Query 010644
Match_columns 505
No_of_seqs 383 out of 2295
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 02:55:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010644.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010644hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 2.3E-53 5.1E-58 463.6 24.0 379 58-484 28-461 (571)
2 PHA02713 hypothetical protein; 100.0 1.7E-47 3.6E-52 418.2 25.0 352 60-494 19-407 (557)
3 PHA02790 Kelch-like protein; P 100.0 3.6E-46 7.9E-51 401.6 25.0 286 61-405 17-328 (480)
4 PHA03098 kelch-like protein; P 100.0 9.6E-45 2.1E-49 395.6 24.9 308 63-419 6-368 (534)
5 KOG4350 Uncharacterized conser 99.9 2.5E-28 5.4E-33 244.1 7.0 227 56-330 35-265 (620)
6 KOG2075 Topoisomerase TOP1-int 99.9 5.2E-22 1.1E-26 203.6 11.3 215 62-315 110-340 (521)
7 KOG4682 Uncharacterized conser 99.7 1.7E-17 3.6E-22 167.0 11.6 178 63-276 66-248 (488)
8 PF07707 BACK: BTB And C-termi 99.7 8.2E-18 1.8E-22 143.2 5.0 102 199-309 1-102 (103)
9 KOG4591 Uncharacterized conser 99.6 2.3E-15 5.1E-20 139.0 7.8 155 63-257 63-223 (280)
10 smart00875 BACK BTB And C-term 99.6 2.7E-15 5.9E-20 126.5 7.3 99 199-307 1-99 (101)
11 PF00651 BTB: BTB/POZ domain; 99.6 1.5E-15 3.3E-20 130.5 4.3 97 64-191 8-109 (111)
12 smart00225 BTB Broad-Complex, 99.5 3E-14 6.5E-19 116.2 5.0 88 68-186 1-90 (90)
13 KOG0783 Uncharacterized conser 99.3 1.6E-12 3.5E-17 140.5 5.2 137 64-235 710-852 (1267)
14 KOG4441 Proteins containing BT 98.5 4.3E-07 9.3E-12 100.3 8.8 108 354-483 381-507 (571)
15 PHA02713 hypothetical protein; 98.2 7E-06 1.5E-10 90.7 11.6 48 354-405 352-408 (557)
16 PHA02790 Kelch-like protein; P 98.2 6.1E-06 1.3E-10 89.6 9.8 106 354-482 319-430 (480)
17 PHA03098 kelch-like protein; P 98.2 8.2E-06 1.8E-10 89.5 11.0 47 354-404 343-398 (534)
18 KOG0783 Uncharacterized conser 97.9 1.5E-05 3.3E-10 87.6 6.5 94 64-185 556-681 (1267)
19 KOG0511 Ankyrin repeat protein 97.7 1.5E-05 3.2E-10 81.0 1.4 133 75-242 302-441 (516)
20 KOG2838 Uncharacterized conser 97.1 9.5E-05 2.1E-09 72.3 -1.1 103 75-203 262-397 (401)
21 KOG1987 Speckle-type POZ prote 97.0 0.00028 6E-09 71.6 2.1 126 74-235 110-240 (297)
22 PLN02153 epithiospecifier prot 97.0 0.0037 8E-08 64.7 9.6 48 354-405 86-147 (341)
23 TIGR03547 muta_rot_YjhT mutatr 97.0 0.0028 6.2E-08 65.5 8.7 39 362-404 167-209 (346)
24 PF02214 BTB_2: BTB/POZ domain 96.9 0.0019 4.2E-08 53.9 5.7 86 69-185 1-94 (94)
25 TIGR03548 mutarot_permut cycli 96.9 0.0045 9.7E-08 63.5 9.2 48 354-405 124-181 (323)
26 smart00612 Kelch Kelch domain. 96.8 0.0018 3.8E-08 46.0 3.9 32 361-392 13-47 (47)
27 PRK14131 N-acetylneuraminic ac 96.7 0.0054 1.2E-07 64.5 8.8 39 362-404 188-230 (376)
28 TIGR03548 mutarot_permut cycli 96.7 0.0058 1.2E-07 62.7 8.7 47 354-404 73-132 (323)
29 KOG2716 Polymerase delta-inter 96.7 0.004 8.7E-08 60.6 6.6 91 70-191 8-103 (230)
30 TIGR03547 muta_rot_YjhT mutatr 96.6 0.014 3E-07 60.4 10.3 48 354-405 18-73 (346)
31 KOG2838 Uncharacterized conser 96.6 0.0013 2.7E-08 64.6 2.3 84 66-177 132-217 (401)
32 PLN02153 epithiospecifier prot 96.3 0.013 2.8E-07 60.6 8.4 39 362-404 158-202 (341)
33 PLN02193 nitrile-specifier pro 96.2 0.028 6.1E-07 60.9 10.4 48 354-405 229-288 (470)
34 PF11822 DUF3342: Domain of un 95.9 0.0037 8.1E-08 63.3 1.9 88 74-191 14-102 (317)
35 PLN02193 nitrile-specifier pro 95.7 0.061 1.3E-06 58.4 10.5 48 354-405 279-338 (470)
36 KOG4693 Uncharacterized conser 95.2 0.021 4.5E-07 56.4 4.1 49 352-404 87-148 (392)
37 PRK14131 N-acetylneuraminic ac 95.1 0.017 3.6E-07 60.8 3.5 38 364-405 313-353 (376)
38 cd03772 MATH_HAUSP Herpesvirus 94.9 0.13 2.9E-06 45.9 8.4 111 391-504 16-133 (137)
39 KOG1665 AFH1-interacting prote 94.7 0.06 1.3E-06 51.8 5.5 64 121-187 39-105 (302)
40 KOG3473 RNA polymerase II tran 94.6 0.075 1.6E-06 44.4 5.3 82 64-177 13-111 (112)
41 cd03774 MATH_SPOP Speckle-type 94.4 0.14 3.1E-06 45.8 7.2 109 391-505 22-138 (139)
42 PF13964 Kelch_6: Kelch motif 94.3 0.061 1.3E-06 39.2 3.8 33 381-417 1-36 (50)
43 PF13964 Kelch_6: Kelch motif 94.2 0.064 1.4E-06 39.1 3.8 29 354-382 12-50 (50)
44 PF01344 Kelch_1: Kelch motif; 94.1 0.086 1.9E-06 37.7 4.2 22 381-406 1-22 (47)
45 cd00121 MATH MATH (meprin and 93.4 0.25 5.3E-06 42.1 6.7 108 390-502 14-126 (126)
46 PF13854 Kelch_5: Kelch motif 93.4 0.078 1.7E-06 37.4 2.8 24 378-405 1-24 (42)
47 smart00512 Skp1 Found in Skp1 92.6 0.1 2.2E-06 44.6 2.9 72 75-178 13-104 (104)
48 PF00917 MATH: MATH domain; I 92.1 0.2 4.3E-06 42.8 4.2 98 397-503 17-119 (119)
49 PF13415 Kelch_3: Galactose ox 91.7 0.22 4.9E-06 36.1 3.5 30 361-390 17-49 (49)
50 PF07646 Kelch_2: Kelch motif; 91.2 0.19 4E-06 36.6 2.6 20 381-404 1-20 (49)
51 cd03775 MATH_Ubp21p Ubiquitin- 90.9 1 2.3E-05 40.0 7.7 106 391-501 14-133 (134)
52 KOG0379 Kelch repeat-containin 90.5 0.3 6.4E-06 53.3 4.5 41 362-406 138-184 (482)
53 PLN02772 guanylate kinase 90.4 0.46 9.9E-06 50.2 5.6 56 354-413 35-110 (398)
54 cd03773 MATH_TRIM37 Tripartite 89.7 0.92 2E-05 39.9 6.2 105 391-501 21-129 (132)
55 KOG1724 SCF ubiquitin ligase, 89.5 0.26 5.7E-06 45.6 2.6 56 133-191 45-125 (162)
56 KOG4693 Uncharacterized conser 89.3 0.49 1.1E-05 47.0 4.4 42 360-405 265-312 (392)
57 KOG0379 Kelch repeat-containin 89.2 0.67 1.5E-05 50.5 6.0 41 361-405 188-234 (482)
58 KOG2714 SETA binding protein S 88.6 0.71 1.5E-05 48.6 5.2 90 70-191 14-113 (465)
59 PF01344 Kelch_1: Kelch motif; 87.2 0.75 1.6E-05 32.6 3.3 25 354-378 12-43 (47)
60 PF01466 Skp1: Skp1 family, di 87.0 0.51 1.1E-05 38.1 2.6 33 164-197 14-46 (78)
61 PF11822 DUF3342: Domain of un 82.4 0.76 1.6E-05 46.9 1.9 66 180-251 60-125 (317)
62 COG5201 SKP1 SCF ubiquitin lig 77.6 1.5 3.3E-05 38.7 2.0 59 133-191 38-120 (158)
63 KOG1230 Protein containing rep 76.8 4.1 8.9E-05 43.0 5.1 40 361-404 205-251 (521)
