Query 010642
Match_columns 505
No_of_seqs 664 out of 3501
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 11:10:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010642.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010642hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.8E-33 1.6E-37 287.5 37.5 357 2-365 91-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.1E-32 3.8E-37 284.7 25.5 391 8-418 66-514 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.6E-29 5.4E-34 251.9 21.5 182 98-282 28-222 (501)
4 1w3b_A UDP-N-acetylglucosamine 100.0 6.9E-27 2.4E-31 228.0 37.0 351 4-365 8-368 (388)
5 4g26_A Pentatricopeptide repea 100.0 2.6E-29 8.9E-34 250.4 18.5 212 12-247 7-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 3E-25 1E-29 216.4 34.7 339 4-351 42-388 (388)
7 2gw1_A Mitochondrial precursor 99.9 1.8E-23 6.2E-28 211.3 32.1 355 4-366 15-479 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 6.1E-23 2.1E-27 204.0 31.8 323 11-345 8-372 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 2.4E-22 8.3E-27 199.7 31.1 342 3-354 34-443 (450)
10 3fp2_A TPR repeat-containing p 99.9 4.8E-21 1.6E-25 194.8 33.6 352 4-366 34-492 (537)
11 2gw1_A Mitochondrial precursor 99.9 3.7E-20 1.3E-24 187.0 29.6 361 30-406 6-476 (514)
12 3ieg_A DNAJ homolog subfamily 99.9 3.4E-19 1.1E-23 170.9 32.1 312 29-348 2-352 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 6.6E-19 2.2E-23 168.9 30.8 296 64-366 2-336 (359)
14 3hym_B Cell division cycle pro 99.8 1.4E-18 4.7E-23 164.7 26.6 281 29-346 21-314 (330)
15 3hym_B Cell division cycle pro 99.8 6.3E-18 2.2E-22 160.1 29.7 277 4-312 31-314 (330)
16 3fp2_A TPR repeat-containing p 99.8 1.6E-18 5.6E-23 176.0 24.8 325 30-366 25-408 (537)
17 1fch_A Peroxisomal targeting s 99.8 2.4E-18 8.2E-23 165.9 22.4 279 76-360 36-354 (368)
18 4eqf_A PEX5-related protein; a 99.8 3.5E-18 1.2E-22 164.8 20.4 261 95-361 64-352 (365)
19 1fch_A Peroxisomal targeting s 99.8 1.4E-17 4.8E-22 160.5 22.3 278 44-329 39-357 (368)
20 2xm6_A Protein corresponding t 99.8 2.6E-15 9E-20 150.7 38.6 337 8-367 56-434 (490)
21 3mkr_A Coatomer subunit epsilo 99.8 4.5E-16 1.5E-20 144.7 29.2 268 75-358 9-287 (291)
22 1b89_A Protein (clathrin heavy 99.8 1.4E-18 4.6E-23 165.6 11.3 281 42-358 15-304 (449)
23 4eqf_A PEX5-related protein; a 99.8 7.7E-17 2.6E-21 155.3 23.9 224 31-262 66-309 (365)
24 1b89_A Protein (clathrin heavy 99.8 1.8E-16 6.1E-21 151.1 25.3 277 8-323 16-303 (449)
25 3cv0_A Peroxisome targeting si 99.8 6.1E-17 2.1E-21 153.1 22.3 259 97-362 22-312 (327)
26 2xm6_A Protein corresponding t 99.7 4E-14 1.4E-18 142.1 38.8 365 13-407 25-431 (490)
27 4g1t_A Interferon-induced prot 99.7 1.8E-15 6.2E-20 151.0 28.6 331 29-368 50-462 (472)
28 3cv0_A Peroxisome targeting si 99.7 3.9E-16 1.3E-20 147.5 22.3 260 29-295 20-311 (327)
29 3mkr_A Coatomer subunit epsilo 99.7 6.1E-16 2.1E-20 143.7 22.6 247 103-366 6-265 (291)
30 2ooe_A Cleavage stimulation fa 99.7 2.7E-14 9.3E-19 144.8 34.2 390 5-407 22-494 (530)
31 3spa_A Mtrpol, DNA-directed RN 99.7 1.1E-17 3.7E-22 171.8 7.9 115 168-283 127-249 (1134)
32 2ooe_A Cleavage stimulation fa 99.7 7.3E-14 2.5E-18 141.6 35.2 341 18-365 2-420 (530)
33 3spa_A Mtrpol, DNA-directed RN 99.7 4.6E-17 1.6E-21 167.2 8.9 148 64-213 126-286 (1134)
34 3uq3_A Heat shock protein STI1 99.7 1.2E-14 4.2E-19 132.1 21.4 225 97-365 6-236 (258)
35 1xi4_A Clathrin heavy chain; a 99.7 2.6E-13 8.9E-18 143.9 33.9 318 2-360 992-1340(1630)
36 1xi4_A Clathrin heavy chain; a 99.6 2.7E-13 9.1E-18 143.8 31.8 310 4-357 1058-1376(1630)
37 3uq3_A Heat shock protein STI1 99.6 9.4E-15 3.2E-19 132.8 18.3 223 64-332 4-237 (258)
38 4g1t_A Interferon-induced prot 99.6 3.9E-14 1.3E-18 141.3 23.3 332 4-342 60-470 (472)
39 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.6E-14 8.9E-19 131.4 20.2 241 108-359 17-269 (275)
40 2pl2_A Hypothetical conserved 99.6 1.9E-14 6.6E-19 127.6 17.8 195 165-363 2-212 (217)
41 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.5E-14 1.5E-18 129.8 20.4 243 4-257 14-269 (275)
42 3u4t_A TPR repeat-containing p 99.6 6.9E-14 2.4E-18 128.4 18.9 247 68-346 6-265 (272)
43 2pl2_A Hypothetical conserved 99.6 1.2E-13 4E-18 122.5 18.9 193 95-295 4-210 (217)
44 2ho1_A Type 4 fimbrial biogene 99.6 5E-13 1.7E-17 121.2 22.6 205 96-337 37-244 (252)
45 2vq2_A PILW, putative fimbrial 99.6 8.9E-13 3.1E-17 116.9 22.9 196 138-336 13-216 (225)
46 2h6f_A Protein farnesyltransfe 99.6 4.1E-13 1.4E-17 129.1 21.5 246 95-348 96-365 (382)
47 3u4t_A TPR repeat-containing p 99.5 1E-12 3.5E-17 120.5 22.9 228 30-263 3-250 (272)
48 2ho1_A Type 4 fimbrial biogene 99.5 9.9E-13 3.4E-17 119.2 22.5 195 65-263 37-238 (252)
49 2q7f_A YRRB protein; TPR, prot 99.5 1.5E-13 5.1E-18 123.8 16.8 205 136-344 26-235 (243)
50 2vq2_A PILW, putative fimbrial 99.5 1.2E-12 4.2E-17 116.0 22.1 199 165-365 5-211 (225)
51 1ouv_A Conserved hypothetical 99.5 4.7E-12 1.6E-16 116.4 26.6 224 95-334 5-254 (273)
52 4a1s_A PINS, partner of inscut 99.5 1.6E-13 5.6E-18 134.1 16.5 261 101-365 53-372 (411)
53 1ouv_A Conserved hypothetical 99.5 5.8E-12 2E-16 115.7 25.9 223 132-367 5-253 (273)
54 3sf4_A G-protein-signaling mod 99.5 3.4E-13 1.2E-17 131.3 18.5 265 96-364 9-335 (406)
55 2h6f_A Protein farnesyltransfe 99.5 6.5E-13 2.2E-17 127.7 19.7 227 133-364 97-347 (382)
56 3ro2_A PINS homolog, G-protein 99.5 7.6E-13 2.6E-17 124.9 19.7 263 99-365 8-332 (338)
57 3e4b_A ALGK; tetratricopeptide 99.5 6.8E-13 2.3E-17 131.3 19.5 340 5-368 13-390 (452)
58 2q7f_A YRRB protein; TPR, prot 99.5 4.1E-13 1.4E-17 120.8 16.3 198 166-366 21-223 (243)
59 3sf4_A G-protein-signaling mod 99.5 4.7E-13 1.6E-17 130.3 17.7 296 28-353 7-364 (406)
60 3e4b_A ALGK; tetratricopeptide 99.5 1.5E-12 5.1E-17 128.9 20.5 311 36-367 9-353 (452)
61 4a1s_A PINS, partner of inscut 99.5 1.1E-12 3.8E-17 128.2 16.2 270 35-333 53-374 (411)
62 3ro2_A PINS homolog, G-protein 99.5 1.7E-12 5.7E-17 122.6 16.9 268 32-332 7-333 (338)
63 4abn_A Tetratricopeptide repea 99.4 7.5E-13 2.6E-17 131.8 14.6 207 150-361 85-317 (474)
64 3vtx_A MAMA; tetratricopeptide 99.4 1.3E-11 4.4E-16 106.0 20.0 165 198-365 4-170 (184)
65 2ond_A Cleavage stimulation fa 99.4 6.7E-11 2.3E-15 110.7 25.3 218 113-336 33-275 (308)
66 3ulq_A Response regulator aspa 99.4 3.5E-12 1.2E-16 123.5 16.4 163 201-364 186-367 (383)
67 3nf1_A KLC 1, kinesin light ch 99.4 7.1E-13 2.4E-17 124.0 10.2 168 95-262 26-223 (311)
68 2ond_A Cleavage stimulation fa 99.4 1.6E-10 5.3E-15 108.2 25.8 211 47-263 33-270 (308)
69 3ulq_A Response regulator aspa 99.4 1.4E-11 4.9E-16 119.2 17.9 292 40-332 22-369 (383)
70 3nf1_A KLC 1, kinesin light ch 99.4 2.2E-12 7.7E-17 120.5 10.5 248 64-333 26-309 (311)
71 1hz4_A MALT regulatory protein 99.3 1E-09 3.6E-14 105.5 28.6 262 101-364 19-321 (373)
72 3vtx_A MAMA; tetratricopeptide 99.3 6.7E-11 2.3E-15 101.5 17.6 160 64-227 4-169 (184)
73 4abn_A Tetratricopeptide repea 99.3 2.6E-11 8.7E-16 120.8 16.7 211 45-262 83-320 (474)
74 3q15_A PSP28, response regulat 99.3 6.2E-11 2.1E-15 114.5 18.2 162 201-363 184-363 (378)
75 4gyw_A UDP-N-acetylglucosamine 99.3 6.1E-11 2.1E-15 123.0 17.5 159 200-363 10-172 (723)
76 3q15_A PSP28, response regulat 99.3 1.3E-09 4.5E-14 105.1 25.8 303 27-331 7-365 (378)
77 3as5_A MAMA; tetratricopeptide 99.3 1.5E-10 5E-15 99.0 16.9 162 168-364 8-172 (186)
78 1hz4_A MALT regulatory protein 99.3 2.3E-09 7.9E-14 103.1 26.5 256 6-261 25-320 (373)
79 3as5_A MAMA; tetratricopeptide 99.3 5.2E-10 1.8E-14 95.4 19.2 159 133-295 8-169 (186)
80 4i17_A Hypothetical protein; T 99.2 3.9E-10 1.3E-14 100.4 18.2 203 131-345 5-223 (228)
81 4e6h_A MRNA 3'-END-processing 99.2 5E-08 1.7E-12 100.1 33.0 353 11-367 48-535 (679)
82 4i17_A Hypothetical protein; T 99.2 7.5E-10 2.6E-14 98.5 16.2 190 165-365 4-209 (228)
83 4e6h_A MRNA 3'-END-processing 99.2 1.9E-08 6.6E-13 103.1 28.3 214 152-367 328-572 (679)
84 3edt_B KLC 2, kinesin light ch 99.1 3.6E-10 1.2E-14 103.6 13.2 131 132-262 42-197 (283)
85 4gyw_A UDP-N-acetylglucosamine 99.1 1.3E-09 4.5E-14 113.1 18.1 156 65-225 9-171 (723)
86 3edt_B KLC 2, kinesin light ch 99.1 1E-09 3.4E-14 100.7 12.4 223 5-227 11-280 (283)
87 1qqe_A Vesicular transport pro 99.1 3.2E-09 1.1E-13 98.4 15.6 186 74-261 46-267 (292)
88 1qqe_A Vesicular transport pro 99.1 3E-09 1E-13 98.6 15.2 175 96-296 37-225 (292)
89 3qky_A Outer membrane assembly 99.0 2.5E-08 8.6E-13 90.6 20.4 206 165-411 12-247 (261)
90 3mv2_B Coatomer subunit epsilo 99.0 4.5E-08 1.5E-12 89.5 21.3 237 77-337 25-288 (310)
91 3mv2_B Coatomer subunit epsilo 99.0 4.3E-08 1.5E-12 89.6 20.7 240 103-366 20-283 (310)
92 2fo7_A Synthetic consensus TPR 99.0 1.1E-08 3.8E-13 81.8 14.6 123 240-364 7-131 (136)
93 3qky_A Outer membrane assembly 99.0 9.3E-09 3.2E-13 93.5 15.7 186 130-337 12-230 (261)
94 2fo7_A Synthetic consensus TPR 99.0 2.4E-08 8.1E-13 79.9 15.4 131 201-334 3-135 (136)
95 2yhc_A BAMD, UPF0169 lipoprote 99.0 5.5E-08 1.9E-12 86.2 18.8 183 168-368 4-216 (225)
96 2pzi_A Probable serine/threoni 98.9 3E-09 1E-13 110.7 10.7 169 179-351 402-583 (681)
97 2r5s_A Uncharacterized protein 98.9 4.8E-08 1.6E-12 82.9 15.4 155 67-226 8-171 (176)
98 4ga2_A E3 SUMO-protein ligase 98.9 2.4E-09 8.2E-14 88.4 6.0 139 209-351 7-149 (150)
99 2pzi_A Probable serine/threoni 98.9 1.1E-07 3.9E-12 98.8 19.8 188 144-337 402-608 (681)
100 3qou_A Protein YBBN; thioredox 98.8 7.1E-08 2.4E-12 89.0 15.8 172 187-363 105-282 (287)
101 3urz_A Uncharacterized protein 98.8 6.7E-08 2.3E-12 84.5 14.8 22 103-124 11-32 (208)
102 3urz_A Uncharacterized protein 98.8 9.6E-08 3.3E-12 83.5 15.6 180 135-334 6-189 (208)
103 3qou_A Protein YBBN; thioredox 98.8 1.7E-07 5.8E-12 86.4 17.8 160 62-226 114-282 (287)
104 2ifu_A Gamma-SNAP; membrane fu 98.8 1E-07 3.6E-12 88.8 16.1 221 108-358 3-254 (307)
105 3rjv_A Putative SEL1 repeat pr 98.8 4E-07 1.4E-11 79.8 18.2 161 198-367 17-199 (212)
106 2vsy_A XCC0866; transferase, g 98.8 8.2E-08 2.8E-12 97.9 15.8 160 181-343 2-169 (568)
107 2yhc_A BAMD, UPF0169 lipoprote 98.8 3E-07 1E-11 81.3 16.9 58 67-124 6-69 (225)
108 2r5s_A Uncharacterized protein 98.8 1E-07 3.4E-12 80.8 13.1 61 302-362 108-170 (176)
109 3dra_A Protein farnesyltransfe 98.8 1.1E-06 3.9E-11 80.9 20.9 144 112-261 49-213 (306)
110 2vsy_A XCC0866; transferase, g 98.8 1.6E-07 5.5E-12 95.7 16.8 147 146-296 2-154 (568)
111 1hh8_A P67PHOX, NCF-2, neutrop 98.7 7.1E-07 2.4E-11 77.9 18.4 146 170-335 8-154 (213)
112 3rjv_A Putative SEL1 repeat pr 98.7 5E-07 1.7E-11 79.1 17.2 154 13-179 4-173 (212)
113 2ifu_A Gamma-SNAP; membrane fu 98.7 9.6E-08 3.3E-12 89.1 13.2 158 103-261 43-222 (307)
114 4ga2_A E3 SUMO-protein ligase 98.7 1.8E-08 6.1E-13 83.0 7.3 122 240-364 3-128 (150)
115 3dra_A Protein farnesyltransfe 98.7 6E-06 2E-10 76.1 24.6 213 148-364 48-286 (306)
116 3u3w_A Transcriptional activat 98.7 3.5E-06 1.2E-10 77.8 22.5 159 205-363 81-264 (293)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.7 6E-07 2E-11 78.4 15.7 141 69-228 10-150 (213)
118 2uy1_A Cleavage stimulation fa 98.7 6.6E-06 2.3E-10 81.7 24.5 337 9-364 28-412 (493)
119 3gyz_A Chaperone protein IPGC; 98.7 1.3E-07 4.4E-12 77.7 10.1 102 265-366 30-134 (151)
120 2qfc_A PLCR protein; TPR, HTH, 98.6 9.4E-07 3.2E-11 81.7 16.9 163 201-363 77-264 (293)
121 3u3w_A Transcriptional activat 98.6 4.6E-06 1.6E-10 77.0 20.7 160 173-332 80-267 (293)
122 2uy1_A Cleavage stimulation fa 98.6 6.8E-06 2.3E-10 81.7 22.7 323 7-362 6-380 (493)
123 1a17_A Serine/threonine protei 98.6 8.4E-07 2.9E-11 73.8 13.7 126 236-363 15-144 (166)
124 2c2l_A CHIP, carboxy terminus 98.6 1.5E-07 5.2E-12 86.5 9.8 50 315-364 148-198 (281)
125 4gco_A Protein STI-1; structur 98.6 5.9E-07 2E-11 71.3 11.3 106 236-343 15-122 (126)
126 1na0_A Designed protein CTPR3; 98.6 1.1E-06 3.9E-11 68.8 12.9 113 235-349 10-124 (125)
127 2vgx_A Chaperone SYCD; alterna 98.6 2.8E-07 9.6E-12 75.6 9.4 97 269-365 20-118 (148)
128 2qfc_A PLCR protein; TPR, HTH, 98.6 1.4E-06 4.9E-11 80.4 15.3 162 170-331 77-266 (293)
129 4gco_A Protein STI-1; structur 98.5 7.9E-07 2.7E-11 70.6 10.9 100 266-365 8-110 (126)
130 2lni_A Stress-induced-phosphop 98.5 1.1E-06 3.9E-11 69.8 11.8 113 236-350 18-132 (133)
131 2vyi_A SGTA protein; chaperone 98.5 1.1E-06 3.9E-11 69.4 11.8 116 235-352 13-130 (131)
132 4f3v_A ESX-1 secretion system 98.5 3.9E-06 1.3E-10 75.6 15.5 122 101-227 107-236 (282)
133 3gw4_A Uncharacterized protein 98.5 1.6E-06 5.3E-11 74.9 12.0 62 200-261 27-93 (203)
134 1a17_A Serine/threonine protei 98.4 3.9E-06 1.3E-10 69.7 13.9 92 98-193 15-106 (166)
135 3gw4_A Uncharacterized protein 98.4 1E-06 3.6E-11 76.1 10.6 116 78-193 5-132 (203)
136 2c2l_A CHIP, carboxy terminus 98.4 5E-07 1.7E-11 82.9 8.8 90 32-122 6-98 (281)
137 1p5q_A FKBP52, FK506-binding p 98.4 1.5E-06 5.1E-11 82.0 12.3 93 271-363 197-292 (336)
138 2e2e_A Formate-dependent nitri 98.4 7.4E-07 2.5E-11 75.4 9.0 120 245-366 21-145 (177)
139 4f3v_A ESX-1 secretion system 98.4 4.6E-07 1.6E-11 81.7 7.8 131 205-340 108-245 (282)
140 3q7a_A Farnesyltransferase alp 98.4 0.0001 3.4E-09 68.7 23.7 179 99-285 57-257 (349)
141 3gyz_A Chaperone protein IPGC; 98.4 1.3E-06 4.4E-11 71.7 9.8 60 168-227 70-132 (151)
142 2e2e_A Formate-dependent nitri 98.4 1.2E-06 4.2E-11 74.0 9.9 119 4-124 19-143 (177)
143 2xcb_A PCRH, regulatory protei 98.4 2.1E-06 7.2E-11 69.6 10.9 96 270-365 18-115 (142)
144 1na0_A Designed protein CTPR3; 98.4 5.8E-06 2E-10 64.6 12.7 62 98-162 45-106 (125)
145 2kck_A TPR repeat; tetratricop 98.4 3.1E-06 1.1E-10 64.8 10.6 99 269-367 5-108 (112)
146 3upv_A Heat shock protein STI1 98.4 3.4E-06 1.2E-10 66.6 10.8 95 271-365 5-101 (126)
147 2vyi_A SGTA protein; chaperone 98.3 7.9E-06 2.7E-10 64.4 12.5 60 99-161 15-74 (131)
148 2lni_A Stress-induced-phosphop 98.3 5.9E-06 2E-10 65.5 11.8 97 269-365 15-113 (133)
149 2vgx_A Chaperone SYCD; alterna 98.3 3E-06 1E-10 69.4 9.8 94 168-262 21-117 (148)
150 3q7a_A Farnesyltransferase alp 98.3 0.00015 5.2E-09 67.5 22.3 211 47-262 71-330 (349)
151 2fbn_A 70 kDa peptidylprolyl i 98.3 5.6E-06 1.9E-10 71.4 11.9 171 175-366 11-187 (198)
152 3dss_A Geranylgeranyl transfer 98.3 0.00013 4.6E-09 67.5 21.6 228 108-344 41-317 (331)
153 1elw_A TPR1-domain of HOP; HOP 98.3 8.3E-06 2.8E-10 63.0 11.7 101 239-341 9-111 (118)
154 3q49_B STIP1 homology and U bo 98.3 7.8E-06 2.7E-10 65.5 11.8 97 269-365 8-106 (137)
155 1hxi_A PEX5, peroxisome target 98.3 3.8E-06 1.3E-10 66.0 9.6 95 271-365 18-114 (121)
156 1p5q_A FKBP52, FK506-binding p 98.3 5.6E-06 1.9E-10 78.0 12.5 119 95-218 146-283 (336)
157 1elw_A TPR1-domain of HOP; HOP 98.3 9.5E-06 3.2E-10 62.6 11.2 97 270-366 4-102 (118)
158 2dba_A Smooth muscle cell asso 98.2 1.2E-05 4E-10 65.2 12.0 94 271-364 29-127 (148)
159 3sz7_A HSC70 cochaperone (SGT) 98.2 6.8E-06 2.3E-10 68.4 10.7 93 272-364 13-107 (164)
160 2fbn_A 70 kDa peptidylprolyl i 98.2 1.6E-06 5.6E-11 74.8 7.1 144 72-217 11-174 (198)
161 4gcn_A Protein STI-1; structur 98.2 6E-06 2.1E-10 65.5 9.5 93 272-364 10-111 (127)
162 3upv_A Heat shock protein STI1 98.2 1.4E-05 4.9E-10 63.0 11.6 107 236-344 6-120 (126)
163 3sz7_A HSC70 cochaperone (SGT) 98.2 1.9E-05 6.5E-10 65.6 12.7 107 234-342 11-119 (164)
164 2xcb_A PCRH, regulatory protei 98.2 1E-05 3.4E-10 65.5 10.6 101 237-339 21-123 (142)
165 2dba_A Smooth muscle cell asso 98.2 2.9E-05 9.8E-10 62.8 13.2 107 236-345 30-142 (148)
166 4gcn_A Protein STI-1; structur 98.2 2E-05 6.7E-10 62.4 11.3 26 202-227 86-111 (127)
167 3dss_A Geranylgeranyl transfer 98.1 0.00073 2.5E-08 62.6 22.7 216 145-364 41-303 (331)
168 4b4t_Q 26S proteasome regulato 98.1 2.6E-05 8.8E-10 76.2 13.9 118 245-362 106-242 (434)
169 3q49_B STIP1 homology and U bo 98.1 2.2E-05 7.4E-10 62.8 11.2 100 233-334 8-109 (137)
170 2kck_A TPR repeat; tetratricop 98.1 1.2E-05 4E-10 61.5 9.1 96 238-335 10-110 (112)
171 2xev_A YBGF; tetratricopeptide 98.1 1.4E-05 4.8E-10 63.1 9.7 91 275-365 7-105 (129)
172 1wao_1 Serine/threonine protei 98.1 4.4E-05 1.5E-09 75.6 14.2 118 174-294 12-134 (477)
173 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 3.2E-05 1.1E-09 76.2 13.1 129 236-364 270-414 (457)
174 1elr_A TPR2A-domain of HOP; HO 98.1 3.4E-05 1.2E-09 60.7 10.8 61 201-262 6-66 (131)
175 3ro3_A PINS homolog, G-protein 98.1 2.3E-05 8E-10 64.3 10.1 93 272-364 51-157 (164)
176 2hr2_A Hypothetical protein; a 98.1 2E-05 6.9E-10 64.1 9.2 62 303-364 58-130 (159)
177 1elr_A TPR2A-domain of HOP; HO 98.0 2.4E-05 8.1E-10 61.6 9.5 95 271-365 5-108 (131)
178 1wao_1 Serine/threonine protei 98.0 1.2E-05 4.1E-10 79.6 9.4 116 243-360 15-134 (477)
179 2xev_A YBGF; tetratricopeptide 98.0 7.2E-05 2.5E-09 58.9 12.2 96 241-338 9-112 (129)
180 4b4t_Q 26S proteasome regulato 98.0 0.00023 7.7E-09 69.4 18.1 120 211-330 107-244 (434)
181 3ro3_A PINS homolog, G-protein 98.0 2.5E-05 8.6E-10 64.0 9.6 97 236-332 51-159 (164)
182 3k9i_A BH0479 protein; putativ 98.0 7.5E-06 2.6E-10 63.8 5.7 82 283-364 3-89 (117)
183 1hxi_A PEX5, peroxisome target 98.0 3.7E-05 1.3E-09 60.2 9.1 87 102-192 23-109 (121)
184 1ihg_A Cyclophilin 40; ppiase 97.9 6.1E-05 2.1E-09 71.8 11.8 90 269-358 272-363 (370)
185 3rkv_A Putative peptidylprolyl 97.9 4.2E-05 1.4E-09 63.3 9.1 64 302-365 63-126 (162)
186 2if4_A ATFKBP42; FKBP-like, al 97.9 3.5E-05 1.2E-09 72.6 9.1 145 201-365 181-328 (338)
187 3n71_A Histone lysine methyltr 97.9 0.0001 3.5E-09 72.6 12.5 124 243-366 318-465 (490)
188 3k9i_A BH0479 protein; putativ 97.8 2.1E-05 7.3E-10 61.1 5.5 90 247-337 3-96 (117)
189 2if4_A ATFKBP42; FKBP-like, al 97.8 3.5E-05 1.2E-09 72.6 7.5 114 235-365 180-293 (338)
190 3rkv_A Putative peptidylprolyl 97.8 5E-05 1.7E-09 62.9 7.6 67 270-336 63-131 (162)
191 1dce_A Protein (RAB geranylger 97.8 0.00078 2.7E-08 67.9 17.5 167 185-354 46-244 (567)
192 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00038 1.3E-08 68.5 14.0 123 199-323 268-406 (457)
193 1ihg_A Cyclophilin 40; ppiase 97.7 0.00024 8.1E-09 67.7 12.0 119 67-189 225-362 (370)
194 3ma5_A Tetratricopeptide repea 97.7 0.00028 9.6E-09 52.9 9.3 65 301-365 6-70 (100)
195 2hr2_A Hypothetical protein; a 97.7 0.00044 1.5E-08 56.2 10.7 98 98-227 13-130 (159)
196 3n71_A Histone lysine methyltr 97.6 0.00029 1E-08 69.4 11.0 119 145-263 321-464 (490)
197 2kat_A Uncharacterized protein 97.6 0.00027 9.3E-09 54.4 8.6 78 288-365 3-82 (115)
198 1na3_A Designed protein CTPR2; 97.6 0.0003 1E-08 51.2 8.4 81 270-350 9-91 (91)
199 2l6j_A TPR repeat-containing p 97.6 8.8E-05 3E-09 56.5 5.3 95 96-194 4-104 (111)
200 2l6j_A TPR repeat-containing p 97.5 0.00011 3.7E-09 56.0 5.6 89 270-358 4-100 (111)
201 1klx_A Cysteine rich protein B 97.4 0.001 3.6E-08 53.2 10.3 113 4-124 4-125 (138)
202 1zu2_A Mitochondrial import re 97.4 0.00016 5.3E-09 58.7 5.2 86 281-366 13-121 (158)
203 1dce_A Protein (RAB geranylger 97.4 0.0052 1.8E-07 62.0 17.4 166 12-183 46-241 (567)
204 1na3_A Designed protein CTPR2; 97.3 0.0023 7.7E-08 46.3 10.1 81 96-180 9-89 (91)
205 3qwp_A SET and MYND domain-con 97.3 0.0012 3.9E-08 64.1 10.3 116 277-410 294-427 (429)
206 3mkq_A Coatomer beta'-subunit; 97.2 0.024 8.3E-07 59.9 21.0 130 34-194 633-762 (814)
207 2kat_A Uncharacterized protein 97.2 0.0017 5.8E-08 49.8 8.8 79 12-92 2-80 (115)
208 3bee_A Putative YFRE protein; 97.2 0.003 1E-07 46.4 9.5 69 300-368 4-75 (93)
209 1klx_A Cysteine rich protein B 97.2 0.0042 1.4E-07 49.5 11.3 63 302-366 57-127 (138)
210 1zu2_A Mitochondrial import re 97.1 0.00048 1.6E-08 55.9 4.8 86 249-336 17-125 (158)
211 3ma5_A Tetratricopeptide repea 97.0 0.0025 8.4E-08 47.5 8.0 61 200-261 8-68 (100)
212 3qww_A SET and MYND domain-con 97.0 0.002 7E-08 62.3 9.1 83 282-364 310-410 (433)
213 1wy6_A Hypothetical protein ST 96.8 0.025 8.6E-07 43.6 11.6 140 210-368 18-157 (172)
214 3mkq_A Coatomer beta'-subunit; 96.8 0.079 2.7E-06 55.9 20.0 153 106-296 609-762 (814)
215 1pc2_A Mitochondria fission pr 96.7 0.017 6E-07 46.2 10.9 92 299-416 29-125 (152)
216 3qwp_A SET and MYND domain-con 96.6 0.019 6.5E-07 55.5 12.3 99 240-338 293-412 (429)
217 3mkq_B Coatomer subunit alpha; 96.6 0.22 7.4E-06 40.9 16.6 104 73-195 13-116 (177)
218 1qsa_A Protein (soluble lytic 96.5 0.83 2.8E-05 46.1 24.2 79 66-148 73-151 (618)
219 3ly7_A Transcriptional activat 96.5 0.05 1.7E-06 50.6 13.9 35 197-233 192-231 (372)
220 3qww_A SET and MYND domain-con 96.5 0.0064 2.2E-07 58.8 8.2 86 246-331 310-411 (433)
221 2kc7_A BFR218_protein; tetratr 96.4 0.0085 2.9E-07 44.1 7.1 62 278-339 8-72 (99)
222 2kc7_A BFR218_protein; tetratr 96.4 0.017 5.8E-07 42.4 8.6 86 240-335 6-94 (99)
223 3ly7_A Transcriptional activat 96.3 0.052 1.8E-06 50.5 12.5 68 234-304 277-345 (372)
224 3mkq_B Coatomer subunit alpha; 95.9 0.19 6.6E-06 41.2 13.0 127 178-328 15-141 (177)
225 3bee_A Putative YFRE protein; 95.9 0.048 1.6E-06 39.8 8.5 76 268-344 4-84 (93)
226 2v5f_A Prolyl 4-hydroxylase su 95.6 0.057 1.9E-06 40.3 8.3 67 274-340 9-84 (104)
227 3u64_A Protein TP_0956; tetrat 95.3 0.069 2.4E-06 47.7 8.8 86 287-372 180-276 (301)
228 1pc2_A Mitochondria fission pr 94.8 0.1 3.6E-06 41.7 7.7 70 268-337 30-106 (152)
229 1nzn_A CGI-135 protein, fissio 94.5 0.24 8.4E-06 38.0 8.9 65 300-364 33-102 (126)
230 2v5f_A Prolyl 4-hydroxylase su 94.3 0.23 7.9E-06 36.9 8.4 65 301-365 4-75 (104)
231 1wy6_A Hypothetical protein ST 94.3 1.4 4.9E-05 34.0 14.7 143 172-333 9-156 (172)
232 4gns_B Protein CSD3, chitin bi 93.8 0.53 1.8E-05 48.4 12.3 54 310-363 345-398 (754)
233 4h7y_A Dual specificity protei 93.8 0.47 1.6E-05 37.5 9.2 57 283-340 73-132 (161)
234 3u64_A Protein TP_0956; tetrat 93.8 0.62 2.1E-05 41.6 11.1 81 150-231 180-272 (301)
235 3lvg_A Clathrin heavy chain 1; 93.1 0.0029 9.8E-08 60.3 -5.2 237 64-321 53-323 (624)
236 3lvg_A Clathrin heavy chain 1; 93.0 0.0053 1.8E-07 58.5 -3.4 204 5-220 64-325 (624)
237 4h7y_A Dual specificity protei 92.9 0.34 1.2E-05 38.3 7.1 56 314-369 72-127 (161)
238 2ff4_A Probable regulatory pro 91.4 0.48 1.6E-05 45.0 7.8 70 304-373 173-247 (388)
239 1y8m_A FIS1; mitochondria, unk 91.4 4.3 0.00015 31.8 13.4 91 299-415 36-130 (144)
240 1nzn_A CGI-135 protein, fissio 91.3 1.3 4.4E-05 34.0 8.6 70 268-337 33-109 (126)
241 1v54_E Cytochrome C oxidase po 88.9 2.3 8E-05 30.8 7.6 57 288-344 28-87 (109)
242 4ady_A RPN2, 26S proteasome re 88.8 26 0.0009 37.0 18.8 216 75-296 384-620 (963)
243 1v54_E Cytochrome C oxidase po 88.2 3.6 0.00012 29.9 8.2 63 214-278 25-87 (109)
244 4fhn_B Nucleoporin NUP120; pro 88.1 9.1 0.00031 42.0 15.6 163 70-252 817-989 (1139)
245 3o48_A Mitochondria fission 1 88.1 4.3 0.00015 31.3 9.2 67 299-365 37-107 (134)
246 4gns_B Protein CSD3, chitin bi 87.4 4.7 0.00016 41.5 11.9 126 69-195 252-398 (754)
247 4ady_A RPN2, 26S proteasome re 87.3 11 0.00039 39.6 14.7 258 40-304 384-663 (963)
248 3lpz_A GET4 (YOR164C homolog); 87.1 18 0.0006 33.1 21.6 168 170-364 37-215 (336)
249 3lpz_A GET4 (YOR164C homolog); 86.7 19 0.00064 32.9 20.8 168 67-262 37-215 (336)
250 3ffl_A Anaphase-promoting comp 86.3 10 0.00035 30.5 10.9 29 167-195 121-149 (167)
251 4fhn_B Nucleoporin NUP120; pro 84.9 26 0.00089 38.4 17.1 123 240-368 818-970 (1139)
252 2ff4_A Probable regulatory pro 83.7 2.8 9.5E-05 39.7 7.7 63 240-304 177-247 (388)
253 2wpv_A GET4, UPF0363 protein Y 83.3 26 0.00088 31.7 20.8 170 66-263 34-217 (312)
254 2uwj_G Type III export protein 83.2 11 0.00037 27.3 9.0 86 147-237 20-105 (115)
255 2y69_E Cytochrome C oxidase su 82.9 7.9 0.00027 29.8 8.2 63 214-278 68-130 (152)
256 2y69_E Cytochrome C oxidase su 82.7 9.1 0.00031 29.5 8.5 50 295-344 81-130 (152)
257 4b4t_P 26S proteasome regulato 82.7 35 0.0012 32.7 18.3 317 9-367 30-388 (445)
258 2p58_C Putative type III secre 82.7 12 0.00039 27.2 9.0 79 147-229 21-99 (116)
259 4b4t_P 26S proteasome regulato 82.6 35 0.0012 32.7 19.0 159 202-360 140-319 (445)
260 3ffl_A Anaphase-promoting comp 80.3 6.8 0.00023 31.6 7.5 22 275-296 127-148 (167)
261 3ltm_A Alpha-REP4; protein eng 77.7 29 0.001 28.8 17.9 48 167-214 94-141 (211)
262 1zbp_A Hypothetical protein VP 76.3 14 0.00047 32.5 8.9 49 246-296 9-57 (273)
263 3esl_A Checkpoint serine/threo 76.2 33 0.0011 28.6 13.2 96 298-419 73-173 (202)
264 3o48_A Mitochondria fission 1 74.8 25 0.00086 27.0 9.0 70 230-300 36-109 (134)
265 2wpv_A GET4, UPF0363 protein Y 71.0 60 0.002 29.3 21.8 168 170-364 35-216 (312)
266 3txn_A 26S proteasome regulato 70.3 71 0.0024 29.9 17.0 128 135-262 21-167 (394)
267 1y8m_A FIS1; mitochondria, unk 69.0 39 0.0013 26.4 10.4 70 268-337 37-112 (144)
268 4b4t_R RPN7, 26S proteasome re 68.4 47 0.0016 31.6 11.7 57 273-329 134-195 (429)
269 4b4t_R RPN7, 26S proteasome re 66.7 45 0.0015 31.7 11.2 33 333-367 344-376 (429)
270 3ltj_A Alpharep-4; protein eng 64.5 57 0.002 26.6 18.8 91 166-261 88-178 (201)
271 3ltm_A Alpha-REP4; protein eng 63.5 62 0.0021 26.7 18.9 153 64-227 32-184 (211)
272 1zbp_A Hypothetical protein VP 63.1 18 0.0006 31.8 6.7 58 278-335 5-64 (273)
273 4a1g_A Mitotic checkpoint seri 61.5 58 0.002 25.7 9.1 51 319-369 82-134 (152)
274 3esl_A Checkpoint serine/threo 61.3 64 0.0022 26.9 9.4 52 148-199 94-146 (202)
275 2uwj_G Type III export protein 60.5 45 0.0015 24.1 9.4 77 44-124 20-96 (115)
276 3mv2_A Coatomer subunit alpha; 60.4 97 0.0033 27.9 12.1 56 297-366 200-257 (325)
277 1qsa_A Protein (soluble lytic 60.3 1.4E+02 0.0049 29.8 26.2 182 173-369 290-483 (618)
278 2qx5_A Nucleoporin NIC96; mRNA 59.5 1.1E+02 0.0038 30.9 12.7 23 280-302 548-570 (661)
279 2p58_C Putative type III secre 59.2 48 0.0016 24.0 10.1 77 44-124 21-97 (116)
280 2k0q_A Putative uncharacterize 58.4 3.4 0.00012 27.2 1.0 22 481-502 8-29 (74)
281 1n11_A Ankyrin; clathrin, BAND 55.9 49 0.0017 31.2 9.4 323 16-370 28-371 (437)
282 2wvi_A Mitotic checkpoint seri 55.6 78 0.0027 25.3 9.1 51 319-369 77-129 (164)
283 1wdy_A 2-5A-dependent ribonucl 54.9 59 0.002 28.1 9.2 21 71-91 8-28 (285)
284 3ltj_A Alpharep-4; protein eng 53.4 90 0.0031 25.4 19.9 153 64-227 27-179 (201)
285 2d2s_A Exocyst complex compone 52.2 55 0.0019 28.1 8.0 23 102-124 24-46 (235)
286 2l0z_A Glycoprotein G2; zinc-b 51.3 5.2 0.00018 23.1 0.9 11 494-504 19-29 (42)
287 4gq2_M Nucleoporin NUP120; bet 48.3 2.6E+02 0.009 29.7 14.2 126 71-212 816-949 (950)
288 2nsz_A Programmed cell death p 47.3 91 0.0031 23.7 8.1 62 68-131 10-76 (129)
289 4a1g_A Mitotic checkpoint seri 46.8 1E+02 0.0036 24.2 8.5 50 115-166 84-134 (152)
290 2nsz_A Programmed cell death p 46.4 60 0.002 24.8 6.6 63 171-233 10-77 (129)
291 1wdy_A 2-5A-dependent ribonucl 44.5 81 0.0028 27.1 8.4 51 36-90 8-61 (285)
292 2d2s_A Exocyst complex compone 44.2 84 0.0029 26.9 7.9 44 319-364 76-119 (235)
293 2ion_A PDCD4, programmed cell 41.6 78 0.0027 25.0 6.8 57 68-124 12-73 (152)
294 3kea_A K1L; tropism, ANK repea 41.5 1.1E+02 0.0037 26.8 8.8 182 176-372 36-224 (285)
295 3mkr_B Coatomer subunit alpha; 41.2 1.8E+02 0.0062 26.2 9.7 57 297-367 191-249 (320)
296 3txn_A 26S proteasome regulato 40.5 2.3E+02 0.0079 26.4 27.0 89 267-368 253-346 (394)
297 2hgo_A CASSIICOLIN; toxin, dis 37.9 6.5 0.00022 19.6 -0.1 13 493-505 8-22 (27)
298 2ion_A PDCD4, programmed cell 37.4 56 0.0019 25.8 5.3 62 171-232 12-78 (152)
299 4aez_C MAD3, mitotic spindle c 36.2 1.1E+02 0.0039 25.8 7.2 51 319-369 131-183 (223)
300 2wvi_A Mitotic checkpoint seri 34.1 1.7E+02 0.0058 23.4 7.6 60 47-106 77-137 (164)
301 3hra_A Ankyrin repeat family p 34.0 1.2E+02 0.004 24.5 7.3 76 41-121 47-128 (201)
302 2pk8_A Uncharacterized protein 33.1 32 0.0011 24.2 2.7 30 393-422 13-42 (103)
303 3ygs_P Procaspase 9; apoptosis 32.5 51 0.0018 23.6 4.0 38 182-219 51-88 (97)
304 4b4t_S RPN3, 26S proteasome re 31.1 3.2E+02 0.011 26.5 10.4 65 96-162 231-299 (523)
305 3ygs_P Procaspase 9; apoptosis 30.6 55 0.0019 23.4 3.9 39 79-117 51-89 (97)
306 4gq2_M Nucleoporin NUP120; bet 30.5 4.2E+02 0.014 28.1 12.3 87 240-332 816-927 (950)
307 2zu6_B Programmed cell death p 30.2 2.7E+02 0.0091 24.9 9.2 216 68-287 6-254 (307)
308 3eu9_A Huntingtin-interacting 29.7 1.5E+02 0.005 24.5 7.4 180 174-366 45-237 (240)
309 2p1h_A APAF-1, apoptotic prote 28.9 1.5E+02 0.0051 20.8 6.2 61 153-217 25-85 (94)
310 4b4t_S RPN3, 26S proteasome re 28.9 1.4E+02 0.0049 29.0 7.5 62 235-296 232-296 (523)
311 2fe3_A Peroxide operon regulat 28.5 1.4E+02 0.0047 23.1 6.3 63 223-287 11-73 (145)
312 1k1a_A B-cell lymphoma 3-encod 28.2 2.5E+02 0.0086 23.1 10.8 83 39-122 15-102 (241)
313 3eiq_C Programmed cell death p 28.0 3.5E+02 0.012 24.8 15.0 77 202-280 220-298 (358)
314 2b7e_A PRE-mRNA processing pro 28.0 53 0.0018 21.1 2.9 30 11-40 2-31 (59)
315 3bqo_A Telomeric repeat-bindin 27.7 1.3E+02 0.0044 24.9 5.8 53 286-338 94-153 (211)
316 2lo3_A SAGA-associated factor 27.6 15 0.0005 21.5 0.2 12 461-472 16-27 (44)
317 3ljn_A Hypothetical protein; a 27.5 1.2E+02 0.0042 27.4 6.9 82 278-361 178-266 (364)
318 2yru_A Steroid receptor RNA ac 27.1 86 0.0029 23.5 4.5 43 118-162 48-90 (118)
319 2xig_A Ferric uptake regulatio 26.2 1.9E+02 0.0065 22.5 6.8 62 224-287 17-78 (150)
320 2ijq_A Hypothetical protein; s 25.8 1.4E+02 0.0046 23.9 5.6 17 8-24 45-61 (161)
321 3jxi_A Vanilloid receptor-rela 25.4 51 0.0018 28.3 3.6 88 5-93 12-118 (260)
322 4aez_C MAD3, mitotic spindle c 25.4 1.4E+02 0.0049 25.2 6.0 61 46-106 130-191 (223)
323 1n11_A Ankyrin; clathrin, BAND 25.4 1.9E+02 0.0066 26.9 8.0 299 36-369 17-337 (437)
324 3qye_A TBC1 domain family memb 25.0 3.8E+02 0.013 24.0 10.4 129 11-148 165-309 (331)
325 1ug3_A EIF4GI, eukaryotic prot 24.1 4E+02 0.014 24.1 9.9 26 69-94 15-40 (339)
326 2w57_A Ferric uptake regulatio 22.7 2.5E+02 0.0087 21.7 6.9 62 19-81 6-68 (150)
327 1mzb_A Ferric uptake regulatio 22.5 2.4E+02 0.0081 21.4 6.5 60 19-79 7-67 (136)
328 2fe3_A Peroxide operon regulat 22.5 2.4E+02 0.0082 21.7 6.6 39 145-183 33-71 (145)
329 2yru_A Steroid receptor RNA ac 22.2 1.1E+02 0.0038 22.9 4.3 16 76-91 72-87 (118)
330 1k1a_A B-cell lymphoma 3-encod 21.5 1.5E+02 0.0053 24.5 5.9 22 143-164 16-37 (241)
331 1oai_A Nuclear RNA export fact 20.9 59 0.002 20.8 2.2 25 109-134 33-57 (59)
332 4ets_A Ferric uptake regulatio 20.8 1.7E+02 0.0057 23.3 5.4 71 216-287 14-86 (162)
333 3l6a_A Eukaryotic translation 20.3 3.5E+02 0.012 24.8 8.2 24 136-159 15-38 (364)
334 3eiq_C Programmed cell death p 20.0 3.2E+02 0.011 25.1 7.8 77 99-178 220-298 (358)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.8e-33 Score=287.49 Aligned_cols=357 Identities=10% Similarity=-0.050 Sum_probs=295.0
Q ss_pred cccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCH
Q 010642 2 VRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKS 81 (505)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 81 (505)
+..|.+.|++++|+.+|++|.. ..|+..++..++.+|...|++++|.++++.+... +++..+++.++.+|.+.|++
T Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 166 (597)
T 2xpi_A 91 RHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDW 166 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhH
Confidence 5678899999999999999985 4678899999999999999999999999987543 67899999999999999999
Q ss_pred HHHHHHHhcCCCC-------------------ChhHHHHHHHHHHHCCChhHHHHHHHHchhccC---------------
Q 010642 82 FEACKLFDEIPQR-------------------DTVAWNVLISCYIRNQRTRDALCLFDNLNREES--------------- 127 (505)
Q Consensus 82 ~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--------------- 127 (505)
++|.++|+++... +..+|+.++.+|.+.|++++|+++|++|.+...
T Consensus 167 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 246 (597)
T 2xpi_A 167 QGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLL 246 (597)
T ss_dssp HHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcc
Confidence 9999999965433 488999999999999999999999999865211
Q ss_pred -----------------------------------------------------CCCCCHHHHHHHHHHHHhccChHHHHH
Q 010642 128 -----------------------------------------------------GCKPDDVTCLLVLQACAHLGALEFGEK 154 (505)
Q Consensus 128 -----------------------------------------------------~~~pd~~t~~~ll~~~~~~~~~~~a~~ 154 (505)
..+++..++..++.++.+.|++++|.+
T Consensus 247 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 326 (597)
T 2xpi_A 247 TADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLA 326 (597)
T ss_dssp CHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHH
Confidence 012677788888999999999999999
Q ss_pred HHHHHHHcCC---------------------------------CCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCC
Q 010642 155 IHRYISEHGY---------------------------------GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKD 198 (505)
Q Consensus 155 i~~~~~~~~~---------------------------------~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~ 198 (505)
+|+++.+.+. +.+..+++.++.+|.+.|++++|.++|+++. ..+
T Consensus 327 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 406 (597)
T 2xpi_A 327 ITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF 406 (597)
T ss_dssp HHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 9998886541 2345677777888888888888888888764 346
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHH
Q 010642 199 VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVD 278 (505)
Q Consensus 199 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 278 (505)
..+|+.++.+|.+.|++++|+++|++|.+.+ +++..++..++.+|.+.|++++|.++|+++.+. .+.+..+|+.++.
T Consensus 407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 483 (597)
T 2xpi_A 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGV 483 (597)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 7788888888888888888888888888753 236778888888888888888888888888763 2346778888888
Q ss_pred HHHhcCChHHHHHHHHHC-------CCCCC--HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhC
Q 010642 279 LLGRAGLLDQAYQLITSM-------GVKPD--STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSV 349 (505)
Q Consensus 279 ~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 349 (505)
.|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|...++++.+.+|+++.+|..++.+|.+.
T Consensus 484 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (597)
T 2xpi_A 484 VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHK 563 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 888888888888888887 44676 678888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhC
Q 010642 350 GDWEKVKELREFMNEK 365 (505)
Q Consensus 350 g~~~~a~~~~~~m~~~ 365 (505)
|++++|.+.++++.+.
T Consensus 564 g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 564 KIPGLAITHLHESLAI 579 (597)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc
Confidence 8888888888888764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-32 Score=284.73 Aligned_cols=391 Identities=10% Similarity=-0.013 Sum_probs=320.6
Q ss_pred cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHH
Q 010642 8 SSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKL 87 (505)
Q Consensus 8 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 87 (505)
.|.+..+...+..+. .++...|+.++..+.+.|++++|..++++++.. .|+..++..++..|.+.|++++|..+
T Consensus 66 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 66 DGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 344444545544332 357889999999999999999999999999865 46778999999999999999999999
Q ss_pred HhcCC--CCChhHHHHHHHHHHHCCChhHHHHHHHHchhccC--------------CCCCCHHHHHHHHHHHHhccChHH
Q 010642 88 FDEIP--QRDTVAWNVLISCYIRNQRTRDALCLFDNLNREES--------------GCKPDDVTCLLVLQACAHLGALEF 151 (505)
Q Consensus 88 ~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--------------~~~pd~~t~~~ll~~~~~~~~~~~ 151 (505)
|+.+. .++..+|+.++.+|.+.|++++|+++|+++... . +.+++..+|+.++.++.+.|++++
T Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 140 LTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPF-RKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTT-C----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCc-cccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 99994 578999999999999999999999999964331 1 335578999999999999999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHH--------------------------------------HHHHHHhcCCHHHHHHHHhc
Q 010642 152 GEKIHRYISEHGYGSKMNLCNS--------------------------------------LIAMYSKCGSLGMAFEVFKG 193 (505)
Q Consensus 152 a~~i~~~~~~~~~~~~~~~~~~--------------------------------------l~~~y~~~g~~~~A~~~~~~ 193 (505)
|.++|+++.+.+ +.+...+.. ++.+|.+.|++++|.++|++
T Consensus 219 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 297 (597)
T 2xpi_A 219 AKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 999999999875 333433333 36677789999999999999
Q ss_pred CCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcc
Q 010642 194 MPE--KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIH 271 (505)
Q Consensus 194 m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 271 (505)
+.+ ++..+|+.++.+|.+.|++++|+++|+++.+.+. .+..++..++.++.+.|++++|..+++++.+ ..+.+..
T Consensus 298 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~ 374 (597)
T 2xpi_A 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVD--RHPEKAV 374 (597)
T ss_dssp STTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTSHH
T ss_pred hhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--hCcccHH
Confidence 987 7999999999999999999999999999997653 3667899999999999999999999999986 3455788
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhC
Q 010642 272 HYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSV 349 (505)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 349 (505)
+++.++.+|.+.|++++|.++|+++ ...| +..+|+.++.++.+.|++++|.++++++.+..|++..+|..++.+|.+.
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 454 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQL 454 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 9999999999999999999999998 4344 5789999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCccccc
Q 010642 350 GDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEI 418 (505)
Q Consensus 350 g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~ 418 (505)
|++++|.++|+++.+.... ++.. |. . ....+...++.+++.+.++++.....+.|..|+.
T Consensus 455 g~~~~A~~~~~~~~~~~~~-~~~~-~~---~----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~ 514 (597)
T 2xpi_A 455 GNILLANEYLQSSYALFQY-DPLL-LN---E----LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514 (597)
T ss_dssp TCHHHHHHHHHHHHHHCCC-CHHH-HH---H----HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHH-HH---H----HHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh
Confidence 9999999999999875422 2211 11 0 1122346788999999998887776666888874
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.6e-29 Score=251.95 Aligned_cols=182 Identities=16% Similarity=0.194 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccC---------hHHHHHHHHHHHHcCCCCch
Q 010642 98 AWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGA---------LEFGEKIHRYISEHGYGSKM 168 (505)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~---------~~~a~~i~~~~~~~~~~~~~ 168 (505)
.++.+|.+|++.|++++|+++|++|.. .|++||..||+++|.+|++.+. ++.|.++|++|.+.|+.||.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~--~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARR--NGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHH--HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 466666777777777777777777766 6777777777777777765433 56677777777777777777
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010642 169 NLCNSLIAMYSKCGSLGMAFEVFKGMP----EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSAC 244 (505)
Q Consensus 169 ~~~~~l~~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 244 (505)
.+|++||.+|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 777777777777777777777777664 4577777777777777777777777777777777777777777777777
Q ss_pred hccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHh
Q 010642 245 SHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGR 282 (505)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 282 (505)
++.|++++|.++|++|.+. +..|+..||+.++..|..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred hhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 7777777777777777765 777777777777777664
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=6.9e-27 Score=228.03 Aligned_cols=351 Identities=11% Similarity=0.037 Sum_probs=308.4
Q ss_pred cchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Q 010642 4 AYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFE 83 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 83 (505)
.+.+.|++++|+..++.+.+.. +.+...+..+...+...|++++|...++.+++.. +.+..++..+...|.+.|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 4567899999999999998864 2245566777778889999999999999998875 5688899999999999999999
Q ss_pred HHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC-HHHHHHHHHHHHhccChHHHHHHHHHH
Q 010642 84 ACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD-DVTCLLVLQACAHLGALEFGEKIHRYI 159 (505)
Q Consensus 84 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~ 159 (505)
|...|+++.+ .+..+|..+..++.+.|++++|++.|+++.. ..|+ ...+..+...+...|++++|.+.+.++
T Consensus 86 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ----YNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH----HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999998753 3567899999999999999999999999977 3455 456677888889999999999999999
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHH
Q 010642 160 SEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP-DDQ 235 (505)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ 235 (505)
.+.. |.+..+++.+...|.+.|++++|...|+++. ..+...|..+...+...|++++|+..|++.... .| +..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHH
Confidence 9875 5678899999999999999999999999875 345678999999999999999999999999874 34 467
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CC-CCCHHHHHHHHHHHH
Q 010642 236 TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GV-KPDSTIWRTLLGACR 313 (505)
Q Consensus 236 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~ 313 (505)
++..+...+...|++++|...|+++.+. .+.+...|..+...|.+.|++++|.+.|+++ .. +++..+|..+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 8889999999999999999999999873 2335678999999999999999999999998 33 346889999999999
Q ss_pred hcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 314 IHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
..|++++|...++++.+..|++..++..++..|.+.|++++|.+.++++.+.
