642 325 IEHLIELKAQESGDYVLLLNLYSSVGDWEKVK 356 (505)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 356 (505)
+++.++.+|.++.+|..|...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67889999999999999999999999999986
No 217
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.24 E-value=0.026 Score=54.27 Aligned_cols=97 Identities=11% Similarity=0.068 Sum_probs=66.1
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCH----HHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHH
Q 010642 269 NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDS----TIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLL 343 (505)
Q Consensus 269 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 343 (505)
+...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..++++++..++ .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 4566778888888888888888888886 667764 35788888888888888888888888886322 222111
Q ss_pred H--HHHhCCCHHHHHHHHHHHHhCCCC
Q 010642 344 N--LYSSVGDWEKVKELREFMNEKGLQ 368 (505)
Q Consensus 344 ~--~~~~~g~~~~a~~~~~~m~~~~~~ 368 (505)
. .+....+..+..++++...+.|..
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1 112233445677777777777764
No 218
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.24 E-value=0.042 Score=43.63 Aligned_cols=93 Identities=13% Similarity=0.188 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 010642 233 DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDSTIWRTLLGA 311 (505)
Q Consensus 233 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~ 311 (505)
|..++..++.++++.|+++....+++.. +|+.++...-. +. +..- +..|+..+..+++.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~~~---------~~-------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKKKE---------GD-------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCcccc---------Cc-------cCCCCCCCCCHHHHHHHHHH
Confidence 3456667777777777777766666543 34443321100 00 1111 445555555556666
Q ss_pred HHhcCchhHHHHHHHHHHHhc--CCCCchHHHHHH
Q 010642 312 CRIHKHVTLGERVIEHLIELK--AQESGDYVLLLN 344 (505)
Q Consensus 312 ~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~ 344 (505)
|..+|++..|.++.+...+.. |-+...|..|+.
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 655566666666655555544 222334444444
No 219
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.22 E-value=0.45 Score=42.17 Aligned_cols=163 Identities=9% Similarity=-0.007 Sum_probs=88.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC--CChh--------HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010642 171 CNSLIAMYSKCGSLGMAFEVFKGMPE--KDVV--------SWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240 (505)
Q Consensus 171 ~~~l~~~y~~~g~~~~A~~~~~~m~~--~~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 240 (505)
+++|...|.-..-+.+-...|+.-.. ..+. ..+.++..+.-.|.+.-...++++..+...+-+......+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 55666666555555555555543322 2222 2344555555566666677777777765555556666666
Q ss_pred HHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHH-----HHHHhcCChHHHHHHHHHCC-CCC-CHHHHHHHHHHHH
Q 010642 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVV-----DLLGRAGLLDQAYQLITSMG-VKP-DSTIWRTLLGACR 313 (505)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-----~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~ 313 (505)
.+.-.+.|+.+.|..+|+...+. .-..+..+.+.++ ..|.-++++.+|...+.++. ..| |+...|.-.-+..
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 66677777777777777766554 2223333333333 23444566666666666651 112 2333333222333
Q ss_pred hcCchhHHHHHHHHHHHhcCC
Q 010642 314 IHKHVTLGERVIEHLIELKAQ 334 (505)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~ 334 (505)
-.|+...|.+..+.+.+..|.
T Consensus 298 Ylg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHHHHHHHHHhccCCc
Confidence 456666666666666666654
No 220
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.21 E-value=0.021 Score=40.48 Aligned_cols=61 Identities=11% Similarity=0.196 Sum_probs=43.7
Q ss_pred HHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCch
Q 010642 278 DLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGD 338 (505)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 338 (505)
..|.+.+++++|.++++.+ ...|+ ...|......+...|+++.|...++...+..|.++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 4567777888888887777 44453 4466667777778888888888888888887765443
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.04 E-value=0.015 Score=41.87 Aligned_cols=26 Identities=4% Similarity=-0.155 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHH
Q 010642 304 IWRTLLGACRIHKHVTLGERVIEHLI 329 (505)
Q Consensus 304 ~~~~ll~~~~~~g~~~~a~~~~~~~~ 329 (505)
++..+...+...|++++|++.+++..
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444455555555555555555444
No 222
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.02 E-value=0.016 Score=36.34 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHH
Q 010642 303 TIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLL 343 (505)
Q Consensus 303 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 343 (505)
.+|..+..++...|++++|+++++++++..|+++..+..|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 35677888899999999999999999999998887777664
No 223
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.94 E-value=0.36 Score=48.13 Aligned_cols=205 Identities=14% Similarity=0.157 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCC
Q 010642 13 EGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIP 92 (505)
Q Consensus 13 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 92 (505)
+-+.-+++|.+.|..|+... +...|+-.|.+.+|-++|.+ .|.. |.-+.+|.....++.|.++...-.
T Consensus 618 ~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~g~ 685 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGSGD 685 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhcCC
Confidence 44555677888888888654 34567778899999988854 4533 234455555555666655554322
Q ss_pred CC-------ChhHH-------HHHHHHHHHCCChhHHHHHHHHc------hhccCCC---CCCHHHHHHHHHHHHhccCh
Q 010642 93 QR-------DTVAW-------NVLISCYIRNQRTRDALCLFDNL------NREESGC---KPDDVTCLLVLQACAHLGAL 149 (505)
Q Consensus 93 ~~-------~~~~~-------~~li~~~~~~g~~~~A~~~~~~m------~~~~~~~---~pd~~t~~~ll~~~~~~~~~ 149 (505)
.. ....| .+-...+...|+.++|..+.-+- .. -+- ..+..+...+..-+-+...+
T Consensus 686 ~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lid--I~rkld~~ere~l~~~a~ylk~l~~~ 763 (1081)
T KOG1538|consen 686 PKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLID--IARKLDKAEREPLLLCATYLKKLDSP 763 (1081)
T ss_pred hHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHH--HHhhcchhhhhHHHHHHHHHhhcccc
Confidence 10 00111 12233444556666655443210 00 011 12233444444444455556
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 010642 150 EFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAG 229 (505)
Q Consensus 150 ~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 229 (505)
..|.++|..|-.. ..++++....+++++|..+-++.++--...|-.-..-++...++++|.+
T Consensus 764 gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqk--------- 825 (1081)
T KOG1538|consen 764 GLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQK--------- 825 (1081)
T ss_pred chHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHH---------
Confidence 6666666554332 2466667777777777777777765332233333333344444444433
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 010642 230 VFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 230 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (505)
+|-+.|+-.+|.++++++..
T Consensus 826 -------------AfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 826 -------------AFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred -------------HHHHhcchHHHHHHHHHhhh
Confidence 34445666666666666643
No 224
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.91 E-value=0.57 Score=46.24 Aligned_cols=132 Identities=15% Similarity=0.047 Sum_probs=90.7
Q ss_pred hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCC
Q 010642 32 ACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQR 111 (505)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 111 (505)
-...++.-+-+.|-.+.|+++. .|+ ..-.++..++|+++.|.++.+... +...|..|.....++|+
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~---------~D~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFV---------TDP---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGN 362 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHS---------S-H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHCCCHHHHHhhc---------CCh---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCC
Confidence 3566666667777777777653 232 233455678899999988887765 56789999999999999
Q ss_pred hhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 010642 112 TRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVF 191 (505)
Q Consensus 112 ~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~ 191 (505)
++-|.+.|.+... |..++-.|.-.|+.+.-.++.....+.| -+|....++.-.|+.++..+++
T Consensus 363 ~~lAe~c~~k~~d-----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 363 IELAEECYQKAKD-----------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHHhhcC-----------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999988755 5666667778888888888887777766 2455555566667777777666
Q ss_pred hcC
Q 010642 192 KGM 194 (505)
Q Consensus 192 ~~m 194 (505)
.+.
T Consensus 426 ~~~ 428 (443)
T PF04053_consen 426 IET 428 (443)
T ss_dssp HHT
T ss_pred HHc
Confidence 543
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.87 E-value=0.023 Score=40.91 Aligned_cols=62 Identities=15% Similarity=0.170 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHhc---C-C---CCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 303 TIWRTLLGACRIHKHVTLGERVIEHLIELK---A-Q---ESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 303 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~-~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
.+++.+...+...|++++|+..+++..+.. + . ...++..+...|...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467888888999999999999999977652 2 1 134678899999999999999999987643
No 226
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.70 E-value=0.15 Score=39.87 Aligned_cols=90 Identities=20% Similarity=0.235 Sum_probs=67.2
Q ss_pred HHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCc----hHHHHHHHHHhCCCH
Q 010642 279 LLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESG----DYVLLLNLYSSVGDW 352 (505)
Q Consensus 279 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~ 352 (505)
++...|+++.|++.|.+. .+-| ....||.-..+++-.|+.++|..-+++..++..+... .|+.-...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 466778888888888776 3333 5667888888888888888888888888887643332 466667778888888
Q ss_pred HHHHHHHHHHHhCCCC
Q 010642 353 EKVKELREFMNEKGLQ 368 (505)
Q Consensus 353 ~~a~~~~~~m~~~~~~ 368 (505)
+.|..-|+...+.|-+
T Consensus 132 d~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 132 DAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHhHHHHHHhCCH
Confidence 8888888887777653
No 227
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.37 E-value=0.065 Score=44.13 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=22.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010642 205 MISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRM 260 (505)
Q Consensus 205 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 260 (505)
++..+...|++++|..+.+.+.... +.|...+..++.++...|+..+|.++|+.+
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3333444444444444444444421 113334444444444444444444444443
No 228
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.35 E-value=1.8 Score=38.12 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=45.9
Q ss_pred HHHHHHhcCChHHHHHHHHHC-------CCCCCH-HHHHHHHHHHHhcCchhHHHHHHHHHHHhc----CCCCchHHHHH
Q 010642 276 VVDLLGRAGLLDQAYQLITSM-------GVKPDS-TIWRTLLGACRIHKHVTLGERVIEHLIELK----AQESGDYVLLL 343 (505)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~l~ 343 (505)
....|.+..++++|-..|.+- .--|+. ..|-+.|-.+.-..++..|++.++.-.+.. +.+..+...|+
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 344566666666665554443 111222 123344444555567777777777754433 44455666777
Q ss_pred HHHHhCCCHHHHHHHH
Q 010642 344 NLYSSVGDWEKVKELR 359 (505)
Q Consensus 344 ~~~~~~g~~~~a~~~~ 359 (505)
.+| ..|+.+++..+.
T Consensus 236 ~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 236 TAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHh-ccCCHHHHHHHH
Confidence 777 556777766554
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.32 E-value=0.097 Score=50.47 Aligned_cols=61 Identities=10% Similarity=0.000 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcc----hHHHHHHHHHhcCChHHHHHHHHHC
Q 010642 233 DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIH----HYGCVVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 233 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~ 296 (505)
+...++.+..+|.+.|++++|+..|++..+ +.|+.. .|..+..+|...|++++|++.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456888999999999999999999999875 356643 4889999999999999999999987
No 230
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.30 E-value=0.17 Score=45.29 Aligned_cols=99 Identities=11% Similarity=0.059 Sum_probs=45.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC----CCCCC-HHHHHHHH
Q 010642 236 TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM----GVKPD-STIWRTLL 309 (505)
Q Consensus 236 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll 309 (505)
.|+..+..+ +.|++..|.+-|...++.|.-.+ ....+-.|...+...|++++|...|..+ +-.|- +..+-.|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455444433 34556666666666665321111 1223334555555555555555555444 22221 23333444
Q ss_pred HHHHhcCchhHHHHHHHHHHHhcCCC
Q 010642 310 GACRIHKHVTLGERVIEHLIELKAQE 335 (505)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~~~~~ 335 (505)
......|+.++|...|+++.+..|..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 44445555555555555555555444
No 231
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.27 E-value=3 Score=40.21 Aligned_cols=343 Identities=11% Similarity=0.062 Sum_probs=181.9
Q ss_pred hcCCchHHHHHHHHHHhC--CCCC------------ChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCC----CCChhHH
Q 010642 7 MSSSPEEGFYLFEKMRQK--RIPT------------NPFACSFAIKCCMKFCSLMGGLQIHARVLRDGY----QLDSQLM 68 (505)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~--g~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~ 68 (505)
+.+.+.+|++.|..-... +..| |-.-=+..+.++...|++.+|+.++++++..=+ .-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 567788888888766554 3222 111223345677889999999999998876544 3788899
Q ss_pred HHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHC-------------------------------CChhHHHH
Q 010642 69 TTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRN-------------------------------QRTRDALC 117 (505)
Q Consensus 69 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-------------------------------g~~~~A~~ 117 (505)
+.++-++++.=-++.-.. +...=..-|.-||..|.+. .+..--++
T Consensus 171 d~~vlmlsrSYfLEl~e~----~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq 246 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKES----MSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQ 246 (549)
T ss_pred HHHHHHHhHHHHHHHHHh----cccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHH
Confidence 988877766422221111 1111011122333333221 11111222
Q ss_pred HHHHchhccCCCCCCHHH-HHHHHHHHHhccChHHHHHHHHHHHHcCCCC----chhHHHHHHHHHHhcCCHHHHHHHHh
Q 010642 118 LFDNLNREESGCKPDDVT-CLLVLQACAHLGALEFGEKIHRYISEHGYGS----KMNLCNSLIAMYSKCGSLGMAFEVFK 192 (505)
Q Consensus 118 ~~~~m~~~~~~~~pd~~t-~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~----~~~~~~~l~~~y~~~g~~~~A~~~~~ 192 (505)
++....+ .-+.|+-.. ...+...+.+ +.+++..+-+.+....+.+ -..++..++....+.++...|.+.+.
T Consensus 247 ~l~~We~--~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~ 322 (549)
T PF07079_consen 247 ILENWEN--FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLA 322 (549)
T ss_pred HHHHHHh--hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 2222222 334454322 2233333332 5555555555444332111 13456666677777777777777666
Q ss_pred cCC--CCChhHH-------HHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHH-HHHH---HHHHhccCC-HHHHH
Q 010642 193 GMP--EKDVVSW-------SAMISGLAM----NGHGRDAIESFGAMQRAGVFPDDQT-FTGV---LSACSHCGL-VDEGM 254 (505)
Q Consensus 193 ~m~--~~~~~~~-------~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t-~~~l---l~~~~~~g~-~~~a~ 254 (505)
-+. +|+...- ..+-+..+. .-+..+=+.+|.......+ |..- ...+ ..-+-+.|. -++|.
T Consensus 323 lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekal 400 (549)
T PF07079_consen 323 LLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKAL 400 (549)
T ss_pred HHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHH
Confidence 443 3333211 122222221 1122334455555554332 2211 1111 222344455 77888
Q ss_pred HHHHHHhhhcCCcC-CcchHHHHH----HHHHhc---CChH---HHHHHHHHCCCCCC----HHHHHHHHHH--HHhcCc
Q 010642 255 MFLDRMSKDFGILP-NIHHYGCVV----DLLGRA---GLLD---QAYQLITSMGVKPD----STIWRTLLGA--CRIHKH 317 (505)
Q Consensus 255 ~~~~~~~~~~~~~p-~~~~~~~li----~~~~~~---g~~~---~A~~~~~~~~~~p~----~~~~~~ll~~--~~~~g~ 317 (505)
.+++.+.+ +.| |...-|... ..|.++ ..+. +-..++++.|+.|- ...-|.|..| +..+|+
T Consensus 401 nLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqge 477 (549)
T PF07079_consen 401 NLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGE 477 (549)
T ss_pred HHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhccc
Confidence 88888875 223 333322222 122221 1122 23344455577663 3455556555 467899
Q ss_pred hhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 318 VTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 318 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
+.++.-.-..+.+..| ++.+|..+.-......++++|..++..+.
T Consensus 478 y~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 478 YHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 9999988888888888 78999999999999999999999997653
No 232
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.24 E-value=1.5 Score=40.95 Aligned_cols=125 Identities=14% Similarity=0.100 Sum_probs=79.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhhcCC--cC--CcchHHHHHHHHHhcCChHHHHHHHHHC-------CCCCCHHHHH
Q 010642 238 TGVLSACSHCGLVDEGMMFLDRMSKDFGI--LP--NIHHYGCVVDLLGRAGLLDQAYQLITSM-------GVKPDSTIWR 306 (505)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~ 306 (505)
.++..++...+.++++.+.|+...+--.- .| ...++-.|...|.+..++++|.-+..+. ++..-..-|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 34555666667778887777776542111 11 3456778888888888888776555444 3332122233
Q ss_pred -----HHHHHHHhcCchhHHHHHHHHHHHhc--CCC----CchHHHHHHHHHhCCCHHHHHHHHHHH
Q 010642 307 -----TLLGACRIHKHVTLGERVIEHLIELK--AQE----SGDYVLLLNLYSSVGDWEKVKELREFM 362 (505)
Q Consensus 307 -----~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m 362 (505)
.+..+++..|....|.+..++..++. ..| ......+.+.|...|+.+.|..-|+..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 34467788888888888888876653 222 234457888888888888887766643
No 233
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.19 E-value=1.4 Score=35.85 Aligned_cols=86 Identities=14% Similarity=0.144 Sum_probs=55.1
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCCh
Q 010642 33 CSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRT 112 (505)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 112 (505)
...++..+...+........++.+++.+ ..+....+.++..|++.+ ..+....++. ..+.......+..+.+.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 4566677776777888888888888776 467778888888888764 3444444442 12223334456666666666
Q ss_pred hHHHHHHHHc
Q 010642 113 RDALCLFDNL 122 (505)
Q Consensus 113 ~~A~~~~~~m 122 (505)
+++..++.++
T Consensus 86 ~~~~~l~~k~ 95 (140)
T smart00299 86 EEAVELYKKD 95 (140)
T ss_pred HHHHHHHHhh
Confidence 6666666655
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.24 Score=46.76 Aligned_cols=63 Identities=8% Similarity=0.004 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 303 TIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 303 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
.++..|..++.+.+++..|++..++.++++|+|.....--..+|...|+++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 456667778889999999999999999999999999999999999999999999999998764
No 235
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.02 E-value=2.9 Score=39.94 Aligned_cols=162 Identities=14% Similarity=0.029 Sum_probs=102.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHHhhhcCCcCCcchHHHHH
Q 010642 204 AMISGLAMNGHGRDAIESFGAMQRAG---VFPDDQTFTGVLSACSH---CGLVDEGMMFLDRMSKDFGILPNIHHYGCVV 277 (505)
Q Consensus 204 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 277 (505)
.++-+|-...+++..+++.+.+.... +.-....-....-|+.+ .|+.++|.+++..+... .-.+++.+|..+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHHHH
Confidence 45556889999999999999998641 11111111233345566 89999999999996554 6667888888877
Q ss_pred HHHHh---------cCChHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCch----hHHHHHH----HHHHHhc----CCC
Q 010642 278 DLLGR---------AGLLDQAYQLITSM-GVKPDSTIWRTLLGACRIHKHV----TLGERVI----EHLIELK----AQE 335 (505)
Q Consensus 278 ~~~~~---------~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~----~~a~~~~----~~~~~~~----~~~ 335 (505)
..|-. ...+++|.+.|.+. .++||...=-.+...+...|.- .+..++. ..+.+.+ ..+
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 76542 23478899999887 6666654322222222233321 1222222 1122222 122
Q ss_pred CchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 336 SGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 336 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
--.+.+++.++.-.|+.+.|.+..++|.+..
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2355689999999999999999999998764
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.00 E-value=1.5 Score=43.96 Aligned_cols=161 Identities=12% Similarity=0.058 Sum_probs=105.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCH-----HHHHHHHHHHhc----cCCHHHHHHHHHHHhhhcCCcCCcc
Q 010642 202 WSAMISGLAMNGHGRDAIESFGAMQRA-GVFPDD-----QTFTGVLSACSH----CGLVDEGMMFLDRMSKDFGILPNIH 271 (505)
Q Consensus 202 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-----~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~ 271 (505)
...+++...-.|+-+.+++.+.+..+. ++.-.. .+|..++..+.. ....+.|.++++.+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 334455555567777777776665442 222111 233344443333 45678899999999875 36655
Q ss_pred hHHHH-HHHHHhcCChHHHHHHHHHC-CCC-----CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHH-H
Q 010642 272 HYGCV-VDLLGRAGLLDQAYQLITSM-GVK-----PDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLL-L 343 (505)
Q Consensus 272 ~~~~l-i~~~~~~g~~~~A~~~~~~~-~~~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l-~ 343 (505)
.|... .+.+...|++++|.+.|++. ..+ .....+.-+.-.+....++++|...+..+.+...-+...|..+ .
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 55433 35677789999999999976 111 1233444455667888999999999999999877666666644 4
Q ss_pred HHHHhCCCH-------HHHHHHHHHHHhC
Q 010642 344 NLYSSVGDW-------EKVKELREFMNEK 365 (505)
Q Consensus 344 ~~~~~~g~~-------~~a~~~~~~m~~~ 365 (505)
..|...|+. ++|.+++.+....
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 455778888 8888888887653
No 237
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.46 Score=44.95 Aligned_cols=95 Identities=11% Similarity=0.041 Sum_probs=75.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHC-CCC-CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHh
Q 010642 271 HHYGCVVDLLGRAGLLDQAYQLITSM-GVK-PDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSS 348 (505)
Q Consensus 271 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 348 (505)
.+++.|.-.|.+.+++.+|++.-++. ... +|.-..-.=..++...|+++.|+..|+++++..|.|..+-.-|+..-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 35667778899999999999888877 444 4566666667889999999999999999999999998887777777766
Q ss_pred CCCHHHH-HHHHHHHHhC
Q 010642 349 VGDWEKV-KELREFMNEK 365 (505)
Q Consensus 349 ~g~~~~a-~~~~~~m~~~ 365 (505)
..+..+. .++|..|...
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 6665544 7888888653
No 238
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.87 E-value=2.5 Score=37.04 Aligned_cols=194 Identities=18% Similarity=0.075 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 010642 169 NLCNSLIAMYSKCGSLGMAFEVFKGMP-----EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLS- 242 (505)
Q Consensus 169 ~~~~~l~~~y~~~g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~- 242 (505)
.........+...+.+..+...+.... ......+......+...+.+..+.+.+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 344444455555555555555444432 12223344444444455555555555555554322221 11111111
Q ss_pred HHhccCCHHHHHHHHHHHhhhcCC--cCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC--HHHHHHHHHHHHhcCc
Q 010642 243 ACSHCGLVDEGMMFLDRMSKDFGI--LPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD--STIWRTLLGACRIHKH 317 (505)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~ 317 (505)
.+...|+++.+...+.+.... .. ......+......+...++.+.|...+.+. ...|+ ...+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 455556666666655555321 10 011222222233344555666666666555 22222 3455555555666666
Q ss_pred hhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 318 VTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 318 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
++.|...+.......|.....+..+...+...+.++++...+.+...
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666655334444555555555556666666655543
No 239
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.78 E-value=0.81 Score=45.20 Aligned_cols=132 Identities=16% Similarity=0.187 Sum_probs=61.9
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCh
Q 010642 136 CLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHG 215 (505)
Q Consensus 136 ~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 215 (505)
...+++-+.+.|..+.|.++-. |+ ..-.+...++|+++.|.++-++.. +...|..|.....+.|+.
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~ 363 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNI 363 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBH
T ss_pred HHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCH
Confidence 4444555555555555554421 11 112333455666666666655544 444666666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 010642 216 RDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITS 295 (505)
Q Consensus 216 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 295 (505)
+-|.+.|.+..+ |..|+--|.-.|+.+.-.++.+..... | -++....++.-.|+.++..+++.+
T Consensus 364 ~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 364 ELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666655432 333444444555555544444444332 1 133333344444555555555555
Q ss_pred CC
Q 010642 296 MG 297 (505)
Q Consensus 296 ~~ 297 (505)
.+
T Consensus 428 ~~ 429 (443)
T PF04053_consen 428 TG 429 (443)
T ss_dssp TT
T ss_pred cC
Confidence 43
No 240
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.67 E-value=1.7 Score=35.34 Aligned_cols=43 Identities=19% Similarity=0.093 Sum_probs=26.1
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 010642 138 LVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKC 181 (505)
Q Consensus 138 ~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~ 181 (505)
.++..+...+.......+++.+.+.+ +.+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 44555555566666666666666655 35556666666666654
No 241
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=2.2 Score=38.77 Aligned_cols=29 Identities=14% Similarity=0.103 Sum_probs=16.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 010642 167 KMNLCNSLIAMYSKCGSLGMAFEVFKGMP 195 (505)
Q Consensus 167 ~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 195 (505)
|...-..|...|...|+.++|.+.+-.+.
T Consensus 235 d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 235 DVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555555556666666666555544443
No 242
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.58 E-value=7.3 Score=42.36 Aligned_cols=114 Identities=18% Similarity=0.147 Sum_probs=59.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 010642 172 NSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVD 251 (505)
Q Consensus 172 ~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 251 (505)
.-.++.--+.|.+++|..++.-=.+.-...|.+...-+.+...+++|.-.|+..-+ ..-.+.+|..+|++.
T Consensus 912 ~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr 982 (1265)
T KOG1920|consen 912 PECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWR 982 (1265)
T ss_pred HHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHH
Confidence 33334444455555555554432222223344444444455666666665554321 122456667777777
Q ss_pred HHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC
Q 010642 252 EGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 252 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 296 (505)
+|..+..++.. +-.--..+-..|+.-+...++.-+|-++..+.
T Consensus 983 ~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 983 EALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 77777666643 11111222345666677777777777776666
No 243
>PRK15331 chaperone protein SicA; Provisional
Probab=94.54 E-value=0.54 Score=38.84 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=6.2
Q ss_pred HCCChhHHHHHHHHc
Q 010642 108 RNQRTRDALCLFDNL 122 (505)
Q Consensus 108 ~~g~~~~A~~~~~~m 122 (505)
..|++++|..+|+-+
T Consensus 49 ~~Gk~~eA~~~F~~L 63 (165)
T PRK15331 49 NQGRLDEAETFFRFL 63 (165)
T ss_pred HCCCHHHHHHHHHHH
Confidence 334444444444433
No 244
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.53 E-value=3.1 Score=36.73 Aligned_cols=204 Identities=9% Similarity=-0.005 Sum_probs=108.5
Q ss_pred CCCChh----hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCC--hhHH
Q 010642 26 IPTNPF----ACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRD--TVAW 99 (505)
Q Consensus 26 ~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~ 99 (505)
.+||-. .|.....+|....+++.|...+.+..+. ...+...|.+ ...++.|.-+.+++.+-+ +..|
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~ 94 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLY 94 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456543 4555566777888899888877766532 2333333332 223455555665555422 3346
Q ss_pred HHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCC-----CCchhHHHHH
Q 010642 100 NVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGY-----GSKMNLCNSL 174 (505)
Q Consensus 100 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~-----~~~~~~~~~l 174 (505)
+--...|...|.++.|-..+++.-+. ....+++.|.+++++....-. ..-...+..+
T Consensus 95 eKAs~lY~E~GspdtAAmaleKAak~------------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKAAKA------------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHH------------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 66778888888888887777766441 223344555555554433210 1112334455
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC--------CCh-hHHHHHHHHHHhCCChHHHHHHHHHHHHCC---CCCCHHHHHHHHH
Q 010642 175 IAMYSKCGSLGMAFEVFKGMPE--------KDV-VSWSAMISGLAMNGHGRDAIESFGAMQRAG---VFPDDQTFTGVLS 242 (505)
Q Consensus 175 ~~~y~~~g~~~~A~~~~~~m~~--------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~ 242 (505)
...+.+..++++|-..|.+-.. ++. ..|-+.|-.|.-..++..|...++.--+.+ -.-+..+...||.
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 5666677777776666554321 111 123444444555556666666666633321 1113345566666
Q ss_pred HHhccCCHHHHHHH
Q 010642 243 ACSHCGLVDEGMMF 256 (505)
Q Consensus 243 ~~~~~g~~~~a~~~ 256 (505)
+|- .|+.++...+
T Consensus 237 ayd-~gD~E~~~kv 249 (308)
T KOG1585|consen 237 AYD-EGDIEEIKKV 249 (308)
T ss_pred Hhc-cCCHHHHHHH
Confidence 553 3555554443
No 245
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.47 E-value=0.37 Score=43.15 Aligned_cols=100 Identities=18% Similarity=0.251 Sum_probs=78.4
Q ss_pred HHHHHHhcCC--CCChhHHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----------
Q 010642 186 MAFEVFKGMP--EKDVVSWSAMISGLAMN-----GHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCG---------- 248 (505)
Q Consensus 186 ~A~~~~~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---------- 248 (505)
..+..|.... ++|-.+|-+++..+... +..+=....++.|.+.|+.-|..+|..||..+=+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666666 67888888888887654 456666777889999999999999999998875532
Q ss_pred ------CHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCCh
Q 010642 249 ------LVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLL 286 (505)
Q Consensus 249 ------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 286 (505)
+-+=++.++++|.. +|+.||-.+-..|+.++++.+..
T Consensus 132 F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 22447889999987 49999999999999999988764
No 246
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.43 E-value=6.1 Score=39.63 Aligned_cols=339 Identities=12% Similarity=0.047 Sum_probs=189.9
Q ss_pred cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHH-ccCCcHHHHHHHHHHHHh-CC-CCChhHHHHHHHHHHhCCCHHHH
Q 010642 8 SSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCM-KFCSLMGGLQIHARVLRD-GY-QLDSQLMTTLMDLYSTFEKSFEA 84 (505)
Q Consensus 8 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~A 84 (505)
-|..+.+..+|++-++ |++-+...|...+.-+. ..|+.+.....|+.+... |. -.....|...|..-..+++....