64 PF13418 Kelch_4: Galactose ox 74.7 2.4 5.3E-05 30.4 2.1 21 381-405 1-22 (49)
65 PF03931 Skp1_POZ: Skp1 family 73.8 4.8 0.0001 30.9 3.7 48 74-154 11-58 (62)
66 KOG1778 CREB binding protein/P 73.8 1.2 2.5E-05 45.9 0.3 131 75-241 37-168 (319)
67 cd00270 MATH_TRAF_C Tumor Necr 70.2 38 0.00083 30.2 9.4 108 391-501 22-148 (149)
68 cd03776 MATH_TRAF6 Tumor Necro 69.5 18 0.00038 32.6 7.0 25 478-502 119-147 (147)
69 KOG1230 Protein containing rep 69.4 5.5 0.00012 42.0 4.0 38 363-404 98-141 (521)
70 PF07713 DUF1604: Protein of u 68.2 2 4.4E-05 35.3 0.5 16 462-477 23-38 (87)
71 smart00061 MATH meprin and TRA 66.8 20 0.00043 28.6 6.3 74 390-471 14-91 (95)
72 KOG0511 Ankyrin repeat protein 64.5 1.6 3.4E-05 45.4 -1.0 86 64-182 147-235 (516)
73 KOG4152 Host cell transcriptio 62.8 12 0.00026 40.6 5.1 49 361-413 292-355 (830)
74 PF07707 BACK: BTB And C-termi 59.0 14 0.0003 30.4 4.0 61 167-230 2-74 (103)
75 KOG4152 Host cell transcriptio 53.5 18 0.00039 39.3 4.5 39 362-404 229-273 (830)
76 KOG3840 Uncharaterized conserv 53.1 13 0.00027 37.8 3.1 58 121-179 125-185 (438)
77 COG3055 Uncharacterized protei 47.5 17 0.00038 37.7 3.2 39 362-404 112-155 (381)
78 KOG2715 Uncharacterized conser 47.5 28 0.00061 32.4 4.2 55 134-191 66-120 (210)
79 COG3002 Uncharacterized protei 41.6 11 0.00025 41.8 0.9 93 400-504 714-823 (880)
80 PF07250 Glyoxal_oxid_N: Glyox 36.7 38 0.00083 33.6 3.6 41 361-405 89-138 (243)
81 KOG2723 Uncharacterized conser 35.9 65 0.0014 31.5 5.0 67 121-190 38-107 (221)
82 cd03771 MATH_Meprin Meprin fam 33.4 2.4E+02 0.0052 26.2 8.2 31 471-501 132-166 (167)
83 KOG2075 Topoisomerase TOP1-int 32.5 75 0.0016 34.4 5.1 45 193-245 184-228 (521)
84 cd03781 MATH_TRAF4 Tumor Necro 29.4 3.1E+02 0.0066 24.8 8.2 24 478-501 126-153 (154)
85 PF00651 BTB: BTB/POZ domain; 28.2 58 0.0013 26.9 3.0 30 196-229 81-110 (111)
86 cd03780 MATH_TRAF5 Tumor Necro 24.4 1.2E+02 0.0025 27.7 4.3 17 393-409 24-42 (148)
87 PF03089 RAG2: Recombination a 23.0 5E+02 0.011 26.6 8.7 114 365-490 133-269 (337)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.3e-53 Score=463.61 Aligned_cols=379 Identities=21% Similarity=0.318 Sum_probs=321.9
Q ss_pred CcCCCCCCCccEEEEE--EEEEeeeeeeeccCccccccCCCccccccchhhhHHHHHHHHhhhhhcccCCcccCCccEEE
Q 010644 58 NIDPAWSMDLSTVLRV--KTVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVT 135 (505)
Q Consensus 58 ~~~~~~~~~~dv~~~v--~~~~~hr~iLaa~S~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~~~~v~ 135 (505)
+.+|..+.+|||++.+ ++|+|||.||||+||||++ ||+++++|+.+++|.
T Consensus 28 ~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFra----------------------------MFt~~l~e~~~~~i~ 79 (571)
T KOG4441|consen 28 NELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRA----------------------------MFTSGLKESKQKEIN 79 (571)
T ss_pred HHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHH----------------------------HhcCCcccccceEEE
Confidence 4456669999999999 4899999999999999999 999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHhcCCccCCccchHHHHHHHHhHHHhhhhHHHHhhhcccCccCcccHHHHHhhcchhhhcccc
Q 010644 136 LRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAV 215 (505)
Q Consensus 136 l~~~~~~~~~f~~ll~fiYtg~~~~~~~~~~~~ll~aA~~~~v~~l~~~C~~~L~~~~l~~~Ncl~il~~A~~~~~a~~~ 215 (505)
|. ++++.+++.+++|+|||++.|+. +|+++||.+|++||++.++++|++||.+ +++++||+++..+|+.+ ++
T Consensus 80 l~--~v~~~~l~~ll~y~Yt~~i~i~~-~nVq~ll~aA~~lQi~~v~~~C~~fL~~-~l~~~Nclgi~~~a~~~----~~ 151 (571)
T KOG4441|consen 80 LE--GVDPETLELLLDYAYTGKLEISE-DNVQELLEAASLLQIPEVVDACCEFLES-QLDPSNCLGIRRFAELH----SC 151 (571)
T ss_pred Ee--cCCHHHHHHHHHHhhcceEEech-HhHHHHHHHHHHhhhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhc----Cc
Confidence 99 89999999999999999999997 9999999999999999999999999999 99999999999999987 99
Q ss_pred hhHHHHHHHHHhhccccccccchhhcCCCHHHHHHhhcCCCccccchhhHHHHHHHhhhccCCChHHHHHHHhhhccccc
Q 010644 216 QPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLI 295 (505)
Q Consensus 216 ~~L~~~~~~fI~~nf~~v~~~~~eFl~L~~~~L~~LL~sd~L~V~sE~~V~~avl~Wi~~~~~~~~~R~~~l~~~LL~~V 295 (505)
.+|.+.+..||.+||.++.+ ++||+.||.+.+..+|++|+|+|.+|++||+++++|+++| .+.|+.++ +.++++|
T Consensus 152 ~~L~~~a~~~i~~~F~~v~~-~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d---~~~R~~~~-~~ll~~v 226 (571)
T KOG4441|consen 152 TELLEVADEYILQHFAEVSK-TEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHD---FEEREEHL-PALLEAV 226 (571)
T ss_pred HHHHHHHHHHHHHHHHHHhc-cHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcC---HhhHHHHH-HHHHHhc
Confidence 99999999999999999999 9999999999999999999999999999999999999999 77899999 9999999
Q ss_pred cCCCcChhhHhhhccCCCCC--ChhHHHHHHHHHhhhcCChhhHhhhhhhhhccccc-cceeeEEE-e------cCCCeE
Q 010644 296 RFPYMTCRKLKKVLTCNDFD--PELASKVVLESLFFKAETPYRQRALAAEEANSTYR-RFVERAYK-Y------RPVKVV 365 (505)
Q Consensus 296 Rf~lls~~~L~~~~~~~~l~--~~~~~~lv~ea~~~~~~~~~~~~~l~~~~t~~~pr-~~~~~ly~-~------~~~~~V 365 (505)
|+|+|++.+|.+.+...++. +..|++++.+|++|+..+ .+++.++.++++ || ...+.+|+ + ...+.|
T Consensus 227 r~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~-~~~~~~~~~~t~--~r~~~~~~l~~vGG~~~~~~~~~~v 303 (571)
T KOG4441|consen 227 RLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLP-QRRPVMQSPRTR--PRRSVSGKLVAVGGYNRQGQSLRSV 303 (571)
T ss_pred CccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCc-ccCccccCCCcc--cCcCCCCeEEEECCCCCCCccccee
Confidence 99999999999988888765 488999999999999854 445567888877 67 44567777 1 336789
Q ss_pred EEEeCCCCeEEe---ccccccceEEEeeCCeEeeecceeecCC---ccccceecccCCc-----------ceeEeEEEE-
Q 010644 366 EFELPRQQCVVY---LDLKREECAHLFPAGRIYSQAFHLGGQG---FFLSAHCNMDQQS-----------SFHCFGLFL- 427 (505)
Q Consensus 366 e~Ydp~~~~W~~---l~~~R~~~~~~~~~g~IY~~~~viGG~~---~~l~~~~~~~~~~-----------~~~~~g~~~- 427 (505)
++|||.++.|.. ||.+|.++++++++|+|| ++||+. ..++..+.||+.. .++.+|+..