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999863
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2.6e-29 Score=250.39 Aligned_cols=212 Identities=14% Similarity=0.136 Sum_probs=174.7
Q ss_pred hHHHHHHHHHHhCCCCCChh-hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhc
Q 010642 12 EEGFYLFEKMRQKRIPTNPF-ACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDE 90 (505)
Q Consensus 12 ~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 90 (505)
..+..+.+++.+.+..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 45556677787777665544 58889999999999999999999999999999999999999999887653221
Q ss_pred CCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhH
Q 010642 91 IPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNL 170 (505)
Q Consensus 91 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 170 (505)
.+.+..++|.++|++|.. .|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~--~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t 142 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIV--DKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS 142 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce
Confidence 223456888999999988 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 010642 171 CNSLIAMYSKCGSLGMAFEVFKGMP----EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSH 246 (505)
Q Consensus 171 ~~~l~~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 246 (505)
|++||.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|++.|..|+..||+.++..|..
T Consensus 143 yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 143 YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 9999999999999999999999986 589999999999999999999999999999999999999999999998876
Q ss_pred c
Q 010642 247 C 247 (505)
Q Consensus 247 ~ 247 (505)
.
T Consensus 223 ~ 223 (501)
T 4g26_A 223 E 223 (501)
T ss_dssp H
T ss_pred C
Confidence 4
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=3e-25 Score=216.39 Aligned_cols=339 Identities=10% Similarity=-0.031 Sum_probs=299.2
Q ss_pred cchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Q 010642 4 AYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFE 83 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 83 (505)
.+.+.|++++|...++...+.. +.+..+|..+..++.+.|++++|...++++++.. +.+...+..+...|.+.|++++
T Consensus 42 ~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 119 (388)
T 1w3b_A 42 IHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEG 119 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHH
Confidence 4567899999999999998864 4477899999999999999999999999999875 4466789999999999999999
Q ss_pred HHHHHhcCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHH
Q 010642 84 ACKLFDEIPQ--R-DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYIS 160 (505)
Q Consensus 84 A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 160 (505)
|.+.|+++.+ | +...+..+...+...|++++|++.|+++.. . .+.+..++..+...+...|++++|...++++.
T Consensus 120 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 196 (388)
T 1w3b_A 120 AVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE--T-QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 196 (388)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999998754 3 566788899999999999999999999987 2 23457889999999999999999999999999
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 010642 161 EHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTF 237 (505)
Q Consensus 161 ~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 237 (505)
+.+ |.+...+..+...+...|++++|...|++.. ..+..+|..+...|.+.|++++|++.|+++.+.+. .+..++
T Consensus 197 ~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~ 274 (388)
T 1w3b_A 197 TLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAY 274 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHH
T ss_pred hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHH
Confidence 986 5678899999999999999999999998764 34678899999999999999999999999998532 246788
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhc
Q 010642 238 TGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIH 315 (505)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 315 (505)
..+...+.+.|++++|...|+++.+. .+.+..++..+...+.+.|++++|.+.++++ ...| +..++..+...+...
T Consensus 275 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 352 (388)
T 1w3b_A 275 CNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 99999999999999999999999874 4567789999999999999999999999998 5556 477899999999999
Q ss_pred CchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCC
Q 010642 316 KHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGD 351 (505)
Q Consensus 316 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 351 (505)
|++++|...++++.+..|..+..|..+...+...|+
T Consensus 353 g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 353 GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999999999999998887764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.8e-23 Score=211.33 Aligned_cols=355 Identities=7% Similarity=-0.059 Sum_probs=300.9
Q ss_pred cchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Q 010642 4 AYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFE 83 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 83 (505)
.+.+.|++++|+..|+++.+.+ |+..+|..+..++...|++++|.+.++.+++.+ +.+..++..+..+|.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHH
Confidence 4678999999999999999875 789999999999999999999999999999986 5577899999999999999999
Q ss_pred HHHHHhcCCCCC--------------------------------------------------------------------
Q 010642 84 ACKLFDEIPQRD-------------------------------------------------------------------- 95 (505)
Q Consensus 84 A~~~~~~~~~~~-------------------------------------------------------------------- 95 (505)
|...|+++...+
T Consensus 92 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
T 2gw1_A 92 AMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171 (514)
T ss_dssp HHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence 999998763211
Q ss_pred --------------hhHHHHHHHHHHH---CCChhHHHHHHHHchh-----c--cCCC----CCCHHHHHHHHHHHHhcc
Q 010642 96 --------------TVAWNVLISCYIR---NQRTRDALCLFDNLNR-----E--ESGC----KPDDVTCLLVLQACAHLG 147 (505)
Q Consensus 96 --------------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~--~~~~----~pd~~t~~~ll~~~~~~~ 147 (505)
...+..+...+.. .|++++|+..|+++.. . .... +.+..++..+...+...|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (514)
T 2gw1_A 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN 251 (514)
T ss_dssp CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCC
Confidence 2333344444443 8999999999999865 1 0110 223567788888999999
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHH
Q 010642 148 ALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGA 224 (505)
Q Consensus 148 ~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 224 (505)
++++|...++.+.+.... ..++..+...|...|++++|...|+++.+ .+...|..+...|...|++++|+..|++
T Consensus 252 ~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 329 (514)
T 2gw1_A 252 DPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDK 329 (514)
T ss_dssp CHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999998633 88899999999999999999999997653 4677899999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC----CCCC
Q 010642 225 MQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM----GVKP 300 (505)
Q Consensus 225 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p 300 (505)
+...... +...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ +..|
T Consensus 330 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 406 (514)
T 2gw1_A 330 AKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD 406 (514)
T ss_dssp HHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred HHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 9986432 5678888999999999999999999999874 3345678899999999999999999999987 2222
Q ss_pred C----HHHHHHHHHHHHh---cCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 301 D----STIWRTLLGACRI---HKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 301 ~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
+ ...|..+...+.. .|++++|...++++.+..|.++.++..++.+|.+.|++++|...+++..+..
T Consensus 407 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 407 GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 2 4488889999999 9999999999999999999999999999999999999999999999988754
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=6.1e-23 Score=204.00 Aligned_cols=323 Identities=11% Similarity=-0.011 Sum_probs=265.8
Q ss_pred chHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhc
Q 010642 11 PEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDE 90 (505)
Q Consensus 11 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 90 (505)
...+...+.+..... +.+...+..+...+.+.|++++|..+++.+++.. +.+..++..+...|...|++++|...|++
T Consensus 8 ~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 8 SSGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 345555666666543 3466788999999999999999999999999875 55788999999999999999999999998
Q ss_pred CCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCH----HHHHHH------------HHHHHhccChHH
Q 010642 91 IPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDD----VTCLLV------------LQACAHLGALEF 151 (505)
Q Consensus 91 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~----~t~~~l------------l~~~~~~~~~~~ 151 (505)
+.+ .+..+|..+...|.+.|++++|+..|+++.. ..|+. ..+..+ ...+...|++++
T Consensus 86 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 86 VIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK----SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 764 4678999999999999999999999999976 44543 454444 444888999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 010642 152 GEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRA 228 (505)
Q Consensus 152 a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 228 (505)
|...++.+.+.. +.+..++..+..+|.+.|++++|...|+++. ..+..+|..+...|...|++++|+..|+++...
T Consensus 162 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 162 AIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999875 6688899999999999999999999999875 357889999999999999999999999999874
Q ss_pred CCCCCHH-HHHHH------------HHHHhccCCHHHHHHHHHHHhhhcCCcCC-----cchHHHHHHHHHhcCChHHHH
Q 010642 229 GVFPDDQ-TFTGV------------LSACSHCGLVDEGMMFLDRMSKDFGILPN-----IHHYGCVVDLLGRAGLLDQAY 290 (505)
Q Consensus 229 g~~p~~~-t~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~ 290 (505)
.|+.. .+..+ ...+.+.|++++|..+|+++.+. .|+ ..++..+...+.+.|++++|.
T Consensus 241 --~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 241 --DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred --CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 45443 33333 78899999999999999999874 343 347889999999999999999
Q ss_pred HHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010642 291 QLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNL 345 (505)
Q Consensus 291 ~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 345 (505)
+.++++ ...| +..+|..+..+|...|++++|...++++.+..|.++..+..+..+
T Consensus 316 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 999997 4445 688999999999999999999999999999999998888888744
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=2.4e-22 Score=199.67 Aligned_cols=342 Identities=12% Similarity=0.047 Sum_probs=276.4
Q ss_pred ccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHH
Q 010642 3 RAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSF 82 (505)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 82 (505)
..|.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+++.+ +.+..++..+...|.+.|+++
T Consensus 34 ~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 111 (450)
T 2y4t_A 34 KKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLD 111 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHH
Confidence 45778999999999999999864 3467889999999999999999999999999986 457889999999999999999
Q ss_pred HHHHHHhcCCC--C-Ch---hHHHHHH------------HHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHH
Q 010642 83 EACKLFDEIPQ--R-DT---VAWNVLI------------SCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACA 144 (505)
Q Consensus 83 ~A~~~~~~~~~--~-~~---~~~~~li------------~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~ 144 (505)
+|.+.|+++.+ | +. .+|..++ ..+.+.|++++|+..|+++.. ..+.+..++..+..++.
T Consensus 112 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~ 188 (450)
T 2y4t_A 112 EAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE---VCVWDAELRELRAECFI 188 (450)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHH
Confidence 99999998865 3 33 6666664 448999999999999999987 23457788999999999
Q ss_pred hccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHH------------HHHH
Q 010642 145 HLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAM------------ISGL 209 (505)
Q Consensus 145 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~l------------i~~~ 209 (505)
..|++++|.+.+..+.+.. +.+..++..+..+|.+.|++++|...|+++.+ .+...+..+ ...+
T Consensus 189 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (450)
T 2y4t_A 189 KEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL 267 (450)
T ss_dssp HTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999875 66789999999999999999999999998752 344555555 7889
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcC
Q 010642 210 AMNGHGRDAIESFGAMQRAGVFPD-----DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAG 284 (505)
Q Consensus 210 ~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 284 (505)
.+.|++++|+..|+++... .|+ ...+..+...+.+.|++++|...++++.+. .+.+...|..+..+|...|
T Consensus 268 ~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~ 343 (450)
T 2y4t_A 268 IRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEE 343 (450)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhc
Confidence 9999999999999999884 455 347888899999999999999999999863 2346788999999999999
Q ss_pred ChHHHHHHHHHC-CCCCC-HHHHHHHHHH------------HHhcC-----chhHHHHHHHH-HHHhcCCCCc-------
Q 010642 285 LLDQAYQLITSM-GVKPD-STIWRTLLGA------------CRIHK-----HVTLGERVIEH-LIELKAQESG------- 337 (505)
Q Consensus 285 ~~~~A~~~~~~~-~~~p~-~~~~~~ll~~------------~~~~g-----~~~~a~~~~~~-~~~~~~~~~~------- 337 (505)
++++|.+.++++ ...|+ ...+..+..+ |...| +.+++.+.+++ ..+..|++..
T Consensus 344 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~ 423 (450)
T 2y4t_A 344 MYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKK 423 (450)
T ss_dssp CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHH
Confidence 999999999998 66675 4556555532 33334 56677888876 5555554322
Q ss_pred ---hHHHHHHHHHhCCCHHH
Q 010642 338 ---DYVLLLNLYSSVGDWEK 354 (505)
Q Consensus 338 ---~~~~l~~~~~~~g~~~~ 354 (505)
.+..+..+|...|+.+.
T Consensus 424 a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 424 AEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHHHHHHHhCCHHH
Confidence 34455555555555443
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=4.8e-21 Score=194.80 Aligned_cols=352 Identities=11% Similarity=0.006 Sum_probs=286.5
Q ss_pred cchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Q 010642 4 AYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFE 83 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 83 (505)
.+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|.+.++.+++.+ +.+..++..+...|...|++++
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHH
Confidence 4678999999999999999875 3477889999999999999999999999999987 5578899999999999999999
Q ss_pred HHHHHhcCCC-CChh-----------------------------------------------------------------
Q 010642 84 ACKLFDEIPQ-RDTV----------------------------------------------------------------- 97 (505)
Q Consensus 84 A~~~~~~~~~-~~~~----------------------------------------------------------------- 97 (505)
|...|+.+.. |+..
T Consensus 112 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (537)
T 3fp2_A 112 AMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDT 191 (537)
T ss_dssp HHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCS
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccccc
Confidence 9999864421 1100
Q ss_pred ----HHHHHHHHHHH--------CCChhHHHHHHHHchhccCCCCCC--------HHHHHHHHHHHHhccChHHHHHHHH
Q 010642 98 ----AWNVLISCYIR--------NQRTRDALCLFDNLNREESGCKPD--------DVTCLLVLQACAHLGALEFGEKIHR 157 (505)
Q Consensus 98 ----~~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~~~pd--------~~t~~~ll~~~~~~~~~~~a~~i~~ 157 (505)
.+..+...+.. .|++++|+.+|+++.. ..|+ ..++..+...+...|++++|...+.
T Consensus 192 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~----~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 267 (537)
T 3fp2_A 192 AYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS----ANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267 (537)
T ss_dssp SHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH----HCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 11111111111 2478899999999876 3444 2356667778888999999999999
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 010642 158 YISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDD 234 (505)
Q Consensus 158 ~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 234 (505)
.+.+.. |+..++..+...|...|++++|...|+++. ..+..+|..+...|...|++++|+..|+++...... +.
T Consensus 268 ~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~ 344 (537)
T 3fp2_A 268 ESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NV 344 (537)
T ss_dssp HHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CS
T ss_pred HHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CH
Confidence 999975 448889999999999999999999999875 346788999999999999999999999999885322 45
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC----C----CCCCHHHHH
Q 010642 235 QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM----G----VKPDSTIWR 306 (505)
Q Consensus 235 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~----~~p~~~~~~ 306 (505)
..+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ + .......+.
T Consensus 345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 422 (537)
T 3fp2_A 345 YPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI 422 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 78888999999999999999999999874 3445678899999999999999999999987 1 111233344
Q ss_pred HHHHHHHhc----------CchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 307 TLLGACRIH----------KHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 307 ~ll~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
.+...+... |++++|...++++.+..|.++..+..+..+|.+.|++++|.+.+++..+..
T Consensus 423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 555667777 999999999999999999999999999999999999999999999988754
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=3.7e-20 Score=187.04 Aligned_cols=361 Identities=12% Similarity=-0.007 Sum_probs=288.6
Q ss_pred hhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHH
Q 010642 30 PFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCY 106 (505)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 106 (505)
...+......+...|++++|...|+.+++.. |+..++..+...|.+.|++++|...|+++.+ .+..+|..+..+|
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 3457777888999999999999999999986 6899999999999999999999999998753 4678999999999
Q ss_pred HHCCChhHHHHHHHHchhccCCCC--------------------------------------------------------
Q 010642 107 IRNQRTRDALCLFDNLNREESGCK-------------------------------------------------------- 130 (505)
Q Consensus 107 ~~~g~~~~A~~~~~~m~~~~~~~~-------------------------------------------------------- 130 (505)
.+.|++++|+..|+++.. .+-.
T Consensus 84 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSL--NGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHTTCHHHHHHHHHHHHH--SSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHhhHHHHHHHHHHHHh--cCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999876 2210
Q ss_pred ---------------------C-CHHHHHHHHHHHHh---ccChHHHHHHHHHHHH-----cCC--------CCchhHHH
Q 010642 131 ---------------------P-DDVTCLLVLQACAH---LGALEFGEKIHRYISE-----HGY--------GSKMNLCN 172 (505)
Q Consensus 131 ---------------------p-d~~t~~~ll~~~~~---~~~~~~a~~i~~~~~~-----~~~--------~~~~~~~~ 172 (505)
| +...+......+.. .|++++|...++++.+ ..- +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 0 12222333333333 7899999999999988 311 33467788
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 010642 173 SLIAMYSKCGSLGMAFEVFKGMP--EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLV 250 (505)
Q Consensus 173 ~l~~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 250 (505)
.+...|...|++++|...|+++. .|+...|..+...|...|++++|+..|+++..... .+...+..+...+...|++
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCH
Confidence 89999999999999999999875 34477889999999999999999999999987532 3567888899999999999
Q ss_pred HHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010642 251 DEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHL 328 (505)
Q Consensus 251 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 328 (505)
++|...++++.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++
T Consensus 321 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999873 3345778889999999999999999999988 3333 5678888999999999999999999999
Q ss_pred HHhcCCCCc------hHHHHHHHHHh---CCCHHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEecCCCCcchHHHH
Q 010642 329 IELKAQESG------DYVLLLNLYSS---VGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIY 399 (505)
Q Consensus 329 ~~~~~~~~~------~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (505)
.+..|.++. .+..++..|.. .|++++|...+++..+.. |+....+.. ....+...++.+++.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~-------la~~~~~~g~~~~A~ 469 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD--PRSEQAKIG-------LAQMKLQQEDIDEAI 469 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC--TTCHHHHHH-------HHHHHHHTTCHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC--cccHHHHHH-------HHHHHHHhcCHHHHH
Confidence 998877755 89999999999 999999999999988753 221111100 011122446677777
Q ss_pred HHHHHHH
Q 010642 400 QMLDEIN 406 (505)
Q Consensus 400 ~~l~~l~ 406 (505)
..+++..
T Consensus 470 ~~~~~a~ 476 (514)
T 2gw1_A 470 TLFEESA 476 (514)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666654
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=3.4e-19 Score=170.90 Aligned_cols=312 Identities=10% Similarity=-0.027 Sum_probs=223.2
Q ss_pred ChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHH
Q 010642 29 NPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISC 105 (505)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 105 (505)
|...+..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|+++.+ .+..+|..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 34566777777888888888888888888775 44677888888888888888888888887653 366778888888
Q ss_pred HHHCCChhHHHHHHHHchhccCCCCC----CHHHHHHH------------HHHHHhccChHHHHHHHHHHHHcCCCCchh
Q 010642 106 YIRNQRTRDALCLFDNLNREESGCKP----DDVTCLLV------------LQACAHLGALEFGEKIHRYISEHGYGSKMN 169 (505)
Q Consensus 106 ~~~~g~~~~A~~~~~~m~~~~~~~~p----d~~t~~~l------------l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~ 169 (505)
|...|++++|+..|++... ..| +...+..+ ...+...|++++|.+.+..+.+.. +.+..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 155 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLK----SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAE 155 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHcCChHHHHHHHHHHHh----cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchH
Confidence 8888888888888888866 445 33333333 466777888888888888888764 55677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHH-------
Q 010642 170 LCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDD-QTFT------- 238 (505)
Q Consensus 170 ~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~------- 238 (505)
++..+...|.+.|++++|...|+++. ..+..+|..+...|...|++++|...|++..+. .|+. ..+.
T Consensus 156 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 156 LRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKK 233 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHH
Confidence 78888888888888888888887654 245667888888888888888888888887764 2332 2222
Q ss_pred -----HHHHHHhccCCHHHHHHHHHHHhhhcCCcCCc--chHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHH
Q 010642 239 -----GVLSACSHCGLVDEGMMFLDRMSKDFGILPNI--HHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLL 309 (505)
Q Consensus 239 -----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 309 (505)
.+...+.+.|++++|...++++.+.....+.. ..+..+...+.+.|++++|.+.+++. ...| +..+|..+.
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 313 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 22455777788888888888777642111111 22445667777788888888887777 3334 566777777
Q ss_pred HHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHh
Q 010642 310 GACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSS 348 (505)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 348 (505)
..+...|++++|...++++.+..|.++..+..+..++..
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 778888888888888888888877777666666655543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=6.6e-19 Score=168.85 Aligned_cols=296 Identities=11% Similarity=0.033 Sum_probs=248.9
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHH
Q 010642 64 DSQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVL 140 (505)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll 140 (505)
++..+..+...+...|++++|...|+++.+ .+..+|..+...+...|++++|+..|+++.. . .+.+...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA--L-KMDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--H-CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--h-CCCcchHHHHHH
Confidence 456778888899999999999999998753 4678999999999999999999999999987 2 233668889999
Q ss_pred HHHHhccChHHHHHHHHHHHHcCCC---CchhHHHHH------------HHHHHhcCCHHHHHHHHhcCC---CCChhHH
Q 010642 141 QACAHLGALEFGEKIHRYISEHGYG---SKMNLCNSL------------IAMYSKCGSLGMAFEVFKGMP---EKDVVSW 202 (505)
Q Consensus 141 ~~~~~~~~~~~a~~i~~~~~~~~~~---~~~~~~~~l------------~~~y~~~g~~~~A~~~~~~m~---~~~~~~~ 202 (505)
..+...|++++|...++.+.+.. + .+...+..+ ...|...|++++|...|+++. ..+...+
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 157 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELR 157 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 99999999999999999999874 4 455556555 688999999999999999875 3567889
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHH--------
Q 010642 203 SAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYG-------- 274 (505)
Q Consensus 203 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-------- 274 (505)
..+...|...|++++|+..++++.... +.+..++..+...+...|++++|...++...+.. +.+...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHH
Confidence 999999999999999999999999863 3366788899999999999999999999998742 22223222
Q ss_pred ----HHHHHHHhcCChHHHHHHHHHC-CCCCC-H----HHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHH
Q 010642 275 ----CVVDLLGRAGLLDQAYQLITSM-GVKPD-S----TIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLN 344 (505)
Q Consensus 275 ----~li~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 344 (505)
.+...+.+.|++++|.+.++++ ...|+ . ..+..+...+...|++++|...++++.+..|.++..+..+..
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 2366789999999999999988 33444 2 234557788999999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHhCC
Q 010642 345 LYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 345 ~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
.|...|++++|.+.+++..+..
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcC
Confidence 9999999999999999988653
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.4e-18 Score=164.74 Aligned_cols=281 Identities=7% Similarity=-0.017 Sum_probs=139.8
Q ss_pred ChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHH
Q 010642 29 NPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISC 105 (505)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 105 (505)
+...+......+...|++++|.++++.+++.. +.+...+..++..+...|++++|...|+++.+ .+..+|..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 34444555555555555555555555555543 22334444444555555555555555554432 234455555555
Q ss_pred HHHCC-ChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 010642 106 YIRNQ-RTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSL 184 (505)
Q Consensus 106 ~~~~g-~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~ 184 (505)
+...| ++++|...|++... . .+.+...+..+...+...|++++|.+.+..+.+.. +.+...
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~--~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~-------------- 161 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATT--L-EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLP-------------- 161 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHT--T-CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHH--------------
T ss_pred HHHhhhhHHHHHHHHHHHHH--h-CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHH--------------
Confidence 55555 55555555555543 1 12223444455555555555555555555555443 222333
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhc
Q 010642 185 GMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDF 264 (505)
Q Consensus 185 ~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 264 (505)
+..+...|...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+..
T Consensus 162 -----------------~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 162 -----------------MLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp -----------------HHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 4444444444444445554444444431 1123444444445555555555555555444321
Q ss_pred C-------CcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 010642 265 G-------ILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQE 335 (505)
Q Consensus 265 ~-------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 335 (505)
. .+.....+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++.+..|.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 303 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD 303 (330)
T ss_dssp TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC
T ss_pred hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc
Confidence 0 0222345555555555556666665555554 2222 34455555666666666666666666666666666
Q ss_pred CchHHHHHHHH
Q 010642 336 SGDYVLLLNLY 346 (505)
Q Consensus 336 ~~~~~~l~~~~ 346 (505)
+..+..+..++
T Consensus 304 ~~~~~~l~~~~ 314 (330)
T 3hym_B 304 TFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 55565665555
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=6.3e-18 Score=160.12 Aligned_cols=277 Identities=10% Similarity=0.034 Sum_probs=194.5
Q ss_pred cchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC-CHH
Q 010642 4 AYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFE-KSF 82 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~ 82 (505)
.+...|++++|+.+|+++.+... .+...+..++.++...|++++|...++.+++.. +.+..++..+...|...| +++
T Consensus 31 ~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 108 (330)
T 3hym_B 31 RHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNE 108 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHH
Confidence 45678999999999999988643 355677778888999999999999999999876 457888999999999999 999
Q ss_pred HHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHH
Q 010642 83 EACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYI 159 (505)
Q Consensus 83 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~ 159 (505)
+|...|++..+ .+..+|..+...+...|++++|+..|+++... .+.+...+..+...+...|++++|.+.++++
T Consensus 109 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 185 (330)
T 3hym_B 109 HARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL---MKGCHLPMLYIGLEYGLTNNSKLAERFFSQA 185 (330)
T ss_dssp HHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999998754 36788999999999999999999999999872 2334577777888999999999999999999
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH-CCCCCCHHHHH
Q 010642 160 SEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQR-AGVFPDDQTFT 238 (505)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~ 238 (505)
.+.. +.+..++..+...|.+.|++++|...|++..+. ...... .....+..++.
T Consensus 186 l~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------------------~~~~~~~~~~~~~~~~~~ 240 (330)
T 3hym_B 186 LSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK------------------------IKAIGNEVTVDKWEPLLN 240 (330)
T ss_dssp HTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------HTTTSCSCTTTTCCHHHH
T ss_pred HHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH------------------------hhhccccccccHHHHHHH
Confidence 8874 455666666777777777666666666543210 000000 00012234455
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHH
Q 010642 239 GVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGAC 312 (505)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 312 (505)
.+...+...|++++|...+++..+. .+.+...+..+...|.+.|++++|.+.+++. .+.| +...+..+..++
T Consensus 241 ~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 241 NLGHVCRKLKKYAEALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 5555555555555555555555542 1223445555666666666666666666665 4444 344444444444
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.82 E-value=1.6e-18 Score=176.03 Aligned_cols=325 Identities=8% Similarity=-0.037 Sum_probs=254.6
Q ss_pred hhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHH
Q 010642 30 PFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCY 106 (505)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 106 (505)
...+..+...+.+.|++++|...++.+++.. +.+..++..+...|.+.|++++|++.|+++.+ .+..+|..+...+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 4567788889999999999999999999986 56889999999999999999999999998754 4688999999999
Q ss_pred HHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcC------CCCch------------
Q 010642 107 IRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHG------YGSKM------------ 168 (505)
Q Consensus 107 ~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~------~~~~~------------ 168 (505)
...|++++|+..|+.+.. .|+... ..+..+...+....+...+..+.+.. ..|+.
T Consensus 104 ~~~g~~~~A~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSL-----NGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHTCHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHcCCHHHHHHHHHHHhc-----CCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 999999999999974422 233221 12233444455566777776664421 01111
Q ss_pred ------------------hHHHHHHHHHHhc--------CCHHHHHHHHhcCCCCC----------hhHHHHHHHHHHhC
Q 010642 169 ------------------NLCNSLIAMYSKC--------GSLGMAFEVFKGMPEKD----------VVSWSAMISGLAMN 212 (505)
Q Consensus 169 ------------------~~~~~l~~~y~~~--------g~~~~A~~~~~~m~~~~----------~~~~~~li~~~~~~ 212 (505)
.....+...|... |++++|..+|+++.+.+ ..+|..+...+...
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhc
Confidence 1333333333322 47899999999876432 22566777888999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHH
Q 010642 213 GHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQL 292 (505)
Q Consensus 213 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 292 (505)
|++++|...|+++... .|+...+..+...+...|++++|...++++.+. .+.+...+..+...|...|++++|.+.
T Consensus 257 ~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 257 NNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999999984 566788889999999999999999999999874 234577899999999999999999999
Q ss_pred HHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 293 ITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 293 ~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
++++ ...| +...|..+...+...|++++|...++++.+..|.++..+..++..|...|++++|.+.++++.+..
T Consensus 333 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 333 FQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 9988 3334 467888999999999999999999999999999999999999999999999999999999987644
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=2.4e-18 Score=165.90 Aligned_cols=279 Identities=10% Similarity=-0.028 Sum_probs=220.4
Q ss_pred HhCCCHHHHHH-HHhcCCC-----C--ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhcc
Q 010642 76 STFEKSFEACK-LFDEIPQ-----R--DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLG 147 (505)
Q Consensus 76 ~~~g~~~~A~~-~~~~~~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~ 147 (505)
.-.|++++|.. .|++... | +...|..+...+.+.|++++|+..|+++.. . .+.+..++..+..++...|
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~-~p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ--Q-DPKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHH--S-CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--h-CCCCHHHHHHHHHHHHHCc
Confidence 34577888888 7775543 1 356688888999999999999999999877 2 3446678888888899999
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHH---------------HHHHH
Q 010642 148 ALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE--K-DVVSWSA---------------MISGL 209 (505)
Q Consensus 148 ~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~---------------li~~~ 209 (505)
++++|...+..+.+.. +.+..++..+...|...|++++|...|+++.+ | +...+.. .+..+
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 9999999999998875 56788889999999999999999999987642 2 2222221 23334
Q ss_pred HhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHH
Q 010642 210 AMNGHGRDAIESFGAMQRAGVFP-DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQ 288 (505)
Q Consensus 210 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 288 (505)
...|++++|+..|+++....... +..++..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence 48899999999999998753221 4788899999999999999999999999874 23456789999999999999999
Q ss_pred HHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC-----------CchHHHHHHHHHhCCCHHHH
Q 010642 289 AYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQE-----------SGDYVLLLNLYSSVGDWEKV 355 (505)
Q Consensus 289 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a 355 (505)
|.+.++++ ...| +..+|..+...+...|++++|...++++.+..|.+ ..+|..+..+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999998 4444 57789999999999999999999999999988776 67899999999999999999
Q ss_pred HHHHH
Q 010642 356 KELRE 360 (505)
Q Consensus 356 ~~~~~ 360 (505)
..+++
T Consensus 350 ~~~~~ 354 (368)
T 1fch_A 350 GAADA 354 (368)
T ss_dssp HHHHT
T ss_pred HHhHH
Confidence 98876
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=3.5e-18 Score=164.76 Aligned_cols=261 Identities=10% Similarity=-0.073 Sum_probs=212.8
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHH
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSL 174 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 174 (505)
+...|..+...+.+.|++++|+..|+++... .+.+..++..+...+...|++++|...++++.+.. +.+..++..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ---DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 5566888999999999999999999998772 34467888889999999999999999999998875 5668889999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCC-------------hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCHHHHHHH
Q 010642 175 IAMYSKCGSLGMAFEVFKGMPEKD-------------VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVF-PDDQTFTGV 240 (505)
Q Consensus 175 ~~~y~~~g~~~~A~~~~~~m~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~l 240 (505)
..+|.+.|++++|...|+++.+.+ ...+..+...|...|++++|+..|+++.+.... ++..++..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 999999999999999998875321 223344578899999999999999999885332 257889999
Q ss_pred HHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCch
Q 010642 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHV 318 (505)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 318 (505)
...+...|++++|...|+++.+. .+.+...|..+...|.+.|++++|.+.|+++ ...| +..+|..+...+...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 99999999999999999999874 3445778999999999999999999999988 4445 478899999999999999
Q ss_pred hHHHHHHHHHHHhcCC------------CCchHHHHHHHHHhCCCHHHHHHHHHH
Q 010642 319 TLGERVIEHLIELKAQ------------ESGDYVLLLNLYSSVGDWEKVKELREF 361 (505)
Q Consensus 319 ~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 361 (505)
++|...++++.+..|. +...|..|..++...|+.+.+.++.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999998765 356789999999999999999887654
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=1.4e-17 Score=160.51 Aligned_cols=278 Identities=12% Similarity=-0.027 Sum_probs=156.0
Q ss_pred CCcHHHHH-HHHHHHHhCCC---CChhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHH
Q 010642 44 CSLMGGLQ-IHARVLRDGYQ---LDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDAL 116 (505)
Q Consensus 44 ~~~~~a~~-~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 116 (505)
|+++.|.. .+...++.... .+...+..+...|.+.|++++|...|+++.+ .+..+|..+...|.+.|++++|+
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 118 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 118 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 45555555 54444332210 1233455555556666666666666655432 24455666666666666666666
Q ss_pred HHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHH----------------HHHHHHHh
Q 010642 117 CLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCN----------------SLIAMYSK 180 (505)
Q Consensus 117 ~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~----------------~l~~~y~~ 180 (505)
..|+++.. . .+.+..++..+...+...|++++|...+..+.+.. +.+...+. .+...+ .
T Consensus 119 ~~~~~al~--~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 193 (368)
T 1fch_A 119 SALRRCLE--L-KPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLL-S 193 (368)
T ss_dssp HHHHHHHH--H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHH-H
T ss_pred HHHHHHHh--c-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHh-h
Confidence 66666554 1 12345555566666666666666666666665543 22222221 122223 6
Q ss_pred cCCHHHHHHHHhcCC--CC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010642 181 CGSLGMAFEVFKGMP--EK---DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMM 255 (505)
Q Consensus 181 ~g~~~~A~~~~~~m~--~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 255 (505)
.|++++|...|+++. .| +..+|..+...|.+.|++++|+..|+++.... +.+..++..+...+...|++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 666777776666553 12 35566666677777777777777777766542 1234566666677777777777777
Q ss_pred HHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC------------CHHHHHHHHHHHHhcCchhHHH
Q 010642 256 FLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP------------DSTIWRTLLGACRIHKHVTLGE 322 (505)
Q Consensus 256 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p------------~~~~~~~ll~~~~~~g~~~~a~ 322 (505)
.|+++.+. .+.+...+..+...|.+.|++++|.+.|+++ ...| ...+|..+..++...|+.++|.
T Consensus 273 ~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 273 AYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 77776653 1234556666777777777777777777665 1111 1567777777777777777777
Q ss_pred HHHHHHH
Q 010642 323 RVIEHLI 329 (505)
Q Consensus 323 ~~~~~~~ 329 (505)
.++++..
T Consensus 351 ~~~~~~l 357 (368)
T 1fch_A 351 AADARDL 357 (368)
T ss_dssp HHHTTCH
T ss_pred HhHHHHH
Confidence 7766543
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=2.6e-15 Score=150.71 Aligned_cols=337 Identities=12% Similarity=0.029 Sum_probs=278.6
Q ss_pred cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----CC
Q 010642 8 SSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMK----FCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYST----FE 79 (505)
Q Consensus 8 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g 79 (505)
.+++++|+..|++..+.| +...+..+...+.. .++.++|.+.+++..+.| +...+..|..+|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 688999999999998875 56677778888887 889999999999998865 56777788888888 78
Q ss_pred CHHHHHHHHhcCCC-CChhHHHHHHHHHHH----CCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHh----ccChH
Q 010642 80 KSFEACKLFDEIPQ-RDTVAWNVLISCYIR----NQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAH----LGALE 150 (505)
Q Consensus 80 ~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~----~~~~~ 150 (505)
+.++|.+.|++..+ .+..++..|...|.. .+++++|++.|++... .+ +...+..+...+.. .++.+
T Consensus 130 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~---~~~a~~~Lg~~y~~g~g~~~~~~ 204 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE--QG---NVWSCNQLGYMYSRGLGVERNDA 204 (490)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH--CC---CHHHHHHHHHHHhcCCCCCcCHH
Confidence 99999999988765 467788889988988 8899999999999877 43 67778888888877 88999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CChhHHHHHHHHHHh----CCChHHHHHH
Q 010642 151 FGEKIHRYISEHGYGSKMNLCNSLIAMYSK----CGSLGMAFEVFKGMPE-KDVVSWSAMISGLAM----NGHGRDAIES 221 (505)
Q Consensus 151 ~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~ 221 (505)
+|.+.+.+..+.| ++..+..|..+|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+..
T Consensus 205 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~ 281 (490)
T 2xm6_A 205 ISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEW 281 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHH
Confidence 9999999998875 46678888888886 7899999999988654 466777788888887 8999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcC---ChHHHHHHH
Q 010642 222 FGAMQRAGVFPDDQTFTGVLSACSHC-----GLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAG---LLDQAYQLI 293 (505)
Q Consensus 222 ~~~m~~~g~~p~~~t~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~ 293 (505)
|++..+.| +...+..+...+... ++.++|...|++..+. + +...+..|...|.+.| ++++|.++|
T Consensus 282 ~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~ 354 (490)
T 2xm6_A 282 YRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWF 354 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred HHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHH
Confidence 99988764 455666677777776 8999999999998874 3 4456777888888766 789999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHh----CCCHHHHHHHHHHHHhC
Q 010642 294 TSMGVKPDSTIWRTLLGACRI----HKHVTLGERVIEHLIELKAQESGDYVLLLNLYSS----VGDWEKVKELREFMNEK 365 (505)
Q Consensus 294 ~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~ 365 (505)
++.--..+...+..|...+.. .+++++|...+++..+.+ ++..+..|..+|.. .+++++|...|++..+.
T Consensus 355 ~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 355 RKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 988212467888888888888 899999999999988865 46788899999998 89999999999999887
Q ss_pred CC
Q 010642 366 GL 367 (505)
Q Consensus 366 ~~ 367 (505)
+.
T Consensus 433 ~~ 434 (490)
T 2xm6_A 433 DM 434 (490)
T ss_dssp HC
T ss_pred CC
Confidence 64
No 21
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=4.5e-16 Score=144.68 Aligned_cols=268 Identities=8% Similarity=-0.018 Sum_probs=215.2
Q ss_pred HHhCCCHHHHHHHHhcCCCCC----hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChH
Q 010642 75 YSTFEKSFEACKLFDEIPQRD----TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALE 150 (505)
Q Consensus 75 ~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~ 150 (505)
....|++..|+..++.....+ ......+..+|...|++++|+..++. .-+|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~------~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP------SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT------TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc------cCChhHHHHHHHHHHHcCCCcHH
Confidence 456799999999998876543 23456678899999999999876543 24567788888889999999999
Q ss_pred HHHHHHHHHHHcCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 010642 151 FGEKIHRYISEHGY-GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAG 229 (505)
Q Consensus 151 ~a~~i~~~~~~~~~-~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 229 (505)
+|.+.++.+...+. |.+..++..+..+|.+.|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 99999999988764 55677888888999999999999999999 567889999999999999999999999999985
Q ss_pred CCCCHHHH---HHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHH
Q 010642 230 VFPDDQTF---TGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTI 304 (505)
Q Consensus 230 ~~p~~~t~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 304 (505)
.|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|++. ...| +..+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 3654321 12334445569999999999999984 4567788999999999999999999999997 4455 5778
Q ss_pred HHHHHHHHHhcCchhH-HHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHH
Q 010642 305 WRTLLGACRIHKHVTL-GERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKEL 358 (505)
Q Consensus 305 ~~~ll~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 358 (505)
+..++..+...|+.++ +.++++++.+..|.++.+ .+...+.+.++++..-
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHH
Confidence 9999999999999876 678999999999998653 3445555555555443
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=1.4e-18 Score=165.64 Aligned_cols=281 Identities=10% Similarity=0.080 Sum_probs=133.6
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHH
Q 010642 42 KFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDN 121 (505)
Q Consensus 42 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 121 (505)
..|++++|.+.++++ +++.+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 557788899988887 23358999999999999999999999764 5677899999999999999999997777
Q ss_pred chhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhH
Q 010642 122 LNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVS 201 (505)
Q Consensus 122 m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~ 201 (505)
.++ ..+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|++++|...|..+ ..
T Consensus 87 ark----~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n 150 (449)
T 1b89_A 87 ARK----KARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SN 150 (449)
T ss_dssp --------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TC
T ss_pred HHH----hCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hh
Confidence 655 24567888899999999999999888774 467779999999999999999999999988 48
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHH
Q 010642 202 WSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLG 281 (505)
Q Consensus 202 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 281 (505)
|..++.++.+.|++++|.+.++++ .+..||..++.+|...|+++.|......+ ...+.....++..|.
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~l~~lv~~Ye 218 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQ 218 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhhHHHHHHHHH
Confidence 999999999999999999999988 27889999999999999999996544432 223444557888999
Q ss_pred hcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhc--CchhHHHHHHHHHHHhcC-----CCCchHHHHHHHHHhCCCH
Q 010642 282 RAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIH--KHVTLGERVIEHLIELKA-----QESGDYVLLLNLYSSVGDW 352 (505)
Q Consensus 282 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~ 352 (505)
+.|++++|..+++.. +..+ ....|+-|.-++++. ++..+..+.|..-....| .+...|..+...|..-+++
T Consensus 219 k~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~ 298 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY 298 (449)
T ss_dssp HTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred HCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 999999999999887 5554 466777777777654 455556665554433334 4667899999999999999
Q ss_pred HHHHHH
Q 010642 353 EKVKEL 358 (505)
Q Consensus 353 ~~a~~~ 358 (505)
+.|..+
T Consensus 299 d~A~~t 304 (449)
T 1b89_A 299 DNAIIT 304 (449)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988763
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=7.7e-17 Score=155.31 Aligned_cols=224 Identities=14% Similarity=0.077 Sum_probs=132.8
Q ss_pred hhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHH
Q 010642 31 FACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYI 107 (505)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 107 (505)
..+..+...+.+.|++++|...++.+++.. +.+..++..+...|.+.|++++|+..|++..+ .+..+|..+...|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 346666667777777777777777777664 34566677777777777777777777766543 34666777777777
Q ss_pred HCCChhHHHHHHHHchhccCCCCCCH-----------HHHHHHHHHHHhccChHHHHHHHHHHHHcCCCC--chhHHHHH
Q 010642 108 RNQRTRDALCLFDNLNREESGCKPDD-----------VTCLLVLQACAHLGALEFGEKIHRYISEHGYGS--KMNLCNSL 174 (505)
Q Consensus 108 ~~g~~~~A~~~~~~m~~~~~~~~pd~-----------~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~--~~~~~~~l 174 (505)
..|++++|+..|+++.. ..|+. ..+..+...+...|++++|.+.++++.+.. +. +..++..+
T Consensus 145 ~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l 219 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIK----QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGL 219 (365)
T ss_dssp HTTCHHHHHHHHHHHHH----HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHH
T ss_pred ccccHHHHHHHHHHHHH----hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHH
Confidence 77777777777777655 22221 122233555666666666666666666653 22 45566666
Q ss_pred HHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCH
Q 010642 175 IAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP-DDQTFTGVLSACSHCGLV 250 (505)
Q Consensus 175 ~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~ 250 (505)
...|.+.|++++|...|+++. ..+..+|+.+..+|.+.|++++|+..|+++.+. .| +..++..+..+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCH
Confidence 666666666666666666543 234555666666666666666666666665553 22 244555555666666666
Q ss_pred HHHHHHHHHHhh
Q 010642 251 DEGMMFLDRMSK 262 (505)
Q Consensus 251 ~~a~~~~~~~~~ 262 (505)
++|...|+++.+
T Consensus 298 ~~A~~~~~~al~ 309 (365)
T 4eqf_A 298 REAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665554
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=1.8e-16 Score=151.11 Aligned_cols=277 Identities=11% Similarity=0.090 Sum_probs=86.3
Q ss_pred cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHH
Q 010642 8 SSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKL 87 (505)
Q Consensus 8 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 87 (505)
.|+.++|.++++++. ++.+|..+..++.+.|++++|.+.|.+ .+|...|..++..+...|++++|++.
T Consensus 16 ~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 16 IGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 455566666666551 223566666666666666666665533 13445556666666666666666665
Q ss_pred HhcCCC--CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCC
Q 010642 88 FDEIPQ--RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYG 165 (505)
Q Consensus 88 ~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~ 165 (505)
++...+ +++.+.+.++.+|.+.|++.++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 84 l~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 84 LQMARKKARESYVETELIFALAKTNRLAELEEFIN---------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp -------------------------CHHHHTTTTT---------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 544433 234555566666666666666554442 144446666666666666666666666544
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010642 166 SKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACS 245 (505)
Q Consensus 166 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 245 (505)
..|..|++++.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|......+. +.|+. ...++..|.
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad~--l~~lv~~Ye 218 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQ 218 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHHH--HHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHhh--HHHHHHHHH
Confidence 245566666666666666666666552 55666666666666666666644333211 22222 334555566
Q ss_pred ccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHh--cCChHHHHHHHHHC-CCCC------CHHHHHHHHHHHHhcC
Q 010642 246 HCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGR--AGLLDQAYQLITSM-GVKP------DSTIWRTLLGACRIHK 316 (505)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~~-~~~p------~~~~~~~ll~~~~~~g 316 (505)
+.|.+++|..+++..... -+.....|+-|..+|++ .+++.+.++.|..- .++| +...|.-+...|...+
T Consensus 219 k~G~~eEai~lLe~aL~l--e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~ 296 (449)
T 1b89_A 219 DRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYE 296 (449)
T ss_dssp HTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 666666666666655421 12223445555555543 23344444444322 3222 2334555555566666
Q ss_pred chhHHHH
Q 010642 317 HVTLGER 323 (505)
Q Consensus 317 ~~~~a~~ 323 (505)
+++.|..
T Consensus 297 e~d~A~~ 303 (449)
T 1b89_A 297 EYDNAII 303 (449)
T ss_dssp CHHHHHH
T ss_pred hHHHHHH
Confidence 6655543
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=6.1e-17 Score=153.09 Aligned_cols=259 Identities=8% Similarity=-0.055 Sum_probs=190.0
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 010642 97 VAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIA 176 (505)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~ 176 (505)
..|..+...+...|++++|+.+|+++... .+.+..++..+..++...|++++|.+.++++.+.. +.+..++..+..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQA---APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34555566666666666666666666551 22345555666666666666666666666666653 445566666666
Q ss_pred HHHhcCCHHHHHHHHhcCCC---CChhHHHHH--------------HH-HHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 010642 177 MYSKCGSLGMAFEVFKGMPE---KDVVSWSAM--------------IS-GLAMNGHGRDAIESFGAMQRAGVFPDDQTFT 238 (505)
Q Consensus 177 ~y~~~g~~~~A~~~~~~m~~---~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 238 (505)
.|...|++++|...|+++.+ .+...+..+ .. .+...|++++|...++++.+... .+...+.
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 176 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHA 176 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHH
Confidence 66666666666666665432 122222222 22 36778889999999999987532 2677888
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcC
Q 010642 239 GVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHK 316 (505)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 316 (505)
.+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 8999999999999999999999874 2345678889999999999999999999987 3334 5778999999999999
Q ss_pred chhHHHHHHHHHHHhcCC------------CCchHHHHHHHHHhCCCHHHHHHHHHHH
Q 010642 317 HVTLGERVIEHLIELKAQ------------ESGDYVLLLNLYSSVGDWEKVKELREFM 362 (505)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 362 (505)
++++|...++++.+..|. +...+..+..+|.+.|++++|..++++.
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999999888 6778999999999999999999988643
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.73 E-value=4e-14 Score=142.06 Aligned_cols=365 Identities=12% Similarity=0.020 Sum_probs=289.6
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----CCCHHHH
Q 010642 13 EGFYLFEKMRQKRIPTNPFACSFAIKCCMK----FCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYST----FEKSFEA 84 (505)
Q Consensus 13 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A 84 (505)
.++..+....+.| +...+..+...+.. .+++++|...+++..+.| +...+..|..+|.. .++.++|
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 3466666666654 66777778888877 899999999999998875 56788889999998 8999999
Q ss_pred HHHHhcCCC-CChhHHHHHHHHHHH----CCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHh----ccChHHHHHH
Q 010642 85 CKLFDEIPQ-RDTVAWNVLISCYIR----NQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAH----LGALEFGEKI 155 (505)
Q Consensus 85 ~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~----~~~~~~a~~i 155 (505)
.+.|++..+ .+..++..|...|.. .+++++|+..|++... .+ +...+..+...+.. .++.++|.+.
T Consensus 99 ~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~--~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 99 VIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE--QG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH--CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 999998765 477888999999998 8999999999999977 44 56677778888876 7899999999
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhcCC-CCChhHHHHHHHHHHh----CCChHHHHHHHHHHH
Q 010642 156 HRYISEHGYGSKMNLCNSLIAMYSK----CGSLGMAFEVFKGMP-EKDVVSWSAMISGLAM----NGHGRDAIESFGAMQ 226 (505)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~ 226 (505)
+++..+.| ++..+..|..+|.. .+++++|...|++.. ..+..++..+...|.. .+++++|..+|++..
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 250 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSA 250 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 99999875 67788899999998 899999999999865 3467788888888886 889999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhc-----CChHHHHHHHHHCC
Q 010642 227 RAGVFPDDQTFTGVLSACSH----CGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRA-----GLLDQAYQLITSMG 297 (505)
Q Consensus 227 ~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~ 297 (505)
+.| +...+..+...+.. .++.++|..+|++..+. + +...+..|..+|... +++++|.+++++.-
T Consensus 251 ~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~ 323 (490)
T 2xm6_A 251 EQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-G---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA 323 (490)
T ss_dssp TTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-T---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 764 45566666667766 89999999999999864 3 455777888888887 89999999999882
Q ss_pred CCCCHHHHHHHHHHHHhcC---chhHHHHHHHHHHHhcCCCCchHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCC
Q 010642 298 VKPDSTIWRTLLGACRIHK---HVTLGERVIEHLIELKAQESGDYVLLLNLYSS----VGDWEKVKELREFMNEKGLQTT 370 (505)
Q Consensus 298 ~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~ 370 (505)
-..+...+..|...+...| +.++|...+++..+.+ ++..+..|..+|.. .+++++|.+.+++..+.|...
T Consensus 324 ~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~- 400 (490)
T 2xm6_A 324 EQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG--EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSA- 400 (490)
T ss_dssp HTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH-
T ss_pred hcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHH-
Confidence 1235667777877777756 8999999999998874 56789999999999 899999999999998876321
Q ss_pred CceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHH
Q 010642 371 PGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINK 407 (505)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 407 (505)
. ... -+.+ +..|....+..+++...+++...
T Consensus 401 a-~~~---Lg~~--y~~g~g~~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 401 A-QVQ---LGEI--YYYGLGVERDYVQAWAWFDTAST 431 (490)
T ss_dssp H-HHH---HHHH--HHHTSSSCCCHHHHHHHHHHHHH
T ss_pred H-HHH---HHHH--HHcCCCCCCCHHHHHHHHHHHHH
Confidence 1 100 0100 11233345777788877766543
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=1.8e-15 Score=151.04 Aligned_cols=331 Identities=9% Similarity=-0.062 Sum_probs=227.7
Q ss_pred ChhhHHHHHHHHHccCCcHHHHHHHHHHHHh-----C---CCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC-------
Q 010642 29 NPFACSFAIKCCMKFCSLMGGLQIHARVLRD-----G---YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ------- 93 (505)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------- 93 (505)
....|+.+...+...|+.++|++.+++.++. + -+....+|+.+...|...|++++|...|++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3457888888999999999999999988653 1 122456788999999999999999988876531
Q ss_pred ----CChhHHHHHHHHHHHC--CChhHHHHHHHHchhccCCCCCC-HHHHHHHHHH---HHhccChHHHHHHHHHHHHcC
Q 010642 94 ----RDTVAWNVLISCYIRN--QRTRDALCLFDNLNREESGCKPD-DVTCLLVLQA---CAHLGALEFGEKIHRYISEHG 163 (505)
Q Consensus 94 ----~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~~pd-~~t~~~ll~~---~~~~~~~~~a~~i~~~~~~~~ 163 (505)
....+++.+..++.+. +++++|+..|++... +.|+ ...+..+..+ +...++.++|.+.++++++..
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~----~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE----KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 1345677776666654 568999999999877 4454 3444444443 345577788889999888875
Q ss_pred CCCchhHHHHHHHHHHh----cCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HH
Q 010642 164 YGSKMNLCNSLIAMYSK----CGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPD-DQ 235 (505)
Q Consensus 164 ~~~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 235 (505)
+.+..++..+...+.. .|++++|.+.|++.. ..+...+..+...|...|++++|+..|++..+. .|+ ..
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 282 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAY 282 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHH
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHH
Confidence 5566677666665554 457788999998754 456778899999999999999999999999874 444 45
Q ss_pred HHHHHHHHHhc-------------------cCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC
Q 010642 236 TFTGVLSACSH-------------------CGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 236 t~~~ll~~~~~-------------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 296 (505)
++..+..+|.. .+..++|...++...+. .+.+...+..+...|...|++++|.+.|++.
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 55555554432 12356777888877753 2345678889999999999999999999987
Q ss_pred -CCCCCHHH----HHHHHH-HHHhcCchhHHHHHHHHHHHh------------------------cCCCCchHHHHHHHH
Q 010642 297 -GVKPDSTI----WRTLLG-ACRIHKHVTLGERVIEHLIEL------------------------KAQESGDYVLLLNLY 346 (505)
Q Consensus 297 -~~~p~~~~----~~~ll~-~~~~~g~~~~a~~~~~~~~~~------------------------~~~~~~~~~~l~~~~ 346 (505)
...|+... +..+.. .....|++++|+..+++.++. .|.++.+|..|..+|
T Consensus 361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~ 440 (472)
T 4g1t_A 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQ 440 (472)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44454332 222222 234678888888888776544 467788999999999
Q ss_pred HhCCCHHHHHHHHHHHHhCCCC
Q 010642 347 SSVGDWEKVKELREFMNEKGLQ 368 (505)
Q Consensus 347 ~~~g~~~~a~~~~~~m~~~~~~ 368 (505)
...|++++|.+.|++..+.+-.
T Consensus 441 ~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 441 ELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHCC---------------
T ss_pred HHcCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999998876643
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.73 E-value=3.9e-16 Score=147.54 Aligned_cols=260 Identities=12% Similarity=-0.013 Sum_probs=178.7
Q ss_pred ChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHH
Q 010642 29 NPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISC 105 (505)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 105 (505)
+...+......+...|++++|..+++.+++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 34556777888889999999999999998876 45778888888999999999999999987753 467788889999
Q ss_pred HHHCCChhHHHHHHHHchhccCCCCCCH-HHHHHH--------------HH-HHHhccChHHHHHHHHHHHHcCCCCchh
Q 010642 106 YIRNQRTRDALCLFDNLNREESGCKPDD-VTCLLV--------------LQ-ACAHLGALEFGEKIHRYISEHGYGSKMN 169 (505)
Q Consensus 106 ~~~~g~~~~A~~~~~~m~~~~~~~~pd~-~t~~~l--------------l~-~~~~~~~~~~a~~i~~~~~~~~~~~~~~ 169 (505)
|...|++++|+..|+++.. ..|+. ..+..+ .. .+...|++++|...+..+.+.. +.+..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 173 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLL----SQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQ 173 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHH----TSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHH
T ss_pred HHHcCCHHHHHHHHHHHHH----hCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHH
Confidence 9999999999999999876 22332 222222 12 2566777788888888777764 44667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 010642 170 LCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSH 246 (505)
Q Consensus 170 ~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 246 (505)
++..+...|.+.|++++|...|+++. ..+..+|..+...|...|++++|...|+++.+.. +.+..++..+...+..
T Consensus 174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 174 LHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 77777777777777777777777653 2345666777777777777777777777766542 1245566666666777
Q ss_pred cCCHHHHHHHHHHHhhhcCCcC----------CcchHHHHHHHHHhcCChHHHHHHHHH
Q 010642 247 CGLVDEGMMFLDRMSKDFGILP----------NIHHYGCVVDLLGRAGLLDQAYQLITS 295 (505)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~p----------~~~~~~~li~~~~~~g~~~~A~~~~~~ 295 (505)
.|++++|...++++.+...... +...+..+..++.+.|++++|..++++
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 7777777777766654311000 234555555666666666666655544
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=6.1e-16 Score=143.75 Aligned_cols=247 Identities=8% Similarity=0.025 Sum_probs=204.1
Q ss_pred HHHHHHCCChhHHHHHHHHchhccCCCCCCH--HHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 010642 103 ISCYIRNQRTRDALCLFDNLNREESGCKPDD--VTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180 (505)
Q Consensus 103 i~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~--~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~ 180 (505)
|.-....|++.+|+..+++... ..|+. .....+.+++...|+++.|...++. .-+|+..++..+...|..