T Consensus 92 lg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v 170 (577)
T KOG1258|consen 92 LGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRV 170 (577)
T ss_pred hhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHH
Confidence 4566677777777765 34445555555554333 335666666666666543 21 12344566666666667777777
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHH---C------CChhHHHHHHHHchhc--cCCCCCCHHHHHHHH-------------
Q 010642 85 CKLFDEIPQRDTVAWNVLISCYIR---N------QRTRDALCLFDNLNRE--ESGCKPDDVTCLLVL------------- 140 (505)
Q Consensus 85 ~~~~~~~~~~~~~~~~~li~~~~~---~------g~~~~A~~~~~~m~~~--~~~~~pd~~t~~~ll------------- 140 (505)
..+++++.+-....++..-.-|.+ . ...+++.++-.....+ .....+.......-+
T Consensus 171 ~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~ 250 (577)
T KOG1258|consen 171 ANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEE 250 (577)
T ss_pred HHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHH
Confidence 777777766444444443333322 1 1222222222211100 000001111111111
Q ss_pred -----HHHH-------hccChHHHHHHHHHHHHc-------CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---
Q 010642 141 -----QACA-------HLGALEFGEKIHRYISEH-------GYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKD--- 198 (505)
Q Consensus 141 -----~~~~-------~~~~~~~a~~i~~~~~~~-------~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~--- 198 (505)
..+. ........+..++.-++. -.+++..+|...++.-.+.|+.+.+.-+|++..-|-
T Consensus 251 ~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y 330 (577)
T KOG1258|consen 251 KTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALY 330 (577)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhh
Confidence 1110 001111111112211111 112345678888888899999999999999887552
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC-cchHHHHH
Q 010642 199 VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN-IHHYGCVV 277 (505)
Q Consensus 199 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li 277 (505)
...|-..+.-....|+.+-|..++....+--++-...+-..-..-+-..|+++.|..+++.+.++ . |+ +..-..-+
T Consensus 331 ~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~ 407 (577)
T KOG1258|consen 331 DEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKI 407 (577)
T ss_pred HHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHH
Confidence 23455555555555888888887776665433323322222222345678999999999999985 3 54 33444456
Q ss_pred HHHHhcCChHHHH---HHHHHC-CCCCCHHHHHHHHHH-----HHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHh
Q 010642 278 DLLGRAGLLDQAY---QLITSM-GVKPDSTIWRTLLGA-----CRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSS 348 (505)
Q Consensus 278 ~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 348 (505)
....+.|..+.+. +++... ..+-+..+...+..- +...++.+.|..++.++.+..|++...|..+++....
T Consensus 408 ~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 408 NWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELI 487 (577)
T ss_pred hHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHh
Confidence 6778889999888 555554 222233333333322 3456789999999999999999999999999988876
Q ss_pred CC
Q 010642 349 VG 350 (505)
Q Consensus 349 ~g 350 (505)
.+
T Consensus 488 ~~ 489 (577)
T KOG1258|consen 488 QP 489 (577)
T ss_pred CC
Confidence 65
No 247
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.42 E-value=3.2 Score=36.31 Aligned_cols=199 Identities=15% Similarity=0.065 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-hhHHHHHHH-H
Q 010642 134 VTCLLVLQACAHLGALEFGEKIHRYISEH-GYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE--KD-VVSWSAMIS-G 208 (505)
Q Consensus 134 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~-~ 208 (505)
..+......+...+.+..+...+...... ........+..+...+...+++..+...+..... ++ ......... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 33444444444455555554444444431 2233344445555555555556666666555443 11 122222222 5
Q ss_pred HHhCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcC-CcchHHHHHHHHHhcCC
Q 010642 209 LAMNGHGRDAIESFGAMQRAGV--FPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILP-NIHHYGCVVDLLGRAGL 285 (505)
Q Consensus 209 ~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 285 (505)
+...|+++.|...|.+...... ......+......+...++.+.+...+...... .+. ....+..+...+...++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHccc
Confidence 7777778888887777744211 112233344444466777888888888888753 223 35667777777888888
Q ss_pred hHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 010642 286 LDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQ 334 (505)
Q Consensus 286 ~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 334 (505)
++.|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 88888888777 44454 344444455555667788888888888887765
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.41 E-value=1.2 Score=44.53 Aligned_cols=171 Identities=14% Similarity=0.113 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCC-C---------hhHHHHHHHHHHH----CCChhH
Q 010642 49 GLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQR-D---------TVAWNVLISCYIR----NQRTRD 114 (505)
Q Consensus 49 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~---------~~~~~~li~~~~~----~g~~~~ 114 (505)
+.-+|..++.. +|| ....++...+=.||-+.+++.+....+. + ...|+..+..+.. ....+.
T Consensus 176 G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 44566666554 343 3455666667778888888888765542 2 2345555555544 456778
Q ss_pred HHHHHHHchhccCCCCCCHHHHHHH-HHHHHhccChHHHHHHHHHHHHc--CC-CCchhHHHHHHHHHHhcCCHHHHHHH
Q 010642 115 ALCLFDNLNREESGCKPDDVTCLLV-LQACAHLGALEFGEKIHRYISEH--GY-GSKMNLCNSLIAMYSKCGSLGMAFEV 190 (505)
Q Consensus 115 A~~~~~~m~~~~~~~~pd~~t~~~l-l~~~~~~~~~~~a~~i~~~~~~~--~~-~~~~~~~~~l~~~y~~~g~~~~A~~~ 190 (505)
|.+++..+.+ .-|+...|... .+.+...|++++|.+.++.+... .. ......+--+...+.-.+++++|...
T Consensus 252 a~~lL~~~~~----~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 252 AEELLEEMLK----RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred HHHHHHHHHH----hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 9999999866 56776665543 45667789999999999976542 11 22334455677788889999999999
Q ss_pred HhcCCCCC---hhHHHHHH-HHHHhCCCh-------HHHHHHHHHHHH
Q 010642 191 FKGMPEKD---VVSWSAMI-SGLAMNGHG-------RDAIESFGAMQR 227 (505)
Q Consensus 191 ~~~m~~~~---~~~~~~li-~~~~~~g~~-------~~A~~~~~~m~~ 227 (505)
|..+.+.+ ...|.-+. .++...|+. ++|.++|.+...
T Consensus 328 f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 328 FLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99987543 22333333 345567777 888888888653
No 249
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.38 E-value=7.7 Score=40.59 Aligned_cols=117 Identities=6% Similarity=-0.063 Sum_probs=69.7
Q ss_pred cCCHHHHHHHHHHHhhhcCCcCCcc--hHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCchhHHHH
Q 010642 247 CGLVDEGMMFLDRMSKDFGILPNIH--HYGCVVDLLGRAGLLDQAYQLITSM-GVKPDSTIWRTLLGACRIHKHVTLGER 323 (505)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~ 323 (505)
..+.+.|...+.......++.+... .+..+.......+..++|...+... ....+...+.--+......++++.+..
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~ 333 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNT 333 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHH
Confidence 3455778888877655434433322 2333433333333366777777765 222233444444445557788877777
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 324 VIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
.+..|-......+.-..-+.+++...|+.++|...|+...
T Consensus 334 ~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 334 WLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777655444445566677888777888888888888763
No 250
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.37 E-value=3.5 Score=40.41 Aligned_cols=143 Identities=13% Similarity=0.058 Sum_probs=69.9
Q ss_pred HHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 010642 103 ISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCG 182 (505)
Q Consensus 103 i~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g 182 (505)
+.-.-+..+++.-+++-++..+ +.||..+.-.++. --......++++++++.++.|-.. +-.....+.
T Consensus 175 Mq~AWRERnp~aRIkaA~eALe----i~pdCAdAYILLA-EEeA~Ti~Eae~l~rqAvkAgE~~-------lg~s~~~~~ 242 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALE----INPDCADAYILLA-EEEASTIVEAEELLRQAVKAGEAS-------LGKSQFLQH 242 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH----hhhhhhHHHhhcc-cccccCHHHHHHHHHHHHHHHHHh-------hchhhhhhc
Confidence 3333444555555555555544 4555443332221 123445677888888877754110 000000000
Q ss_pred CHHHHHHHHhcCCCCC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHH
Q 010642 183 SLGMAFEVFKGMPEKD----VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP-DDQTFTGVLSACSHCGLVDEGMMFL 257 (505)
Q Consensus 183 ~~~~A~~~~~~m~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~ 257 (505)
. -..++....++ +..-..+..+.-+.|+.++|++.|++|.+....- +....-.|+.++...+.+.++..++
T Consensus 243 ~----g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 243 H----GHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred c----cchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 0 00111111222 2233345555667777777777777776542211 2234456677777777777777777
Q ss_pred HHHh
Q 010642 258 DRMS 261 (505)
Q Consensus 258 ~~~~ 261 (505)
.+..
T Consensus 319 ~kYd 322 (539)
T PF04184_consen 319 AKYD 322 (539)
T ss_pred HHhc
Confidence 7654
No 251
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.36 E-value=1.3 Score=35.83 Aligned_cols=56 Identities=11% Similarity=0.058 Sum_probs=30.5
Q ss_pred HhcCChHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCC
Q 010642 281 GRAGLLDQAYQLITSM----GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQES 336 (505)
Q Consensus 281 ~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 336 (505)
.+.|++++|.+.|+.+ +..| ....--.|+.++.+.++++.|...+++.+++.|.++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 3455555555555555 2112 123334455666666666666666666666665544
No 252
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.32 E-value=1.4 Score=42.99 Aligned_cols=148 Identities=12% Similarity=0.041 Sum_probs=77.6
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHH
Q 010642 211 MNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAY 290 (505)
Q Consensus 211 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 290 (505)
+..++.+-++.-++..+ +.||-.+.-.++ +--....+.++.+++++..+. +- ..+. .....+ ......
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-gE----~~lg---~s~~~~-~~g~~~ 247 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-GE----ASLG---KSQFLQ-HHGHFW 247 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-HH----Hhhc---hhhhhh-cccchh
Confidence 44455555555555554 445543322222 333445577788887777653 10 0000 000000 000011
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCC--CCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 010642 291 QLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQ--ESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQ 368 (505)
Q Consensus 291 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 368 (505)
+.+..-..+|-..+=..|..++.+.|+.++|++.++.+.+..|. +-.....|+..+...+.+.++..++.+-.+...+
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 11111112222333345666677888888888888888776643 3346667888888888888888888776554444
Q ss_pred CC
Q 010642 369 TT 370 (505)
Q Consensus 369 ~~ 370 (505)
+.
T Consensus 328 kS 329 (539)
T PF04184_consen 328 KS 329 (539)
T ss_pred ch
Confidence 43
No 253
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.22 E-value=1.9 Score=39.85 Aligned_cols=144 Identities=10% Similarity=-0.018 Sum_probs=72.3
Q ss_pred cCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH--HHH--HHHHHHhccCCHHHH
Q 010642 181 CGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQ--TFT--GVLSACSHCGLVDEG 253 (505)
Q Consensus 181 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~--~ll~~~~~~g~~~~a 253 (505)
.|+..+|-..++++.+ .|..+++.-=.++.-+|+.+.-...++++... ..||.. .|. ...-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4555555555555542 35556666666666666666666666666533 223332 222 122234456666666
Q ss_pred HHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCC---C---HHHHHHHHHHHHhcCchhHHHHHHHH
Q 010642 254 MMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKP---D---STIWRTLLGACRIHKHVTLGERVIEH 327 (505)
Q Consensus 254 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p---~---~~~~~~ll~~~~~~g~~~~a~~~~~~ 327 (505)
++.-++..+- .+.|...-.+....+.-.|++.++.+++.+-.-.- + ...|....-.+...+.++.|+.+|++
T Consensus 195 Ek~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 195 EKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 6665555431 12233444555566666666777766666541000 0 11111122223444666666666665
No 254
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.10 E-value=4.1 Score=44.12 Aligned_cols=76 Identities=18% Similarity=0.153 Sum_probs=40.0
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCCh
Q 010642 209 LAMNGHGRDAIESFGAMQRAGVFPDDQ--TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLL 286 (505)
Q Consensus 209 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 286 (505)
|...|+|.+|+.+-.++... -|.. +--.|..-+...++.-+|-++..+...+ | .-.+..|++...+
T Consensus 975 ~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd----~-----~~av~ll~ka~~~ 1042 (1265)
T KOG1920|consen 975 YKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD----P-----EEAVALLCKAKEW 1042 (1265)
T ss_pred HHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC----H-----HHHHHHHhhHhHH
Confidence 34556666666666655321 1111 1134555556666666666666655543 2 2234556666666
Q ss_pred HHHHHHHHHC
Q 010642 287 DQAYQLITSM 296 (505)
Q Consensus 287 ~~A~~~~~~~ 296 (505)
++|.++....
T Consensus 1043 ~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1043 EEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHhc
Confidence 6666665554
No 255
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.79 E-value=0.53 Score=36.93 Aligned_cols=90 Identities=13% Similarity=0.049 Sum_probs=58.0
Q ss_pred HHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC----CCCCCHH---HHHHHHHHHHhc
Q 010642 243 ACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM----GVKPDST---IWRTLLGACRIH 315 (505)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~---~~~~ll~~~~~~ 315 (505)
+.+..|+++.|++.|.+... -.+.....||.-..++.-.|+.++|++-+++. |-+ ... .|-.-...|+..
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 45566777777777777664 33345667777777777777777777776665 222 111 222233457778
Q ss_pred CchhHHHHHHHHHHHhcCCC
Q 010642 316 KHVTLGERVIEHLIELKAQE 335 (505)
Q Consensus 316 g~~~~a~~~~~~~~~~~~~~ 335 (505)
|+.+.|..-|+..-+++.+-
T Consensus 129 g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred CchHHHHHhHHHHHHhCCHH
Confidence 88888888888888877543
No 256
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.77 E-value=2.4 Score=34.19 Aligned_cols=56 Identities=20% Similarity=0.183 Sum_probs=28.1
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHhhh
Q 010642 208 GLAMNGHGRDAIESFGAMQRAGVF--PDDQTFTGVLSACSHCGLVDEGMMFLDRMSKD 263 (505)
Q Consensus 208 ~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (505)
...+.|++++|.+.|+.+...-.. -....-..++.++.+.+++++|...+++.++-
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 344555566666666555543111 01233444555555566666666555555554
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=5.3 Score=36.45 Aligned_cols=141 Identities=13% Similarity=0.101 Sum_probs=76.1
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChH
Q 010642 208 GLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLD 287 (505)
Q Consensus 208 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 287 (505)
.....|+..+|..+|......... +...-..+..++...|+.+.|..++..+..+ --.........-|..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCC
Confidence 445567777777777766654222 2334455666777777777777777766442 10111111122344455555555
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc--CCCCchHHHHHHHHHhCC
Q 010642 288 QAYQLITSMGVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELK--AQESGDYVLLLNLYSSVG 350 (505)
Q Consensus 288 ~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 350 (505)
+...+-.+..-.| |...--.+...+...|+.+.|...+-.+++.+ -.+...-..|+..+.-.|
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 4445544443344 44444455566666777777766666655543 333445556666665555
No 258
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.70 E-value=0.55 Score=42.08 Aligned_cols=100 Identities=11% Similarity=0.127 Sum_probs=75.6
Q ss_pred HHHHHHHhcCC--CCChhHHHHHHHHHHHC-----CChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhcc-------
Q 010642 82 FEACKLFDEIP--QRDTVAWNVLISCYIRN-----QRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLG------- 147 (505)
Q Consensus 82 ~~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~------- 147 (505)
-..++.|...+ ++|-.+|-+.+..+... +..+-....++.|.. .|+.-|..+|..|++.+-+-.
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e--yGVerDl~vYk~LlnvfPKgkfiP~nvf 128 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE--YGVERDLDVYKGLLNVFPKGKFIPQNVF 128 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH--hcchhhHHHHHHHHHhCcccccccHHHH
Confidence 34456677666 57888888888777653 455656667788888 899999999999998764432
Q ss_pred ---------ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 010642 148 ---------ALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGS 183 (505)
Q Consensus 148 ---------~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~ 183 (505)
+-+-+..++++|..+|+-||..+-..|++++.+.|-
T Consensus 129 Q~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 129 QKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 224577888999999999999999999999887764
No 259
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.69 E-value=4.9 Score=35.88 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=45.0
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHhcCCCCc---hHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 308 LLGACRIHKHVTLGERVIEHLIELKAQESG---DYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 308 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
+..-|.+.|.+..|..-++++++.-|..+. .+..|..+|...|..++|.+.-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 345688999999999999999998766554 455678899999999999888655543
No 260
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.67 E-value=1.7 Score=39.13 Aligned_cols=95 Identities=17% Similarity=0.168 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCc-chHHHHH
Q 010642 201 SWSAMISGLAMNGHGRDAIESFGAMQRAGVFP--DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNI-HHYGCVV 277 (505)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li 277 (505)
.|+.-+..| +.|++.+|...|....+....- ....+-.|..++...|+++.|..+|..+.+.++-.|.. ..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 477665544 5677888888888888753211 12344558888888888888888888888876666653 6677777
Q ss_pred HHHHhcCChHHHHHHHHHC
Q 010642 278 DLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~ 296 (505)
....+.|+.++|...|++.
T Consensus 223 ~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 223 VSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHhcCHHHHHHHHHHH
Confidence 8888888888888888877
No 261
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.95 E-value=9.4 Score=36.97 Aligned_cols=132 Identities=12% Similarity=0.069 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcch-HHHH
Q 010642 199 VVSWSAMISGLAMNGHGRDAIESFGAMQRAG-VFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHH-YGCV 276 (505)
Q Consensus 199 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~l 276 (505)
...|-..+++-.+..-.+.|..+|-+..+.| +.++...+++++..++ .|+...|..+|+.-...+ ||... -+-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHH
Confidence 3445556666666666777777777777776 5566667777776554 466667777777655432 33322 2455
Q ss_pred HHHHHhcCChHHHHHHHHHC--CCCCC--HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 010642 277 VDLLGRAGLLDQAYQLITSM--GVKPD--STIWRTLLGACRIHKHVTLGERVIEHLIELKAQ 334 (505)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 334 (505)
+.-+.+.++-+.|..+|+.. .+..+ ...|..+|.--..-|+...+..+-+++.+.-|.
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 56666777777777777754 22222 446777777666777777777666666666654
No 262
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.94 E-value=4.9 Score=33.64 Aligned_cols=134 Identities=14% Similarity=0.171 Sum_probs=86.8
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhC-CCHHHHHHHHhcCC
Q 010642 15 FYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLD-SQLMTTLMDLYSTF-EKSFEACKLFDEIP 92 (505)
Q Consensus 15 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~-g~~~~A~~~~~~~~ 92 (505)
++.++.+.+.+++|+...+..+++.+.+.|.+..-.++ +..++-+| ..+-..|++.-.+. .-..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 45666777889999999999999999999987665554 34444444 44444444332211 11345666666654
Q ss_pred CCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHc
Q 010642 93 QRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEH 162 (505)
Q Consensus 93 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 162 (505)
..+..++..+...|++-+|+++.+..... ..+ .-..++.+..+.+|...--.++....+.
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~-~~~-----~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV-DSV-----PARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc-ccC-----CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34667788999999999999999875330 122 2244667777777766666666655553
No 263
>PRK11906 transcriptional regulator; Provisional
Probab=92.86 E-value=2.3 Score=41.41 Aligned_cols=77 Identities=9% Similarity=0.016 Sum_probs=48.3
Q ss_pred HHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 287 DQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 287 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
.+|.++.++. .+.| |......+..+....++++.|...|++...+.|+...+|........-.|+.++|.+.+++-.
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3445555444 3333 455555555555566667777777777777777777777777777777777777777666643
No 264
>PRK11906 transcriptional regulator; Provisional
Probab=92.85 E-value=4.9 Score=39.25 Aligned_cols=158 Identities=10% Similarity=0.041 Sum_probs=104.6
Q ss_pred hHH--HHHHHHHHhCC-----ChHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHhc---------cCCHHHHHHHHHHHh
Q 010642 200 VSW--SAMISGLAMNG-----HGRDAIESFGAMQR-AGVFPDD-QTFTGVLSACSH---------CGLVDEGMMFLDRMS 261 (505)
Q Consensus 200 ~~~--~~li~~~~~~g-----~~~~A~~~~~~m~~-~g~~p~~-~t~~~ll~~~~~---------~g~~~~a~~~~~~~~ 261 (505)
..| ..++.+..... ..+.|+.+|.+... ....|+. ..|..+..++.. ..+..+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 567 66666655422 24678889999882 2356654 334333333221 234556667766666
Q ss_pred hhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCch-
Q 010642 262 KDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDS-TIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGD- 338 (505)
Q Consensus 262 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~- 338 (505)
+ --+-|......+..++.-.++++.|..+|++. .+.||. .+|....-.+.-.|+.++|.+.+++..++.|.....
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 5 22345666667777778888899999999998 777874 466666666778899999999999999999875432
Q ss_pred -HHHHHHHHHhCCCHHHHHHHHH
Q 010642 339 -YVLLLNLYSSVGDWEKVKELRE 360 (505)
Q Consensus 339 -~~~l~~~~~~~g~~~~a~~~~~ 360 (505)
....+++|...+ .++|.+++-
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHHh
Confidence 334455676554 677777763
No 265
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.81 E-value=0.64 Score=42.33 Aligned_cols=63 Identities=17% Similarity=0.142 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 302 STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 302 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
..++..++..+...|+++.+...++++...+|-+...|..++.+|.+.|+...|+..|+.+.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 345666778888889999999999999999999999999999999999999999999998865
No 266
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.45 E-value=4.5 Score=32.05 Aligned_cols=136 Identities=11% Similarity=0.146 Sum_probs=77.3
Q ss_pred HhcCCHHHHHHHHhcCCC-CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010642 179 SKCGSLGMAFEVFKGMPE-KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFL 257 (505)
Q Consensus 179 ~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 257 (505)
.-.|.+++..++..+... .+..-+|-+|.-....-+-+-..+.++.+- --.|. ...|++......+
T Consensus 13 ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIG---kiFDi----------s~C~NlKrVi~C~ 79 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIG---KIFDI----------SKCGNLKRVIECY 79 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHG---GGS-G----------GG-S-THHHHHHH
T ss_pred HHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHh---hhcCc----------hhhcchHHHHHHH
Confidence 346777888888776653 344556655554444444444444444432 12222 2233333333333
Q ss_pred HHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 010642 258 DRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM--GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKA 333 (505)
Q Consensus 258 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 333 (505)
-.+- .+......-++.+...|+-+.-.+++..+ .-+|++...-.+..+|.+.|+..++..++.++.+.+.
T Consensus 80 ~~~n------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 80 AKRN------KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHTT---------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHhc------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3221 13445556677888899999988888887 3467788888899999999999999999998887763
No 267
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.42 E-value=0.34 Score=28.03 Aligned_cols=32 Identities=13% Similarity=0.019 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 010642 303 TIWRTLLGACRIHKHVTLGERVIEHLIELKAQ 334 (505)
Q Consensus 303 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 334 (505)
.+|..+...+...|++++|+..++++++++|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666777777777777777777777777664
No 268
>PRK09687 putative lyase; Provisional
Probab=92.35 E-value=9.2 Score=35.37 Aligned_cols=235 Identities=10% Similarity=0.006 Sum_probs=115.3
Q ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCCh----hHHHHHHHHchhccCCCCCCHHHHH
Q 010642 62 QLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRT----RDALCLFDNLNREESGCKPDDVTCL 137 (505)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~~~pd~~t~~ 137 (505)
.+|..+....+..+...|..+-...+..-+..+|...-...+.++.+.|+. .+++.++..+.. -.||...-.
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~----~D~d~~VR~ 109 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL----EDKSACVRA 109 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh----cCCCHHHHH
Confidence 345556666666666666543333333333445666666666666666653 356666665522 235555555
Q ss_pred HHHHHHHhccChHH--HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCC-C
Q 010642 138 LVLQACAHLGALEF--GEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNG-H 214 (505)
Q Consensus 138 ~ll~~~~~~~~~~~--a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g-~ 214 (505)
..+.++...+.... .......+...-..++..+-...+.++.+.|+.+....+..-+..+|...-...+.++.+.+ .
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~ 189 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD 189 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC
Confidence 55555554432110 11122222222223455666666677777666444444444444555555444555555442 2
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHH
Q 010642 215 GRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLIT 294 (505)
Q Consensus 215 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 294 (505)
..++...+..+.. .+|...-...+.++.+.|+. .+...+-...+. + + .....+.+++..|.. +|...+.
T Consensus 190 ~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~-~---~--~~~~a~~ALg~ig~~-~a~p~L~ 258 (280)
T PRK09687 190 NPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKK-G---T--VGDLIIEAAGELGDK-TLLPVLD 258 (280)
T ss_pred CHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcC-C---c--hHHHHHHHHHhcCCH-hHHHHHH
Confidence 3455555555553 23555555566666666663 344444433332 1 1 223455566666664 4555555
Q ss_pred HC-CCCCCHHHHHHHHHH
Q 010642 295 SM-GVKPDSTIWRTLLGA 311 (505)
Q Consensus 295 ~~-~~~p~~~~~~~ll~~ 311 (505)
++ .-.||..+-...+.+
T Consensus 259 ~l~~~~~d~~v~~~a~~a 276 (280)
T PRK09687 259 TLLYKFDDNEIITKAIDK 276 (280)
T ss_pred HHHhhCCChhHHHHHHHH
Confidence 54 334455444444433
No 269
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.10 E-value=0.55 Score=26.98 Aligned_cols=31 Identities=19% Similarity=0.149 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 010642 304 IWRTLLGACRIHKHVTLGERVIEHLIELKAQ 334 (505)
Q Consensus 304 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 334 (505)
.|..+...+...|++++|++.+++..++.|.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4555666667777777777777777776664
No 270
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.01 E-value=4.8 Score=37.46 Aligned_cols=61 Identities=13% Similarity=0.224 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCC--HHHHHHHHHHHhhhcCCcCCcchHHHHH
Q 010642 216 RDAIESFGAMQRAGVFPDDQ--TFTGVLSACSHCGL--VDEGMMFLDRMSKDFGILPNIHHYGCVV 277 (505)
Q Consensus 216 ~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li 277 (505)
+.+..+|+.+.+.|+..+.. ....++..+..... +.++..+++.+.+. ++++...+|..+.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lG 224 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHH
Confidence 56677778888777665442 33344433332222 44778888888886 8888888876554
No 271
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.90 E-value=7.9 Score=33.64 Aligned_cols=162 Identities=15% Similarity=0.078 Sum_probs=88.8
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHH
Q 010642 199 VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVD 278 (505)
Q Consensus 199 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 278 (505)
+..||-+.--+...|+++.|.+.|+...+....-+....|.-| ++--.|++.-|.+-+...-+...-.|-...|--++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~- 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN- 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-
Confidence 4567777777778888888888888777643322222222222 33445777777665555543212222222222222
Q ss_pred HHHhcCChHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC-------CchHHHHHHHHHhCC
Q 010642 279 LLGRAGLLDQAYQLI-TSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQE-------SGDYVLLLNLYSSVG 350 (505)
Q Consensus 279 ~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g 350 (505)
-+.-++.+|..-+ ++. ...|..-|...|..+.- |+.. .+.+++++.+...++ ..+|..|..-|...|
T Consensus 177 --E~k~dP~~A~tnL~qR~-~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 177 --EQKLDPKQAKTNLKQRA-EKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred --HhhCCHHHHHHHHHHHH-HhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 1233455554433 333 12345556555544322 2221 123334443333322 358889999999999
Q ss_pred CHHHHHHHHHHHHhCCC
Q 010642 351 DWEKVKELREFMNEKGL 367 (505)
Q Consensus 351 ~~~~a~~~~~~m~~~~~ 367 (505)
+.++|..+|+-....++
T Consensus 252 ~~~~A~~LfKLaiannV 268 (297)
T COG4785 252 DLDEATALFKLAVANNV 268 (297)
T ss_pred cHHHHHHHHHHHHHHhH
Confidence 99999999998776655
No 272
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.77 E-value=11 Score=34.92 Aligned_cols=60 Identities=17% Similarity=0.088 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhccChH---HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 010642 135 TCLLVLQACAHLGALE---FGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP 195 (505)
Q Consensus 135 t~~~ll~~~~~~~~~~---~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 195 (505)
++..++.++...+..+ +|..+.+.+... .+..+.++-.-+..+.+.++.+.+.+++.+|.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 3444555555554433 334444444322 22334444444555555566666666666554
No 273
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.46 E-value=4 Score=33.99 Aligned_cols=85 Identities=15% Similarity=-0.022 Sum_probs=43.0
Q ss_pred HHhcCChHHHHHHHHHC-CCCCCHHHHHH---HH--HHHHhcCchhHHHHHHHHHHHhc-CCCCchHHHHHHHHHhCCCH
Q 010642 280 LGRAGLLDQAYQLITSM-GVKPDSTIWRT---LL--GACRIHKHVTLGERVIEHLIELK-AQESGDYVLLLNLYSSVGDW 352 (505)
Q Consensus 280 ~~~~g~~~~A~~~~~~~-~~~p~~~~~~~---ll--~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 352 (505)
....|+...|...|.++ ...|.+....- |- -.+..+|.++....-.+.+...+ |-....-..|.-+-.+.|++
T Consensus 104 ~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~ 183 (221)
T COG4649 104 LAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDF 183 (221)
T ss_pred HhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccch
Confidence 44556666666666666 11222222211 11 12345566655554444443322 32333444666666677777
Q ss_pred HHHHHHHHHHHh
Q 010642 353 EKVKELREFMNE 364 (505)
Q Consensus 353 ~~a~~~~~~m~~ 364 (505)
..|.+.|..+..