T Consensus 304 e~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lY----v~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l 379 (571)
T KOG4441|consen 304 ECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLY----VVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL 379 (571)
T ss_pred EEecCCcCcEeecCCCCcccccccEEEECCEEE----EEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE
Confidence 999999999999 999999999999999999 999986 3566666665542 344445433
Q ss_pred ------eeecCCCce-eeee-eeeeeec----------CCchhhhccccceeEecCC-------eeeeeecCCCCCceeE
Q 010644 428 ------GMQEKGSVS-FAVD-YEFAARI----------KPTEEYVSKYKGNYTFTGG-------KAVGYRNLFGIPWTAF 482 (505)
Q Consensus 428 ------g~~~~~~~~-~~~~-~~~~~r~----------~~~~~f~~~~~~~~~~tg~-------~~~~~~~~~~~~~~~~ 482 (505)
..+.+|... .+|| |+..... +..---+......|.++|. .+++|+||.+-.|+..
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~ 459 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI 459 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec
Confidence 125566666 5677 6643332 1112223334556666642 1679999999999875
Q ss_pred Ee
Q 010644 483 MA 484 (505)
Q Consensus 483 ~~ 484 (505)
-.
T Consensus 460 ~~ 461 (571)
T KOG4441|consen 460 AP 461 (571)
T ss_pred CC
Confidence 43
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-47 Score=418.24 Aligned_cols=352 Identities=14% Similarity=0.177 Sum_probs=277.3
Q ss_pred CCCCCCCccEEEEEE---EEEeeeeeeeccCccccccCCCccccccchhhhHHHHHHHHhhhhhcccCCcccCC-ccEEE
Q 010644 60 DPAWSMDLSTVLRVK---TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESE-QRYVT 135 (505)
Q Consensus 60 ~~~~~~~~dv~~~v~---~~~~hr~iLaa~S~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~-~~~v~ 135 (505)
++..+.+|||++.|+ +|+|||+||||+|+||++ ||+++|+|+. +++|+
T Consensus 19 lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~a----------------------------mF~~~~~e~~~~~~v~ 70 (557)
T PHA02713 19 LLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRT----------------------------LFTTPMIIRDLVTRVN 70 (557)
T ss_pred HHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHH----------------------------HhcCCchhhccCceEE
Confidence 455689999999983 799999999999999999 9999999875 78999
Q ss_pred EecCCCCHHHHHHHHHHHhcCCccCCccchHHHHHHHHhHHHhhhhHHHHhhhcccCccCcccHHHHHhhcchhhhcccc
Q 010644 136 LRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAV 215 (505)
Q Consensus 136 l~~~~~~~~~f~~ll~fiYtg~~~~~~~~~~~~ll~aA~~~~v~~l~~~C~~~L~~~~l~~~Ncl~il~~A~~~~~a~~~ 215 (505)
|. ++++++|+.+|+|+|||+ ++. +|+++||.||++||++.|+++|++||.+ +++++||+.++.+|..+ .+
T Consensus 71 l~--~v~~~~~~~ll~y~Yt~~--i~~-~nv~~ll~aA~~lqi~~l~~~C~~~l~~-~l~~~NCl~i~~~~~~~----~~ 140 (557)
T PHA02713 71 LQ--MFDKDAVKNIVQYLYNRH--ISS-MNVIDVLKCADYLLIDDLVTDCESYIKD-YTNHDTCIYMYHRLYEM----SH 140 (557)
T ss_pred ec--cCCHHHHHHHHHHhcCCC--CCH-HHHHHHHHHHHHHCHHHHHHHHHHHHHh-hCCccchHHHHHHHHhc----cc
Confidence 98 999999999999999998 564 8999999999999999999999999999 89999999999877665 67
Q ss_pred hhHHHHHHHHHhhccccccccchhhcCCCHHHHHHhhcCCC-ccccchhhHHHHHHHhhhccCCChHHHHHHHhhhcccc
Q 010644 216 QPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDD-LQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRL 294 (505)
Q Consensus 216 ~~L~~~~~~fI~~nf~~v~~~~~eFl~L~~~~L~~LL~sd~-L~V~sE~~V~~avl~Wi~~~~~~~~~R~~~l~~~LL~~ 294 (505)
..|.++|.+||.+||.++.+ +++|++|+.+.+.++|++|+ |+|.+|++||+++++|++|| .++|+ ++ .+||++
T Consensus 141 ~~L~~~a~~~i~~~f~~v~~-~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d---~~~r~-~~-~~ll~~ 214 (557)
T PHA02713 141 IPIVKYIKRMLMSNIPTLIT-TDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYN---YITEE-QL-LCILSC 214 (557)
T ss_pred hHHHHHHHHHHHHHHHHHhC-ChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcC---HHHHH-HH-hhhHhh
Confidence 77999999999999999999 99999999999999999987 79999999999999999998 55554 46 699999
Q ss_pred ccCCCcChhhHhhhccCCCCC--ChhHHHHHHHHHhhhcCChhhHhhhhhhhhccccccceeeEEE-ec----CCCeEEE
Q 010644 295 IRFPYMTCRKLKKVLTCNDFD--PELASKVVLESLFFKAETPYRQRALAAEEANSTYRRFVERAYK-YR----PVKVVEF 367 (505)
Q Consensus 295 VRf~lls~~~L~~~~~~~~l~--~~~~~~lv~ea~~~~~~~~~~~~~l~~~~t~~~pr~~~~~ly~-~~----~~~~Ve~ 367 (505)
||||+|++.++. .+.++++. .+.|.+++.+++.++. + .||. .+++. ++ ....+++
T Consensus 215 VR~~~l~~~~~~-~~~~~~~i~~~~~c~~~l~~a~~~~~-------------~--~~r~--~~l~~~~g~~~~~~~~v~~ 276 (557)
T PHA02713 215 IDIQNLDKKSRL-LLYSNKTINMYPSCIQFLLDNKQNRN-------------I--IPRQ--LCLVCHDTKYNVCNPCILV 276 (557)
T ss_pred hhHhhcchhhhh-hhcchHHHHhhHHHHHHHhhhhhhcc-------------c--CCcc--eEEEEecCccccCCCCEEE
Confidence 999999999876 44444543 4788888888764321 1 1333 33443 22 2356899
Q ss_pred EeCCCCeEEe---ccccccceEEEeeCCeEeeecceeecCCc---cccceecccCCcceeEeEEEEeeecCCCceeeeee
Q 010644 368 ELPRQQCVVY---LDLKREECAHLFPAGRIYSQAFHLGGQGF---FLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDY 441 (505)
Q Consensus 368 Ydp~~~~W~~---l~~~R~~~~~~~~~g~IY~~~~viGG~~~---~l~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~ 441 (505)
|||.+++|.. ||.+|..+++++++|+|| ++||... .+.....+|+....+ .+-++++... .