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~----~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~ 77 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP----SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLAS 77 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC----CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhccc----CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcC
Confidence 4456778999999999988743 55554 3556778999999999999876543 246778889999999999
Q ss_pred cCCHHHHHHHHhcCC----CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010642 181 CGSLGMAFEVFKGMP----EK-DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMM 255 (505)
Q Consensus 181 ~g~~~~A~~~~~~m~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 255 (505)
.|+.++|.+.++++. .| +...+..+...|.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999863 24 566777888999999999999999987 4567788899999999999999999
Q ss_pred HHHHHhhhcCCcCCcch---HHHHHHHHHhcCChHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 010642 256 FLDRMSKDFGILPNIHH---YGCVVDLLGRAGLLDQAYQLITSM--GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIE 330 (505)
Q Consensus 256 ~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 330 (505)
.|+++.+. .|+... ..+++..+...|++++|..+|+++ ..+.+...|+.+..++...|++++|+..++++++
T Consensus 152 ~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 152 ELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999875 355321 123445555669999999999998 3334788999999999999999999999999999
Q ss_pred hcCCCCchHHHHHHHHHhCCCHHH-HHHHHHHHHhCC
Q 010642 331 LKAQESGDYVLLLNLYSSVGDWEK-VKELREFMNEKG 366 (505)
Q Consensus 331 ~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~ 366 (505)
..|.++.++..++..+...|+.++ +.++++++.+..
T Consensus 229 ~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999976 578888887643
No 30
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.71 E-value=2.7e-14 Score=144.79 Aligned_cols=390 Identities=9% Similarity=-0.009 Sum_probs=253.3
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHH-HHhCCCHHH
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDL-YSTFEKSFE 83 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~ 83 (505)
+.+.|++++|..+|+++++.. +-+...|...+..+.+.|+++.|..+|+++++.. |+...|..++.. ....|+.+.
T Consensus 22 ~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~ 98 (530)
T 2ooe_A 22 EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPS 98 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTT
T ss_pred HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhh
Confidence 356789999999999999863 3366788999999999999999999999998764 577778777753 335676666
Q ss_pred HHH----HHhcCC------CCChhHHHHHHHHHHH---------CCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHH-
Q 010642 84 ACK----LFDEIP------QRDTVAWNVLISCYIR---------NQRTRDALCLFDNLNREESGCKPDDVTCLLVLQAC- 143 (505)
Q Consensus 84 A~~----~~~~~~------~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~- 143 (505)
|.+ +|+... .++...|...+....+ .|++++|..+|++... ....+....|.......
T Consensus 99 a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~--~P~~~~~~~~~~~~~~e~ 176 (530)
T 2ooe_A 99 YKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV--NPMINIEQLWRDYNKYEE 176 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT--SCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh--chhhhHHHHHHHHHHHHH
Confidence 554 666542 2356788888776655 6889999999999866 21111123333222111
Q ss_pred ------------HhccChHHHHHHHHHHH------HcC---CCCc--------hhHHHHHHHHHHhc----CCH----HH
Q 010642 144 ------------AHLGALEFGEKIHRYIS------EHG---YGSK--------MNLCNSLIAMYSKC----GSL----GM 186 (505)
Q Consensus 144 ------------~~~~~~~~a~~i~~~~~------~~~---~~~~--------~~~~~~l~~~y~~~----g~~----~~ 186 (505)
...+++..|..++.... +.. ++|+ ...|...+...... ++. ..
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~ 256 (530)
T 2ooe_A 177 GINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKR 256 (530)
T ss_dssp HHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHH
T ss_pred hhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHH
Confidence 12345666666665532 111 2333 23454444333222 222 36
Q ss_pred HHHHHhcCC---CCChhHHHHHHHHHHh-------CCChH-------HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 010642 187 AFEVFKGMP---EKDVVSWSAMISGLAM-------NGHGR-------DAIESFGAMQRAGVFP-DDQTFTGVLSACSHCG 248 (505)
Q Consensus 187 A~~~~~~m~---~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g 248 (505)
|..+|++.. ..+...|..++..+.+ .|+.+ +|..+|++..+. +.| +...+..++..+.+.|
T Consensus 257 a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g 335 (530)
T 2ooe_A 257 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRM 335 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcC
Confidence 667777665 2466778877777765 68876 788888887752 234 4567777788888888
Q ss_pred CHHHHHHHHHHHhhhcCCcCCc--chHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHH-HHhcCchhHHHH
Q 010642 249 LVDEGMMFLDRMSKDFGILPNI--HHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGA-CRIHKHVTLGER 323 (505)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~-~~~~g~~~~a~~ 323 (505)
++++|..+|+++.+. .|+. ..|..++..+.+.|++++|.++|++. ...|+ ...|...... +...|+.+.|..
T Consensus 336 ~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~ 412 (530)
T 2ooe_A 336 KYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 412 (530)
T ss_dssp CHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHH
Confidence 888888888888763 4432 46788888888888888888888887 43343 2222222211 335788888888
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-CCC-CceeEEEECCEEEEEEecCCCCcchHHHHHH
Q 010642 324 VIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGL-QTT-PGCSTIGLKGVVHEFVVDDVSHPRINEIYQM 401 (505)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (505)
+|++.++..|.++..+..++..+.+.|+.++|..+|++....+- .|. ....|..+- .|............+...
T Consensus 413 ~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~----~~e~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 413 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL----AFESNIGDLASILKVEKR 488 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHH----HHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHH----HHHHHcCCHHHHHHHHHH
Confidence 88888888888888888888888888888888888888877642 221 111121000 112223345666677776
Q ss_pred HHHHHH
Q 010642 402 LDEINK 407 (505)
Q Consensus 402 l~~l~~ 407 (505)
..+.+.
T Consensus 489 ~~~~~p 494 (530)
T 2ooe_A 489 RFTAFR 494 (530)
T ss_dssp HHHHTH
T ss_pred HHHHCc
Confidence 666654
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=171.76 Aligned_cols=115 Identities=15% Similarity=0.143 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC-------CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010642 168 MNLCNSLIAMYSKCGSLGMAFEVFKGMP-------EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240 (505)
Q Consensus 168 ~~~~~~l~~~y~~~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 240 (505)
..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4456666666666666666666664432 456666666666666666666666666666666666666666666
Q ss_pred HHHHhccCC-HHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhc
Q 010642 241 LSACSHCGL-VDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRA 283 (505)
Q Consensus 241 l~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 283 (505)
|.++++.|+ .++|.++|++|.+. |+.||..+|++++....+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHH
Confidence 666666665 35566666666665 6666666666666555444
No 32
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=7.3e-14 Score=141.62 Aligned_cols=341 Identities=11% Similarity=0.032 Sum_probs=246.4
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC--CC
Q 010642 18 FEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ--RD 95 (505)
Q Consensus 18 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~ 95 (505)
|++.++.. +-|...|..++.. .+.|++++|..+++.+++.. +.+...|..++..+.+.|++++|..+|++... |+
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~ 78 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH 78 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Confidence 44444443 2367788888884 77899999999999998764 66788999999999999999999999999875 67
Q ss_pred hhHHHHHHH-HHHHCCChhHHHH----HHHHchhccCCCCC-CHHHHHHHHHHHHh---------ccChHHHHHHHHHHH
Q 010642 96 TVAWNVLIS-CYIRNQRTRDALC----LFDNLNREESGCKP-DDVTCLLVLQACAH---------LGALEFGEKIHRYIS 160 (505)
Q Consensus 96 ~~~~~~li~-~~~~~g~~~~A~~----~~~~m~~~~~~~~p-d~~t~~~ll~~~~~---------~~~~~~a~~i~~~~~ 160 (505)
+..|...+. .....|+.++|.+ +|++.... .|..| +...|...+..... .|+++.|..+|++++
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~-~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDK-IGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHH-TTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH-CCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 778888775 3345688777665 77776542 35544 44566666665544 688999999999999
Q ss_pred HcCCCCchhHHHHHHHHH-------------HhcCCHHHHHHHHhc-------CC------CCC--------hhHHHHHH
Q 010642 161 EHGYGSKMNLCNSLIAMY-------------SKCGSLGMAFEVFKG-------MP------EKD--------VVSWSAMI 206 (505)
Q Consensus 161 ~~~~~~~~~~~~~l~~~y-------------~~~g~~~~A~~~~~~-------m~------~~~--------~~~~~~li 206 (505)
+........+|....... .+.++++.|..++.. +. .|+ ...|...+
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~ 237 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYI 237 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHH
T ss_pred hchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHH
Confidence 832111123443332211 134567778776654 11 122 24666665
Q ss_pred HHHHhC----CCh----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-------cCCHH-------HHHHHHHHHhhhc
Q 010642 207 SGLAMN----GHG----RDAIESFGAMQRAGVFPDDQTFTGVLSACSH-------CGLVD-------EGMMFLDRMSKDF 264 (505)
Q Consensus 207 ~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~g~~~-------~a~~~~~~~~~~~ 264 (505)
...... ++. .+|..+|++..... +-+...|......+.+ .|+++ +|..+|++..+
T Consensus 238 ~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~-- 314 (530)
T 2ooe_A 238 QWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS-- 314 (530)
T ss_dssp HHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH--
Confidence 443332 232 47888999988742 2255677777777664 79987 99999999986
Q ss_pred CCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-H-HHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHH
Q 010642 265 GILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-S-TIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYV 340 (505)
Q Consensus 265 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 340 (505)
.+.| +...|..++..+.+.|++++|.++|+++ ...|+ . ..|..++..+.+.|+++.|..+|+++.+..|.+...|.
T Consensus 315 ~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~ 394 (530)
T 2ooe_A 315 TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV 394 (530)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHH
T ss_pred HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHH
Confidence 3345 5778899999999999999999999998 55664 3 58999999999999999999999999998777666666
Q ss_pred HHHHH-HHhCCCHHHHHHHHHHHHhC
Q 010642 341 LLLNL-YSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 341 ~l~~~-~~~~g~~~~a~~~~~~m~~~ 365 (505)
..+.. +...|+.++|..+|++..+.
T Consensus 395 ~~a~~~~~~~~~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 395 TAALMEYYCSKDKSVAFKIFELGLKK 420 (530)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 55444 34699999999999988764
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=4.6e-17 Score=167.17 Aligned_cols=148 Identities=13% Similarity=0.079 Sum_probs=126.7
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHhcCC-------CCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHH
Q 010642 64 DSQLMTTLMDLYSTFEKSFEACKLFDEIP-------QRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTC 136 (505)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~ 136 (505)
-..+||+||++|++.|++++|.++|+.|. .||+++||+||.+|++.|++++|.++|++|.. .|+.||.+||
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~--~G~~PDvvTY 203 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD--AGLTPDLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTCCCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCcHHHH
Confidence 34689999999999999999999997753 58999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHhccCh-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----ChhHHHHHHHHHH
Q 010642 137 LLVLQACAHLGAL-EFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEK-----DVVSWSAMISGLA 210 (505)
Q Consensus 137 ~~ll~~~~~~~~~-~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~ 210 (505)
+++|.++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.+-++.+.+++..+..+ .+.+.+.|...|.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 9999999999985 789999999999999999999999999888877777766665555421 2334445556666
Q ss_pred hCC
Q 010642 211 MNG 213 (505)
Q Consensus 211 ~~g 213 (505)
+.+
T Consensus 284 ~d~ 286 (1134)
T 3spa_A 284 KDG 286 (1134)
T ss_dssp CCS
T ss_pred cCC
Confidence 554
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.2e-14 Score=132.10 Aligned_cols=225 Identities=11% Similarity=-0.020 Sum_probs=147.2
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 010642 97 VAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIA 176 (505)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~ 176 (505)
..|..+...+...|++++|+..|++..+ .. ++..++..+..++...|++++|...+..+.+.. |+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~--~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------- 71 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWE--LH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--REM-------- 71 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHT--------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH--hh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--ccc--------
Confidence 3455555555555555555555555555 22 444555555555555555555555555544431 000
Q ss_pred HHHhcCCHHHHHHHHhcCCCCC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 010642 177 MYSKCGSLGMAFEVFKGMPEKD----VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDE 252 (505)
Q Consensus 177 ~y~~~g~~~~A~~~~~~m~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 252 (505)
.++ ...|..+...|...|++++|+..|++.... .|+. ..+...|++++
T Consensus 72 -------------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~ 123 (258)
T 3uq3_A 72 -------------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEK 123 (258)
T ss_dssp -------------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHH
T ss_pred -------------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHH
Confidence 001 345566666666777777777777776653 3442 23445567777
Q ss_pred HHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 010642 253 GMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIE 330 (505)
Q Consensus 253 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 330 (505)
|...++.+.. ..+.+...+..+...+...|++++|.+.+++. ...| +..+|..+...+...|++++|...++++.+
T Consensus 124 a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 124 ELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7777777765 22334556777777788888888888888777 2233 567788888888888888888888888888
Q ss_pred hcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 331 LKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 331 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
..|.++..+..+...|...|++++|...+++..+.
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 88888888888888888888888888888877653
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.65 E-value=2.6e-13 Score=143.93 Aligned_cols=318 Identities=14% Similarity=0.082 Sum_probs=226.2
Q ss_pred cccchhcCCchHHHHHHHHHHhCCC--CCChhhHHHHHHH---------------------------HHccCCcHHHHHH
Q 010642 2 VRAYSMSSSPEEGFYLFEKMRQKRI--PTNPFACSFAIKC---------------------------CMKFCSLMGGLQI 52 (505)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~---------------------------~~~~~~~~~a~~~ 52 (505)
+.+|..+|.+.+|++++++....+- .-+...-+.++.+ |...|.+++|.++
T Consensus 992 vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~I 1071 (1630)
T 1xi4_A 992 VKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAI 1071 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHH
Confidence 4578899999999999999985421 0122233333332 3344555555555
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC
Q 010642 53 HARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD 132 (505)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd 132 (505)
|++. + ......+.++ -..+++++|.++.++.. +..+|..+..++.+.|++++|++.|.+. -|
T Consensus 1072 YkKa---~--~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--------dD 1133 (1630)
T 1xi4_A 1072 FRKF---D--VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--------DD 1133 (1630)
T ss_pred HHHc---C--CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--------CC
Confidence 5543 1 1111112222 24556666666666553 4677888889999999999999988654 35
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhC
Q 010642 133 DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMN 212 (505)
Q Consensus 133 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 212 (505)
...|..++.+|.+.|+++++.+.+....+.. +++.+.+.++.+|++.+++++...+. ..++...|..+...|...
T Consensus 1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~e 1208 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDE 1208 (1630)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhc
Confidence 6778888889999999999999998877764 44444556888899988888654443 355667777788888899
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHH
Q 010642 213 GHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQL 292 (505)
Q Consensus 213 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 292 (505)
|++++|..+|... ..|..+..++.+.|++++|.+.+++.. +..+|..+..+|...|++..|...
T Consensus 1209 g~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A 1209 KMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred CCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999999998874 368888888999999999988888763 457888888888888888888887
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhC--CCHHHHHHHHH
Q 010642 293 ITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSV--GDWEKVKELRE 360 (505)
Q Consensus 293 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 360 (505)
...+ ..++..+..++..|...|.+++|+.+++..+.+++.+...|.-|...|++- ++..++.+.|.
T Consensus 1273 gl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1273 GLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7653 345566678888899999999999999999888888878887777777654 33444444443
No 36
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.64 E-value=2.7e-13 Score=143.84 Aligned_cols=310 Identities=11% Similarity=0.099 Sum_probs=244.7
Q ss_pred cchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Q 010642 4 AYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFE 83 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 83 (505)
.+...|.+++|..+|++... .....+.++. ..+++++|.++.+++ .++.+|..+..++.+.|++++
T Consensus 1058 Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHH
Confidence 35678999999999998631 1222333333 667899999988755 357899999999999999999
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcC
Q 010642 84 ACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHG 163 (505)
Q Consensus 84 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~ 163 (505)
|+..|.+. .|...|..++..+.+.|++++|.+.|...++ .. +++...+.++.+|++.+++++...+. +
T Consensus 1124 AIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk--~~--~e~~Idt~LafaYAKl~rleele~fI----~-- 1191 (1630)
T 1xi4_A 1124 AIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK--KA--RESYVETELIFALAKTNRLAELEEFI----N-- 1191 (1630)
T ss_pred HHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hc--ccccccHHHHHHHHhhcCHHHHHHHH----h--
Confidence 99999765 6788899999999999999999999998876 33 44333445888999999988654442 2
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010642 164 YGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSA 243 (505)
Q Consensus 164 ~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 243 (505)
.++...+..+.+.|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++. -+..+|..+-.+
T Consensus 1192 -~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1192 -GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 1259 (1630)
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHH
Confidence 345566778999999999999999999986 48999999999999999999999987 366899999999
Q ss_pred HhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhc--Cchh
Q 010642 244 CSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIH--KHVT 319 (505)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~--g~~~ 319 (505)
|...|++..|......+. .++..+..++..|.+.|.+++|..+++.. ++.|. ...|+-|...+.+. ++..
T Consensus 1260 cve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred HhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHH
Confidence 999999999988765432 35667789999999999999999999877 66553 44665566665544 5566
Q ss_pred HHHHHHHHHHHhcC-----CCCchHHHHHHHHHhCCCHHHHHH
Q 010642 320 LGERVIEHLIELKA-----QESGDYVLLLNLYSSVGDWEKVKE 357 (505)
Q Consensus 320 ~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~ 357 (505)
++.+.|..-....+ .+...|.-++..|.+.|+++.|..
T Consensus 1334 Ehlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1334 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 66666665444333 345678999999999999999984
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=9.4e-15 Score=132.85 Aligned_cols=223 Identities=9% Similarity=-0.011 Sum_probs=140.8
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHhcCCC--CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC----HHHHH
Q 010642 64 DSQLMTTLMDLYSTFEKSFEACKLFDEIPQ--RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD----DVTCL 137 (505)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd----~~t~~ 137 (505)
....+..+...|...|++++|...|++..+ .+..+|..+...|...|++++|+..|++.........|+ ..++.
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 346788889999999999999999987643 678899999999999999999999999987621112222 46777
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCC
Q 010642 138 LVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEK---DVVSWSAMISGLAMNGH 214 (505)
Q Consensus 138 ~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~ 214 (505)
.+...+...|++++|...+..+.+.. |+ ...+.+.|++++|...++++... +...|..+...+...|+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 78888888888888888888888764 33 12344445555555555544322 22334444444445555
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHH
Q 010642 215 GRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLIT 294 (505)
Q Consensus 215 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 294 (505)
+++|+..|++..... +.+...+..+...|.+.|++++|.+.++
T Consensus 155 ~~~A~~~~~~a~~~~-------------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-------------------------------------PEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHHC-------------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-------------------------------------cccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 555555554444321 1233444445555555555555555555
Q ss_pred HC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 295 SM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 295 ~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
+. ...| +...|..+...+...|++++|...++++.+..
T Consensus 198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 44 2222 34555556666666666666666666666655
No 38
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.63 E-value=3.9e-14 Score=141.32 Aligned_cols=332 Identities=11% Similarity=-0.025 Sum_probs=217.0
Q ss_pred cchhcCCchHHHHHHHHHHhC-----C--CCC-ChhhHHHHHHHHHccCCcHHHHHHHHHHHHhC------C-CCChhHH
Q 010642 4 AYSMSSSPEEGFYLFEKMRQK-----R--IPT-NPFACSFAIKCCMKFCSLMGGLQIHARVLRDG------Y-QLDSQLM 68 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~-~~~~~~~ 68 (505)
.|...|++++|++.|++..+. + ..| ...+|..+..++...|++++|...++++++.. . .....++
T Consensus 60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~ 139 (472)
T 4g1t_A 60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD 139 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHH
Confidence 355789999999999987642 1 122 34688999999999999999999999887631 1 1234566
Q ss_pred HHHHHHHHh--CCCHHHHHHHHhcCCC---CChhHHHHHHHH---HHHCCChhHHHHHHHHchhccCCCCC-CHHHHHHH
Q 010642 69 TTLMDLYST--FEKSFEACKLFDEIPQ---RDTVAWNVLISC---YIRNQRTRDALCLFDNLNREESGCKP-DDVTCLLV 139 (505)
Q Consensus 69 ~~li~~~~~--~g~~~~A~~~~~~~~~---~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~~~p-d~~t~~~l 139 (505)
..+..++.+ .+++++|+..|++..+ .+...+..+..+ +...++.++|++.|++... +.| +..++..+
T Consensus 140 ~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~----l~p~~~~~~~~l 215 (472)
T 4g1t_A 140 CEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR----LNPDNQYLKVLL 215 (472)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH----HCSSCHHHHHHH
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh----cCCcchHHHHHH
Confidence 655555554 4579999999998753 356666666555 4556888999999998876 334 45556555
Q ss_pred HHHHHh----ccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhC
Q 010642 140 LQACAH----LGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMN 212 (505)
Q Consensus 140 l~~~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~ 212 (505)
...+.. .+++++|.+.++++.+.. +.+..++..+...|.+.|++++|...|++.. ..+..+|..+...|...
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~ 294 (472)
T 4g1t_A 216 ALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAK 294 (472)
T ss_dssp HHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 555544 457789999999998875 6678889999999999999999999999875 23556676666655432
Q ss_pred -------------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCc--c
Q 010642 213 -------------------GHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNI--H 271 (505)
Q Consensus 213 -------------------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~ 271 (505)
+..++|...|++...... .+..++..+...+...|++++|...|++..+. ...|.. .
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~ 372 (472)
T 4g1t_A 295 VFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQL 372 (472)
T ss_dssp HHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHH
Confidence 235677888887776432 23456777888999999999999999998763 222221 1
Q ss_pred hHHHHHH-HHHhcCChHHHHHHHHHC-CC------------------------CC-CHHHHHHHHHHHHhcCchhHHHHH
Q 010642 272 HYGCVVD-LLGRAGLLDQAYQLITSM-GV------------------------KP-DSTIWRTLLGACRIHKHVTLGERV 324 (505)
Q Consensus 272 ~~~~li~-~~~~~g~~~~A~~~~~~~-~~------------------------~p-~~~~~~~ll~~~~~~g~~~~a~~~ 324 (505)
.+..+.. .+...|++++|...|++. .+ .| +..+|..|...+...|++++|++.
T Consensus 373 ~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~ 452 (472)
T 4g1t_A 373 LHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADED 452 (472)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2233332 234678899998888765 22 23 456888899999999999999999
Q ss_pred HHHHHHhcCCCCchHHHH
Q 010642 325 IEHLIELKAQESGDYVLL 342 (505)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l 342 (505)
++++++.+|.+|.++..+
T Consensus 453 y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 453 SERGLESGSLIPSASSWN 470 (472)
T ss_dssp ------------------
T ss_pred HHHHHhcCCCCCcHhhcC
Confidence 999999998777655443
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=2.6e-14 Score=131.40 Aligned_cols=241 Identities=9% Similarity=-0.060 Sum_probs=181.3
Q ss_pred HCCChhHHHHHHHHchhccCCC--C-CCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 010642 108 RNQRTRDALCLFDNLNREESGC--K-PDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSL 184 (505)
Q Consensus 108 ~~g~~~~A~~~~~~m~~~~~~~--~-pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~ 184 (505)
..|++++|+..|+++.. ... + .+..++..+...+...|++++|...+.++.+.. +.+..++..+...|...|++
T Consensus 17 ~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 17 PTLQQEVILARMEQILA--SRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCHHHHHHHHHHHHHHT--SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred ccchHHHHHHHHHHHHh--cccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 35678888888888866 321 1 135567777788888888888888888888775 55677888888888888888
Q ss_pred HHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHh
Q 010642 185 GMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMS 261 (505)
Q Consensus 185 ~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (505)
++|...|++.. ..+...|..+...|.+.|++++|...|+++.+. .|+.......+..+...|++++|...++...
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 88888888765 346778888889999999999999999998874 4555555555556677799999999998887
Q ss_pred hhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 010642 262 KDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-----STIWRTLLGACRIHKHVTLGERVIEHLIELKAQE 335 (505)
Q Consensus 262 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 335 (505)
.. .+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++.+..|.+
T Consensus 172 ~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 172 EK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp HH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred hc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 63 33444444 4777788888889999999887 33332 4678888899999999999999999999998876
Q ss_pred CchHHHHHHHHHhCCCHHHHHHHH
Q 010642 336 SGDYVLLLNLYSSVGDWEKVKELR 359 (505)
Q Consensus 336 ~~~~~~l~~~~~~~g~~~~a~~~~ 359 (505)
...+ ..++...|++++|.+.+
T Consensus 249 ~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHH---HHHHHHHHHHHHC----
T ss_pred HHHH---HHHHHHHHHHHhhHHHH
Confidence 4443 56777888888887765
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.62 E-value=1.9e-14 Score=127.60 Aligned_cols=195 Identities=11% Similarity=-0.022 Sum_probs=139.3
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 010642 165 GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP-DDQTFTGV 240 (505)
Q Consensus 165 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l 240 (505)
|++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+. .| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 44556666677777777777777777776532 35566777777777777777777777777764 33 34566677
Q ss_pred HHHHhcc-----------CCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHHHHHHH
Q 010642 241 LSACSHC-----------GLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDSTIWRTL 308 (505)
Q Consensus 241 l~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 308 (505)
...+... |++++|...+++..+. .+-+...+..+...|...|++++|...|++. .+..+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 7777777 8999999999988863 2234667888888999999999999999887 212678889999
Q ss_pred HHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 309 LGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 309 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
..++...|++++|...++++.+..|.++..+..+..++...|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999887653
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=4.5e-14 Score=129.80 Aligned_cols=243 Identities=11% Similarity=-0.099 Sum_probs=181.1
Q ss_pred cchhcCCchHHHHHHHHHHhCCCC---CChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 010642 4 AYSMSSSPEEGFYLFEKMRQKRIP---TNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEK 80 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 80 (505)
.+...|++++|+..|+++.+.... .+..++..+...+...|++++|...++.+++.. +.+..++..+...|...|+
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccC
Confidence 345678899999999999986422 245678888889999999999999999999886 4578889999999999999
Q ss_pred HHHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHH
Q 010642 81 SFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHR 157 (505)
Q Consensus 81 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~ 157 (505)
+++|.+.|++..+ .+..+|..+...|.+.|++++|+..|+++.. ..|+.......+..+...|++++|...+.
T Consensus 93 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ----DDPNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999988754 4678899999999999999999999999977 44555555555666677799999999998
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-------hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 010642 158 YISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKD-------VVSWSAMISGLAMNGHGRDAIESFGAMQRAGV 230 (505)
Q Consensus 158 ~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 230 (505)
...... +++...+. ++..+...++.++|...+++..+.+ ...|..+...|...|++++|...|++....
T Consensus 169 ~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 244 (275)
T 1xnf_A 169 QHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN-- 244 (275)
T ss_dssp HHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred HHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--
Confidence 887764 44444443 7777778888888888888776543 356677777777777777777777777764
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010642 231 FPDDQTFTGVLSACSHCGLVDEGMMFL 257 (505)
Q Consensus 231 ~p~~~t~~~ll~~~~~~g~~~~a~~~~ 257 (505)
.|+.. .....++...|++++|.+.+
T Consensus 245 ~p~~~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 245 NVHNF--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CCTTC--HHHHHHHHHHHHHHHC----
T ss_pred CchhH--HHHHHHHHHHHHHHhhHHHH
Confidence 34221 12233455556666665544
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.59 E-value=6.9e-14 Score=128.44 Aligned_cols=247 Identities=9% Similarity=-0.001 Sum_probs=142.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC--HHHHHHHHHH
Q 010642 68 MTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD--DVTCLLVLQA 142 (505)
Q Consensus 68 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd--~~t~~~ll~~ 142 (505)
+......+...|++++|+..|++..+ .+..+|..+...|...|++++|+..|++... ....|+ ..+|..+...
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS--KVNATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT--TSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--ccCchhHHHHHHHHHHHH
Confidence 44455566677777777777776543 2455677777777777777777777777755 222222 2336666677
Q ss_pred HHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHH-HHHHhCCChHHH
Q 010642 143 CAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMI-SGLAMNGHGRDA 218 (505)
Q Consensus 143 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li-~~~~~~g~~~~A 218 (505)
+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|++..+ .+...|..+. ..|. .+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHHHH
Confidence 777777777777777777654 44556667777777777777777777766553 2344555555 3333 3466666
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHhccCC---HHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHH
Q 010642 219 IESFGAMQRAGVFPD-DQTFTGVLSACSHCGL---VDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLIT 294 (505)
Q Consensus 219 ~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 294 (505)
.+.|+++.+. .|+ ...+..+...+...|+ .++|...+++..+...-.|+.. -.
T Consensus 162 ~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~-------------------- 218 (272)
T 3u4t_A 162 DSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-KD-------------------- 218 (272)
T ss_dssp HHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-HH--------------------
T ss_pred HHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-hH--------------------
Confidence 6666666553 222 3344444444444444 4445554444443211111110 00
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010642 295 SMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLY 346 (505)
Q Consensus 295 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 346 (505)
....+|..+...+...|++++|...++++.+..|.++.....+....
T Consensus 219 -----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 219 -----ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp -----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred -----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhh
Confidence 00235566667777778888888888888887777766555554443
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.58 E-value=1.2e-13 Score=122.51 Aligned_cols=193 Identities=13% Similarity=0.018 Sum_probs=94.8
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHH
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSL 174 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 174 (505)
+...|..+...+.+.|++++|+..|++..+ --+.+...+..+..++.+.|++++|...++++++.. |.+...+..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALK---ENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 334455555555555555555555555544 122234445555555555555555555555555543 3344555555
Q ss_pred HHHHHhc-----------CCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010642 175 IAMYSKC-----------GSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240 (505)
Q Consensus 175 ~~~y~~~-----------g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 240 (505)
..+|.+. |++++|...|++.. ..+...|..+...|...|++++|+..|++..+.. .+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 5555555 55555555555443 1234455555555555666666666666555544 445555555
Q ss_pred HHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 010642 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITS 295 (505)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 295 (505)
..++...|++++|...|++..+. .+.+...+..+...+.+.|++++|.+.+++
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555666666666666655542 122334455555555555555555555544
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=5e-13 Score=121.19 Aligned_cols=205 Identities=8% Similarity=-0.023 Sum_probs=107.5
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 010642 96 TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLI 175 (505)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~ 175 (505)
...|..+...+...|++++|+..|+++.. . .+.+..++..+...+...|++++|.+.+.++.+.. +.+..++..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALE--I-DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHh--c-CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHH
Confidence 45566666677777777777777776655 1 22345555566666666666666666666665553 33344444444
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHH
Q 010642 176 AMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPD-DQTFTGVLSACSHCGLVDEGM 254 (505)
Q Consensus 176 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~ 254 (505)
..|.+.|++++|...|++ +...+..|+ ...+..+...+...|++++|.
T Consensus 113 ~~~~~~g~~~~A~~~~~~-------------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 161 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLE-------------------------------ASQDTLYPERSRVFENLGLVSLQMKKPAQAK 161 (252)
T ss_dssp HHHHHTTCHHHHHHHHHH-------------------------------HTTCTTCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhHHHHHHHHHHH-------------------------------HHhCccCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 444444444444444444 333112222 233344444444555555555
Q ss_pred HHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 255 MFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 255 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
..++++.+. .+.+...+..+...|...|++++|.+.++++ ...| +...+..+...+...|+.++|.+.++++.+..
T Consensus 162 ~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 162 EYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 555554432 1122344445555555555555555555554 2222 34455555555666666666666666666666
Q ss_pred CCCCc
Q 010642 333 AQESG 337 (505)
Q Consensus 333 ~~~~~ 337 (505)
|.++.
T Consensus 240 p~~~~ 244 (252)
T 2ho1_A 240 PGSLE 244 (252)
T ss_dssp TTSHH
T ss_pred CCCHH
Confidence 55543
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=8.9e-13 Score=116.94 Aligned_cols=196 Identities=8% Similarity=-0.111 Sum_probs=82.7
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhC-C
Q 010642 138 LVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMN-G 213 (505)
Q Consensus 138 ~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~-g 213 (505)
.+...+...|++++|.+.+..+.+.. +.+..++..+...|...|++++|...|+++. ..+..+|..+...|... |
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 91 (225)
T 2vq2_A 13 QLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLN 91 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC
Confidence 33333333444444444443333332 2223333333334444444444444333322 12233444444444444 4
Q ss_pred ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHH
Q 010642 214 HGRDAIESFGAMQRAGVFPD-DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQL 292 (505)
Q Consensus 214 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 292 (505)
++++|...|+++.+.+..|+ ...+..+..++...|++++|...++++.+. .+.+...+..+...+.+.|++++|.+.
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~ 169 (225)
T 2vq2_A 92 RPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYY 169 (225)
T ss_dssp CHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 44555555444444222222 233444444455555555555555554432 111233444444444455555555544
Q ss_pred HHHC-CCC--CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCC
Q 010642 293 ITSM-GVK--PDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQES 336 (505)
Q Consensus 293 ~~~~-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 336 (505)
++++ ... .+...+..+...+...|+.+.+..+++.+.+..|.++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 170 FKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 4444 111 2333444444444555555555555555555554443
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.55 E-value=4.1e-13 Score=129.09 Aligned_cols=246 Identities=10% Similarity=0.046 Sum_probs=200.9
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCC-CHHHHHHHHHHHHhccC-hHHHHHHHHHHHHcCCCCchhHHH
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKP-DDVTCLLVLQACAHLGA-LEFGEKIHRYISEHGYGSKMNLCN 172 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-d~~t~~~ll~~~~~~~~-~~~a~~i~~~~~~~~~~~~~~~~~ 172 (505)
+..+|+.+...+.+.|++++|+..|++... +.| +...|..+..++...|+ +++|...++++++.. +.+..+|+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~----l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~ 170 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIE----LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWH 170 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHH----hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHH
Confidence 356788899999999999999999999987 344 46778888889999996 999999999999986 66788999
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cC
Q 010642 173 SLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSH-CG 248 (505)
Q Consensus 173 ~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g 248 (505)
.+..+|.+.|++++|+..|+++. ..+...|..+..++.+.|++++|+..|+++.+.... +...|+.+..++.. .|
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcC
Confidence 99999999999999999999876 357788999999999999999999999999985433 56788888888888 56
Q ss_pred CHHHH-----HHHHHHHhhhcCCcCCcchHHHHHHHHHhcC--ChHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC----
Q 010642 249 LVDEG-----MMFLDRMSKDFGILPNIHHYGCVVDLLGRAG--LLDQAYQLITSMGVKP-DSTIWRTLLGACRIHK---- 316 (505)
Q Consensus 249 ~~~~a-----~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g---- 316 (505)
..++| +..+++.... .+-+...|..+...|...| ++++|.+.+.++...| +...+..+...+...|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccc
Confidence 65777 4778887763 2234667888888888888 6899999988874455 4667888888888764
Q ss_pred ----c-hhHHHHHHHHH-HHhcCCCCchHHHHHHHHHh
Q 010642 317 ----H-VTLGERVIEHL-IELKAQESGDYVLLLNLYSS 348 (505)
Q Consensus 317 ----~-~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 348 (505)
+ .++|..+++++ .+.+|.....|..+...+..
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 3 58999999999 89999888888877776644
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.55 E-value=1e-12 Score=120.53 Aligned_cols=228 Identities=6% Similarity=-0.126 Sum_probs=184.7
Q ss_pred hhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC--CC----hhHHHHHH
Q 010642 30 PFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ--RD----TVAWNVLI 103 (505)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li 103 (505)
...+......+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++..+ ++ ..+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 4456667788899999999999999999876 44666888899999999999999999987754 22 33589999
Q ss_pred HHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHH-HHHHhcC
Q 010642 104 SCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLI-AMYSKCG 182 (505)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~-~~y~~~g 182 (505)
..|...|++++|+..|++.... .+.+..++..+...+...|++++|...++++.+.. +.+..++..+. ..|. .+
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~ 156 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDR---DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NK 156 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHcccHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HH
Confidence 9999999999999999999872 23456789999999999999999999999998874 56778888888 5555 56
Q ss_pred CHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCC---hHHHHHHHHHHHHCC-CCCCH------HHHHHHHHHHhccCC
Q 010642 183 SLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGH---GRDAIESFGAMQRAG-VFPDD------QTFTGVLSACSHCGL 249 (505)
Q Consensus 183 ~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~------~t~~~ll~~~~~~g~ 249 (505)
++++|...|+++. ..+...|..+...+...|+ +++|...|++..+.. -.|+. ..|..+...|...|+
T Consensus 157 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 157 EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 9999999999875 3356778888888888888 888999999987642 22331 466777788888889
Q ss_pred HHHHHHHHHHHhhh
Q 010642 250 VDEGMMFLDRMSKD 263 (505)
Q Consensus 250 ~~~a~~~~~~~~~~ 263 (505)
+++|...|++..+.
T Consensus 237 ~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 237 KVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999888888763
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=9.9e-13 Score=119.18 Aligned_cols=195 Identities=9% Similarity=-0.095 Sum_probs=157.9
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHH
Q 010642 65 SQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQ 141 (505)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~ 141 (505)
...+..+...|...|++++|...|+++.+ .+..+|..+...|...|++++|++.|+++.. . .+.+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~-~~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA--S-DSRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--H-CcCcHHHHHHHHH
Confidence 57788899999999999999999998753 4778899999999999999999999999977 2 2346788888999
Q ss_pred HHHhccChHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHH
Q 010642 142 ACAHLGALEFGEKIHRYISEHGY-GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRD 217 (505)
Q Consensus 142 ~~~~~~~~~~a~~i~~~~~~~~~-~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~ 217 (505)
.+...|++++|.++++.+.+.+. +.+..++..+...|.+.|++++|...|++.. ..+...|..+...|...|++++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999988322 3356778888888888888888888888764 3356677788888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhh
Q 010642 218 AIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKD 263 (505)
Q Consensus 218 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (505)
|...|+++.+.. +.+...+..+...+...|+.++|.++++++.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888888877642 234556677777777888888888888887764
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=1.5e-13 Score=123.77 Aligned_cols=205 Identities=10% Similarity=0.056 Sum_probs=104.3
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhC
Q 010642 136 CLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMN 212 (505)
Q Consensus 136 ~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~ 212 (505)
+..+...+...|++++|...++++.+.. +.+..++..+...|.+.|++++|...|+++. ..+...|..+...|...
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVK 104 (243)
T ss_dssp ----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHh
Confidence 3333334444444444444444444332 2233444444444444444444444444332 12344455555555556
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHH
Q 010642 213 GHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQL 292 (505)
Q Consensus 213 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 292 (505)
|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|++++|.+.
T Consensus 105 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666555432 123445555566666666666666666666542 122344556666666666666666666
Q ss_pred HHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHH
Q 010642 293 ITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLN 344 (505)
Q Consensus 293 ~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 344 (505)
++++ ...| +..+|..+...+...|++++|...++++.+..|.++..+..+..
T Consensus 182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 6665 2222 45566667777777777777777777777777766655554433
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=1.2e-12 Score=116.03 Aligned_cols=199 Identities=12% Similarity=0.061 Sum_probs=173.3
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010642 165 GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVL 241 (505)
Q Consensus 165 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 241 (505)
+.+..++..+...|...|++++|...|+++. ..+...|..+...|...|++++|.+.|+++.... +.+..++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 4467788999999999999999999999765 3467789999999999999999999999998753 23567888899
Q ss_pred HHHhcc-CCHHHHHHHHHHHhhhcCCcCC-cchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCc
Q 010642 242 SACSHC-GLVDEGMMFLDRMSKDFGILPN-IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKH 317 (505)
Q Consensus 242 ~~~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 317 (505)
..+... |++++|...++++.+. +..|+ ...+..+...+...|++++|.+.++++ ...| +...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 999999 9999999999999872 34443 567888999999999999999999988 3344 47788999999999999
Q ss_pred hhHHHHHHHHHHHhcC-CCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 318 VTLGERVIEHLIELKA-QESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 318 ~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
+++|...++++.+..| .+...+..+...+...|+.+.|..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999999999 88888989999999999999999999998754
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.54 E-value=4.7e-12 Score=116.39 Aligned_cols=224 Identities=10% Similarity=-0.010 Sum_probs=132.4
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHh----ccChHHHHHHHHHHHHcCCCCchhH
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAH----LGALEFGEKIHRYISEHGYGSKMNL 170 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~----~~~~~~a~~i~~~~~~~~~~~~~~~ 170 (505)
+..++..+...|...|++++|+..|++..+ . .+..++..+...+.. .+++++|...+++..+.+ ++..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--L---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--C---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 445555566666666666666666666544 2 233455555555555 666666666666666554 4455
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHhcCCC-CChhHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010642 171 CNSLIAMYSK----CGSLGMAFEVFKGMPE-KDVVSWSAMISGLAM----NGHGRDAIESFGAMQRAGVFPDDQTFTGVL 241 (505)
Q Consensus 171 ~~~l~~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 241 (505)
+..+..+|.. .+++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 5556666666 6666666666655432 244556666666666 666666666666666644 344555555
Q ss_pred HHHhc----cCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHh----cCChHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 010642 242 SACSH----CGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGR----AGLLDQAYQLITSM-GVKPDSTIWRTLLGAC 312 (505)
Q Consensus 242 ~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~ 312 (505)
..+.. .+++++|...|++..+. + +...+..+...|.. .+++++|.+.|++. ...| ...+..+...+
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~ 228 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQ 228 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence 55555 66677777777666653 2 33455556666666 66666666666665 2222 45555566666
Q ss_pred Hh----cCchhHHHHHHHHHHHhcCC
Q 010642 313 RI----HKHVTLGERVIEHLIELKAQ 334 (505)
Q Consensus 313 ~~----~g~~~~a~~~~~~~~~~~~~ 334 (505)
.. .+++++|...+++..+.+|+
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 66 66677777777776666654
No 52
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=1.6e-13 Score=134.12 Aligned_cols=261 Identities=9% Similarity=-0.027 Sum_probs=162.2
Q ss_pred HHHHHHHHCCChhHHHHHHHHchhccCCCCCC-H----HHHHHHHHHHHhccChHHHHHHHHHHHHc----C-CCCchhH
Q 010642 101 VLISCYIRNQRTRDALCLFDNLNREESGCKPD-D----VTCLLVLQACAHLGALEFGEKIHRYISEH----G-YGSKMNL 170 (505)
Q Consensus 101 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~----~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----~-~~~~~~~ 170 (505)
.+...+...|++++|+..|++... . .|+ . ..+..+...+...|++++|...++++.+. + .+....+
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~--~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQ--A--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--H--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHH--h--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 344455555555555555555544 1 222 1 24445555555555555555555554432 1 1123345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCC---------ChhHHHHHHHHHHhCCC-----------------hHHHHHHHHH
Q 010642 171 CNSLIAMYSKCGSLGMAFEVFKGMPEK---------DVVSWSAMISGLAMNGH-----------------GRDAIESFGA 224 (505)
Q Consensus 171 ~~~l~~~y~~~g~~~~A~~~~~~m~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~ 224 (505)
+..+...|...|++++|...|++..+- ...++..+...|...|+ +++|+..+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 555666666666666666666554311 12355666666666666 6677666666
Q ss_pred HHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC----cchHHHHHHHHHhcCChHHHHHHHHH
Q 010642 225 MQRA----GVFP-DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN----IHHYGCVVDLLGRAGLLDQAYQLITS 295 (505)
Q Consensus 225 m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 295 (505)
..+. +-.| ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 5431 1111 1236667777788888888888888877653111111 22677788888888888888888877
Q ss_pred C-CC---CC----CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC------CchHHHHHHHHHhCCCHHHHHHHHHH
Q 010642 296 M-GV---KP----DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQE------SGDYVLLLNLYSSVGDWEKVKELREF 361 (505)
Q Consensus 296 ~-~~---~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 361 (505)
. .. .. ...++..+...+...|++++|...+++..+..+.. ..++..+...|...|++++|.+.+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6 11 11 14567778888999999999999999988764322 33778899999999999999999988
Q ss_pred HHhC
Q 010642 362 MNEK 365 (505)
Q Consensus 362 m~~~ 365 (505)
..+.
T Consensus 369 al~~ 372 (411)
T 4a1s_A 369 HLQL 372 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.52 E-value=5.8e-12 Score=115.75 Aligned_cols=223 Identities=9% Similarity=-0.028 Sum_probs=194.6
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CChhHHHHHH
Q 010642 132 DDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK----CGSLGMAFEVFKGMPE-KDVVSWSAMI 206 (505)
Q Consensus 132 d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li 206 (505)
+..++..+...+...+++++|.+.+++..+. .+...+..+...|.. .|++++|...|++..+ .+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5667888888999999999999999999984 356788889999999 9999999999998753 4778899999
Q ss_pred HHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHhhhcCCcCCcchHHHHHH
Q 010642 207 SGLAM----NGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSH----CGLVDEGMMFLDRMSKDFGILPNIHHYGCVVD 278 (505)
Q Consensus 207 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 278 (505)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 67788888888988 99999999999999874 4 5567778888
Q ss_pred HHHh----cCChHHHHHHHHHC-CCCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHh-
Q 010642 279 LLGR----AGLLDQAYQLITSM-GVKPDSTIWRTLLGACRI----HKHVTLGERVIEHLIELKAQESGDYVLLLNLYSS- 348 (505)
Q Consensus 279 ~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~- 348 (505)
.|.. .+++++|.+.|++. .. .+...+..+...+.. .+++++|...+++..+.++ +..+..|..+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL-KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcC
Confidence 8888 99999999999987 22 356788888889999 9999999999999998876 5688899999999
Q ss_pred ---CCCHHHHHHHHHHHHhCCC
Q 010642 349 ---VGDWEKVKELREFMNEKGL 367 (505)
Q Consensus 349 ---~g~~~~a~~~~~~m~~~~~ 367 (505)
.+++++|.+.+++..+.|.
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999887764
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=3.4e-13 Score=131.32 Aligned_cols=265 Identities=10% Similarity=0.029 Sum_probs=162.9
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC-----HHHHHHHHHHHHhccChHHHHHHHHHHHHc----CCCC
Q 010642 96 TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD-----DVTCLLVLQACAHLGALEFGEKIHRYISEH----GYGS 166 (505)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-----~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----~~~~ 166 (505)
...+..+...+...|++++|+..|++... . .|+ ...+..+...+...|++++|...+.++.+. +.++
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~--~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQ--V--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHh--c--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 33444555555566666666666665554 1 122 134445555555666666666665554432 1111
Q ss_pred -chhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHhCCC--------------------hH
Q 010642 167 -KMNLCNSLIAMYSKCGSLGMAFEVFKGMPE-----KD----VVSWSAMISGLAMNGH--------------------GR 216 (505)
Q Consensus 167 -~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~ 216 (505)
...++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 234555566666666666666666655432 11 2356666666667777 77
Q ss_pred HHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC----cchHHHHHHHHHhcCChH
Q 010642 217 DAIESFGAMQRA----GVFPD-DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN----IHHYGCVVDLLGRAGLLD 287 (505)
Q Consensus 217 ~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~ 287 (505)
+|+..+.+.... +-.|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 777776665431 11111 235666777777888888888888777653111111 236777778888888888
Q ss_pred HHHHHHHHC----CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC------CchHHHHHHHHHhCCCHH
Q 010642 288 QAYQLITSM----GVKPD----STIWRTLLGACRIHKHVTLGERVIEHLIELKAQE------SGDYVLLLNLYSSVGDWE 353 (505)
Q Consensus 288 ~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~ 353 (505)
+|.+.+++. +..++ ..++..+...+...|++++|...+++..+..+.. ..++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 888888776 11112 4467777788888889999988888887764322 346778888888999999
Q ss_pred HHHHHHHHHHh
Q 010642 354 KVKELREFMNE 364 (505)
Q Consensus 354 ~a~~~~~~m~~ 364 (505)
+|.+.+++..+
T Consensus 325 ~A~~~~~~al~ 335 (406)
T 3sf4_A 325 QAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988887654
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.52 E-value=6.5e-13 Score=127.65 Aligned_cols=227 Identities=13% Similarity=0.102 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhcCC---CCChhHHHHHHHH
Q 010642 133 DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGS-LGMAFEVFKGMP---EKDVVSWSAMISG 208 (505)
Q Consensus 133 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~-~~~A~~~~~~m~---~~~~~~~~~li~~ 208 (505)
...|..+..++...|++++|.+.++++++.. +.+..+|+.+..+|.+.|+ +++|+..|++.. ..+...|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3567778888899999999999999999986 6678999999999999997 999999999876 3477899999999
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHh-cCChH
Q 010642 209 LAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGR-AGLLD 287 (505)
Q Consensus 209 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~ 287 (505)
+...|++++|+..|+++.+.... +...|..+..++...|++++|+..++++++. .+-+...|+.+..+|.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999985432 5678899999999999999999999999974 23356788999999999 66668
Q ss_pred HH-----HHHHHHC-CCCC-CHHHHHHHHHHHHhcC--chhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCC--------
Q 010642 288 QA-----YQLITSM-GVKP-DSTIWRTLLGACRIHK--HVTLGERVIEHLIELKAQESGDYVLLLNLYSSVG-------- 350 (505)
Q Consensus 288 ~A-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------- 350 (505)
+| ++.+++. .+.| +...|..+...+...| ++++|...++++ +..|+++..+..|+.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 87 4777776 4556 4678988888888888 689999999998 778888889999999999874
Q ss_pred -CHHHHHHHHHHH-Hh
Q 010642 351 -DWEKVKELREFM-NE 364 (505)
Q Consensus 351 -~~~~a~~~~~~m-~~ 364 (505)
.+++|.++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 358999999987 44
No 56
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.51 E-value=7.6e-13 Score=124.94 Aligned_cols=263 Identities=10% Similarity=0.029 Sum_probs=174.9
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC-----HHHHHHHHHHHHhccChHHHHHHHHHHHHc----CCC-Cch
Q 010642 99 WNVLISCYIRNQRTRDALCLFDNLNREESGCKPD-----DVTCLLVLQACAHLGALEFGEKIHRYISEH----GYG-SKM 168 (505)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-----~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----~~~-~~~ 168 (505)
+......+...|++++|+..|+++.. . .|+ ...+..+...+...|++++|.+.+.++.+. +.+ ...
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~--~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQ--V--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--H--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHh--h--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 34445556666666666666666655 1 222 244555666666666777666666655432 111 124
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHhCCC--------------------hHHHH
Q 010642 169 NLCNSLIAMYSKCGSLGMAFEVFKGMPE-----KD----VVSWSAMISGLAMNGH--------------------GRDAI 219 (505)
Q Consensus 169 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~ 219 (505)
.++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 4566677777777777777777665431 12 2356667777777777 77777
Q ss_pred HHHHHHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC----cchHHHHHHHHHhcCChHHHH
Q 010642 220 ESFGAMQRA----GVFPD-DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN----IHHYGCVVDLLGRAGLLDQAY 290 (505)
Q Consensus 220 ~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~ 290 (505)
..+++.... +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 777765431 11111 245667777888889999998888887653111111 236777888888999999998
Q ss_pred HHHHHC----CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC------CchHHHHHHHHHhCCCHHHHH
Q 010642 291 QLITSM----GVKPD----STIWRTLLGACRIHKHVTLGERVIEHLIELKAQE------SGDYVLLLNLYSSVGDWEKVK 356 (505)
Q Consensus 291 ~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~ 356 (505)
+.+++. +..++ ..++..+...+...|++++|...++++.+..+.. ..++..+...|...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 888876 11112 4567778888999999999999999988765322 336778999999999999999
Q ss_pred HHHHHHHhC
Q 010642 357 ELREFMNEK 365 (505)
Q Consensus 357 ~~~~~m~~~ 365 (505)
..+++..+.
T Consensus 324 ~~~~~a~~~ 332 (338)
T 3ro2_A 324 HFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999988764
No 57
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.51 E-value=6.8e-13 Score=131.31 Aligned_cols=340 Identities=9% Similarity=-0.031 Sum_probs=223.6
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCc---HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC--
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSL---MGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFE-- 79 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 79 (505)
+.+.|++++|+.+|++..+.|. ...+..+...+...|+. ++|...++...+. ++..+..|..++...+
T Consensus 13 ~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 13 ALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHHTC--C
T ss_pred HHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCC
Confidence 4567899999999999988763 33444455555666777 8999999888754 4455666666455554
Q ss_pred ---CHHHHHHHHhcCCCC-ChhHHHHHHHHHHHCCChhH---HHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHH
Q 010642 80 ---KSFEACKLFDEIPQR-DTVAWNVLISCYIRNQRTRD---ALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFG 152 (505)
Q Consensus 80 ---~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a 152 (505)
+.++|...|++..++ +..++..|...|...+..++ +.+.+..... .| +......+...+...+.++.+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g---~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AG---YPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HT---CTTHHHHHHHHHHHHTCGGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CC---CHHHHHHHHHHHHcCCCcccC
Confidence 788999999877653 55678888888888766444 4444444433 22 344556666677666644444
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhcCCC---CChhHHHHHHHHHHhC----CChHHHHHHH
Q 010642 153 EKIHRYISEHGYGSKMNLCNSLIAMYSKCG---SLGMAFEVFKGMPE---KDVVSWSAMISGLAMN----GHGRDAIESF 222 (505)
Q Consensus 153 ~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g---~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~----g~~~~A~~~~ 222 (505)
......+.+.-...++..+..|..+|.+.| +.++|...|++..+ ++...+..+...|... +++++|+..|
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 333222222222334458889999999999 99999999987653 3344446677777554 6899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHH-H--hccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcC-----ChHHHHHHHH
Q 010642 223 GAMQRAGVFPDDQTFTGVLSA-C--SHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAG-----LLDQAYQLIT 294 (505)
Q Consensus 223 ~~m~~~g~~p~~~t~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~ 294 (505)
++.. .| +...+..+... + ...+++++|..+|++..+. | +...+..|..+|. .| ++++|.++|+
T Consensus 241 ~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 241 EKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 9987 33 34455555554 3 5689999999999999874 4 5667777887777 45 9999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHh----CCCHHHHHHHHHHHHhCC
Q 010642 295 SMGVKPDSTIWRTLLGACRI----HKHVTLGERVIEHLIELKAQESGDYVLLLNLYSS----VGDWEKVKELREFMNEKG 366 (505)
Q Consensus 295 ~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 366 (505)
+.- .-+...+..|...|.. ..++++|...+++..+.+ ++.....|..+|.. ..+.++|...++...+.|
T Consensus 312 ~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 312 KAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 987 5577788778777765 348999999999988765 45678888888875 458999999999988877
Q ss_pred CC
Q 010642 367 LQ 368 (505)
Q Consensus 367 ~~ 368 (505)
..
T Consensus 389 ~~ 390 (452)
T 3e4b_A 389 TP 390 (452)
T ss_dssp CH
T ss_pred CH
Confidence 53
No 58
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.50 E-value=4.1e-13 Score=120.82 Aligned_cols=198 Identities=10% Similarity=0.021 Sum_probs=155.7
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010642 166 SKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLS 242 (505)
Q Consensus 166 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 242 (505)
.....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3456778888999999999999999998753 467789999999999999999999999998753 236678888999
Q ss_pred HHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhH
Q 010642 243 ACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTL 320 (505)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 320 (505)
.+...|++++|..+++++.+. .+.+...+..+...+.+.|++++|.+.++++ ...| +...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999874 2346678888999999999999999999988 3333 67788899999999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 321 GERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
|...++++.+..|.++.++..++.+|...|++++|.+.+++..+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999987753
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=4.7e-13 Score=130.34 Aligned_cols=296 Identities=11% Similarity=0.012 Sum_probs=175.7
Q ss_pred CChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhCCCHHHHHHHHhcCCC---------C
Q 010642 28 TNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLD----SQLMTTLMDLYSTFEKSFEACKLFDEIPQ---------R 94 (505)
Q Consensus 28 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~ 94 (505)
+....+......+...|++++|...++.+++.+.. + ..++..+...|...|++++|...|++... .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34455666777788889999999999988887532 3 34677788888888888888888776532 1
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC----HHHHHHHHHHHHhccC--------------------hH
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD----DVTCLLVLQACAHLGA--------------------LE 150 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd----~~t~~~ll~~~~~~~~--------------------~~ 150 (505)
...+|..+...|...|++++|+..+++....... .++ ..++..+...+...|+ ++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE-LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-cccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2456777778888888888888888776541000 011 2355566666666666 66
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC--ChhHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 010642 151 FGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEK--DVVSWSAMISGLAMNGHGRDAIESFGAMQRA 228 (505)
Q Consensus 151 ~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 228 (505)
+|...+....+. +.....+ ...++..+...|...|++++|...|++..+.