T Consensus 184 a~A~~~F~qia~ 195 (221)
T COG4649 184 AKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHHHHc
Confidence 777777776654
No 274
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.30 E-value=0.5 Score=27.89 Aligned_cols=26 Identities=31% Similarity=0.294 Sum_probs=20.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 338 DYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 338 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
+|..|..+|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788889999999999999998844
No 275
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.08 E-value=8.2 Score=35.97 Aligned_cols=63 Identities=10% Similarity=0.214 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cC----CHHHHHHHHHHHhhhcCCcC--CcchHHHHH
Q 010642 215 GRDAIESFGAMQRAGVFPDDQTFTGVLSACSH--CG----LVDEGMMFLDRMSKDFGILP--NIHHYGCVV 277 (505)
Q Consensus 215 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~g----~~~~a~~~~~~~~~~~~~~p--~~~~~~~li 277 (505)
+++.+.+++.|.+.|++-+..+|.+....... .. ...+|..+|+.|.+.+.+-. +...+..|+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lL 148 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALL 148 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHH
Confidence 34567788899999998888887764333322 22 24678899999998765533 333444443
No 276
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.04 E-value=16 Score=35.51 Aligned_cols=126 Identities=17% Similarity=0.173 Sum_probs=84.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhhcC-CcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHHHH-HHHHHHH
Q 010642 236 TFTGVLSACSHCGLVDEGMMFLDRMSKDFG-ILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDSTIW-RTLLGAC 312 (505)
Q Consensus 236 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~ll~~~ 312 (505)
.|...+.+..+..-++.|..+|-+..+. + +.+++..+++++.-++ .|+..-|..+|+-- ...||...| +..+.-+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4555666666667778888888888876 5 5677888888887655 46777788888754 334554433 4455566
Q ss_pred HhcCchhHHHHHHHHHHHhcCCC--CchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 313 RIHKHVTLGERVIEHLIELKAQE--SGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
...++-+.|..+|+...+.-..+ ...|..++.--..-|+...+..+-++|.
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 67788888888888655433222 4577777777777777777766655554
No 277
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.95 E-value=0.39 Score=27.96 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=22.1
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 010642 156 HRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAF 188 (505)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~ 188 (505)
++++++.. |.+..+|+.|...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34445544 567777888888888888887775
No 278
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.92 E-value=2.5 Score=35.12 Aligned_cols=50 Identities=12% Similarity=-0.001 Sum_probs=24.2
Q ss_pred HhcCCHHHHHHHHhcCCCC-Ch---hHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 010642 179 SKCGSLGMAFEVFKGMPEK-DV---VSWSAMISGLAMNGHGRDAIESFGAMQRA 228 (505)
Q Consensus 179 ~~~g~~~~A~~~~~~m~~~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 228 (505)
...|.+++...-.+-+..+ ++ ..-.+|.-+-.+.|++.+|.+.|.++...
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 4455555555555444321 11 12334444445556666666666655543
No 279
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.85 E-value=0.98 Score=28.05 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=12.1
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHchh
Q 010642 99 WNVLISCYIRNQRTRDALCLFDNLNR 124 (505)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~ 124 (505)
|..+...|.+.|++++|.++|++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444444444444444444443
No 280
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.79 E-value=13 Score=33.96 Aligned_cols=56 Identities=13% Similarity=0.016 Sum_probs=50.8
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 308 LLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 308 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
....|...|.+.+|.++.++.+..+|-+...+..|+..|+..|+--.|.+-++++.
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 33678999999999999999999999999999999999999999888888888774
No 281
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.65 E-value=2.8 Score=38.73 Aligned_cols=159 Identities=13% Similarity=0.023 Sum_probs=116.5
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHH----HHHHhcCCh
Q 010642 211 MNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVV----DLLGRAGLL 286 (505)
Q Consensus 211 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li----~~~~~~g~~ 286 (505)
-.|+..+|-..++++.+. .+.|...+...=.+|...|+.+.-...++++.. ...|+...|.-+= -++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888888899998875 455777888888899999999999999999885 4567765554433 345589999
Q ss_pred HHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC----CchHHHHHHHHHhCCCHHHHHHHHH
Q 010642 287 DQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQE----SGDYVLLLNLYSSVGDWEKVKELRE 360 (505)
Q Consensus 287 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~ 360 (505)
++|++.-++. .++| |.-.-.++...+-..|+..++.++..+-...=... ...|-...-.+...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999988 6665 44455667777888899999988766644322211 1234456667788899999999999
Q ss_pred HHHhCCCCCCCc
Q 010642 361 FMNEKGLQTTPG 372 (505)
Q Consensus 361 ~m~~~~~~~~~~ 372 (505)
.=.-..+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 765555555444
No 282
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.51 E-value=0.54 Score=38.42 Aligned_cols=53 Identities=17% Similarity=0.245 Sum_probs=28.4
Q ss_pred cccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHH
Q 010642 2 VRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHA 54 (505)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 54 (505)
|+.+.+++.+.....+++.+...+...+....+.++..|++.++.+....+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44455556666666666666655444445555666666666655555444443
No 283
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.48 E-value=5.7 Score=37.27 Aligned_cols=218 Identities=14% Similarity=0.050 Sum_probs=121.3
Q ss_pred cCCcHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhCCCHHHHHHH-------HhcCCCC--ChhHHHHHHHHHHHCCC
Q 010642 43 FCSLMGGLQIHARVLRDG--YQLDSQLMTTLMDLYSTFEKSFEACKL-------FDEIPQR--DTVAWNVLISCYIRNQR 111 (505)
Q Consensus 43 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~-------~~~~~~~--~~~~~~~li~~~~~~g~ 111 (505)
..+.+++++.+.+.+..- ....-.++..+..+.++.|.+++++.. +....+. --.+|-.+..++-+.-+
T Consensus 19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~ 98 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCE 98 (518)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555443321 111223455555666666666555432 1111111 12456666677766667
Q ss_pred hhHHHHHHHHchhccCCCCCC---HHHHHHHHHHHHhccChHHHHHHHHHHHHcC-----CCCchhHHHHHHHHHHhcCC
Q 010642 112 TRDALCLFDNLNREESGCKPD---DVTCLLVLQACAHLGALEFGEKIHRYISEHG-----YGSKMNLCNSLIAMYSKCGS 183 (505)
Q Consensus 112 ~~~A~~~~~~m~~~~~~~~pd---~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~-----~~~~~~~~~~l~~~y~~~g~ 183 (505)
+.+++.+-..-... .|..|. .....++..+....+.++++.+.|+.+.+.. -.....++..|...|.+..+
T Consensus 99 f~kt~~y~k~~l~l-pgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 99 FHKTISYCKTCLGL-PGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred hhhHHHHHHHHhcC-CCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 77776665544321 233331 1233456667777778888888888776532 12235678888888998888
Q ss_pred HHHHHHHHhcC-------CCCChh------HHHHHHHHHHhCCChHHHHHHHHHHH----HCCCCCCH-HHHHHHHHHHh
Q 010642 184 LGMAFEVFKGM-------PEKDVV------SWSAMISGLAMNGHGRDAIESFGAMQ----RAGVFPDD-QTFTGVLSACS 245 (505)
Q Consensus 184 ~~~A~~~~~~m-------~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~-~t~~~ll~~~~ 245 (505)
+++|.-+..+. .-.|.. +.-.|..++-..|+..+|.+.-++.. ..|-+|.. .....+.+.|.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 88876554332 222332 12234456667777777777666543 33433221 23445666778
Q ss_pred ccCCHHHHHHHHHHHh
Q 010642 246 HCGLVDEGMMFLDRMS 261 (505)
Q Consensus 246 ~~g~~~~a~~~~~~~~ 261 (505)
..|+.+.|+.-|+...
T Consensus 258 ~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQAM 273 (518)
T ss_pred hcccHhHHHHHHHHHH
Confidence 8888888877776654
No 284
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.40 E-value=21 Score=37.58 Aligned_cols=179 Identities=13% Similarity=0.100 Sum_probs=115.0
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHcCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhC
Q 010642 135 TCLLVLQACAHLGALEFGEKIHRYISEHGYGSKM--NLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMN 212 (505)
Q Consensus 135 t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~--~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 212 (505)
+...-+....+...++.|..+-. ..+.+++. .+.....+-+.+.|++++|...|-+...--.. ...|.-|...
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLda 410 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDA 410 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCH
Confidence 45556677777777777766543 33433332 33445556667889999999888765421111 2245556666
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHH
Q 010642 213 GHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQL 292 (505)
Q Consensus 213 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 292 (505)
.+..+-..+++.+.+.|+. +...-..|+.+|.+.++.+.-.++.+.-.+ |.- ..-....+..+.+.+-+++|..+
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~--g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK--GEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC--cce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 6677777788888888876 344446688899999999887666554431 211 11245567778888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010642 293 ITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHL 328 (505)
Q Consensus 293 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 328 (505)
-.+.+. +......++ -..+++++|.+.++.+
T Consensus 486 A~k~~~--he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 486 ATKFKK--HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcc--CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 877654 344444443 4568899998887754
No 285
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.22 E-value=19 Score=35.06 Aligned_cols=219 Identities=11% Similarity=0.063 Sum_probs=125.3
Q ss_pred ChhHHHHHHHHchhccCCCCC----CHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHH-------HHHHHHH
Q 010642 111 RTRDALCLFDNLNREESGCKP----DDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCN-------SLIAMYS 179 (505)
Q Consensus 111 ~~~~A~~~~~~m~~~~~~~~p----d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~-------~l~~~y~ 179 (505)
+.+++..+-+.+.. ..+.+ =..+|..++..+.+.++...|.+.+..+.-. .|+..+.. .+.++.+
T Consensus 274 ~~e~~~~~ce~ia~--~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~ 349 (549)
T PF07079_consen 274 DPEQVGHFCEAIAS--SKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVC 349 (549)
T ss_pred ChHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHh
Confidence 55666555555543 22211 1357889999999999999999998877654 34333222 2233333
Q ss_pred hc----CCHHHHHHHHhcCCCCChhH---HHHHH---HHHHhCCC-hHHHHHHHHHHHHCCCCCCHHH-----HHHHHHH
Q 010642 180 KC----GSLGMAFEVFKGMPEKDVVS---WSAMI---SGLAMNGH-GRDAIESFGAMQRAGVFPDDQT-----FTGVLSA 243 (505)
Q Consensus 180 ~~----g~~~~A~~~~~~m~~~~~~~---~~~li---~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t-----~~~ll~~ 243 (505)
.. -+..+=..+++.+...|+.. -.-|+ .-+-+.|. -++|+++++...+ +.|...- +..+=.+
T Consensus 350 ~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~ 427 (549)
T PF07079_consen 350 EDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQA 427 (549)
T ss_pred cchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHH
Confidence 11 11222233444444333321 11122 23445666 7899999999887 3443322 2222223
Q ss_pred Hhc---cCCHHHHHHHHHHHhhhcCCcCCc----chHHHHHHH--HHhcCChHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 010642 244 CSH---CGLVDEGMMFLDRMSKDFGILPNI----HHYGCVVDL--LGRAGLLDQAYQLITSM-GVKPDSTIWRTLLGACR 313 (505)
Q Consensus 244 ~~~---~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~--~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~ 313 (505)
|.+ ...+.+-..+-+-+.+ -|++|-. ..-|.|.++ +...|++.++.-.-.-. .+.|++.+|+.+.-+..
T Consensus 428 Y~qaLs~~~~~rLlkLe~fi~e-~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~ 506 (549)
T PF07079_consen 428 YKQALSMHAIPRLLKLEDFITE-VGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLM 506 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-cCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 332 2334444444444444 4888743 345555554 45678888876554444 67899999998888888
Q ss_pred hcCchhHHHHHHHHHHHhcCCCCchHH
Q 010642 314 IHKHVTLGERVIEHLIELKAQESGDYV 340 (505)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~~~~ 340 (505)
...++++|..++..+ |++..++.
T Consensus 507 e~k~Y~eA~~~l~~L----P~n~~~~d 529 (549)
T PF07079_consen 507 ENKRYQEAWEYLQKL----PPNERMRD 529 (549)
T ss_pred HHhhHHHHHHHHHhC----CCchhhHH
Confidence 899999998887654 44555544
No 286
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.99 E-value=18 Score=34.53 Aligned_cols=66 Identities=12% Similarity=0.122 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcC----CCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELKA----QESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 301 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
...+|..+...+++.|+++.|...+.++.+..+ ..+.....-+......|+.++|...++...+..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 456888999999999999999999999887652 245566777888899999999999998887633
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.99 E-value=0.78 Score=27.04 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=13.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHH
Q 010642 202 WSAMISGLAMNGHGRDAIESFGAM 225 (505)
Q Consensus 202 ~~~li~~~~~~g~~~~A~~~~~~m 225 (505)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555666666666666666553
No 288
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.77 E-value=10 Score=31.33 Aligned_cols=88 Identities=19% Similarity=0.145 Sum_probs=49.1
Q ss_pred HHhccCCHHHHHHHHHHHhhhcCCcCCcch-HHHHHHHHHhcCChHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCchhH
Q 010642 243 ACSHCGLVDEGMMFLDRMSKDFGILPNIHH-YGCVVDLLGRAGLLDQAYQLITSM-GVKPDSTIWRTLLGACRIHKHVTL 320 (505)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~ 320 (505)
.-...++.+.+..++..+.- +.|.... -..-.-.+.+.|++.+|..+|+++ .-.|....-..|+..|....+-..
T Consensus 19 ~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 33456677777777777753 3443322 222233466778888888888887 333444444556655555444344
Q ss_pred HHHHHHHHHHhcC
Q 010642 321 GERVIEHLIELKA 333 (505)
Q Consensus 321 a~~~~~~~~~~~~ 333 (505)
=....+++.+.++
T Consensus 96 Wr~~A~evle~~~ 108 (160)
T PF09613_consen 96 WRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHhcCC
Confidence 4444455555443
No 289
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.76 E-value=8.5 Score=32.76 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCh------hHHHHHHHHHHhCCChHHHHHHHHHHH
Q 010642 170 LCNSLIAMYSKCGSLGMAFEVFKGMPEKDV------VSWSAMISGLAMNGHGRDAIESFGAMQ 226 (505)
Q Consensus 170 ~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~ 226 (505)
.+..+.+.|.+.|+.+.|.+.|.++.+... ..+-.+|......+++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455566666666666666666666554321 233444455555555555555555544
No 290
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.61 E-value=1.5 Score=37.29 Aligned_cols=87 Identities=14% Similarity=0.061 Sum_probs=66.0
Q ss_pred HHhcCChHHHHHHHHHC--CCCCC-----HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCH
Q 010642 280 LGRAGLLDQAYQLITSM--GVKPD-----STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDW 352 (505)
Q Consensus 280 ~~~~g~~~~A~~~~~~~--~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 352 (505)
+.+.|++++|..-|... -.++. ...|..-..++.+.+.++.|+.-..+.++++|....+...-..+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 55677777777777665 12221 234444556778899999999999999999988777777778899999999
Q ss_pred HHHHHHHHHHHhCC
Q 010642 353 EKVKELREFMNEKG 366 (505)
Q Consensus 353 ~~a~~~~~~m~~~~ 366 (505)
++|+.-|+++.+..
T Consensus 185 eealeDyKki~E~d 198 (271)
T KOG4234|consen 185 EEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999887643
No 291
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.28 E-value=3.3 Score=37.85 Aligned_cols=72 Identities=17% Similarity=0.178 Sum_probs=37.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC--------CCCCCHHHHHHH
Q 010642 237 FTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM--------GVKPDSTIWRTL 308 (505)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~l 308 (505)
+..++..+...|+.+.+...++++.. --+-+...|..++.+|.+.|+...|+..|+++ |+.|...++...
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34444555555555555555555553 22234445555555555555555555555444 556655555444
Q ss_pred HH
Q 010642 309 LG 310 (505)
Q Consensus 309 l~ 310 (505)
..
T Consensus 234 ~~ 235 (280)
T COG3629 234 EE 235 (280)
T ss_pred HH
Confidence 33
No 292
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.97 E-value=4.6 Score=37.04 Aligned_cols=99 Identities=15% Similarity=0.159 Sum_probs=72.2
Q ss_pred hCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC-C--------ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCC
Q 010642 59 DGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ-R--------DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGC 129 (505)
Q Consensus 59 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 129 (505)
.|.+....+...++..-....++++++..+-.+.. + ..++|- +.+ -.-++++++.++..=.+ .|+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~i---rll-lky~pq~~i~~l~npIq--YGi 131 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWI---RLL-LKYDPQKAIYTLVNPIQ--YGI 131 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHH---HHH-HccChHHHHHHHhCcch--hcc
Confidence 34445555666666666667788888887766653 1 223333 322 23467799999988888 899
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcC
Q 010642 130 KPDDVTCLLVLQACAHLGALEFGEKIHRYISEHG 163 (505)
Q Consensus 130 ~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~ 163 (505)
-||.++++.++..+.+.+++..|.++...|+...
T Consensus 132 F~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 132 FPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred ccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888877654
No 293
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.97 E-value=19 Score=33.29 Aligned_cols=18 Identities=6% Similarity=0.030 Sum_probs=11.7
Q ss_pred HHCCChhHHHHHHHHchh
Q 010642 107 IRNQRTRDALCLFDNLNR 124 (505)
Q Consensus 107 ~~~g~~~~A~~~~~~m~~ 124 (505)
.+.|+.+.|..++.+...
T Consensus 4 ~~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhhCCHHHHHHHHHHhhh
Confidence 356667777777766654
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.94 E-value=12 Score=30.96 Aligned_cols=52 Identities=13% Similarity=-0.017 Sum_probs=25.8
Q ss_pred HhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 010642 144 AHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE 196 (505)
Q Consensus 144 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 196 (505)
...++.+.++.++.-+.-.. |..+..-..-...+.+.|++++|..+|+++.+
T Consensus 21 l~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 44455555555555554432 11222222233345556666666666666554
No 295
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.62 E-value=23 Score=33.83 Aligned_cols=66 Identities=12% Similarity=0.064 Sum_probs=43.0
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 010642 197 KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP---DDQTFTGVLSACSHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 197 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (505)
....+|..++....+.|+++.|...+.++...+..+ +......-+...-..|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344567777888888888888888888777643211 222333334455566777888887777766
No 296
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.37 E-value=35 Score=35.65 Aligned_cols=53 Identities=8% Similarity=-0.141 Sum_probs=35.0
Q ss_pred ccchhcCCchHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHccCCcHHHHHHHHHHH
Q 010642 3 RAYSMSSSPEEGFYLFEKMRQKRIPT---NPFACSFAIKCCMKFCSLMGGLQIHARVL 57 (505)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 57 (505)
.-+.+.+.+++|++.-+.-... .| -.......+..+...|++++|-...-.|.
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh
Confidence 3456778899999887765543 33 23456667777777788887766655543
No 297
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.36 E-value=0.9 Score=26.14 Aligned_cols=28 Identities=18% Similarity=0.180 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHchh
Q 010642 97 VAWNVLISCYIRNQRTRDALCLFDNLNR 124 (505)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 124 (505)
.+|..+...|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566666667777777777777766654
No 298
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.90 E-value=3.7 Score=30.46 Aligned_cols=47 Identities=21% Similarity=0.389 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHH
Q 010642 297 GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLL 343 (505)
Q Consensus 297 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 343 (505)
.+-|++.+..+-+++|++.+++..|.++++-++..-..+...|-.++
T Consensus 37 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 37 DLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 67788888888889999999999999988887755443444555443
No 299
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.89 E-value=5.4 Score=33.96 Aligned_cols=94 Identities=17% Similarity=0.128 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC--HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCC---Cc----h
Q 010642 98 AWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD--DVTCLLVLQACAHLGALEFGEKIHRYISEHGYG---SK----M 168 (505)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd--~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~---~~----~ 168 (505)
.+..+..-|.+.|+.++|++.|.++.. ....|. ...+-.+++.+...+++..+.....++...--. .+ .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~--~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARD--YCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhh--hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 344555555555555555555555544 222222 223444555555555655555555444432111 11 1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 010642 169 NLCNSLIAMYSKCGSLGMAFEVFKGMP 195 (505)
Q Consensus 169 ~~~~~l~~~y~~~g~~~~A~~~~~~m~ 195 (505)
.+|..|.. ...+++..|-+.|-...
T Consensus 116 k~~~gL~~--l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLAN--LAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHH--HHhchHHHHHHHHHccC
Confidence 22333322 33567777776665553
No 300
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.78 E-value=1.4 Score=25.28 Aligned_cols=30 Identities=13% Similarity=0.042 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 010642 304 IWRTLLGACRIHKHVTLGERVIEHLIELKA 333 (505)
Q Consensus 304 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 333 (505)
+|..+...+...|++++|...|++..+..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566666777777777777777776665
No 301
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.74 E-value=3.7 Score=30.77 Aligned_cols=47 Identities=23% Similarity=0.403 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHH
Q 010642 297 GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLL 343 (505)
Q Consensus 297 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 343 (505)
.+-|++.+..+.+.+|++.+++..|.++++-++..-.+....|-.++
T Consensus 40 DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 40 DLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp SB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 67789999999999999999999999999988876654444666554
No 302
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.27 E-value=5.3 Score=36.67 Aligned_cols=98 Identities=13% Similarity=0.169 Sum_probs=72.8
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-C--------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 010642 162 HGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE-K--------DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP 232 (505)
Q Consensus 162 ~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 232 (505)
.|.+....+...++..-....++++++..+-++.. + ...+|-.++. .=++++++-++..=.+.|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhcccc
Confidence 35555666667777777777888888888776652 2 2334443333 335678888888888899999
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHhhh
Q 010642 233 DDQTFTGVLSACSHCGLVDEGMMFLDRMSKD 263 (505)
Q Consensus 233 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (505)
|.+|++.+++.+.+.+++.+|.++...|...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999998888777653
No 303
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=86.75 E-value=78 Score=37.87 Aligned_cols=306 Identities=12% Similarity=0.052 Sum_probs=162.3
Q ss_pred HHHccCCcHHHHHHHHHH----HHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHh-cCCCCChhHHHHHHHHHHHCCChh
Q 010642 39 CCMKFCSLMGGLQIHARV----LRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFD-EIPQRDTVAWNVLISCYIRNQRTR 113 (505)
Q Consensus 39 ~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~li~~~~~~g~~~ 113 (505)
+-.+.+.+.+|...++.- .+. ......+-.+...|+.-++++....+.. +...++ ....|......|+++
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWA 1466 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHH
Confidence 444556677777776662 111 1122334445557777777777666665 333333 233455567788888
Q ss_pred HHHHHHHHchhccCCCCCC-HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHH-HHHHHHHhcCCHHHHHHHH
Q 010642 114 DALCLFDNLNREESGCKPD-DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCN-SLIAMYSKCGSLGMAFEVF 191 (505)
Q Consensus 114 ~A~~~~~~m~~~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~-~l~~~y~~~g~~~~A~~~~ 191 (505)
.|...|+.+.+ ..|+ ..+++-++..-...+.++......+-.... ..+....++ .=+.+--+.+++|......
T Consensus 1467 da~~Cye~~~q----~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1467 DAAACYERLIQ----KDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHHHHhhc----CCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 88888888855 4455 566776666666666666665544433332 233333333 3345556777777776666
Q ss_pred hcCCCCChhHHHHH--HHHHHhCCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH-------
Q 010642 192 KGMPEKDVVSWSAM--ISGLAMNGH--GRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRM------- 260 (505)
Q Consensus 192 ~~m~~~~~~~~~~l--i~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~------- 260 (505)
. ..+..+|... .....+..+ .-.-.+..+-+++.-+.| +.+|+..|.+..+.++.-.+
T Consensus 1542 ~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred h---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 5 4556666554 222222221 111122333333221111 12222222222222211111
Q ss_pred ---hhhcCCcCCcch------HHHH---HHHHHhcCChHHHH-HHHHHCCCCC-----CHHHHHHHHHHHHhcCchhHHH
Q 010642 261 ---SKDFGILPNIHH------YGCV---VDLLGRAGLLDQAY-QLITSMGVKP-----DSTIWRTLLGACRIHKHVTLGE 322 (505)
Q Consensus 261 ---~~~~~~~p~~~~------~~~l---i~~~~~~g~~~~A~-~~~~~~~~~p-----~~~~~~~ll~~~~~~g~~~~a~ 322 (505)
....+..++..+ |-.- .+.+.+....--|. +.+.....+| -..+|-...+.+++.|+++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 011122332211 1111 11222211111111 1111111122 2457888889999999999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 010642 323 RVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGL 367 (505)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 367 (505)
..+-.+.+..+ +..+.-.+......|+...|..++++..+...
T Consensus 1691 nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1691 NALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 98888877774 46888999999999999999999998876554
No 304
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=86.75 E-value=38 Score=34.26 Aligned_cols=120 Identities=8% Similarity=-0.007 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-----CCCCCHHHHHHH
Q 010642 234 DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-----GVKPDSTIWRTL 308 (505)
Q Consensus 234 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l 308 (505)
..+|..-+.--...|+.+...-+|++..- .+.-=...|-..+.-....|+.+-|..++... +-.|....+.+.
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35677777777778888888888887754 22222344555555556668888887777665 333444444333
Q ss_pred HHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHH
Q 010642 309 LGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKE 357 (505)
Q Consensus 309 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 357 (505)
+ +-..|++..|..+++.+.+.-|.....-..-++...+.|+.+.+..
T Consensus 375 f--~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 375 F--EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred H--HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 3 3356788888888888877765444444455666677788877773
No 305
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.50 E-value=22 Score=31.37 Aligned_cols=53 Identities=11% Similarity=0.075 Sum_probs=31.3
Q ss_pred CChHHHHHHHHHC-----CCCCCHHHHHHHH---HHHHhcCchhHHHHHHHHHHHhcCCCC
Q 010642 284 GLLDQAYQLITSM-----GVKPDSTIWRTLL---GACRIHKHVTLGERVIEHLIELKAQES 336 (505)
Q Consensus 284 g~~~~A~~~~~~~-----~~~p~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~~~~~ 336 (505)
.++++|+..++.. +-..+...-..++ .--...+++..|+.+++++.....+++
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 4555666666555 2222222223333 334567899999999999887665443
No 306
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.00 E-value=17 Score=29.59 Aligned_cols=67 Identities=6% Similarity=-0.070 Sum_probs=36.0
Q ss_pred HhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh-hHHHHHHHHHHh
Q 010642 144 AHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDV-VSWSAMISGLAM 211 (505)
Q Consensus 144 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~li~~~~~ 211 (505)
...++.+.+..++..+.-.. |....+-..-...+...|++++|.++|+++.+... ..|..-+.++|-
T Consensus 21 L~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 34566666666666665432 22222222333445667777777777777765442 244444444443
No 307
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.62 E-value=4.3 Score=30.46 Aligned_cols=60 Identities=12% Similarity=0.271 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHH
Q 010642 217 DAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVD 278 (505)
Q Consensus 217 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 278 (505)
+..+-++.+....+.|+.....+.+.||.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5556666666777889999999999999999999999999999887534 33336776664
No 308
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.44 E-value=6.7 Score=31.89 Aligned_cols=51 Identities=8% Similarity=0.029 Sum_probs=25.0
Q ss_pred cCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 315 HKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 315 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
.++.+++..++..+.-+.|..+..-..-...+...|+|++|.++++.+.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 444455555555555555444444444444444555555555555554443
No 309
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.20 E-value=11 Score=37.89 Aligned_cols=104 Identities=19% Similarity=0.224 Sum_probs=51.3
Q ss_pred HhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010642 179 SKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLD 258 (505)
Q Consensus 179 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 258 (505)
.+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|..... |..|+-.+...|+.+.-..+-.
T Consensus 648 l~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred hhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 3456666665554433 2455566666666666666666666655443 3334444555555443333333
Q ss_pred HHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCC
Q 010642 259 RMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKP 300 (505)
Q Consensus 259 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 300 (505)
...+. |. -|. .+ -+|...|+++++.+++.+-+.-|
T Consensus 717 ~~~~~-g~-~N~-AF----~~~~l~g~~~~C~~lLi~t~r~p 751 (794)
T KOG0276|consen 717 LAKKQ-GK-NNL-AF----LAYFLSGDYEECLELLISTQRLP 751 (794)
T ss_pred HHHhh-cc-cch-HH----HHHHHcCCHHHHHHHHHhcCcCc
Confidence 33322 21 121 11 22445566666666665553333
No 310
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.85 E-value=30 Score=31.27 Aligned_cols=131 Identities=12% Similarity=0.074 Sum_probs=61.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHC---CCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCC----cCCcch
Q 010642 202 WSAMISGLAMNGHGRDAIESFGAMQRA---GVF--PDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGI----LPNIHH 272 (505)
Q Consensus 202 ~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~p~~~~ 272 (505)
...||..+.+.|++++..+.|.+|... -+. -+..+.++++...+...+.+.-..+++.......- ...-.+
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 334555556666666666655555421 111 12334555555555444444444444333321111 111223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHC--------CCC------CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 273 YGCVVDLLGRAGLLDQAYQLITSM--------GVK------PDSTIWRTLLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 273 ~~~li~~~~~~g~~~~A~~~~~~~--------~~~------p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
-+-|...|...|.+.+..++++++ |-. --..+|..=|..|...++-..-..++++.+...