T Consensus 277 yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IY----viGG~~~~~~~~~~v~~Yd~~~n~W--------~~~~~m~~~R-~ 343 (557)
T PHA02713 277 YNINTMEYSVISTIPNHIINYASAIVDNEII----IAGGYNFNNPSLNKVYKINIENKIH--------VELPPMIKNR-C 343 (557)
T ss_pred EeCCCCeEEECCCCCccccceEEEEECCEEE----EEcCCCCCCCccceEEEEECCCCeE--------eeCCCCcchh-h
Confidence 9999999998 889999999999999999 9999632 233334455543322 1222211111 1
Q ss_pred eeeeecCCchhhhccccceeEecCC------eeeeeecCCCCCceeE-------------EecCcceeecce
Q 010644 442 EFAARIKPTEEYVSKYKGNYTFTGG------KAVGYRNLFGIPWTAF-------------MADDSIYFINGN 494 (505)
Q Consensus 442 ~~~~r~~~~~~f~~~~~~~~~~tg~------~~~~~~~~~~~~~~~~-------------~~~~~~~~i~~~ 494 (505)
.+++ +....+.|.++|. .+++++|+.+..|+.+ .-++..|.|.|.
T Consensus 344 ~~~~--------~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~ 407 (557)
T PHA02713 344 RFSL--------AVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGR 407 (557)
T ss_pred ceeE--------EEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCC
Confidence 1111 2223567888753 2578999999999852 225677777663
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=3.6e-46 Score=401.59 Aligned_cols=286 Identities=16% Similarity=0.199 Sum_probs=232.5
Q ss_pred CCCCCCccEEEEE-EEEEeeeeeeeccCccccccCCCccccccchhhhHHHHHHHHhhhhhcccCCcccCCccEEEEecC
Q 010644 61 PAWSMDLSTVLRV-KTVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLRIH 139 (505)
Q Consensus 61 ~~~~~~~dv~~~v-~~~~~hr~iLaa~S~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~~~~v~l~~~ 139 (505)
+.++.+|||++.+ ++|+|||+||||+||||++ ||+++|+|+.+ +|++...
T Consensus 17 ~~~~~~~~~~~~~~~~~~~HR~VLAa~S~YFra----------------------------MF~~~~~Es~~-~v~~~~~ 67 (480)
T PHA02790 17 SMTKKFKTIIEAIGGNIIVNSTILKKLSPYFRT----------------------------HLRQKYTKNKD-PVTRVCL 67 (480)
T ss_pred HhhhhhceEEEEcCcEEeeehhhhhhcCHHHHH----------------------------HhcCCcccccc-ceEEEec
Confidence 4458899999998 5899999999999999999 99999999954 5666423
Q ss_pred CCCHHHHHHHHHHHhcCCccCCccchHHHHHHHHhHHHhhhhHHHHhhhcccCccCcccHHHHHhhcchhhhcccchhHH
Q 010644 140 ASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLT 219 (505)
Q Consensus 140 ~~~~~~f~~ll~fiYtg~~~~~~~~~~~~ll~aA~~~~v~~l~~~C~~~L~~~~l~~~Ncl~il~~A~~~~~a~~~~~L~ 219 (505)
++++++|+.+|+|+|||++.++. +|++++|.||++||+++++++|++||.+ +|+++||++++.+|+.| ++++|.
T Consensus 68 ~v~~~~l~~lldy~YTg~l~it~-~nV~~ll~aA~~Lqi~~v~~~C~~fL~~-~l~~~NCl~i~~~A~~y----~~~~L~ 141 (480)
T PHA02790 68 DLDIHSLTSIVIYSYTGKVYIDS-HNVVNLLRASILTSVEFIIYTCINFILR-DFRKEYCVECYMMGIEY----GLSNLL 141 (480)
T ss_pred CcCHHHHHHHHHhheeeeEEEec-ccHHHHHHHHHHhChHHHHHHHHHHHHh-hCCcchHHHHHHHHHHh----CHHHHH
Confidence 89999999999999999999996 9999999999999999999999999999 99999999999999998 999999
Q ss_pred HHHHHHHhhccccccccc--hhhcCCCHHHHHHhhcCCCccccchhhHHHHHHHhhhccCCChHHHHHHHhhhcccc-cc
Q 010644 220 DTAKQFLAARYKDISKFQ--EEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRL-IR 296 (505)
Q Consensus 220 ~~~~~fI~~nf~~v~~~~--~eFl~L~~~~L~~LL~sd~L~V~sE~~V~~avl~Wi~~~~~~~~~R~~~l~~~LL~~-VR 296 (505)
++|.+||.+||.++.+ + ++|+.||. .+||++|+|+|.+|++||+++++|++++ ..|...+ .+++++ ||
T Consensus 142 ~~a~~fi~~nF~~v~~-~~~~ef~~L~~---~~lLssd~L~v~~Ee~V~eav~~Wl~~~----~~~~~~l-~~~vr~~ir 212 (480)
T PHA02790 142 CHTKDFIAKHFLELED-DIIDNFDYLSM---KLILESDELNVPDEDYVVDFVIKWYMKR----RNRLGNL-LLLIKNVIR 212 (480)
T ss_pred HHHHHHHHHhHHHHhc-ccchhhhhCCH---HHhcccccCCCccHHHHHHHHHHHHHhh----HHHHHHH-HHHHHhcCC
Confidence 9999999999999998 6 89999996 6899999999999999999999999986 3466565 566666 89
Q ss_pred CCCcChhhHhhhccCCCCCChhHHHHHHHHHhhhcCChhhH----hhh-hhhhh-------ccc-cccceeeEEE-e---
Q 010644 297 FPYMTCRKLKKVLTCNDFDPELASKVVLESLFFKAETPYRQ----RAL-AAEEA-------NST-YRRFVERAYK-Y--- 359 (505)
Q Consensus 297 f~lls~~~L~~~~~~~~l~~~~~~~lv~ea~~~~~~~~~~~----~~l-~~~~t-------~~~-pr~~~~~ly~-~--- 359 (505)
+++|++..+.+ +..++.++..++.....+. +.. ....+ ... .....+.+|+ +
T Consensus 213 ~~~l~~~~l~~-----------~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyviGG~~ 281 (480)
T PHA02790 213 SNYLSPRGINN-----------VKWILDCTKIFHCDKQPRKSYKYPFIEYPMNMDQIIDIFHMCTSTHVGEVVYLIGGWM 281 (480)
T ss_pred hhhCCHHHHHH-----------HHHHHHHHHHhhccccccccccccccccCCcccceeeccCCcceEEECCEEEEEcCCC
Confidence 99999888753 1334444444332110000 000 00000 000 0012245676 2
Q ss_pred --cCCCeEEEEeCCCCeEEe---ccccccceEEEeeCCeEeeecceeecCC
Q 010644 360 --RPVKVVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQAFHLGGQG 405 (505)
Q Consensus 360 --~~~~~Ve~Ydp~~~~W~~---l~~~R~~~~~~~~~g~IY~~~~viGG~~ 405 (505)
...+++++|||.+++|.. |+.+|..+++++++|+|| ++||..