T Consensus 165 ~A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 165 AAVDFYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHHHHHHH----------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666665554432 0000000 1123444444444455555555554444321
Q ss_pred CC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC----cchHHHHHHHHHhcCChHHHHHHHHHC---
Q 010642 229 GV-FPD----DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN----IHHYGCVVDLLGRAGLLDQAYQLITSM--- 296 (505)
Q Consensus 229 g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~--- 296 (505)
.. .++ ..++..+...+...|++++|...+++......-.++ ..++..+...|...|++++|.+.+++.
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 00 011 124555555666666666666666655432110011 345566666777777777777766665
Q ss_pred -CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcC------CCCchHHHHHHHHHhCCCHH
Q 010642 297 -GVKPD----STIWRTLLGACRIHKHVTLGERVIEHLIELKA------QESGDYVLLLNLYSSVGDWE 353 (505)
Q Consensus 297 -~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~ 353 (505)
...++ ..++..+...+...|++++|...+++..+..+ ....++..+...|...|+..
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 11112 44667777788888888888888888776531 22346777888888888764
No 60
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.49 E-value=1.5e-12 Score=128.86 Aligned_cols=311 Identities=11% Similarity=0.027 Sum_probs=219.7
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCH---HHHHHHHhcCCCCChhHHHHHHHHHHHCC--
Q 010642 36 AIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKS---FEACKLFDEIPQRDTVAWNVLISCYIRNQ-- 110 (505)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-- 110 (505)
+...+.+.|++++|.+.++.+.+.| +...+..|..+|...|+. ++|...|++..+.+..++..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 4556677899999999999998887 334455666777778888 89999999988778888888888666666
Q ss_pred ---ChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChH---HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--
Q 010642 111 ---RTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALE---FGEKIHRYISEHGYGSKMNLCNSLIAMYSKCG-- 182 (505)
Q Consensus 111 ---~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~---~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g-- 182 (505)
++++|+..|++... .+... .+..+...+...+..+ .+.+.+....+.| ++.....|...|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~--~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFA--NGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp CHHHHHHHHHHHHHHHH--TTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCcCHHHHHHHHHHHHH--CCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 78899999999988 55432 5556666666555433 3455555555555 3567778888888888
Q ss_pred --CHHHHHHHHhcCCCCChhHHHHHHHHHHhCC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----CCHHHH
Q 010642 183 --SLGMAFEVFKGMPEKDVVSWSAMISGLAMNG---HGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHC----GLVDEG 253 (505)
Q Consensus 183 --~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----g~~~~a 253 (505)
..+.|..+++.....++..+..+...|...| +.++|+..|++..+.|. ++...+..+...|... +++++|
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 5666777788877778889999999999999 89999999999998864 4555556666677655 799999
Q ss_pred HHHHHHHhhhcCCcCCcchHHHHHHH-H--HhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----chhHHHHHH
Q 010642 254 MMFLDRMSKDFGILPNIHHYGCVVDL-L--GRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHK-----HVTLGERVI 325 (505)
Q Consensus 254 ~~~~~~~~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~ 325 (505)
..+|++.. +-+...+..|..+ | ...+++++|.++|++.--..+...+..|...|. .| ++++|...|
T Consensus 237 ~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 237 QALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 99999986 2356677777777 4 468999999999998821226777777777776 55 999999999
Q ss_pred HHHHHhcCCCCchHHHHHHHHHh----CCCHHHHHHHHHHHHhCCC
Q 010642 326 EHLIELKAQESGDYVLLLNLYSS----VGDWEKVKELREFMNEKGL 367 (505)
Q Consensus 326 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 367 (505)
++.. +.++..+..|..+|.. ..++++|...|++..+.|.
T Consensus 311 ~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 311 EKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 9988 7778899999999987 3499999999999988775
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.45 E-value=1.1e-12 Score=128.19 Aligned_cols=270 Identities=10% Similarity=0.007 Sum_probs=144.9
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhCCCHHHHHHHHhcCCC---------CChhHHHH
Q 010642 35 FAIKCCMKFCSLMGGLQIHARVLRDGYQLDS----QLMTTLMDLYSTFEKSFEACKLFDEIPQ---------RDTVAWNV 101 (505)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~ 101 (505)
.+...+...|++++|...++.+++.+.. +. .++..+...|...|++++|...|++..+ ....+|..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3444555666666666666666665322 22 3455555666666666666666554421 12334555
Q ss_pred HHHHHHHCCChhHHHHHHHHchhcc--CCCCC-CHHHHHHHHHHHHhccC-----------------hHHHHHHHHHHHH
Q 010642 102 LISCYIRNQRTRDALCLFDNLNREE--SGCKP-DDVTCLLVLQACAHLGA-----------------LEFGEKIHRYISE 161 (505)
Q Consensus 102 li~~~~~~g~~~~A~~~~~~m~~~~--~~~~p-d~~t~~~ll~~~~~~~~-----------------~~~a~~i~~~~~~ 161 (505)
+...|...|++++|+..|++..... .+-.| ...++..+...+...|+ +++|.+.+.+..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 5555666666666665555543310 00001 12234444444444455 4444444443332
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC--ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----H
Q 010642 162 HGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEK--DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGV-FPD----D 234 (505)
Q Consensus 162 ~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~ 234 (505)
.. .....+ ...+|..+...|...|++++|+..|++..+... .++ .
T Consensus 212 ~~----------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (411)
T 4a1s_A 212 LM----------------------------RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAER 263 (411)
T ss_dssp HH----------------------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HH----------------------------HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 10 000000 122455555566666666666666665543210 011 1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcC----CcchHHHHHHHHHhcCChHHHHHHHHHC-------CCCC-CH
Q 010642 235 QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILP----NIHHYGCVVDLLGRAGLLDQAYQLITSM-------GVKP-DS 302 (505)
Q Consensus 235 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~ 302 (505)
.++..+...+...|++++|...+++......-.. ....+..+...|...|++++|.+.+++. +..+ ..
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 343 (411)
T 4a1s_A 264 RANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA 343 (411)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHH
Confidence 2556666677777777777777766654211001 1345667777777788888887777766 1111 13
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 010642 303 TIWRTLLGACRIHKHVTLGERVIEHLIELKA 333 (505)
Q Consensus 303 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 333 (505)
.++..+...+...|++++|...+++..+..+
T Consensus 344 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 344 RACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 4667777888888888888888888887654
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.45 E-value=1.7e-12 Score=122.58 Aligned_cols=268 Identities=10% Similarity=-0.004 Sum_probs=150.5
Q ss_pred hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhCCCHHHHHHHHhcCCC---------CChhH
Q 010642 32 ACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLD----SQLMTTLMDLYSTFEKSFEACKLFDEIPQ---------RDTVA 98 (505)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~ 98 (505)
.+......+...|++++|...++++++.... + ..++..+...|...|++++|...|++..+ ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3444556667778888888888888876422 3 35667777778888888888887776532 12456
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC----HHHHHHHHHHHHhccC--------------------hHHHHH
Q 010642 99 WNVLISCYIRNQRTRDALCLFDNLNREESGCKPD----DVTCLLVLQACAHLGA--------------------LEFGEK 154 (505)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd----~~t~~~ll~~~~~~~~--------------------~~~a~~ 154 (505)
+..+...|...|++++|+..+++....... .++ ..++..+...+...|+ +++|.+
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRE-LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHH-hcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 777777888888888888887776541000 112 2355566666666777 666666
Q ss_pred HHHHHHHc----CC-CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 010642 155 IHRYISEH----GY-GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAG 229 (505)
Q Consensus 155 i~~~~~~~----~~-~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 229 (505)
.+.+..+. +. +....++..+...|...|++++|...|++ ..+..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-------------------------------a~~~~ 213 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ-------------------------------RLLIA 213 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-------------------------------HHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-------------------------------HHHHH
Confidence 66554432 11 11123444455555555555555555443 32210
Q ss_pred C-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC----cchHHHHHHHHHhcCChHHHHHHHHHC----
Q 010642 230 V-FPD----DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN----IHHYGCVVDLLGRAGLLDQAYQLITSM---- 296 (505)
Q Consensus 230 ~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---- 296 (505)
. .++ ..++..+...+...|++++|...+++......-.++ ...+..+...|...|++++|.+.+++.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 214 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 0 001 124444455555555555555555554432100011 334555566666666666666666554
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 297 ---GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 297 ---~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
+..+ ...++..+...+...|++++|...++++.+..
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 1111 13355666677777777777777777776654
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.44 E-value=7.5e-13 Score=131.84 Aligned_cols=207 Identities=7% Similarity=-0.080 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH-HHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHH
Q 010642 150 EFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSL-GMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAM 225 (505)
Q Consensus 150 ~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~-~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 225 (505)
+++.+.+....+.. +.+...+..+...|...|++ ++|+..|++.. ..+...|..+...|.+.|++++|+..|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444433322 33555666666666666666 66666666543 234567777777777778888888888877
Q ss_pred HHCCCCCCHHHHHHHHHHHhcc---------CCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhc--------CChHH
Q 010642 226 QRAGVFPDDQTFTGVLSACSHC---------GLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRA--------GLLDQ 288 (505)
Q Consensus 226 ~~~g~~p~~~t~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~ 288 (505)
.+. .|+...+..+...+... |++++|...|++..+. .+.+...|..+..+|... |++++
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 764 46667777777788887 8888888888888763 233466777888888887 88899
Q ss_pred HHHHHHHC-CCCC----CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHH
Q 010642 289 AYQLITSM-GVKP----DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREF 361 (505)
Q Consensus 289 A~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 361 (505)
|.+.|++. .+.| +...|..+..++...|++++|...++++.+..|.++..+..+..++...|++++|.+.+++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 98888887 4455 6788999999999999999999999999999999988999999999999999999876543
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.44 E-value=1.3e-11 Score=106.00 Aligned_cols=165 Identities=12% Similarity=0.013 Sum_probs=122.7
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHH
Q 010642 198 DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVV 277 (505)
Q Consensus 198 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 277 (505)
+...|..+...|.+.|++++|++.|++..+.... +..++..+..++.+.|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 4456677777777777777777777777664221 4456677777777777777777777777653 223445566666
Q ss_pred HHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHH
Q 010642 278 DLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKV 355 (505)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 355 (505)
..+...++++.|.+.+.+. ...| +...+..+...+...|++++|+..++++.+..|.++.+|..+..+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 7777788888888877776 3333 4667788888888889999999999998888888888888899999999999999
Q ss_pred HHHHHHHHhC
Q 010642 356 KELREFMNEK 365 (505)
Q Consensus 356 ~~~~~~m~~~ 365 (505)
.+.|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9988887654
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.42 E-value=6.7e-11 Score=110.74 Aligned_cols=218 Identities=8% Similarity=-0.017 Sum_probs=137.7
Q ss_pred hHHHHHHHHchhccCCCCCCHHHHHHHHHHHH-------hccCh-------HHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 010642 113 RDALCLFDNLNREESGCKPDDVTCLLVLQACA-------HLGAL-------EFGEKIHRYISEHGYGSKMNLCNSLIAMY 178 (505)
Q Consensus 113 ~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~-------~~~~~-------~~a~~i~~~~~~~~~~~~~~~~~~l~~~y 178 (505)
++|+.+|++... ..+-+...|...+..+. ..|++ ++|..+++++++.-.+.+...|..++..+
T Consensus 33 ~~a~~~~~~al~---~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLL---VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 456666666655 12334445555555443 23554 67777777777631244555677777777
Q ss_pred HhcCCHHHHHHHHhcCCC--C-Chh-HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCCHHHH
Q 010642 179 SKCGSLGMAFEVFKGMPE--K-DVV-SWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSAC-SHCGLVDEG 253 (505)
Q Consensus 179 ~~~g~~~~A~~~~~~m~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~g~~~~a 253 (505)
.+.|++++|..+|++..+ | +.. .|..++..+.+.|++++|..+|++..+... ++...|....... ...|+.++|
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777776542 2 233 677777777777777777777777776432 2333343332221 235778888
Q ss_pred HHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-C---CCC--CHHHHHHHHHHHHhcCchhHHHHHHHH
Q 010642 254 MMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-G---VKP--DSTIWRTLLGACRIHKHVTLGERVIEH 327 (505)
Q Consensus 254 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~ 327 (505)
..+|++..+.. +.+...|..++..+.+.|++++|..+|++. . +.| ....|..++......|+.+.|..++++
T Consensus 189 ~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 189 FKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88887777632 234566777777777778888888777776 2 344 355777777777777888888888888
Q ss_pred HHHhcCCCC
Q 010642 328 LIELKAQES 336 (505)
Q Consensus 328 ~~~~~~~~~ 336 (505)
+.+..|.+.
T Consensus 267 a~~~~p~~~ 275 (308)
T 2ond_A 267 RFTAFREEY 275 (308)
T ss_dssp HHHHTTTTT
T ss_pred HHHHccccc
Confidence 777777654
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.41 E-value=3.5e-12 Score=123.54 Aligned_cols=163 Identities=12% Similarity=0.034 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHHhhhc---CC-cCCcc
Q 010642 201 SWSAMISGLAMNGHGRDAIESFGAMQRAGV-FPD----DQTFTGVLSACSHCGLVDEGMMFLDRMSKDF---GI-LPNIH 271 (505)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~-~p~~~ 271 (505)
+++.+...|...|++++|+..|++..+... .++ ..++..+...|...|++++|...+++..+.. +. +....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 344455555555555555555555442100 011 1245555555566666666666655554410 11 11233
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHC-CC-----CCC-HHHHHHHHHHHHhcCc---hhHHHHHHHHHHHhcCCCCchHHH
Q 010642 272 HYGCVVDLLGRAGLLDQAYQLITSM-GV-----KPD-STIWRTLLGACRIHKH---VTLGERVIEHLIELKAQESGDYVL 341 (505)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~ 341 (505)
++..+...|.+.|++++|.+.+++. .+ .|. ...+..+...+...|+ ++.|..++++. ...+.....+..
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 344 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHH
Confidence 4555556666666666666666554 00 111 1223445555555665 44444444443 111222345666
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHh
Q 010642 342 LLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 342 l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
|...|...|++++|...+++..+
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777777777777776643
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=7.1e-13 Score=123.98 Aligned_cols=168 Identities=11% Similarity=0.007 Sum_probs=99.4
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccC-----CCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHc------C
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREES-----GCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEH------G 163 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~------~ 163 (505)
+..+|..+...|...|++++|+.+|+++..... ..+....++..+...+...|++++|...+.++.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 345677777788888888888888877765100 12223455666677777777777777777776654 2
Q ss_pred C-CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------C----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHC---
Q 010642 164 Y-GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE-------K----DVVSWSAMISGLAMNGHGRDAIESFGAMQRA--- 228 (505)
Q Consensus 164 ~-~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 228 (505)
. +....++..+...|...|++++|...|++..+ + ....+..+...|...|++++|++.|+++...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 22345566667777777777777766665431 1 1234555556666666666666666665542
Q ss_pred ---CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 010642 229 ---GVFPD-DQTFTGVLSACSHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 229 ---g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (505)
+-.|+ ..++..+...+...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11222 23455555556666666666666666554
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=1.6e-10 Score=108.24 Aligned_cols=211 Identities=10% Similarity=0.063 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHH-------hCCCH-------HHHHHHHhcCCC----CChhHHHHHHHHHHH
Q 010642 47 MGGLQIHARVLRDGYQLDSQLMTTLMDLYS-------TFEKS-------FEACKLFDEIPQ----RDTVAWNVLISCYIR 108 (505)
Q Consensus 47 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~----~~~~~~~~li~~~~~ 108 (505)
++|..+|+++++.. +.+..+|..++..+. +.|++ ++|..+|++..+ .+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56778888888764 557778888877765 35775 888888887543 256688888888889
Q ss_pred CCChhHHHHHHHHchhccCCCCCCH-H-HHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH-hcCCHH
Q 010642 109 NQRTRDALCLFDNLNREESGCKPDD-V-TCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYS-KCGSLG 185 (505)
Q Consensus 109 ~g~~~~A~~~~~~m~~~~~~~~pd~-~-t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~-~~g~~~ 185 (505)
.|++++|..+|++..+ +.|+. . .|..+...+.+.|++++|..+|+++++.. +.+..+|...+.... ..|+++
T Consensus 112 ~~~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA----IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT----SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh----ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHH
Confidence 9999999999988866 45543 2 68888888888889999999998888764 445555554444432 368888
Q ss_pred HHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCCHHHHHHHHHH
Q 010642 186 MAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAG-VFPD--DQTFTGVLSACSHCGLVDEGMMFLDR 259 (505)
Q Consensus 186 ~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~ 259 (505)
+|..+|++.. ..+...|..++..+.+.|++++|..+|++..... +.|+ ...|..++....+.|+.+.|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888765 3466788888888888889999999998888763 4553 45677777777888888888888888
Q ss_pred Hhhh
Q 010642 260 MSKD 263 (505)
Q Consensus 260 ~~~~ 263 (505)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.37 E-value=1.4e-11 Score=119.20 Aligned_cols=292 Identities=10% Similarity=0.005 Sum_probs=204.9
Q ss_pred HHccCCcHHHHHHHHHHHHhC--CCCC--hhHHHHHHHHH--HhCCCHHHHH-----------HHHhcCCC-C-Chh---
Q 010642 40 CMKFCSLMGGLQIHARVLRDG--YQLD--SQLMTTLMDLY--STFEKSFEAC-----------KLFDEIPQ-R-DTV--- 97 (505)
Q Consensus 40 ~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~li~~~--~~~g~~~~A~-----------~~~~~~~~-~-~~~--- 97 (505)
+.+.+++++|..+.+.+.+.- ...| ...|-.++..- ...++++.+. +.++.+.. + +..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 346788888988888876532 2223 33334444321 1123333333 44444322 1 111
Q ss_pred ---HHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC----HHHHHHHHHHHHhccChHHHHHHHHHHHHcC--C----
Q 010642 98 ---AWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD----DVTCLLVLQACAHLGALEFGEKIHRYISEHG--Y---- 164 (505)
Q Consensus 98 ---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd----~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~--~---- 164 (505)
.|......+...|++++|+..|++....-.. .+| ..++..+...+...|+++.|...+.++.+.. .
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIF-VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGG-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 1223566788899999999999988651011 122 3577888888999999999999999887641 1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHC----CC-
Q 010642 165 GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE-----KD----VVSWSAMISGLAMNGHGRDAIESFGAMQRA----GV- 230 (505)
Q Consensus 165 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~- 230 (505)
+....+++.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|+..|++..+. +.
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 11245788899999999999999999987652 22 247888999999999999999999998762 23
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhc---CCcCCcchHHHHHHHHHhcCC---hHHHHHHHHHCCCCCC-HH
Q 010642 231 FPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDF---GILPNIHHYGCVVDLLGRAGL---LDQAYQLITSMGVKPD-ST 303 (505)
Q Consensus 231 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~-~~ 303 (505)
.....++..+...+...|++++|...+++..+.. +.+.....+..+...|...|+ +++|..++++.+..|+ ..
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 340 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLED 340 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHH
Confidence 2234678889999999999999999999887531 111222335667788888998 8999999999865554 34
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 304 IWRTLLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 304 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
.+..+...+...|++++|...+++..+..
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 67778899999999999999999988765
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.35 E-value=2.2e-12 Score=120.53 Aligned_cols=248 Identities=12% Similarity=0.035 Sum_probs=156.7
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHhcCCC--------C---ChhHHHHHHHHHHHCCChhHHHHHHHHchhccC----C
Q 010642 64 DSQLMTTLMDLYSTFEKSFEACKLFDEIPQ--------R---DTVAWNVLISCYIRNQRTRDALCLFDNLNREES----G 128 (505)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~ 128 (505)
+..++..+...|...|++++|...|+++.+ . ...++..+...|...|++++|+..|++...... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456788888889999999999999987754 1 345688888999999999999999999876200 1
Q ss_pred CCC-CHHHHHHHHHHHHhccChHHHHHHHHHHHHc------CC-CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC----
Q 010642 129 CKP-DDVTCLLVLQACAHLGALEFGEKIHRYISEH------GY-GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE---- 196 (505)
Q Consensus 129 ~~p-d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~------~~-~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---- 196 (505)
-.| ...++..+...+...|++++|...+.++.+. +. +....++..+...|...|++++|...|++..+
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 122 3467778888899999999999999988865 22 23456788889999999999999998887642
Q ss_pred ---C----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC
Q 010642 197 ---K----DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN 269 (505)
Q Consensus 197 ---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 269 (505)
+ ...++..+...|...|++++|...|+++.+.. |+. .+..+- ....... ..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~-~~~~~~---~~~~~~~----------------~~ 243 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HER-EFGSVD---DENKPIW----------------MH 243 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH-HHC---------CCHH----------------HH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh-cCCCCC---cchHHHH----------------HH
Confidence 1 23467888889999999999999999887631 000 000000 0000000 00
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 010642 270 IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKA 333 (505)
Q Consensus 270 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 333 (505)
...+..+...+...+.+.+|...++.. ...| +..+|..+...+...|++++|...+++..++.|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 011112222333445555555555555 2223 244566667777777777777777777766554
No 71
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.34 E-value=1e-09 Score=105.52 Aligned_cols=262 Identities=13% Similarity=-0.022 Sum_probs=170.5
Q ss_pred HHHHHHHHCCChhHHHHHHHHchhccCCCCCCHH----HHHHHHHHHHhccChHHHHHHHHHHHHcCC---CC--chhHH
Q 010642 101 VLISCYIRNQRTRDALCLFDNLNREESGCKPDDV----TCLLVLQACAHLGALEFGEKIHRYISEHGY---GS--KMNLC 171 (505)
Q Consensus 101 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~----t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~---~~--~~~~~ 171 (505)
.+...+...|++++|...+++... ..-..+.. ++..+...+...|++++|...+.+..+... .+ ...++
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALE--ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--TCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--cCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 344456667777777777777655 22111221 344555666677777777777777665310 11 12335
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC-------C----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC--C--CHHH
Q 010642 172 NSLIAMYSKCGSLGMAFEVFKGMPE-------K----DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVF--P--DDQT 236 (505)
Q Consensus 172 ~~l~~~y~~~g~~~~A~~~~~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t 236 (505)
..+...|...|++++|...|++..+ + ....+..+...+...|++++|...+++....... | ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 6677778888888888877765531 1 1234566777788888888888888887653221 1 2346
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHH-----HHHHHHHhcCChHHHHHHHHHC-CCCCC-----HHHH
Q 010642 237 FTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYG-----CVVDLLGRAGLLDQAYQLITSM-GVKPD-----STIW 305 (505)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~ 305 (505)
+..+...+...|++++|...+++.............+. ..+..+...|++++|...+++. ...|. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 66777788888999999999888765311111111222 2334477889999999999888 22221 3356
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHhcCCC------CchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 306 RTLLGACRIHKHVTLGERVIEHLIELKAQE------SGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 306 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
..+...+...|++++|...+++..+..+.. ...+..+..+|...|+.++|...+++...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 677788888999999999999887654211 12566778889999999999999888754
No 72
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.33 E-value=6.7e-11 Score=101.49 Aligned_cols=160 Identities=10% Similarity=0.033 Sum_probs=90.8
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHH
Q 010642 64 DSQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVL 140 (505)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll 140 (505)
+..+|..|...|.+.|++++|++.|++..+ .+..+|..+...|.+.|++++|+..+..... ..+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV---LDTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCchhHHHHHHHH
Confidence 344455555555555555555555554432 2445555555555556666666655555544 1222334444555
Q ss_pred HHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHH
Q 010642 141 QACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRD 217 (505)
Q Consensus 141 ~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~ 217 (505)
..+...++++.+...+..+.+.. +.+..++..+..+|.+.|++++|.+.|++.. ..+..+|..+..+|.+.|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 55555666666666666655553 4455566666666666666666666666543 2345566666677777777777
Q ss_pred HHHHHHHHHH
Q 010642 218 AIESFGAMQR 227 (505)
Q Consensus 218 A~~~~~~m~~ 227 (505)
|++.|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777777665
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.32 E-value=2.6e-11 Score=120.77 Aligned_cols=211 Identities=11% Similarity=-0.008 Sum_probs=178.5
Q ss_pred CcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCH-HHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHH
Q 010642 45 SLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKS-FEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFD 120 (505)
Q Consensus 45 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 120 (505)
.++++.+.++...... +.+...+..+...|...|++ ++|++.|++..+ .+..+|..+...|.+.|++++|+..|+
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566777777665443 45778888899999999999 999999988753 467899999999999999999999999
Q ss_pred HchhccCCCCCCHHHHHHHHHHHHhc---------cChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc--------CC
Q 010642 121 NLNREESGCKPDDVTCLLVLQACAHL---------GALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKC--------GS 183 (505)
Q Consensus 121 ~m~~~~~~~~pd~~t~~~ll~~~~~~---------~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~--------g~ 183 (505)
+..+ ..|+...+..+...+... |++++|.+.++++++.. +.+...+..+..+|... |+
T Consensus 162 ~al~----~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 162 GALT----HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHT----TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHh----hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 9977 557888888999999999 99999999999999985 66788999999999998 99
Q ss_pred HHHHHHHHhcCCC------CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010642 184 LGMAFEVFKGMPE------KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFL 257 (505)
Q Consensus 184 ~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 257 (505)
+++|...|++..+ .+...|..+..+|...|++++|++.|++..+... -+...+..+...+...|++++|...+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998752 4677899999999999999999999999987532 24567888888999999999999988
Q ss_pred HHHhh
Q 010642 258 DRMSK 262 (505)
Q Consensus 258 ~~~~~ 262 (505)
..+..
T Consensus 316 ~~~~~ 320 (474)
T 4abn_A 316 GKTKP 320 (474)
T ss_dssp TTCCH
T ss_pred ccccC
Confidence 87765
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.31 E-value=6.2e-11 Score=114.49 Aligned_cols=162 Identities=11% Similarity=-0.039 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhc---CCcCCcch
Q 010642 201 SWSAMISGLAMNGHGRDAIESFGAMQRA----GVFP-DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDF---GILPNIHH 272 (505)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~ 272 (505)
+++.+...|...|++++|++.|++..+. +-.+ ...++..+...|...|++++|...+++..... +.+....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 4445555555555555555555554431 1110 11344555556666666666666666555410 11112344
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHC----CC--CCC-HHHHHHHHHHHHhcCc---hhHHHHHHHHHHHhcCCCCchHHHH
Q 010642 273 YGCVVDLLGRAGLLDQAYQLITSM----GV--KPD-STIWRTLLGACRIHKH---VTLGERVIEHLIELKAQESGDYVLL 342 (505)
Q Consensus 273 ~~~li~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l 342 (505)
+..+...|.+.|++++|.+.+++. .. .|. ...+..+...+...++ +.+|...+++.. ..+.....+..+
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~l 342 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHH
Confidence 555666666666666666666655 11 121 2234444444555555 444444444311 112223355567
Q ss_pred HHHHHhCCCHHHHHHHHHHHH
Q 010642 343 LNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 343 ~~~~~~~g~~~~a~~~~~~m~ 363 (505)
...|...|++++|...+++..
T Consensus 343 a~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 777777777777777776654
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.29 E-value=6.1e-11 Score=123.02 Aligned_cols=159 Identities=16% Similarity=0.180 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcC-CcchHHHHH
Q 010642 200 VSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPD-DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILP-NIHHYGCVV 277 (505)
Q Consensus 200 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 277 (505)
.+|+.+...|.+.|++++|++.|++..+. .|+ ..++..+..++.+.|++++|+..|++..+. .| +...|..+.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nLg 84 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 34555555566666666666666665552 333 345556666666666666666666666542 23 345566666
Q ss_pred HHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHH
Q 010642 278 DLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKV 355 (505)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 355 (505)
.+|.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..+++++++.|.++..+..|+.+|...|++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 6666666666666666665 3444 3556777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHH
Q 010642 356 KELREFMN 363 (505)
Q Consensus 356 ~~~~~~m~ 363 (505)
.+.+++..
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766653
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.28 E-value=1.3e-09 Score=105.09 Aligned_cols=303 Identities=9% Similarity=0.043 Sum_probs=206.4
Q ss_pred CCChhhHHHHHHHH--HccCCcHHHHHHHHHHHHhC--CCCC--hhHHHHHHHHH-----HhCCCHH---------HHHH
Q 010642 27 PTNPFACSFAIKCC--MKFCSLMGGLQIHARVLRDG--YQLD--SQLMTTLMDLY-----STFEKSF---------EACK 86 (505)
Q Consensus 27 ~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~li~~~-----~~~g~~~---------~A~~ 86 (505)
.|+...-..+-.-+ ...+++++|.++.+.+.+.. ...| ...|-.|+..- ....... +..+
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 34444444444444 67788999999888876532 2223 33334444321 1111112 3333
Q ss_pred HHhcCCCC--Ch---hHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC----HHHHHHHHHHHHhccChHHHHHHHH
Q 010642 87 LFDEIPQR--DT---VAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD----DVTCLLVLQACAHLGALEFGEKIHR 157 (505)
Q Consensus 87 ~~~~~~~~--~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd----~~t~~~ll~~~~~~~~~~~a~~i~~ 157 (505)
..+....+ +. ..|......+...|++++|+..|++.... ..-.+| ..++..+...+...|+++.|...+.
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKE-LPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-GGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 33332222 11 12334455678899999999999988652 111133 3567788888999999999999998
Q ss_pred HHHHcC--C---C-CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHhCCChHHHHHHH
Q 010642 158 YISEHG--Y---G-SKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE-----KD----VVSWSAMISGLAMNGHGRDAIESF 222 (505)
Q Consensus 158 ~~~~~~--~---~-~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~ 222 (505)
++.+.. . . ....+++.+...|...|++++|...|++..+ ++ ..+++.+...|...|++++|+..|
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 887641 1 1 1245778899999999999999999887642 22 346788899999999999999999
Q ss_pred HHHHH-----CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC---cchHHHHHHHHHhcCC---hHHHHH
Q 010642 223 GAMQR-----AGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN---IHHYGCVVDLLGRAGL---LDQAYQ 291 (505)
Q Consensus 223 ~~m~~-----~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~ 291 (505)
++... .... ...++..+...+.+.|++++|...+++..+...-.++ ...+..+...|...++ +.+|..
T Consensus 246 ~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 246 QKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99876 3322 3567888899999999999999999998875322222 2345556666777888 899999
Q ss_pred HHHHCCCCCCH-HHHHHHHHHHHhcCchhHHHHHHHHHHHh
Q 010642 292 LITSMGVKPDS-TIWRTLLGACRIHKHVTLGERVIEHLIEL 331 (505)
Q Consensus 292 ~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 331 (505)
.+++.+..|+. ..+..+...+...|++++|...+++..+.
T Consensus 325 ~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 325 YFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99987554443 36667888999999999999999998764
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.28 E-value=1.5e-10 Score=98.95 Aligned_cols=162 Identities=12% Similarity=-0.037 Sum_probs=96.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010642 168 MNLCNSLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSAC 244 (505)
Q Consensus 168 ~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 244 (505)
...+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566677777777777777777777653 244556666666677777777777776666532 12344555555555
Q ss_pred hccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHH
Q 010642 245 SHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERV 324 (505)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 324 (505)
...|++++|...++++.+. .+ .+...+..+...+...|++++|...
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~--------------------------------~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NP--------------------------------INFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CT--------------------------------TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--Cc--------------------------------HhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 5666666666666555542 11 2344455555555556666666666
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 325 IEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
++++.+..|.++..+..++..|...|++++|.+.+++..+
T Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666665555555666666666666666666666665543
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.27 E-value=2.3e-09 Score=103.09 Aligned_cols=256 Identities=11% Similarity=-0.013 Sum_probs=123.5
Q ss_pred hhcCCchHHHHHHHHHHhCCCCCChh----hHHHHHHHHHccCCcHHHHHHHHHHHHhCCC-CC----hhHHHHHHHHHH
Q 010642 6 SMSSSPEEGFYLFEKMRQKRIPTNPF----ACSFAIKCCMKFCSLMGGLQIHARVLRDGYQ-LD----SQLMTTLMDLYS 76 (505)
Q Consensus 6 ~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~ 76 (505)
...|++++|+..+++........+.. ++..+...+...|++++|.+.+++.+..... .+ ..++..+...|.
T Consensus 25 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 34566777777776666543222221 3344445555666777766666665543211 11 122344555566
Q ss_pred hCCCHHHHHHHHhcCCC-------C----ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCC--CHHHHHHHHHHH
Q 010642 77 TFEKSFEACKLFDEIPQ-------R----DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKP--DDVTCLLVLQAC 143 (505)
Q Consensus 77 ~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p--d~~t~~~ll~~~ 143 (505)
..|++++|...+++... + ...++..+...+...|++++|...+++.........+ ...++..+...+
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 184 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 184 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence 66666666666654421 1 1233455556666666666666666665431011111 123445555556
Q ss_pred HhccChHHHHHHHHHHHHcCCCCch-hHHH-----HHHHHHHhcCCHHHHHHHHhcCCCCCh-------hHHHHHHHHHH
Q 010642 144 AHLGALEFGEKIHRYISEHGYGSKM-NLCN-----SLIAMYSKCGSLGMAFEVFKGMPEKDV-------VSWSAMISGLA 210 (505)
Q Consensus 144 ~~~~~~~~a~~i~~~~~~~~~~~~~-~~~~-----~l~~~y~~~g~~~~A~~~~~~m~~~~~-------~~~~~li~~~~ 210 (505)
...|++++|...+++..+....++. ..+. ..+..+...|++++|...+++...++. ..+..+...+.
T Consensus 185 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 264 (373)
T 1hz4_A 185 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 264 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHH
Confidence 6666666666666665543111110 0111 222335566666666666665543211 12344445555
Q ss_pred hCCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHh
Q 010642 211 MNGHGRDAIESFGAMQRA----GVFPDD-QTFTGVLSACSHCGLVDEGMMFLDRMS 261 (505)
Q Consensus 211 ~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (505)
..|++++|...+++.... |..++. ..+..+..++...|+.++|...+++..
T Consensus 265 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 265 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 556666665555554321 111111 133333444445555555555554443
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.26 E-value=5.2e-10 Score=95.45 Aligned_cols=159 Identities=11% Similarity=-0.045 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHH
Q 010642 133 DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGL 209 (505)
Q Consensus 133 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~ 209 (505)
...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|+++. ..+...|..+...|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4567778888999999999999999888764 5578889999999999999999999999865 34677899999999
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHH
Q 010642 210 AMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQA 289 (505)
Q Consensus 210 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 289 (505)
...|++++|.+.|+++.... +.+...+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998753 335677778888888888998888888888763 122334444444444444554444
Q ss_pred HHHHHH
Q 010642 290 YQLITS 295 (505)
Q Consensus 290 ~~~~~~ 295 (505)
.+.+++
T Consensus 164 ~~~~~~ 169 (186)
T 3as5_A 164 LPHFKK 169 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.24 E-value=3.9e-10 Score=100.38 Aligned_cols=203 Identities=5% Similarity=-0.052 Sum_probs=152.7
Q ss_pred CCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHH
Q 010642 131 PDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMIS 207 (505)
Q Consensus 131 pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~ 207 (505)
.|+..+......+...|++++|...+..+++...+++..++..+..+|.+.|++++|...|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 466788888889999999999999999999987437777777799999999999999999987653 35567888999
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC---cchHHHH
Q 010642 208 GLAMNGHGRDAIESFGAMQRAGVFPD-D-------QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN---IHHYGCV 276 (505)
Q Consensus 208 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 276 (505)
.|...|++++|+..|++..+. .|+ . ..|..+...+...|++++|...|++..+ ..|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999998874 343 3 3467777788889999999999999875 3444 4567777
Q ss_pred HHHHHhcCChHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010642 277 VDLLGRAGLLDQAYQLITSM-GV-KPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNL 345 (505)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 345 (505)
...|...|+. .++++ .+ ..+...|.... ....+.+++|...+++..+..|.++.+...+...
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 7777655433 23333 11 22344444433 3455778999999999999999987766655443
No 81
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.19 E-value=5e-08 Score=100.10 Aligned_cols=353 Identities=10% Similarity=0.002 Sum_probs=232.4
Q ss_pred chHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC---HHHHHHH
Q 010642 11 PEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEK---SFEACKL 87 (505)
Q Consensus 11 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~ 87 (505)
..+-+..|++.+..+. -|..+|..++..+.+.++++.+..+++.++.. ++.....|...+..-.+.|+ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 4455666777776653 48889999999998889999999999999887 56778889999988888888 9999999
Q ss_pred HhcCCC-----CChhHHHHHHHHHHHCCCh--------hHHHHHHHHchhccCCC-CCC-HHHHHHHHHHHH--------
Q 010642 88 FDEIPQ-----RDTVAWNVLISCYIRNQRT--------RDALCLFDNLNREESGC-KPD-DVTCLLVLQACA-------- 144 (505)
Q Consensus 88 ~~~~~~-----~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~~~~~~-~pd-~~t~~~ll~~~~-------- 144 (505)
|++... +++..|..-+.-..+.++. +...++|+..... .|. .|+ ...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~-vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK-CAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH-TTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-hCcccccchHHHHHHHHHHHhccccCcH
Confidence 998753 6777888877765554443 3344777776542 455 554 345555554332
Q ss_pred -hccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH-------------hcCCHHHHHHHHh------------------
Q 010642 145 -HLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYS-------------KCGSLGMAFEVFK------------------ 192 (505)
Q Consensus 145 -~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~-------------~~g~~~~A~~~~~------------------ 192 (505)
..++++.+.++|.+++......-..+|......-- ...+++.|...+.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 23456777788887775321111222211111000 0011222333322
Q ss_pred -------------------------------------------------cCC---CCChhHHHHHHHHHHhCCChHHHH-
Q 010642 193 -------------------------------------------------GMP---EKDVVSWSAMISGLAMNGHGRDAI- 219 (505)
Q Consensus 193 -------------------------------------------------~m~---~~~~~~~~~li~~~~~~g~~~~A~- 219 (505)
+.. ..+...|-..+.-+.+.|+.++|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 111 112233444444555678888886
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcC--------CcCC------------cchHHHHHHH
Q 010642 220 ESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFG--------ILPN------------IHHYGCVVDL 279 (505)
Q Consensus 220 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--------~~p~------------~~~~~~li~~ 279 (505)
++|++.... .+.+...+...+......|++++|..+|+.+..... -.|+ ...|...+..
T Consensus 365 ~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 899888763 333445566677778888999999999999886310 0132 2368888888
Q ss_pred HHhcCChHHHHHHHHHC-CC--CCCHHHHHHHHHHHHhc-CchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHH
Q 010642 280 LGRAGLLDQAYQLITSM-GV--KPDSTIWRTLLGACRIH-KHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKV 355 (505)
Q Consensus 280 ~~~~g~~~~A~~~~~~~-~~--~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 355 (505)
..+.|.++.|..+|.++ .. .+....|...+..-... ++.+.|..+|+..++..|.++..+...+......|+.+.|
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~A 523 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQV 523 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHH
Confidence 88899999999999988 22 12233443333223333 5589999999999999888888888888888899999999
Q ss_pred HHHHHHHHhCCC
Q 010642 356 KELREFMNEKGL 367 (505)
Q Consensus 356 ~~~~~~m~~~~~ 367 (505)
..+|++......
T Consensus 524 R~lferal~~~~ 535 (679)
T 4e6h_A 524 KSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHTTTSS
T ss_pred HHHHHHHHHhcC
Confidence 999998877654
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.17 E-value=7.5e-10 Score=98.48 Aligned_cols=190 Identities=13% Similarity=0.024 Sum_probs=143.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---C-CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHH
Q 010642 165 GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---E-KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPD-DQTFTG 239 (505)
Q Consensus 165 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ 239 (505)
+.++..+..+...|.+.|++++|...|++.. . ++...+..+..+|...|++++|+..|++..+. .|+ ...+..
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 81 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIG 81 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHH
Confidence 3456788888999999999999999998764 2 67777777888999999999999999998874 444 467788
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhhcCCcCCc-------chHHHHHHHHHhcCChHHHHHHHHHC-CCCCC---HHHHHHH
Q 010642 240 VLSACSHCGLVDEGMMFLDRMSKDFGILPNI-------HHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD---STIWRTL 308 (505)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l 308 (505)
+...+...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.|++. ...|+ ...|..+
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 8888999999999999999988742 2233 45777788888899999999999887 66776 3466666
Q ss_pred HHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 309 LGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 309 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
...+... +...++++....+.+...|..+. ....+.+++|...+++..+.
T Consensus 160 ~~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 160 GVLFYNN-----GADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHH-----HHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 6666443 44556667777665555554433 34556789999999988764
No 83
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.16 E-value=1.9e-08 Score=103.12 Aligned_cols=214 Identities=9% Similarity=-0.047 Sum_probs=161.2
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010642 152 GEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAF-EVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQR 227 (505)
Q Consensus 152 a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~-~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 227 (505)
+..+|++++.. ++.+..+|...+..+.+.|+.++|. .+|++.. ..+...|-..+....+.|++++|.++|+++..
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45567777765 3556777888888888889988996 9998765 24566788888888999999999999999886
Q ss_pred CC---------CCCC------------HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcC-C
Q 010642 228 AG---------VFPD------------DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAG-L 285 (505)
Q Consensus 228 ~g---------~~p~------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~ 285 (505)
.. -.|+ ...|...+....+.|..+.|..+|....+. ...+....|...+..-.+.+ +
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCC
Confidence 31 0142 235777777777889999999999999874 11223344544444444554 5
Q ss_pred hHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCC---CCchHHHHHHHHHhCCCHHHHHHHHH
Q 010642 286 LDQAYQLITSM--GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQ---ESGDYVLLLNLYSSVGDWEKVKELRE 360 (505)
Q Consensus 286 ~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~ 360 (505)
.+.|.++|+.. ...-+...|...+......|+.+.|..+|+++....|+ ....|...+..-.+.|+.+.+.++.+
T Consensus 486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 89999999987 22235667788888888899999999999999988763 34577788888889999999999999
Q ss_pred HHHhCCC
Q 010642 361 FMNEKGL 367 (505)
Q Consensus 361 ~m~~~~~ 367 (505)
++.+.--
T Consensus 566 R~~~~~P 572 (679)
T 4e6h_A 566 RFFEKFP 572 (679)
T ss_dssp HHHHHST
T ss_pred HHHHhCC
Confidence 9987653
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.14 E-value=3.6e-10 Score=103.65 Aligned_cols=131 Identities=11% Similarity=0.011 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHc------CC-CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------C
Q 010642 132 DDVTCLLVLQACAHLGALEFGEKIHRYISEH------GY-GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE-------K 197 (505)
Q Consensus 132 d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~------~~-~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~-------~ 197 (505)
...++..+...+...|++++|...+.++.+. +. +....++..+...|...|++++|...|++..+ +
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 3456677777777888888888887777654 22 22456677788888888888888888776531 1
Q ss_pred ----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 010642 198 ----DVVSWSAMISGLAMNGHGRDAIESFGAMQRA------GVFPD-DQTFTGVLSACSHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 198 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (505)
...+|..+...|...|++++|...|++..+. +-.|+ ..++..+...+...|++++|..++++..+
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2345666777777777777777777776653 11222 34566666677777777777777776664
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.13 E-value=1.3e-09 Score=113.06 Aligned_cols=156 Identities=11% Similarity=0.072 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCC-CHHHHHHHH
Q 010642 65 SQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKP-DDVTCLLVL 140 (505)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-d~~t~~~ll 140 (505)
...++.|...|.+.|++++|++.|++..+ .+..+|+.+..+|.+.|++++|+..|++..+ +.| +...|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~----l~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR----ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHH
Confidence 34445555555555555555555544432 2344455555555555555555555555444 222 234444444
Q ss_pred HHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHH
Q 010642 141 QACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRD 217 (505)
Q Consensus 141 ~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~ 217 (505)
.++...|++++|.+.++++++.. +.+..+++.+..+|.+.|++++|++.|++.. ..+...|..+...|...|++++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 45555555555555555544443 3334444444444444444444444444332 1233344444444444444444
Q ss_pred HHHHHHHH
Q 010642 218 AIESFGAM 225 (505)
Q Consensus 218 A~~~~~~m 225 (505)
|.+.+++.
T Consensus 164 A~~~~~ka 171 (723)
T 4gyw_A 164 YDERMKKL 171 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.06 E-value=1e-09 Score=100.65 Aligned_cols=223 Identities=11% Similarity=-0.035 Sum_probs=159.1
Q ss_pred chhcCCchHHHHHHHHHHhC-------CCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHh------CC-CCChhHHHH
Q 010642 5 YSMSSSPEEGFYLFEKMRQK-------RIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRD------GY-QLDSQLMTT 70 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ 70 (505)
....|++++|+..|++.++. ..+....++..+...+...|++++|...++.+++. +- +....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 44578888888888887662 11224567888889999999999999999998875 22 234567889
Q ss_pred HHHHHHhCCCHHHHHHHHhcCCC----------C-ChhHHHHHHHHHHHCCChhHHHHHHHHchhcc----CCCCC-CHH
Q 010642 71 LMDLYSTFEKSFEACKLFDEIPQ----------R-DTVAWNVLISCYIRNQRTRDALCLFDNLNREE----SGCKP-DDV 134 (505)
Q Consensus 71 li~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~p-d~~ 134 (505)
+...|...|++++|...|++..+ | ...+|..+...|...|++++|+..|++..... .+..| ...
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 99999999999999999987642 1 35678899999999999999999999987610 01133 346
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHc-------CC-CCchhHHHHHHHHHHhcC------CHHHHHHHHhcCCCCC--
Q 010642 135 TCLLVLQACAHLGALEFGEKIHRYISEH-------GY-GSKMNLCNSLIAMYSKCG------SLGMAFEVFKGMPEKD-- 198 (505)
Q Consensus 135 t~~~ll~~~~~~~~~~~a~~i~~~~~~~-------~~-~~~~~~~~~l~~~y~~~g------~~~~A~~~~~~m~~~~-- 198 (505)
++..+...+...|++++|...++++.+. .. +.....+..+...+...+ .+..+...++.....+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH
Confidence 7888899999999999999999988864 11 223334444444444333 3555556666655432
Q ss_pred -hhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010642 199 -VVSWSAMISGLAMNGHGRDAIESFGAMQR 227 (505)
Q Consensus 199 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 227 (505)
..++..+...|...|++++|..+|++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45788899999999999999999998865
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.06 E-value=3.2e-09 Score=98.38 Aligned_cols=186 Identities=9% Similarity=-0.034 Sum_probs=97.8
Q ss_pred HHHhCCCHHHHHHHHhcCCC-------C--ChhHHHHHHHHHHHCCChhHHHHHHHHchhcc--CCCCC-CHHHHHHHHH
Q 010642 74 LYSTFEKSFEACKLFDEIPQ-------R--DTVAWNVLISCYIRNQRTRDALCLFDNLNREE--SGCKP-DDVTCLLVLQ 141 (505)
Q Consensus 74 ~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~p-d~~t~~~ll~ 141 (505)
.|...|++++|...|++..+ + ...+|+.+...|.+.|++++|+..|++..... .|-.+ -..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555555555544321 1 13456666666666666666666666554310 01000 0235666666
Q ss_pred HHHhc-cChHHHHHHHHHHHHcCCC---C--chhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C--Chh------HHHHH
Q 010642 142 ACAHL-GALEFGEKIHRYISEHGYG---S--KMNLCNSLIAMYSKCGSLGMAFEVFKGMPE--K--DVV------SWSAM 205 (505)
Q Consensus 142 ~~~~~-~~~~~a~~i~~~~~~~~~~---~--~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~--~~~------~~~~l 205 (505)
++... |++++|...+++.++.... + ...+++.+...|.+.|++++|...|++..+ | ... .|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 66664 6666666666666553100 0 023566666677777777777776665431 1 111 35555
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHh--ccCCHHHHHHHHHHHh
Q 010642 206 ISGLAMNGHGRDAIESFGAMQRAGVFPDD------QTFTGVLSACS--HCGLVDEGMMFLDRMS 261 (505)
Q Consensus 206 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~~~~--~~g~~~~a~~~~~~~~ 261 (505)
..++...|++++|...|++..+ +.|+. ..+..++.++. ..+++++|...|+.+.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 6666667777777777766654 22221 12334445553 4456677777666554
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=3e-09 Score=98.61 Aligned_cols=175 Identities=9% Similarity=-0.141 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHchhcc--CCCCCC-HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHH
Q 010642 96 TVAWNVLISCYIRNQRTRDALCLFDNLNREE--SGCKPD-DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCN 172 (505)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 172 (505)
...|+.....|...|++++|+..|.+..... .+-+++ ..+|..+..++...|++++|...+++.++..
T Consensus 37 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--------- 107 (292)
T 1qqe_A 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF--------- 107 (292)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------
Confidence 3445555556666666666666666554310 011111 2344555555555555555555555444321
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhC-CChHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHhc
Q 010642 173 SLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMN-GHGRDAIESFGAMQRAGVFP-D----DQTFTGVLSACSH 246 (505)
Q Consensus 173 ~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p-~----~~t~~~ll~~~~~ 246 (505)
...|+...+ ..+|+.+...|... |++++|+..|++..+..... + ..++..+...+..
T Consensus 108 ------~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~ 170 (292)
T 1qqe_A 108 ------THRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL 170 (292)
T ss_dssp ------HHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ------HHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 000110000 12344555555553 55555555555554311000 0 2344555555566
Q ss_pred cCCHHHHHHHHHHHhhhcCCcCCcc-----hHHHHHHHHHhcCChHHHHHHHHHC
Q 010642 247 CGLVDEGMMFLDRMSKDFGILPNIH-----HYGCVVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~p~~~-----~~~~li~~~~~~g~~~~A~~~~~~~ 296 (505)
.|++++|...|++..+...-.+... .|..+..++...|++++|...+++.
T Consensus 171 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 171 DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666666665554211111110 3444555555566666666666555
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.03 E-value=2.5e-08 Score=90.59 Aligned_cols=206 Identities=10% Similarity=-0.003 Sum_probs=138.4
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C---hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC-HHH
Q 010642 165 GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE--K-D---VVSWSAMISGLAMNGHGRDAIESFGAMQRAGV-FPD-DQT 236 (505)
Q Consensus 165 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t 236 (505)
+.+...+..+...+.+.|++++|...|+++.+ | + ...+..+..+|.+.|++++|+..|++..+... .|. ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34556667777778888888888888887653 2 2 45667777778888888888888888776422 122 244
Q ss_pred HHHHHHHHhc--------cCCHHHHHHHHHHHhhhcCCcCC-cchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHH
Q 010642 237 FTGVLSACSH--------CGLVDEGMMFLDRMSKDFGILPN-IHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRT 307 (505)
Q Consensus 237 ~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 307 (505)
+..+..++.. .|++++|...|+++.+.+ |+ ......+....... ..+ ...+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~-------~~~--------~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELR-------AKL--------ARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHH-------HHH--------HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHH-------HHH--------HHHHHH
Confidence 5566666666 778888888888777642 32 22222221111000 000 112456
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHhcCCCC---chHHHHHHHHHhC----------CCHHHHHHHHHHHHhCCCCCCCcee
Q 010642 308 LLGACRIHKHVTLGERVIEHLIELKAQES---GDYVLLLNLYSSV----------GDWEKVKELREFMNEKGLQTTPGCS 374 (505)
Q Consensus 308 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~~ 374 (505)
+...+...|+++.|+..++++++..|.++ ..+..+..+|... |++++|...++++.+..-
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p------- 226 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP------- 226 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-------
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-------
Confidence 77888999999999999999999988754 4788888999876 899999999999876431
Q ss_pred EEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHH
Q 010642 375 TIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKI 411 (505)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 411 (505)
.++...++...+.++...+.+
T Consensus 227 ----------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 ----------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ----------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CChHHHHHHHHHHHHHHHHHH
Confidence 345566777777777666544
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.02 E-value=4.5e-08 Score=89.46 Aligned_cols=237 Identities=8% Similarity=0.010 Sum_probs=143.0
Q ss_pred hCCCHHHHHHHHhcCCCCCh-hHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHH
Q 010642 77 TFEKSFEACKLFDEIPQRDT-VAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKI 155 (505)
Q Consensus 77 ~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i 155 (505)
-.|++..++.-...+...+. ..---+.++|...|++... ..-.|....+..+... ...+ +...
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~-----------~~~~~~~~a~~~la~~-~~~~----a~~~ 88 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ-----------DPTSKLGKVLDLYVQF-LDTK----NIEE 88 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC-----------CSSSTTHHHHHHHHHH-HTTT----CCHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC-----------CCCCHHHHHHHHHHHH-hccc----HHHH
Confidence 45777777665555543222 2222344666666666531 1122333333333322 2222 4555
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 010642 156 HRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE-----KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGV 230 (505)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 230 (505)
+++.++.+ +++..+...+..+|...|++++|++++.+... .+...+..++..|.+.|+.+.|.+.+++|.+ .
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~ 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--A 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 66555544 34445555777777788888888888776632 2445666777788888888888888888876 3
Q ss_pred CC-----CHHHHHHHHHHHh--c--cCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CC--
Q 010642 231 FP-----DDQTFTGVLSACS--H--CGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GV-- 298 (505)
Q Consensus 231 ~p-----~~~t~~~ll~~~~--~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-- 298 (505)
.| +..+...+..++. . .++..+|..+|+++... .|+..+...+..++.+.|++++|.+.++.+ ..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 55 3555555655532 2 33788888888887653 243223334444777888888888888765 21
Q ss_pred --------CC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCc
Q 010642 299 --------KP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESG 337 (505)
Q Consensus 299 --------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 337 (505)
.| |+.+...+|......|+ .|.++++++.+..|.++.