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiK 221 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIK 221 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhh
Confidence 344555566666666666665555 100 012344445555666666666666666655544
No 311
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.80 E-value=2.4 Score=39.29 Aligned_cols=107 Identities=9% Similarity=0.006 Sum_probs=73.3
Q ss_pred HHHhccCCHHHHHHHHHHHhhhcCCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCch
Q 010642 242 SACSHCGLVDEGMMFLDRMSKDFGILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHV 318 (505)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 318 (505)
.-|.+.|.+++|+..|..... ..| +..++..-..+|.+..++..|+.--... .+.. -...|..-..+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 458899999999999998774 345 8888888888999999998887665554 2211 123454445555566788
Q ss_pred hHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHH
Q 010642 319 TLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKV 355 (505)
Q Consensus 319 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 355 (505)
.+|.+-++..+++.|.+.. |=..|.+.....++
T Consensus 182 ~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIE----LKKSLARINSLRER 214 (536)
T ss_pred HHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhh
Confidence 8888888999999887533 33344444444443
No 312
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.58 E-value=1.9 Score=24.62 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHchh
Q 010642 98 AWNVLISCYIRNQRTRDALCLFDNLNR 124 (505)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 124 (505)
.|..+...|.+.|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666666666666666666544
No 313
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.46 E-value=13 Score=27.62 Aligned_cols=63 Identities=13% Similarity=0.301 Sum_probs=47.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHH
Q 010642 214 HGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVD 278 (505)
Q Consensus 214 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 278 (505)
+.-++.+-++.+....+.|+.....+.+.||-+.+++..|.++|+.++.+.+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4456666777777778889999999999999999999999999998875423 23445666553
No 314
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.21 E-value=0.66 Score=37.91 Aligned_cols=87 Identities=10% Similarity=0.150 Sum_probs=62.9
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhH
Q 010642 35 FAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRD 114 (505)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 114 (505)
.++..+.+.+........++.+...+...+....+.|+..|++.++.+...++++.... .-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35666677788888888888888777667788999999999999888888888874433 333456666677777777
Q ss_pred HHHHHHHchh
Q 010642 115 ALCLFDNLNR 124 (505)
Q Consensus 115 A~~~~~~m~~ 124 (505)
|.-++.++..
T Consensus 89 a~~Ly~~~~~ 98 (143)
T PF00637_consen 89 AVYLYSKLGN 98 (143)
T ss_dssp HHHHHHCCTT
T ss_pred HHHHHHHccc
Confidence 7777776643
No 315
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.90 E-value=20 Score=35.11 Aligned_cols=126 Identities=12% Similarity=0.034 Sum_probs=81.1
Q ss_pred hccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCchhHHH
Q 010642 245 SHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM--GVKPDSTIWRTLLGACRIHKHVTLGE 322 (505)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~ 322 (505)
...|++-.|.+-+....+.+.-.|+.... ....+...|.++.+...+... -+.....+...++......|++++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 34566665554444444333444444333 333466788898888888776 22335667788888888888999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCc
Q 010642 323 RVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPG 372 (505)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 372 (505)
...+.|+..+..++.........--..|-++++.-.|+++...+-+.+.+
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g 427 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG 427 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc
Confidence 88888887775555544444444456677888888888887655444443
No 316
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.68 E-value=3.5 Score=23.17 Aligned_cols=27 Identities=11% Similarity=-0.023 Sum_probs=15.3
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHhcCC
Q 010642 308 LLGACRIHKHVTLGERVIEHLIELKAQ 334 (505)
Q Consensus 308 ll~~~~~~g~~~~a~~~~~~~~~~~~~ 334 (505)
+..++.+.|+.++|.+.++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 334455556666666666666655554
No 317
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.68 E-value=49 Score=32.91 Aligned_cols=174 Identities=13% Similarity=0.080 Sum_probs=115.5
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHH
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSL 174 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 174 (505)
|....-+++..+..+..+.-...+..+|.. +..+...|..++..|... .-+.-..+++++++..+ .|+.....|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~----~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLE----YGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHH----hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 334566778888888888888888888876 445777888888888877 55677788888888753 345556667
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC------CCh---hHHHHHHHHHHhCCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 010642 175 IAMYSKCGSLGMAFEVFKGMPE------KDV---VSWSAMISGLAMNGHGRDAIESFGAMQR-AGVFPDDQTFTGVLSAC 244 (505)
Q Consensus 175 ~~~y~~~g~~~~A~~~~~~m~~------~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~ 244 (505)
+..|-+ ++.+.+...|.++.. .+. ..|.-++..- ..+.+..+.+..++.. .|..--.+.+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 777766 788888887776542 121 2566555421 3455666666666653 34444556666677788
Q ss_pred hccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHH
Q 010642 245 SHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDL 279 (505)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 279 (505)
....++++|++++..+.+ ....|...-..++.-
T Consensus 216 s~~eN~~eai~Ilk~il~--~d~k~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILE--HDEKDVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhh--hcchhhhHHHHHHHH
Confidence 889999999999987766 233344443444443
No 318
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.64 E-value=34 Score=30.94 Aligned_cols=242 Identities=12% Similarity=0.146 Sum_probs=130.2
Q ss_pred CCHHHHHHHHhcCCC----C---ChhHHHHHHHHHHHCCChhHHHHHHHHchhc-cCCC--CCCHHHHHHHHHHHHhccC
Q 010642 79 EKSFEACKLFDEIPQ----R---DTVAWNVLISCYIRNQRTRDALCLFDNLNRE-ESGC--KPDDVTCLLVLQACAHLGA 148 (505)
Q Consensus 79 g~~~~A~~~~~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~--~pd~~t~~~ll~~~~~~~~ 148 (505)
.+.++|+.-|....+ + .-.+.-.+|..+.+.+++++.+..|.++..- .+.+ .-+..+.++++...+.+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 355566666655432 1 1223445667777777777777777666420 0111 1234456666666666666
Q ss_pred hHHHHHHHHHHHHc-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--------C-------ChhHHHHHHHH
Q 010642 149 LEFGEKIHRYISEH-----GYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE--------K-------DVVSWSAMISG 208 (505)
Q Consensus 149 ~~~a~~i~~~~~~~-----~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--------~-------~~~~~~~li~~ 208 (505)
.+.-...++.-++. +-..--.+-+.|...|...|.+.+-.++++++.+ . -...|..-|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 65555555433321 1111123345677888888888888888776642 1 13457777788
Q ss_pred HHhCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHh-----ccCCHHHHHHHHHHHhhhcCCcCCc-----chHHHHH
Q 010642 209 LAMNGHGRDAIESFGAMQRA-GVFPDDQTFTGVLSACS-----HCGLVDEGMMFLDRMSKDFGILPNI-----HHYGCVV 277 (505)
Q Consensus 209 ~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~-----~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li 277 (505)
|....+-.+-..+|++...- ..-|.+.. ..+|.-|. +.|.+++|..-|-+.-+.|.-.-++ --|..|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 88888777777788876532 23344433 34455553 4678887765444444333222222 2345555
Q ss_pred HHHHhcCCh----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHH
Q 010642 278 DLLGRAGLL----DQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIE 326 (505)
Q Consensus 278 ~~~~~~g~~----~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 326 (505)
.++.+.|-- ++|.- ..-.|.....+.|+.+|-. ++..+-++++.
T Consensus 280 NMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~ 327 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQN-NDIIEFERILK 327 (440)
T ss_pred HHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 666665421 11100 0223556677888888844 44444444443
No 319
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.19 E-value=17 Score=36.77 Aligned_cols=99 Identities=16% Similarity=0.057 Sum_probs=56.9
Q ss_pred HhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHH
Q 010642 76 STFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKI 155 (505)
Q Consensus 76 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i 155 (505)
.+.|+++.|.++..+. .+..-|..|..+..+.+++..|.+.|.+... |..|+-.+...|+.+....+
T Consensus 648 l~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----------~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD-----------LGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc-----------hhhhhhhhhhcCChhHHHHH
Confidence 3456666666554432 2455677777777777777777777766543 44555556666666555555
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 010642 156 HRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKG 193 (505)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 193 (505)
-....+.|. .|....+|...|+++++.+++..
T Consensus 715 a~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 715 ASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 555555541 22333445566666666666543
No 320
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.15 E-value=67 Score=34.06 Aligned_cols=51 Identities=14% Similarity=0.047 Sum_probs=33.5
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHH
Q 010642 308 LLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREF 361 (505)
Q Consensus 308 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 361 (505)
++..+.+..+.+.+..+.+.. ++.++..|..++.-+++.+..++-.++..+
T Consensus 711 l~~~~~q~~d~E~~it~~~~~---g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~ 761 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERL---GKEDPSLWLHALKYFVSEESIEDCYEIVYK 761 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHh---CccChHHHHHHHHHHhhhcchhhHHHHHHH
Confidence 445566677777766665544 455678899999999888865554444333
No 321
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.11 E-value=2.7 Score=25.25 Aligned_cols=28 Identities=32% Similarity=0.307 Sum_probs=22.0
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 337 GDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 337 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3677888889999999999988887754
No 322
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.98 E-value=2.1 Score=23.01 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=17.5
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHH
Q 010642 338 DYVLLLNLYSSVGDWEKVKELRE 360 (505)
Q Consensus 338 ~~~~l~~~~~~~g~~~~a~~~~~ 360 (505)
....|..++...|++++|.++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45667788888888888887765
No 323
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.94 E-value=13 Score=32.11 Aligned_cols=42 Identities=17% Similarity=0.029 Sum_probs=18.4
Q ss_pred ccChHHHHHHHHHHHHc---CCCCchhHHHHHHHHHHhcCCHHHH
Q 010642 146 LGALEFGEKIHRYISEH---GYGSKMNLCNSLIAMYSKCGSLGMA 187 (505)
Q Consensus 146 ~~~~~~a~~i~~~~~~~---~~~~~~~~~~~l~~~y~~~g~~~~A 187 (505)
..+.+++.+++-...+. +-.+|+.++.+|+..|.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 33444444444444432 1133444444444444444444443
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.52 E-value=2.6 Score=25.34 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHchh
Q 010642 97 VAWNVLISCYIRNQRTRDALCLFDNLNR 124 (505)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 124 (505)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566666667777777777666666543
No 325
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.44 E-value=12 Score=32.23 Aligned_cols=74 Identities=14% Similarity=0.095 Sum_probs=48.3
Q ss_pred HccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCC-------CCChhHHHHHHHHHHHCCChh
Q 010642 41 MKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIP-------QRDTVAWNVLISCYIRNQRTR 113 (505)
Q Consensus 41 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~ 113 (505)
.+.|+ +.|++.|-.+...+.-.++....+|...|. ..+.++|+.++.+.. ..|+..+.+|++.|.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 44444 456666666666665556666777777666 455677776665543 246777888888888888887
Q ss_pred HHH
Q 010642 114 DAL 116 (505)
Q Consensus 114 ~A~ 116 (505)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 763
No 326
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.32 E-value=40 Score=30.91 Aligned_cols=68 Identities=18% Similarity=0.207 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCCCCHHHH
Q 010642 170 LCNSLIAMYSKCGSLGMAFEVFKGMPEK---DVVSWSAMISGLAMNGHGRDAIESFGAMQR-----AGVFPDDQTF 237 (505)
Q Consensus 170 ~~~~l~~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~ 237 (505)
+.+.....|..+|.+.+|.++-++...- +...|-.++..++..|+--.|.+.++.+.+ .|+..|...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 3455667888899999999888877643 456788888899999988888888877753 4666555443
No 327
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=81.70 E-value=12 Score=24.41 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=35.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCc
Q 010642 339 YVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGY 414 (505)
Q Consensus 339 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 414 (505)
...+.-++.+.|++++|.+..+.+.+. .|...++..+-..+.++|.+.|+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456788899999999999999988763 23444555666667777777763
No 328
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=81.15 E-value=6.9 Score=38.11 Aligned_cols=122 Identities=15% Similarity=0.132 Sum_probs=83.0
Q ss_pred HhCCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHH
Q 010642 210 AMNGHGRDAIE-SFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQ 288 (505)
Q Consensus 210 ~~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 288 (505)
...|+.-.|.+ ++.-+....-.|+.+.+.+.| ..+.|+++.+.+.+..... -+.....+..+++....+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 34566666554 555555555566666555554 4678999999888887765 445567788888998999999999
Q ss_pred HHHHHHHC-CCC-CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 010642 289 AYQLITSM-GVK-PDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQE 335 (505)
Q Consensus 289 A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 335 (505)
|..+-.-| +-. .++.+...........|-++++...++++..+.|+.
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 99888877 211 134444444444566677888888888888777554
No 329
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.10 E-value=3.2 Score=22.25 Aligned_cols=22 Identities=14% Similarity=0.021 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHh
Q 010642 171 CNSLIAMYSKCGSLGMAFEVFK 192 (505)
Q Consensus 171 ~~~l~~~y~~~g~~~~A~~~~~ 192 (505)
...+..++...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445556666666666666554
No 330
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.69 E-value=80 Score=33.24 Aligned_cols=150 Identities=14% Similarity=0.125 Sum_probs=97.3
Q ss_pred HccCCcHHHHHHHHHHHHhCCCC---ChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHH
Q 010642 41 MKFCSLMGGLQIHARVLRDGYQL---DSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALC 117 (505)
Q Consensus 41 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 117 (505)
.+.+.+++|+.+.+... |..| -..++...|+.+.-.|++++|-...-.|...+..-|.--+..+...++......
T Consensus 367 l~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~ 444 (846)
T KOG2066|consen 367 LEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAP 444 (846)
T ss_pred HHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhc
Confidence 34566777777665443 3333 346788889999999999999999999998899999998988888887765443
Q ss_pred HHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHH------------------HHHHHcCCCCchhHHHHHHHHHH
Q 010642 118 LFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIH------------------RYISEHGYGSKMNLCNSLIAMYS 179 (505)
Q Consensus 118 ~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~------------------~~~~~~~~~~~~~~~~~l~~~y~ 179 (505)
+ +.. ..-..+...|..++-.+.. .+...-.++. .+..+. .-+...-..|+..|.
T Consensus 445 ~---lPt--~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~LYl 516 (846)
T KOG2066|consen 445 Y---LPT--GPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAHLYL 516 (846)
T ss_pred c---CCC--CCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHHHHH
Confidence 3 322 1112345566666666655 2221111111 111111 112234455999999
Q ss_pred hcCCHHHHHHHHhcCCCCChh
Q 010642 180 KCGSLGMAFEVFKGMPEKDVV 200 (505)
Q Consensus 180 ~~g~~~~A~~~~~~m~~~~~~ 200 (505)
..+++.+|..++-...++++.
T Consensus 517 ~d~~Y~~Al~~ylklk~~~vf 537 (846)
T KOG2066|consen 517 YDNKYEKALPIYLKLQDKDVF 537 (846)
T ss_pred HccChHHHHHHHHhccChHHH
Confidence 999999999999888876543
No 331
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.78 E-value=13 Score=31.97 Aligned_cols=91 Identities=14% Similarity=0.056 Sum_probs=50.6
Q ss_pred HHHHHHCCChhHHHHHHHHchhccCCCCCCH-----HHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 010642 103 ISCYIRNQRTRDALCLFDNLNREESGCKPDD-----VTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAM 177 (505)
Q Consensus 103 i~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~-----~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~ 177 (505)
..-+.++|++++|..-|..... -+++.. +.|..-..++.+++.++.|..-....++.+ +.......--..+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale---~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAea 177 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALE---SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEA 177 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHH---hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHH
Confidence 3446678888888888877766 233322 233444445566677777776666666654 2222222222345
Q ss_pred HHhcCCHHHHHHHHhcCCCC
Q 010642 178 YSKCGSLGMAFEVFKGMPEK 197 (505)
Q Consensus 178 y~~~g~~~~A~~~~~~m~~~ 197 (505)
|.+..++++|+.=|+++.+.
T Consensus 178 yek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHh
Confidence 55555566665555555443
No 332
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.22 E-value=43 Score=28.76 Aligned_cols=112 Identities=8% Similarity=-0.032 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHH-----HHHHHHhcCChHHH
Q 010642 217 DAIESFGAMQRAGVFPDDQTFT--GVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGC-----VVDLLGRAGLLDQA 289 (505)
Q Consensus 217 ~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-----li~~~~~~g~~~~A 289 (505)
+......++.....+...-++. .+...+...+++++|...++..... |....+.. |.......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4444455555432222222222 3344567778888888877776642 22333333 34456677888888
Q ss_pred HHHHHHCC-CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 290 YQLITSMG-VKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 290 ~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
+..++... -.-.......-...+...|+-++|...+++.++..
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 88887751 10011122223356777788888888888877776
No 333
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=77.81 E-value=1e+02 Score=32.97 Aligned_cols=188 Identities=14% Similarity=0.081 Sum_probs=90.5
Q ss_pred HhcCCHHHHHHHHhcCC----CCCh-------hHHHHHHHH-HHhCCChHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 010642 179 SKCGSLGMAFEVFKGMP----EKDV-------VSWSAMISG-LAMNGHGRDAIESFGAMQRA----GVFPDDQTFTGVLS 242 (505)
Q Consensus 179 ~~~g~~~~A~~~~~~m~----~~~~-------~~~~~li~~-~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~ 242 (505)
....++++|..+..+.. .++. ..|+++-.. ....|++++|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34566777766665432 2221 245544332 23456777777777666543 12223344555556
Q ss_pred HHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHH-----HHHHhcCChHH--HHHHHHHC-----CCCCC----HHHHH
Q 010642 243 ACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVV-----DLLGRAGLLDQ--AYQLITSM-----GVKPD----STIWR 306 (505)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-----~~~~~~g~~~~--A~~~~~~~-----~~~p~----~~~~~ 306 (505)
+..-.|++++|..+.....+. .-.-+...+...+ ..+...|+... .+..|... +-+|- ..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 666677888777766655542 2222333332222 22444553222 22223222 11121 22333
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHhc----CCCCc---hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 010642 307 TLLGACRIHKHVTLGERVIEHLIELK----AQESG---DYVLLLNLYSSVGDWEKVKELREFMNEKGLQTT 370 (505)
Q Consensus 307 ~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 370 (505)
.++.++.+ .+.+..-.....+.+ |.+-. .+..|+..+...|+.+.|....+++......+.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 33333333 333333333333322 22111 223567777788888888888887776544443
No 334
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=77.60 E-value=80 Score=31.53 Aligned_cols=175 Identities=9% Similarity=0.079 Sum_probs=99.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010642 165 GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP--EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLS 242 (505)
Q Consensus 165 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 242 (505)
+.|....-++++.+..+-+..-.+.+-.+|. ..+-..+-.++..|.++ ..++-..+|+++.+..+ |...+..-+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHH
Confidence 3455555566666666666666666666654 24556667777777776 45666777777766433 3333333333
Q ss_pred HHhccCCHHHHHHHHHHHhhhcCCcCC------cchHHHHHHHHHhcCChHHHHHHHHHC----CCCCCHHHHHHHHHHH
Q 010642 243 ACSHCGLVDEGMMFLDRMSKDFGILPN------IHHYGCVVDLLGRAGLLDQAYQLITSM----GVKPDSTIWRTLLGAC 312 (505)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~ 312 (505)
.+...++.+.+..+|..+... +-|. ...|.-|+..- ..+.+..+.+...+ |...-.+.+.-+-.-|
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 333446777777777766642 2221 12344443321 23445555555444 3333455555666677
Q ss_pred HhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010642 313 RIHKHVTLGERVIEHLIELKAQESGDYVLLLNLY 346 (505)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 346 (505)
....++.+|++++..+.+.+..+..+-..++.-+
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 7778888888888877777655544444444433
No 335
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=77.31 E-value=6.6 Score=22.29 Aligned_cols=28 Identities=32% Similarity=0.413 Sum_probs=24.7
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 337 GDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 337 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
.+|..+...|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3678899999999999999999998764
No 336
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=76.81 E-value=35 Score=28.87 Aligned_cols=66 Identities=15% Similarity=0.168 Sum_probs=38.6
Q ss_pred CCCCCH-HHHHHHHHHHHhcC-----------chhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 297 GVKPDS-TIWRTLLGACRIHK-----------HVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 297 ~~~p~~-~~~~~ll~~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
.+.|+. .++..+..++..++ .++.|...|+++...+|.+ ..|..-+.+. +.|-+++.++.+
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------~kap~lh~e~~~ 135 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN-ELYRKSLEMA------AKAPELHMEIHK 135 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHH------HTHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHH------HhhHHHHHHHHH
Confidence 455653 45555555554443 2667777777777788876 5677666655 347777777777
Q ss_pred CCCCC
Q 010642 365 KGLQT 369 (505)
Q Consensus 365 ~~~~~ 369 (505)
++...
T Consensus 136 ~~~~~ 140 (186)
T PF06552_consen 136 QGLGQ 140 (186)
T ss_dssp SSS--
T ss_pred HHhhh
Confidence 76543
No 337
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.61 E-value=4 Score=22.93 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=24.1
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 338 DYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 338 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
++..+..+|.+.|++++|.+.|+++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567888999999999999999998764
No 338
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=75.71 E-value=26 Score=28.07 Aligned_cols=51 Identities=14% Similarity=0.120 Sum_probs=33.7
Q ss_pred cCchhHHHHHHHHHHHhc-CCCCc-hHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 315 HKHVTLGERVIEHLIELK-AQESG-DYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 315 ~g~~~~a~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
..+..+++.+++.+.+.. |.... ....|.-++.+.|+++.+.++.+.+.+.
T Consensus 48 ~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 48 TEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 345677777888877633 33222 3445677788888888888888777653
No 339
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.22 E-value=6 Score=24.63 Aligned_cols=27 Identities=37% Similarity=0.479 Sum_probs=22.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 340 VLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 340 ~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
..|..+|...|+.+.|.+++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357889999999999999999988644
No 340
>PRK13342 recombination factor protein RarA; Reviewed
Probab=73.27 E-value=1e+02 Score=30.52 Aligned_cols=43 Identities=23% Similarity=0.221 Sum_probs=24.4
Q ss_pred HHHHHHHHHHH---CCChhHHHHHHHHchhccCCCCCCHHHHHHHHHH
Q 010642 98 AWNVLISCYIR---NQRTRDALCLFDNLNREESGCKPDDVTCLLVLQA 142 (505)
Q Consensus 98 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~ 142 (505)
.+..+++++.+ .++++.|+..+..|.. .|..|....-..+..+
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~--~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLE--AGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHH
Confidence 34445555544 3667777777777776 6666654443333333
No 341
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.54 E-value=25 Score=30.78 Aligned_cols=58 Identities=19% Similarity=0.095 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHh
Q 010642 202 WSAMISGLAMNGHGRDAIESFGAMQRAGVFP-DDQTFTGVLSACSHCGLVDEGMMFLDRMS 261 (505)
Q Consensus 202 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (505)
.+.-++.+.+.+...+|+...++-.+. +| |.-+-..+++-++-.|++++|..-++...
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 344556666667777777766655553 23 33344455666666777777766555443
No 342
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.26 E-value=16 Score=31.84 Aligned_cols=64 Identities=16% Similarity=0.062 Sum_probs=48.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 010642 272 HYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQE 335 (505)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 335 (505)
+.+..+..+.+.+++++|+...+.- .-+| |...-..++..++..|++++|..-++-.-++.|..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 4455667788888999998887765 4456 44456677888999999999998888888877654
No 343
>PRK10941 hypothetical protein; Provisional
Probab=72.06 E-value=24 Score=32.35 Aligned_cols=62 Identities=16% Similarity=0.122 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 304 IWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 304 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
..+.|-.++.+.++++.|.++.+.+....|+++.-+.--.-.|.+.|.+..|..=++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34556678899999999999999999999999888888888899999999999988887654
No 344
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=71.98 E-value=53 Score=30.00 Aligned_cols=88 Identities=16% Similarity=0.094 Sum_probs=58.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHh-
Q 010642 206 ISGLAMNGHGRDAIESFGAMQR--AGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGR- 282 (505)
Q Consensus 206 i~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~- 282 (505)
|.+++..+++.+++...-+--+ ..++|...-..+ --|++.+.+..+.++-...... .-.-+...|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCI--LLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCI--LLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHH--HHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 6778888888888775544332 224444433333 3478888888888888777765 333344458787777664
Q ss_pred ----cCChHHHHHHHHHC
Q 010642 283 ----AGLLDQAYQLITSM 296 (505)
Q Consensus 283 ----~g~~~~A~~~~~~~ 296 (505)
.|.+++|+++...-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 68999999888443
No 345
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=71.92 E-value=9.4 Score=20.39 Aligned_cols=25 Identities=20% Similarity=0.020 Sum_probs=11.6
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHh
Q 010642 307 TLLGACRIHKHVTLGERVIEHLIEL 331 (505)
Q Consensus 307 ~ll~~~~~~g~~~~a~~~~~~~~~~ 331 (505)
.+...+...++++.|...++..++.
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 3344444444555555544444443
No 346
>PRK09687 putative lyase; Provisional
Probab=71.85 E-value=84 Score=29.07 Aligned_cols=226 Identities=12% Similarity=-0.044 Sum_probs=130.9
Q ss_pred HhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccCh----HHHHHHHHHHHHcC
Q 010642 88 FDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGAL----EFGEKIHRYISEHG 163 (505)
Q Consensus 88 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~----~~a~~i~~~~~~~~ 163 (505)
++.+..+|.......+.++...|. +++...+..+.. .+|...-...+.++++.|+. +++...+..+...
T Consensus 29 ~~~L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~-----~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~- 101 (280)
T PRK09687 29 FRLLDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCS-----SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE- 101 (280)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh-----CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc-
Confidence 334455677777777777777765 444444444433 24556666667777777763 3455555554332
Q ss_pred CCCchhHHHHHHHHHHhcCCH-----HHHHHHHhc-CCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 010642 164 YGSKMNLCNSLIAMYSKCGSL-----GMAFEVFKG-MPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTF 237 (505)
Q Consensus 164 ~~~~~~~~~~l~~~y~~~g~~-----~~A~~~~~~-m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 237 (505)
.++..+....+.++...+.. ..+...+.. +..++...--..+.++.+.++ .+++..+-.+.. .+|...-
T Consensus 102 -D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR 176 (280)
T PRK09687 102 -DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVR 176 (280)
T ss_pred -CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHH
Confidence 46667776677776665421 233333332 334566666666777777765 466676666665 2444444
Q ss_pred HHHHHHHhccC-CHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 010642 238 TGVLSACSHCG-LVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHK 316 (505)
Q Consensus 238 ~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g 316 (505)
...+.++.+.+ ....+...+..+..+ ++..+-...+.++++.|..+-.-.+++.+. .++ .....+.++...|
T Consensus 177 ~~A~~aLg~~~~~~~~~~~~L~~~L~D----~~~~VR~~A~~aLg~~~~~~av~~Li~~L~-~~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 177 NWAAFALNSNKYDNPDIREAFVAMLQD----KNEEIRIEAIIGLALRKDKRVLSVLIKELK-KGT--VGDLIIEAAGELG 249 (280)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhcC----CChHHHHHHHHHHHccCChhHHHHHHHHHc-CCc--hHHHHHHHHHhcC
Confidence 55555666543 234566666666543 566667777888888887543333344433 233 2335667777777
Q ss_pred chhHHHHHHHHHHHhcC
Q 010642 317 HVTLGERVIEHLIELKA 333 (505)
Q Consensus 317 ~~~~a~~~~~~~~~~~~ 333 (505)
+. .|...+..+.+..+
T Consensus 250 ~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 250 DK-TLLPVLDTLLYKFD 265 (280)
T ss_pred CH-hHHHHHHHHHhhCC
Confidence 74 57777777776555
No 347
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.29 E-value=1.3e+02 Score=31.06 Aligned_cols=178 Identities=12% Similarity=0.085 Sum_probs=93.6
Q ss_pred HHHHHHHHhcCCCC-ChhHHHHHHHH-----HHhCCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhccC--
Q 010642 184 LGMAFEVFKGMPEK-DVVSWSAMISG-----LAMNGHGRDAIESFGAMQR-------AGVFPDDQTFTGVLSACSHCG-- 248 (505)
Q Consensus 184 ~~~A~~~~~~m~~~-~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~g-- 248 (505)
...|...++...+. ++..-..+... +....+.+.|+.+|+.+.. .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 34566666655432 33333333322 3345667777777777765 44 2223444555555532
Q ss_pred ---CHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhc---CChHHHHHHHHHCCC--CCCHHHHHHHHHHH--HhcCch
Q 010642 249 ---LVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRA---GLLDQAYQLITSMGV--KPDSTIWRTLLGAC--RIHKHV 318 (505)
Q Consensus 249 ---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~--~~~g~~ 318 (505)
+.+.|..++...... | .|+.... +...|... .+...|.++|..... .+....+-++.-.. ....+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~-g-~~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAEL-G-NPDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhc-C-CchHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCH
Confidence 556677777777653 3 2333222 22233222 356788888877721 22222222222111 123467
Q ss_pred hHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 010642 319 TLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQT 369 (505)
Q Consensus 319 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 369 (505)
+.|..++.+.-+.+++...--...+..+.. ++++.+.-.+..+.+.|...