T Consensus 282 ~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iY----viGG~~ 328 (480)
T PHA02790 282 NNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLY----VVGGLP 328 (480)
T ss_pred CCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEE----EECCcC
Confidence 245789999999999999 889999999999999999 999963
No 4
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=9.6e-45 Score=395.65 Aligned_cols=308 Identities=15% Similarity=0.229 Sum_probs=254.3
Q ss_pred CCCCccEEEEE----EEEEeeeeeeeccCccccccCCCccccccchhhhHHHHHHHHhhhhhcccCCcccCCccEEEEec
Q 010644 63 WSMDLSTVLRV----KTVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLRI 138 (505)
Q Consensus 63 ~~~~~dv~~~v----~~~~~hr~iLaa~S~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~~~~v~l~~ 138 (505)
.+.+|||++.+ ++|+|||.|||++|+||++ ||+++|+ +.+|+|.
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~----------------------------mf~~~~~---~~~i~l~- 53 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKK----------------------------MFKNNFK---ENEINLN- 53 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHH----------------------------HHhCCCC---CceEEec-
Confidence 47899999997 4899999999999999999 9999988 5788887
Q ss_pred CCCCHHHHHHHHHHHhcCCccCCccchHHHHHHHHhHHHhhhhHHHHhhhcccCccCcccHHHHHhhcchhhhcccchhH
Q 010644 139 HASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPL 218 (505)
Q Consensus 139 ~~~~~~~f~~ll~fiYtg~~~~~~~~~~~~ll~aA~~~~v~~l~~~C~~~L~~~~l~~~Ncl~il~~A~~~~~a~~~~~L 218 (505)
+ ++++|+.+|+|+|||++.++. +++.+||.+|++||++.|++.|+++|.+ .++.+||+.++.+|+.| ++..|
T Consensus 54 -~-~~~~~~~~l~y~Ytg~~~i~~-~~~~~ll~~A~~l~~~~l~~~C~~~l~~-~l~~~nc~~~~~~a~~~----~~~~L 125 (534)
T PHA03098 54 -I-DYDSFNEVIKYIYTGKINITS-NNVKDILSIANYLIIDFLINLCINYIIK-IIDDNNCIDIYRFSFFY----GCKKL 125 (534)
T ss_pred -C-CHHHHHHHHHHhcCCceEEcH-HHHHHHHHHHHHhCcHHHHHHHHHHHHH-hCCHhHHHHHHHHHHHc----CcHHH
Confidence 7 999999999999999999996 9999999999999999999999999999 89999999999999987 99999
Q ss_pred HHHHHHHHhhccccccccchhhcCCCHHHHHHhhcCCCccccchhhHHHHHHHhhhccCCChHHHHHHHhhhccccccCC
Q 010644 219 TDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFP 298 (505)
Q Consensus 219 ~~~~~~fI~~nf~~v~~~~~eFl~L~~~~L~~LL~sd~L~V~sE~~V~~avl~Wi~~~~~~~~~R~~~l~~~LL~~VRf~ 298 (505)
.++|.+||.+||.++.+ +++|.+|+.+.+..||++|+|+|.+|++||+++++|++++ .++|.+++ ++||++|||+
T Consensus 126 ~~~~~~~i~~nf~~v~~-~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~---~~~r~~~~-~~ll~~vR~~ 200 (534)
T PHA03098 126 YSAAYNYIRNNIELIYN-DPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSK---KNNKYKDI-CLILKVLRIT 200 (534)
T ss_pred HHHHHHHHHHHHHHHhc-CchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcC---hhhhHhHH-HHHHhhcccc
Confidence 99999999999999999 9999999999999999999999999999999999999999 68899999 8999999999
Q ss_pred CcChhhHhhhcc------CCCCC-ChhHHHHHHHHHhhhcCC-hhhHh---hh----------------h--hhh---hc
Q 010644 299 YMTCRKLKKVLT------CNDFD-PELASKVVLESLFFKAET-PYRQR---AL----------------A--AEE---AN 346 (505)
Q Consensus 299 lls~~~L~~~~~------~~~l~-~~~~~~lv~ea~~~~~~~-~~~~~---~l----------------~--~~~---t~ 346 (505)
+|++++|.++.. ++++. ...|...+.++..+.... +.... .+ . ..+ ..
T Consensus 201 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 280 (534)
T PHA03098 201 FLSEEGIKKLKRWKLRIKKKKIVFNKRCIKIIYSKKYNLNKILPRSSTFGSIIYIHITMSIFTYNYITNYSPLSEINTII 280 (534)
T ss_pred ccCHHHHHHHHHHHhhcCCcceeccccchHHHHHHHhcccCCCcCccCCCcceEeecccchhhceeeecchhhhhccccc
Confidence 999999998764 44443 456778887776653210 00000 00 0 000 00
Q ss_pred ccc-ccc------eeeEEE-ec------CCCeEEEEeCCCCeEEe---ccccccceEEEeeCCeEeeecceeecCC--cc
Q 010644 347 STY-RRF------VERAYK-YR------PVKVVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQAFHLGGQG--FF 407 (505)
Q Consensus 347 ~~p-r~~------~~~ly~-~~------~~~~Ve~Ydp~~~~W~~---l~~~R~~~~~~~~~g~IY~~~~viGG~~--~~ 407 (505)
..| +.. .+.+|+ ++ ..+.+.+|||.+++|.. |+.+|..|++++.+|+|| ++||.. ..
T Consensus 281 ~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~ly----v~GG~~~~~~ 356 (534)
T PHA03098 281 DIHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIY----VIGGIYNSIS 356 (534)
T ss_pred CccccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEE----EEeCCCCCEe
Confidence 011 111 134666 21 34579999999999988 778999999999999999 999974 22
Q ss_pred ccceecccCCcc
Q 010644 408 LSAHCNMDQQSS 419 (505)
Q Consensus 408 l~~~~~~~~~~~ 419 (505)
+.....+|+...
T Consensus 357 ~~~v~~yd~~~~ 368 (534)
T PHA03098 357 LNTVESWKPGES 368 (534)
T ss_pred cceEEEEcCCCC
Confidence 333445666433
No 5
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.95 E-value=2.5e-28 Score=244.13 Aligned_cols=227 Identities=21% Similarity=0.315 Sum_probs=198.7
Q ss_pred hcCcCCCCCCCccEEEEEE--EEEeeeeeeeccCccccccCCCccccccchhhhHHHHHHHHhhhhhcccCCcccCCccE
Q 010644 56 TGNIDPAWSMDLSTVLRVK--TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRY 133 (505)
Q Consensus 56 ~~~~~~~~~~~~dv~~~v~--~~~~hr~iLaa~S~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~~~~ 133 (505)
+.+++.+ ...+||+|.|+ +|+|||.||||||.|||+ |+.+||+|+.|..