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 24 45566566666666676 788888888888888754
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.01 E-value=4.3e-08 Score=89.58 Aligned_cols=240 Identities=8% Similarity=0.018 Sum_probs=169.4
Q ss_pred HHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 010642 103 ISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCG 182 (505)
Q Consensus 103 i~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g 182 (505)
|+-..-.|++..++.-..++. ...++ .....+.+++...|+++.. ..-.|....+..+.. |...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~----~~~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~ 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFS----KVTDN-TLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSS----CCCCH-HHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT
T ss_pred HHHHHHhhHHHHHHHHHHhcC----ccchH-HHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc
Confidence 344556788888888554442 22222 3444556777777776531 112233334443333 33333
Q ss_pred CHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHH
Q 010642 183 SLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP-DDQTFTGVLSACSHCGLVDEGMMFLD 258 (505)
Q Consensus 183 ~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~ 258 (505)
|...|++.. .++..++..+..++...|++++|++++.+....|..+ +...+..++..+.+.|+++.|.+.++
T Consensus 85 ----a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~ 160 (310)
T 3mv2_B 85 ----NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD 160 (310)
T ss_dssp ----CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777787665 3456666788899999999999999999987765433 44677788899999999999999999
Q ss_pred HHhhhcCCcC-----CcchHHHHHHH--HH--hcCChHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010642 259 RMSKDFGILP-----NIHHYGCVVDL--LG--RAGLLDQAYQLITSM-GVKPDSTIWRTLLGACRIHKHVTLGERVIEHL 328 (505)
Q Consensus 259 ~~~~~~~~~p-----~~~~~~~li~~--~~--~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 328 (505)
.|.+. .| +..+...|..+ .. ..+++.+|..+|+++ ...|+..+-..++.++...|++++|+..++.+
T Consensus 161 ~~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 161 NYTNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99764 45 24555555555 22 234999999999999 55566444445556889999999999999988
Q ss_pred HHh----------cCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 329 IEL----------KAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 329 ~~~----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
.+. +|.++.++..++......|+ +|.++++++.+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 776 47788888888888888887 8899999998754
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.99 E-value=1.1e-08 Score=81.82 Aligned_cols=123 Identities=15% Similarity=0.145 Sum_probs=66.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCc
Q 010642 240 VLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GV-KPDSTIWRTLLGACRIHKH 317 (505)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~ 317 (505)
+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|.+.++++ .. +.+...|..+...+...|+
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC
Confidence 333444444444444444444332 1112333444444444445555555554444 11 1234455556666666666
Q ss_pred hhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 318 VTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 318 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
+++|...++++.+..|.+...+..++..|...|++++|...++++.+
T Consensus 85 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 85 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666666666666666667777777777777777666654
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.99 E-value=9.3e-09 Score=93.48 Aligned_cols=186 Identities=11% Similarity=0.068 Sum_probs=136.2
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C---hh
Q 010642 130 KPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSK---MNLCNSLIAMYSKCGSLGMAFEVFKGMPE--K-D---VV 200 (505)
Q Consensus 130 ~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~---~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~-~---~~ 200 (505)
+.+...+......+...|++++|...|+.+++.. |.+ ..++..+..+|.+.|++++|...|++..+ | + ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456777788888999999999999999999874 334 67888899999999999999999998753 2 1 34
Q ss_pred HHHHHHHHHHh--------CCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcc
Q 010642 201 SWSAMISGLAM--------NGHGRDAIESFGAMQRAGVFPDDQ-TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIH 271 (505)
Q Consensus 201 ~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 271 (505)
.+..+..++.. .|++++|+..|++.... .|+.. .... ...+...... ...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a--------------~~~~~~~~~~-----~~~ 149 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDA--------------TQKIRELRAK-----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHH--------------HHHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHH--------------HHHHHHHHHH-----HHH
Confidence 67778888888 99999999999999875 34431 1111 1111111111 011
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHC-CCCCC----HHHHHHHHHHHHhc----------CchhHHHHHHHHHHHhcCCCC
Q 010642 272 HYGCVVDLLGRAGLLDQAYQLITSM-GVKPD----STIWRTLLGACRIH----------KHVTLGERVIEHLIELKAQES 336 (505)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~~~~~ 336 (505)
.+..+...|.+.|++++|...|+++ ...|+ ...+..+..++... |++++|...++++.+..|.++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 2456677788888888888888877 22333 34666677777755 889999999999999998876
Q ss_pred c
Q 010642 337 G 337 (505)
Q Consensus 337 ~ 337 (505)
.
T Consensus 230 ~ 230 (261)
T 3qky_A 230 L 230 (261)
T ss_dssp H
T ss_pred H
Confidence 4
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.96 E-value=2.4e-08 Score=79.87 Aligned_cols=131 Identities=14% Similarity=0.165 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHH
Q 010642 201 SWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLL 280 (505)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 280 (505)
.|..+...+...|++++|..+|+++.+... .+...+..+...+...|++++|..+++++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 456667777777788888888877766432 24566667777777788888888888877763 233455677777788
Q ss_pred HhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 010642 281 GRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQ 334 (505)
Q Consensus 281 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 334 (505)
...|++++|.+.++++ ...| +...+..+...+...|+++.|...++++.+..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8888888888888776 2223 5667777888888888888888888888877664
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.95 E-value=5.5e-08 Score=86.19 Aligned_cols=183 Identities=9% Similarity=-0.009 Sum_probs=117.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCH-HHHHH
Q 010642 168 MNLCNSLIAMYSKCGSLGMAFEVFKGMPE--KD----VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVF-PDD-QTFTG 239 (505)
Q Consensus 168 ~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~-~t~~~ 239 (505)
...+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++..+.... |.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 44556667778888888888888887652 32 245677778888888888888888888764322 111 13333
Q ss_pred HHHHHhc------------------cCCHHHHHHHHHHHhhhcCCcCCc-chHHHHHHHHHhcCChHHHHHHHHHCCCCC
Q 010642 240 VLSACSH------------------CGLVDEGMMFLDRMSKDFGILPNI-HHYGCVVDLLGRAGLLDQAYQLITSMGVKP 300 (505)
Q Consensus 240 ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 300 (505)
+..++.. .|+.++|...|+++.+. .|+. ..+.++.... ... ...
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~------~~~---- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLK------DRL---- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHH------HHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHH------HHH----
Confidence 4444433 34566666666666542 2222 2221111100 000 000
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCC---chHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 010642 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQES---GDYVLLLNLYSSVGDWEKVKELREFMNEKGLQ 368 (505)
Q Consensus 301 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 368 (505)
......+...+...|+++.|...++++++..|.++ ..+..+..+|.+.|++++|.+.++.+...+..
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00112455678889999999999999999998875 46889999999999999999999998876543
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.92 E-value=3e-09 Score=110.70 Aligned_cols=169 Identities=8% Similarity=-0.088 Sum_probs=95.6
Q ss_pred HhcCCHHHHHHHHhcCC-----------CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 010642 179 SKCGSLGMAFEVFKGMP-----------EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHC 247 (505)
Q Consensus 179 ~~~g~~~~A~~~~~~m~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 247 (505)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|+..|++..+... -+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 45566666666665543 22344556666666666666666666666655321 1344555555666666
Q ss_pred CCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHH
Q 010642 248 GLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVI 325 (505)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 325 (505)
|++++|...|++..+. .+.+...|..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|...+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666666542 12234555566666666666666 6666655 3333 3445666666666666666666666
Q ss_pred HHHHHhcCCCCchHHHHHHHHHhCCC
Q 010642 326 EHLIELKAQESGDYVLLLNLYSSVGD 351 (505)
Q Consensus 326 ~~~~~~~~~~~~~~~~l~~~~~~~g~ 351 (505)
+++.+.+|.+...+..+..+|...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 66666666666666666666555443
No 97
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.89 E-value=4.8e-08 Score=82.89 Aligned_cols=155 Identities=11% Similarity=0.044 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHH-
Q 010642 67 LMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQA- 142 (505)
Q Consensus 67 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~- 142 (505)
....+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++... ..|+..........
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~----~~p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL----EYQDNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG----GGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh----ccCChHHHHHHHHHH
Confidence 344566677888999999999988875 3677888888899999999999999988865 33444333222111
Q ss_pred HHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC---hhHHHHHHHHHHhCCChHH
Q 010642 143 CAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE--KD---VVSWSAMISGLAMNGHGRD 217 (505)
Q Consensus 143 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~~---~~~~~~li~~~~~~g~~~~ 217 (505)
+...+....+...++++++.. |.+...+..+..+|.+.|++++|...|+++.+ |+ ...+..+...|...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 122223334677777777764 55677788888888888888888888877643 22 3467777888888888888
Q ss_pred HHHHHHHHH
Q 010642 218 AIESFGAMQ 226 (505)
Q Consensus 218 A~~~~~~m~ 226 (505)
|...|++..
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.86 E-value=2.4e-09 Score=88.36 Aligned_cols=139 Identities=9% Similarity=-0.051 Sum_probs=88.3
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChH
Q 010642 209 LAMNGHGRDAIESFGAMQRAGVFPD-DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLD 287 (505)
Q Consensus 209 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 287 (505)
+...|++++|+..+...... .|+ ...+..+...|.+.|++++|+..|++..+. .+-+...|..+..+|.+.|+++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchH
Confidence 33445556666666554431 222 223445556666666666666666666642 1224556666667777777777
Q ss_pred HHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHH-HHHHHHhcCCCCchHHHHHHHHHhCCC
Q 010642 288 QAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERV-IEHLIELKAQESGDYVLLLNLYSSVGD 351 (505)
Q Consensus 288 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 351 (505)
+|...|++. .+.| +...|..+...+...|++++|.+. ++++.++.|.++.+|......+...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 777777666 4445 466777777788888887765554 578888888888888877777777664
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.85 E-value=1.1e-07 Score=98.81 Aligned_cols=188 Identities=11% Similarity=-0.036 Sum_probs=146.7
Q ss_pred HhccChHHHHHHHHHHH--------HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhC
Q 010642 144 AHLGALEFGEKIHRYIS--------EHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMN 212 (505)
Q Consensus 144 ~~~~~~~~a~~i~~~~~--------~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~ 212 (505)
...|++++|.+.++++. +.. +.+...+..+..+|.+.|++++|...|++.. ..+...|..+..+|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 77899999999999998 432 5567889999999999999999999999876 34678899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHH
Q 010642 213 GHGRDAIESFGAMQRAGVFP-DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQ 291 (505)
Q Consensus 213 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 291 (505)
|++++|+..|++..+. .| +...+..+..++.+.|++++ ...|++..+. .+.+...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999885 34 45778889999999999999 9999999863 23356788899999999999999999
Q ss_pred HHHHC-CCCCC-HHHHHHHHHHHHhcCc-----hhHHHHHHHHHHHhcCCCCc
Q 010642 292 LITSM-GVKPD-STIWRTLLGACRIHKH-----VTLGERVIEHLIELKAQESG 337 (505)
Q Consensus 292 ~~~~~-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~ 337 (505)
.|++. ...|+ ...|..+..++...++ .+...+..+.+.+..+.++.
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 99998 77786 4567777777666554 23333444444444433333
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.84 E-value=7.1e-08 Score=89.01 Aligned_cols=172 Identities=6% Similarity=-0.042 Sum_probs=124.1
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcC
Q 010642 187 AFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP-DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFG 265 (505)
Q Consensus 187 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 265 (505)
....+......+...+..+...+.+.|++++|...|++.... .| +...+..+...+...|++++|...++++...
T Consensus 105 l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-- 180 (287)
T 3qou_A 105 IRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-- 180 (287)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--
Confidence 333333333344455666777777888888888888887764 33 4456777777888888888888888877653
Q ss_pred CcCCcchHHH-HHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC--CchHH
Q 010642 266 ILPNIHHYGC-VVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQE--SGDYV 340 (505)
Q Consensus 266 ~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~ 340 (505)
.|+...... ....+.+.++.++|.+.+++. ...| +...+..+...+...|++++|...++++.+..|.+ ...+.
T Consensus 181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 344332222 223356677778888888776 3344 56788888888999999999999999999998877 67888
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHH
Q 010642 341 LLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 341 ~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
.|+..|...|+.++|...+++-.
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999888877643
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.84 E-value=6.7e-08 Score=84.46 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=10.7
Q ss_pred HHHHHHCCChhHHHHHHHHchh
Q 010642 103 ISCYIRNQRTRDALCLFDNLNR 124 (505)
Q Consensus 103 i~~~~~~g~~~~A~~~~~~m~~ 124 (505)
...+...|++++|+..|++...
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~ 32 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIA 32 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 3344445555555555555443
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.83 E-value=9.6e-08 Score=83.48 Aligned_cols=180 Identities=6% Similarity=-0.075 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCC
Q 010642 135 TCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGH 214 (505)
Q Consensus 135 t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 214 (505)
.+......+...|++++|...+.++++.. |.+...+... ..... .......++.+...|.+.|+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~-----~~~~~----------~~~~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWT-----NVDKN----------SEISSKLATELALAYKKNRN 69 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHH-----HSCTT----------SHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHh-----hhcch----------hhhhHHHHHHHHHHHHHCCC
Confidence 33444556677888888888888888764 2333344330 00000 00011122335556666666
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCC--hHHHHHH
Q 010642 215 GRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGL--LDQAYQL 292 (505)
Q Consensus 215 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~ 292 (505)
+++|+..|++..+.... +...+..+...+...|++++|...|++..+. -+.+...+..+...|...|. .+.+...
T Consensus 70 ~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 70 YDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 66666666666653211 3455666666666666666666666666652 12234555556555544433 3334444
Q ss_pred HHHCCCCCCH--HHHHHHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 010642 293 ITSMGVKPDS--TIWRTLLGACRIHKHVTLGERVIEHLIELKAQ 334 (505)
Q Consensus 293 ~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 334 (505)
++.. ..|+. ..+..+..++...|++++|+..|+++++..|.
T Consensus 147 ~~~~-~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 147 YKKL-SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHH-hCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 4444 12332 23333444455566677777777777766664
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.82 E-value=1.7e-07 Score=86.42 Aligned_cols=160 Identities=14% Similarity=0.029 Sum_probs=105.6
Q ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHH
Q 010642 62 QLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLL 138 (505)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ 138 (505)
+.+...+..+...+...|++++|...|++... .+..++..+...+.+.|++++|...+++... ..|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~----~~p~~~~~~~ 189 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL----QDQDTRYQGL 189 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG----GGCSHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch----hhcchHHHHH
Confidence 44455566666667777777777777776542 3556677777777777777777777777654 3444433222
Q ss_pred H-HHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC---hhHHHHHHHHHHhC
Q 010642 139 V-LQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE--KD---VVSWSAMISGLAMN 212 (505)
Q Consensus 139 l-l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~~---~~~~~~li~~~~~~ 212 (505)
. ...+...++.+.|...++++.+.. |.+...+..+...|...|++++|...|.++.+ |+ ...+..++..|...
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 2 223455666666777777777664 55667777777777777777777777777652 32 45677777888888
Q ss_pred CChHHHHHHHHHHH
Q 010642 213 GHGRDAIESFGAMQ 226 (505)
Q Consensus 213 g~~~~A~~~~~~m~ 226 (505)
|+.++|...|++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 88888877777654
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.81 E-value=1e-07 Score=88.83 Aligned_cols=221 Identities=11% Similarity=0.013 Sum_probs=148.3
Q ss_pred HCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 010642 108 RNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMA 187 (505)
Q Consensus 108 ~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A 187 (505)
..|++++|.+++++..+. .+.. + +...++++.|...|.++ ...|...|++++|
T Consensus 3 ~~~~~~eA~~~~~~a~k~---~~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKY---LKTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQA 55 (307)
T ss_dssp CHHHHHHHHHHHHHHHHH---HCCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHH---cccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHH
Confidence 356778888888877652 1110 0 11135666666655543 4567777888888
Q ss_pred HHHHhcCCC-----CC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccCCHHHH
Q 010642 188 FEVFKGMPE-----KD----VVSWSAMISGLAMNGHGRDAIESFGAMQRAG---VFPD--DQTFTGVLSACSHCGLVDEG 253 (505)
Q Consensus 188 ~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~~~ll~~~~~~g~~~~a 253 (505)
...|.+..+ .+ ..+|+.+...|.+.|++++|+..|++....- -.|. ..++..+...|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 777765532 11 3467788888889999999999988875421 1121 3567778888888 999999
Q ss_pred HHHHHHHhhhcCCc---C-CcchHHHHHHHHHhcCChHHHHHHHHHC-CC---CCC----HHHHHHHHHHHHhcCchhHH
Q 010642 254 MMFLDRMSKDFGIL---P-NIHHYGCVVDLLGRAGLLDQAYQLITSM-GV---KPD----STIWRTLLGACRIHKHVTLG 321 (505)
Q Consensus 254 ~~~~~~~~~~~~~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~ll~~~~~~g~~~~a 321 (505)
+..|++....+.-. + ...++..+...|.+.|++++|.+.|++. .+ .++ ...+..+...+...|+++.|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999887632111 1 1356788889999999999999999887 11 112 22566666777788999999
Q ss_pred HHHHHHHHHhcCCCCch-----HHHHHHHHHhCCCHHHHHHH
Q 010642 322 ERVIEHLIELKAQESGD-----YVLLLNLYSSVGDWEKVKEL 358 (505)
Q Consensus 322 ~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~a~~~ 358 (505)
...+++.. ..|....+ ...++.+| ..|+.+.+..+
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999999 77754432 33455555 56777666553
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.79 E-value=4e-07 Score=79.78 Aligned_cols=161 Identities=9% Similarity=-0.049 Sum_probs=97.4
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHHhhhcCCcCCcchH
Q 010642 198 DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCG----LVDEGMMFLDRMSKDFGILPNIHHY 273 (505)
Q Consensus 198 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~~ 273 (505)
++.++..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|++..+. + +...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-g---~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-G---SKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-T---CHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-C---CHHHH
Confidence 44444455555555555566666666555543 34444455555555 4 566666666666542 2 34455
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHC-CCCCC---HHHHHHHHHHHHh----cCchhHHHHHHHHHHHhcCCCCchHHH
Q 010642 274 GCVVDLLGR----AGLLDQAYQLITSM-GVKPD---STIWRTLLGACRI----HKHVTLGERVIEHLIELKAQESGDYVL 341 (505)
Q Consensus 274 ~~li~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 341 (505)
..|...|.. .+++++|.++|++. ...|+ ...+..|...|.. .+++++|...+++..+. +.++..+..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 555555555 56677777777666 33332 5566666666666 66777788888777776 445567777
Q ss_pred HHHHHHhC-C-----CHHHHHHHHHHHHhCCC
Q 010642 342 LLNLYSSV-G-----DWEKVKELREFMNEKGL 367 (505)
Q Consensus 342 l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 367 (505)
|..+|... | ++++|...+++..+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 77777654 2 77888888877776654
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.79 E-value=8.2e-08 Score=97.88 Aligned_cols=160 Identities=11% Similarity=0.020 Sum_probs=124.2
Q ss_pred cCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010642 181 CGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFL 257 (505)
Q Consensus 181 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 257 (505)
.|++++|...|++..+ .+...|..+...|.+.|++++|.+.|++..+... .+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999998764 3567899999999999999999999999988532 24678888999999999999999999
Q ss_pred HHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhc---CchhHHHHHHHHHHHhc
Q 010642 258 DRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIH---KHVTLGERVIEHLIELK 332 (505)
Q Consensus 258 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~ 332 (505)
++..+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |++++|...++++.+.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999874 2335678889999999999999999999988 4444 577888899999999 99999999999999999
Q ss_pred CCCCchHHHHH
Q 010642 333 AQESGDYVLLL 343 (505)
Q Consensus 333 ~~~~~~~~~l~ 343 (505)
|.+...|..+.
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888887665
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.77 E-value=3e-07 Score=81.33 Aligned_cols=58 Identities=14% Similarity=-0.011 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhcCCC--CC----hhHHHHHHHHHHHCCChhHHHHHHHHchh
Q 010642 67 LMTTLMDLYSTFEKSFEACKLFDEIPQ--RD----TVAWNVLISCYIRNQRTRDALCLFDNLNR 124 (505)
Q Consensus 67 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 124 (505)
.+..+...+.+.|++++|+..|+++.+ |+ ..++..+..+|.+.|++++|+..|++..+
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~ 69 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR 69 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344445556666666666666666542 21 23555666666666666666666666655
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.76 E-value=1e-07 Score=80.84 Aligned_cols=61 Identities=5% Similarity=-0.022 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC--CchHHHHHHHHHhCCCHHHHHHHHHHH
Q 010642 302 STIWRTLLGACRIHKHVTLGERVIEHLIELKAQE--SGDYVLLLNLYSSVGDWEKVKELREFM 362 (505)
Q Consensus 302 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m 362 (505)
...+..+...+...|++++|...++++.+..|.. +..+..+..+|...|+.++|...|++.
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 4444445555555555555555555555555432 234555555555555555555555443
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.76 E-value=1.1e-06 Score=80.88 Aligned_cols=144 Identities=9% Similarity=0.001 Sum_probs=70.2
Q ss_pred hhHHHHHHHHchhccCCCCCCH-HHHHHHHHHHHhcc--ChHHHHHHHHHHHHcCCCCchhHHHHHHHHH----Hhc---
Q 010642 112 TRDALCLFDNLNREESGCKPDD-VTCLLVLQACAHLG--ALEFGEKIHRYISEHGYGSKMNLCNSLIAMY----SKC--- 181 (505)
Q Consensus 112 ~~~A~~~~~~m~~~~~~~~pd~-~t~~~ll~~~~~~~--~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y----~~~--- 181 (505)
.++|+++++++.. +.|+. ..|+.--.++...+ +++++.+.++.++... |.+..+|+.-...+ .+.
T Consensus 49 s~~aL~~t~~~L~----~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 49 SERALHITELGIN----ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp SHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHH----HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 3466666666655 34443 33444444555555 6666666666666553 33444444433333 333
Q ss_pred CCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC------H
Q 010642 182 GSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGR--DAIESFGAMQRAGVFPDDQTFTGVLSACSHCGL------V 250 (505)
Q Consensus 182 g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~------~ 250 (505)
++++++..+++++. .+|..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.-.....+.+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 45555555555543 234445555444455555555 555555555544332 33444433333333333 4
Q ss_pred HHHHHHHHHHh
Q 010642 251 DEGMMFLDRMS 261 (505)
Q Consensus 251 ~~a~~~~~~~~ 261 (505)
+++++.++.+.
T Consensus 203 ~eEl~~~~~aI 213 (306)
T 3dra_A 203 DEELNYVKDKI 213 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.76 E-value=1.6e-07 Score=95.74 Aligned_cols=147 Identities=8% Similarity=-0.122 Sum_probs=109.8
Q ss_pred ccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHH
Q 010642 146 LGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESF 222 (505)
Q Consensus 146 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 222 (505)
.|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999999988764 55688899999999999999999999997653 45678999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhc---CChHHHHHHHHHC
Q 010642 223 GAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRA---GLLDQAYQLITSM 296 (505)
Q Consensus 223 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 296 (505)
++..+... .+...+..+..++...|++++|.+.+++..+. .+.+...+..+...+... |++++|.+.+++.
T Consensus 81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 99987532 24678888999999999999999999999874 233567788899999999 9999999999887
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=7.1e-07 Score=77.93 Aligned_cols=146 Identities=8% Similarity=-0.067 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 010642 170 LCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGL 249 (505)
Q Consensus 170 ~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 249 (505)
.+..+...|...|++++|...|++...++...|..+...|.+.|++++|+..|++..... +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 345667778888889999988888887788888888888888888888888888887653 2245677778888888888
Q ss_pred HHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010642 250 VDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPD-STIWRTLLGACRIHKHVTLGERVIEHL 328 (505)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 328 (505)
+++|...|++..+...-.+... | ...| +...|+ ...|..+..++...|++++|...++++
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~-~-------~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLID-Y-------KILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEE-C-------GGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHH-H-------HHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8888888888876311111110 0 0000 012332 356677777788888888888888888
Q ss_pred HHhcCCC
Q 010642 329 IELKAQE 335 (505)
Q Consensus 329 ~~~~~~~ 335 (505)
.+..|.+
T Consensus 148 l~~~p~~ 154 (213)
T 1hh8_A 148 TSMKSEP 154 (213)
T ss_dssp HTTCCSG
T ss_pred HHcCccc
Confidence 8887765
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.74 E-value=5e-07 Score=79.13 Aligned_cols=154 Identities=11% Similarity=-0.004 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC----CHHHHHHHH
Q 010642 13 EGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFE----KSFEACKLF 88 (505)
Q Consensus 13 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 88 (505)
+|+..|++..+.| +...+..+...+...+++++|...+++..+.| ++..+..|..+|.. + +.++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 5666777776654 55666667677777777777777777776654 45556666666665 5 667777766
Q ss_pred hcCCC-CChhHHHHHHHHHHH----CCChhHHHHHHHHchhccCCCCCC---HHHHHHHHHHHHh----ccChHHHHHHH
Q 010642 89 DEIPQ-RDTVAWNVLISCYIR----NQRTRDALCLFDNLNREESGCKPD---DVTCLLVLQACAH----LGALEFGEKIH 156 (505)
Q Consensus 89 ~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~pd---~~t~~~ll~~~~~----~~~~~~a~~i~ 156 (505)
++..+ .+..++..|...|.. .+++++|+..|++... ..|+ ...+..+...+.. .+++++|...+
T Consensus 77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~----~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR----DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS----STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH----cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 66543 355566666666655 5666666666666644 2222 4455555555555 45566666666
Q ss_pred HHHHHcCCCCchhHHHHHHHHHH
Q 010642 157 RYISEHGYGSKMNLCNSLIAMYS 179 (505)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~~~y~ 179 (505)
++..+. +.+...+..|..+|.
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQ 173 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHH
T ss_pred HHHHHc--CCCHHHHHHHHHHHH
Confidence 665554 122334444444443
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.74 E-value=9.6e-08 Score=89.08 Aligned_cols=158 Identities=7% Similarity=-0.073 Sum_probs=73.3
Q ss_pred HHHHHHCCChhHHHHHHHHchhcc--CCCCCC-HHHHHHHHHHHHhccChHHHHHHHHHHHHc----CCCC-chhHHHHH
Q 010642 103 ISCYIRNQRTRDALCLFDNLNREE--SGCKPD-DVTCLLVLQACAHLGALEFGEKIHRYISEH----GYGS-KMNLCNSL 174 (505)
Q Consensus 103 i~~~~~~g~~~~A~~~~~~m~~~~--~~~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----~~~~-~~~~~~~l 174 (505)
...|...|++++|...|.+..... .+-++. ..+|..+...+...|++++|...+++.++. |-+. ...+++.+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555566666655555543310 010000 234555555555666666666665555432 1000 12344455
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCCH-HHHHHH
Q 010642 175 IAMYSKCGSLGMAFEVFKGMPE-----KD----VVSWSAMISGLAMNGHGRDAIESFGAMQRA----GVFPDD-QTFTGV 240 (505)
Q Consensus 175 ~~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~l 240 (505)
..+|.+ |++++|...|++..+ .+ ..+++.+...|.+.|++++|+..|++.... +..+.. .++..+
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 555555 555555555554321 00 234555555555666666666665555431 111111 133344
Q ss_pred HHHHhccCCHHHHHHHHHHHh
Q 010642 241 LSACSHCGLVDEGMMFLDRMS 261 (505)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~ 261 (505)
..++...|++++|...|++..
T Consensus 202 g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHh
Confidence 444445555555555555554
No 114
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.74 E-value=1.8e-08 Score=83.04 Aligned_cols=122 Identities=12% Similarity=-0.009 Sum_probs=102.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhhcCCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcC
Q 010642 240 VLSACSHCGLVDEGMMFLDRMSKDFGILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHK 316 (505)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 316 (505)
|...+...|++++|+..+..... ..| +...+..+...|.+.|++++|.+.|++. .+.| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34556678899999999998874 334 4566778899999999999999999998 5556 5779999999999999
Q ss_pred chhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHH-HHHHHh
Q 010642 317 HVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKEL-REFMNE 364 (505)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 364 (505)
++++|+..++++++..|.++.++..+...|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999877665 466655
No 115
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.73 E-value=6e-06 Score=76.07 Aligned_cols=213 Identities=13% Similarity=0.128 Sum_probs=140.6
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--CHHHHHHHHhcCCC---CChhHHHHHHHHH----HhC---CCh
Q 010642 148 ALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCG--SLGMAFEVFKGMPE---KDVVSWSAMISGL----AMN---GHG 215 (505)
Q Consensus 148 ~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g--~~~~A~~~~~~m~~---~~~~~~~~li~~~----~~~---g~~ 215 (505)
..++|.+..+.+++.+ |.+..+|+.--..+...| ++++++..++.+.. .+..+|+.--..+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3457777777777765 556667777777777777 78888888877652 3455666554444 444 677
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH--HHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCC------hH
Q 010642 216 RDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVD--EGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGL------LD 287 (505)
Q Consensus 216 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~ 287 (505)
++++++++++.+...+ +...|+.-...+.+.|.++ ++++.++.+.+. -+-|...|+.-...+.+.++ ++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 7888888888775433 5566666555666667666 778888887763 22344555555555555555 77
Q ss_pred HHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhH-HHHHHHHHHHhc---CCCCchHHHHHHHHHhCCCHHHHHHHHHH
Q 010642 288 QAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTL-GERVIEHLIELK---AQESGDYVLLLNLYSSVGDWEKVKELREF 361 (505)
Q Consensus 288 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 361 (505)
++++.++++ ...| |...|+.+-..+.+.|+... ...+.+++.+.+ +.++..+..++.+|.+.|+.++|.++++.
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 777777766 3334 56677777777766666333 445666655554 56666777788888888888888888887
Q ss_pred HHh
Q 010642 362 MNE 364 (505)
Q Consensus 362 m~~ 364 (505)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.70 E-value=3.5e-06 Score=77.80 Aligned_cols=159 Identities=8% Similarity=-0.016 Sum_probs=112.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCc----chHHH
Q 010642 205 MISGLAMNGHGRDAIESFGAMQRAGV-FPDDQ----TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNI----HHYGC 275 (505)
Q Consensus 205 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~ 275 (505)
.+..+...|++++|..++++...... .|+.. .+..+...+...+++++|...+++......-.++. ..++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667778888888888888775321 22211 23345666677778888888888887631112221 25778
Q ss_pred HHHHHHhcCChHHHHHHHHHC-----CC---CCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC------CchHH
Q 010642 276 VVDLLGRAGLLDQAYQLITSM-----GV---KPD-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQE------SGDYV 340 (505)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~~-----~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~ 340 (505)
+...|...|++++|...++++ .. .|. ..++..+...|...|++++|...+++.++..+.. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888888888888888776 11 112 3377888899999999999999999988765222 45788
Q ss_pred HHHHHHHhCCC-HHHHHHHHHHHH
Q 010642 341 LLLNLYSSVGD-WEKVKELREFMN 363 (505)
Q Consensus 341 ~l~~~~~~~g~-~~~a~~~~~~m~ 363 (505)
.+..+|.+.|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 699999988765
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.67 E-value=6e-07 Score=78.43 Aligned_cols=141 Identities=10% Similarity=-0.104 Sum_probs=76.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccC
Q 010642 69 TTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGA 148 (505)
Q Consensus 69 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~ 148 (505)
..+...+...|++++|...|++...++..+|..+...|.+.|++++|+..|++... . .+.+...+..+..++...|+
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~-~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--R-DKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h-CccchHHHHHHHHHHHHccc
Confidence 34455566666666676666666666666666666666666666666666666655 1 12344555566666666666
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 010642 149 LEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRA 228 (505)
Q Consensus 149 ~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 228 (505)
+++|.+.++.+.+.. +.+.... |...|. .........|..+..+|.+.|++++|...|++..+.
T Consensus 87 ~~~A~~~~~~al~~~-~~~~~~~------~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQL-RGNQLID------YKILGL---------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTT-TTCSEEE------CGGGTB---------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC-CCccHHH------HHHhcc---------ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666666666542 1111000 000000 000011245556666666666666666666666653
No 118
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.66 E-value=6.6e-06 Score=81.73 Aligned_cols=337 Identities=10% Similarity=-0.041 Sum_probs=203.9
Q ss_pred CCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC-cHHHHHHHHHHHHh-CC-CCChhHHHHHHHHHHh----CCCH
Q 010642 9 SSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCS-LMGGLQIHARVLRD-GY-QLDSQLMTTLMDLYST----FEKS 81 (505)
Q Consensus 9 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~li~~~~~----~g~~ 81 (505)
|+++.+..+|++.+.. .|+...|..-+.-..+.++ .+....+|+.++.. |. ..+..+|...+..+.. .+++
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 6788889999988874 4688888888877666653 34567788877764 43 3466788888776542 3568
Q ss_pred HHHHHHHhcCCC-C--Ch-hHHHHHHHHHH-------------HCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHH
Q 010642 82 FEACKLFDEIPQ-R--DT-VAWNVLISCYI-------------RNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACA 144 (505)
Q Consensus 82 ~~A~~~~~~~~~-~--~~-~~~~~li~~~~-------------~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~ 144 (505)
+.+.++|++... | +. ..|......-. ..+.+..|..+++.+.....+ .+...|...+.--.
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~--~s~~~W~~y~~~E~ 183 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG--WSVKNAARLIDLEM 183 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHh
Confidence 889999987754 2 11 12222211100 012233344444444330000 12234444333322
Q ss_pred hc--cC-----hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-C-ChhHHHHHHHHHHhCCCh
Q 010642 145 HL--GA-----LEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE-K-DVVSWSAMISGLAMNGHG 215 (505)
Q Consensus 145 ~~--~~-----~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~-~-~~~~~~~li~~~~~~g~~ 215 (505)
.. +- .+.+..+|++++... +.+..+|...+..+.+.|+.+.|..+|++... | +...|. .|+...+.
T Consensus 184 ~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~ 258 (493)
T 2uy1_A 184 ENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDE 258 (493)
T ss_dssp TCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTC
T ss_pred cCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcch
Confidence 11 11 345778999988864 66788888889999999999999999986532 3 222332 23332222
Q ss_pred HHHHHHHHHHHHC---------CCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhc
Q 010642 216 RDAIESFGAMQRA---------GVFP---DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRA 283 (505)
Q Consensus 216 ~~A~~~~~~m~~~---------g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 283 (505)
++. ++.+.+. +..+ ....|...+....+.+..+.|..+|+.. ...+ .+...|......-...
T Consensus 259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~ 332 (493)
T 2uy1_A 259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYA 332 (493)
T ss_dssp THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHH
Confidence 222 2222211 0011 1234566666666778899999999999 4212 2334444333333333
Q ss_pred C-ChHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHH
Q 010642 284 G-LLDQAYQLITSM--GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELRE 360 (505)
Q Consensus 284 g-~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 360 (505)
+ +.+.|..+|+.. ...-+...|...+.-....|+.+.|..+++++. .....|...+..-...|+.+.+..+++
T Consensus 333 ~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~ 408 (493)
T 2uy1_A 333 TGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVD 408 (493)
T ss_dssp HCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3 699999999887 222234566777777788899999999999972 334567777777778899999999888
Q ss_pred HHHh
Q 010642 361 FMNE 364 (505)
Q Consensus 361 ~m~~ 364 (505)
++.+
T Consensus 409 ~~~~ 412 (493)
T 2uy1_A 409 QKMD 412 (493)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 119
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.66 E-value=1.3e-07 Score=77.74 Aligned_cols=102 Identities=10% Similarity=-0.031 Sum_probs=87.3
Q ss_pred CCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHH
Q 010642 265 GILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVL 341 (505)
Q Consensus 265 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 341 (505)
.+.| +...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..|+++.+..|.++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3344 3456777788888899999999999888 4455 57789999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 342 LLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 342 l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
+..+|...|++++|...|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987754
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.65 E-value=9.4e-07 Score=81.67 Aligned_cols=163 Identities=8% Similarity=-0.003 Sum_probs=111.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC----cc
Q 010642 201 SWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDD-----QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN----IH 271 (505)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 271 (505)
.+...+..+...|++++|++.+.+..+.....+. ..+..+...+...|++++|...+++..+...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444556677777788887777776654222111 12334455567778888888888877642111111 33
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHC----CCCCC-----HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCC--C----C
Q 010642 272 HYGCVVDLLGRAGLLDQAYQLITSM----GVKPD-----STIWRTLLGACRIHKHVTLGERVIEHLIELKAQ--E----S 336 (505)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~----~ 336 (505)
.|+.+...|...|++++|.+.+++. ...|+ ..++..+...|...|++++|...+++..+..+. + .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6777788888888888888888766 11222 257788888999999999999999998776421 1 3
Q ss_pred chHHHHHHHHHhCCCHHHH-HHHHHHHH
Q 010642 337 GDYVLLLNLYSSVGDWEKV-KELREFMN 363 (505)
Q Consensus 337 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 363 (505)
.+|..+...|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5688899999999999999 77777654
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.62 E-value=4.6e-06 Score=76.99 Aligned_cols=160 Identities=7% Similarity=-0.065 Sum_probs=116.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCC---Ch------hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CC----HHHHH
Q 010642 173 SLIAMYSKCGSLGMAFEVFKGMPEK---DV------VSWSAMISGLAMNGHGRDAIESFGAMQRAGVF-PD----DQTFT 238 (505)
Q Consensus 173 ~l~~~y~~~g~~~~A~~~~~~m~~~---~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~ 238 (505)
..+..+...|++++|..++++..+. +. ..+..+...+...|++++|+..|++....... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3466788889999999888875432 11 12334666677778999999999998874222 23 23688
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhhc----CCcCC-cchHHHHHHHHHhcCChHHHHHHHHHC-------CCCCC-HHHH
Q 010642 239 GVLSACSHCGLVDEGMMFLDRMSKDF----GILPN-IHHYGCVVDLLGRAGLLDQAYQLITSM-------GVKPD-STIW 305 (505)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~ 305 (505)
.+...|...|++++|..+|+++.+.. +..+. ..++..+...|.+.|++++|.+.+++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88889999999999999999887421 11222 236788888999999999999988876 22233 5688
Q ss_pred HHHHHHHHhcCc-hhHHHHHHHHHHHhc
Q 010642 306 RTLLGACRIHKH-VTLGERVIEHLIELK 332 (505)
Q Consensus 306 ~~ll~~~~~~g~-~~~a~~~~~~~~~~~ 332 (505)
..+..++...|+ +++|...++++....
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 888899999995 699999999887643
No 122
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.60 E-value=6.8e-06 Score=81.65 Aligned_cols=323 Identities=7% Similarity=-0.065 Sum_probs=198.1
Q ss_pred hcC-CchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC-HHHH
Q 010642 7 MSS-SPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEK-SFEA 84 (505)
Q Consensus 7 ~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A 84 (505)
+.| +...|..+|+.+... -|. ++++.+.++|+..+.. .|+..+|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 377788888887753 232 7899999999999874 4799999999988777663 3445
Q ss_pred HHHHhcCC------CCChhHHHHHHHHHH----HCCChhHHHHHHHHchhccCCCCCCH--HHHHHHHHHHHh-------
Q 010642 85 CKLFDEIP------QRDTVAWNVLISCYI----RNQRTRDALCLFDNLNREESGCKPDD--VTCLLVLQACAH------- 145 (505)
Q Consensus 85 ~~~~~~~~------~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~~~pd~--~t~~~ll~~~~~------- 145 (505)
..+|+... ..+...|...+.-+. .+++.+.+..+|++... +++.. ..|..... +..
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~----~P~~~~~~lw~~Y~~-fE~~~~~~~~ 142 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ----TPMGSLSELWKDFEN-FELELNKITG 142 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT----SCCTTHHHHHHHHHH-HHHHHCHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh----ChhhhHHHHHHHHHH-HHHHhccccH
Confidence 56666533 236678888877654 34678889999999976 33321 12221111 111
Q ss_pred -------ccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--C-----HHHHHHHHhcCCC---CChhHHHHHHHH
Q 010642 146 -------LGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCG--S-----LGMAFEVFKGMPE---KDVVSWSAMISG 208 (505)
Q Consensus 146 -------~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g--~-----~~~A~~~~~~m~~---~~~~~~~~li~~ 208 (505)
.+.+..|..++..+...--..+...|...++.-...+ - .+.+..+|+++.. .+...|-..+.-
T Consensus 143 ~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~ 222 (493)
T 2uy1_A 143 KKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEY 222 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 1223344445544443210112335555555433221 1 3456677777653 456788888888
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhc---C--------CcCCcchHHHHH
Q 010642 209 LAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDF---G--------ILPNIHHYGCVV 277 (505)
Q Consensus 209 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~--------~~p~~~~~~~li 277 (505)
+.+.|+.++|..+|++.... |....+.. +|....+.++. ++.+.+.+ . .......|...+
T Consensus 223 ~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~ 293 (493)
T 2uy1_A 223 LIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHL 293 (493)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHH
Confidence 88999999999999999986 55433222 22221111111 22222211 0 001124577777
Q ss_pred HHHHhcCChHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcC-chhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHH
Q 010642 278 DLLGRAGLLDQAYQLITSMGVKP--DSTIWRTLLGACRIHK-HVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEK 354 (505)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 354 (505)
..+.+.+.++.|..+|+++ ..| +...|......-...+ +.+.|..+|+...+..|.++..+...++...+.|+.+.
T Consensus 294 ~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~ 372 (493)
T 2uy1_A 294 NYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEEN 372 (493)
T ss_dssp HHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHH
Confidence 7777888999999999998 223 3444543222222233 69999999999999888777777777888889999999
Q ss_pred HHHHHHHH
Q 010642 355 VKELREFM 362 (505)
Q Consensus 355 a~~~~~~m 362 (505)
|..+|++.
T Consensus 373 aR~l~er~ 380 (493)
T 2uy1_A 373 ARALFKRL 380 (493)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHH
Confidence 99999986
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.59 E-value=8.4e-07 Score=73.80 Aligned_cols=126 Identities=10% Similarity=-0.023 Sum_probs=88.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHH
Q 010642 236 TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACR 313 (505)
Q Consensus 236 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 313 (505)
.+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3455555666667777777777766653 2234556666777777777777777777766 2233 4667778888888
Q ss_pred hcCchhHHHHHHHHHHHhcCCCCchHHH--HHHHHHhCCCHHHHHHHHHHHH
Q 010642 314 IHKHVTLGERVIEHLIELKAQESGDYVL--LLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
..|++++|...++++.+..|.+...+.. ++..+...|++++|.+.++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8899999999999988888887776644 4444778889999988887664
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.59 E-value=1.5e-07 Score=86.46 Aligned_cols=50 Identities=8% Similarity=-0.111 Sum_probs=34.5
Q ss_pred cCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhC-CCHHHHHHHHHHHHh
Q 010642 315 HKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSV-GDWEKVKELREFMNE 364 (505)
Q Consensus 315 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 364 (505)
.|+.++|.+.+++..+..|.+......+...+.+. +.+++|.++|.+..+
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 57777777777777777776655555555555555 667788888877654
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.57 E-value=5.9e-07 Score=71.33 Aligned_cols=106 Identities=8% Similarity=-0.054 Sum_probs=61.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHH
Q 010642 236 TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACR 313 (505)
Q Consensus 236 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 313 (505)
.+......+.+.|++++|+..|++..+. .+.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3444555555566666666666655542 1223445555555666666666666666555 3333 3556666666666
Q ss_pred hcCchhHHHHHHHHHHHhcCCCCchHHHHH
Q 010642 314 IHKHVTLGERVIEHLIELKAQESGDYVLLL 343 (505)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 343 (505)
..|++++|...|+++++++|.+...+..|.
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 677777777777777777666665555443
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.56 E-value=1.1e-06 Score=68.79 Aligned_cols=113 Identities=13% Similarity=0.093 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCC-CCHHHHHHHHHHH
Q 010642 235 QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVK-PDSTIWRTLLGAC 312 (505)
Q Consensus 235 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~ 312 (505)
..+..+...+...|++++|..+++++.+. .+.+...+..+...+.+.|++++|..+++++ ... .+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 44555555666666666666666666543 1223445566666666667777776666665 222 2456677777777
Q ss_pred HhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhC
Q 010642 313 RIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSV 349 (505)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 349 (505)
...|+++.|...++++.+..|.++..+..+...+...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 7888888888888888887777777777666666543
No 127
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.55 E-value=2.8e-07 Score=75.56 Aligned_cols=97 Identities=9% Similarity=-0.001 Sum_probs=83.6
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010642 269 NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLY 346 (505)
Q Consensus 269 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 346 (505)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++.+..|.++..+..+..+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4556677788888999999999999887 3444 6778888889999999999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHHHHHHhC
Q 010642 347 SSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 347 ~~~g~~~~a~~~~~~m~~~ 365 (505)
...|++++|...|++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988664
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.55 E-value=1.4e-06 Score=80.39 Aligned_cols=162 Identities=6% Similarity=-0.054 Sum_probs=109.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC---CCh------hHHHHHHHHHHhCCChHHHHHHHHHHHHCCC---CCC--HH
Q 010642 170 LCNSLIAMYSKCGSLGMAFEVFKGMPE---KDV------VSWSAMISGLAMNGHGRDAIESFGAMQRAGV---FPD--DQ 235 (505)
Q Consensus 170 ~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~ 235 (505)
.+...+..|...|++++|.+.+++..+ ... ..+..+...+...|++++|+..|++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444566677778888888777764321 111 1233455566777888888888888765321 111 34
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC-----cchHHHHHHHHHhcCChHHHHHHHHHC-------CCCCC-H
Q 010642 236 TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN-----IHHYGCVVDLLGRAGLLDQAYQLITSM-------GVKPD-S 302 (505)
Q Consensus 236 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~ 302 (505)
+++.+...|...|++++|...|++..+.....|+ ..++..+...|.+.|++++|.+.+++. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7777888888888888888888887732111122 247778888888888988888888776 11111 5
Q ss_pred HHHHHHHHHHHhcCchhHH-HHHHHHHHHh
Q 010642 303 TIWRTLLGACRIHKHVTLG-ERVIEHLIEL 331 (505)
Q Consensus 303 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 331 (505)
.+|..+...+...|++++| ...+++....
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6778888888899999999 7778777654
No 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.52 E-value=7.9e-07 Score=70.58 Aligned_cols=100 Identities=11% Similarity=0.072 Sum_probs=89.0
Q ss_pred CcCC-cchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHH
Q 010642 266 ILPN-IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLL 342 (505)
Q Consensus 266 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 342 (505)
+.|+ ...+......|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++.+|.++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3444 356777888999999999999999987 4445 578899999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhC
Q 010642 343 LNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 343 ~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
..+|...|++++|.+.|++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.51 E-value=1.1e-06 Score=69.84 Aligned_cols=113 Identities=11% Similarity=-0.024 Sum_probs=64.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHH
Q 010642 236 TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACR 313 (505)
Q Consensus 236 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 313 (505)
.+..+...+...|++++|...|++..+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3444444444555555555555544431 1123344444555555555555555555544 2222 4556666677777
Q ss_pred hcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCC
Q 010642 314 IHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVG 350 (505)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 350 (505)
..|++++|...+++..+..|.+...+..+..++...|
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 7777777777777777777777677777777666554
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.51 E-value=1.1e-06 Score=69.42 Aligned_cols=116 Identities=9% Similarity=-0.044 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHH
Q 010642 235 QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGAC 312 (505)
Q Consensus 235 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 312 (505)
..+..+...+...|++++|...+++.... .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34555555666666666666666666553 1224455666666677777777777777665 2233 456777777788
Q ss_pred HhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCH
Q 010642 313 RIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDW 352 (505)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 352 (505)
...|++++|...++++.+..|.++..+..+..++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 8888888888888888888888777788888888777664
No 132
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.48 E-value=3.9e-06 Score=75.64 Aligned_cols=122 Identities=6% Similarity=-0.086 Sum_probs=54.3
Q ss_pred HHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCc--hhHHHHHHHHH
Q 010642 101 VLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSK--MNLCNSLIAMY 178 (505)
Q Consensus 101 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~--~~~~~~l~~~y 178 (505)
.+...+...|++++|.++|+.+.. ..|+......+...+.+.+++++|+..+....+.. .|. ..++..+..++
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~----~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPV----AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCC----TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 334444444555555555544432 12322233333334444455555555444332221 110 12344445555
Q ss_pred HhcCCHHHHHHHHhcCCC-C-----ChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010642 179 SKCGSLGMAFEVFKGMPE-K-----DVVSWSAMISGLAMNGHGRDAIESFGAMQR 227 (505)
Q Consensus 179 ~~~g~~~~A~~~~~~m~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 227 (505)
.+.|++++|+..|++... + ....+.....++.+.|+.++|..+|+++..
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555555555554421 1 112334444555566666666666666655
No 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.45 E-value=1.6e-06 Score=74.94 Aligned_cols=62 Identities=16% Similarity=0.033 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHh
Q 010642 200 VSWSAMISGLAMNGHGRDAIESFGAMQR----AGVFP-DDQTFTGVLSACSHCGLVDEGMMFLDRMS 261 (505)
Q Consensus 200 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (505)
.++..+...|...|++++|...+++... .+..| ....+..+...+...|++++|...+++..
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 93 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444555555555555555554432 11111 11234444444555555555555555444
No 134
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.45 E-value=3.9e-06 Score=69.65 Aligned_cols=92 Identities=8% Similarity=-0.017 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 010642 98 AWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAM 177 (505)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~ 177 (505)
.|..+...+...|++++|...|++.... .+.+..++..+...+...|++++|...+.+..+.. +.+..++..+..+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3445555555555555555555555441 12234444445555555555555555555555442 2333444444444
Q ss_pred HHhcCCHHHHHHHHhc
Q 010642 178 YSKCGSLGMAFEVFKG 193 (505)
Q Consensus 178 y~~~g~~~~A~~~~~~ 193 (505)
|.+.|++++|...|++
T Consensus 91 ~~~~~~~~~A~~~~~~ 106 (166)
T 1a17_A 91 NMALGKFRAALRDYET 106 (166)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHH
Confidence 4444444444444433
No 135
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.44 E-value=1e-06 Score=76.05 Aligned_cols=116 Identities=15% Similarity=0.035 Sum_probs=50.2
Q ss_pred CCCHHHHHH---HHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhcc--CCCCC-CHHHHHHHHHHHHhccChHH
Q 010642 78 FEKSFEACK---LFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREE--SGCKP-DDVTCLLVLQACAHLGALEF 151 (505)
Q Consensus 78 ~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~p-d~~t~~~ll~~~~~~~~~~~ 151 (505)
.|++++|.+ .+..-+.....+++.+...+...|++++|+..|++..... .+..| ...++..+...+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555 3333222334455555555555555555555555543310 11111 12334444445555555555
Q ss_pred HHHHHHHHHHc----CCC--CchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 010642 152 GEKIHRYISEH----GYG--SKMNLCNSLIAMYSKCGSLGMAFEVFKG 193 (505)
Q Consensus 152 a~~i~~~~~~~----~~~--~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 193 (505)
|...+.+..+. +.. ....++..+...|...|++++|...|++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 55555544432 101 1123344444455555555555544443
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.43 E-value=5e-07 Score=82.94 Aligned_cols=90 Identities=10% Similarity=-0.018 Sum_probs=39.5
Q ss_pred hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHH
Q 010642 32 ACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIR 108 (505)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 108 (505)
.+..+...+...|++++|...+..+++.. +.+...+..+...|.+.|++++|...|++..+ .+..+|..+..+|..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34444444444455555555555444443 22344444444444444444444444444332 133344444444444
Q ss_pred CCChhHHHHHHHHc
Q 010642 109 NQRTRDALCLFDNL 122 (505)
Q Consensus 109 ~g~~~~A~~~~~~m 122 (505)
.|++++|+..|++.
T Consensus 85 ~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 85 MESYDEAIANLQRA 98 (281)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 44444444444443
No 137
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.43 E-value=1.5e-06 Score=82.01 Aligned_cols=93 Identities=9% Similarity=-0.071 Sum_probs=79.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHh
Q 010642 271 HHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSS 348 (505)
Q Consensus 271 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 348 (505)
..|..+..+|.+.|++++|...+++. .+.| +...|..+..++...|++++|...|+++++..|.+...+..+..++..
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 57777888888888888888888887 4444 577888899999999999999999999999999999999999999999
Q ss_pred CCCHHHH-HHHHHHHH
Q 010642 349 VGDWEKV-KELREFMN 363 (505)
Q Consensus 349 ~g~~~~a-~~~~~~m~ 363 (505)
.|++++| ..+++.|.
T Consensus 277 ~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 277 IRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999988 44666664
No 138
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.42 E-value=7.4e-07 Score=75.37 Aligned_cols=120 Identities=8% Similarity=0.058 Sum_probs=78.6
Q ss_pred hccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHH-HHhcCch--h
Q 010642 245 SHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGA-CRIHKHV--T 319 (505)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~~--~ 319 (505)
...|++++|...++...+. .+.+...+..+...|...|++++|...|++. ...| +...|..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3455666666666666543 1234456666666677777777777777665 2223 45566666666 6677777 8
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 320 LGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
+|...++++.+..|.++..+..+...|...|++++|...+++..+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888888887777777788888888888888888888776643
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.42 E-value=4.6e-07 Score=81.66 Aligned_cols=131 Identities=13% Similarity=-0.067 Sum_probs=73.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC--cchHHHHHHHHHh
Q 010642 205 MISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN--IHHYGCVVDLLGR 282 (505)
Q Consensus 205 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~ 282 (505)
....+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..++.+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHHH
Confidence 444555566666666666655442 233333333344556666666666666644331 1 111 1245555666667
Q ss_pred cCChHHHHHHHHHC--CCC-CC--HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHH
Q 010642 283 AGLLDQAYQLITSM--GVK-PD--STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYV 340 (505)
Q Consensus 283 ~g~~~~A~~~~~~~--~~~-p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 340 (505)
.|++++|++.|++. +-. |. ...+.....++...|+.++|...|+++....|. ...+.
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~ 245 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAA 245 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHH
Confidence 77777777777666 211 32 234555566677777777777777777777776 44333
No 140
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.41 E-value=0.0001 Score=68.71 Aligned_cols=179 Identities=9% Similarity=0.082 Sum_probs=120.4
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCH-HHHHHHHHHHHhcc-ChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 010642 99 WNVLISCYIRNQRTRDALCLFDNLNREESGCKPDD-VTCLLVLQACAHLG-ALEFGEKIHRYISEHGYGSKMNLCNSLIA 176 (505)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~-~t~~~ll~~~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~l~~ 176 (505)
++.+-....+.+..++|+++++++.. +.|+. ..|+.--.++...+ .++++.+.++.+++.. +.+..+|+.-..
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~----~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~w 131 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVR----MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLL 131 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH----hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 44444444555666789999998877 44544 44566666666677 5888999998888775 567778877777
Q ss_pred HHHhc-C-CHHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010642 177 MYSKC-G-SLGMAFEVFKGMPEK---DVVSWSAMISGLAMNGHGR--------DAIESFGAMQRAGVFPDDQTFTGVLSA 243 (505)
Q Consensus 177 ~y~~~-g-~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~~ 243 (505)
.+.+. + ++++++++++++.+. |..+|+--.-.+.+.|.++ ++++.++++.+..+. |...|+.....
T Consensus 132 lL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~l 210 (349)
T 3q7a_A 132 LLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYL 210 (349)
T ss_dssp HHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 77766 6 788888888887754 5566666555555555555 888888888876443 66677766666
Q ss_pred HhccCC-------HHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCC
Q 010642 244 CSHCGL-------VDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGL 285 (505)
Q Consensus 244 ~~~~g~-------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 285 (505)
+.+.+. ++++++.+++.... .+-|...|+-+-..+.+.|+
T Consensus 211 L~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 211 RVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 666665 57777777777653 23345566665555655554
No 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.41 E-value=1.3e-06 Score=71.67 Aligned_cols=60 Identities=13% Similarity=0.021 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010642 168 MNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQR 227 (505)
Q Consensus 168 ~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 227 (505)
...|..+..+|.+.|++++|...|++.. ..++..|..+..+|.+.|++++|+..|++..+
T Consensus 70 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333334444444444444444443332 12333444444444444444444444444444
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.40 E-value=1.2e-06 Score=73.99 Aligned_cols=119 Identities=13% Similarity=0.143 Sum_probs=87.5
Q ss_pred cchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHH-HHhCCCH-
Q 010642 4 AYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDL-YSTFEKS- 81 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~- 81 (505)
.+...|++++|+..|+...... +.+...+..+...+...|++++|...++.+++.. +.+..++..+... |...|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcc
Confidence 4566788888888888887764 2356778888888888888888888888888775 3466677777777 7778887
Q ss_pred -HHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchh
Q 010642 82 -FEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNR 124 (505)
Q Consensus 82 -~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 124 (505)
++|...|+...+ .+..+|..+...|...|++++|+..|++...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 888888877643 3567778888888888888888888888766
No 143
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.40 E-value=2.1e-06 Score=69.63 Aligned_cols=96 Identities=9% Similarity=-0.067 Sum_probs=80.8
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 010642 270 IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYS 347 (505)
Q Consensus 270 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 347 (505)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++.+..|.++..+..+..+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 445566677788888999998888887 3344 57788888888999999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHHHHHhC
Q 010642 348 SVGDWEKVKELREFMNEK 365 (505)
Q Consensus 348 ~~g~~~~a~~~~~~m~~~ 365 (505)
..|++++|.+.+++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999887654
No 144
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.38 E-value=5.8e-06 Score=64.60 Aligned_cols=62 Identities=13% Similarity=0.082 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHc
Q 010642 98 AWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEH 162 (505)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 162 (505)
+|..+...+.+.|++++|+..|+++.. . .+.+..++..+...+...|++++|...++++.+.