T Consensus 381 ~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~ 430 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV 430 (552)
T ss_pred HHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH
Confidence 788888888888774332222233444444 77777777777777766543
No 348
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=71.27 E-value=8.2 Score=25.17 Aligned_cols=31 Identities=13% Similarity=0.071 Sum_probs=25.2
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHhcCCCCc
Q 010642 307 TLLGACRIHKHVTLGERVIEHLIELKAQESG 337 (505)
Q Consensus 307 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 337 (505)
.+.-++.+.|+++.|.+..+.+++.+|.|..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 4556788999999999999999999998854
No 349
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=70.87 E-value=43 Score=25.25 Aligned_cols=86 Identities=16% Similarity=0.183 Sum_probs=58.2
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010642 148 ALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQR 227 (505)
Q Consensus 148 ~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 227 (505)
..++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||...|-++-. .+.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 356777777766655422 33333344556778899999999999998999999987765 356777777777777776
Q ss_pred CCCCCCHHHH
Q 010642 228 AGVFPDDQTF 237 (505)
Q Consensus 228 ~g~~p~~~t~ 237 (505)
+| .|...+|
T Consensus 97 sg-~p~lq~F 105 (115)
T TIGR02508 97 SG-DPRLQTF 105 (115)
T ss_pred CC-CHHHHHH
Confidence 65 3444444
No 350
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=70.46 E-value=57 Score=26.58 Aligned_cols=78 Identities=8% Similarity=0.221 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhcCCC---------CChhHHHHHHHHHHHCCC-hhHHHHHHHHchhccCCCCCCHHHH
Q 010642 67 LMTTLMDLYSTFEKSFEACKLFDEIPQ---------RDTVAWNVLISCYIRNQR-TRDALCLFDNLNREESGCKPDDVTC 136 (505)
Q Consensus 67 ~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~pd~~t~ 136 (505)
..|.++.-.+..++......+++.+.. .+-.+|++++.+..+... ---+..+|..|++ .+.+++..-|
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~--~~~~~t~~dy 118 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK--NDIEFTPSDY 118 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH--cCCCCCHHHH
Confidence 345565555555666666665555531 345677888887766655 3446777888877 6778888888
Q ss_pred HHHHHHHHhc
Q 010642 137 LLVLQACAHL 146 (505)
Q Consensus 137 ~~ll~~~~~~ 146 (505)
..++.++.+-
T Consensus 119 ~~li~~~l~g 128 (145)
T PF13762_consen 119 SCLIKAALRG 128 (145)
T ss_pred HHHHHHHHcC
Confidence 8888887654
No 351
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=69.75 E-value=12 Score=34.88 Aligned_cols=56 Identities=11% Similarity=0.051 Sum_probs=41.2
Q ss_pred HHHHHHCCChhHHHHHHHHchhccCCCCC-CHHHHHHHHHHHHhccChHHHHHHHHHHHHc
Q 010642 103 ISCYIRNQRTRDALCLFDNLNREESGCKP-DDVTCLLVLQACAHLGALEFGEKIHRYISEH 162 (505)
Q Consensus 103 i~~~~~~g~~~~A~~~~~~m~~~~~~~~p-d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 162 (505)
..-|.++|.+++|++.|.+... +.| |.+++..-..+|.+...+..|+.-...++..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia----~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL 160 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA----VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL 160 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc----cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 3457888888888888887744 556 7888888888888888877776655555543
No 352
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=69.17 E-value=79 Score=33.12 Aligned_cols=44 Identities=14% Similarity=0.137 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHhcCC---CCChhHHHHHHHHHHHC
Q 010642 65 SQLMTTLMDLYSTFEKSFEACKLFDEIP---QRDTVAWNVLISCYIRN 109 (505)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 109 (505)
..+|. +|..+.++|++++|.++..... ++....+-..+..|..+
T Consensus 112 ~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 112 DPIWA-LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EEHHH-HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred CccHH-HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 34454 5556778888888888883322 23344555666666554
No 353
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=68.91 E-value=99 Score=28.68 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=22.0
Q ss_pred ChhHHHHHHHHH--HHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHH
Q 010642 95 DTVAWNVLISCY--IRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQA 142 (505)
Q Consensus 95 ~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~ 142 (505)
.+..++-+|+-| ...+--++..+++..+ .++.++...-.+++.+
T Consensus 110 ~~qvf~KliRRykyLeK~fE~e~~k~Llfl----k~F~e~Er~KLA~~Ta 155 (412)
T KOG2297|consen 110 SVQVFQKLIRRYKYLEKNFENEMRKFLLFL----KLFEENERKKLAMLTA 155 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HccCHHHHHHHHHHHH
Confidence 345567777644 3333334444444444 3466666554444444
No 354
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=66.21 E-value=1.8e+02 Score=30.58 Aligned_cols=48 Identities=21% Similarity=0.084 Sum_probs=33.6
Q ss_pred HhcCchhHHHHHHHHHHHhc---CC------CCchHHHHHHHHHhCCCHHHHHHHHH
Q 010642 313 RIHKHVTLGERVIEHLIELK---AQ------ESGDYVLLLNLYSSVGDWEKVKELRE 360 (505)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~---~~------~~~~~~~l~~~~~~~g~~~~a~~~~~ 360 (505)
...+++..|....+.+.+.. |+ .+..+...+-.+-..|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 46788888999999888754 21 12233444445567799999999997
No 355
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=66.14 E-value=46 Score=34.84 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=13.3
Q ss_pred HHhcCChHHHHHHHHHCCCCC
Q 010642 280 LGRAGLLDQAYQLITSMGVKP 300 (505)
Q Consensus 280 ~~~~g~~~~A~~~~~~~~~~p 300 (505)
+...|++++|++.++++++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 346778888888888876666
No 356
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=66.13 E-value=1e+02 Score=27.82 Aligned_cols=59 Identities=10% Similarity=0.032 Sum_probs=25.8
Q ss_pred HHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHH
Q 010642 103 ISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISE 161 (505)
Q Consensus 103 i~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 161 (505)
+..-.+.|++++|...|+.+..+...-+-...+...++-++-+.++++.|....++..+
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33344555555555555555442111111223333334444444555555554444444
No 357
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.93 E-value=88 Score=26.99 Aligned_cols=90 Identities=10% Similarity=0.017 Sum_probs=58.0
Q ss_pred HHHHHhccChHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhH--HHHHHHHHHhCCCh
Q 010642 140 LQACAHLGALEFGEKIHRYISEHGYGSK--MNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVS--WSAMISGLAMNGHG 215 (505)
Q Consensus 140 l~~~~~~~~~~~a~~i~~~~~~~~~~~~--~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~ 215 (505)
...+...+++++|...++......-..+ ..+---|.......|.+|+|..+++....++-.. ...-...+...|+-
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k 175 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCch
Confidence 3455667777777777776664321111 1122335566777888888888888877665444 33334677888888
Q ss_pred HHHHHHHHHHHHCC
Q 010642 216 RDAIESFGAMQRAG 229 (505)
Q Consensus 216 ~~A~~~~~~m~~~g 229 (505)
++|..-|.+..+.+
T Consensus 176 ~~Ar~ay~kAl~~~ 189 (207)
T COG2976 176 QEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHcc
Confidence 88888888887765
No 358
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=65.82 E-value=45 Score=24.36 Aligned_cols=66 Identities=18% Similarity=0.084 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHH
Q 010642 152 GEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAI 219 (505)
Q Consensus 152 a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 219 (505)
+.+++..+.+.|+- +..-...+-.+-...|+.+.|.++++.++ +.+..|..+++++-..|...-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 34566666666632 22222222222225688888888888888 88888888888888887765554
No 359
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=65.18 E-value=2.3e+02 Score=31.48 Aligned_cols=254 Identities=6% Similarity=-0.102 Sum_probs=109.3
Q ss_pred HHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCC
Q 010642 86 KLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYG 165 (505)
Q Consensus 86 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~ 165 (505)
.+...+..+|...-..-+..+.+.+..+ +...+..... .+|...-...+.++.+.+........+..+.+ .
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~-----D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~ 695 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALG-----DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG---S 695 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc-----CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---C
Confidence 4444445566666666666666655433 3333333322 12333333344444333211111122222222 2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010642 166 SKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACS 245 (505)
Q Consensus 166 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 245 (505)
+|..+-...+.++...+.- ....+...+..+|...-...+.++.+.+..+.. .... -.++...-.....++.
T Consensus 696 ~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l----~~~l---~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVESV----AGAA---TDENREVRIAVAKGLA 767 (897)
T ss_pred CCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHH----HHHh---cCCCHHHHHHHHHHHH
Confidence 4455555555555443311 122344445556665555555565555443221 1111 1234444444455555
Q ss_pred ccCCHHH-HHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHH
Q 010642 246 HCGLVDE-GMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERV 324 (505)
Q Consensus 246 ~~g~~~~-a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 324 (505)
..+..+. +...+..+..+ ++...-...+.++.+.|..+.+...+..+-..++..+=...+.++...+. +++...
T Consensus 768 ~~~~~~~~~~~~L~~ll~D----~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~ 842 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTGD----PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPA 842 (897)
T ss_pred HhccccchhHHHHHHHhcC----CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHH
Confidence 5544332 23334444332 44555556666666666655443333333123444444444555555543 233333
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 325 IEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
+..+.+ -++...-...+.++.+.+.-..+...+....
T Consensus 843 L~~~L~--D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 843 LVEALT--DPHLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHHHhc--CCCHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 333332 1223344445555555422334444444443
No 360
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=65.13 E-value=83 Score=26.43 Aligned_cols=18 Identities=17% Similarity=0.082 Sum_probs=8.0
Q ss_pred HHHHhCCChHHHHHHHHH
Q 010642 207 SGLAMNGHGRDAIESFGA 224 (505)
Q Consensus 207 ~~~~~~g~~~~A~~~~~~ 224 (505)
..+...|++-+|+++.+.
T Consensus 97 evLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 97 EVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHhCCCHHHHHHHHHH
Confidence 334444444444444443
No 361
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=65.01 E-value=36 Score=26.85 Aligned_cols=48 Identities=17% Similarity=0.298 Sum_probs=37.3
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHH
Q 010642 295 SMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLL 342 (505)
Q Consensus 295 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 342 (505)
.+.+-|++.+...-+.+|++.+|+..|.++|+-++..-++....|-.+
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 337789999999999999999999999999998877655444444443
No 362
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=64.89 E-value=16 Score=22.70 Aligned_cols=22 Identities=14% Similarity=0.009 Sum_probs=10.8
Q ss_pred HHHHHhCCChHHHHHHHHHHHH
Q 010642 206 ISGLAMNGHGRDAIESFGAMQR 227 (505)
Q Consensus 206 i~~~~~~g~~~~A~~~~~~m~~ 227 (505)
..+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444555555555555555443
No 363
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=64.45 E-value=88 Score=31.59 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC--Chh---HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010642 172 NSLIAMYSKCGSLGMAFEVFKGMPEK--DVV---SWSAMISGLAMNGHGRDAIESFGAMQR 227 (505)
Q Consensus 172 ~~l~~~y~~~g~~~~A~~~~~~m~~~--~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~ 227 (505)
..|+.-|.+.+++++|..++..|.=. ... +.+.+.+.+.+..-.++....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 35777899999999999999888622 122 333344444454444444445554443
No 364
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=64.20 E-value=22 Score=25.41 Aligned_cols=45 Identities=7% Similarity=0.054 Sum_probs=29.0
Q ss_pred hcCchhHHHHHHHHHHHhcCCCCc---hHHHHHHHHHhCCCHHHHHHH
Q 010642 314 IHKHVTLGERVIEHLIELKAQESG---DYVLLLNLYSSVGDWEKVKEL 358 (505)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~ 358 (505)
...+.+.|+..++.+++..+..+. ++-.|+.+|+..|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567777777777766544333 444667777777777776655
No 365
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=63.93 E-value=1e+02 Score=27.11 Aligned_cols=157 Identities=12% Similarity=0.034 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC-HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCch--hHHH
Q 010642 96 TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD-DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKM--NLCN 172 (505)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~--~~~~ 172 (505)
+..||-|.--+...|+++.|.+.|+...+ ..|. ..+...-.-++---|++..|.+-+.+.-+.+ +.|+ ..|-
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~E----LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DPfR~LWL 173 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLE----LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDPFRSLWL 173 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhc----cCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC-CCChHHHHHH
Confidence 45566666666667777777777766644 2222 1111111111222355555554444443332 2222 1111
Q ss_pred HHHHHHHhcCCHHHHHH-HHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHH
Q 010642 173 SLIAMYSKCGSLGMAFE-VFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPD-------DQTFTGVLSAC 244 (505)
Q Consensus 173 ~l~~~y~~~g~~~~A~~-~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~t~~~ll~~~ 244 (505)
-+. -..-+..+|.. +.++....|..-|..-|..|.--.-.++ .+++++... -.-+ ..||.-+.+-+
T Consensus 174 Yl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e--~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 174 YLN---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEE--TLMERLKAD-ATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred HHH---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHH--HHHHHHHhh-ccchHHHHHHHHHHHHHHHHHH
Confidence 111 12224444443 3344444555555555544432211111 223332221 1111 24677788888
Q ss_pred hccCCHHHHHHHHHHHhhh
Q 010642 245 SHCGLVDEGMMFLDRMSKD 263 (505)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~ 263 (505)
...|+.++|..+|+-....
T Consensus 248 l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 248 LSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hccccHHHHHHHHHHHHHH
Confidence 8888888888888877763
No 366
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=63.84 E-value=65 Score=24.76 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010642 201 SWSAMISGLAMNGHGRDAIESFGAMQR 227 (505)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 227 (505)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467777778888888888888877765
No 367
>PRK11619 lytic murein transglycosylase; Provisional
Probab=63.27 E-value=2e+02 Score=30.31 Aligned_cols=223 Identities=8% Similarity=-0.113 Sum_probs=117.8
Q ss_pred cChHHHHHHHHHHHHcC-CCCc--hhHHHHHHHHHHhcCCHHHHHHHHhcCCCC--ChhHHHHHHHHHHhCCChHHHHHH
Q 010642 147 GALEFGEKIHRYISEHG-YGSK--MNLCNSLIAMYSKCGSLGMAFEVFKGMPEK--DVVSWSAMISGLAMNGHGRDAIES 221 (505)
Q Consensus 147 ~~~~~a~~i~~~~~~~~-~~~~--~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~ 221 (505)
.+.+.|...+....... +.++ ..+...+.......+..++|...++..... +...+..-+..-...++++.+...
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 45577777777654432 2222 123333433333333255666666654322 333333333344467777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhh-----------cCCcCC------cch--------HHHH
Q 010642 222 FGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKD-----------FGILPN------IHH--------YGCV 276 (505)
Q Consensus 222 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----------~~~~p~------~~~--------~~~l 276 (505)
+..|.... .-...-.--+..+....|+.++|..+|+.+... .|.++. ... --.-
T Consensus 335 i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~r 413 (644)
T PRK11619 335 LARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMAR 413 (644)
T ss_pred HHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHH
Confidence 77764321 112333344556656678888887777776432 111100 000 0112
Q ss_pred HHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc---CCCCchHHHHHHHHHhCCCHH
Q 010642 277 VDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELK---AQESGDYVLLLNLYSSVGDWE 353 (505)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~ 353 (505)
+..+...|....|...+..+....+......+.......|..+.++.........+ ..-+..|...+..+++.-.++
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 34456677888887777666222455555566666677888888877766543321 111335777777777766666
Q ss_pred HHHHHHHHHHhCCCCCC
Q 010642 354 KVKELREFMNEKGLQTT 370 (505)
Q Consensus 354 ~a~~~~~~m~~~~~~~~ 370 (505)
.+.-.--...+.+..|.
T Consensus 494 ~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 494 QSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 66543223345666654
No 368
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=62.22 E-value=1.4e+02 Score=29.07 Aligned_cols=54 Identities=11% Similarity=0.090 Sum_probs=34.8
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--ccCCHHHHHHHHHHHhh
Q 010642 208 GLAMNGHGRDAIESFGAMQRAGVFPDDQ--TFTGVLSACS--HCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 208 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~--~~g~~~~a~~~~~~~~~ 262 (505)
.+.+.+++..|.++|+++... +.++.. .+..+..+|. ..-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344678888888888888876 554443 3334444443 35567788888887765
No 369
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=61.49 E-value=47 Score=30.28 Aligned_cols=84 Identities=11% Similarity=0.083 Sum_probs=53.3
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCC----CCChhHHHHHHHHHHH---
Q 010642 36 AIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIP----QRDTVAWNVLISCYIR--- 108 (505)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~--- 108 (505)
-|.+++.++++.++....-+--..--+..+.+...-|-.|.|.+....+.++-..-. +.+..-|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 467888888888876544333221112233455555667889998877666654332 2345557777666555
Q ss_pred --CCChhHHHHHH
Q 010642 109 --NQRTRDALCLF 119 (505)
Q Consensus 109 --~g~~~~A~~~~ 119 (505)
.|.+++|.++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 69999998887
No 370
>PRK12798 chemotaxis protein; Reviewed
Probab=60.72 E-value=1.7e+02 Score=28.57 Aligned_cols=185 Identities=15% Similarity=0.168 Sum_probs=119.2
Q ss_pred cCCHHHHHHHHhcCCC----CChhHHHHHHHHH-HhCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHH
Q 010642 181 CGSLGMAFEVFKGMPE----KDVVSWSAMISGL-AMNGHGRDAIESFGAMQRAGVFPDD----QTFTGVLSACSHCGLVD 251 (505)
Q Consensus 181 ~g~~~~A~~~~~~m~~----~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~ 251 (505)
.|+..+|.+.+..+.. +....+-+|+.+- ....++.+|+++|++..- ..|-. .....-+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 7899999999988863 3455677777654 456678999999999876 34443 23444455667899999
Q ss_pred HHHHHHHHHhhhcCCcCCcch-HHHHHHHHHhcC---ChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Q 010642 252 EGMMFLDRMSKDFGILPNIHH-YGCVVDLLGRAG---LLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEH 327 (505)
Q Consensus 252 ~a~~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 327 (505)
++..+-.....+|.-.|=... +..++..+.+.+ ..+.-..++..|.-.--...|-.+...-...|+.+.|...-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 988877777765554443222 233344444433 3455566666663222355788888888999999999999999
Q ss_pred HHHhcCCCCchHHHHHHHHH-----hCCCHHHHHHHHHHHHhCCCC
Q 010642 328 LIELKAQESGDYVLLLNLYS-----SVGDWEKVKELREFMNEKGLQ 368 (505)
Q Consensus 328 ~~~~~~~~~~~~~~l~~~~~-----~~g~~~~a~~~~~~m~~~~~~ 368 (505)
...+... ...-...+..|. -..+++++.+.+..+....+.
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~ 327 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDRDKLS 327 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCC
Confidence 9888732 233333333332 234577777777665554443
No 371
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=60.51 E-value=1.4e+02 Score=27.47 Aligned_cols=210 Identities=12% Similarity=0.031 Sum_probs=114.8
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCChh-------hHHHHHHHHHccCCcHHHHHHHHHHHH----hCCCCChhHHHHHHH
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTNPF-------ACSFAIKCCMKFCSLMGGLQIHARVLR----DGYQLDSQLMTTLMD 73 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-------~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~li~ 73 (505)
.++.+++++|+..+.+.+..|+..|.. +...+...|.+.|+...-.+....... ..-+....+..+|+.
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLie 92 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIE 92 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHH
Confidence 456788999999999999998876643 445567778888887665554443322 111334456666776
Q ss_pred HHHh-CCCHHHHHHHHhcCCC---C------ChhHHHHHHHHHHHCCChhHHHHHHHH----chhccCCCCCCHHHHHHH
Q 010642 74 LYST-FEKSFEACKLFDEIPQ---R------DTVAWNVLISCYIRNQRTRDALCLFDN----LNREESGCKPDDVTCLLV 139 (505)
Q Consensus 74 ~~~~-~g~~~~A~~~~~~~~~---~------~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~~~~~~pd~~t~~~l 139 (505)
.+-. ...++.-+.+.....+ + ....-..+|..+.+.|.+.+|+.+... +++ ..-+|+..+...+
T Consensus 93 kf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk--~DDK~~Li~vhll 170 (421)
T COG5159 93 KFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKK--YDDKINLITVHLL 170 (421)
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh--hcCccceeehhhh
Confidence 6543 3456666666555432 1 112234578899999999999876544 444 4455655544332
Q ss_pred H-HHHHhccChHHHHHHHHHHHHc----CCCCchhHHHHHHHHHH--hcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhC
Q 010642 140 L-QACAHLGALEFGEKIHRYISEH----GYGSKMNLCNSLIAMYS--KCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMN 212 (505)
Q Consensus 140 l-~~~~~~~~~~~a~~i~~~~~~~----~~~~~~~~~~~l~~~y~--~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 212 (505)
= .+|-...++.+++.-+..+.-. -+||-....--|+++-. ...++..|...|-+. ..+|...
T Consensus 171 ESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea-----------~Egft~l 239 (421)
T COG5159 171 ESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEA-----------LEGFTLL 239 (421)
T ss_pred hHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHH-----------Hhccccc
Confidence 2 2344444554444443333221 23444443333443322 223444444444322 1223333
Q ss_pred CChHHHHHHHHHHHH
Q 010642 213 GHGRDAIESFGAMQR 227 (505)
Q Consensus 213 g~~~~A~~~~~~m~~ 227 (505)
....+|...++-|.-
T Consensus 240 ~~d~kAc~sLkYmlL 254 (421)
T COG5159 240 KMDVKACVSLKYMLL 254 (421)
T ss_pred cchHHHHHHHHHHHH
Confidence 344566666666554
No 372
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=60.19 E-value=74 Score=25.25 Aligned_cols=42 Identities=12% Similarity=0.163 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhc--CCCCchHHHHHHHHHhCCCHHHHHHHHHH
Q 010642 320 LGERVIEHLIELK--AQESGDYVLLLNLYSSVGDWEKVKELREF 361 (505)
Q Consensus 320 ~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 361 (505)
.+..+|+.|...+ ...+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7888888888765 44556788888899999999999998864
No 373
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=59.68 E-value=54 Score=33.72 Aligned_cols=76 Identities=16% Similarity=0.136 Sum_probs=38.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhhc-CCcCCcchHHHHHHHHHhcCChH------HHHHHHHHCCCCCCHHHHHHHHHH
Q 010642 239 GVLSACSHCGLVDEGMMFLDRMSKDF-GILPNIHHYGCVVDLLGRAGLLD------QAYQLITSMGVKPDSTIWRTLLGA 311 (505)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~p~~~~~~~ll~~ 311 (505)
+|+.+|...|++-++.++++...... |...-...||..|....+.|.++ .|.+++++..+.-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 55666666666666666666655320 11122334555555555555432 344555555444555666555554
Q ss_pred HHh
Q 010642 312 CRI 314 (505)
Q Consensus 312 ~~~ 314 (505)
...
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 433
No 374
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=59.63 E-value=2.6e+02 Score=30.25 Aligned_cols=190 Identities=16% Similarity=0.135 Sum_probs=94.2
Q ss_pred HHHCCChhHHHHHHHHchhc--cCCCCCCHH---HHHHHHH-HHHhccChHHHHHHHHHHHHc----CCCCchhHHHHHH
Q 010642 106 YIRNQRTRDALCLFDNLNRE--ESGCKPDDV---TCLLVLQ-ACAHLGALEFGEKIHRYISEH----GYGSKMNLCNSLI 175 (505)
Q Consensus 106 ~~~~g~~~~A~~~~~~m~~~--~~~~~pd~~---t~~~ll~-~~~~~~~~~~a~~i~~~~~~~----~~~~~~~~~~~l~ 175 (505)
.....++.+|..+..+.... ..+..+... .++.+-. .....|+++.+..+-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567888888888776541 011112221 2332222 224567788888777766553 2334456677777
Q ss_pred HHHHhcCCHHHHHHHHhcCCC----CChhH---HHHHHH--HHHhCCCh--HHHHHHHHHHHHC--CCC----CCHHHHH
Q 010642 176 AMYSKCGSLGMAFEVFKGMPE----KDVVS---WSAMIS--GLAMNGHG--RDAIESFGAMQRA--GVF----PDDQTFT 238 (505)
Q Consensus 176 ~~y~~~g~~~~A~~~~~~m~~----~~~~~---~~~li~--~~~~~g~~--~~A~~~~~~m~~~--g~~----p~~~t~~ 238 (505)
.+..-.|++++|..+.....+ .++.. |..+.. .+...|+. .+....|...... +-+ +-..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 888888888888887765543 24433 333322 23445532 2223333333221 011 1223444
Q ss_pred HHHHHHhccC-CHHHHHHHHHHHhhhcCCcCCcchH--HHHHHHHHhcCChHHHHHHHHHC
Q 010642 239 GVLSACSHCG-LVDEGMMFLDRMSKDFGILPNIHHY--GCVVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 239 ~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~~ 296 (505)
.++.++.+.. ...++..-+.--.. +...|-...+ ..|+..+...|++++|...+.++
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~-~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~ 644 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSV-YTPQPLLSRLALSMLAELEFLRGDLDKALAQLDEL 644 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhh-cccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5555554421 11222222222211 1222222222 25667777788888888877776
No 375
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=59.44 E-value=26 Score=25.00 Aligned_cols=44 Identities=11% Similarity=0.114 Sum_probs=18.8
Q ss_pred CCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHH
Q 010642 212 NGHGRDAIESFGAMQRAGVFPDD--QTFTGVLSACSHCGLVDEGMM 255 (505)
Q Consensus 212 ~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~ 255 (505)
..+.++|+..|+...+.-..|.. .++..++.+++..|++.++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555554443222211 234444455555555444433
No 376
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=58.93 E-value=1.5e+02 Score=27.30 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=23.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 010642 205 MISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFT 238 (505)
Q Consensus 205 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 238 (505)
+..-..+.+++++|+..|.++...|+..|..+.+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~n 42 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLN 42 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhh
Confidence 3444566777888888888888777777776543
No 377
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=58.84 E-value=56 Score=25.82 Aligned_cols=71 Identities=11% Similarity=0.267 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC
Q 010642 217 DAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 217 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 296 (505)
+..+-++......+.|+....-..+.+|-+.+++..|.++|+-+..+ ..+....|-.+++ +...+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~---------elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK---------ELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH---------HHHHHHHHh
Confidence 44555666666778899999999999999999999999999988764 3343335655543 445556666
Q ss_pred CC
Q 010642 297 GV 298 (505)
Q Consensus 297 ~~ 298 (505)
|+
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 54
No 378
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=58.11 E-value=1.7e+02 Score=27.56 Aligned_cols=110 Identities=15% Similarity=-0.021 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhhhcCC---cCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHH
Q 010642 250 VDEGMMFLDRMSKDFGI---LPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIE 326 (505)
Q Consensus 250 ~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 326 (505)
.+.|.+.|+.......- ..++..-..+.....+.|..+.-..+++.....++...-..++.+.+...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 56788888888763111 234445555666667777766655565555445577778888999888899988889999
Q ss_pred HHHHhc-CCCCchHHHHHHHHHhCCCH--HHHHHHHH
Q 010642 327 HLIELK-AQESGDYVLLLNLYSSVGDW--EKVKELRE 360 (505)
Q Consensus 327 ~~~~~~-~~~~~~~~~l~~~~~~~g~~--~~a~~~~~ 360 (505)
.+...+ ..+.. ...++..+...+.. +.+...+.
T Consensus 226 ~~l~~~~v~~~d-~~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 226 LLLSNDKVRSQD-IRYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHCTSTS-TTT-HHHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHcCCcccccHH-HHHHHHHHhcCChhhHHHHHHHHH
Confidence 988854 22333 33444444433333 55555443
No 379
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.89 E-value=1.9e+02 Score=28.15 Aligned_cols=59 Identities=14% Similarity=0.040 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhcCCC------CChhHHHHHHHHHHHCCChhHHHHHHHHchh
Q 010642 66 QLMTTLMDLYSTFEKSFEACKLFDEIPQ------RDTVAWNVLISCYIRNQRTRDALCLFDNLNR 124 (505)
Q Consensus 66 ~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 124 (505)
..+.-+.+.|..+|+++.|.+.+.+..+ ..+..|-.+|..-.-.|+|......-.+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3556677778888888888888877543 2344566666666667777766666666544
No 380
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.77 E-value=37 Score=29.26 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 010642 297 GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKA 333 (505)
Q Consensus 297 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 333 (505)
...|++.+|..++.++...|+.++|.+..+++....|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4567777777777777777777777777777777666
No 381
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.95 E-value=39 Score=29.17 Aligned_cols=30 Identities=20% Similarity=0.152 Sum_probs=14.7
Q ss_pred cCCcchHHHHHHHHHhcCChHHHHHHHHHC
Q 010642 267 LPNIHHYGCVVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 267 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 296 (505)
.|++..|..++..+...|+.++|.++..++
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444455555555555554444444
No 382
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=56.95 E-value=4.7 Score=27.44 Aligned_cols=21 Identities=14% Similarity=0.430 Sum_probs=16.5
Q ss_pred ceEEEecCCccccccCCccCC
Q 010642 481 REVIIRDRLRFHHFREGRCSC 501 (505)
Q Consensus 481 ~~~~~~~~~~~h~~~~g~~~~ 501 (505)
+.|=+.|.+..|+|++|+-+-
T Consensus 8 ksi~LkDGstvyiFKDGKMam 28 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAM 28 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEE
T ss_pred eeEecCCCCEEEEEcCCceeh
Confidence 456689999999999998653
No 383
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=56.84 E-value=69 Score=28.25 Aligned_cols=63 Identities=14% Similarity=0.013 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCchh-------HHHHHHHHHHHhc--CCC----CchHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 010642 305 WRTLLGACRIHKHVT-------LGERVIEHLIELK--AQE----SGDYVLLLNLYSSVGDWEKVKELREFMNEKGL 367 (505)
Q Consensus 305 ~~~ll~~~~~~g~~~-------~a~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 367 (505)
+-.+.-.|+..|+.+ .|.+.|.+..+.. |.. ......++..+.+.|+.++|.+.|.++...+-
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 334445566666644 4445555544443 211 23455677888999999999999999876543
No 384
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=56.63 E-value=1.8e+02 Score=27.42 Aligned_cols=93 Identities=12% Similarity=0.181 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhh---cCCcCCcchHHHHHHHH-H----hcCChHHHHHHHHHCC---CCCCHH
Q 010642 235 QTFTGVLSACSHCGLVDEGMMFLDRMSKD---FGILPNIHHYGCVVDLL-G----RAGLLDQAYQLITSMG---VKPDST 303 (505)
Q Consensus 235 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p~~~~~~~li~~~-~----~~g~~~~A~~~~~~~~---~~p~~~ 303 (505)
.........|++.|+.+.|.+.+....++ .|.+.|+..+..=+..+ . -...+++|..++++-| .+.-..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 34455556677777777777666554432 14444444332222211 1 1234555666665552 111223
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHH
Q 010642 304 IWRTLLGACRIHKHVTLGERVIEHLI 329 (505)
Q Consensus 304 ~~~~ll~~~~~~g~~~~a~~~~~~~~ 329 (505)
+|..+- |....++.+|-.+|-...