T Consensus 35 ~~~l~~~-e~y~DVtfvve~~rfpAHRvILAaRs~yFRA----------------------------lLYgGm~Es~q~~ 85 (620)
T KOG4350|consen 35 FDELFTS-EDYSDVTFVVEDTRFPAHRVILAARSSYFRA----------------------------LLYGGMQESHQQL 85 (620)
T ss_pred HHHHhhc-CcccceEEEEeccccchhhhhHHHHHHHHHH----------------------------HHhhhhhhhhhcc
Confidence 4344333 66889999994 799999999999999999 9999999999999
Q ss_pred EEEecCCCCHHHHHHHHHHHhcCCccCCc--cchHHHHHHHHhHHHhhhhHHHHhhhcccCccCcccHHHHHhhcchhhh
Q 010644 134 VTLRIHASEEAALMELLNFMYSSTLSTTT--PTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLM 211 (505)
Q Consensus 134 v~l~~~~~~~~~f~~ll~fiYtg~~~~~~--~~~~~~ll~aA~~~~v~~l~~~C~~~L~~~~l~~~Ncl~il~~A~~~~~ 211 (505)
|+|+ +-..++|+.+|+|||||++.+.. .+.+++.|.+|++|+...|..+.++||++ .+..+|++.+++.|..|
T Consensus 86 ipLq--~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~-iL~~~NvCmifdaA~ly-- 160 (620)
T KOG4350|consen 86 IPLQ--ETNSEAFRALLRYIYTGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKE-ILKNENVCMIFDAAYLY-- 160 (620)
T ss_pred cccc--cccHHHHHHHHHHHhhcceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHcccceeeeeeHHHHh--
Confidence 9998 78899999999999999998653 26689999999999999999999999999 79999999999999887
Q ss_pred cccchhHHHHHHHHHhhccccccccchhhcCCCHHHHHHhhcCCCccccchhhHHHHHHHhhhccCCChHHHHHHHhhhc
Q 010644 212 ADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRL 291 (505)
Q Consensus 212 a~~~~~L~~~~~~fI~~nf~~v~~~~~eFl~L~~~~L~~LL~sd~L~V~sE~~V~~avl~Wi~~~~~~~~~R~~~l~~~L 291 (505)
+.++|.+.|..|+-+|..++.. ++.|..|+.+.|.++|.+|..- .-|.++|.|+.+|-++| ..+ .. +.+
T Consensus 161 --~l~~Lt~~C~mfmDrnA~~lL~-~~sFn~LSk~sL~e~l~RDsFf-ApE~~IFlAv~~W~~~N---ske---~~-k~~ 229 (620)
T KOG4350|consen 161 --QLTDLTDYCMMFMDRNADQLLE-DPSFNRLSKDSLKELLARDSFF-APELKIFLAVRSWHQNN---SKE---AS-KVL 229 (620)
T ss_pred --cchHHHHHHHHHHhcCHHhhhc-CcchhhhhHHHHHHHHhhhccc-chHHHHHHHHHHHHhcC---chh---hH-HHH
Confidence 9999999999999999999999 9999999999999999999876 47999999999999998 322 22 678
Q ss_pred cccccCCCcChhhHhhhccCCCCCChhHHHHHHHHHhhh
Q 010644 292 GRLIRFPYMTCRKLKKVLTCNDFDPELASKVVLESLFFK 330 (505)
Q Consensus 292 L~~VRf~lls~~~L~~~~~~~~l~~~~~~~lv~ea~~~~ 330 (505)
++.||+|+|+.+.|..++.+..+.. .+.|.+|....
T Consensus 230 ~~~VRLPLm~lteLLnvVRPsGlls---pD~iLDAI~vr 265 (620)
T KOG4350|consen 230 LELVRLPLMTLTELLNVVRPSGLLS---PDTILDAIEVR 265 (620)
T ss_pred HHHHhhhhccHHHHHhccCcccCcC---HHHHHHHHHhh
Confidence 9999999999999999998877754 23444555443
No 6
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.87 E-value=5.2e-22 Score=203.56 Aligned_cols=215 Identities=24% Similarity=0.373 Sum_probs=192.1
Q ss_pred CCCCCccEEEEEE-------EEEeeeeeeeccCccccccCCCccccccchhhhHHHHHHHHhhhhhcccCCcccCCccEE
Q 010644 62 AWSMDLSTVLRVK-------TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYV 134 (505)
Q Consensus 62 ~~~~~~dv~~~v~-------~~~~hr~iLaa~S~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~~~~v 134 (505)
.+...+|+.|.|+ .+||||.|||..|.+|.+ ||++++.|+...+|
T Consensus 110 ~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFda----------------------------Mf~g~~a~~~s~ei 161 (521)
T KOG2075|consen 110 NNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDA----------------------------MFYGGLAEDASLEI 161 (521)
T ss_pred cCcccceeEEEeccCCCcccccchhhhhhhcchHHHHH----------------------------HhccCcccccCcee
Confidence 3377899999984 599999999999999999 99999999877888
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCccCCccchHHHHHHHHhHHHhhhhHHHHhhhcccCccCcccHHHHHhh-cchhhhcc
Q 010644 135 TLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDL-PSSVLMAD 213 (505)
Q Consensus 135 ~l~~~~~~~~~f~~ll~fiYtg~~~~~~~~~~~~ll~aA~~~~v~~l~~~C~~~L~~~~l~~~Ncl~il~~-A~~~~~a~ 213 (505)
.++ +++|++|..+|+|||+..+.+.. ++++.+|.+|++|-++.|.+.|.+||+. ++.+.|.+..+-. |..+
T Consensus 162 ~lp--dvepaaFl~~L~flYsdev~~~~-dtvi~tl~~AkKY~VpaLer~CVkflr~-~l~~~naf~~L~q~A~lf---- 233 (521)
T KOG2075|consen 162 RLP--DVEPAAFLAFLRFLYSDEVKLAA-DTVITTLYAAKKYLVPALERQCVKFLRK-NLMADNAFLELFQRAKLF---- 233 (521)
T ss_pred ecC--CcChhHhHHHHHHHhcchhhhhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHH-hcCChHHHHHHHHHHHhh----
Confidence 888 99999999999999999999985 9999999999999999999999999999 7888888777655 6655
Q ss_pred cchhHHHHHHHHHhhccccccccchhhcCCC--HHHHHHhhcCCCccccchhhHHHHHHHhhhccCC------ChHHHHH
Q 010644 214 AVQPLTDTAKQFLAARYKDISKFQEEVLNLP--LAGIEAVLASDDLQIASEDAVYDFALKWARTHYP------KLEERRE 285 (505)
Q Consensus 214 ~~~~L~~~~~~fI~~nf~~v~~~~~eFl~L~--~~~L~~LL~sd~L~V~sE~~V~~avl~Wi~~~~~------~~~~R~~ 285 (505)
+-++|.+.|++-|..+|.+... .+.|.++. .+.++++|+++.|.+. |..+|+|+++|++...+ +.+++++
T Consensus 234 ~ep~Li~~c~e~id~~~~~al~-~EGf~did~~~dt~~evl~r~~l~~~-e~~lfeA~lkw~~~e~~rs~~~~~~~~~~~ 311 (521)
T KOG2075|consen 234 DEPSLISICLEVIDKSFEDALT-PEGFCDIDSTRDTYEEVLRRDTLEAR-EFRLFEAALKWAEAECQRSGGPVNGQNKRK 311 (521)
T ss_pred cCHHHHHHHHHHhhhHHHhhhC-ccceeehhhHHHHHHHHHhhcccchh-HHHHHHHHHhhccCcchhhcCCCCccchhh
Confidence 8899999999999999999999 99999988 9999999999999985 99999999999998743 2456778
Q ss_pred HHhhhccccccCCCcChhhHhhhccCCCCC
Q 010644 286 ILGSRLGRLIRFPYMTCRKLKKVLTCNDFD 315 (505)
Q Consensus 286 ~l~~~LL~~VRf~lls~~~L~~~~~~~~l~ 315 (505)
.+ .+.+..||||+|..+++..-+++..+.