T Consensus 45 ~~~~la~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 45 AWYNLGNAYYKQGDYDEAIEYYQKALE--L-DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--h-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 334444444444444444444444433 1 1122333344444444444444444444444433
No 145
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.36 E-value=3.1e-06 Score=64.82 Aligned_cols=99 Identities=12% Similarity=0.043 Sum_probs=77.2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCC--CCchHHHHHH
Q 010642 269 NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQ--ESGDYVLLLN 344 (505)
Q Consensus 269 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~ 344 (505)
+...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...+++..+..|. +...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3456667777778888888888888776 2233 5667777888888888888888888888888888 7788888888
Q ss_pred HHHhC-CCHHHHHHHHHHHHhCCC
Q 010642 345 LYSSV-GDWEKVKELREFMNEKGL 367 (505)
Q Consensus 345 ~~~~~-g~~~~a~~~~~~m~~~~~ 367 (505)
.|... |++++|.+.+++..+..-
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 88888 888888888888876543
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.35 E-value=3.4e-06 Score=66.64 Aligned_cols=95 Identities=13% Similarity=-0.025 Sum_probs=73.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHh
Q 010642 271 HHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSS 348 (505)
Q Consensus 271 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 348 (505)
..+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++.+..|.++..|..+..+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34555666777778888887777776 3334 466777888888888888888888888888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHhC
Q 010642 349 VGDWEKVKELREFMNEK 365 (505)
Q Consensus 349 ~g~~~~a~~~~~~m~~~ 365 (505)
.|++++|...+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 88888888888877654
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.33 E-value=7.9e-06 Score=64.43 Aligned_cols=60 Identities=8% Similarity=-0.073 Sum_probs=24.2
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHH
Q 010642 99 WNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISE 161 (505)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 161 (505)
|..+...+...|++++|+..|++... . .+.+...+..+...+...|++++|.+.+..+.+
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 74 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIE--L-NPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC 74 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH--c-CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh
Confidence 33444444444444444444444433 0 112233333344444444444444444444443
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.33 E-value=5.9e-06 Score=65.53 Aligned_cols=97 Identities=13% Similarity=0.050 Sum_probs=87.8
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010642 269 NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLY 346 (505)
Q Consensus 269 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 346 (505)
+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++.+..|.+...+..+..+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4567788889999999999999999998 5555 6778899999999999999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHHHHHHhC
Q 010642 347 SSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 347 ~~~g~~~~a~~~~~~m~~~ 365 (505)
...|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999988764
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.31 E-value=3e-06 Score=69.36 Aligned_cols=94 Identities=15% Similarity=0.028 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010642 168 MNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSAC 244 (505)
Q Consensus 168 ~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 244 (505)
...+..+...+.+.|++++|...|++.. ..+...|..+..+|...|++++|+..|++...... .+...+..+..++
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence 3444445555555555555555555442 23444555555555566666666666665554321 1334455555556
Q ss_pred hccCCHHHHHHHHHHHhh
Q 010642 245 SHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~ 262 (505)
...|++++|...|+...+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666665554
No 150
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.31 E-value=0.00015 Score=67.52 Aligned_cols=211 Identities=9% Similarity=0.024 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC-CHHHHHHHHhcCCC---CChhHHHHHHHHHHHC-C-ChhHHHHHHH
Q 010642 47 MGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFE-KSFEACKLFDEIPQ---RDTVAWNVLISCYIRN-Q-RTRDALCLFD 120 (505)
Q Consensus 47 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~~~~ 120 (505)
++|+++.+.++..+ +.+..+|+.--..+...| +++++++.++.+.. ++..+|+.-...+.+. + ++++++++++
T Consensus 71 e~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 71 ERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 45555555555554 234445555555555555 36666666655543 2445555555444444 4 5566666666
Q ss_pred HchhccCCCCCCHHHHHHHHHHHHhccChH--------HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC-------HH
Q 010642 121 NLNREESGCKPDDVTCLLVLQACAHLGALE--------FGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGS-------LG 185 (505)
Q Consensus 121 ~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~--------~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~-------~~ 185 (505)
++.. .-+-|..+|+.-.-...+.+.++ ++.+..+.+++.. +.|...|+.....+.+.++ ++
T Consensus 150 k~L~---~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 150 GSLL---PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHTS---SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHH---hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHH
Confidence 6544 12223444444333333333333 5556666666554 4455556555555555554 45
Q ss_pred HHHHHHhcCC---CCChhHHHHHHHHHHhCCCh--------------------HHHHHHHHHHHHCC-----CCCCHHHH
Q 010642 186 MAFEVFKGMP---EKDVVSWSAMISGLAMNGHG--------------------RDAIESFGAMQRAG-----VFPDDQTF 237 (505)
Q Consensus 186 ~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~~~g-----~~p~~~t~ 237 (505)
++.+.+++.. ..|...|+-+-..+.+.|+. ....+...++...+ -.+....+
T Consensus 226 eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 226 DELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 5666655443 23555565555555554443 12222222222211 12455666
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhh
Q 010642 238 TGVLSACSHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (505)
..++..|...|+.++|.++++.+.+
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 6777777777777888888887765
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.31 E-value=5.6e-06 Score=71.36 Aligned_cols=171 Identities=8% Similarity=-0.067 Sum_probs=96.4
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 010642 175 IAMYSKCGSLGMAFEVFKGMPEK---DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVD 251 (505)
Q Consensus 175 ~~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 251 (505)
+......|++++|.+.++.-.+. ....+..+...+...|++++|+..|++..... |+...+... ..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------ILL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hHH
Confidence 33444456666666665543321 33456666667777777777777777776532 211100000 000
Q ss_pred HHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 010642 252 EGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLI 329 (505)
Q Consensus 252 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 329 (505)
.- ... .....+..+..+|.+.|++++|...+++. ...| +...|..+..++...|+++.|...++++.
T Consensus 81 ~~---~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 81 DK---KKN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HH---HHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HH---HHH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 00 000 01245666777778888888888888776 3334 56788888888999999999999999999
Q ss_pred HhcCCCCchHHHHHHHHHhCCCHHHHH-HHHHHHHhCC
Q 010642 330 ELKAQESGDYVLLLNLYSSVGDWEKVK-ELREFMNEKG 366 (505)
Q Consensus 330 ~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~~ 366 (505)
+..|.+...+..+..++...++.+++. ..+..|...+
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999988888888888888888777776 5555554433
No 152
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.30 E-value=0.00013 Score=67.52 Aligned_cols=228 Identities=10% Similarity=0.012 Sum_probs=128.7
Q ss_pred HCCChh-HHHHHHHHchhccCCCCCCHHH-HHHHHHHHHhccC----------hHHHHHHHHHHHHcCCCCchhHHHHHH
Q 010642 108 RNQRTR-DALCLFDNLNREESGCKPDDVT-CLLVLQACAHLGA----------LEFGEKIHRYISEHGYGSKMNLCNSLI 175 (505)
Q Consensus 108 ~~g~~~-~A~~~~~~m~~~~~~~~pd~~t-~~~ll~~~~~~~~----------~~~a~~i~~~~~~~~~~~~~~~~~~l~ 175 (505)
+.|.+. +|++++..+.. +.|+..| |+.--..+...+. ++++..+++.+.... |-+..+|+.-.
T Consensus 41 ~~~e~s~eaL~~t~~~L~----~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~ 115 (331)
T 3dss_A 41 QAGELDESVLELTSQILG----ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRC 115 (331)
T ss_dssp HTTCCSHHHHHHHHHHHT----TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHH----HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 444444 67777777755 4454433 3322222222221 566677777777664 55677777766
Q ss_pred HHHHhcC--CHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--
Q 010642 176 AMYSKCG--SLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGH-GRDAIESFGAMQRAGVFPDDQTFTGVLSACSHC-- 247 (505)
Q Consensus 176 ~~y~~~g--~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-- 247 (505)
.++.+.| .++++..+++++. .+|..+|+.-.-.+...|. ++++++.+.++.+..+. |...|+.....+.+.
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSC
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhh
Confidence 6666777 3777777777765 3466677766666667777 47788888887775433 555555444333332
Q ss_pred ------------CCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhc-----------CChHHHHHHHHHC-CCCCCHH
Q 010642 248 ------------GLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRA-----------GLLDQAYQLITSM-GVKPDST 303 (505)
Q Consensus 248 ------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~-~~~p~~~ 303 (505)
+.++++++.+...... .+-|...|+-+-..+.+. +.++++++.++++ ...||.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~- 271 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN- 271 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred ccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-
Confidence 3466677777766652 223444555444444443 3456666666666 444543
Q ss_pred HHHHHHH-----HHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHH
Q 010642 304 IWRTLLG-----ACRIHKHVTLGERVIEHLIELKAQESGDYVLLLN 344 (505)
Q Consensus 304 ~~~~ll~-----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 344 (505)
.|..+-. +....|..++....+.++.+++|....-|.-|..
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 2322111 1123455666677777777777766555554443
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.30 E-value=8.3e-06 Score=62.99 Aligned_cols=101 Identities=14% Similarity=0.037 Sum_probs=44.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcC
Q 010642 239 GVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHK 316 (505)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 316 (505)
.+...+...|++++|...+++.... .+.+...+..+...+.+.|++++|...+++. ...| +...+..+..++...|
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 3333444444444444444444331 1112333344444444444444444444443 1122 2344444555555555
Q ss_pred chhHHHHHHHHHHHhcCCCCchHHH
Q 010642 317 HVTLGERVIEHLIELKAQESGDYVL 341 (505)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~~~~~~~~ 341 (505)
++++|...+++..+..|.++..+..
T Consensus 87 ~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (118)
T 1elw_A 87 RFEEAKRTYEEGLKHEANNPQLKEG 111 (118)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 5555555555555555544444333
No 154
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.30 E-value=7.8e-06 Score=65.46 Aligned_cols=97 Identities=7% Similarity=-0.089 Sum_probs=76.2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010642 269 NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLY 346 (505)
Q Consensus 269 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 346 (505)
+...+..+...+...|++++|...|++. ...| +...|..+...+...|+++.|...++++.+..|.++..+..+..+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4556667777777778888887777776 3333 4667788888888888888888888888888888888888888888
Q ss_pred HhCCCHHHHHHHHHHHHhC
Q 010642 347 SSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 347 ~~~g~~~~a~~~~~~m~~~ 365 (505)
...|++++|...+++..+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 8888888888888887653
No 155
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.29 E-value=3.8e-06 Score=65.98 Aligned_cols=95 Identities=11% Similarity=-0.054 Sum_probs=82.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHh
Q 010642 271 HHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSS 348 (505)
Q Consensus 271 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 348 (505)
..+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++.+..|.++..+..+..+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45666777888999999999999888 4445 577888888999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhC
Q 010642 349 VGDWEKVKELREFMNEK 365 (505)
Q Consensus 349 ~g~~~~a~~~~~~m~~~ 365 (505)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988754
No 156
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.29 E-value=5.6e-06 Score=78.04 Aligned_cols=119 Identities=8% Similarity=-0.038 Sum_probs=61.2
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC----------------HHHHHHHHHHHHhccChHHHHHHHHH
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD----------------DVTCLLVLQACAHLGALEFGEKIHRY 158 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd----------------~~t~~~ll~~~~~~~~~~~a~~i~~~ 158 (505)
+...|..+...|.+.|++++|+..|++... +.|+ ...|..+..++.+.|++++|...+++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~----~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 221 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS----WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345677777777777777777777777765 2232 24444445555555555555555555
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHH
Q 010642 159 ISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDA 218 (505)
Q Consensus 159 ~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A 218 (505)
+++.. +.+..++..+..+|...|++++|...|++.. ..+...+..+...+.+.|+.++|
T Consensus 222 al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 222 ALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 55443 3344444444444444444444444444332 12333444444444444444444
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.25 E-value=9.5e-06 Score=62.64 Aligned_cols=97 Identities=12% Similarity=0.053 Sum_probs=86.3
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 010642 270 IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYS 347 (505)
Q Consensus 270 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 347 (505)
...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++.+..|.++..+..+..+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 446777888899999999999999988 3344 67788889999999999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHHHHHhCC
Q 010642 348 SVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 348 ~~g~~~~a~~~~~~m~~~~ 366 (505)
..|++++|.+.+++..+.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHHHHHHHHHcC
Confidence 9999999999999887653
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=1.2e-05 Score=65.23 Aligned_cols=94 Identities=11% Similarity=0.000 Sum_probs=54.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHC-CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010642 271 HHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD----STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNL 345 (505)
Q Consensus 271 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 345 (505)
..+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...+++..+..|.++..+..+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 108 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA 108 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHH
Confidence 34444555555555555555555555 44444 34555555556666666666666666666666555566666666
Q ss_pred HHhCCCHHHHHHHHHHHHh
Q 010642 346 YSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 346 ~~~~g~~~~a~~~~~~m~~ 364 (505)
|...|++++|...+++..+
T Consensus 109 ~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 109 LEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666665544
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.25 E-value=6.8e-06 Score=68.40 Aligned_cols=93 Identities=14% Similarity=0.013 Sum_probs=49.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhC
Q 010642 272 HYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSV 349 (505)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 349 (505)
.+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++..|.+...|..+..+|...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3444444455555555555555544 2222 3445555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHh
Q 010642 350 GDWEKVKELREFMNE 364 (505)
Q Consensus 350 g~~~~a~~~~~~m~~ 364 (505)
|++++|...|++..+
T Consensus 93 g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 93 ADYKGAKEAYEKGIE 107 (164)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 555555555555543
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.24 E-value=1.6e-06 Score=74.78 Aligned_cols=144 Identities=6% Similarity=-0.090 Sum_probs=72.1
Q ss_pred HHHHHhCCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC--------------HH
Q 010642 72 MDLYSTFEKSFEACKLFDEIPQR---DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD--------------DV 134 (505)
Q Consensus 72 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd--------------~~ 134 (505)
+......|+++.+.+.++.-.+. ....|..+...+.+.|++++|+..|++.... ..-.|+ ..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF-FIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhcccccchhhHHHHHHHHHHH
Confidence 33444556666666666544331 3456777778888888888888888887661 001111 14
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHh
Q 010642 135 TCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAM 211 (505)
Q Consensus 135 t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~ 211 (505)
.+..+..++...|++++|...+..+++.. +.+..++..+..+|...|++++|...|++.. ..+...+..+...+..
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 45555555555666666666666555543 3344455555555555555555555555432 1233344444444444
Q ss_pred CCChHH
Q 010642 212 NGHGRD 217 (505)
Q Consensus 212 ~g~~~~ 217 (505)
.++.++
T Consensus 169 ~~~~~~ 174 (198)
T 2fbn_A 169 LKEARK 174 (198)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 443333
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.23 E-value=6e-06 Score=65.48 Aligned_cols=93 Identities=9% Similarity=-0.020 Sum_probs=68.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCc-------hHHHH
Q 010642 272 HYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESG-------DYVLL 342 (505)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~l 342 (505)
.+..+...+.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..+++.++..|.+.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4555667777777777777777776 4444 4667777888888888888888888888887765443 56667
Q ss_pred HHHHHhCCCHHHHHHHHHHHHh
Q 010642 343 LNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 343 ~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
..+|...|++++|.+.|++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 7788888888888888887654
No 162
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.22 E-value=1.4e-05 Score=62.96 Aligned_cols=107 Identities=8% Similarity=-0.107 Sum_probs=61.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHH
Q 010642 236 TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACR 313 (505)
Q Consensus 236 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 313 (505)
.+......+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|.+.+++. .+.| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444445555556666666666555542 1223455555666666666666666666655 3333 3556666667777
Q ss_pred hcCchhHHHHHHHHHHHhc------CCCCchHHHHHH
Q 010642 314 IHKHVTLGERVIEHLIELK------AQESGDYVLLLN 344 (505)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~ 344 (505)
..|++++|...++++.+.. |.+......+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 7777777777777777766 555444444433
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.21 E-value=1.9e-05 Score=65.64 Aligned_cols=107 Identities=13% Similarity=-0.014 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHH
Q 010642 234 DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGA 311 (505)
Q Consensus 234 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 311 (505)
...+..+...+...|++++|+..|++..+. .+.+...|..+..+|.+.|++++|...|++. .+.| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 345666666777777777777777777653 2234566777777888888888888888776 3344 47788888999
Q ss_pred HHhcCchhHHHHHHHHHHHhcCCCCchHHHH
Q 010642 312 CRIHKHVTLGERVIEHLIELKAQESGDYVLL 342 (505)
Q Consensus 312 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 342 (505)
+...|++++|...++++++..|.+...+...
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 119 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKR 119 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 9999999999999999999999888765443
No 164
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.20 E-value=1e-05 Score=65.53 Aligned_cols=101 Identities=10% Similarity=-0.079 Sum_probs=59.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHh
Q 010642 237 FTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRI 314 (505)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 314 (505)
+..+...+.+.|++++|...|+..... .+.+...|..+..+|.+.|++++|...|++. ...| +...|..+..++..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 334444555566666666666665542 1223445555666666666666666666655 2223 34556666667777
Q ss_pred cCchhHHHHHHHHHHHhcCCCCchH
Q 010642 315 HKHVTLGERVIEHLIELKAQESGDY 339 (505)
Q Consensus 315 ~g~~~~a~~~~~~~~~~~~~~~~~~ 339 (505)
.|++++|...++++.+..|.++...
T Consensus 99 ~g~~~~A~~~~~~al~~~p~~~~~~ 123 (142)
T 2xcb_A 99 LGDLDGAESGFYSARALAAAQPAHE 123 (142)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCGGGH
T ss_pred cCCHHHHHHHHHHHHHhCCCCcchH
Confidence 7777777777777777776655443
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=2.9e-05 Score=62.84 Aligned_cols=107 Identities=8% Similarity=-0.078 Sum_probs=58.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC----cchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHH
Q 010642 236 TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN----IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLL 309 (505)
Q Consensus 236 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 309 (505)
.+..+...+...|++++|...|++..+ ..|+ ...+..+...|...|++++|.+.+++. ...| +...|..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 344444444444455555544444442 1222 334445555555555566555555554 2223 455666666
Q ss_pred HHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010642 310 GACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNL 345 (505)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 345 (505)
.++...|++++|...+++..+..|.+...+..+...
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 677777777777777777777777665555444443
No 166
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.17 E-value=2e-05 Score=62.43 Aligned_cols=26 Identities=12% Similarity=-0.051 Sum_probs=14.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 010642 202 WSAMISGLAMNGHGRDAIESFGAMQR 227 (505)
Q Consensus 202 ~~~li~~~~~~g~~~~A~~~~~~m~~ 227 (505)
|..+..+|...|++++|++.|++...
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44445555556666666666665554
No 167
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.13 E-value=0.00073 Score=62.59 Aligned_cols=216 Identities=12% Similarity=0.062 Sum_probs=152.7
Q ss_pred hccCh-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC----------HHHHHHHHhcCC---CCChhHHHHHHHHHH
Q 010642 145 HLGAL-EFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGS----------LGMAFEVFKGMP---EKDVVSWSAMISGLA 210 (505)
Q Consensus 145 ~~~~~-~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~----------~~~A~~~~~~m~---~~~~~~~~~li~~~~ 210 (505)
+.|.+ ++|....+.++..+ |.+..+|+.--......|. ++++..+++.+. .++..+|+.-.-.+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 44544 47899999998875 5556666654444443333 678888888775 457788888888888
Q ss_pred hCCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhc----
Q 010642 211 MNGH--GRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGL-VDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRA---- 283 (505)
Q Consensus 211 ~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---- 283 (505)
+.|+ +++++.+++++.+...+ |...|+.-...+...|. ++++++.+..+.+. -+-|...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcc
Confidence 8884 89999999999986544 66777766666777787 68999999999974 234566666666555554
Q ss_pred ----------CChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhc-----------CchhHHHHHHHHHHHhcCCCCchHH
Q 010642 284 ----------GLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIH-----------KHVTLGERVIEHLIELKAQESGDYV 340 (505)
Q Consensus 284 ----------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~ 340 (505)
+.++++++.+.+. ...| |...|+-+-..+... +.++++++.++++.+..|++.-.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 4578888888887 3445 677787655555444 4688999999999999998855544
Q ss_pred HHHHHH---HhCCCHHHHHHHHHHHHh
Q 010642 341 LLLNLY---SSVGDWEKVKELREFMNE 364 (505)
Q Consensus 341 ~l~~~~---~~~g~~~~a~~~~~~m~~ 364 (505)
.++... ...|..+++...+.++.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 443322 245777788888888775
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=2.6e-05 Score=76.15 Aligned_cols=118 Identities=7% Similarity=-0.096 Sum_probs=62.3
Q ss_pred hccCCHHHHHHHHHHHhhhc---CCcCC-cchHHHHHHHHHhcCChHHHHHHHHHC-------CCCCC-HHHHHHHHHHH
Q 010642 245 SHCGLVDEGMMFLDRMSKDF---GILPN-IHHYGCVVDLLGRAGLLDQAYQLITSM-------GVKPD-STIWRTLLGAC 312 (505)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~ 312 (505)
...|+.+++..+++...... +..+. ..++..+...|...|++++|..++++. .-+|. ..++..++..|
T Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (434)
T 4b4t_Q 106 QVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVY 185 (434)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 34455666665555544311 11111 234455566666666666666666554 11121 33555666666
Q ss_pred HhcCchhHHHHHHHHHHHhc---CCC----CchHHHHHHHHHhCCCHHHHHHHHHHH
Q 010642 313 RIHKHVTLGERVIEHLIELK---AQE----SGDYVLLLNLYSSVGDWEKVKELREFM 362 (505)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m 362 (505)
...|+++.|..++++..... +.+ ...+..++..+...|++++|...+.+.
T Consensus 186 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 186 HKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 66777777777766665543 111 123445555666667777766665554
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.13 E-value=2.2e-05 Score=62.79 Aligned_cols=100 Identities=8% Similarity=-0.165 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHH
Q 010642 233 DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLG 310 (505)
Q Consensus 233 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 310 (505)
+...+..+...+...|++++|...|+..... .+.+...+..+...|...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3445555556666666666666666665542 1223455566666666666666666666665 2233 4556667777
Q ss_pred HHHhcCchhHHHHHHHHHHHhcCC
Q 010642 311 ACRIHKHVTLGERVIEHLIELKAQ 334 (505)
Q Consensus 311 ~~~~~g~~~~a~~~~~~~~~~~~~ 334 (505)
++...|+++.|...++++.+..|.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 777777777777777777776654
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.13 E-value=1.2e-05 Score=61.47 Aligned_cols=96 Identities=9% Similarity=-0.052 Sum_probs=50.8
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC---CHHHHHHHHHHHH
Q 010642 238 TGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP---DSTIWRTLLGACR 313 (505)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~ 313 (505)
..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 33444444455555555555554432 1123334445555555555555555555554 2223 3555666666666
Q ss_pred hc-CchhHHHHHHHHHHHhcCCC
Q 010642 314 IH-KHVTLGERVIEHLIELKAQE 335 (505)
Q Consensus 314 ~~-g~~~~a~~~~~~~~~~~~~~ 335 (505)
.. |++++|.+.++++.+..|++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHhCCHHHHHHHHHHHhhcccCC
Confidence 66 66666666666666666544
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.12 E-value=1.4e-05 Score=63.13 Aligned_cols=91 Identities=16% Similarity=0.102 Sum_probs=58.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHC-CCCCC-H---HHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC---CchHHHHHHHH
Q 010642 275 CVVDLLGRAGLLDQAYQLITSM-GVKPD-S---TIWRTLLGACRIHKHVTLGERVIEHLIELKAQE---SGDYVLLLNLY 346 (505)
Q Consensus 275 ~li~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~ 346 (505)
.+...+.+.|++++|.+.|++. ...|+ . ..+..+..++...|++++|...++++.+..|.+ +..+..+..+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3445556666666666666665 22222 1 355556666777777777777777777777666 45566777777
Q ss_pred HhCCCHHHHHHHHHHHHhC
Q 010642 347 SSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 347 ~~~g~~~~a~~~~~~m~~~ 365 (505)
...|++++|...++++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 7777777777777776653
No 172
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.08 E-value=4.4e-05 Score=75.61 Aligned_cols=118 Identities=6% Similarity=-0.091 Sum_probs=68.0
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 010642 174 LIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLV 250 (505)
Q Consensus 174 l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 250 (505)
+...|.+.|++++|.+.|++.. ..+..+|..+..+|.+.|++++|++.+++..+... -+...+..+..++...|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 3445566677777777776553 23456666777777777777777777777666421 1345666666667777777
Q ss_pred HHHHHHHHHHhhhcCCcCCcchHHHHHHH--HHhcCChHHHHHHHH
Q 010642 251 DEGMMFLDRMSKDFGILPNIHHYGCVVDL--LGRAGLLDQAYQLIT 294 (505)
Q Consensus 251 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 294 (505)
++|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777666531 1123334444433 556666666666666
No 173
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.07 E-value=3.2e-05 Score=76.15 Aligned_cols=129 Identities=6% Similarity=-0.024 Sum_probs=91.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcC-------------CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-
Q 010642 236 TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILP-------------NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP- 300 (505)
Q Consensus 236 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-------------~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p- 300 (505)
.+..+...+.+.|++++|...|++..+.....+ ....|..+..+|.+.|++++|+..+++. .+.|
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 344444555555555555555555554211110 1367788888899999999999999887 4444
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHH-HHHHHHh
Q 010642 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKE-LREFMNE 364 (505)
Q Consensus 301 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~~ 364 (505)
+...|..+..++...|++++|...|++++++.|.+...+..+..++.+.|+++++.+ .++.|..
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577888999999999999999999999999999999999999999999999988764 4555543
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.06 E-value=3.4e-05 Score=60.69 Aligned_cols=61 Identities=5% Similarity=-0.051 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 010642 201 SWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (505)
.|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++...
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 34455555555566666666555555432 12334444555555555555555555555543
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.05 E-value=2.3e-05 Score=64.25 Aligned_cols=93 Identities=13% Similarity=0.086 Sum_probs=56.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHC----CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcC--C----CCc
Q 010642 272 HYGCVVDLLGRAGLLDQAYQLITSM----GVKPD----STIWRTLLGACRIHKHVTLGERVIEHLIELKA--Q----ESG 337 (505)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~----~~~ 337 (505)
.+..+...+...|++++|.+.+++. ...++ ...+..+...+...|++++|...+++..+..+ . ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444445555555555555555443 00011 33555666667777777777777777665531 1 123
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 338 DYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 338 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
.+..+...|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566788888888888888888877654
No 176
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.05 E-value=2e-05 Score=64.12 Aligned_cols=62 Identities=8% Similarity=-0.079 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHh-------cCCCCchH----HHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 303 TIWRTLLGACRIHKHVTLGERVIEHLIEL-------KAQESGDY----VLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 303 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
..|..+..++...|++++|+..+++.++. +|++...| .....++...|++++|+..|++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 38888888899999999999999999998 89888888 9999999999999999999998764
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.04 E-value=2.4e-05 Score=61.63 Aligned_cols=95 Identities=11% Similarity=0.026 Sum_probs=75.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC-------CchHHH
Q 010642 271 HHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQE-------SGDYVL 341 (505)
Q Consensus 271 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~ 341 (505)
..+..+...+...|++++|...|++. ...| +...+..+...+...|++++|...++++.+..|.+ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34566677777788888888888776 2223 56677888888888999999999999988887655 667888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 342 LLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 342 l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
+..+|...|++++|.+.+++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999988764
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.04 E-value=1.2e-05 Score=79.61 Aligned_cols=116 Identities=10% Similarity=-0.018 Sum_probs=69.0
Q ss_pred HHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhH
Q 010642 243 ACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTL 320 (505)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 320 (505)
.+.+.|++++|.+.|++..+. .+.+...|..+..+|.+.|++++|.+.+++. .+.| +...|..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 344556666666666666542 1223455666666666666666666666665 3334 35566666677777777777
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHH--HHhCCCHHHHHHHHH
Q 010642 321 GERVIEHLIELKAQESGDYVLLLNL--YSSVGDWEKVKELRE 360 (505)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 360 (505)
|.+.++++.+..|.+...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777777777666666666555 666677777776665
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.03 E-value=7.2e-05 Score=58.92 Aligned_cols=96 Identities=6% Similarity=-0.060 Sum_probs=55.4
Q ss_pred HHHHhccCCHHHHHHHHHHHhhhcCCcCCc---chHHHHHHHHHhcCChHHHHHHHHHC-CCCCC----HHHHHHHHHHH
Q 010642 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNI---HHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD----STIWRTLLGAC 312 (505)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~ 312 (505)
...+...|++++|...|+.+.+.. +.+. ..+..+...+.+.|++++|...|++. ...|+ ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 344455566666666666655431 1112 24455555666666666666666655 22232 44566666677
Q ss_pred HhcCchhHHHHHHHHHHHhcCCCCch
Q 010642 313 RIHKHVTLGERVIEHLIELKAQESGD 338 (505)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~~~~~~ 338 (505)
...|++++|...++++.+..|.++..
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 77777777777777777777665443
No 180
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.02 E-value=0.00023 Score=69.37 Aligned_cols=120 Identities=7% Similarity=-0.106 Sum_probs=53.9
Q ss_pred hCCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcC----CcchHHHHHHHHH
Q 010642 211 MNGHGRDAIESFGAMQR----AGVFPD-DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILP----NIHHYGCVVDLLG 281 (505)
Q Consensus 211 ~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~ 281 (505)
..|++++|..++++... .+..+. ..++..+...+...|++++|..+++.+.....-.. ....+..++..|.
T Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
T 4b4t_Q 107 VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH 186 (434)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 34445555555544432 122222 23344455555555555555555555443211111 1234455555555
Q ss_pred hcCChHHHHHHHHHC-------CCCCC--HHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 010642 282 RAGLLDQAYQLITSM-------GVKPD--STIWRTLLGACRIHKHVTLGERVIEHLIE 330 (505)
Q Consensus 282 ~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 330 (505)
..|++++|..++++. +..|. ...+..+...+...++++.|...+.+..+
T Consensus 187 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 187 KLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 555655555555444 11111 12333444444555566666555555443
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.01 E-value=2.5e-05 Score=64.05 Aligned_cols=97 Identities=8% Similarity=-0.008 Sum_probs=51.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcC----CcchHHHHHHHHHhcCChHHHHHHHHHC-------CCCC-CHH
Q 010642 236 TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILP----NIHHYGCVVDLLGRAGLLDQAYQLITSM-------GVKP-DST 303 (505)
Q Consensus 236 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~ 303 (505)
++..+...+...|++++|...+++..+...-.+ ....+..+...+...|++++|.+.+++. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 344444455555555555555555443210000 1234445555566666666666665554 1111 133
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 304 IWRTLLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 304 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
++..+...+...|++++|...+++..+..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 55666677777888888888887776654
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.00 E-value=7.5e-06 Score=63.76 Aligned_cols=82 Identities=16% Similarity=0.073 Sum_probs=47.8
Q ss_pred cCChHHHHHHHHHC-CC---CC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHH
Q 010642 283 AGLLDQAYQLITSM-GV---KP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKE 357 (505)
Q Consensus 283 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 357 (505)
.|++++|+..|++. .. .| +...|..+...+...|++++|...++++.+..|.++..+..+..+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 35555555555555 33 13 234555566666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHh
Q 010642 358 LREFMNE 364 (505)
Q Consensus 358 ~~~~m~~ 364 (505)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 183
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.96 E-value=3.7e-05 Score=60.24 Aligned_cols=87 Identities=6% Similarity=-0.083 Sum_probs=36.0
Q ss_pred HHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 010642 102 LISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKC 181 (505)
Q Consensus 102 li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~ 181 (505)
+...+.+.|++++|+..|++... .-+.+...+..+..++...|++++|...++++++.. |.+..++..+..+|.+.
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 33444444444444444444433 011133334444444444444444444444444432 22333444444444444
Q ss_pred CCHHHHHHHHh
Q 010642 182 GSLGMAFEVFK 192 (505)
Q Consensus 182 g~~~~A~~~~~ 192 (505)
|++++|...|+
T Consensus 99 g~~~~A~~~~~ 109 (121)
T 1hxi_A 99 HNANAALASLR 109 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 44444444443
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.93 E-value=6.1e-05 Score=71.84 Aligned_cols=90 Identities=7% Similarity=-0.036 Sum_probs=77.5
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010642 269 NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLY 346 (505)
Q Consensus 269 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 346 (505)
+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|...++++.++.|.+...+..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3567888888999999999999999988 6566 4678888999999999999999999999999999988888999998
Q ss_pred HhCCCHHHHHHH
Q 010642 347 SSVGDWEKVKEL 358 (505)
Q Consensus 347 ~~~g~~~~a~~~ 358 (505)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 888888777543
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.91 E-value=4.2e-05 Score=63.35 Aligned_cols=64 Identities=3% Similarity=-0.009 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 302 STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 302 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
...|..+..++...|+++.|+..++++++.+|.++..|..+..+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4577778888889999999999999999999988889999999999999999999998887654
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.88 E-value=3.5e-05 Score=72.64 Aligned_cols=145 Identities=10% Similarity=-0.050 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHH
Q 010642 201 SWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLL 280 (505)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 280 (505)
.|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ . ...|..+..+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHHH
Confidence 4556667777788888888888877653 344331 22233333332211 1 12566677777
Q ss_pred HhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHH-HhCCCHHHHHH
Q 010642 281 GRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLY-SSVGDWEKVKE 357 (505)
Q Consensus 281 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~ 357 (505)
.+.|++++|...+++. ...| +...|..+..++...|++++|...|+++.+..|.+...+..|.... ...+..+.+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888887777776 3334 4667777777788888888888888888777777777777666663 34556677777
Q ss_pred HHHHHHhC
Q 010642 358 LREFMNEK 365 (505)
Q Consensus 358 ~~~~m~~~ 365 (505)
+|++|...
T Consensus 321 ~~~~~l~~ 328 (338)
T 2if4_A 321 MYKGIFKG 328 (338)
T ss_dssp --------
T ss_pred HHHHhhCC
Confidence 77777544
No 187
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.87 E-value=0.0001 Score=72.62 Aligned_cols=124 Identities=9% Similarity=0.009 Sum_probs=97.3
Q ss_pred HHhccCCHHHHHHHHHHHhhhcC--CcC----CcchHHHHHHHHHhcCChHHHHHHHHHC---------CCCCC-HHHHH
Q 010642 243 ACSHCGLVDEGMMFLDRMSKDFG--ILP----NIHHYGCVVDLLGRAGLLDQAYQLITSM---------GVKPD-STIWR 306 (505)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~ 306 (505)
.+...|++++|..++++..+... +.| ...+++.|...|...|++++|+.++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35678999999998888765321 112 2457888999999999999999988876 34455 44789
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHh-----cCCCCc---hHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 307 TLLGACRIHKHVTLGERVIEHLIEL-----KAQESG---DYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 307 ~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
.|...|...|++++|+.+++++++. +|+.+. +...|..++...|++++|+.++.++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998763 566554 34577888899999999999999998754
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.82 E-value=2.1e-05 Score=61.12 Aligned_cols=90 Identities=10% Similarity=0.062 Sum_probs=55.6
Q ss_pred cCCHHHHHHHHHHHhhhcC--CcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHH
Q 010642 247 CGLVDEGMMFLDRMSKDFG--ILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGE 322 (505)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 322 (505)
.|++++|+..|++..+. + .+.+...+..+...|.+.|++++|.+.|++. ...| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45566666666666542 1 1223455666666677777777777777666 3333 3556677777777778888888
Q ss_pred HHHHHHHHhcCCCCc
Q 010642 323 RVIEHLIELKAQESG 337 (505)
Q Consensus 323 ~~~~~~~~~~~~~~~ 337 (505)
..+++..+..|.++.
T Consensus 82 ~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 82 ELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhCCCcHH
Confidence 888887777776654
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.80 E-value=3.5e-05 Score=72.59 Aligned_cols=114 Identities=4% Similarity=-0.082 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010642 235 QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRI 314 (505)
Q Consensus 235 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~ 314 (505)
..+..+...+.+.|++++|...|++.... .|+.. .+...|+.+++...+. ...|..+..++.+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~ 242 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 34566777888999999999999988763 23321 1223344444444332 2377888899999
Q ss_pred cCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 315 HKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 315 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
.|++++|+..++++++..|.+...|..+..+|...|++++|...|++..+.
T Consensus 243 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987654
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.80 E-value=5e-05 Score=62.86 Aligned_cols=67 Identities=12% Similarity=0.030 Sum_probs=52.0
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCC
Q 010642 270 IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQES 336 (505)
Q Consensus 270 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 336 (505)
...|..+..+|.+.|++++|...+++. .+.| +...|..+..++...|++++|...+++++++.|.++
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 346677777788888888888887776 3344 466788888888888888888888888888888775
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.78 E-value=0.00078 Score=67.94 Aligned_cols=167 Identities=8% Similarity=-0.013 Sum_probs=115.7
Q ss_pred HHHHHHHhcCC---CCChhHHHHHHHHHHhCCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--C
Q 010642 185 GMAFEVFKGMP---EKDVVSWSAMISGLAMNGH----------GRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCG--L 249 (505)
Q Consensus 185 ~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g--~ 249 (505)
++|.+.++++. ..+..+|+.--.++...|+ ++++++.++++.+...+ +..+|..-...+.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccccc
Confidence 44555555443 2233455555555555454 67788888887775433 4556666666666777 6
Q ss_pred HHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcC-ChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhc-----------
Q 010642 250 VDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAG-LLDQAYQLITSM-GVKP-DSTIWRTLLGACRIH----------- 315 (505)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~----------- 315 (505)
++++...++++.+. .+-+...|+.-.-.+.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 125 ~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 68888888888764 2334556666666667777 788888888887 5555 566777766665553
Q ss_pred ---CchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHH
Q 010642 316 ---KHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEK 354 (505)
Q Consensus 316 ---g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 354 (505)
+.++++.+.+++++..+|.+..+|..+...+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 668999999999999999999999999999988887554
No 192
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.73 E-value=0.00038 Score=68.47 Aligned_cols=123 Identities=9% Similarity=-0.084 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHhccCCHHHHHHHHHHHhhhc
Q 010642 199 VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPD--------------DQTFTGVLSACSHCGLVDEGMMFLDRMSKDF 264 (505)
Q Consensus 199 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 264 (505)
...|..+...|.+.|++++|+..|++..+...... ...|..+..++.+.|++++|+..+++..+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL- 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 34677777888888888888888888876322111 467888888899999999999999998863
Q ss_pred CCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchhHHHH
Q 010642 265 GILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHVTLGER 323 (505)
Q Consensus 265 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~ 323 (505)
.+.+...|..+..+|...|++++|...|++. .+.|+ ...+..+..++...++.+++.+
T Consensus 347 -~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 347 -DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp -STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2335677888889999999999999999888 66664 4477777788888888777664
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.72 E-value=0.00024 Score=67.70 Aligned_cols=119 Identities=8% Similarity=-0.064 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhcCCC-------------------CChhHHHHHHHHHHHCCChhHHHHHHHHchhccC
Q 010642 67 LMTTLMDLYSTFEKSFEACKLFDEIPQ-------------------RDTVAWNVLISCYIRNQRTRDALCLFDNLNREES 127 (505)
Q Consensus 67 ~~~~li~~~~~~g~~~~A~~~~~~~~~-------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 127 (505)
.+..+...|.+.|++++|++.|++..+ .+..+|+.+..+|.+.|++++|+..+++..+ .
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~ 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE--I 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--h
Confidence 355556666677777777766665442 1345677777777777777777777777765 1
Q ss_pred CCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 010642 128 GCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFE 189 (505)
Q Consensus 128 ~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~ 189 (505)
-+.+...+..+..++...|++++|...++++.+.. +.+..++..+..++.+.++.+++.+
T Consensus 303 -~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 -DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 12345666777777777777777777777777764 4456666667777766666666554
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.66 E-value=0.00028 Score=52.86 Aligned_cols=65 Identities=18% Similarity=0.154 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 301 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
+...|..+...+...|++++|+..++++++..|.++..|..+..+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56788889999999999999999999999999999999999999999999999999999987653
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.65 E-value=0.00044 Score=56.23 Aligned_cols=98 Identities=11% Similarity=0.021 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC-------------HHHHHHHHHHHHhccChHHHHHHHHHHHHcCC
Q 010642 98 AWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD-------------DVTCLLVLQACAHLGALEFGEKIHRYISEHGY 164 (505)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-------------~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~ 164 (505)
.+......+.+.|++++|+..|++..+ +.|+ ...|..+..++.+.|++++|...+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~----l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l-- 86 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME----ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY-- 86 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH----HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh----hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 345556666777777777777777655 2222 114444455555555555555555544442
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhc---CCCCChhHH----HHHHHHHHhCCChHHHHHHHHHHHH
Q 010642 165 GSKMNLCNSLIAMYSKCGSLGMAFEVFKG---MPEKDVVSW----SAMISGLAMNGHGRDAIESFGAMQR 227 (505)
Q Consensus 165 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~---m~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 227 (505)
|++ +...+...| .....++...|++++|+..|++..+
T Consensus 87 --------------------------~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 87 --------------------------FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp --------------------------HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------------------hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 000 011223455 6666677777777777777777654
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.60 E-value=0.00029 Score=69.38 Aligned_cols=119 Identities=11% Similarity=-0.051 Sum_probs=62.0
Q ss_pred hccChHHHHHHHHHHHHc-----C--CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC----------CC-hhHHHHHH
Q 010642 145 HLGALEFGEKIHRYISEH-----G--YGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE----------KD-VVSWSAMI 206 (505)
Q Consensus 145 ~~~~~~~a~~i~~~~~~~-----~--~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~----------~~-~~~~~~li 206 (505)
..|++++|..++++.++. | .+....+++.|..+|...|++++|+.++++..+ |+ ..+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 345555555555444432 1 111234455555555556666555555554321 11 23466666
Q ss_pred HHHHhCCChHHHHHHHHHHHH-----CCC-CCCH-HHHHHHHHHHhccCCHHHHHHHHHHHhhh
Q 010642 207 SGLAMNGHGRDAIESFGAMQR-----AGV-FPDD-QTFTGVLSACSHCGLVDEGMMFLDRMSKD 263 (505)
Q Consensus 207 ~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (505)
..|...|++++|..++++... .|. .|+. .+...+-.++...+.+++|+.+|.++++.
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665542 121 1222 23445555666677777777777777653
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.59 E-value=0.00027 Score=54.39 Aligned_cols=78 Identities=12% Similarity=0.044 Sum_probs=62.6
Q ss_pred HHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 288 QAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 288 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
+|.+.|++. ...| +...|..+...+...|++++|...++++.+..|.+...|..+..+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355556555 4444 46678888888888999999999999999888888888889999999999999999998887653
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.58 E-value=0.0003 Score=51.17 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=58.2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 010642 270 IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYS 347 (505)
Q Consensus 270 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 347 (505)
...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...+++..+..|.++..+..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345566666777777777777777766 2233 46677777788888888888888888888888887777777777766
Q ss_pred hCC
Q 010642 348 SVG 350 (505)
Q Consensus 348 ~~g 350 (505)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.56 E-value=8.8e-05 Score=56.53 Aligned_cols=95 Identities=13% Similarity=0.026 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCc------hh
Q 010642 96 TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSK------MN 169 (505)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~------~~ 169 (505)
...|..+...+...|++++|+..|++.... .+.+...+..+..++...|++++|.+.++++++.. +.+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA---QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHH
Confidence 445666666677777777777777766551 22345566666666667777777777777666643 222 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcC
Q 010642 170 LCNSLIAMYSKCGSLGMAFEVFKGM 194 (505)
Q Consensus 170 ~~~~l~~~y~~~g~~~~A~~~~~~m 194 (505)
++..+..++...|+.+.|...|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 4455555555555555555555444
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.00011 Score=56.00 Aligned_cols=89 Identities=12% Similarity=-0.011 Sum_probs=61.0
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC------CchHHH
Q 010642 270 IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQE------SGDYVL 341 (505)
Q Consensus 270 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~ 341 (505)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++.+..|.+ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 345566667777777777777777766 3333 46677777788888888888888888888888776 445556
Q ss_pred HHHHHHhCCCHHHHHHH
Q 010642 342 LLNLYSSVGDWEKVKEL 358 (505)
Q Consensus 342 l~~~~~~~g~~~~a~~~ 358 (505)
+..++...|+++.|...
T Consensus 84 ~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHhHhhhHhH
Confidence 66666666655554443
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.43 E-value=0.001 Score=53.17 Aligned_cols=113 Identities=11% Similarity=0.029 Sum_probs=61.2
Q ss_pred cchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----CC
Q 010642 4 AYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYST----FE 79 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g 79 (505)
+..-.+++++|+..|++..+.|. |+. . +...+...+.++.|.+.+++..+.| +...+..|..+|.. .+
T Consensus 4 G~g~~~d~~~A~~~~~~aa~~g~-~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~ 75 (138)
T 1klx_A 4 GGTVKKDLKKAIQYYVKACELNE-MFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKK 75 (138)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTC-TTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC
T ss_pred CcCCccCHHHHHHHHHHHHcCCC-Hhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCc
Confidence 33444556677777777766652 222 2 4444445555666666666666554 44555555555555 55
Q ss_pred CHHHHHHHHhcCCC-CChhHHHHHHHHHHH----CCChhHHHHHHHHchh
Q 010642 80 KSFEACKLFDEIPQ-RDTVAWNVLISCYIR----NQRTRDALCLFDNLNR 124 (505)
Q Consensus 80 ~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 124 (505)
+.++|.+.|++..+ .+..++..|...|.. .+++++|+..|++..+
T Consensus 76 d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 76 DLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 55555555555433 344555555555555 4555555555555544
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.42 E-value=0.00016 Score=58.75 Aligned_cols=86 Identities=13% Similarity=0.115 Sum_probs=68.0
Q ss_pred HhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCc----------hhHHHHHHHHHHHhcCCCCchHHHHHHHHHh
Q 010642 281 GRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKH----------VTLGERVIEHLIELKAQESGDYVLLLNLYSS 348 (505)
Q Consensus 281 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 348 (505)
.+.+++++|.+.+++. ...| +...|..+..++...++ +++|+..|++.++++|.+..+|..+.++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4455677777777766 3444 46677767777766665 4699999999999999999999999999998
Q ss_pred CC-----------CHHHHHHHHHHHHhCC
Q 010642 349 VG-----------DWEKVKELREFMNEKG 366 (505)
Q Consensus 349 ~g-----------~~~~a~~~~~~m~~~~ 366 (505)
.| ++++|.+.|++..+.+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 75 8999999999987753
No 203
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.41 E-value=0.0052 Score=61.95 Aligned_cols=166 Identities=9% Similarity=-0.043 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC----------cHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC--
Q 010642 12 EEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCS----------LMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFE-- 79 (505)
Q Consensus 12 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 79 (505)
++|++.++.++..++. +...|+.--.++...++ ++++...++.+++.. +.+..+|+.-...+.+.+
T Consensus 46 eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 4556666666664322 33445544444444444 666666666666655 335566666666666666
Q ss_pred CHHHHHHHHhcCCC---CChhHHHHHHHHHHHCC-ChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhc---------
Q 010642 80 KSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQ-RTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHL--------- 146 (505)
Q Consensus 80 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~--------- 146 (505)
++++++..++++.+ +|-.+|+.-...+.+.| .++++++.++++.+ . -+-|...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--~-~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--R-NFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--T-TCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH--H-CCCCccHHHHHHHHHHhhccccccccc
Confidence 55666666666543 35566666666666666 66666666666654 1 223445555544444332
Q ss_pred -----cChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 010642 147 -----GALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGS 183 (505)
Q Consensus 147 -----~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~ 183 (505)
+.++++.+.+..+++.. |.+..+|+-+-..+.+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 33455556665555553 4455555555555555554
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.30 E-value=0.0023 Score=46.32 Aligned_cols=81 Identities=12% Similarity=0.049 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 010642 96 TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLI 175 (505)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~ 175 (505)
...|..+...+...|++++|+..|++... . .+.+...+..+..++...|++++|...++++.+.. +.+..++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~ 84 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALE--L-DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHh--c-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 34555566666666666666666666655 1 12244555566666666666666666666666553 33455555555
Q ss_pred HHHHh
Q 010642 176 AMYSK 180 (505)
Q Consensus 176 ~~y~~ 180 (505)
.++.+
T Consensus 85 ~~~~~ 89 (91)
T 1na3_A 85 NAKQK 89 (91)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55443
No 205
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.27 E-value=0.0012 Score=64.11 Aligned_cols=116 Identities=9% Similarity=0.066 Sum_probs=86.3
Q ss_pred HHHHHhcCChHHHHHHHHHC---------CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHh-----cCCCC---ch
Q 010642 277 VDLLGRAGLLDQAYQLITSM---------GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIEL-----KAQES---GD 338 (505)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~---~~ 338 (505)
+..+.+.|++++|++++++. +..|+ ..+++.|..+|...|++++|+.+++++++. ++..+ .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566778888988888766 12222 457888999999999999999999998764 34443 36
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHH
Q 010642 339 YVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLK 410 (505)
Q Consensus 339 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 410 (505)
++.|...|...|++++|..++++..+--.. .-...||...++...|.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 788999999999999999999987642110 112368999888888888776654
No 206
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.22 E-value=0.024 Score=59.88 Aligned_cols=130 Identities=13% Similarity=0.068 Sum_probs=86.7
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChh
Q 010642 34 SFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTR 113 (505)
Q Consensus 34 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 113 (505)
..++..+...|..+.|.++.+ +. ..-.......|++++|.++.+.+. +...|..|...+.+.++++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~---------~~---~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP---------DQ---DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC---------CH---HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCC---------Cc---chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHH
Confidence 556666666677777665442 11 111344567888999988887764 5678899999999999999
Q ss_pred HHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 010642 114 DALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKG 193 (505)
Q Consensus 114 ~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 193 (505)
.|.+.|.++.. |..+...+...++.+...++-+.+...| -++....+|.+.|++++|.++|.+
T Consensus 699 ~A~~~y~~~~d-----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 699 LAIEAFTNAHD-----------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHTC-----------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHccC-----------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999988754 3445555556777777666666555554 134445556777777777777543
Q ss_pred C
Q 010642 194 M 194 (505)
Q Consensus 194 m 194 (505)
+
T Consensus 762 ~ 762 (814)
T 3mkq_A 762 S 762 (814)
T ss_dssp T
T ss_pred c
Confidence 3
No 207
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.20 E-value=0.0017 Score=49.77 Aligned_cols=79 Identities=11% Similarity=-0.133 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcC
Q 010642 12 EEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEI 91 (505)
Q Consensus 12 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 91 (505)
++|+..|++..+... .+...+..+...+...|++++|...++.+++.. +.+...+..+...|...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 356777777776542 255667777777777777777777777777765 335566666777777777777777776654
Q ss_pred C
Q 010642 92 P 92 (505)
Q Consensus 92 ~ 92 (505)
.
T Consensus 80 l 80 (115)
T 2kat_A 80 L 80 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 208
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.19 E-value=0.003 Score=46.39 Aligned_cols=69 Identities=7% Similarity=-0.023 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHhcCc---hhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 010642 300 PDSTIWRTLLGACRIHKH---VTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQ 368 (505)
Q Consensus 300 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 368 (505)
+|...+..+..++...++ .++|..++++.++.+|.++.....+...+.+.|++++|...|+++.+..-.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 467777777777765554 799999999999999999999999999999999999999999999886543
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.19 E-value=0.0042 Score=49.53 Aligned_cols=63 Identities=13% Similarity=0.004 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHh----cCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHh----CCCHHHHHHHHHHHHhCC
Q 010642 302 STIWRTLLGACRI----HKHVTLGERVIEHLIELKAQESGDYVLLLNLYSS----VGDWEKVKELREFMNEKG 366 (505)
Q Consensus 302 ~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 366 (505)
...+..|...|.. .+++++|...+++..+.+ ++..+..|..+|.. .+++++|.+.+++..+.|
T Consensus 57 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 3344444444443 445555555555554442 23445555555555 555566665555555544
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.11 E-value=0.00048 Score=55.88 Aligned_cols=86 Identities=8% Similarity=0.044 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCC----------hHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhc-
Q 010642 249 LVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGL----------LDQAYQLITSM-GVKPD-STIWRTLLGACRIH- 315 (505)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~- 315 (505)
.+++|.+.++...+. -+.+...|..+..++...++ +++|+..|++. .+.|+ ...|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 344455555544432 12233444444444444443 34677777666 45553 55777777777765
Q ss_pred ----------CchhHHHHHHHHHHHhcCCCC
Q 010642 316 ----------KHVTLGERVIEHLIELKAQES 336 (505)
Q Consensus 316 ----------g~~~~a~~~~~~~~~~~~~~~ 336 (505)
|++++|++.|+++++++|.+.
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 589999999999999999874
No 211
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.03 E-value=0.0025 Score=47.55 Aligned_cols=61 Identities=8% Similarity=-0.014 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHh
Q 010642 200 VSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMS 261 (505)
Q Consensus 200 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (505)
..|..+...|.+.|++++|+..|++..+.... +...|..+..++...|++++|...|++..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444444444432111 22334444444444444444444444443
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.01 E-value=0.002 Score=62.29 Aligned_cols=83 Identities=7% Similarity=-0.011 Sum_probs=65.9
Q ss_pred hcCChHHHHHHHHHC---------CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHh-----cCCCC---chHHHHH
Q 010642 282 RAGLLDQAYQLITSM---------GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIEL-----KAQES---GDYVLLL 343 (505)
Q Consensus 282 ~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~---~~~~~l~ 343 (505)
..|++++|+.++++. +-.|+ ..+++.|..+|...|++++|+.+++++++. ++..+ .+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357788888887765 22344 357899999999999999999999998764 34444 3688999
Q ss_pred HHHHhCCCHHHHHHHHHHHHh
Q 010642 344 NLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 344 ~~~~~~g~~~~a~~~~~~m~~ 364 (505)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998754
No 213
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.83 E-value=0.025 Score=43.58 Aligned_cols=140 Identities=11% Similarity=0.067 Sum_probs=102.8
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHH
Q 010642 210 AMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQA 289 (505)
Q Consensus 210 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 289 (505)
.-.|..++..++..+.... .+..-||.++--....-+-+-..++++.+-+-+.+ ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 3467777777877777653 25566777776666666766667777666543222 235666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 010642 290 YQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQ 368 (505)
Q Consensus 290 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 368 (505)
..-+-.++. +.......+......|+-+.-.++...+....++++.....+.++|.+.|+..+|.+++.+.-++|++
T Consensus 81 i~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666666542 44556677788889999999999999987777888899999999999999999999999999999985
No 214
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.77 E-value=0.079 Score=55.89 Aligned_cols=153 Identities=13% Similarity=0.113 Sum_probs=80.7
Q ss_pred HHHCCChhHHHH-HHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 010642 106 YIRNQRTRDALC-LFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSL 184 (505)
Q Consensus 106 ~~~~g~~~~A~~-~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~ 184 (505)
....+++++|.+ ++..+. +......++..+.+.|.++.|.++.+. . ..-...+...|++
T Consensus 609 ~~~~~~~~~a~~~~l~~i~--------~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~ 668 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE--------GKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQL 668 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC--------CHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCH
T ss_pred HHHhCCHHHHHHHHHhcCC--------chHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCH
Confidence 345666666655 432221 011225555556666666666654321 1 1113345567777
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhc
Q 010642 185 GMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDF 264 (505)
Q Consensus 185 ~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 264 (505)
++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.+ |..+...+...|+.+...++-+.....