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHc
Confidence 443332 223345555555554443
No 385
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=56.33 E-value=46 Score=33.71 Aligned_cols=111 Identities=9% Similarity=0.055 Sum_probs=62.0
Q ss_pred HHHHHHHHHhCCCC--CChhhHHHHHHHHHc-cCCcHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhCCCHHHHHHHHh
Q 010642 14 GFYLFEKMRQKRIP--TNPFACSFAIKCCMK-FCSLMGGLQIHARVLRDGYQLD-SQLMTTLMDLYSTFEKSFEACKLFD 89 (505)
Q Consensus 14 A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 89 (505)
-.+....|...|.+ |....+..+.++|-+ .|+..+|.......+-...+.. ....-+|...+.+.|...+|.-++.
T Consensus 194 ~~~~~~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILh 273 (886)
T KOG4507|consen 194 SIDDIGHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILH 273 (886)
T ss_pred hHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheee
Confidence 34555666655543 333445555666654 3777777776665544321111 1234556666777887777776665
Q ss_pred cCCCC-Chh--HHHHHHHHHHHCCChhHHHHHHHHchh
Q 010642 90 EIPQR-DTV--AWNVLISCYIRNQRTRDALCLFDNLNR 124 (505)
Q Consensus 90 ~~~~~-~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~ 124 (505)
...+. +.. .+..+.++++..+++...+.-|+...+
T Consensus 274 AA~~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k 311 (886)
T KOG4507|consen 274 AALDDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQ 311 (886)
T ss_pred hhccCCccccccceeHHHHHHHHhhhhhhhhhhhhhhc
Confidence 44431 111 144566666666666666666666555
No 386
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.25 E-value=77 Score=23.19 Aligned_cols=66 Identities=9% Similarity=0.074 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHH
Q 010642 49 GLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDAL 116 (505)
Q Consensus 49 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 116 (505)
+.+++..++..|+- +......+-..-...|+.+.|.++++.++ +....|...++++-..|.-.-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 34566666666642 22222222222224578888888888888 77788888888888777655543
No 387
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=56.10 E-value=75 Score=29.71 Aligned_cols=49 Identities=12% Similarity=0.218 Sum_probs=21.2
Q ss_pred hccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHH
Q 010642 245 SHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLI 293 (505)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 293 (505)
.+.|+..+|.+.|+.+.++..+..-......|+.++....-+.+...++
T Consensus 286 RklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred HHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555543221111122234444444444444444443
No 388
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=55.99 E-value=1e+02 Score=27.62 Aligned_cols=56 Identities=7% Similarity=-0.114 Sum_probs=47.5
Q ss_pred HHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 310 GACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
.++...|++-++++...+++...|.|..+|..-..+.+..=+..+|.+=|....+.
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 45567789999999999999999999999998888888888888888888777654
No 389
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=55.96 E-value=9.8 Score=37.18 Aligned_cols=95 Identities=9% Similarity=-0.004 Sum_probs=65.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHH-HHHHHhcCChHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcC
Q 010642 240 VLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCV-VDLLGRAGLLDQAYQLITSM-GVKPDS-TIWRTLLGACRIHK 316 (505)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g 316 (505)
-+......+.++.|..++.+.++ +.||...|-+. ..++.+.+++..|+.=+..+ ...|+. ..|-.=..+|...+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34455667889999999998884 46765555333 36788888888887666555 555542 24433445677778
Q ss_pred chhHHHHHHHHHHHhcCCCCc
Q 010642 317 HVTLGERVIEHLIELKAQESG 337 (505)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~~~~ 337 (505)
.+.+|...|+......|.++.
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHH
Confidence 888888888888888887643
No 390
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.63 E-value=13 Score=39.19 Aligned_cols=97 Identities=13% Similarity=0.236 Sum_probs=66.7
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHH
Q 010642 212 NGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQ 291 (505)
Q Consensus 212 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 291 (505)
+.++++.+.+.+.-.--| .++|..+.+.|.++-|..+.+.-..++ .....+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHH
Confidence 455666666555433222 235666677788877777655433321 23456889999998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 292 LITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 292 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
.-.+++ +..+|..|.......|+.+.|+..+++....+
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~knfe 702 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKNFE 702 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 888874 67889999999899999999998888876544
No 391
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=55.11 E-value=64 Score=24.79 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHchh
Q 010642 98 AWNVLISCYIRNQRTRDALCLFDNLNR 124 (505)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 124 (505)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488888899999999999999988755
No 392
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=54.96 E-value=25 Score=19.23 Aligned_cols=29 Identities=7% Similarity=0.115 Sum_probs=19.6
Q ss_pred CchhHHHHHHHHHHHhcCCCCchHHHHHH
Q 010642 316 KHVTLGERVIEHLIELKAQESGDYVLLLN 344 (505)
Q Consensus 316 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 344 (505)
|+.+.+..+++++....|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677778888887777766666655443
No 393
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.57 E-value=2.7e+02 Score=28.86 Aligned_cols=19 Identities=11% Similarity=0.244 Sum_probs=10.4
Q ss_pred chhcCCchHHHHHHHHHHh
Q 010642 5 YSMSSSPEEGFYLFEKMRQ 23 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~ 23 (505)
+....+++.|+..|+.+..
T Consensus 259 ~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred ccccccHHHHHHHHHHHHH
Confidence 3444555666666665544
No 394
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=53.33 E-value=46 Score=24.54 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 323 RVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
..++...+.+|.+...-..+...+...|++++|.+.+-.+.+..
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34555566677777777788888888888888887777776553
No 395
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=52.90 E-value=85 Score=23.23 Aligned_cols=25 Identities=24% Similarity=0.209 Sum_probs=16.6
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 308 LLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 308 ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
+.......|+.++|...+++.++.-
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3344566677777777777776654
No 396
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=52.68 E-value=1e+02 Score=31.47 Aligned_cols=83 Identities=12% Similarity=0.012 Sum_probs=41.1
Q ss_pred cCCchHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHH
Q 010642 8 SSSPEEGFYLFEKMRQKRIPTN-PFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACK 86 (505)
Q Consensus 8 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 86 (505)
.|+..+|+..+....-...+-. .....++...+-+.|...+|.-++..+........ .-+-.+.+.|+..+++.....
T Consensus 226 ~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t-~n~y~l~~i~aml~~~N~S~~ 304 (886)
T KOG4507|consen 226 KGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFT-SNYYTLGNIYAMLGEYNHSVL 304 (886)
T ss_pred cCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCcccc-ccceeHHHHHHHHhhhhhhhh
Confidence 5777788877766554321111 12344455556677777766666654443221000 012334445555555555555
Q ss_pred HHhcC
Q 010642 87 LFDEI 91 (505)
Q Consensus 87 ~~~~~ 91 (505)
-|+..
T Consensus 305 ~ydha 309 (886)
T KOG4507|consen 305 CYDHA 309 (886)
T ss_pred hhhhh
Confidence 55443
No 397
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=52.36 E-value=41 Score=29.94 Aligned_cols=85 Identities=13% Similarity=0.029 Sum_probs=46.5
Q ss_pred HhccCCHHHHHHHHHHHhhhcCCcCCcc-hHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHHHHHHHH-HHHHhcCchhH
Q 010642 244 CSHCGLVDEGMMFLDRMSKDFGILPNIH-HYGCVVDLLGRAGLLDQAYQLITSM-GVKPDSTIWRTLL-GACRIHKHVTL 320 (505)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll-~~~~~~g~~~~ 320 (505)
|.....++.|+..|.+.+ -+.|++. -|+.=+-.+.+..+++.+..--.+. .+.||.+--..++ .+......+++
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 444455666666555554 3455553 3344455555666666665444433 5556655333333 34455566777
Q ss_pred HHHHHHHHHHh
Q 010642 321 GERVIEHLIEL 331 (505)
Q Consensus 321 a~~~~~~~~~~ 331 (505)
|+..+.+...+
T Consensus 97 aI~~Lqra~sl 107 (284)
T KOG4642|consen 97 AIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHH
Confidence 77777776544
No 398
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=52.26 E-value=2e+02 Score=26.66 Aligned_cols=115 Identities=16% Similarity=0.214 Sum_probs=71.6
Q ss_pred CCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHh-cc-ChHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHH
Q 010642 109 NQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAH-LG-ALEFGEKIHRYISEH-GYGSKMNLCNSLIAMYSKCGSLG 185 (505)
Q Consensus 109 ~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~-~~-~~~~a~~i~~~~~~~-~~~~~~~~~~~l~~~y~~~g~~~ 185 (505)
+....+|+.+|+..... ..+--|..+...+++.... .+ ....--++.+.+... +-.++..+...++..+++.+++.
T Consensus 141 N~~Vv~aL~L~~~~~~~-~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPD-ESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hHHHHHHHHHhhccCcc-cceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 33456677777744221 2355666666666666544 11 223333444444432 34666777778888888888888
Q ss_pred HHHHHHhcCC-----CCChhHHHHHHHHHHhCCChHHHHHHHHH
Q 010642 186 MAFEVFKGMP-----EKDVVSWSAMISGLAMNGHGRDAIESFGA 224 (505)
Q Consensus 186 ~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 224 (505)
+-.++++... ..|...|..+|......|+..-...+.++
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 8888877653 34778888888888888887655555443
No 399
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=52.02 E-value=1e+02 Score=23.33 Aligned_cols=76 Identities=12% Similarity=0.023 Sum_probs=45.7
Q ss_pred cHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchh
Q 010642 46 LMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNR 124 (505)
Q Consensus 46 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 124 (505)
-++|.-|-+.+...+-. ...+--.-+..+...|++++|..+.+.+.-||...|-+|-.. +.|..+++..-+.+|..
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 45555555555443311 223333333446677888888888888888888888777543 55555655555555544
No 400
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=51.60 E-value=2.5e+02 Score=27.71 Aligned_cols=56 Identities=11% Similarity=0.151 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 010642 274 GCVVDLLGRAGLLDQAYQLITSMG--VKPDSTIWRTLLGACRIHKHVTLGERVIEHLI 329 (505)
Q Consensus 274 ~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 329 (505)
..|+.-|...|.+.+|.+.++++| +-...+++.+++.+.-+.|+...-..+++...
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf 570 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECF 570 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 457777888999999999999984 34467788888888888877664444444443
No 401
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=51.45 E-value=69 Score=27.21 Aligned_cols=45 Identities=16% Similarity=0.110 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCC----HHHHHHHHHHH
Q 010642 318 VTLGERVIEHLIELKAQESGDYVLLLNLYSSVGD----WEKVKELREFM 362 (505)
Q Consensus 318 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m 362 (505)
+++|+.-|++.+.++|....++..+.++|...+. ..+|...|++.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 5677778888888999999999999999977653 34555555544
No 402
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=51.41 E-value=2.4e+02 Score=27.32 Aligned_cols=64 Identities=9% Similarity=0.129 Sum_probs=47.8
Q ss_pred CHHHHHHH---HHHHHhcCchhHHHHHHHHHHHhcCC-CCchHHHHHHHH-HhCCCHHHHHHHHHHHHh
Q 010642 301 DSTIWRTL---LGACRIHKHVTLGERVIEHLIELKAQ-ESGDYVLLLNLY-SSVGDWEKVKELREFMNE 364 (505)
Q Consensus 301 ~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~-~~~g~~~~a~~~~~~m~~ 364 (505)
|...|.++ +..+.+.|-+..|.++.+-+..++|. |+-.-...|+.| .+.++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 34444443 35677889999999999999999988 776666777777 477788878888776654
No 403
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=50.85 E-value=2e+02 Score=26.29 Aligned_cols=82 Identities=16% Similarity=0.117 Sum_probs=45.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 010642 167 KMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSH 246 (505)
Q Consensus 167 ~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 246 (505)
++.....+...|.+.|++.+|+.-|-.-..++...+..++.-....|...++ |.+.-..++ -|..
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL~ 153 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYLC 153 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHHH
Confidence 6778888899999999999998887665544444433333333333333222 222222333 3455
Q ss_pred cCCHHHHHHHHHHHhhh
Q 010642 247 CGLVDEGMMFLDRMSKD 263 (505)
Q Consensus 247 ~g~~~~a~~~~~~~~~~ 263 (505)
.+++..|...+....+.
T Consensus 154 l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 154 LGNLRDANELFDTFTSK 170 (260)
T ss_dssp TTBHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 67777777777666653
No 404
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.60 E-value=2.7e+02 Score=27.84 Aligned_cols=213 Identities=13% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCC----------hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC--------HHHHHHHHHHH
Q 010642 82 FEACKLFDEIPQRD----------TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD--------DVTCLLVLQAC 143 (505)
Q Consensus 82 ~~A~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd--------~~t~~~ll~~~ 143 (505)
|+|+...++.++.| ......++.+-.-.|++.+|++-...|++. ..-.|. ...-..+.--|
T Consensus 299 De~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w-~~r~p~~~Llr~~~~~ih~LlGlys 377 (629)
T KOG2300|consen 299 DEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNW-CTRFPTPLLLRAHEAQIHMLLGLYS 377 (629)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HHhCCchHHHHHhHHHHHHHHhhHh
Q ss_pred HhccChHHHHHHHHHHHHcCCCCchhHH--HHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHH--------HHHHHH--h
Q 010642 144 AHLGALEFGEKIHRYISEHGYGSKMNLC--NSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSA--------MISGLA--M 211 (505)
Q Consensus 144 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~--~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~--------li~~~~--~ 211 (505)
...+.++.|+.-|..+.+.--..|...+ ..+.-.|.+.|+.++-.++++.+..+|..++.. ++.|+. .
T Consensus 378 ~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~ 457 (629)
T KOG2300|consen 378 HSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFK 457 (629)
T ss_pred hhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHH
Q ss_pred CCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchH----HHHHHHHHh
Q 010642 212 NGHGRDAIESFGAMQRAG-----VFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHY----GCVVDLLGR 282 (505)
Q Consensus 212 ~g~~~~A~~~~~~m~~~g-----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~----~~li~~~~~ 282 (505)
.+++.+|...+++-.+.. .+...-....+-..+...|+..++.....-...-..-.||..+- ..+-+.|..
T Consensus 458 qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a 537 (629)
T KOG2300|consen 458 QNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQA 537 (629)
T ss_pred hccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHH
Q ss_pred cCC--hHHHHHHHHH
Q 010642 283 AGL--LDQAYQLITS 295 (505)
Q Consensus 283 ~g~--~~~A~~~~~~ 295 (505)
+|. .+...+.|..
T Consensus 538 ~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 538 LGEKGNEMENEAFRK 552 (629)
T ss_pred hCcchhhHHHHHHHH
No 405
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.58 E-value=12 Score=35.00 Aligned_cols=115 Identities=14% Similarity=0.079 Sum_probs=53.8
Q ss_pred ccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHH-HHHHHHHHHHhcCchhHHHH
Q 010642 246 HCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDST-IWRTLLGACRIHKHVTLGER 323 (505)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~ 323 (505)
..|.++.|++.|...+. --+|....|.--...+.+.++...|++-+... .+.||.. -|-.--.+-+..|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 34666666666666554 22223333333344455555555555555444 4444432 23222334445566666666
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 324 VIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
.+....+++-+. .+-..|-...-+.+..++-.+.+++-.
T Consensus 204 dl~~a~kld~dE-~~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 204 DLALACKLDYDE-ANSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHhccccH-HHHHHHHHhccchhhhhhchhHHHHHH
Confidence 666665555321 222233333444444444444444433
No 406
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=50.42 E-value=1.4e+02 Score=26.37 Aligned_cols=92 Identities=14% Similarity=0.209 Sum_probs=44.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCC---CHHHHH--HHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHH
Q 010642 202 WSAMISGLAMNGHGRDAIESFGAMQRAGVFP---DDQTFT--GVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCV 276 (505)
Q Consensus 202 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 276 (505)
.|.|+--|.-...+.+|-+.|.. ..|+.| |..++. .-|......|+++.|+...+.+... -+..|...+-.|
T Consensus 29 ~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~L 105 (228)
T KOG2659|consen 29 LNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFHL 105 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHHH
Confidence 44444444444444444444432 233333 222222 3344556667777777766666543 333343222222
Q ss_pred HH----HHHhcCChHHHHHHHHHC
Q 010642 277 VD----LLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 277 i~----~~~~~g~~~~A~~~~~~~ 296 (505)
.. -+.|.|..++|+++.+.-
T Consensus 106 q~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 106 QQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 21 134667777777777653
No 407
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=49.68 E-value=2.7e+02 Score=27.49 Aligned_cols=235 Identities=8% Similarity=-0.043 Sum_probs=142.2
Q ss_pred HHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHH
Q 010642 37 IKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDAL 116 (505)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 116 (505)
|+++...| ..+...+-..+... ++..++.....++....+......+.+.+..++.........++...+...-.-
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~ 120 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEP 120 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHH
Confidence 66777777 56677666666443 233333333333433333333666677777777777888888888887766655
Q ss_pred HHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 010642 117 CLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE 196 (505)
Q Consensus 117 ~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 196 (505)
.+...+ + .++.......+.++...+. + .......+.+ .++..+-..-+.+....+..+..-.+-.-...
T Consensus 121 ~L~~~L-~-----~~~p~vR~aal~al~~r~~-~-~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d 189 (410)
T TIGR02270 121 WLEPLL-A-----ASEPPGRAIGLAALGAHRH-D-PGPALEAALT---HEDALVRAAALRALGELPRRLSESTLRLYLRD 189 (410)
T ss_pred HHHHHh-c-----CCChHHHHHHHHHHHhhcc-C-hHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHHHHHHHcC
Confidence 554444 3 1344555556666665442 2 2233333333 56777777778888877775544444444556
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHH
Q 010642 197 KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCV 276 (505)
Q Consensus 197 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 276 (505)
.|...-..-+.+....|. ++|...+...... |+......+.......|. +++...+..+.++ +. +-...
T Consensus 190 ~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~---~g~~~~~~l~~~lal~~~-~~a~~~L~~ll~d----~~--vr~~a 258 (410)
T TIGR02270 190 SDPEVRFAALEAGLLAGS-RLAWGVCRRFQVL---EGGPHRQRLLVLLAVAGG-PDAQAWLRELLQA----AA--TRREA 258 (410)
T ss_pred CCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhc---cCccHHHHHHHHHHhCCc-hhHHHHHHHHhcC----hh--hHHHH
Confidence 777777777888888888 6777766664332 222232333333333233 3777777777653 22 55677
Q ss_pred HHHHHhcCChHHHHHHHHHCC
Q 010642 277 VDLLGRAGLLDQAYQLITSMG 297 (505)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~~~ 297 (505)
+.++++.|+...+.-+++.|.
T Consensus 259 ~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 259 LRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred HHHHHHcCCcchHHHHHHHhc
Confidence 888999999998888888885
No 408
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=49.35 E-value=1.7e+02 Score=25.17 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=39.4
Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHcCC--------------CCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 010642 137 LLVLQACAHLGALEFGEKIHRYISEHGY--------------GSKMNLCNSLIAMYSKCGSLGMAFEVFKG 193 (505)
Q Consensus 137 ~~ll~~~~~~~~~~~a~~i~~~~~~~~~--------------~~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 193 (505)
.+++-.|-+..++.+++++++.+-+..+ .+.-.+.|.....+.++|.+|.|..++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 3556667778888888888888776432 22334566777777777877777777764
No 409
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=49.26 E-value=1.2e+02 Score=23.28 Aligned_cols=80 Identities=11% Similarity=0.116 Sum_probs=48.1
Q ss_pred cChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 010642 147 GALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQ 226 (505)
Q Consensus 147 ~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 226 (505)
...++|..|.+.+...+. ....+--.-+..+.+.|++++|...=.....||...|-++-. .+.|-.+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 356788888888777653 334444445556777888888855555555677777766543 46677777777777665
Q ss_pred HCC
Q 010642 227 RAG 229 (505)
Q Consensus 227 ~~g 229 (505)
.+|
T Consensus 97 ~~g 99 (116)
T PF09477_consen 97 SSG 99 (116)
T ss_dssp T-S
T ss_pred hCC
Confidence 543
No 410
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=48.98 E-value=76 Score=23.48 Aligned_cols=53 Identities=9% Similarity=0.045 Sum_probs=36.2
Q ss_pred HHhcCchhHHHHHHHHHHHhcC----CC-----CchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 312 CRIHKHVTLGERVIEHLIELKA----QE-----SGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 312 ~~~~g~~~~a~~~~~~~~~~~~----~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
..+.|++..|.+.+.+...... .. ......+.......|++++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3467888888776666554431 11 12334567788899999999999998764
No 411
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=48.79 E-value=1.2e+02 Score=23.24 Aligned_cols=78 Identities=12% Similarity=0.009 Sum_probs=45.4
Q ss_pred CCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHch
Q 010642 44 CSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLN 123 (505)
Q Consensus 44 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 123 (505)
...++|..|.+.+...+- ....+--.-+..+...|++++|...=.....||..+|-+|-. .+.|..+++..-+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 446677777777766552 233333444455667788888855545555577777776644 46677777777777664
Q ss_pred h
Q 010642 124 R 124 (505)
Q Consensus 124 ~ 124 (505)
.
T Consensus 97 ~ 97 (116)
T PF09477_consen 97 S 97 (116)
T ss_dssp T
T ss_pred h
Confidence 4
No 412
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=48.72 E-value=22 Score=28.36 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=25.5
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010642 210 AMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSAC 244 (505)
Q Consensus 210 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 244 (505)
-..|.-.+|..+|++|++.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456677899999999999999986 56666554
No 413
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=47.76 E-value=2.9e+02 Score=27.31 Aligned_cols=63 Identities=16% Similarity=0.071 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 010642 305 WRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGL 367 (505)
Q Consensus 305 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 367 (505)
...|+.-|...|+..+|.+..+++---.-.....+.+++.+..+.|+-+..+.+++..-+.|+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 445777788888888887776554221122345777899999999998888888887777665
No 414
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=47.76 E-value=2.9e+02 Score=27.29 Aligned_cols=181 Identities=14% Similarity=0.012 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 010642 131 PDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLA 210 (505)
Q Consensus 131 pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~ 210 (505)
++...-..+..++...+..+....+. .+.+ .+++.+..+.+.+....+. +-...+..-+..+|...-..-+.++.
T Consensus 98 ~~~~vr~aaa~ALg~i~~~~a~~~L~-~~L~---~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG 172 (410)
T TIGR02270 98 GPEGLCAGIQAALGWLGGRQAEPWLE-PLLA---ASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALG 172 (410)
T ss_pred CCHHHHHHHHHHHhcCCchHHHHHHH-HHhc---CCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 45556667777777776655554433 3333 2344555555566654432 22222333334566666666666666
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHH
Q 010642 211 MNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAY 290 (505)
Q Consensus 211 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 290 (505)
..+.. ++...+..+.. .+|...=...+.+....|. ++|...+...... ++..+...+...+... ..+++.
T Consensus 173 ~l~~~-~a~~~L~~al~---d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~----~g~~~~~~l~~~lal~-~~~~a~ 242 (410)
T TIGR02270 173 ELPRR-LSESTLRLYLR---DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVL----EGGPHRQRLLVLLAVA-GGPDAQ 242 (410)
T ss_pred hhccc-cchHHHHHHHc---CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhc----cCccHHHHHHHHHHhC-CchhHH
Confidence 66654 33444444432 2455555556666677777 5666555553322 3333433444444333 333666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010642 291 QLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHL 328 (505)
Q Consensus 291 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 328 (505)
+.+...--.++ +-...+.++.+.|+.....-+.+.+
T Consensus 243 ~~L~~ll~d~~--vr~~a~~AlG~lg~p~av~~L~~~l 278 (410)
T TIGR02270 243 AWLRELLQAAA--TRREALRAVGLVGDVEAAPWCLEAM 278 (410)
T ss_pred HHHHHHhcChh--hHHHHHHHHHHcCCcchHHHHHHHh
Confidence 66666522333 4445566666777665444444433
No 415
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=47.71 E-value=96 Score=30.47 Aligned_cols=109 Identities=17% Similarity=0.198 Sum_probs=55.8
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhc---CC
Q 010642 209 LAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRA---GL 285 (505)
Q Consensus 209 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~ 285 (505)
+...|++.+|+..|+.+... ..+.......+.+++.+++...++- ....-+..-.+. ..
T Consensus 214 ~~t~gKF~eA~~~Fr~iL~~----------i~l~vv~~~~E~~e~~eli~icrEY--------ilgl~iEl~Rr~l~~~~ 275 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSILHS----------IPLLVVESREEEDEAKELIEICREY--------ILGLSIELERRELPKDP 275 (422)
T ss_dssp HHHTT-HHHHHHHHHHHHHH----------HHC--BSSCHHHHHHHHHHHHHHHH--------HHHHHHHHHHCTS-TTT
T ss_pred HHhcCCHHHHHHHHHHHHHH----------hheeeecCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhccccc
Confidence 34688999999999887642 2222222333344555554444331 111111111111 11
Q ss_pred hHHHH---H---HHHHCCCCCCH--HHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 010642 286 LDQAY---Q---LITSMGVKPDS--TIWRTLLGACRIHKHVTLGERVIEHLIELKAQE 335 (505)
Q Consensus 286 ~~~A~---~---~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 335 (505)
.++.. + +|....++|.. .+++.-+..+.+++++..|..+.++++++.|+.
T Consensus 276 ~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 276 VEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred hhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 22221 2 22222566643 356677788889999999999999999998754
No 416
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=47.58 E-value=3.1e+02 Score=27.59 Aligned_cols=277 Identities=10% Similarity=0.042 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcC
Q 010642 12 EEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEI 91 (505)
Q Consensus 12 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 91 (505)
+.|.+.++-..+. +.......-.+.-...+.+...++++..++. -|+...|+..|+.+...-.......+...+
T Consensus 268 ~laqr~l~i~~~t----dl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~ 341 (568)
T KOG2396|consen 268 DLAQRELEILSQT----DLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTM 341 (568)
T ss_pred HHHHHHHHHHHHh----hccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q ss_pred C------------CCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhc--cChHHHHHHHH
Q 010642 92 P------------QRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHL--GALEFGEKIHR 157 (505)
Q Consensus 92 ~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~--~~~~~a~~i~~ 157 (505)
. +-...-|..+.-.+.......++...+.. .++..|...|..-+....+. .---.-...+.
T Consensus 342 ~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~-----e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n 416 (568)
T KOG2396|consen 342 CVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTT-----ELFRDSGKMWQLKLQVLIESKSDFQMLFEELFN 416 (568)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhH-----HHhcchHHHHHHHHHHHHhhcchhHHHHHHHHH
Q ss_pred HHHHcCCCCchhHHHHHH-HHHHhcCCHHHHHHHHhcCCCCChhH-HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 010642 158 YISEHGYGSKMNLCNSLI-AMYSKCGSLGMAFEVFKGMPEKDVVS-WSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQ 235 (505)
Q Consensus 158 ~~~~~~~~~~~~~~~~l~-~~y~~~g~~~~A~~~~~~m~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 235 (505)
...+.-..+....+++.. ..+......+.....+..+..++..+ -+..+..+.+.|-..+|...|..+... .+|+..
T Consensus 417 ~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~ 495 (568)
T KOG2396|consen 417 HLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLD 495 (568)
T ss_pred HHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHH
Q ss_pred HHHHHHH---HHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC--CCCCCHH
Q 010642 236 TFTGVLS---ACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM--GVKPDST 303 (505)
Q Consensus 236 t~~~ll~---~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~ 303 (505)
.|..+++ ....+| +.-+..+|+.+...+| .|+..|--.+..=...|..+.+-.++.++ .++|...
T Consensus 496 l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~~ 565 (568)
T KOG2396|consen 496 LFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQGESA 565 (568)
T ss_pred HHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHHHHhhChhhh
No 417
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=47.24 E-value=1.6e+02 Score=24.10 Aligned_cols=76 Identities=8% Similarity=0.161 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC---------CCChhHHHHHHHHHHhCCC-hHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010642 172 NSLIAMYSKCGSLGMAFEVFKGMP---------EKDVVSWSAMISGLAMNGH-GRDAIESFGAMQRAGVFPDDQTFTGVL 241 (505)
Q Consensus 172 ~~l~~~y~~~g~~~~A~~~~~~m~---------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll 241 (505)
|.++.-...-+++.....+++.+. ..+..+|+.++.+.++..- ---+..+|..|++.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444444444444444444332 2345567777777755554 334566777777777777777777777
Q ss_pred HHHhcc
Q 010642 242 SACSHC 247 (505)
Q Consensus 242 ~~~~~~ 247 (505)
.++.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 777654
No 418
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=46.17 E-value=93 Score=22.63 Aligned_cols=61 Identities=11% Similarity=0.116 Sum_probs=37.4
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHH
Q 010642 154 KIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDA 218 (505)
Q Consensus 154 ~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 218 (505)
.++..+.+.|+-. ....-...+...+.+.|.++++.++.++..+|..+..++-..|...-|
T Consensus 20 ~v~~~L~~~~Vlt----~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 20 YLWDHLLSRGVFT----PDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHhcCCCC----HHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 4555555555322 222222334455677788888888888888888888877776655433
No 419
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=46.16 E-value=1.5e+02 Score=23.51 Aligned_cols=42 Identities=17% Similarity=0.312 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHh
Q 010642 151 FGEKIHRYISEHGYGS-KMNLCNSLIAMYSKCGSLGMAFEVFK 192 (505)
Q Consensus 151 ~a~~i~~~~~~~~~~~-~~~~~~~l~~~y~~~g~~~~A~~~~~ 192 (505)
.+.++|..|...|+-. ....|......+.+.|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6777777777766544 34556667777777777777777775
No 420
>PHA02875 ankyrin repeat protein; Provisional
Probab=44.40 E-value=3.2e+02 Score=26.80 Aligned_cols=200 Identities=12% Similarity=0.005 Sum_probs=93.6
Q ss_pred HHHHHHHhCCCCCChhh--HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhCCCHHHHHHHHhcC
Q 010642 16 YLFEKMRQKRIPTNPFA--CSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQ--LMTTLMDLYSTFEKSFEACKLFDEI 91 (505)
Q Consensus 16 ~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~ 91 (505)
++++.+.+.|..|+... ..+.+..++..|+.+ +.+.+++.|..|+.. .....+...++.|+.+.+..+++.-
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~ 91 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLG 91 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcC
Confidence 34455556676665432 234455555666654 444555666544422 1123344556788888887777654
Q ss_pred CCC----ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHH--HHHHHHHHHhccChHHHHHHHHHHHHcCCC
Q 010642 92 PQR----DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVT--CLLVLQACAHLGALEFGEKIHRYISEHGYG 165 (505)
Q Consensus 92 ~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t--~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~ 165 (505)
... +..-++ .+...+..|+.+-+..++ + .|..|+... -.+.+...+..|+.+.+..+ .+.|..