T Consensus 312 vl-~~~l~lirfp~m~~Eefa~~~e~sgIl 340 (521)
T KOG2075|consen 312 VL-GRALSLIRFPFMNIEEFARGVEQSGIL 340 (521)
T ss_pred hh-hheeeeecccccchhhhccCccccCCc
Confidence 88 799999999999999988666655553
No 7
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.73 E-value=1.7e-17 Score=167.04 Aligned_cols=178 Identities=17% Similarity=0.292 Sum_probs=166.7
Q ss_pred CCCCccEEEEE--EEEEeeeeeeeccCccccccCCCccccccchhhhHHHHHHHHhhhhhcccCCcccCCccEEEEecCC
Q 010644 63 WSMDLSTVLRV--KTVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLRIHA 140 (505)
Q Consensus 63 ~~~~~dv~~~v--~~~~~hr~iLaa~S~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~~~~v~l~~~~ 140 (505)
.+..+||++.. .+.+.||.-| ..|+||++ ||+|.++|+.+..|.|.|++
T Consensus 66 q~enSDv~l~alg~eWrlHk~yL-~QS~yf~s----------------------------mf~Gtw~es~~~iIqleI~D 116 (488)
T KOG4682|consen 66 QGENSDVILEALGFEWRLHKPYL-FQSEYFKS----------------------------MFSGTWKESSMNIIQLEIPD 116 (488)
T ss_pred cCCCcceehhhccceeeeeeeee-eccHHHHH----------------------------HhccccChhhCceEEEEcCC
Confidence 48889999987 5899999999 58999999 99999999999988888765
Q ss_pred --CCHHHHHHHHHHHhcCCccCCccchHHHHHHHHhHHHhhhhHHHHhhhcccCccCcccHHHHHhhcchhhhcccchhH
Q 010644 141 --SEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPL 218 (505)
Q Consensus 141 --~~~~~f~~ll~fiYtg~~~~~~~~~~~~ll~aA~~~~v~~l~~~C~~~L~~~~l~~~Ncl~il~~A~~~~~a~~~~~L 218 (505)
++.++|..++--+|.+++.|+. +.++.++.+|.++++++|.+.|.+.|.+ .|++.|++.+|+.+..| +.+.+
T Consensus 117 p~Id~~al~~a~gsLY~dEveI~l-~dv~gvlAaA~~lqldgl~qrC~evMie-~lspkta~~yYea~ckY----gle~v 190 (488)
T KOG4682|consen 117 PNIDVVALQVAFGSLYRDEVEIKL-SDVVGVLAAACLLQLDGLIQRCGEVMIE-TLSPKTACGYYEAACKY----GLESV 190 (488)
T ss_pred CcccHHHHHHHHhhhhhhheeccH-HHHHHHHHHHHHHHHhhHHHHHHHHHHH-hcChhhhhHhhhhhhhh----hhHHH
Confidence 8999999999999999999996 9999999999999999999999999999 89999999999999988 99999
Q ss_pred HHHHHHHHhhccccccccchhhcCCCHHHHHHhhcCCCccccc-hhhHHHHHHHhhhcc
Q 010644 219 TDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIAS-EDAVYDFALKWARTH 276 (505)
Q Consensus 219 ~~~~~~fI~~nf~~v~~~~~eFl~L~~~~L~~LL~sd~L~V~s-E~~V~~avl~Wi~~~ 276 (505)
++.|.+++..|+-.+.. ..-+.+++.+.+..++.|++|-|-+ |.++|..+..|+--.
T Consensus 191 k~kc~ewl~~nl~~i~~-~q~l~ei~~~Lm~~ll~SpnLfvmq~EfdLyttlk~WmfLq 248 (488)
T KOG4682|consen 191 KKKCLEWLLNNLMTIQN-VQLLKEISINLMKQLLGSPNLFVMQVEFDLYTTLKKWMFLQ 248 (488)
T ss_pred HHHHHHHHHHhhHhhhh-HHHHHhcCHHHHHHHhCCCCeEEEEeeehHHHHHHHHHHhh
Confidence 99999999999999988 7788899999999999999998877 999999999998643
No 8
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=99.70 E-value=8.2e-18 Score=143.16 Aligned_cols=102 Identities=32% Similarity=0.619 Sum_probs=92.8
Q ss_pred HHHHHhhcchhhhcccchhHHHHHHHHHhhccccccccchhhcCCCHHHHHHhhcCCCccccchhhHHHHHHHhhhccCC
Q 010644 199 ALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYP 278 (505)
Q Consensus 199 cl~il~~A~~~~~a~~~~~L~~~~~~fI~~nf~~v~~~~~eFl~L~~~~L~~LL~sd~L~V~sE~~V~~avl~Wi~~~~~ 278 (505)
|+.++.+|..| ++.+|.++|.+||..||.++.+ +++|.+||.+.+..||++++++|.+|.+||+++++|++++
T Consensus 1 C~~i~~~A~~~----~~~~L~~~~~~~i~~nf~~v~~-~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~-- 73 (103)
T PF07707_consen 1 CLSIYRLAEKY----GLEELAEACLRFIAKNFNEVSK-SDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHN-- 73 (103)
T ss_dssp HHHHHHHHHHT----T-HHHHHHHHHHHHHTHHHHTT-SHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCT--
T ss_pred ChhHHHHHHHc----ChHHHHHHHHHHHHHHHHHHcc-chhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhC--
Confidence 89999999987 9999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhhhccccccCCCcChhhHhhhc
Q 010644 279 KLEERREILGSRLGRLIRFPYMTCRKLKKVL 309 (505)
Q Consensus 279 ~~~~R~~~l~~~LL~~VRf~lls~~~L~~~~ 309 (505)
++.|.+++ ++|+++|||++|++++|.+.+
T Consensus 74 -~~~r~~~~-~~Ll~~iR~~~l~~~~L~~~v 102 (103)
T PF07707_consen 74 -PENREEHL-KELLSCIRFPLLSPEELQNVV 102 (103)
T ss_dssp -HHHHTTTH-HHHHCCCHHHCT-HHHHHHCC
T ss_pred -HHHHHHHH-HHHHHhCCcccCCHHHHHHHH
Confidence 77799998 899999999999999998865
No 9
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.59 E-value=2.3e-15 Score=138.97 Aligned_cols=155 Identities=15% Similarity=0.299 Sum_probs=134.4
Q ss_pred CCCCccEEEEEE-----EEEeeeeeeeccCccccccCCCccccccchhhhHHHHHHHHhhhhhcccCCcccCCccEEEEe
Q 010644 63 WSMDLSTVLRVK-----TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLR 137 (505)
Q Consensus 63 ~~~~~dv~~~v~-----~~~~hr~iLaa~S~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~~~~v~l~ 137 (505)
...++|+.|.++ .++|||-||||||++. -|.|+-.|. +.+..+.
T Consensus 63 k~qfSDlk~K~~gns~k~i~AHKfVLAARsD~W------------------------------kfaN~~dek-se~~~~d 111 (280)
T KOG4591|consen 63 KEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFW------------------------------KFANGGDEK-SEELDLD 111 (280)
T ss_pred cccccceeEEecCCccccCchhhhhhhhhcchh------------------------------hhccCCCcc-hhhhccc
Confidence 377899999983 5999999999999985 455654332 3444554
Q ss_pred cCCCCHHHHHHHHHHHhcCCccCCc-cchHHHHHHHHhHHHhhhhHHHHhhhcccCccCcccHHHHHhhcchhhhcccch
Q 010644 138 IHASEEAALMELLNFMYSSTLSTTT-PTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQ 216 (505)
Q Consensus 138 ~~~~~~~~f~~ll~fiYtg~~~~~~-~~~~~~ll~aA~~~~v~~l~~~C~~~L~~~~l~~~Ncl~il~~A~~~~~a~~~~ 216 (505)
++++++|..+++||||.++.+.. .+.+.++...|+.|+++-|++.|++-+.. .++++||+.++++|+.. +..