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~- 736 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT- 736 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 77777776663 556777777777777777777777776643 222333333355555444433333321
Q ss_pred CCcCCcchHHHHHHHHHhcCChHHHHHHHHHC
Q 010642 265 GILPNIHHYGCVVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 265 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 296 (505)
| -++.-..+|.+.|++++|.+++.++
T Consensus 737 ~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 737 G------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1 2233334444555555555555554
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.73 E-value=0.017 Score=46.17 Aligned_cols=92 Identities=15% Similarity=0.115 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHHHhcC---chhHHHHHHHHHHHhc-C-CCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCce
Q 010642 299 KPDSTIWRTLLGACRIHK---HVTLGERVIEHLIELK-A-QESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGC 373 (505)
Q Consensus 299 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 373 (505)
.++..+.-.+..++.+.+ +.++++.+++.+.+.+ | .+...+..|.-+|.+.|++++|.+.++.+.+..
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie------- 101 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE------- 101 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------
Confidence 357777777777777777 7779999999988887 5 346678888899999999999999999887632
Q ss_pred eEEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCccc
Q 010642 374 STIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVA 416 (505)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p 416 (505)
|...++......+.+.+.+.|++-
T Consensus 102 -------------------P~n~QA~~Lk~~ie~~~~kdgl~G 125 (152)
T 1pc2_A 102 -------------------PQNNQAKELERLIDKAMKKDGLVG 125 (152)
T ss_dssp -------------------TTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred -------------------CCCHHHHHHHHHHHHHHHHhhHHH
Confidence 233345555555666777777654
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.59 E-value=0.019 Score=55.53 Aligned_cols=99 Identities=10% Similarity=0.020 Sum_probs=74.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhhc--CCcCC----cchHHHHHHHHHhcCChHHHHHHHHHC---------CCCCC-HH
Q 010642 240 VLSACSHCGLVDEGMMFLDRMSKDF--GILPN----IHHYGCVVDLLGRAGLLDQAYQLITSM---------GVKPD-ST 303 (505)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~ 303 (505)
.+..+.+.|++++|..++++..+.. -+.|+ ..+++.|...|...|++++|+.++++. +..|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3555667889999999998887531 12222 356788888999999999999988876 34454 34
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHh-----cCCCCch
Q 010642 304 IWRTLLGACRIHKHVTLGERVIEHLIEL-----KAQESGD 338 (505)
Q Consensus 304 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~ 338 (505)
+++.|...|...|++++|+.+++++.+. +|+.+.+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 7888999999999999999999997763 5665543
No 217
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.22 Score=40.91 Aligned_cols=104 Identities=13% Similarity=0.057 Sum_probs=76.7
Q ss_pred HHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHH
Q 010642 73 DLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFG 152 (505)
Q Consensus 73 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a 152 (505)
.....+|+++.|.++.+.+ .+...|..|.......|+++-|...|.+... +..+.-.|...|+.+.-
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS-----------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----------HHHHHHHHHHHTCHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----------HHHHHHHHHHhCCHHHH
Confidence 4456789999999888776 4677899999999999999999999998855 44555556677887777
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 010642 153 EKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP 195 (505)
Q Consensus 153 ~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 195 (505)
.++-+.....| -++.....+.-.|+++++.++|.+..
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 76666665555 14455555666788888888776554
No 218
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.51 E-value=0.83 Score=46.09 Aligned_cols=79 Identities=14% Similarity=0.040 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHh
Q 010642 66 QLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAH 145 (505)
Q Consensus 66 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~ 145 (505)
..-+.-+..+++.+++......+.. +..+...-.....+....|+..+|......+-. .| ......+..++..+.+
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~--~~-~~~p~~c~~l~~~~~~ 148 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWL--TG-KSQPNACDKLFSVWRA 148 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHS--CS-SCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh--CC-CCCcHHHHHHHHHHHH
Confidence 4445566677788899998887776 444666666677788888998888777777655 33 2234455666666665
Q ss_pred ccC
Q 010642 146 LGA 148 (505)
Q Consensus 146 ~~~ 148 (505)
.|.
T Consensus 149 ~g~ 151 (618)
T 1qsa_A 149 SGK 151 (618)
T ss_dssp TTC
T ss_pred CCC
Confidence 543
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.51 E-value=0.05 Score=50.63 Aligned_cols=35 Identities=14% Similarity=0.224 Sum_probs=20.3
Q ss_pred CChhHHHHHHHHHH--hCCC---hHHHHHHHHHHHHCCCCCC
Q 010642 197 KDVVSWSAMISGLA--MNGH---GRDAIESFGAMQRAGVFPD 233 (505)
Q Consensus 197 ~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~g~~p~ 233 (505)
.+..+|...+.+.. ..+. ..+|..+|++..+. .|+
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~ 231 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPE 231 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCC
Confidence 35566666665433 2222 36778888887773 454
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.48 E-value=0.0064 Score=58.79 Aligned_cols=86 Identities=10% Similarity=0.061 Sum_probs=67.0
Q ss_pred ccCCHHHHHHHHHHHhhhc--CCcCC----cchHHHHHHHHHhcCChHHHHHHHHHC---------CCCCCH-HHHHHHH
Q 010642 246 HCGLVDEGMMFLDRMSKDF--GILPN----IHHYGCVVDLLGRAGLLDQAYQLITSM---------GVKPDS-TIWRTLL 309 (505)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll 309 (505)
+.|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578899998888776531 12222 356888999999999999999988877 345554 4789999
Q ss_pred HHHHhcCchhHHHHHHHHHHHh
Q 010642 310 GACRIHKHVTLGERVIEHLIEL 331 (505)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~ 331 (505)
..|...|++++|+.+++++.+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 221
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.45 E-value=0.0085 Score=44.13 Aligned_cols=62 Identities=16% Similarity=0.126 Sum_probs=30.8
Q ss_pred HHHHhcCChHHHHHHHHHC-CCCC-CHH-HHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchH
Q 010642 278 DLLGRAGLLDQAYQLITSM-GVKP-DST-IWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDY 339 (505)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 339 (505)
..+.+.|++++|.+.+++. ...| +.. .|..+..++...|++++|...++++.+..|.+...+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3444555555555555554 2222 233 444455555555555555555555555555544433
No 222
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.42 E-value=0.017 Score=42.44 Aligned_cols=86 Identities=13% Similarity=0.081 Sum_probs=58.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhhcCCcCCcc-hHHHHHHHHHhcCChHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcC
Q 010642 240 VLSACSHCGLVDEGMMFLDRMSKDFGILPNIH-HYGCVVDLLGRAGLLDQAYQLITSM-GVKPDS-TIWRTLLGACRIHK 316 (505)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g 316 (505)
....+...|++++|...+++..+. .+.+.. .+..+...|...|++++|.+.|++. ...|+. ..+.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 455677888889999888888763 223455 7778888888889999998888887 334432 22211 4
Q ss_pred chhHHHHHHHHHHHhcCCC
Q 010642 317 HVTLGERVIEHLIELKAQE 335 (505)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~~ 335 (505)
.+.++...+++.....|.+
T Consensus 76 ~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHhccCccc
Confidence 5666666666666655544
No 223
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.26 E-value=0.052 Score=50.52 Aligned_cols=68 Identities=10% Similarity=0.058 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHHH
Q 010642 234 DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDSTI 304 (505)
Q Consensus 234 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 304 (505)
..+|..+...+...|++++|...+++...- + |+...|..+...+.-.|++++|.+.|++. .+.|...+
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~L-n--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGIDL-E--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 334443333333345555555555554442 1 34333444444444455555555555444 33344433
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.19 Score=41.19 Aligned_cols=127 Identities=13% Similarity=0.137 Sum_probs=70.5
Q ss_pred HHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010642 178 YSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFL 257 (505)
Q Consensus 178 y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 257 (505)
...+|+++.|.++-+.+ .+...|..+.....+.|+++-|.+.|.+..+ |..+.--|.-.|+.+.-.++-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 45566677666666554 3556677777777777777777777766542 233333444456665544443
Q ss_pred HHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010642 258 DRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHL 328 (505)
Q Consensus 258 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 328 (505)
+....+ | -++.-...+.-.|+++++.++|.+.+.-|....+ ...+|-.+.|.++.+.+
T Consensus 84 ~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~------A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 84 NIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAV------AKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHH------HHHTTCHHHHHHHHHHT
T ss_pred HHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHH------HHHcCcHHHHHHHHHHh
Confidence 333322 1 2444455566677777777777776543322211 22355566666665544
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.87 E-value=0.048 Score=39.78 Aligned_cols=76 Identities=11% Similarity=0.051 Sum_probs=51.9
Q ss_pred CCcchHHHHHHHHHhcCC---hHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHH
Q 010642 268 PNIHHYGCVVDLLGRAGL---LDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLL 342 (505)
Q Consensus 268 p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 342 (505)
++...+..+..++...++ .++|..+|++. ...| +...+..+...+...|++++|+..|+++.+..|+ ......+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~i 82 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVTI 82 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHH
Confidence 455666667776654444 67888888777 4445 4556667777788888888888888888888877 3334444
Q ss_pred HH
Q 010642 343 LN 344 (505)
Q Consensus 343 ~~ 344 (505)
..
T Consensus 83 ~~ 84 (93)
T 3bee_A 83 IE 84 (93)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.64 E-value=0.057 Score=40.31 Aligned_cols=67 Identities=9% Similarity=-0.040 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHC------C---CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHH
Q 010642 274 GCVVDLLGRAGLLDQAYQLITSM------G---VKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYV 340 (505)
Q Consensus 274 ~~li~~~~~~g~~~~A~~~~~~~------~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 340 (505)
..|...+.+.|+++.|..+|+.. + -.+...++..|..++.+.|+++.|...++++.+..|.+..+..
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 34445555555555555555544 0 1124567778888888888888888888888888888765533
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.32 E-value=0.069 Score=47.70 Aligned_cols=86 Identities=10% Similarity=0.139 Sum_probs=67.8
Q ss_pred HHHHHHHHHC-CCCCC---HHHHHHHHHHHHh-----cCchhHHHHHHHHHHHhcCCC-CchHHHHHHHHHhC-CCHHHH
Q 010642 287 DQAYQLITSM-GVKPD---STIWRTLLGACRI-----HKHVTLGERVIEHLIELKAQE-SGDYVLLLNLYSSV-GDWEKV 355 (505)
Q Consensus 287 ~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~a 355 (505)
..|...+++. .+.|+ ...|..|...|.. -|+.++|.+.|++.+++.|.. ..+++.....++.. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4555556655 55666 4577778888877 499999999999999999964 88999999999885 999999
Q ss_pred HHHHHHHHhCCCCCCCc
Q 010642 356 KELREFMNEKGLQTTPG 372 (505)
Q Consensus 356 ~~~~~~m~~~~~~~~~~ 372 (505)
.+.+++........+|+
T Consensus 260 ~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 260 DEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 99999998877664343
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.83 E-value=0.1 Score=41.66 Aligned_cols=70 Identities=10% Similarity=-0.066 Sum_probs=44.6
Q ss_pred CCcchHHHHHHHHHhcC---ChHHHHHHHHHC-CCC-C--CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCc
Q 010642 268 PNIHHYGCVVDLLGRAG---LLDQAYQLITSM-GVK-P--DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESG 337 (505)
Q Consensus 268 p~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 337 (505)
++..+...+.-++++.+ +.+++..+|+.. ... | +...+..|.-++.+.|++++|.+.++.+++.+|.+..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 44444444555555555 334555555544 112 3 2345556677788999999999999999999998753
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.54 E-value=0.24 Score=38.01 Aligned_cols=65 Identities=9% Similarity=-0.045 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHhcCchhH---HHHHHHHHHHhc-C-CCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 300 PDSTIWRTLLGACRIHKHVTL---GERVIEHLIELK-A-QESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 300 p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
|+..+--.+..++.+..+... ++.+++.+.+.+ | ........|.-++.+.|++++|.+.++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444444444443333 555555555544 2 1223445566666666666666666666654
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.32 E-value=0.23 Score=36.85 Aligned_cols=65 Identities=14% Similarity=-0.033 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc-------CCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELK-------AQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 301 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
+....-.|...+...|+++.|...++.+.+.. ++....+..|..+|.+.|+++.|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45556678888999999999999999988763 233457889999999999999999999998764
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.26 E-value=1.4 Score=34.03 Aligned_cols=143 Identities=10% Similarity=0.074 Sum_probs=98.0
Q ss_pred HHHHHH--HHhcCCHHHHHHHHhcCCC-CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 010642 172 NSLIAM--YSKCGSLGMAFEVFKGMPE-KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCG 248 (505)
Q Consensus 172 ~~l~~~--y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 248 (505)
..|+++ ..-.|.+++..++..+... .+..-||-+|.-....-+-+-..++++.+-. -.| ....|
T Consensus 9 kkLmeAK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~ 75 (172)
T 1wy6_A 9 RKLMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQ 75 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCS
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhh
Confidence 344443 3456888888888877654 3555667666655555555555555554422 112 23445
Q ss_pred CHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHH
Q 010642 249 LVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM--GVKPDSTIWRTLLGACRIHKHVTLGERVIE 326 (505)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 326 (505)
++......+-.+- .+......-++.+...|+-++-.+++..+ ..+|++...-.+..+|.+.|+..+|.+++.
T Consensus 76 NlKrVi~C~~~~n------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 76 NLKSVVECGVINN------TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp CTHHHHHHHHHTT------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHhc------chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 5555555554442 25566777888899999999999999994 556788888899999999999999999999
Q ss_pred HHHHhcC
Q 010642 327 HLIELKA 333 (505)
Q Consensus 327 ~~~~~~~ 333 (505)
++.+.+.
T Consensus 150 ~AC~kG~ 156 (172)
T 1wy6_A 150 EACKKGE 156 (172)
T ss_dssp HHHHTTC
T ss_pred HHHHhhh
Confidence 9988774
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.81 E-value=0.53 Score=48.43 Aligned_cols=54 Identities=15% Similarity=-0.026 Sum_probs=50.1
Q ss_pred HHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 310 GACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
.-|...|+++.|..+.++.....|.+..+|..|..+|...|+|+.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 446778999999999999999999999999999999999999999999999884
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.80 E-value=0.47 Score=37.50 Aligned_cols=57 Identities=11% Similarity=-0.038 Sum_probs=39.0
Q ss_pred cCChHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHH
Q 010642 283 AGLLDQAYQLITSM---GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYV 340 (505)
Q Consensus 283 ~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 340 (505)
.++.++|.++|+.+ .-+- ...|-....--.++|++..|.+++.+.+.+.|.+.....
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 46777777777766 1111 666766666677888888888888888888876544433
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.78 E-value=0.62 Score=41.63 Aligned_cols=81 Identities=12% Similarity=0.063 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHcCCCC--chhHHHHHHHHHHh-----cCCHHHHHHHHhcCC--CC--ChhHHHHHHHHHHhC-CChHH
Q 010642 150 EFGEKIHRYISEHGYGS--KMNLCNSLIAMYSK-----CGSLGMAFEVFKGMP--EK--DVVSWSAMISGLAMN-GHGRD 217 (505)
Q Consensus 150 ~~a~~i~~~~~~~~~~~--~~~~~~~l~~~y~~-----~g~~~~A~~~~~~m~--~~--~~~~~~~li~~~~~~-g~~~~ 217 (505)
..|+..++++++.. +. +...|..|...|.+ -|+.++|.+.|++.. .| +..++......++.. |+.++
T Consensus 180 ~~A~a~lerAleLD-P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 180 HAAVMMLERACDLW-PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHC-TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34444444444442 11 23455555555555 255555655555543 22 245555555555553 66666
Q ss_pred HHHHHHHHHHCCCC
Q 010642 218 AIESFGAMQRAGVF 231 (505)
Q Consensus 218 A~~~~~~m~~~g~~ 231 (505)
+.+.+++.......
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 66666666665544
No 235
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.06 E-value=0.0029 Score=60.35 Aligned_cols=237 Identities=9% Similarity=0.033 Sum_probs=160.4
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHH
Q 010642 64 DSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQAC 143 (505)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~ 143 (505)
.+.+|..|..++...+.+.+|++.|=+ ..|+..|..+|.+..+.|.+++-+..+...++ ..-.|. .=+.++-+|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk--~~ke~~--IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARK--KARESY--VETELIFAL 126 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTST--TCCSTT--TTHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--Hhcccc--cHHHHHHHH
Confidence 456788888888888888888776643 34666788889999999999999888887766 433343 335788888
Q ss_pred HhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC------------------------CCh
Q 010642 144 AHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE------------------------KDV 199 (505)
Q Consensus 144 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~------------------------~~~ 199 (505)
++.+++.+-+++. -.|+..-...+.+-+...|.++.|.-+|..+.. .++
T Consensus 127 Ak~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 8888876654443 245665667788888888888888888877652 367
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHH
Q 010642 200 VSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDL 279 (505)
Q Consensus 200 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 279 (505)
.+|..+-.+|...+.+.-|.-.--.+. +.||. ...++..|...|.+++-+.+++.-.. .-......|+-|.-.
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniI---vhade--L~elv~~YE~~G~f~ELIsLlEaglg--lErAHmGmFTELaIL 272 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAIL 272 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTT--STTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhc---ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhC--CCchhHHHHHHHHHH
Confidence 789999899998888776644433333 22222 23466678888888888888877762 223455677777777
Q ss_pred HHhcCChHHHHHHHHHC----CCCC------CHHHHHHHHHHHHhcCchhHH
Q 010642 280 LGRAGLLDQAYQLITSM----GVKP------DSTIWRTLLGACRIHKHVTLG 321 (505)
Q Consensus 280 ~~~~g~~~~A~~~~~~~----~~~p------~~~~~~~ll~~~~~~g~~~~a 321 (505)
|++- ++++.++.++.. .++. ....|.-++-.|....+++.|
T Consensus 273 YsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA 323 (624)
T 3lvg_A 273 YSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 323 (624)
T ss_dssp HHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHH
T ss_pred HHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHH
Confidence 7765 566666665544 2211 223466666666666666554
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.01 E-value=0.0053 Score=58.54 Aligned_cols=204 Identities=13% Similarity=0.065 Sum_probs=101.2
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHH
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEA 84 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 84 (505)
....|+..+|++.|-+. -|+..|..++.++.+.|.+++-...+..+++. ..++.+=+.|+.+|++.+++.+-
T Consensus 64 qL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~el 135 (624)
T 3lvg_A 64 QLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAEL 135 (624)
T ss_dssp TTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTT
T ss_pred HHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHH
Confidence 34455666666554211 14556777777777777777777766655443 33455556777777777765543
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhc-----------------c-CCCCCCHHHHHHHHHHHHhc
Q 010642 85 CKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNRE-----------------E-SGCKPDDVTCLLVLQACAHL 146 (505)
Q Consensus 85 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----------------~-~~~~pd~~t~~~ll~~~~~~ 146 (505)
++++.. ||..-...+..-+...|.++.|.-+|..+... + ..-.-+..||-.+-.+|...
T Consensus 136 Eefl~~---~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~ 212 (624)
T 3lvg_A 136 EEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDG 212 (624)
T ss_dssp TSTTSC---CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHS
T ss_pred HHHHcC---CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCc
Confidence 333221 22222233333333333333333333322110 0 00011233444444444444
Q ss_pred ------------------------------cChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--CHHHHHHHHh-c
Q 010642 147 ------------------------------GALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCG--SLGMAFEVFK-G 193 (505)
Q Consensus 147 ------------------------------~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g--~~~~A~~~~~-~ 193 (505)
|.+++-..+++...... .....+++-|.-.|+|-. ++-+=.++|. +
T Consensus 213 ~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY~PeKlmEHlklf~sr 291 (624)
T 3lvg_A 213 KEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR 291 (624)
T ss_dssp CTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSSCTTHHHHHHTTSSSS
T ss_pred hHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 44444444444433211 335566777777777653 2222222222 2
Q ss_pred CCCC-------ChhHHHHHHHHHHhCCChHHHHH
Q 010642 194 MPEK-------DVVSWSAMISGLAMNGHGRDAIE 220 (505)
Q Consensus 194 m~~~-------~~~~~~~li~~~~~~g~~~~A~~ 220 (505)
+.-| ....|.-++-.|.+-.+++.|..
T Consensus 292 iNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 292 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp SCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred ccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 2222 44568888888888888776643
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.89 E-value=0.34 Score=38.26 Aligned_cols=56 Identities=13% Similarity=-0.027 Sum_probs=44.0
Q ss_pred hcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 010642 314 IHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQT 369 (505)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 369 (505)
..++.++|.++|+.+......-+..|......-.+.|+.+.|.+++.+....+.+|
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 34889999999999988743334566666777789999999999999988766554
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.40 E-value=0.48 Score=44.97 Aligned_cols=70 Identities=10% Similarity=-0.033 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh-----CCCCCCCce
Q 010642 304 IWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE-----KGLQTTPGC 373 (505)
Q Consensus 304 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~ 373 (505)
....++..+...|+++++...+..+...+|-+...|..|+.+|.+.|+..+|.+.|+...+ .|+.|.+..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3445667778889999999999999999999988999999999999999999999988743 588887653
No 239
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.36 E-value=4.3 Score=31.76 Aligned_cols=91 Identities=7% Similarity=0.032 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHhcC---chhHHHHHHHHHHHhcCCC-CchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCcee
Q 010642 299 KPDSTIWRTLLGACRIHK---HVTLGERVIEHLIELKAQE-SGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCS 374 (505)
Q Consensus 299 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 374 (505)
.|+..+--.+..++.+.. +..+++.+++.+....|.. ......|.-++.+.|++++|.+..+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e-------- 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE-------- 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC--------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--------
Confidence 455555444555555443 4567888888888876643 3455678888999999999999988887643
Q ss_pred EEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCcc
Q 010642 375 TIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYV 415 (505)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 415 (505)
|...++..+-..+.++|.+.|++
T Consensus 108 ------------------P~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 108 ------------------RNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp ------------------CCCHHHHHHHHHHHHHHHHTTTT
T ss_pred ------------------CCcHHHHHHHHHHHHHHHHhchh
Confidence 23334555555566777777764
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.34 E-value=1.3 Score=33.96 Aligned_cols=70 Identities=11% Similarity=-0.055 Sum_probs=38.9
Q ss_pred CCcchHHHHHHHHHhcCChHH---HHHHHHHC-CCC-C--CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCc
Q 010642 268 PNIHHYGCVVDLLGRAGLLDQ---AYQLITSM-GVK-P--DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESG 337 (505)
Q Consensus 268 p~~~~~~~li~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 337 (505)
|+..+-..+.-++.+..+..+ +..+++.. ... | .......|.-++.+.|+++.|.+.++.+++..|.+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence 333444444444444444333 44444444 111 2 1223344556777888888888888888888887754
No 241
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.91 E-value=2.3 Score=30.84 Aligned_cols=57 Identities=16% Similarity=0.298 Sum_probs=42.2
Q ss_pred HHHHHHHHC---CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHH
Q 010642 288 QAYQLITSM---GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLN 344 (505)
Q Consensus 288 ~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 344 (505)
+..+-++.+ .+-|++.+..+.+.+|++.+++..|.++++-++..-.+...+|-.++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 344444443 677899999999999999999999999999888766444455665543
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.78 E-value=26 Score=36.96 Aligned_cols=216 Identities=11% Similarity=-0.037 Sum_probs=117.9
Q ss_pred HHhCCCHHHHHHHHhcCCC----CC--hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC---H--HHHHHHH--H
Q 010642 75 YSTFEKSFEACKLFDEIPQ----RD--TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD---D--VTCLLVL--Q 141 (505)
Q Consensus 75 ~~~~g~~~~A~~~~~~~~~----~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd---~--~t~~~ll--~ 141 (505)
....|+.++++.+++.... .+ +..-..+.-+....|..++++.++.........+.-+ . ..-..+. -
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4567888888888887654 12 2233344556677777777888777665421111111 1 1111222 2
Q ss_pred HHHhccChHHHHHHHHHHHHcCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhcCCC-CC--hhHHHHHHHHHHhCCChH
Q 010642 142 ACAHLGALEFGEKIHRYISEHGYGSKM--NLCNSLIAMYSKCGSLGMAFEVFKGMPE-KD--VVSWSAMISGLAMNGHGR 216 (505)
Q Consensus 142 ~~~~~~~~~~a~~i~~~~~~~~~~~~~--~~~~~l~~~y~~~g~~~~A~~~~~~m~~-~~--~~~~~~li~~~~~~g~~~ 216 (505)
++...++ +++...+..++... .+.. ..-.+|...|.-.|+-+....++..+.+ .+ +.-.-++.-++...|+.+
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 2222333 34444444444432 1111 1223445556677887777777765432 22 222333445566789999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH---HHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHH
Q 010642 217 DAIESFGAMQRAGVFPDDQTFT---GVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLI 293 (505)
Q Consensus 217 ~A~~~~~~m~~~g~~p~~~t~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 293 (505)
.+..+.+.+... ..| ..-|. ++.-+|+..|+.....++++.+..+ ...++.....+.-++.-.|+.+.+.+++
T Consensus 542 ~~~~li~~L~~~-~dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 542 LADDLITKMLAS-DES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGHHHHHHHHHC-SCH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHHhC-CCH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 998888888763 122 22333 3445788899988888899988863 2233333333333444567776667776
Q ss_pred HHC
Q 010642 294 TSM 296 (505)
Q Consensus 294 ~~~ 296 (505)
+.+
T Consensus 618 ~~L 620 (963)
T 4ady_A 618 QLL 620 (963)
T ss_dssp TTG
T ss_pred HHH
Confidence 655
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.22 E-value=3.6 Score=29.88 Aligned_cols=63 Identities=14% Similarity=0.313 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHH
Q 010642 214 HGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVD 278 (505)
Q Consensus 214 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 278 (505)
+.-+..+-++.+....+.|+.....+.+.||.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 4456677777777788899999999999999999999999999999887533 33456777664
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.13 E-value=9.1 Score=41.97 Aligned_cols=163 Identities=11% Similarity=0.031 Sum_probs=93.0
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccCh
Q 010642 70 TLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGAL 149 (505)
Q Consensus 70 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~ 149 (505)
.++..+.+.+..+.|..+..-.+. +...--.+..+|...|++++|.+.|.+... ++..+..... ..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~---~~~~~~~l~~----------~~ 882 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL---VLYSHTSQFA----------VL 882 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC---SCTTCCCSCS----------SH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh---hhcccchhhh----------hh
Confidence 344445556666666665554443 333444566677788888888888877633 3322211000 00
Q ss_pred HHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhc----CCCCCh----hHHHHHHHHHHhCCChHHHH
Q 010642 150 EFGEKIHRYISEHG--YGSKMNLCNSLIAMYSKCGSLGMAFEVFKG----MPEKDV----VSWSAMISGLAMNGHGRDAI 219 (505)
Q Consensus 150 ~~a~~i~~~~~~~~--~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~----m~~~~~----~~~~~li~~~~~~g~~~~A~ 219 (505)
.. +..+.... ...-..-|..++..+.+.|.++.+.++-.. ....+. ..|..+..++...|++++|.
T Consensus 883 ~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 883 RE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp HH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred cc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 00 00111110 011234567777777777777766655432 222222 25888899999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 010642 220 ESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDE 252 (505)
Q Consensus 220 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 252 (505)
..+-.+.....+ ...+..|+...+..|..+.
T Consensus 959 ~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 959 VALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 999888765443 3456667777776666544
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.11 E-value=4.3 Score=31.27 Aligned_cols=67 Identities=9% Similarity=0.037 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHhc---CchhHHHHHHHHHHHhcCC-CCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 299 KPDSTIWRTLLGACRIH---KHVTLGERVIEHLIELKAQ-ESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 299 ~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
.|+..+--.+..++.+. .+...++.+++.+.+.+|. ....+..|.-++.+.|++++|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 34444433334444433 3455777888777776653 2445667788888888888888888877653
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.36 E-value=4.7 Score=41.50 Aligned_cols=126 Identities=11% Similarity=0.071 Sum_probs=78.6
Q ss_pred HHHHHHHHhCCC-HHHHHHHHhcCCCCCh--hH--HHHHHHHHHHCC-ChhHHHHHHHHchhc----cCCCCCCHH----
Q 010642 69 TTLMDLYSTFEK-SFEACKLFDEIPQRDT--VA--WNVLISCYIRNQ-RTRDALCLFDNLNRE----ESGCKPDDV---- 134 (505)
Q Consensus 69 ~~li~~~~~~g~-~~~A~~~~~~~~~~~~--~~--~~~li~~~~~~g-~~~~A~~~~~~m~~~----~~~~~pd~~---- 134 (505)
..|+..+...++ ++.|..+|+++.+.+. .+ ...+|..+.+.+ +--+|.+++.+..+. -...++...
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 444554555666 5778888888765332 22 223333333332 223455555444320 001222111
Q ss_pred -------HHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 010642 135 -------TCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP 195 (505)
Q Consensus 135 -------t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 195 (505)
.+..-...|...|+++.|.++-++.+... |.+-.+|..|..+|.+.|+++.|+-.++.++
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 12222345667899999999999999884 6778999999999999999999999999886
No 247
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.26 E-value=11 Score=39.63 Aligned_cols=258 Identities=9% Similarity=-0.021 Sum_probs=130.4
Q ss_pred HHccCCcHHHHHHHHHHHHhCCCCCh--hHHHHHHHHHHhCCCHHHHHHHHhcCCC-CC----------hhHHHHHHHHH
Q 010642 40 CMKFCSLMGGLQIHARVLRDGYQLDS--QLMTTLMDLYSTFEKSFEACKLFDEIPQ-RD----------TVAWNVLISCY 106 (505)
Q Consensus 40 ~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~----------~~~~~~li~~~ 106 (505)
....|+.++++.++...+..+-..+. .....+.-+...+|..+++...+..... ++ +..-.+|.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 34567777777666554321101222 2333344445566665566665544321 22 11223343444
Q ss_pred HHCCCh-hHHHHHHHHchhccCCCCCCH--HHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 010642 107 IRNQRT-RDALCLFDNLNREESGCKPDD--VTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGS 183 (505)
Q Consensus 107 ~~~g~~-~~A~~~~~~m~~~~~~~~pd~--~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~ 183 (505)
+-.|.- +++.+.+..+.. ..- +.. ..-.++...+...|+-+....++..+.+.. ..+..-..++.-+..-.|+
T Consensus 464 a~~GS~~eev~e~L~~~L~--dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLY--NDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHH--TCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHh--cCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC
Confidence 444432 356666666554 111 111 111123334456677777788877776532 2222222333333446677
Q ss_pred HHHHHHHHhcCC-CCChh-HHH---HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010642 184 LGMAFEVFKGMP-EKDVV-SWS---AMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLD 258 (505)
Q Consensus 184 ~~~A~~~~~~m~-~~~~~-~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 258 (505)
.+.+..+.+.+. ..+.. -|. ++..+|+-.|+.....+++..+.... ..+......+.-++...|+.+.+.++++
T Consensus 540 ~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 540 QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 777777766654 23333 233 33456777888777767888887642 2222222222224444566666677776
Q ss_pred HHhhhcCCcCCcchHHHHHHHHHhcCCh-HHHHHHHHHCCCCCCHHH
Q 010642 259 RMSKDFGILPNIHHYGCVVDLLGRAGLL-DQAYQLITSMGVKPDSTI 304 (505)
Q Consensus 259 ~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~p~~~~ 304 (505)
.+.+ ...|.+..-.++.-+....|.. .+|.+.+..+...+|..+
T Consensus 619 ~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~V 663 (963)
T 4ady_A 619 LLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFV 663 (963)
T ss_dssp TGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHH
T ss_pred HHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHH
Confidence 6654 2345555545555555555554 567777777733445443
No 248
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.10 E-value=18 Score=33.05 Aligned_cols=168 Identities=15% Similarity=0.145 Sum_probs=104.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHh
Q 010642 170 LCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESF----GAMQRAGVFPDDQTFTGVLSACS 245 (505)
Q Consensus 170 ~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 245 (505)
.|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++- +-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345566668889999999987542 233456677776665554 44456788888888888887776
Q ss_pred ccCCHH-HHHHHHHHHhh---hcCC--cCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchh
Q 010642 246 HCGLVD-EGMMFLDRMSK---DFGI--LPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVT 319 (505)
Q Consensus 246 ~~g~~~-~a~~~~~~~~~---~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 319 (505)
....-+ .=..+.+++.+ +.|- .-++.....+...|.+.+++.+|...|- .+..+.+..+..++.-+...+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCCc
Confidence 655311 11223333332 1132 2256677788899999999999998884 354444466655554444333221
Q ss_pred HHHHHHHHHHHhcCCCCchHH-HHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 320 LGERVIEHLIELKAQESGDYV-LLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
....|. -.+--|.-.++...|..+++...+
T Consensus 185 ---------------e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 ---------------TAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ---------------GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------cHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 222232 344556778899999988877654
No 249
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.71 E-value=19 Score=32.91 Aligned_cols=168 Identities=12% Similarity=0.044 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHH----HHchhccCCCCCCHHHHHHHHHH
Q 010642 67 LMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLF----DNLNREESGCKPDDVTCLLVLQA 142 (505)
Q Consensus 67 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~~~pd~~t~~~ll~~ 142 (505)
.+.++..-|.+.+++++|++++-. -...+.+.|+...|-++- +-..+ .++++|..+...++..
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~--~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQ--AGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHH--HTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHH
Confidence 455566678889999999987643 233456667766554443 44445 6788888777777777
Q ss_pred HHhccChH-HHHHHHHHHH----HcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCh
Q 010642 143 CAHLGALE-FGEKIHRYIS----EHG--YGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHG 215 (505)
Q Consensus 143 ~~~~~~~~-~a~~i~~~~~----~~~--~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 215 (505)
+.....-+ .=..+.+.++ +.| ..-|+.....+...|.+.+++.+|+.-|-.-.++.+..+..|+.-+...+..
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~ 183 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDES 183 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCG
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCC
Confidence 66554311 1122333333 333 2336778888999999999999999988533333345665555444443332
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 010642 216 RDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 216 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (505)
.++ |.+.-..++ -|...+++..|..+++...+
T Consensus 184 ~e~--------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 184 HTA--------------PLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GGH--------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred ccH--------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 221 222223333 34556788888877766654
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.33 E-value=10 Score=30.50 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=20.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 010642 167 KMNLCNSLIAMYSKCGSLGMAFEVFKGMP 195 (505)
Q Consensus 167 ~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 195 (505)
+..+-.-+..+|.+.|++++|+.+++.++
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 44555557777777777777777777775
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.91 E-value=26 Score=38.38 Aligned_cols=123 Identities=7% Similarity=-0.094 Sum_probs=71.2
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC--CCCC-----------------
Q 010642 240 VLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM--GVKP----------------- 300 (505)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p----------------- 300 (505)
++..+...+..+.+.++..-.. .+...--.+..+|...|++++|.+.|.+. ++.+
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 4445555555555544332221 12222223445566666666666666665 1111
Q ss_pred ------CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCc-----hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 010642 301 ------DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESG-----DYVLLLNLYSSVGDWEKVKELREFMNEKGLQ 368 (505)
Q Consensus 301 ------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 368 (505)
-..-|..++..+.+++.++.+.++.+.+++..+++.. .|..+...+...|++++|...+-.+.+...+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 1123556667777888888888887777766533322 4666777788888888887777766654443
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.66 E-value=2.8 Score=39.66 Aligned_cols=63 Identities=13% Similarity=0.125 Sum_probs=34.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC--------CCCCCHHH
Q 010642 240 VLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM--------GVKPDSTI 304 (505)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~~~ 304 (505)
++.++...|+.+++...+..+... .+-+...|..+|.+|.+.|+..+|++.|++. |+.|...+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 444455556666666555555542 1223445566666666666666666555544 66665543
No 253
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=83.32 E-value=26 Score=31.67 Aligned_cols=170 Identities=10% Similarity=0.037 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHH----HHHchhccCCCCCCHHHHHHHHH
Q 010642 66 QLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCL----FDNLNREESGCKPDDVTCLLVLQ 141 (505)
Q Consensus 66 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~~~pd~~t~~~ll~ 141 (505)
..|.++..-|.+.+++++|++++.. -...+.+.|+...|-++ .+...+ .++++|......++.
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~--~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDL--AEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHH--cCCCCCHHHHHHHHH
Confidence 3556677778888999999888643 23445666777665554 444455 678888887777777
Q ss_pred HHHhccC-----hHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhC--
Q 010642 142 ACAHLGA-----LEFGEKIHRYISEHGY--GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMN-- 212 (505)
Q Consensus 142 ~~~~~~~-----~~~a~~i~~~~~~~~~--~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~-- 212 (505)
.+..... .+-..+...+-.+.|- .-++.....+...|.+.|++.+|+.-|-.-...|...+..|+.-+...
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~ 180 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVD 180 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcC
Confidence 7655331 1222233333333332 236788889999999999999999887643333455555555444433
Q ss_pred -CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhh
Q 010642 213 -GHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKD 263 (505)
Q Consensus 213 -g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (505)
|...++- .+.-..++ -|...+++..|..+|+...+.
T Consensus 181 ~~~~~e~d--------------lf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 181 DIEDSTVA--------------EFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CCCHHHHH--------------HHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred CCCcchHH--------------HHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 4333321 11112233 344567888888888876653
No 254
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=83.19 E-value=11 Score=27.25 Aligned_cols=86 Identities=16% Similarity=0.136 Sum_probs=63.1
Q ss_pred cChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 010642 147 GALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQ 226 (505)
Q Consensus 147 ~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 226 (505)
...++|..|-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|-++-. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 357888888888877763 34444444566788999999999999999999999987765 46788888888777777
Q ss_pred HCCCCCCHHHH
Q 010642 227 RAGVFPDDQTF 237 (505)
Q Consensus 227 ~~g~~p~~~t~ 237 (505)
.+| .|....|
T Consensus 96 ~sg-~p~~q~F 105 (115)
T 2uwj_G 96 GSS-DPALADF 105 (115)
T ss_dssp TCS-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 664 3344444
No 255
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.85 E-value=7.9 Score=29.83 Aligned_cols=63 Identities=13% Similarity=0.263 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHH
Q 010642 214 HGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVD 278 (505)
Q Consensus 214 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 278 (505)
+.-+..+-++.+....+.|+.....+.+.+|-+.+++..|.++|+.++.+ ..+....|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 34466666777777889999999999999999999999999999999875 3344556777764
No 256
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.74 E-value=9.1 Score=29.50 Aligned_cols=50 Identities=18% Similarity=0.320 Sum_probs=41.0
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHH
Q 010642 295 SMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLN 344 (505)
Q Consensus 295 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 344 (505)
.+.+-|++.+..+.+.+|++.+|+..|.++++-++..-.+....|-.++.
T Consensus 81 ~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 81 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 34778999999999999999999999999999988776554556766543
No 257
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.70 E-value=35 Score=32.71 Aligned_cols=317 Identities=9% Similarity=0.029 Sum_probs=145.6
Q ss_pred CCchHHHHHHHHHHhC-----CCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHH-hCCCCChhHHHHHHH----HHHhC
Q 010642 9 SSPEEGFYLFEKMRQK-----RIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLR-DGYQLDSQLMTTLMD----LYSTF 78 (505)
Q Consensus 9 g~~~~A~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~----~~~~~ 78 (505)
|++++|++-+-.+.+. +..-.......++..|...++++...+.+..+.+ +|.. ......++. .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcC
Confidence 5677777766555431 2233455677777888888888777665554433 2321 122223332 22222
Q ss_pred C--CHHHHHHHHhcCCC---C-------ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC---HHHHHHHHHHH
Q 010642 79 E--KSFEACKLFDEIPQ---R-------DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD---DVTCLLVLQAC 143 (505)
Q Consensus 79 g--~~~~A~~~~~~~~~---~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd---~~t~~~ll~~~ 143 (505)
. +.+.-..+.+.... . .......|...|-..|++.+|..++..+..+..+.-+. ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2 22222333332221 1 11223456667777777777777777765421121111 12344455666
Q ss_pred HhccChHHHHHHHHHHHH----cCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHH
Q 010642 144 AHLGALEFGEKIHRYISE----HGYGSK--MNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRD 217 (505)
Q Consensus 144 ~~~~~~~~a~~i~~~~~~----~~~~~~--~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 217 (505)
...+++..|..+...+.. ...+|+ ...+...+..+...+++.+|.+.|.++ ...+...++...
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~-----------~~~~~~~~d~~~ 256 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI-----------YQTDAIKSDEAK 256 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH-----------HHHHHHHSCHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-----------HhcccccCCHHH
Confidence 666777777666665532 111121 123344444555555555555443322 122222222222
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhc--CChHHHHHHHH
Q 010642 218 AIESFGAMQRAGVFPDDQTFTGVLSAC-SHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRA--GLLDQAYQLIT 294 (505)
Q Consensus 218 A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~ 294 (505)
....+..+ ++... +..+. .-..++...... ..-++...|..++.+|... .+++.+.+.|.
T Consensus 257 ~~~~L~~~--------------v~~~iLa~~~~--~~~~ll~~~~~~-~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~ 319 (445)
T 4b4t_P 257 WKPVLSHI--------------VYFLVLSPYGN--LQNDLIHKIQND-NNLKKLESQESLVKLFTTNELMRWPIVQKTYE 319 (445)
T ss_dssp HHHHHHHH--------------HHHHHHSSCSS--TTHHHHHSHHHH-SSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTC
T ss_pred HHHHHHHH--------------HHHHHhCCCCc--hHHHHHHHHhhc-ccccccHHHHHHHHHHHhchHhhhHHHHHHHH
Confidence 22221111 11111 11111 112222233222 2234566777888887654 45666666665
Q ss_pred HC-CCC-------CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 295 SM-GVK-------PDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 295 ~~-~~~-------p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
.. .-. .....|..|......++ +..+. .|-+...+..|...+.- ..++++....+|...|
T Consensus 320 ~~L~~~~~~~~~~~~~~~~~~L~~~v~ehn--------l~~i~--k~Ys~I~l~~la~lL~l--~~~evE~~ls~mI~~g 387 (445)
T 4b4t_P 320 PVLNEDDLAFGGEANKHHWEDLQKRVIEHN--------LRVIS--EYYSRITLLRLNELLDL--TESQTETYISDLVNQG 387 (445)
T ss_dssp SSTTTCCSSCCCSCSSHHHHHHHHHHHHHH--------HHHHH--HHEEEEEHHHHHHHHTS--CHHHHHHHHHHHHHHT
T ss_pred HHhcccchhhhcchhhHHHHHHHHHHHHHH--------HHHHH--HHhceeeHHHHHHHhCc--CHHHHHHHHHHHHHCC
Confidence 44 101 11233444444332221 11111 12233445555555422 5788999999998766
Q ss_pred C
Q 010642 367 L 367 (505)
Q Consensus 367 ~ 367 (505)
.
T Consensus 388 ~ 388 (445)
T 4b4t_P 388 I 388 (445)
T ss_dssp S
T ss_pred C
Confidence 4
No 258
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.66 E-value=12 Score=27.17 Aligned_cols=79 Identities=14% Similarity=0.128 Sum_probs=58.6
Q ss_pred cChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 010642 147 GALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQ 226 (505)
Q Consensus 147 ~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 226 (505)
...++|..|-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|-++-.. +.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 457888888888877663 344444445567789999999999999999999999877653 5677777777776766
Q ss_pred HCC
Q 010642 227 RAG 229 (505)
Q Consensus 227 ~~g 229 (505)
.+|
T Consensus 97 ~sg 99 (116)
T 2p58_C 97 RSQ 99 (116)
T ss_dssp TCC
T ss_pred hCC
Confidence 654
No 259
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.57 E-value=35 Score=32.68 Aligned_cols=159 Identities=13% Similarity=0.154 Sum_probs=89.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHhhhc-CC--cCC--cc
Q 010642 202 WSAMISGLAMNGHGRDAIESFGAMQRA--GVFPD---DQTFTGVLSACSHCGLVDEGMMFLDRMSKDF-GI--LPN--IH 271 (505)
Q Consensus 202 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~--~p~--~~ 271 (505)
...|...|...|++.+|.+++.++... |..+. ...+...+..|...+++.+|..+++++.... .. +|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345677788888888888888887642 22221 1355666778888899999998888865321 11 122 23
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHC----CCCCCHHHHHHHHH----HHHhcCchhHHHHHHHHHHHhc-CCCCchHHHH
Q 010642 272 HYGCVVDLLGRAGLLDQAYQLITSM----GVKPDSTIWRTLLG----ACRIHKHVTLGERVIEHLIELK-AQESGDYVLL 342 (505)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~----~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l 342 (505)
.+..++..+...+++.+|-+.|.+. ....|...+..++. ...-.+....-..++....... -+....|..|
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L 299 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESL 299 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHH
Confidence 5677777888888888887777666 12223333322221 1111211122222222222222 1223467778
Q ss_pred HHHHHhC--CCHHHHHHHHH
Q 010642 343 LNLYSSV--GDWEKVKELRE 360 (505)
Q Consensus 343 ~~~~~~~--g~~~~a~~~~~ 360 (505)
+.+|... .+|+.+.+.|+
T Consensus 300 ~k~f~~~~L~~~~~~~~~~~ 319 (445)
T 4b4t_P 300 VKLFTTNELMRWPIVQKTYE 319 (445)
T ss_dssp HHHHHHCCSSSHHHHHHHTC
T ss_pred HHHHHhchHhhhHHHHHHHH
Confidence 8888654 45666655553
No 260
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.29 E-value=6.8 Score=31.55 Aligned_cols=22 Identities=5% Similarity=0.013 Sum_probs=14.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHC
Q 010642 275 CVVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 275 ~li~~~~~~g~~~~A~~~~~~~ 296 (505)
-+..+|.+.+++++|+.+++.+
T Consensus 127 kia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 127 KLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHCCHHHHHHHHhcC
Confidence 3555666666666666666666
No 261
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=77.69 E-value=29 Score=28.80 Aligned_cols=48 Identities=15% Similarity=0.059 Sum_probs=19.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCC
Q 010642 167 KMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGH 214 (505)
Q Consensus 167 ~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 214 (505)
+..+-...+.+..+.|+.+....+.+.+..++...-...+.++.+.|.
T Consensus 94 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 333444444444444443333333333333444443444444444443
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=76.35 E-value=14 Score=32.45 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=21.3
Q ss_pred ccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC
Q 010642 246 HCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 296 (505)
+.|.+++++.....-++ .-+.|...=..|++.+|-.|++++|.+-++..
T Consensus 9 ~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp TTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44444444444444443 22223333344444555555555554444433
No 263
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.16 E-value=33 Score=28.58 Aligned_cols=96 Identities=16% Similarity=0.191 Sum_probs=65.5
Q ss_pred CCCCHH---HHHHHHHHHHhcCchhHHHHHHHHHHHhc--CCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCc
Q 010642 298 VKPDST---IWRTLLGACRIHKHVTLGERVIEHLIELK--AQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPG 372 (505)
Q Consensus 298 ~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 372 (505)
.+-|+. .|-..+..| ..++...+..+|..|...+ ..-+..|...+..+...|++.+|.++|+.=.+.+-.|
T Consensus 73 YkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P--- 148 (202)
T 3esl_A 73 YRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP--- 148 (202)
T ss_dssp GTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS---
T ss_pred ccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc---
Confidence 344554 343333333 2344668899999988776 4455678899999999999999999999888877766
Q ss_pred eeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCcccccc
Q 010642 373 CSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEIT 419 (505)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~ 419 (505)
.+...+...+...+|.+.+++.+..
T Consensus 149 ----------------------~~rL~~~~~~F~~R~~~~~~~~~~~ 173 (202)
T 3esl_A 149 ----------------------YNRLLRSLSNYEDRLREMNIVENQN 173 (202)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHTTCCCC--
T ss_pred ----------------------HHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 2234455566777888888744433
No 264
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=74.84 E-value=25 Score=27.03 Aligned_cols=70 Identities=9% Similarity=-0.098 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHhccCC---HHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC
Q 010642 230 VFPDDQTFTGVLSACSHCGL---VDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP 300 (505)
Q Consensus 230 ~~p~~~t~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 300 (505)
-.|+..|-.....++.+..+ ..+|+.+++.+.+. +-.-....+--|.-++.+.|++++|.++.+.+ .+.|
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 34455444444444444443 34566666666553 21011222333444455555555555555544 4444
No 265
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=70.99 E-value=60 Score=29.27 Aligned_cols=168 Identities=12% Similarity=0.077 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHh
Q 010642 170 LCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIES----FGAMQRAGVFPDDQTFTGVLSACS 245 (505)
Q Consensus 170 ~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 245 (505)
.|.++..-|.+.+++++|.+++..- ...+.+.|+...|-++ .+-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3556667788889999998885432 2345667887666654 444556788888888888877765
Q ss_pred ccCCHH-HHHHHHHHHhhh---cCC--cCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---C
Q 010642 246 HCGLVD-EGMMFLDRMSKD---FGI--LPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIH---K 316 (505)
Q Consensus 246 ~~g~~~-~a~~~~~~~~~~---~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~---g 316 (505)
....-+ .=.++++.+.+- .|- .-++.....+...|.+.|++.+|...|-. +-.-+...+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~-~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML-GTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCccHHHHHHHHHHHHHhcCCC
Confidence 533211 112333333321 121 12566778888999999999999888763 2111345555555444333 3
Q ss_pred chhHHHHHHHHHHHhcCCCCchHH-HHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 317 HVTLGERVIEHLIELKAQESGDYV-LLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
...++ ..|. -.+--|.-.|+...|..+++...+
T Consensus 183 ~~~e~---------------dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTV---------------AEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHH---------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CcchH---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33222 2221 234456678899999999887653
No 266
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=70.33 E-value=71 Score=29.90 Aligned_cols=128 Identities=13% Similarity=0.032 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHc-CCCC---chhHHHHHHHHHHhcC-CHHHHHHHHhcCCC---CChhHH----
Q 010642 135 TCLLVLQACAHLGALEFGEKIHRYISEH-GYGS---KMNLCNSLIAMYSKCG-SLGMAFEVFKGMPE---KDVVSW---- 202 (505)
Q Consensus 135 t~~~ll~~~~~~~~~~~a~~i~~~~~~~-~~~~---~~~~~~~l~~~y~~~g-~~~~A~~~~~~m~~---~~~~~~---- 202 (505)
....+...|.+.|+.++..+++...... +..+ .......|++.+.... ..+.-.++..+..+ .+-.+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666665544321 0011 1223445555555432 22222222222211 111222
Q ss_pred --HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 010642 203 --SAMISGLAMNGHGRDAIESFGAMQRAGVFPDD-----QTFTGVLSACSHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 203 --~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (505)
..++..|...|++.+|..++.++.+.=-+.|. ..+..-+..|...+++.++...+.....
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 13455666666666666666666542111121 1233444455566666666666655543
No 267
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=69.05 E-value=39 Score=26.36 Aligned_cols=70 Identities=11% Similarity=0.072 Sum_probs=41.4
Q ss_pred CCcchHHHHHHHHHhcCChH---HHHHHHHHC-CCCC-C-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCc
Q 010642 268 PNIHHYGCVVDLLGRAGLLD---QAYQLITSM-GVKP-D-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESG 337 (505)
Q Consensus 268 p~~~~~~~li~~~~~~g~~~---~A~~~~~~~-~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 337 (505)
|+..+--.+.-++.+..+.+ ++..+++.. ...| + ....-.|.-++.+.|+++.|.+..+.+++.+|.|..
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 34444334444444444332 344444444 1123 2 234445667788999999999999999999988743
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.44 E-value=47 Score=31.57 Aligned_cols=57 Identities=9% Similarity=0.001 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 010642 273 YGCVVDLLGRAGLLDQAYQLITSM-----GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLI 329 (505)
Q Consensus 273 ~~~li~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 329 (505)
...+.+.|.+.|++++|.+.+.++ +..--...+-.++..+...+++..+...++++.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 334444444444444444444444 111112334444444444445555444444443
No 269
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.75 E-value=45 Score=31.74 Aligned_cols=33 Identities=0% Similarity=-0.158 Sum_probs=23.3
Q ss_pred CCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 010642 333 AQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGL 367 (505)
Q Consensus 333 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 367 (505)
|-.......|...+.- ..+++.+.+.+|...|-
T Consensus 344 ~Ys~I~l~~mA~~l~~--s~~~~E~~L~~lI~~g~ 376 (429)
T 4b4t_R 344 SYKTLSLKSMASAFGV--SVAFLDNDLGKFIPNKQ 376 (429)
T ss_dssp TCSEEEHHHHHHHHTS--CHHHHHHHHHHHHHHTS
T ss_pred HhceeeHHHHHHHhCc--CHHHHHHHHHHHHHcCC
Confidence 5556677777777643 47888888888877664
No 270
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=64.48 E-value=57 Score=26.64 Aligned_cols=91 Identities=13% Similarity=0.051 Sum_probs=38.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010642 166 SKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACS 245 (505)
Q Consensus 166 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 245 (505)
++..+....+.+..+.|+.+....+.+.+..++...-...+.++.+.+.. ++...+..+.. .++...-...+.++.
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~ 163 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALG 163 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 34444444455555555443333333334444444444444444444432 23333333332 234444444444555
Q ss_pred ccCCHHHHHHHHHHHh
Q 010642 246 HCGLVDEGMMFLDRMS 261 (505)
Q Consensus 246 ~~g~~~~a~~~~~~~~ 261 (505)
..|.. ++...+..+.
T Consensus 164 ~~~~~-~~~~~L~~~l 178 (201)
T 3ltj_A 164 EIGGE-RVRAAMEKLA 178 (201)
T ss_dssp HHCSH-HHHHHHHHHH
T ss_pred HhCch-hHHHHHHHHH
Confidence 44442 3333344443
No 271
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=63.51 E-value=62 Score=26.69 Aligned_cols=153 Identities=8% Similarity=-0.015 Sum_probs=73.9
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHH
Q 010642 64 DSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQAC 143 (505)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~ 143 (505)
+..+-...+..+.+.|+.+....+.+.+..+|...-...+.++.+.+..+ +...+..+.. .+|...-...+.++
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~-----~~~~~vr~~a~~aL 105 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK-----DEDGWVRQSAAVAL 105 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT-----CSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc-----CCCHHHHHHHHHHH
Confidence 34444444444444444333333333344455555455555555555433 3333333322 24555555556666
Q ss_pred HhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHH
Q 010642 144 AHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFG 223 (505)
Q Consensus 144 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 223 (505)
...++.+....+ ..+.+ .++..+-...+.+..+.|..+....+.+.+..++...-...+.++.+.+. .++...+.