T Consensus 92 ~~~~~~~~~~g~t-pL~~A~~~~~~~iv~~Ll----~--~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L----l~~g~~ 160 (413)
T PHA02875 92 KFADDVFYKDGMT-PLHLATILKKLDIMKLLI----A--RGADPDIPNTDKFSPLHLAVMMGDIKGIELL----IDHKAC 160 (413)
T ss_pred CcccccccCCCCC-HHHHHHHhCCHHHHHHHH----h--CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhcCCC
Confidence 321 111122 233344556654333333 3 344443211 11233344556665544433 344433
Q ss_pred Cchh--HHHHHHHHHHhcCCHHHHHHHHhcCCCCChhH---HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 010642 166 SKMN--LCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVS---WSAMISGLAMNGHGRDAIESFGAMQRAGVFPDD 234 (505)
Q Consensus 166 ~~~~--~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 234 (505)
++.. ...+.+...+..|+.+-+.-+++.-..++... ..+.+..-+..|+. ++.+.+.+.|..|+.
T Consensus 161 ~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv~~Ll~~gad~n~ 230 (413)
T PHA02875 161 LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIVRLFIKRGADCNI 230 (413)
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHHHHHHHCCcCcch
Confidence 3211 12233444556677777766666544433221 12333323344544 334444556666554
No 421
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.25 E-value=47 Score=30.71 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010642 201 SWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVL 241 (505)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 241 (505)
-|+..|..-.+.|+.++|+.++++..+.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 36788888888888889999888888888775555655443
No 422
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=44.15 E-value=1.2e+02 Score=24.58 Aligned_cols=63 Identities=11% Similarity=0.102 Sum_probs=43.9
Q ss_pred hHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCC
Q 010642 286 LDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGD 351 (505)
Q Consensus 286 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 351 (505)
-+.|.++.+-|| .....-.........|++..|..+.+.+...+|.+...-....++|...|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 456777788775 233334445566788999999999999999999988877777777766553
No 423
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=43.99 E-value=38 Score=22.91 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=20.0
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010642 198 DVVSWSAMISGLAMNGHGRDAIESFGAMQR 227 (505)
Q Consensus 198 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 227 (505)
|..-.-.+|.+|.+.|++++|.+++.++..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344567788888888888888777654
No 424
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=43.60 E-value=4.3e+02 Score=28.19 Aligned_cols=184 Identities=20% Similarity=0.246 Sum_probs=102.7
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHH----------HHHHHHHHHHhccChHHHHHHHHHHHHcC--
Q 010642 96 TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDV----------TCLLVLQACAHLGALEFGEKIHRYISEHG-- 163 (505)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~----------t~~~ll~~~~~~~~~~~a~~i~~~~~~~~-- 163 (505)
..+-..|+-.|-...+++..+++.+.+++ + ||.. .|...++--.+.|+-++|..+.--+++..
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~----i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~ 275 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKR----I-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGP 275 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHh----C-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCC
Confidence 34556677778888889999998888866 2 3322 23334444445677778877766666542
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH---HHHH
Q 010642 164 YGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQT---FTGV 240 (505)
Q Consensus 164 ~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~l 240 (505)
+.|| +||-+|++ |+.|- +-+.|...+..+.|.+.|++.-+ +.|+..+ +..|
T Consensus 276 vapD---------m~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atL 329 (1226)
T KOG4279|consen 276 VAPD---------MYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATL 329 (1226)
T ss_pred CCCc---------eeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHH
Confidence 2333 45555543 33331 12234445556677888887766 5666542 3334
Q ss_pred HHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhH
Q 010642 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTL 320 (505)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 320 (505)
+.+-.+. ++...+ ++.- | ..|-..+++.|.+++..++++-. + .+.+-...+++..
T Consensus 330 L~aaG~~--Fens~E----lq~I-g--------mkLn~LlgrKG~leklq~YWdV~-------~---y~~asVLAnd~~k 384 (1226)
T KOG4279|consen 330 LRAAGEH--FENSLE----LQQI-G--------MKLNSLLGRKGALEKLQEYWDVA-------T---YFEASVLANDYQK 384 (1226)
T ss_pred HHHhhhh--ccchHH----HHHH-H--------HHHHHHhhccchHHHHHHHHhHH-------H---hhhhhhhccCHHH
Confidence 4332211 111111 1110 1 12334467777777776666432 2 2344455677888
Q ss_pred HHHHHHHHHHhcCCC
Q 010642 321 GERVIEHLIELKAQE 335 (505)
Q Consensus 321 a~~~~~~~~~~~~~~ 335 (505)
|.+..+.|.++.||.
T Consensus 385 aiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 385 AIQAAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHHHHhccCCce
Confidence 888888888888764
No 425
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.46 E-value=4.8e+02 Score=28.62 Aligned_cols=175 Identities=14% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCC-------hhHHHHHHHHHHhCCCh--HHHHHHHHHHHHCCCCCCHHHHHH--
Q 010642 171 CNSLIAMYSKCGSLGMAFEVFKGMPEKD-------VVSWSAMISGLAMNGHG--RDAIESFGAMQRAGVFPDDQTFTG-- 239 (505)
Q Consensus 171 ~~~l~~~y~~~g~~~~A~~~~~~m~~~~-------~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~-- 239 (505)
|..|+..|...|+.++|.+++.+....+ ...+-..+.-+-+.+.. +-++++-+...+....-....|..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Q ss_pred ----------HHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCC-----------------hHHHHHH
Q 010642 240 ----------VLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGL-----------------LDQAYQL 292 (505)
Q Consensus 240 ----------ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-----------------~~~A~~~ 292 (505)
.+-.|......+-+..+++.+... .-.++....+.++..|++.=+ .+....+
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~-~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISD-NRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHh-ccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Q ss_pred HHHC---------CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH--------------hcCCCCchHHHHHHHH
Q 010642 293 ITSM---------GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIE--------------LKAQESGDYVLLLNLY 346 (505)
Q Consensus 293 ~~~~---------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------------~~~~~~~~~~~l~~~~ 346 (505)
++.- ..-|...-|.-..-.+.+.|+.++|..++-..+. .++.+...|..++..|
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~ 742 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIY 742 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHH
No 426
>PHA02875 ankyrin repeat protein; Provisional
Probab=42.73 E-value=2.6e+02 Score=27.48 Aligned_cols=192 Identities=12% Similarity=0.014 Sum_probs=93.8
Q ss_pred HHHHHHchhccCCCCCCHHH--HHHHHHHHHhccChHHHHHHHHHHHHcCCCCchh--HHHHHHHHHHhcCCHHHHHHHH
Q 010642 116 LCLFDNLNREESGCKPDDVT--CLLVLQACAHLGALEFGEKIHRYISEHGYGSKMN--LCNSLIAMYSKCGSLGMAFEVF 191 (505)
Q Consensus 116 ~~~~~~m~~~~~~~~pd~~t--~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~--~~~~l~~~y~~~g~~~~A~~~~ 191 (505)
.++++.+.+ .|..|+... -.+.+..++..|+.+-+ +.+.+.|..++.. .....+...++.|+.+.+..++
T Consensus 15 ~~iv~~Ll~--~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 15 LDIARRLLD--IGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHHHHH--CCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH
Confidence 455666666 677776532 23445555667776544 4445566544422 1233455667889988888888
Q ss_pred hcCCCCC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHhccCCHHHHHHHHHHHhhhcC
Q 010642 192 KGMPEKD----VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTF--TGVLSACSHCGLVDEGMMFLDRMSKDFG 265 (505)
Q Consensus 192 ~~m~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 265 (505)
+.-...+ ..-++.+ ...+..|+. ++++.+.+.|..|+.... .+.+...+..|+.+-...+++. |
T Consensus 89 ~~~~~~~~~~~~~g~tpL-~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~-----g 158 (413)
T PHA02875 89 DLGKFADDVFYKDGMTPL-HLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH-----K 158 (413)
T ss_pred HcCCcccccccCCCCCHH-HHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc-----C
Confidence 7543211 1112222 223345554 455555666766654211 1223334456776554444432 4
Q ss_pred CcCC---cchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCchhHHHHHH
Q 010642 266 ILPN---IHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTI---WRTLLGACRIHKHVTLGERVI 325 (505)
Q Consensus 266 ~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~---~~~ll~~~~~~g~~~~a~~~~ 325 (505)
..++ ..-.+.| ...+..|+.+-+.-+++ .|..|+... ..+++......|+.+.+.-++
T Consensus 159 ~~~~~~d~~g~TpL-~~A~~~g~~eiv~~Ll~-~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll 222 (413)
T PHA02875 159 ACLDIEDCCGCTPL-IIAMAKGDIAICKMLLD-SGANIDYFGKNGCVAALCYAIENNKIDIVRLFI 222 (413)
T ss_pred CCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHH
Confidence 4332 2222333 33445566655544444 344443221 124444445666665444333
No 427
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=42.63 E-value=86 Score=19.85 Aligned_cols=34 Identities=9% Similarity=0.259 Sum_probs=22.4
Q ss_pred HHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 010642 40 CMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMD 73 (505)
Q Consensus 40 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 73 (505)
..+.|-.+++..+++.|.+.|+..+..++..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666677777777777777666666665553
No 428
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=42.40 E-value=2.6e+02 Score=25.18 Aligned_cols=115 Identities=15% Similarity=0.061 Sum_probs=72.5
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcch-HHHHHHHHHhcCCh
Q 010642 209 LAMNGHGRDAIESFGAMQRAGVFPDDQT-FTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHH-YGCVVDLLGRAGLL 286 (505)
Q Consensus 209 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~ 286 (505)
|....+++.|+..|.+... +.|+..+ |..=+.++.+..+++.+.+-=.+.. .+.||..- ..-+...+.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrral---ql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRAL---QLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH---hcChHHHHHHHHHHHHHHhhccc
Confidence 4445678899998877776 6777744 4555667777888877766544444 45666443 33444556677778
Q ss_pred HHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010642 287 DQAYQLITSM-------GVKPDSTIWRTLLGACRIHKHVTLGERVIEHL 328 (505)
Q Consensus 287 ~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 328 (505)
++|...+.+. ++.|-...+..|..+--+.=...+..++.+..
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 8887777665 55566667777776644444445555554443
No 429
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=40.49 E-value=1.5e+02 Score=29.13 Aligned_cols=57 Identities=9% Similarity=0.063 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHCCCC---------C-CHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 010642 273 YGCVVDLLGRAGLLDQAYQLITSMGVK---------P-DSTIWRTLLGACRIHKHVTLGERVIEHLI 329 (505)
Q Consensus 273 ~~~li~~~~~~g~~~~A~~~~~~~~~~---------p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 329 (505)
.-.|++.++-.|++..|+++++.+.+. + ...++.-+.-+|...+++.+|.+.|...+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677788888888888777221 1 23355556666777788888888877754
No 430
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.75 E-value=51 Score=30.51 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=19.5
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHchhccCCCC
Q 010642 99 WNVLISCYIRNQRTRDALCLFDNLNREESGCK 130 (505)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 130 (505)
||..|....+.||.++|+.++++.++ .|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~--LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAER--LGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCc
Confidence 45666666666666666666666666 5554
No 431
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=39.42 E-value=1.8e+02 Score=23.67 Aligned_cols=64 Identities=6% Similarity=0.092 Sum_probs=43.5
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 010642 16 YLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEK 80 (505)
Q Consensus 16 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 80 (505)
++.+.+.+.|.++++.- ..++..+...++.-.|.+++..+.+.++..+..|.-.-++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 34556677787766553 44677777777778899999999988766655544445556666653
No 432
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.56 E-value=2.9e+02 Score=24.76 Aligned_cols=57 Identities=12% Similarity=0.235 Sum_probs=28.6
Q ss_pred HhcCChHHHHHHHHHC---CCCCCHHHHHH---HHH-H-HH-hcCchhHHHHHHHHHHHhcCCCCc
Q 010642 281 GRAGLLDQAYQLITSM---GVKPDSTIWRT---LLG-A-CR-IHKHVTLGERVIEHLIELKAQESG 337 (505)
Q Consensus 281 ~~~g~~~~A~~~~~~~---~~~p~~~~~~~---ll~-~-~~-~~g~~~~a~~~~~~~~~~~~~~~~ 337 (505)
+..+++.+|.++|++. .+..+..-|.. ++. + |- -..+.-.+...+++..+..|.-..
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 3456666677776665 22222222221 111 1 21 125556667777777777765433
No 433
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=38.22 E-value=2e+02 Score=28.16 Aligned_cols=56 Identities=16% Similarity=0.145 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC-----------CChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 010642 171 CNSLIAMYSKCGSLGMAFEVFKGMPE-----------KDVVSWSAMISGLAMNGHGRDAIESFGAMQ 226 (505)
Q Consensus 171 ~~~l~~~y~~~g~~~~A~~~~~~m~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 226 (505)
...|++.++-.|++..|.++++.+.- -.+.++--+.-+|...+++.+|.+.|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777766541 133455566667777777777777777654
No 434
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=38.07 E-value=1.1e+02 Score=28.83 Aligned_cols=84 Identities=10% Similarity=0.014 Sum_probs=54.6
Q ss_pred HHHHhcCChHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCC
Q 010642 278 DLLGRAGLLDQAYQLITSM----GVKP--DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGD 351 (505)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~----~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 351 (505)
.-|.+..++..|...|.+. --.| +.+.|+.-..+-...|++..++.-..+....+|.+...|..=..++....+
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~ 168 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELER 168 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHH
Confidence 3466667777777777665 1122 355666666666667888888888888888888777777666666666666
Q ss_pred HHHHHHHHHH
Q 010642 352 WEKVKELREF 361 (505)
Q Consensus 352 ~~~a~~~~~~ 361 (505)
+++|....++
T Consensus 169 ~~~a~nw~ee 178 (390)
T KOG0551|consen 169 FAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHhh
Confidence 5555554443
No 435
>PRK10941 hypothetical protein; Provisional
Probab=37.91 E-value=3.3e+02 Score=25.07 Aligned_cols=59 Identities=10% Similarity=0.033 Sum_probs=27.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHhhh
Q 010642 203 SAMISGLAMNGHGRDAIESFGAMQRAGVFPDD-QTFTGVLSACSHCGLVDEGMMFLDRMSKD 263 (505)
Q Consensus 203 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (505)
+.+-.+|.+.++++.|+...+.+.. +.|+. .-+.--.-.|.+.|.+..|..=++...+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3344455555555555555555554 23332 12222223345555555555555554443
No 436
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=37.87 E-value=2.2e+02 Score=29.54 Aligned_cols=62 Identities=13% Similarity=0.272 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 010642 132 DDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP 195 (505)
Q Consensus 132 d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 195 (505)
+.....-++..|.+.|-.+.+..+.+.+-..-. ...-|..-+..+.++|+......+-+.+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455667778888888888888888776654421 22345666777788888776666655443
No 437
>PF15469 Sec5: Exocyst complex component Sec5
Probab=37.17 E-value=2.6e+02 Score=23.73 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=12.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHhh
Q 010642 240 VLSACSHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~ 262 (505)
-|.-|.+.|+++.+...|.+...
T Consensus 92 ~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 92 NLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHH
Confidence 34445555666665555555543
No 438
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=37.13 E-value=1.6e+02 Score=23.75 Aligned_cols=32 Identities=16% Similarity=0.089 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHhcCCCC
Q 010642 305 WRTLLGACRIHKHVTLGERVIEHLIELKAQES 336 (505)
Q Consensus 305 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 336 (505)
..-|.-++.+.++++.+.++.+.+++.+|+|.
T Consensus 74 lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 74 LYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 33455677888999999999999998888764
No 439
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=37.10 E-value=3.3e+02 Score=24.87 Aligned_cols=82 Identities=15% Similarity=0.109 Sum_probs=41.1
Q ss_pred HHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCC-----CHHHHHHHHHHHHhccCh
Q 010642 75 YSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKP-----DDVTCLLVLQACAHLGAL 149 (505)
Q Consensus 75 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-----d~~t~~~ll~~~~~~~~~ 149 (505)
|+|.=+...=..+|+....| ..|..-+.+.|+.+.|-.++--+... .+... +...-.-++......+++
T Consensus 163 C~RKtE~~~W~~LF~~lg~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~-e~~~~~~~~~~~~~al~LL~~a~~~~~w 236 (258)
T PF07064_consen 163 CARKTEVRYWPYLFDYLGSP-----RDLFEECLENGNLKTAASYLLVLQNL-EGSSVVKDEESRQCALRLLVMALESGDW 236 (258)
T ss_pred HHHhhHHHHHHHHHHhcCCH-----HHHHHHHHHcCcHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHHHHHHHHhcccH
Confidence 44443344444455544322 24555666677777766655555431 11111 222333455555666666
Q ss_pred HHHHHHHHHHHHc
Q 010642 150 EFGEKIHRYISEH 162 (505)
Q Consensus 150 ~~a~~i~~~~~~~ 162 (505)
+.+.++.+.+...
T Consensus 237 ~Lc~eL~RFL~~l 249 (258)
T PF07064_consen 237 DLCFELVRFLKAL 249 (258)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666665544
No 440
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=36.44 E-value=60 Score=21.92 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 338 DYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 338 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
....++.+|...|++++|.++.+.+.+
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455788889999999999988887753
No 441
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=36.23 E-value=2.9e+02 Score=23.92 Aligned_cols=18 Identities=22% Similarity=0.512 Sum_probs=14.3
Q ss_pred HhCCCHHHHHHHHHHHHh
Q 010642 347 SSVGDWEKVKELREFMNE 364 (505)
Q Consensus 347 ~~~g~~~~a~~~~~~m~~ 364 (505)
.+.|+++.|.+.++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 467889999988888865
No 442
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.35 E-value=1.6e+02 Score=30.37 Aligned_cols=86 Identities=13% Similarity=0.011 Sum_probs=64.9
Q ss_pred HHhcCChHHHHHHHHHC-CCCC-C------HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCC
Q 010642 280 LGRAGLLDQAYQLITSM-GVKP-D------STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGD 351 (505)
Q Consensus 280 ~~~~g~~~~A~~~~~~~-~~~p-~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 351 (505)
..+..++..+.++|..- ..-| | ....+.|--+|....+.+.|.++++++.+.+|.++-+-..+..+....|+
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc
Confidence 34566777777777643 1111 1 23456666778888999999999999999999888888888888899999
Q ss_pred HHHHHHHHHHHHhC
Q 010642 352 WEKVKELREFMNEK 365 (505)
Q Consensus 352 ~~~a~~~~~~m~~~ 365 (505)
-++|+.........
T Consensus 444 Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 444 SEEALTCLQKIKSS 457 (872)
T ss_pred hHHHHHHHHHHHhh
Confidence 99999888776543
No 443
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=35.25 E-value=1.8e+02 Score=27.06 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=12.3
Q ss_pred ChhHHHHHHHHHHhCCChHHHH
Q 010642 198 DVVSWSAMISGLAMNGHGRDAI 219 (505)
Q Consensus 198 ~~~~~~~li~~~~~~g~~~~A~ 219 (505)
|+..|..+..||.-.|+...+.
T Consensus 196 d~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 196 DPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred CHHHHHHHHHHHHHHhhhHHHH
Confidence 5555666666666555554443
No 444
>PF13934 ELYS: Nuclear pore complex assembly
Probab=34.80 E-value=3.3e+02 Score=24.23 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=8.0
Q ss_pred HHHHHhCCChHHHHHHHHH
Q 010642 206 ISGLAMNGHGRDAIESFGA 224 (505)
Q Consensus 206 i~~~~~~g~~~~A~~~~~~ 224 (505)
+.++...|+.+.|+.+++.
T Consensus 115 l~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 115 LQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHCCChhHHHHHHHh
Confidence 3333334444444444443
No 445
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=34.48 E-value=98 Score=20.95 Aligned_cols=45 Identities=9% Similarity=0.096 Sum_probs=17.7
Q ss_pred cCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHH-----HhCCCHHHHHHH
Q 010642 43 FCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLY-----STFEKSFEACKL 87 (505)
Q Consensus 43 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-----~~~g~~~~A~~~ 87 (505)
.|++=+|-++++.+-.....+....+..||.+. .+.|+...|.++
T Consensus 12 ~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 12 AGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp TT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred CCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 344444444444443222222333333333321 234555555544
No 446
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=34.04 E-value=4.9e+02 Score=26.60 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHchh
Q 010642 98 AWNVLISCYIRNQRTRDALCLFDNLNR 124 (505)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 124 (505)
....++.-|.+.++.++|..++..|.-
T Consensus 410 ~~~eL~~~yl~~~qi~eAi~lL~smnW 436 (545)
T PF11768_consen 410 GLVELISQYLRCDQIEEAINLLLSMNW 436 (545)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCCc
Confidence 344677788888888888888888844
No 447
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=33.59 E-value=1.8e+02 Score=24.47 Aligned_cols=62 Identities=16% Similarity=0.053 Sum_probs=41.6
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHH
Q 010642 225 MQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQ 288 (505)
Q Consensus 225 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 288 (505)
++..|++++..-. .++..+...+..-.|.++++.+.+. +..++..|...-++.+.+.|-+.+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEEE
Confidence 4566777665443 4444555556666788888888876 666676666666788888887753
No 448
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=33.22 E-value=4.7e+02 Score=25.51 Aligned_cols=55 Identities=15% Similarity=0.114 Sum_probs=37.7
Q ss_pred HHHccCCcHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHh--CCCHHHHHHHHhcCCCC
Q 010642 39 CCMKFCSLMGGLQIHARVLRDGYQLDSQ--LMTTLMDLYST--FEKSFEACKLFDEIPQR 94 (505)
Q Consensus 39 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~--~g~~~~A~~~~~~~~~~ 94 (505)
.+-..+++..|.+++..+... ++++.. .+..|..+|.. .-++++|.+.|+.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344678888888888888876 554444 45556666655 45677888888877654
No 449
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=33.19 E-value=2e+02 Score=21.21 Aligned_cols=57 Identities=11% Similarity=0.134 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCC
Q 010642 154 KIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGH 214 (505)
Q Consensus 154 ~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 214 (505)
.++..+.+.|+-.+. ..-...+..-+.+.+.++++.++.+++.+|..+..++-..+.
T Consensus 24 ~v~~~L~~~gvlt~~----~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 24 ELLIHLLQKDILTDS----MAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHcCCCCHH----HHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 355555555532221 122222344567777788887777777788877777765444
No 450
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=33.16 E-value=3.8e+02 Score=24.45 Aligned_cols=87 Identities=22% Similarity=0.269 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCC-------chHHHHHHH
Q 010642 273 YGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQES-------GDYVLLLNL 345 (505)
Q Consensus 273 ~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~ 345 (505)
|..++-.|.|.-....=..+|...| .| ..|+.-|.+.|+++.|-.++--+...++.+. ..-.-|+.+
T Consensus 156 ~l~Ivv~C~RKtE~~~W~~LF~~lg-~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~ 229 (258)
T PF07064_consen 156 YLEIVVNCARKTEVRYWPYLFDYLG-SP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVM 229 (258)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHhcC-CH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHH
Confidence 3344444455444444556666665 34 2577888899999999888887776664332 223357788
Q ss_pred HHhCCCHHHHHHHHHHHHhC
Q 010642 346 YSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 346 ~~~~g~~~~a~~~~~~m~~~ 365 (505)
....|+|+-+.++.+=+..-
T Consensus 230 a~~~~~w~Lc~eL~RFL~~l 249 (258)
T PF07064_consen 230 ALESGDWDLCFELVRFLKAL 249 (258)
T ss_pred HHhcccHHHHHHHHHHHHHh
Confidence 88999999999998877643
No 451
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=33.12 E-value=2.4e+02 Score=22.98 Aligned_cols=61 Identities=18% Similarity=0.161 Sum_probs=27.0
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCCh
Q 010642 224 AMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLL 286 (505)
Q Consensus 224 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 286 (505)
.+++.|++++..- ..++..+.+.++.-.|..+++.+.+. +...+..|...-++.+...|-+
T Consensus 11 ~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 11 RLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCCCE
Confidence 3344454444322 23344444444445555555555543 3333333333334555555543
No 452
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=33.05 E-value=2.9e+02 Score=23.66 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=14.7
Q ss_pred HHHHhccCCHHHHHHHHHHHhh
Q 010642 241 LSACSHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~ 262 (505)
+-.|.+.|.+++|.+++++..+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3356677777777777777654
No 453
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=32.20 E-value=2e+02 Score=21.01 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=28.6
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 010642 154 KIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP 195 (505)
Q Consensus 154 ~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 195 (505)
++|+.....|+..|+.+|..+++...-+=..+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 677777777777777777777776665555665556655553
No 454
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=31.87 E-value=4.3e+02 Score=24.68 Aligned_cols=78 Identities=6% Similarity=-0.082 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHcCC----CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-CChhHHHHHHHHHHhCCChHHHHHHHHH
Q 010642 150 EFGEKIHRYISEHGY----GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE-KDVVSWSAMISGLAMNGHGRDAIESFGA 224 (505)
Q Consensus 150 ~~a~~i~~~~~~~~~----~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~ 224 (505)
+.+.+.+......+. ..++.....+.....+.|..+.-..+++.... ++......++.+++...+.+...++++.
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~ 226 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDL 226 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHH
Confidence 445555555554311 22334444444444555554443333333322 2333444444444444444444444444
Q ss_pred HHH
Q 010642 225 MQR 227 (505)
Q Consensus 225 m~~ 227 (505)
...
T Consensus 227 ~l~ 229 (324)
T PF11838_consen 227 LLS 229 (324)
T ss_dssp HHC
T ss_pred HcC
Confidence 444
No 455
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=31.77 E-value=2.6e+02 Score=22.16 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHhc--CCCCchHHHHHHHHHhCCCHHHHHHHHH
Q 010642 319 TLGERVIEHLIELK--AQESGDYVLLLNLYSSVGDWEKVKELRE 360 (505)
Q Consensus 319 ~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 360 (505)
+....+|..|...+ ...+..|...+..+...|++.+|.++++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34567788877765 3445567788888889999999998885
No 456
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=31.61 E-value=75 Score=28.16 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=26.3
Q ss_pred hcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 010642 282 RAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQ 334 (505)
Q Consensus 282 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 334 (505)
+.++.+.|.+++.+. ...| ....|-.+...--+.|+++.|.+.+++..+++|+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 444555555555544 3333 2344544544445555555555555555555443
No 457
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.54 E-value=6e+02 Score=26.21 Aligned_cols=54 Identities=11% Similarity=0.073 Sum_probs=27.1
Q ss_pred HHHHhcCChHHHHHHHHHC-CCCC--CHHHHHHHHHHHH-hcCchhHHHHHHHHHHHh
Q 010642 278 DLLGRAGLLDQAYQLITSM-GVKP--DSTIWRTLLGACR-IHKHVTLGERVIEHLIEL 331 (505)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~ 331 (505)
..+.+.|.+..|.++-+-+ .+.| |+.....+|..|+ +..+++--+++++.....
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 3345556666666655544 3333 3444444554443 345555555555555433
No 458
>PRK13342 recombination factor protein RarA; Reviewed
Probab=31.37 E-value=5.2e+02 Score=25.48 Aligned_cols=22 Identities=23% Similarity=0.092 Sum_probs=12.1
Q ss_pred CChHHHHHHHHHHHHCCCCCCH
Q 010642 213 GHGRDAIESFGAMQRAGVFPDD 234 (505)
Q Consensus 213 g~~~~A~~~~~~m~~~g~~p~~ 234 (505)
++.+.|+..+..|.+.|..|..
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~ 265 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLF 265 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 4555555555555555555443
No 459
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=31.08 E-value=4.5e+02 Score=24.66 Aligned_cols=43 Identities=12% Similarity=0.107 Sum_probs=21.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 010642 220 ESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 220 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (505)
++|+.|...++.|.-+.|..+.-.+++.=.+...+.+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 3444444455555555544444444444444555555555543
No 460
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=30.92 E-value=7.8e+02 Score=27.39 Aligned_cols=248 Identities=12% Similarity=0.030 Sum_probs=120.1
Q ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHH
Q 010642 62 QLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQ 141 (505)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~ 141 (505)
.+|+.+...-+..+.+.+..+....+...+..+|...-...+.++.+.+........+..+.. . +|...-...+.
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~--~---~d~~VR~~A~~ 706 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLG--S---PDPVVRAAALD 706 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhc--C---CCHHHHHHHHH
Confidence 456666666666666666544334444444445555544555555444322112223333322 1 45555555555
Q ss_pred HHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHH-HHH
Q 010642 142 ACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRD-AIE 220 (505)
Q Consensus 142 ~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~-A~~ 220 (505)
++...+..+ .. .+..+.+ .+|..+-...+.++.+.+..+. +......++...-...+.++...+..+. +..
T Consensus 707 aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~ 778 (897)
T PRK13800 707 VLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGGAPAGD 778 (897)
T ss_pred HHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccccchhHH
Confidence 555443211 11 2222222 4556666666666666554332 3333445566666666666666655432 334
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCC
Q 010642 221 SFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKP 300 (505)
Q Consensus 221 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 300 (505)
.+..+.. .+|...-...+.++.+.|..+.+...+..+.++ ++..+=...+.++.+.+.. ++...+..+--.|
T Consensus 779 ~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d----~d~~VR~~Aa~aL~~l~~~-~a~~~L~~~L~D~ 850 (897)
T PRK13800 779 AVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA----SAWQVRQGAARALAGAAAD-VAVPALVEALTDP 850 (897)
T ss_pred HHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC----CChHHHHHHHHHHHhcccc-chHHHHHHHhcCC
Confidence 4444443 245555566667777777655444444444432 3444444556666666543 3334433332245
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 010642 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIE 330 (505)
Q Consensus 301 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 330 (505)
+..+-...+.++...+....+...+..+.+
T Consensus 851 ~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 851 HLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred CHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 555555555555554323344445544443
No 461
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=30.21 E-value=2.8e+02 Score=22.02 Aligned_cols=54 Identities=17% Similarity=0.037 Sum_probs=24.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCchhHHHHH
Q 010642 271 HHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWR-TLLGACRIHKHVTLGERV 324 (505)
Q Consensus 271 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-~ll~~~~~~g~~~~a~~~ 324 (505)
.+-.++..++.-.|..++|.++++..+--++-...| -++..|....+.++..++
T Consensus 67 scvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~ 121 (127)
T PF04034_consen 67 SCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEI 121 (127)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 344445555555566666665555553222222222 244444444444443333
No 462
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=29.93 E-value=1.6e+02 Score=22.53 Aligned_cols=22 Identities=14% Similarity=0.273 Sum_probs=11.5
Q ss_pred HHHHHHHHCCChhHHHHHHHHc
Q 010642 101 VLISCYIRNQRTRDALCLFDNL 122 (505)
Q Consensus 101 ~li~~~~~~g~~~~A~~~~~~m 122 (505)
.++..|...++.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444555556666666655554
No 463
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=29.89 E-value=56 Score=23.37 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=18.7
Q ss_pred chHHHHHHHHHHHHHHHHcCcccccccc
Q 010642 394 RINEIYQMLDEINKQLKIAGYVAEITSE 421 (505)
Q Consensus 394 ~~~~~~~~l~~l~~~m~~~g~~p~~~~~ 421 (505)
...++++.+++-..+++..|+.||...+
T Consensus 6 ~li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 6 DLIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 4456777888888889999999998765
No 464
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=29.82 E-value=1.6e+02 Score=26.60 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=9.4
Q ss_pred HHHHHhcCChHHHHHHHHHC
Q 010642 277 VDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~~ 296 (505)
..-|.+.|++++|.++|+.+
T Consensus 185 A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 185 AEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 33444444555554444444
No 465
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=29.66 E-value=4.2e+02 Score=25.99 Aligned_cols=60 Identities=17% Similarity=0.155 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHc--CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 010642 135 TCLLVLQACAHLGALEFGEKIHRYISEH--GYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGM 194 (505)
Q Consensus 135 t~~~ll~~~~~~~~~~~a~~i~~~~~~~--~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 194 (505)
++.-|++...-.|+.....++.+.+.+. |-.|.-.+-.-+.-+|.-.|++.+|.+.|-.+
T Consensus 237 sL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~ni 298 (525)
T KOG3677|consen 237 SLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNI 298 (525)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHH
Confidence 3445666666777766666666666553 22332222244666777788888888887654
No 466
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.35 E-value=7.9e+02 Score=26.93 Aligned_cols=132 Identities=14% Similarity=0.140 Sum_probs=89.5
Q ss_pred HHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010642 177 MYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMF 256 (505)
Q Consensus 177 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 256 (505)
....+|+++.|.+.-.++- +...|..|...-...|+.+-|...|+..+. |..|--.|.-.|+.++-.++
T Consensus 652 LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHH
Confidence 3467899999988877665 566899999999999999999999988764 23333346667888887766
Q ss_pred HHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 257 LDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 257 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
.+....+ -|.. .....-.-.|+.++=.++++..|..|- .|- ....+|.-+.|.++.++.....
T Consensus 721 ~~iae~r----~D~~---~~~qnalYl~dv~ervkIl~n~g~~~l--ayl----ta~~~G~~~~ae~l~ee~~~~~ 783 (1202)
T KOG0292|consen 721 MKIAEIR----NDAT---GQFQNALYLGDVKERVKILENGGQLPL--AYL----TAAAHGLEDQAEKLGEELEKQV 783 (1202)
T ss_pred HHHHHhh----hhhH---HHHHHHHHhccHHHHHHHHHhcCcccH--HHH----HHhhcCcHHHHHHHHHhhcccc
Confidence 6555432 1221 111112236888888889988875542 221 2346788889999988887633
No 467
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=27.71 E-value=4.6e+02 Score=27.48 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=31.1
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCH
Q 010642 138 LVLQACAHLGALEFGEKIHRYISEHG--YGSKMNLCNSLIAMYSKCGSL 184 (505)
Q Consensus 138 ~ll~~~~~~~~~~~a~~i~~~~~~~~--~~~~~~~~~~l~~~y~~~g~~ 184 (505)
+++.+|...|++-.+.++++.....+ -..-...+|..++-..+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 67788888888888888877776543 122234566666666666654
No 468
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=27.22 E-value=1.6e+02 Score=22.62 Aligned_cols=46 Identities=20% Similarity=0.167 Sum_probs=30.2
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 010642 205 MISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLV 250 (505)
Q Consensus 205 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 250 (505)
++..+...+.+-.|.++++.+.+.+..++..|.-..|+.+...|.+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4445555566667777777777776666777666666666666654
No 469
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=27.12 E-value=4.9e+02 Score=23.76 Aligned_cols=27 Identities=22% Similarity=0.149 Sum_probs=12.8
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHhc
Q 010642 64 DSQLMTTLMDLYSTFEKSFEACKLFDE 90 (505)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~A~~~~~~ 90 (505)
|+.....+...|.+.|++.+|+..|-.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 344445555555555555555555433
No 470
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=26.90 E-value=5e+02 Score=23.84 Aligned_cols=46 Identities=13% Similarity=0.047 Sum_probs=22.0
Q ss_pred CCHHHHHHHHhcCCCC-ChhHHHHHHHHHHH----CCChhHHHHHHHHchh
Q 010642 79 EKSFEACKLFDEIPQR-DTVAWNVLISCYIR----NQRTRDALCLFDNLNR 124 (505)
Q Consensus 79 g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 124 (505)
.+...|...|....+. .......|...|.. ..+..+|...|++...
T Consensus 91 ~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~ 141 (292)
T COG0790 91 RDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAK 141 (292)
T ss_pred ccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHH
Confidence 3455566666544433 22333334444433 2355556666655555
No 471
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=26.81 E-value=1.8e+02 Score=25.44 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=57.8
Q ss_pred ChhHHHHHHHHchhccCCCC--C-----CHHHHHHHHHHHHhcc---------ChHHHHHHHHHHHHcCCCC-chhHHHH
Q 010642 111 RTRDALCLFDNLNREESGCK--P-----DDVTCLLVLQACAHLG---------ALEFGEKIHRYISEHGYGS-KMNLCNS 173 (505)
Q Consensus 111 ~~~~A~~~~~~m~~~~~~~~--p-----d~~t~~~ll~~~~~~~---------~~~~a~~i~~~~~~~~~~~-~~~~~~~ 173 (505)
..+.|+.++..|-. ..++ | ...-|..+..+|++.| +.+...++++..++.|++. =+++|++
T Consensus 136 ~vetAiaml~dmG~--~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYss 213 (236)
T TIGR03581 136 PIETAIAMLKDMGG--SSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSS 213 (236)
T ss_pred eHHHHHHHHHHcCC--CeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeecccccee
Confidence 35778888888854 3322 1 3456778888888876 5667778888888888654 3577888
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC
Q 010642 174 LIAMYSKCGSLGMAFEVFKGMP 195 (505)
Q Consensus 174 l~~~y~~~g~~~~A~~~~~~m~ 195 (505)
+|+--.-.-+.++..++|..++
T Consensus 214 iIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 214 IIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccccccCCCCHHHHHHHHHHhh
Confidence 8876666667788777776553
No 472
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=26.75 E-value=2.6e+02 Score=20.49 Aligned_cols=62 Identities=6% Similarity=0.148 Sum_probs=40.3
Q ss_pred ChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCC
Q 010642 29 NPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIP 92 (505)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 92 (505)
+...|...++.-..... +=.++|+.....|+..|+.++..+++...-.=-.+...++++.|-
T Consensus 9 ~~~~~k~~~~rk~~Ls~--eE~EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 9 TAQVYKYSLRRKKVLSA--EEVELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred hHHHHHHHHHHHhccCH--HHHHHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34455555543322221 223788888888999999999998887766656666666666654
No 473
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.67 E-value=2.7e+02 Score=21.06 Aligned_cols=40 Identities=28% Similarity=0.181 Sum_probs=24.3
Q ss_pred HHHHHHHHHhc-CCCCchHHHHHHHHHhCCCHHHHHHHHHH
Q 010642 322 ERVIEHLIELK-AQESGDYVLLLNLYSSVGDWEKVKELREF 361 (505)
Q Consensus 322 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 361 (505)
++.++++...+ +..+.....|.-.|++.|+-+.|.+-|+.
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 34444444433 44445566677777777777777776664
No 474
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=26.35 E-value=1.3e+02 Score=27.87 Aligned_cols=57 Identities=14% Similarity=0.253 Sum_probs=26.1
Q ss_pred HhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCc
Q 010642 281 GRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESG 337 (505)
Q Consensus 281 ~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 337 (505)
.+.|+.++|..+|+.. .+.|+ +....-+....-.+++.-+|.+.+-+++...|.+..
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 3455666666666554 33332 222222222223334455555555555555555443
No 475
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=26.29 E-value=5.8e+02 Score=24.37 Aligned_cols=137 Identities=10% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChH
Q 010642 71 LMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALE 150 (505)
Q Consensus 71 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~ 150 (505)
+.+.+++.++.+.+..+-+.++.-......+|..++-...-.+...+.+.+... .. ||......++++.+......
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~--~~--~d~~~~~a~lRAls~~~~~~ 247 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLE--QA--PDLELLSALLRALSSAPASD 247 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHH--cC--CCHHHHHHHHHHHcCCCchh
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHH-HHHHHhcCCHHHHHHHHhcCCCCC-hhHHHHHHHHHHh
Q 010642 151 FGEKIHRYISEHGYGSKMNLCNSL-IAMYSKCGSLGMAFEVFKGMPEKD-VVSWSAMISGLAM 211 (505)
Q Consensus 151 ~a~~i~~~~~~~~~~~~~~~~~~l-~~~y~~~g~~~~A~~~~~~m~~~~-~~~~~~li~~~~~ 211 (505)
.....+..+.+.....+..+..++ .+...-..+.+.+..+++++-..+ -..||.+..-++.
T Consensus 248 ~~~~~i~~~L~~~~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~~~~~~lF~qlfaDLv~ 310 (340)
T PF12069_consen 248 LVAILIDALLQSPRLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQQDDQALFNQLFADLVM 310 (340)
T ss_pred HHHHHHHHHhcCcccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHcccHHHHHHHHHHHHHh
No 476
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=26.26 E-value=2.1e+02 Score=19.65 Aligned_cols=49 Identities=10% Similarity=-0.030 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 010642 130 KPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYS 179 (505)
Q Consensus 130 ~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~ 179 (505)
.|....++.++..+++-...+.+...+.++.+.|. .+..+|.--+..++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 34455556666666666666666666666666652 33444444343333
No 477
>PRK09857 putative transposase; Provisional
Probab=25.81 E-value=5.5e+02 Score=23.94 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=43.6
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 010642 307 TLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQT 369 (505)
Q Consensus 307 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 369 (505)
.++.-....++.++-.++++.+.+..|.......+++.-+...|.-+++.++..+|...|+..
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 344333455666666777776666655555556677777777787788889999999988864
No 478
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=25.40 E-value=9.8e+02 Score=26.72 Aligned_cols=146 Identities=11% Similarity=0.053 Sum_probs=70.9
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhc---CCcCCc--------chHHHHHHHHH
Q 010642 213 GHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDF---GILPNI--------HHYGCVVDLLG 281 (505)
Q Consensus 213 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~--------~~~~~li~~~~ 281 (505)
|..---.++|+...+ .+|..+...+.-..+..|.++-+.+..+.+.+.+ ..+.+. ..|-.=+.++.
T Consensus 670 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (932)
T PRK13184 670 GFTPFLPELFQRAWD---LRDYRALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALS 746 (932)
T ss_pred cCchhhHHHHHHHhh---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHH
Confidence 333334445555443 2344555555555667777776666665555321 111111 11222234455
Q ss_pred hcCChHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCC---chHHHHHHHHHhCCCHHHHH
Q 010642 282 RAGLLDQAYQLITSMGVKPDS--TIWRTLLGACRIHKHVTLGERVIEHLIELKAQES---GDYVLLLNLYSSVGDWEKVK 356 (505)
Q Consensus 282 ~~g~~~~A~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~ 356 (505)
....++++.+.+... .|.. ..+..+..-+..+++.+.-..+.+.+..-..+.. .....-+.+|.-..+|++|-
T Consensus 747 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (932)
T PRK13184 747 NKEDYEKAFKHLDNT--DPTLILYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAY 824 (932)
T ss_pred ccccHHHHHhhhhhC--CHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHH
Confidence 555666666655554 2322 2333344444455555555555444444332221 12334566777777888887
Q ss_pred HHHHHHH
Q 010642 357 ELREFMN 363 (505)
Q Consensus 357 ~~~~~m~ 363 (505)
++++...
T Consensus 825 ~~~~~~~ 831 (932)
T PRK13184 825 KLLNRYP 831 (932)
T ss_pred HHHHhCC
Confidence 7775543
No 479
>PF13934 ELYS: Nuclear pore complex assembly
Probab=25.33 E-value=4.9e+02 Score=23.16 Aligned_cols=104 Identities=17% Similarity=0.193 Sum_probs=50.2
Q ss_pred HHHHHHHHH--hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHH
Q 010642 202 WSAMISGLA--MNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDL 279 (505)
Q Consensus 202 ~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 279 (505)
|...+.||. .++++++|++.+..- .+.|+-. ..++.++...|+.+.|..+++.+.. ...+......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH
Confidence 344444443 345566666655221 1222221 1355666666777777777766532 11112222222333
Q ss_pred HHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010642 280 LGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRI 314 (505)
Q Consensus 280 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~ 314 (505)
..++.+.+|..+-+...-.-....|..++..+..
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLE 184 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHH
Confidence 4556777777776665211113355555555543
No 480
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=25.10 E-value=1.6e+02 Score=20.24 Aligned_cols=50 Identities=2% Similarity=0.021 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhC
Q 010642 300 PDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSV 349 (505)
Q Consensus 300 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 349 (505)
|....++.++...+...-.+.++..+.++.+.+.-+..+|.--++.+++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 45556667777777777777777777777777655556666655555553
No 481
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=25.10 E-value=8.2e+02 Score=25.69 Aligned_cols=179 Identities=11% Similarity=0.034 Sum_probs=92.6
Q ss_pred HHHHHHHHHHh-CCCCCCh--hhHHHHHHHHH-ccCCcHHHHHHHHHHHHhCCCCChh-----HHHHHHHHHHhCCCHHH
Q 010642 13 EGFYLFEKMRQ-KRIPTNP--FACSFAIKCCM-KFCSLMGGLQIHARVLRDGYQLDSQ-----LMTTLMDLYSTFEKSFE 83 (505)
Q Consensus 13 ~A~~~~~~m~~-~g~~p~~--~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~ 83 (505)
.|+..++-..+ ..++|.. .+.-.+...+. ...+++.|+..+++.+...-.++.. ....++..|.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 45666666663 2333332 23444445444 5678888888888775543222211 2234556666666555
Q ss_pred HHHHHhcCCCC----ChhHH----HHH-HHHHHHCCChhHHHHHHHHchhccCC--CCCCHHHHHHHHHHHH--hccChH
Q 010642 84 ACKLFDEIPQR----DTVAW----NVL-ISCYIRNQRTRDALCLFDNLNREESG--CKPDDVTCLLVLQACA--HLGALE 150 (505)
Q Consensus 84 A~~~~~~~~~~----~~~~~----~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~--~~pd~~t~~~ll~~~~--~~~~~~ 150 (505)
|.+..++..+. ....| .-+ +..+...+++..|++.++.+... .. ..|-...+..++.+.. ..+..+
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~-a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQL-ANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-hhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 77777665431 11122 222 22233337888888888887652 22 2233344444555443 344455
Q ss_pred HHHHHHHHHHHcC---------CCCchhHHHHHHHHH--HhcCCHHHHHHHHhc
Q 010642 151 FGEKIHRYISEHG---------YGSKMNLCNSLIAMY--SKCGSLGMAFEVFKG 193 (505)
Q Consensus 151 ~a~~i~~~~~~~~---------~~~~~~~~~~l~~~y--~~~g~~~~A~~~~~~ 193 (505)
.+.+..+.+.... .+|...++..+++.+ ...|+++.+...+++
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~ 250 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQ 250 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5666665553321 133455666666544 456666666555443
No 482
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=24.62 E-value=6.2e+02 Score=24.17 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=18.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHH
Q 010642 341 LLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 341 ~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
-|+..|...+++.+|..+...+.
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~ 155 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLL 155 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 57888999999999888776653
No 483
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=24.26 E-value=4.5e+02 Score=23.66 Aligned_cols=76 Identities=13% Similarity=0.022 Sum_probs=49.4
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCC------CCchHHHHHHHHHhCCCHHHHHHHHH
Q 010642 288 QAYQLITSMGVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQ------ESGDYVLLLNLYSSVGDWEKVKELRE 360 (505)
Q Consensus 288 ~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~ 360 (505)
.|.+.|...+..- -...-..+..-|...|+++.|.++|+.+...... ...+...|..++.+.|+.++...+-=
T Consensus 163 ~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 163 KAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4556665553211 1222334557788999999999999998654321 22345567788888999988887755
Q ss_pred HHH
Q 010642 361 FMN 363 (505)
Q Consensus 361 ~m~ 363 (505)
+|.
T Consensus 243 eLl 245 (247)
T PF11817_consen 243 ELL 245 (247)
T ss_pred HHh
Confidence 543
No 484
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=24.19 E-value=3.2e+02 Score=20.75 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=13.8
Q ss_pred HHHHHHHHCCChhHHHHHHHHch
Q 010642 101 VLISCYIRNQRTRDALCLFDNLN 123 (505)
Q Consensus 101 ~li~~~~~~g~~~~A~~~~~~m~ 123 (505)
.++.-|...+++++|..-+.++.
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhC
Confidence 34555666666666666666653
No 485
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=23.89 E-value=2.7e+02 Score=24.95 Aligned_cols=161 Identities=9% Similarity=0.010 Sum_probs=0.0
Q ss_pred CcccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc-CCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC-
Q 010642 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKF-CSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTF- 78 (505)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 78 (505)
|+..+-+.|++++++..++++...+...+..--+.+..+|-.. |....+++++..+....-.........++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki 86 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKI 86 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHH
Q ss_pred -----CCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCCh-----------------hHHHHHHHHchhccCC-CCCCHHH
Q 010642 79 -----EKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRT-----------------RDALCLFDNLNREESG-CKPDDVT 135 (505)
Q Consensus 79 -----g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~-----------------~~A~~~~~~m~~~~~~-~~pd~~t 135 (505)
.--.+..++.+...-|....--+.+--+--.|++ +.|.+.|++....-.. ++|...+
T Consensus 87 e~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~ 166 (236)
T PF00244_consen 87 EDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPL 166 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcH
Q ss_pred HHHHHHHHHhc-----cChHHHHHHHHHHHH
Q 010642 136 CLLVLQACAHL-----GALEFGEKIHRYISE 161 (505)
Q Consensus 136 ~~~ll~~~~~~-----~~~~~a~~i~~~~~~ 161 (505)
+..++--++-. |+.++|.++-..+..
T Consensus 167 rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 167 RLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
No 486
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.68 E-value=7.1e+02 Score=24.47 Aligned_cols=64 Identities=14% Similarity=0.072 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHH
Q 010642 98 AWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISE 161 (505)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 161 (505)
.+.-+..-|...|+.+.|++.|.+.+.-=...+-....|..++....-.++|.....+-.++..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4566677777788888888887775330000011122334444444555666555555444443
No 487
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=23.51 E-value=1.6e+02 Score=29.14 Aligned_cols=100 Identities=11% Similarity=0.063 Sum_probs=50.8
Q ss_pred HHHHhcCCHHHHHHHHhcCCC--CCh-hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHH
Q 010642 176 AMYSKCGSLGMAFEVFKGMPE--KDV-VSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDD-QTFTGVLSACSHCGLVD 251 (505)
Q Consensus 176 ~~y~~~g~~~~A~~~~~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~ 251 (505)
+-+.+.+.++.|..++.+..+ ||- .-|..-..++.+.+++..|+.=+....+.. |+. ..|..=..+|...+.+.
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHHH
Confidence 344556666666666666543 322 233333356666666666666555554432 322 22333334455555556
Q ss_pred HHHHHHHHHhhhcCCcCCcchHHHHHHHH
Q 010642 252 EGMMFLDRMSKDFGILPNIHHYGCVVDLL 280 (505)
Q Consensus 252 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 280 (505)
+|...|+... .+.|+..-...+++-+
T Consensus 90 ~A~~~l~~~~---~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 90 KALLDLEKVK---KLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHhh---hcCcCcHHHHHHHHHH
Confidence 6666555554 3455555555554443
No 488
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=23.48 E-value=98 Score=23.86 Aligned_cols=37 Identities=8% Similarity=-0.001 Sum_probs=18.0
Q ss_pred CCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 010642 9 SSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCS 45 (505)
Q Consensus 9 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 45 (505)
+..-.|-++++.+.+.+..++..|....|+.+...|-
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 3444555555555555444444444444444444443
No 489
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=23.41 E-value=1.7e+02 Score=17.19 Aligned_cols=17 Identities=6% Similarity=-0.218 Sum_probs=8.0
Q ss_pred HHHHHHhcCchhHHHHH
Q 010642 308 LLGACRIHKHVTLGERV 324 (505)
Q Consensus 308 ll~~~~~~g~~~~a~~~ 324 (505)
+...+-..|++++|+.+
T Consensus 7 ~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 33444455555555555
No 490
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=23.26 E-value=5.4e+02 Score=26.12 Aligned_cols=60 Identities=15% Similarity=0.275 Sum_probs=41.0
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHh
Q 010642 269 NIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIEL 331 (505)
Q Consensus 269 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 331 (505)
++..|-.++.-|...+++++|.++-+-.+ +...|.+|......+.+...++..+..+.+.
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~i 631 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQI 631 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhch
Confidence 44556677777888888888888877653 4566777777666777766666666555443
No 491
>PF14044 NETI: NETI protein
Probab=23.21 E-value=74 Score=20.96 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=12.3
Q ss_pred HHHHHHHHHcCccccc
Q 010642 403 DEINKQLKIAGYVAEI 418 (505)
Q Consensus 403 ~~l~~~m~~~g~~p~~ 418 (505)
.+-+.+|++.||.|-.
T Consensus 11 ~~CL~RM~~eGY~Pvr 26 (57)
T PF14044_consen 11 SDCLARMKKEGYMPVR 26 (57)
T ss_pred HHHHHHHHHcCCCcee
Confidence 4466788999999854
No 492
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=23.18 E-value=5.2e+02 Score=22.75 Aligned_cols=26 Identities=12% Similarity=-0.028 Sum_probs=18.6
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHchh
Q 010642 99 WNVLISCYIRNQRTRDALCLFDNLNR 124 (505)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~ 124 (505)
.-.+.....+.|+.++|.+.|.++..
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 33455566777888888888888766
No 493
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=22.55 E-value=1.1e+03 Score=26.35 Aligned_cols=120 Identities=11% Similarity=0.158 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHH
Q 010642 213 GHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCG--LVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAY 290 (505)
Q Consensus 213 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 290 (505)
++.....+.+.+..+. ..-...-+..+|.+|.+.+ ++++|++...++.+. +...|.
T Consensus 792 ~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~---------------------~~~~ae 849 (928)
T PF04762_consen 792 SKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE---------------------DPESAE 849 (928)
T ss_pred cHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc---------------------ChHHHH
Q ss_pred HHHHHC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhC-------------CCHHHHH
Q 010642 291 QLITSM-GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSV-------------GDWEKVK 356 (505)
Q Consensus 291 ~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------g~~~~a~ 356 (505)
+.++-+ =+.+-...|+.-+..| |++.|..+.++..+ +|.-|.-.++-+.+. |++++|+
T Consensus 850 ~alkyl~fLvDvn~Ly~~ALG~Y----Dl~Lal~VAq~SQk----DPKEYLPfL~~L~~l~~~~rry~ID~hLkRy~kAL 921 (928)
T PF04762_consen 850 EALKYLCFLVDVNKLYDVALGTY----DLELALMVAQQSQK----DPKEYLPFLQELQKLPPLYRRYKIDDHLKRYEKAL 921 (928)
T ss_pred HHHhHheeeccHHHHHHHHhhhc----CHHHHHHHHHHhcc----ChHHHHHHHHHHHhCChhheeeeHhhhhCCHHHHH
Q ss_pred HHHHHH
Q 010642 357 ELREFM 362 (505)
Q Consensus 357 ~~~~~m 362 (505)
+-+.++
T Consensus 922 ~~L~~~ 927 (928)
T PF04762_consen 922 RHLSAC 927 (928)
T ss_pred HHHHhh
No 494
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=22.46 E-value=60 Score=22.09 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=16.7
Q ss_pred CCChhHHHHHHHHchhccCCCCCCHH
Q 010642 109 NQRTRDALCLFDNLNREESGCKPDDV 134 (505)
Q Consensus 109 ~g~~~~A~~~~~~m~~~~~~~~pd~~ 134 (505)
.-+++.|+..|.++... ..++|+.+
T Consensus 38 ~Wd~~~Al~~F~~lk~~-~~IP~eAF 62 (63)
T smart00804 38 NWDYERALKNFTELKSE-GSIPPEAF 62 (63)
T ss_pred CCCHHHHHHHHHHHHhc-CCCChhhc
Confidence 55778888888887752 34565543
No 495
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=22.45 E-value=3.5e+02 Score=22.71 Aligned_cols=57 Identities=9% Similarity=-0.037 Sum_probs=27.0
Q ss_pred CCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 010642 127 SGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSL 184 (505)
Q Consensus 127 ~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~ 184 (505)
.|++++..-. .++..+......-.|.++++.+.+.+...+..|..--++.+.+.|-+
T Consensus 20 ~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 20 RNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred cCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3444443322 23333333344445666666666655444444444445555555543
No 496
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=22.32 E-value=6.4e+02 Score=23.45 Aligned_cols=67 Identities=7% Similarity=0.016 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC
Q 010642 230 VFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 230 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 296 (505)
..++..+...++..++..+++..-.++++......+...|...|..+|......|+..-..+++++-
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 4455555555666666666666666666555542223335555666666666666665555555543
No 497
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=22.29 E-value=1.5e+02 Score=22.97 Aligned_cols=47 Identities=19% Similarity=0.147 Sum_probs=31.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 010642 203 SAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGL 249 (505)
Q Consensus 203 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 249 (505)
..++..+...+.+-.|.++++.+.+.+...+..|.-.-|..+.+.|-
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 34556666666677888888888887777777766666666665554
No 498
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=22.16 E-value=4e+02 Score=21.07 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=8.4
Q ss_pred HHHHHHHHHhcCChHHH
Q 010642 273 YGCVVDLLGRAGLLDQA 289 (505)
Q Consensus 273 ~~~li~~~~~~g~~~~A 289 (505)
+..|..++...|+++++
T Consensus 58 hA~Ls~A~~~Lgry~e~ 74 (144)
T PF12968_consen 58 HAGLSGALAGLGRYDEC 74 (144)
T ss_dssp HHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHhhccHHHH
Confidence 34455555555655544
No 499
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=22.05 E-value=6.8e+02 Score=23.66 Aligned_cols=145 Identities=12% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHccCC------------cHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHH
Q 010642 18 FEKMRQKRIPTNPFACSFAIKCCMKFCS------------LMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEAC 85 (505)
Q Consensus 18 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 85 (505)
|++..+..+. |..+|-.++..--..-. .+.-+.+++++++.+ +.+......++..+.+..+.+...
T Consensus 8 l~~~v~~~P~-di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 8 LNRRVRENPH-DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHhCcc-cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHH
Q ss_pred HHHhcCCC---CChhHHHHHHHHHHH---CCChhHHHHHHHHchhccCCCCCCH---------------HHHHHHHHHHH
Q 010642 86 KLFDEIPQ---RDTVAWNVLISCYIR---NQRTRDALCLFDNLNREESGCKPDD---------------VTCLLVLQACA 144 (505)
Q Consensus 86 ~~~~~~~~---~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~pd~---------------~t~~~ll~~~~ 144 (505)
+.++++.. .+...|...|..... .-.+.....+|.+..+.-.+..-+. ..|.-+...+.
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~ 165 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR 165 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Q ss_pred hccChHHHHHHHHHHHHcCC
Q 010642 145 HLGALEFGEKIHRYISEHGY 164 (505)
Q Consensus 145 ~~~~~~~a~~i~~~~~~~~~ 164 (505)
+.|..+.|..+++.+.+.++
T Consensus 166 ~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 166 QAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HCCchHHHHHHHHHHHHHHc
No 500
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=21.92 E-value=5.3e+02 Score=22.38 Aligned_cols=59 Identities=10% Similarity=0.152 Sum_probs=37.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhhc-------------CCcCCcchHHHHHHHHHhcCChHHHHHHHHHC
Q 010642 238 TGVLSACSHCGLVDEGMMFLDRMSKDF-------------GILPNIHHYGCVVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~-------------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 296 (505)
.+++..|.+.-++.++.++++.|.+-. +..+.-...|.-...+.+.|.+|.|+.++++-
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 345666777778888888887776520 11223334556666677777777777777654
Done!