T Consensus 106 ~~~~~~~~~~~L-~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~ 180 (211)
T 3ltm_A 106 GQIGDERAVEPL-IKALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAME 180 (211)
T ss_dssp HHHCCGGGHHHH-HHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHH
T ss_pred HHhCcHHHHHHH-HHHHh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHH
Confidence 666554322222 22222 45566666666666666665444444444445566555556666666654 34555555
Q ss_pred HHHH
Q 010642 224 AMQR 227 (505)
Q Consensus 224 ~m~~ 227 (505)
++.+
T Consensus 181 ~~l~ 184 (211)
T 3ltm_A 181 KLAE 184 (211)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
No 272
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=63.11 E-value=18 Score=31.82 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=42.2
Q ss_pred HHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 010642 278 DLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQE 335 (505)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 335 (505)
..+.+.|.+++|++.+..- .-+| |...-..|+..++-.|+++.|.+-++...+++|..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 3456778888887777655 3344 55555667788888888888888888888887654
No 273
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=61.46 E-value=58 Score=25.70 Aligned_cols=51 Identities=10% Similarity=0.053 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHhc--CCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 010642 319 TLGERVIEHLIELK--AQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQT 369 (505)
Q Consensus 319 ~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 369 (505)
+.+..+|..|...+ ...+..|...+..+...|++.+|.++|+.=.+.+-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 33788888887765 4445578888899999999999999998888777666
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=61.27 E-value=64 Score=26.86 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=30.1
Q ss_pred ChHHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh
Q 010642 148 ALEFGEKIHRYISEHGYGSK-MNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDV 199 (505)
Q Consensus 148 ~~~~a~~i~~~~~~~~~~~~-~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 199 (505)
+......+|..|...|+-.. ...|......+...|++.+|.++|+.-.+...
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 35566667777766655432 34455566666666666666666665443333
No 275
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=60.49 E-value=45 Score=24.12 Aligned_cols=77 Identities=14% Similarity=0.001 Sum_probs=51.9
Q ss_pred CCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHch
Q 010642 44 CSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLN 123 (505)
Q Consensus 44 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 123 (505)
..-++|.-|-+.+...+- ...+--.-+..+...|++++|..+.+...-||.++|-+|-. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 445677777777665542 33333333445677888888888888888888888887754 46777777776666665
Q ss_pred h
Q 010642 124 R 124 (505)
Q Consensus 124 ~ 124 (505)
.
T Consensus 96 ~ 96 (115)
T 2uwj_G 96 G 96 (115)
T ss_dssp T
T ss_pred h
Confidence 4
No 276
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=60.39 E-value=97 Score=27.92 Aligned_cols=56 Identities=7% Similarity=0.144 Sum_probs=43.0
Q ss_pred CCCCC--HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 297 GVKPD--STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 297 ~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
+++|. .-+.+.-+..+.+++++..|..+.+++++++|... ..+.|.++...-.+.+
T Consensus 200 ~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 200 KLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 66664 33667777889999999999999999999998532 3567888887776554
No 277
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=60.28 E-value=1.4e+02 Score=29.84 Aligned_cols=182 Identities=13% Similarity=-0.054 Sum_probs=88.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 010642 173 SLIAMYSKCGSLGMAFEVFKGMPEKD---VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGL 249 (505)
Q Consensus 173 ~l~~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 249 (505)
-.+....+.|+++.|...|+.|.... ....-=+..++...|+.++|..+|..+... . +|-.++. ..+.|.
T Consensus 290 ~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lA-a~~Lg~ 362 (618)
T 1qsa_A 290 RRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVA-AQRIGE 362 (618)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHH-HHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHH-HHHcCC
Confidence 33444456677777777777776432 111122334556677777777777776541 1 2222221 122221
Q ss_pred HHHHHHHHHHHhhhcCCcCC-cc-----hHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHH
Q 010642 250 VDEGMMFLDRMSKDFGILPN-IH-----HYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGER 323 (505)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~p~-~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 323 (505)
.-. + ......+. .. .-..-+..+...|....|...+....-..+......+.......|..+.+..
T Consensus 363 ~~~-------~-~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~ 434 (618)
T 1qsa_A 363 EYE-------L-KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQ 434 (618)
T ss_dssp CCC-------C-CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCC-------C-CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHH
Confidence 100 0 00000010 00 1112345577888888888777766112344433444455566777777765
Q ss_pred HHHHHHHhcC---CCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 010642 324 VIEHLIELKA---QESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQT 369 (505)
Q Consensus 324 ~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 369 (505)
........+. .-+..|..++..+++.-.++..+-.---..+.+..|
T Consensus 435 ~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p 483 (618)
T 1qsa_A 435 ATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNP 483 (618)
T ss_dssp HHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCC
Confidence 5543222110 012356667777776666655443322233445544
No 278
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=59.53 E-value=1.1e+02 Score=30.91 Aligned_cols=23 Identities=13% Similarity=0.047 Sum_probs=18.1
Q ss_pred HHhcCChHHHHHHHHHCCCCCCH
Q 010642 280 LGRAGLLDQAYQLITSMGVKPDS 302 (505)
Q Consensus 280 ~~~~g~~~~A~~~~~~~~~~p~~ 302 (505)
+...|+++.|++.++++++-|..
T Consensus 548 ~~~~g~~~~AL~~i~~L~llPl~ 570 (661)
T 2qx5_A 548 LYFNKQWQETLSQMELLDLLPFS 570 (661)
T ss_dssp HHHTTCHHHHHHHHHHTSCSCC-
T ss_pred HHHcCCHHHHHHHHHhCCCCCCC
Confidence 36789999999999999777743
No 279
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=59.24 E-value=48 Score=24.02 Aligned_cols=77 Identities=12% Similarity=0.010 Sum_probs=52.2
Q ss_pred CCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHch
Q 010642 44 CSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLN 123 (505)
Q Consensus 44 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 123 (505)
..-++|.-|-+.+...+- ...+--.-+..+...|++++|..+.+.+.-||.++|-+|-. .+.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 456677777777665542 33333333445677889999999988888888888887765 35666677766665664
Q ss_pred h
Q 010642 124 R 124 (505)
Q Consensus 124 ~ 124 (505)
.
T Consensus 97 ~ 97 (116)
T 2p58_C 97 R 97 (116)
T ss_dssp T
T ss_pred h
Confidence 4
No 280
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=58.39 E-value=3.4 Score=27.23 Aligned_cols=22 Identities=18% Similarity=0.480 Sum_probs=17.8
Q ss_pred ceEEEecCCccccccCCccCCC
Q 010642 481 REVIIRDRLRFHHFREGRCSCN 502 (505)
Q Consensus 481 ~~~~~~~~~~~h~~~~g~~~~~ 502 (505)
+.|=+.|.+..|+|++|+-+-.
T Consensus 8 k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEE
T ss_pred eeEecCCCcEEEEEcCCceehh
Confidence 4566899999999999986543
No 281
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=55.90 E-value=49 Score=31.23 Aligned_cols=323 Identities=11% Similarity=0.082 Sum_probs=146.7
Q ss_pred HHHHHHHhCCCCCChhh--HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhCCCHHHHHHHHhcC
Q 010642 16 YLFEKMRQKRIPTNPFA--CSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQ--LMTTLMDLYSTFEKSFEACKLFDEI 91 (505)
Q Consensus 16 ~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~ 91 (505)
++++.+++.|..|+... ..+.+...+..|+.+- .+.+++.|..++.. ...+.+...++.|+.+-+.-+++.-
T Consensus 28 ~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 103 (437)
T 1n11_A 28 PIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV----AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN 103 (437)
T ss_dssp HHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHH----HHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCC
Confidence 45555566666554321 1233444455666554 44444555443321 1123344456778888777777754
Q ss_pred CCC---ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCch
Q 010642 92 PQR---DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKM 168 (505)
Q Consensus 92 ~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~ 168 (505)
..+ +...++. +...+..|+.+-+..+++.-.. .. ..+.... +.+...+..|+.+-++ .+.+.|..++.
T Consensus 104 a~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~~~~--~~-~~~~~g~-t~L~~A~~~g~~~~v~----~Ll~~g~~~~~ 174 (437)
T 1n11_A 104 ANPNLATTAGHTP-LHIAAREGHVETVLALLEKEAS--QA-CMTKKGF-TPLHVAAKYGKVRVAE----LLLERDAHPNA 174 (437)
T ss_dssp CCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHHTTCC--SC-CCCTTSC-CHHHHHHHTTCHHHHH----HHHHTTCCTTC
T ss_pred CCCCCCCCCCCcH-HHHHHHcCCHHHHHHHHhCCCC--Cc-CCCCCCC-CHHHHHHHcCCHHHHH----HHHhCCCCCCC
Confidence 332 2222233 3334566777766666654321 11 1111111 2233445667765444 44455544432
Q ss_pred h--HHHHHHHHHHhcCCHHHHHHHHhcCCCCCh---hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH---HHHHH
Q 010642 169 N--LCNSLIAMYSKCGSLGMAFEVFKGMPEKDV---VSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQ---TFTGV 240 (505)
Q Consensus 169 ~--~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~l 240 (505)
. ...+.+...+..|+.+-+..+++.-..++. ..++.+. ..+..|+.+- .+.+.+.|..++.. ..+.+
T Consensus 175 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~~----~~~Ll~~g~~~~~~~~~g~t~L 249 (437)
T 1n11_A 175 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLH-IAAKQNQVEV----ARSLLQYGGSANAESVQGVTPL 249 (437)
T ss_dssp CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHH-HHHHTTCHHH----HHHHHHTTCCTTCCCTTCCCHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHH-HHHHcCCHHH----HHHHHHcCCCCCCCCCCCCCHH
Confidence 1 112344556678888877777775543322 2233333 3345566543 33444444443321 11222
Q ss_pred HHHHhccCCHHHHHHHHHHHhhhcCCcCCc---chHHHHHHHHHhcCChHHHHHHHHHCCCCC---CHHHHHHHHHHHHh
Q 010642 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNI---HHYGCVVDLLGRAGLLDQAYQLITSMGVKP---DSTIWRTLLGACRI 314 (505)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~p---~~~~~~~ll~~~~~ 314 (505)
...+..|..+-...++ +. +..++. ...+. +...++.|+.+-+.-+++.- ..+ +...++. +...+.
T Consensus 250 -~~A~~~g~~~~v~~Ll----~~-~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~-L~~A~~ 320 (437)
T 1n11_A 250 -HLAAQEGHAEMVALLL----SK-QANGNLGNKSGLTP-LHLVAQEGHVPVADVLIKHG-VMVDATTRMGYTP-LHVASH 320 (437)
T ss_dssp -HHHHHTTCHHHHHHHH----TT-TCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHHHT-CCTTCCCSSCCCH-HHHHHH
T ss_pred -HHHHHCCCHHHHHHHH----hc-CCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhCC-ccCCCCCCCCCCH-HHHHHH
Confidence 2334456655444333 32 433332 12222 33445667777666666553 221 1111222 333456
Q ss_pred cCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 010642 315 HKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTT 370 (505)
Q Consensus 315 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 370 (505)
.|+.+....+++.-......+..-...| ..-+..|..+ +.+.+.+.|..++
T Consensus 321 ~g~~~~v~~Ll~~gad~n~~~~~g~t~L-~~A~~~g~~~----iv~~Ll~~ga~~~ 371 (437)
T 1n11_A 321 YGNIKLVKFLLQHQADVNAKTKLGYSPL-HQAAQQGHTD----IVTLLLKNGASPN 371 (437)
T ss_dssp SSCSHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCCSC
T ss_pred cCcHHHHHHHHhcCCCCCCCCCCCCCHH-HHHHHCChHH----HHHHHHHCcCCCC
Confidence 6776655544433111111121112222 2233556654 4455556777654
No 282
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=55.55 E-value=78 Score=25.33 Aligned_cols=51 Identities=8% Similarity=0.003 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHhc--CCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 010642 319 TLGERVIEHLIELK--AQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQT 369 (505)
Q Consensus 319 ~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 369 (505)
+....+|..|...+ ...+..|...+..+...|++.+|.++|+.=.+.+-.|
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 34677888888766 4445678889999999999999999999888887766
No 283
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=54.86 E-value=59 Score=28.09 Aligned_cols=21 Identities=14% Similarity=-0.108 Sum_probs=11.8
Q ss_pred HHHHHHhCCCHHHHHHHHhcC
Q 010642 71 LMDLYSTFEKSFEACKLFDEI 91 (505)
Q Consensus 71 li~~~~~~g~~~~A~~~~~~~ 91 (505)
.+...++.|+++....+++.-
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~g 28 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEGG 28 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcC
Confidence 344455566666666666543
No 284
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=53.36 E-value=90 Score=25.38 Aligned_cols=153 Identities=8% Similarity=-0.020 Sum_probs=75.6
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHH
Q 010642 64 DSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQAC 143 (505)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~ 143 (505)
|..+....+..+.+.++.+....+.+.+..++...-...+.++.+.+..+. ...+..+.. .+|...-...+.++
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~-----d~~~~vr~~a~~aL 100 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERA-VEPLIKALK-----DEDGWVRQSAAVAL 100 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT-----CSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc-----CCCHHHHHHHHHHH
Confidence 333333333333333332333333333444455444455555555554433 333333322 24555555666666
Q ss_pred HhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHH
Q 010642 144 AHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFG 223 (505)
Q Consensus 144 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 223 (505)
...++.+....+. .+.+ .++..+-...+.+..+.|..+....+...+..++...-...+.++.+.|. .++...+.
T Consensus 101 ~~~~~~~~~~~L~-~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~ 175 (201)
T 3ltj_A 101 GQIGDERAVEPLI-KALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAME 175 (201)
T ss_dssp HHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHH
T ss_pred HHhCcHHHHHHHH-HHHc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHH
Confidence 6666543322222 2222 45666666667777766665444444444555666666666666666664 34555555
Q ss_pred HHHH
Q 010642 224 AMQR 227 (505)
Q Consensus 224 ~m~~ 227 (505)
.+..
T Consensus 176 ~~l~ 179 (201)
T 3ltj_A 176 KLAE 179 (201)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5554
No 285
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=52.18 E-value=55 Score=28.10 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=15.8
Q ss_pred HHHHHHHCCChhHHHHHHHHchh
Q 010642 102 LISCYIRNQRTRDALCLFDNLNR 124 (505)
Q Consensus 102 li~~~~~~g~~~~A~~~~~~m~~ 124 (505)
-+..+....++++|.+++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 35667777777777777776654
No 286
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=51.32 E-value=5.2 Score=23.12 Aligned_cols=11 Identities=36% Similarity=0.939 Sum_probs=8.9
Q ss_pred ccCCccCCCCC
Q 010642 494 FREGRCSCNDY 504 (505)
Q Consensus 494 ~~~g~~~~~~~ 504 (505)
-.+|-|||+-|
T Consensus 19 ~~~~~C~CG~y 29 (42)
T 2l0z_A 19 NSLGGCRCGKY 29 (42)
T ss_dssp CTTSSBTTTTB
T ss_pred cCCceeccccc
Confidence 46899999976
No 287
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=48.25 E-value=2.6e+02 Score=29.72 Aligned_cols=126 Identities=12% Similarity=0.014 Sum_probs=71.2
Q ss_pred HHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChH
Q 010642 71 LMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALE 150 (505)
Q Consensus 71 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~ 150 (505)
++..+...|..+-|.++...++. +...--.+..+|...|++++|.+.|++.-. |+.++...... ..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~---gl~~~~~~~~~----------~~ 881 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL---VLYSHTSQFAV----------LR 881 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCCC---TTCSSCCSCGG----------GH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhh---hcccCcccccc----------hh
Confidence 66667778888888887777665 444445678889999999999999998743 44332211000 00
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHh----cCCCCChh----HHHHHHHHHHhC
Q 010642 151 FGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFK----GMPEKDVV----SWSAMISGLAMN 212 (505)
Q Consensus 151 ~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~----~m~~~~~~----~~~~li~~~~~~ 212 (505)
....++.. .+. .......|..++..+-+.+.++.+.++-+ .+...|.. .|+.+..+.+..
T Consensus 882 ~~~~ll~~-~e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 882 EFQEIAEK-YHH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHHHHHHH-TTT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccCc-ccc-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 00011100 000 01122366777777778887777655443 33333332 466666655543
No 288
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=47.34 E-value=91 Score=23.69 Aligned_cols=62 Identities=15% Similarity=0.153 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHHCCC--hhHHHHHHHHchhccCCCCC
Q 010642 68 MTTLMDLYSTFEKSFEACKLFDEIPQRD---TVAWNVLISCYIRNQR--TRDALCLFDNLNREESGCKP 131 (505)
Q Consensus 68 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~~p 131 (505)
.+.++.=|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+.. .++-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~--~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWK--SSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH--TTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH--CCCcC
Confidence 3456666777788888888887776552 2334444445554432 3456667766665 45433
No 289
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=46.77 E-value=1e+02 Score=24.22 Aligned_cols=50 Identities=10% Similarity=0.014 Sum_probs=27.5
Q ss_pred HHHHHHHchhccCCCCCC-HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCC
Q 010642 115 ALCLFDNLNREESGCKPD-DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGS 166 (505)
Q Consensus 115 A~~~~~~m~~~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~ 166 (505)
+.++|..|.. .|+--. +.-|......+...|++.+|.+++..-++.+-.|
T Consensus 84 p~~if~~L~~--~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYN--HGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHT--TTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5666666655 444333 2334444555555666666666666666655444
No 290
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=46.39 E-value=60 Score=24.75 Aligned_cols=63 Identities=13% Similarity=0.208 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCh---hHHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCC
Q 010642 171 CNSLIAMYSKCGSLGMAFEVFKGMPEKDV---VSWSAMISGLAMNGH--GRDAIESFGAMQRAGVFPD 233 (505)
Q Consensus 171 ~~~l~~~y~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 233 (505)
.+.++.-|...|+.++|.+.++++..|.. ....++..++-+.+. .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 34567777777888888888887765522 233444445544432 3456667777766655443
No 291
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=44.50 E-value=81 Score=27.13 Aligned_cols=51 Identities=10% Similarity=-0.093 Sum_probs=23.9
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHhCCCCChh---HHHHHHHHHHhCCCHHHHHHHHhc
Q 010642 36 AIKCCMKFCSLMGGLQIHARVLRDGYQLDSQ---LMTTLMDLYSTFEKSFEACKLFDE 90 (505)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~ 90 (505)
.+...++.|+++... .+++.|..++.. ...+.+...+..|+.+-+..+++.
T Consensus 8 ~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQ----QLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61 (285)
T ss_dssp HHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHH----HHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 344455566665443 344555433321 112233344556666655555554
No 292
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=44.17 E-value=84 Score=26.92 Aligned_cols=44 Identities=9% Similarity=0.003 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 319 TLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 319 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
..+..+.+.+.. ...+......+..+.+.|+-++|.++|=+...
T Consensus 76 ~L~~~L~~~l~~--~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 76 AISSKLSQSILS--SNEIVHLKSGTENMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHHHHHHHHT--CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Confidence 344444444422 33344455666777778888888777765543
No 293
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=41.61 E-value=78 Score=24.95 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=33.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHHCCC--hhHHHHHHHHchh
Q 010642 68 MTTLMDLYSTFEKSFEACKLFDEIPQRD---TVAWNVLISCYIRNQR--TRDALCLFDNLNR 124 (505)
Q Consensus 68 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~ 124 (505)
.+.++.=|...|+.++|.+.++.+..|. ......+..++-+.++ .+.+..++..+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~ 73 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWK 73 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 3456666777777777777777776542 2334444444444322 3445666666665
No 294
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=41.50 E-value=1.1e+02 Score=26.76 Aligned_cols=182 Identities=8% Similarity=-0.001 Sum_probs=83.0
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChh-HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCCHH
Q 010642 176 AMYSKCGSLGMAFEVFKGMPEKDVV-SWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQ---TFTGVLSACSHCGLVD 251 (505)
Q Consensus 176 ~~y~~~g~~~~A~~~~~~m~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~g~~~ 251 (505)
...++.|+.+-+..+++.-...+.. -++ .+...+..|+.+- ++.+.+.|..|+.. -.+.|.. .+..|..+
T Consensus 36 ~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t-~L~~A~~~g~~~~----v~~Ll~~ga~~~~~d~~g~t~L~~-A~~~g~~~ 109 (285)
T 3kea_A 36 YYAIADNNVRLVCTLLNAGALKNLLENEF-PLHQAATLEDTKI----VKILLFSGLDDSQFDDKGNTALYY-AVDSGNMQ 109 (285)
T ss_dssp HHHHHTTCHHHHHHHHHTTGGGSCCTTCC-HHHHHTTSSSCHH----HHHHHHTTCCTTCCCTTSCCHHHH-HHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCCCCCCCCC-HHHHHHHcCCHHH----HHHHHHCCCCCCCcCCCCCcHHHH-HHHcCCHH
Confidence 3344556666555555542211111 112 2222334555433 33334445544321 1222332 33456665
Q ss_pred HHHHHHHHHhhhcCCcCCc---chHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010642 252 EGMMFLDRMSKDFGILPNI---HHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHL 328 (505)
Q Consensus 252 ~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 328 (505)
-...+++. |..++. ..+...+...+..|+.+-+..+++.-....+...-.+.+...+..|+.+.+..+++.-
T Consensus 110 ~v~~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 184 (285)
T 3kea_A 110 TVKLFVKK-----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYM 184 (285)
T ss_dssp HHHHHHHH-----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhc-----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcC
Confidence 54444433 443432 2222344445567777666666655422222212233444556778888777777765
Q ss_pred HHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCc
Q 010642 329 IELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPG 372 (505)
Q Consensus 329 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 372 (505)
......+..-....+..-+..|+. ++.+.+.+.|..++..
T Consensus 185 ad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 185 TSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSA 224 (285)
T ss_dssp HHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTT
T ss_pred CCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCC
Confidence 544433322222222223345554 4455566778766543
No 295
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=41.20 E-value=1.8e+02 Score=26.16 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=42.8
Q ss_pred CCCCC--HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 010642 297 GVKPD--STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGL 367 (505)
Q Consensus 297 ~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 367 (505)
++.|. .-+...-+..+.+++++..|..+.+++++++|... ..+.|.++...-.+.+.
T Consensus 191 ~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~~ 249 (320)
T 3mkr_B 191 NLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNPT 249 (320)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSCC
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCCC
Confidence 66664 33667777888999999999999999999986522 34668888877766543
No 296
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=40.47 E-value=2.3e+02 Score=26.41 Aligned_cols=89 Identities=10% Similarity=0.003 Sum_probs=50.1
Q ss_pred cCCcchHHHHHHHHHhcCChHHHHHHHHHC--CCCCCHHHH---HHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHH
Q 010642 267 LPNIHHYGCVVDLLGRAGLLDQAYQLITSM--GVKPDSTIW---RTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVL 341 (505)
Q Consensus 267 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 341 (505)
.|....+..++.+| +.+++.+..++++.. .+..|.... ..|..... ...+.++ ..|-...++..
T Consensus 253 ~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir--------~~~L~~i--~~pYsrIsl~~ 321 (394)
T 3txn_A 253 GRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML--------EQNLCRI--IEPYSRVQVAH 321 (394)
T ss_dssp SHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH--------HHHHHHH--HTTCSEEEHHH
T ss_pred CccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--------HHHHHHH--hHhhceeeHHH
Confidence 45555556666654 456787777777776 344455421 11111110 1111111 23555566777
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 010642 342 LLNLYSSVGDWEKVKELREFMNEKGLQ 368 (505)
Q Consensus 342 l~~~~~~~g~~~~a~~~~~~m~~~~~~ 368 (505)
+...+.- ..++++..+-+|...|.-
T Consensus 322 iA~~l~l--s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 322 VAESIQL--PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp HHHHHTC--CHHHHHHHHHHHHHTTSS
T ss_pred HHHHHCc--CHHHHHHHHHHHHHCCCe
Confidence 7766643 689999999999987753
No 297
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=37.90 E-value=6.5 Score=19.58 Aligned_cols=13 Identities=38% Similarity=1.288 Sum_probs=9.5
Q ss_pred cccCCcc--CCCCCC
Q 010642 493 HFREGRC--SCNDYW 505 (505)
Q Consensus 493 ~~~~g~~--~~~~~w 505 (505)
.|.+|.| .|++-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 6778887 577766
No 298
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.44 E-value=56 Score=25.81 Aligned_cols=62 Identities=13% Similarity=0.231 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCh---hHHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCC
Q 010642 171 CNSLIAMYSKCGSLGMAFEVFKGMPEKDV---VSWSAMISGLAMNGH--GRDAIESFGAMQRAGVFP 232 (505)
Q Consensus 171 ~~~l~~~y~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 232 (505)
.+.++.-|...|+.++|.+.++++..|.. +...++..++-+.+. .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 45567777777888888888887765522 233444445544322 345566676666665543
No 299
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=36.17 E-value=1.1e+02 Score=25.82 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHhc--CCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 010642 319 TLGERVIEHLIELK--AQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQT 369 (505)
Q Consensus 319 ~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 369 (505)
+....+|..|...+ ...+..|...+..+...|++.+|.++|+.=.+.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 56778888888766 4445678889999999999999999998887777665
No 300
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=34.11 E-value=1.7e+02 Score=23.38 Aligned_cols=60 Identities=18% Similarity=0.145 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHH
Q 010642 47 MGGLQIHARVLRDGYQLD-SQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCY 106 (505)
Q Consensus 47 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 106 (505)
+....+|..|...|+... ...|..-...+-..|++.+|.++|+.-.+..+.....|-..+
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~ 137 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQH 137 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 347788999988887543 456777888888899999999999876654444444444333
No 301
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=34.00 E-value=1.2e+02 Score=24.48 Aligned_cols=76 Identities=7% Similarity=0.041 Sum_probs=34.5
Q ss_pred HccCCcHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhCCCHHHHHHHHhcCC-C---CChhHHHHHHHHHHHCCChhH
Q 010642 41 MKFCSLMGGLQIHARVLRDGYQLDSQL--MTTLMDLYSTFEKSFEACKLFDEIP-Q---RDTVAWNVLISCYIRNQRTRD 114 (505)
Q Consensus 41 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~ 114 (505)
+..|+.+ +.+.+++.|..++... ..+.+...+..|+.+-+..+++.-. . +|..-++. +...+..|+.+-
T Consensus 47 ~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~ 121 (201)
T 3hra_A 47 VHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNA-LIPAAEKGHIDN 121 (201)
T ss_dssp HHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCS-HHHHHHTTCHHH
T ss_pred HHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcH-HHHHHHcCCHHH
Confidence 3445543 4444555565443221 1122334456677777777764432 1 12222222 223345566655
Q ss_pred HHHHHHH
Q 010642 115 ALCLFDN 121 (505)
Q Consensus 115 A~~~~~~ 121 (505)
+..+++.
T Consensus 122 v~~Ll~~ 128 (201)
T 3hra_A 122 VKLLLED 128 (201)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 5555544
No 302
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=33.12 E-value=32 Score=24.23 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=24.3
Q ss_pred cchHHHHHHHHHHHHHHHHcCccccccccc
Q 010642 393 PRINEIYQMLDEINKQLKIAGYVAEITSEL 422 (505)
Q Consensus 393 ~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~ 422 (505)
+...+++..+++-..+++..|+.||...+-
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~G 42 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILFG 42 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEEc
Confidence 456677888888888889999999987653
No 303
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=32.54 E-value=51 Score=23.60 Aligned_cols=38 Identities=16% Similarity=0.099 Sum_probs=30.1
Q ss_pred CCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHH
Q 010642 182 GSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAI 219 (505)
Q Consensus 182 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 219 (505)
...+.|.++++.++.++..+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46888888888888888888888888887767655443
No 304
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.07 E-value=3.2e+02 Score=26.54 Aligned_cols=65 Identities=8% Similarity=0.037 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCC-CCCH--HHHH-HHHHHHHhccChHHHHHHHHHHHHc
Q 010642 96 TVAWNVLISCYIRNQRTRDALCLFDNLNREESGC-KPDD--VTCL-LVLQACAHLGALEFGEKIHRYISEH 162 (505)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~pd~--~t~~-~ll~~~~~~~~~~~a~~i~~~~~~~ 162 (505)
...+|.+++.|...+.++.|..+..+..- ... .+|. .+|. .+.....-.+++.+|.+.+.++...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEY--PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcC--CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34577777788888888888877776632 111 1111 2222 2344455566666666666665543
No 305
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=30.55 E-value=55 Score=23.42 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=31.7
Q ss_pred CCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHH
Q 010642 79 EKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALC 117 (505)
Q Consensus 79 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 117 (505)
.+.+.|.++++.++.+...+|..++.++...|+..-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 468889999999999888999999999877777665543
No 306
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=30.54 E-value=4.2e+02 Score=28.14 Aligned_cols=87 Identities=6% Similarity=-0.169 Sum_probs=52.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC--CCCCC----------------
Q 010642 240 VLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM--GVKPD---------------- 301 (505)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~---------------- 301 (505)
++..|...|..+-+.++.. -.+.++..--.+..+|...|++++|.+.|+++ |+.++
T Consensus 816 l~~~L~~~~~~~~a~eL~~------~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG------WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG------GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHh------hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 5666777777766554322 22223322234556677888888888888877 33211
Q ss_pred -------HHHHHHHHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 302 -------STIWRTLLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 302 -------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
..-|..++..+-+++-++.+.++.+.+++.-
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~ 927 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK 927 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 1145556666777777777777777776543
No 307
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=30.15 E-value=2.7e+02 Score=24.91 Aligned_cols=216 Identities=7% Similarity=-0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHH
Q 010642 68 MTTLMDLYSTFEKSFEACKLFDEIPQR---DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACA 144 (505)
Q Consensus 68 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~ 144 (505)
...++.=|...|+.++|...++.+..| .......+-.++-+...-.+....+-.-.. .++-+.......+...+.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~--~~~ls~~~i~~gf~~ll~ 83 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC--GTVMSTTDVEKSFDKLLK 83 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHH--HHTBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Q ss_pred hccCh--------HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC--HHHHHHHHhcCCCCChh--------------
Q 010642 145 HLGAL--------EFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGS--LGMAFEVFKGMPEKDVV-------------- 200 (505)
Q Consensus 145 ~~~~~--------~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~--~~~A~~~~~~m~~~~~~-------------- 200 (505)
...++ +..-.++.+++..++-|-..+.......-...|. ...|..++..=......
T Consensus 84 ~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~e 163 (307)
T 2zu6_B 84 DLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVN 163 (307)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHH
T ss_pred hhhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHH
Q ss_pred ----HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH--HHHHHHHHHHhhhcCCcCCcchHH
Q 010642 201 ----SWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLV--DEGMMFLDRMSKDFGILPNIHHYG 274 (505)
Q Consensus 201 ----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~--~~a~~~~~~~~~~~~~~p~~~~~~ 274 (505)
..+.++.-|...|+.++|...++++...... .......+..+.-+.++. +...+++..+.+. |+-+......
T Consensus 164 elkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~-~~ls~~q~~~ 241 (307)
T 2zu6_B 164 HLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKS-STITVDQMKR 241 (307)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH-CSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHC-CCCCHHHHHH
Q ss_pred HHHHHHHhcCChH
Q 010642 275 CVVDLLGRAGLLD 287 (505)
Q Consensus 275 ~li~~~~~~g~~~ 287 (505)
.+...+....++.
T Consensus 242 Gf~~vl~~l~Dl~ 254 (307)
T 2zu6_B 242 GYERIYNEIPDIN 254 (307)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhccHhh
No 308
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=29.69 E-value=1.5e+02 Score=24.54 Aligned_cols=180 Identities=12% Similarity=0.031 Sum_probs=73.5
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhc
Q 010642 174 LIAMYSKCGSLGMAFEVFKGMPEKD----VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQ---TFTGVLSACSH 246 (505)
Q Consensus 174 l~~~y~~~g~~~~A~~~~~~m~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~ 246 (505)
.+...++.|+.+-+..+++.-...+ ...++.+. ..+..|+.+ +++.+.+.|..|+.. ..+.+ ...+.
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~-~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~ 118 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLH-WATRQGHLS----MVVQLMKYGADPSLIDGEGCSCI-HLAAQ 118 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHH-HHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHH-HHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhH-HHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHH-HHHHH
Confidence 3444556666666666665443221 11122222 223344433 334444445444321 11222 23334
Q ss_pred cCCHHHHHHHHHHHhhhcCCcCCc---chHHHHHHHHHhcCChHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCchhH
Q 010642 247 CGLVDEGMMFLDRMSKDFGILPNI---HHYGCVVDLLGRAGLLDQAYQLITSMGVKPDST---IWRTLLGACRIHKHVTL 320 (505)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~---~~~~ll~~~~~~g~~~~ 320 (505)
.|..+-...+++ . |..++. ...+.+..+ +..+...+..+++.+.+..++.. .-.+.+...+..|+.+.
T Consensus 119 ~~~~~~~~~Ll~----~-~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 192 (240)
T 3eu9_A 119 FGHTSIVAYLIA----K-GQDVDMMDQNGMTPLMWA-AYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTV 192 (240)
T ss_dssp TTCHHHHHHHHH----T-TCCTTCCCTTSCCHHHHH-HHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHh----c-CCCccccCCCCCcHHHHH-HHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHH
Confidence 466554333333 2 443332 222333333 33344445555555553332211 11123444456677665
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 321 GERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
+..+++.-......+..-. .-+....+.|+.+-+..+++...+.+
T Consensus 193 v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 193 ISLLLEAGANVDAQNIKGE-SALDLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp HHHHHHHTCCTTCBCTTSC-BHHHHHHHTTCHHHHHHHHHHC----
T ss_pred HHHHHHcCCCCCCcCCCCC-CHHHHHHHcCcHHHHHHHHHhhhccC
Confidence 5544443211111111111 23344466777777766665544443
No 309
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=28.94 E-value=1.5e+02 Score=20.75 Aligned_cols=61 Identities=15% Similarity=0.047 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHH
Q 010642 153 EKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRD 217 (505)
Q Consensus 153 ~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 217 (505)
..++..+.+.|+-... -+..+- ......+.|..+++.+..++..+|..++.++.+.+...-
T Consensus 25 ~~lld~L~~~~vlt~~-~~e~I~---~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~L 85 (94)
T 2p1h_A 25 SYIMDHMISDGFLTIS-EEEKVR---NEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDL 85 (94)
T ss_dssp HHHHHHHHHHTSSCHH-HHHHHH---TSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHCCCCCHH-HHHHHH---cCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHH
Confidence 3455566655533222 222111 235677888888888888888888888888877775433
No 310
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.88 E-value=1.4e+02 Score=29.02 Aligned_cols=62 Identities=13% Similarity=0.083 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCc--chH-HHHHHHHHhcCChHHHHHHHHHC
Q 010642 235 QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNI--HHY-GCVVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 235 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~-~~li~~~~~~g~~~~A~~~~~~~ 296 (505)
..++.++..|...+.+++|..+..+..--....++. ..| -.+...+.-.+++.+|.+.+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 467778888888888888888888774200001111 112 22345566678888888777765
No 311
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=28.54 E-value=1.4e+02 Score=23.15 Aligned_cols=63 Identities=10% Similarity=0.029 Sum_probs=41.1
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChH
Q 010642 223 GAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLD 287 (505)
Q Consensus 223 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 287 (505)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-+.
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCEE
Confidence 346677877766433 3444554556666788888888765 54556666666677888888764
No 312
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=28.15 E-value=2.5e+02 Score=23.11 Aligned_cols=83 Identities=13% Similarity=-0.003 Sum_probs=38.3
Q ss_pred HHHccCCcHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhCCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHHCCChh
Q 010642 39 CCMKFCSLMGGLQIHARVLRDGYQLDSQ--LMTTLMDLYSTFEKSFEACKLFDEIPQR---DTVAWNVLISCYIRNQRTR 113 (505)
Q Consensus 39 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 113 (505)
..+..|+.+....+++...+.|..++.. ...+.+...+..|+.+-+..+++.-..+ +...++. +...+..|+.+
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~ 93 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA-AHLACEHRSPT 93 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH-HHHHHHcCCHH
Confidence 3344566666666666555555433321 1112333344566666665555543222 2111222 22334556655
Q ss_pred HHHHHHHHc
Q 010642 114 DALCLFDNL 122 (505)
Q Consensus 114 ~A~~~~~~m 122 (505)
-...+++..
T Consensus 94 ~~~~Ll~~~ 102 (241)
T 1k1a_A 94 CLRALLDSA 102 (241)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHcC
Confidence 555555543
No 313
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=28.05 E-value=3.5e+02 Score=24.77 Aligned_cols=77 Identities=6% Similarity=0.078 Sum_probs=44.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC--HHHHHHHHHHHhhhcCCcCCcchHHHHHHH
Q 010642 202 WSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGL--VDEGMMFLDRMSKDFGILPNIHHYGCVVDL 279 (505)
Q Consensus 202 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 279 (505)
.+.++.-|...|+.++|...++++......+ .+....+..+.-+.++ .+...+++..+... ++-+.......+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~-glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKS-STITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHH
Confidence 5677788888888888888888875321111 2334455555555433 35567777777765 544443333333333
Q ss_pred H
Q 010642 280 L 280 (505)
Q Consensus 280 ~ 280 (505)
+
T Consensus 298 l 298 (358)
T 3eiq_C 298 Y 298 (358)
T ss_dssp H
T ss_pred H
Confidence 3
No 314
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=27.97 E-value=53 Score=21.06 Aligned_cols=30 Identities=17% Similarity=0.026 Sum_probs=22.8
Q ss_pred chHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 010642 11 PEEGFYLFEKMRQKRIPTNPFACSFAIKCC 40 (505)
Q Consensus 11 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 40 (505)
.++|...|.+|++..-.+...||..+++.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 478888898888765444567898888877
No 315
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=27.73 E-value=1.3e+02 Score=24.87 Aligned_cols=53 Identities=15% Similarity=0.158 Sum_probs=28.6
Q ss_pred hHHHHHHHHHCCCCCCH-H-HHHH-----HHHHHHhcCchhHHHHHHHHHHHhcCCCCch
Q 010642 286 LDQAYQLITSMGVKPDS-T-IWRT-----LLGACRIHKHVTLGERVIEHLIELKAQESGD 338 (505)
Q Consensus 286 ~~~A~~~~~~~~~~p~~-~-~~~~-----ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 338 (505)
++.|+.+++.++-.-|. . .... .+..|.+.|.+++|.+++++..+..+.+...
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~l 153 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPF 153 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTT
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHH
Confidence 45677777777322221 1 1222 2355888888888888888877666554443
No 316
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=27.57 E-value=15 Score=21.48 Aligned_cols=12 Identities=25% Similarity=0.681 Sum_probs=9.8
Q ss_pred cccccCchhhhh
Q 010642 461 NLRICVDCHNFA 472 (505)
Q Consensus 461 ~~~~~~~~~~~~ 472 (505)
++|+|.+|+.-+
T Consensus 16 ~YRvC~~CgkPi 27 (44)
T 2lo3_A 16 QYRVCEKCGKPL 27 (44)
T ss_dssp CEEECTTTCCEE
T ss_pred cchhhcccCCcc
Confidence 789999998644
No 317
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=27.54 E-value=1.2e+02 Score=27.44 Aligned_cols=82 Identities=12% Similarity=-0.001 Sum_probs=37.1
Q ss_pred HHHHhcCChHHHHHHHHHC-C-----CC-CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCC
Q 010642 278 DLLGRAGLLDQAYQLITSM-G-----VK-PDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVG 350 (505)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~-~-----~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 350 (505)
..-+..|+.+-+..+++.. . +. .|..-++. +...+..|+.+.+..+++.-......+..-.. -+..-+..|
T Consensus 178 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t-pL~~A~~~g 255 (364)
T 3ljn_A 178 MRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSH-LHWAILINWEDVAMRFVEMGIDVNMEDNEHTV-PLYLSVRAA 255 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCT-THHHHTTTCHHHHHHHHTTTCCTTCCCTTSCC-HHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHhcccccccccccccCCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC-HHHHHHHhC
Confidence 3445667777777777653 1 11 11122222 23344667665444444321111111211122 233334567
Q ss_pred CHHHHHHHHHH
Q 010642 351 DWEKVKELREF 361 (505)
Q Consensus 351 ~~~~a~~~~~~ 361 (505)
..+-+..+++.
T Consensus 256 ~~~~v~~Ll~~ 266 (364)
T 3ljn_A 256 MVLLTKELLQK 266 (364)
T ss_dssp CHHHHHHHHHH
T ss_pred hHHHHHHHHHc
Confidence 77777766664
No 318
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=27.10 E-value=86 Score=23.47 Aligned_cols=43 Identities=12% Similarity=0.020 Sum_probs=29.0
Q ss_pred HHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHc
Q 010642 118 LFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEH 162 (505)
Q Consensus 118 ~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 162 (505)
+|+.+.. ..+.|+...-..-+..+...++++.|.+++..+...
T Consensus 48 LfdkLn~--~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAG--GKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHH--TCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 5666666 566665554444455567778999999998887753
No 319
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.23 E-value=1.9e+02 Score=22.47 Aligned_cols=62 Identities=11% Similarity=0.164 Sum_probs=34.9
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChH
Q 010642 224 AMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLD 287 (505)
Q Consensus 224 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 287 (505)
.+.+.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-+.
T Consensus 17 ~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 17 SIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCcEE
Confidence 3556666655432 23444454555566677777777665 44445555555667777777654
No 320
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=25.77 E-value=1.4e+02 Score=23.85 Aligned_cols=17 Identities=24% Similarity=0.112 Sum_probs=8.5
Q ss_pred cCCchHHHHHHHHHHhC
Q 010642 8 SSSPEEGFYLFEKMRQK 24 (505)
Q Consensus 8 ~g~~~~A~~~~~~m~~~ 24 (505)
.|++-+|-++|+..-..
T Consensus 45 ~g~yfeaHEvLEe~W~~ 61 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYN 61 (161)
T ss_dssp TTCHHHHHHHHHHHTTT
T ss_pred CCCchHHHHHHHHHHHh
Confidence 35555555555555444
No 321
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=25.41 E-value=51 Score=28.25 Aligned_cols=88 Identities=8% Similarity=-0.098 Sum_probs=50.1
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCChh-------hHHHHHHHHH--ccCCcHHHHHHHHHHHHhC---------CC-CCh
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTNPF-------ACSFAIKCCM--KFCSLMGGLQIHARVLRDG---------YQ-LDS 65 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~---------~~-~~~ 65 (505)
.++.|+.+....+++.+.+.|..++.. -.+.|..|.. +.|+.+-...+++.-...+ +. .|.
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~ 91 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYY 91 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSE
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccccc
Confidence 456788888888888777776655533 3344444442 5677777766666543311 00 010
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhcCCC
Q 010642 66 QLMTTLMDLYSTFEKSFEACKLFDEIPQ 93 (505)
Q Consensus 66 ~~~~~li~~~~~~g~~~~A~~~~~~~~~ 93 (505)
.-. +.+...+..|+.+-+.-+++.-..
T Consensus 92 ~g~-t~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 92 RGQ-TALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp ESB-CHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCC-CHHHHHHHcCCHHHHHHHHhCCCC
Confidence 112 233345567888877777775433
No 322
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=25.40 E-value=1.4e+02 Score=25.19 Aligned_cols=61 Identities=5% Similarity=0.038 Sum_probs=45.4
Q ss_pred cHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHH
Q 010642 46 LMGGLQIHARVLRDGYQL-DSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCY 106 (505)
Q Consensus 46 ~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 106 (505)
.+....+|..|...|+.. -...|......+-..|++.+|..+|+.-.+..+.....|...|
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~ 191 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKY 191 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 357788999999988754 4556788888888999999999999876655555555555443
No 323
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=25.35 E-value=1.9e+02 Score=26.95 Aligned_cols=299 Identities=15% Similarity=0.132 Sum_probs=140.3
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCC
Q 010642 36 AIKCCMKFCSLMGGLQIHARVLRDGYQLDSQL--MTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQ 110 (505)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 110 (505)
.|...+..|+++-. +.+++.|..++... ..+.+...+..|+.+-+..+++.-.. .+...++. +...+..|
T Consensus 17 ~L~~Aa~~g~~~~v----~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~g 91 (437)
T 1n11_A 17 PLHVASFMGHLPIV----KNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTP-LHCAARIG 91 (437)
T ss_dssp HHHHHHHHTCHHHH----HHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCH-HHHHHHHT
T ss_pred HHHHHHHCCCHHHH----HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH-HHHHHHCC
Confidence 34444566776544 44455665554321 12344455678888888888875433 22222333 33345667
Q ss_pred ChhHHHHHHHHchhccCCCCCC---HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCch--hHHHHHHHHHHhcCCHH
Q 010642 111 RTRDALCLFDNLNREESGCKPD---DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKM--NLCNSLIAMYSKCGSLG 185 (505)
Q Consensus 111 ~~~~A~~~~~~m~~~~~~~~pd---~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~--~~~~~l~~~y~~~g~~~ 185 (505)
+.+-+.-+++. |..|+ .... +.+...+..|+.+....++ +.+..++. ....+.+...++.|+.+
T Consensus 92 ~~~~v~~Ll~~------ga~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L~~A~~~g~~~ 160 (437)
T 1n11_A 92 HTNMVKLLLEN------NANPNLATTAGH-TPLHIAAREGHVETVLALL----EKEASQACMTKKGFTPLHVAAKYGKVR 160 (437)
T ss_dssp CHHHHHHHHHH------TCCTTCCCTTCC-CHHHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred CHHHHHHHHhC------CCCCCCCCCCCC-cHHHHHHHcCCHHHHHHHH----hCCCCCcCCCCCCCCHHHHHHHcCCHH
Confidence 76655555443 22222 1111 2333445667776655554 33322211 11123455567788988
Q ss_pred HHHHHHhcCCCCCh---hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHH
Q 010642 186 MAFEVFKGMPEKDV---VSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQ---TFTGVLSACSHCGLVDEGMMFLDR 259 (505)
Q Consensus 186 ~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~g~~~~a~~~~~~ 259 (505)
-+..+++.-..++. ...+.+. ..+..|+.+ +++.+.+.|..|+.. ..+. +...+..|..+-+..+++.
T Consensus 161 ~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~ 234 (437)
T 1n11_A 161 VAELLLERDAHPNAAGKNGLTPLH-VAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTP-LHIAAKQNQVEVARSLLQY 234 (437)
T ss_dssp HHHHHHHTTCCTTCCCSSCCCHHH-HHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCH-HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCH-HHHHHHcCCHHHHHHHHHc
Confidence 88888876443322 2222332 334456553 344445555544432 1222 3334456776655554432
Q ss_pred HhhhcCCcCCcc---hHHHHHHHHHhcCChHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 010642 260 MSKDFGILPNIH---HYGCVVDLLGRAGLLDQAYQLITSMGVKP---DSTIWRTLLGACRIHKHVTLGERVIEHLIELKA 333 (505)
Q Consensus 260 ~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 333 (505)
|..++.. ..+. +...+..|+.+-+.-+++.- ..+ +...++. +...+..|+.+.+..+++.-...+.
T Consensus 235 -----g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~g~~~~~ 306 (437)
T 1n11_A 235 -----GGSANAESVQGVTP-LHLAAQEGHAEMVALLLSKQ-ANGNLGNKSGLTP-LHLVAQEGHVPVADVLIKHGVMVDA 306 (437)
T ss_dssp -----TCCTTCCCTTCCCH-HHHHHHTTCHHHHHHHHTTT-CCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHHHTCCTTC
T ss_pred -----CCCCCCCCCCCCCH-HHHHHHCCCHHHHHHHHhcC-CCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhCCccCCC
Confidence 4333321 2222 33345667766665555443 222 2112222 2333456776655554443222222
Q ss_pred CCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 010642 334 QESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQT 369 (505)
Q Consensus 334 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 369 (505)
.+...... +...+..|+.+-+. .+.+.|..+
T Consensus 307 ~~~~g~t~-L~~A~~~g~~~~v~----~Ll~~gad~ 337 (437)
T 1n11_A 307 TTRMGYTP-LHVASHYGNIKLVK----FLLQHQADV 337 (437)
T ss_dssp CCSSCCCH-HHHHHHSSCSHHHH----HHHHTTCCT
T ss_pred CCCCCCCH-HHHHHHcCcHHHHH----HHHhcCCCC
Confidence 22222222 23334567766444 444556544
No 324
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=24.97 E-value=3.8e+02 Score=24.03 Aligned_cols=129 Identities=6% Similarity=0.018 Sum_probs=74.0
Q ss_pred chHHHHHHHHHHhC-C----CCCChhhHHHH---HHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHH
Q 010642 11 PEEGFYLFEKMRQK-R----IPTNPFACSFA---IKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSF 82 (505)
Q Consensus 11 ~~~A~~~~~~m~~~-g----~~p~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 82 (505)
-++|..+|..+... + ..|+....... +..+.+..+ -+++..+.+.|+.|...+..-++..+++.=.++
T Consensus 165 E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~ 240 (331)
T 3qye_A 165 EEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLG 240 (331)
T ss_dssp HHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHH
T ss_pred HHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHH
Confidence 46788888887654 2 22333222211 222222222 357777788888888888888888888877789
Q ss_pred HHHHHHhcCCC--CChhHHHH--HHH----HHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccC
Q 010642 83 EACKLFDEIPQ--RDTVAWNV--LIS----CYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGA 148 (505)
Q Consensus 83 ~A~~~~~~~~~--~~~~~~~~--li~----~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~ 148 (505)
.+.++++.+.. +....+-+ ++. ...+..++++.+..++.... . .+......+++-......
T Consensus 241 ~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p---~--~~~~di~~li~~A~~l~~ 309 (331)
T 3qye_A 241 FVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLP---N--LGLVQMEKTINQVFEMDI 309 (331)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTT---C--CCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCC---C--CCHHHHHHHHHHHHhCCc
Confidence 99999987653 22222222 111 12334578888888876432 1 234455555554444443
No 325
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=24.13 E-value=4e+02 Score=24.06 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=16.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHhcCCCC
Q 010642 69 TTLMDLYSTFEKSFEACKLFDEIPQR 94 (505)
Q Consensus 69 ~~li~~~~~~g~~~~A~~~~~~~~~~ 94 (505)
..++.=|...|+.++|.+.++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 44555566666777777777666654
No 326
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.72 E-value=2.5e+02 Score=21.72 Aligned_cols=62 Identities=2% Similarity=0.033 Sum_probs=41.9
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHccC-CcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCH
Q 010642 19 EKMRQKRIPTNPFACSFAIKCCMKFC-SLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKS 81 (505)
Q Consensus 19 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 81 (505)
+.|.+.|.+++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.---++.+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 446678888776543 3555666655 6667899999998877666666655566667676643
No 327
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.54 E-value=2.4e+02 Score=21.40 Aligned_cols=60 Identities=5% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHccC-CcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC
Q 010642 19 EKMRQKRIPTNPFACSFAIKCCMKFC-SLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFE 79 (505)
Q Consensus 19 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 79 (505)
+.+.+.|.+++..- ..++..+...+ ..-.|.++++.+.+.+...+..|.---++.+...|
T Consensus 7 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 7 SELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
No 328
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.49 E-value=2.4e+02 Score=21.69 Aligned_cols=39 Identities=8% Similarity=0.037 Sum_probs=18.3
Q ss_pred hccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 010642 145 HLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGS 183 (505)
Q Consensus 145 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~ 183 (505)
..+..-.|.++++.+.+.+...+..|..--++.+...|-
T Consensus 33 ~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 33 NSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred hCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 333444455555555554433344444444445555443
No 329
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.24 E-value=1.1e+02 Score=22.87 Aligned_cols=16 Identities=6% Similarity=-0.087 Sum_probs=8.2
Q ss_pred HhCCCHHHHHHHHhcC
Q 010642 76 STFEKSFEACKLFDEI 91 (505)
Q Consensus 76 ~~~g~~~~A~~~~~~~ 91 (505)
...++++.|.++.-.+
T Consensus 72 l~~~dy~~A~~ih~~l 87 (118)
T 2yru_A 72 LLHHQWDAADDIHRSL 87 (118)
T ss_dssp HHHTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 3445555555555444
No 330
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=21.54 E-value=1.5e+02 Score=24.53 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=11.7
Q ss_pred HHhccChHHHHHHHHHHHHcCC
Q 010642 143 CAHLGALEFGEKIHRYISEHGY 164 (505)
Q Consensus 143 ~~~~~~~~~a~~i~~~~~~~~~ 164 (505)
.+..|+.+....+++.+.+.|.
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~ 37 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGR 37 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcCC
Confidence 3455666665555555544443
No 331
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=20.92 E-value=59 Score=20.83 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=17.9
Q ss_pred CCChhHHHHHHHHchhccCCCCCCHH
Q 010642 109 NQRTRDALCLFDNLNREESGCKPDDV 134 (505)
Q Consensus 109 ~g~~~~A~~~~~~m~~~~~~~~pd~~ 134 (505)
.-+++.|+..|.++... ..++|+.+
T Consensus 33 ~Wd~~~A~~~F~~l~~~-~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAK-GEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHT-TCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHc-CCCCHHHh
Confidence 56788899999888752 45666654
No 332
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.84 E-value=1.7e+02 Score=23.25 Aligned_cols=71 Identities=14% Similarity=0.117 Sum_probs=44.1
Q ss_pred HHHHHHHHH-HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhc-CCcCCcchHHHHHHHHHhcCChH
Q 010642 216 RDAIESFGA-MQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDF-GILPNIHHYGCVVDLLGRAGLLD 287 (505)
Q Consensus 216 ~~A~~~~~~-m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~ 287 (505)
+.+++-+.+ +.+.|++++..- ..++..+...+..-.|.++++.+.+.. +...+..|.-.-++.+...|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 444544443 456678776543 445666666677778888888887631 22334555555667888888764
No 333
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=20.27 E-value=3.5e+02 Score=24.82 Aligned_cols=24 Identities=13% Similarity=-0.032 Sum_probs=13.7
Q ss_pred HHHHHHHHHhccChHHHHHHHHHH
Q 010642 136 CLLVLQACAHLGALEFGEKIHRYI 159 (505)
Q Consensus 136 ~~~ll~~~~~~~~~~~a~~i~~~~ 159 (505)
...++.-|...++.++|.+.++++
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL 38 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREM 38 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh
Confidence 345555566666666665555554
No 334
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=20.04 E-value=3.2e+02 Score=25.07 Aligned_cols=77 Identities=9% Similarity=0.113 Sum_probs=35.3
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhcc--ChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 010642 99 WNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLG--ALEFGEKIHRYISEHGYGSKMNLCNSLIA 176 (505)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~--~~~~a~~i~~~~~~~~~~~~~~~~~~l~~ 176 (505)
.+.++.-|...|+.++|.+.++++.. ....+ .+....+..+.-+.+ ..+...+++..+.+.|+-+.......+..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~--p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEV--PHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC--TTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccC--CcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 35556666666666666666666633 21111 222333333333322 23344555555555554444444333333
Q ss_pred HH
Q 010642 177 MY 178 (505)
Q Consensus 177 ~y 178 (505)
.+
T Consensus 297 vl 298 (358)
T 3eiq_C 297 IY 298 (358)
T ss_dssp HH
T ss_pred HH
Confidence 33
Done!