T Consensus 112 --Dad~Ea~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a-~l~V~NCIk~Ye~AEe~----n~~ 184 (280)
T KOG4591|consen 112 --DADFEAFHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGA-LLHVDNCIKFYEFAEEL----NAR 184 (280)
T ss_pred --ccCHHHHHHhheeeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HhhHhhHHHHHHHHHHh----hHH
Confidence 99999999999999999999754 24578999999999999999999999999 69999999999999987 899
Q ss_pred hHHHHHHHHHhhccccccccchhhcCCCHHHHHHhhcCCCc
Q 010644 217 PLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDL 257 (505)
Q Consensus 217 ~L~~~~~~fI~~nf~~v~~~~~eFl~L~~~~L~~LL~sd~L 257 (505)
.|...|...|+.+..++-+ .+|.++++..+..++++..-
T Consensus 185 qL~n~~~eiIA~~W~dL~~--a~FaqMs~aLLYklId~kTe 223 (280)
T KOG4591|consen 185 QLMNVAAEIIAGAWDDLGK--ADFAQMSAALLYKLIDGKTE 223 (280)
T ss_pred HHHHHHHHHHHhhccccCh--HHHHhccHHHHHHHHcCCCc
Confidence 9999999999999999876 89999999999999987643
No 10
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=99.58 E-value=2.7e-15 Score=126.51 Aligned_cols=99 Identities=28% Similarity=0.512 Sum_probs=90.7
Q ss_pred HHHHHhhcchhhhcccchhHHHHHHHHHhhccccccccchhhcCCCHHHHHHhhcCCCccccchhhHHHHHHHhhhccCC
Q 010644 199 ALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYP 278 (505)
Q Consensus 199 cl~il~~A~~~~~a~~~~~L~~~~~~fI~~nf~~v~~~~~eFl~L~~~~L~~LL~sd~L~V~sE~~V~~avl~Wi~~~~~ 278 (505)
|+.++.+|+.| ++..|.++|.+||.+||..+.+ +++|.+||.+.+..+|++|+++|.+|.++|+++++|++++
T Consensus 1 c~~i~~~a~~~----~~~~L~~~~~~~i~~nf~~~~~-~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~-- 73 (101)
T smart00875 1 CLGIRRFAELY----GLEELLEKALRFILKNFLEVAQ-SEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHD-- 73 (101)
T ss_pred CHhHHHHHHHh----ChHHHHHHHHHHHHHHHHHHhc-CcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCC--
Confidence 67788888776 9999999999999999999999 8999999999999999999999889999999999999998
Q ss_pred ChHHHHHHHhhhccccccCCCcChhhHhh
Q 010644 279 KLEERREILGSRLGRLIRFPYMTCRKLKK 307 (505)
Q Consensus 279 ~~~~R~~~l~~~LL~~VRf~lls~~~L~~ 307 (505)
...|. ++ ..++++|||++|+++.|.+
T Consensus 74 -~~~~~-~~-~~ll~~ir~~~~~~~~l~~ 99 (101)
T smart00875 74 -PERRR-HL-PELLSHVRFPLLSPEYLLE 99 (101)
T ss_pred -HHHHH-HH-HHHHHhCCCCCCCHHHHHh
Confidence 54444 77 8999999999999998865
No 11
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.57 E-value=1.5e-15 Score=130.53 Aligned_cols=97 Identities=26% Similarity=0.474 Sum_probs=85.2
Q ss_pred CCCccEEEEEE---EEEeeeeeeeccCccccccCCCccccccchhhhHHHHHHHHhhhhhcccCC-cccCCccEEEEecC
Q 010644 64 SMDLSTVLRVK---TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNG-MRESEQRYVTLRIH 139 (505)
Q Consensus 64 ~~~~dv~~~v~---~~~~hr~iLaa~S~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~es~~~~v~l~~~ 139 (505)
+.+||+++.++ +|+|||.||+++|+||++ ||.+. +.+.....+.+.
T Consensus 8 ~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~----------------------------~~~~~~~~~~~~~~i~~~-- 57 (111)
T PF00651_consen 8 NEFSDVTIRVGDGKTFYVHKNILAARSPYFRN----------------------------LFEGSKFKESTVPEISLP-- 57 (111)
T ss_dssp TTS--EEEEETTTEEEEE-HHHHHHHBHHHHH----------------------------HHTTTTSTTSSEEEEEET--
T ss_pred CCCCCEEEEECCCEEEeechhhhhccchhhhh----------------------------cccccccccccccccccc--
Confidence 67899999995 799999999999999999 99987 566555666666
Q ss_pred CCCHHHHHHHHHHHhcCCccCC-ccchHHHHHHHHhHHHhhhhHHHHhhhccc
Q 010644 140 ASEEAALMELLNFMYSSTLSTT-TPTALLDVLMAADKFEVASCMRYCSRLLRN 191 (505)
Q Consensus 140 ~~~~~~f~~ll~fiYtg~~~~~-~~~~~~~ll~aA~~~~v~~l~~~C~~~L~~ 191 (505)
++++++|+.+++|+|+|++.++ . +++.+++.+|++|+++.|++.|.++|.+
T Consensus 58 ~~~~~~~~~~l~~~Y~~~~~~~~~-~~~~~ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 58 DVSPEAFEAFLEYMYTGEIEINSD-ENVEELLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp TSCHHHHHHHHHHHHHSEEEEE-T-TTHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCcccCCHH-HHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 9999999999999999999997 6 8999999999999999999999999875
No 12
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.48 E-value=3e-14 Score=116.17 Aligned_cols=88 Identities=27% Similarity=0.474 Sum_probs=80.6
Q ss_pred cEEEEE--EEEEeeeeeeeccCccccccCCCccccccchhhhHHHHHHHHhhhhhcccCCcccCCccEEEEecCCCCHHH
Q 010644 68 STVLRV--KTVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLRIHASEEAA 145 (505)
Q Consensus 68 dv~~~v--~~~~~hr~iLaa~S~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~~~~v~l~~~~~~~~~ 145 (505)
|+++.+ +.|++||.+|+++|+||++ ||.+++.++.+..+.++ +.++++
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~----------------------------~~~~~~~~~~~~~i~l~--~~~~~~ 50 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKA----------------------------LFSGDFKESKKSEIYLD--DVSPED 50 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHH----------------------------HHcCCCccCCCCEEEec--CCCHHH
Confidence 567777 5799999999999999999 99998887777888887 899999
Q ss_pred HHHHHHHHhcCCccCCccchHHHHHHHHhHHHhhhhHHHHh
Q 010644 146 LMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCS 186 (505)
Q Consensus 146 f~~ll~fiYtg~~~~~~~~~~~~ll~aA~~~~v~~l~~~C~ 186 (505)
|+.+|+|+|+|++.++. .++.+++.+|++|++++|++.|+
T Consensus 51 f~~~l~~ly~~~~~~~~-~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 51 FRALLEFLYTGKLDLPE-ENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred HHHHHHeecCceeecCH-HHHHHHHHHHHHHCcHHHHhhhC
Confidence 99999999999999986 79999999999999999999985
No 13
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.30 E-value=1.6e-12 Score=140.53 Aligned_cols=137 Identities=15% Similarity=0.263 Sum_probs=116.2
Q ss_pred CCCccEEEEEE-EEEeeeeeeeccCccccccCCCccccccchhhhHHHHHHHHhhhhhcccCCcccCCccEEEEecCCCC
Q 010644 64 SMDLSTVLRVK-TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLRIHASE 142 (505)
Q Consensus 64 ~~~~dv~~~v~-~~~~hr~iLaa~S~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~~~~v~l~~~~~~ 142 (505)
.++|+|+++-+ .++|||++|.||++||.. ||..-+.|+.+ ++.....+.
T Consensus 710 ~~d~~i~~KDGkvl~aHkc~L~aRlEYF~s----------------------------mf~~~w~E~sS--~t~~~~p~~ 759 (1267)
T KOG0783|consen 710 TMDTVIKLKDGKVLKAHKCFLSARLEYFSS----------------------------MFQFVWMESSS--ITVNLSPLT 759 (1267)
T ss_pred ceeEEEEecCCcCcccceeEeeeHHHHHHH----------------------------HHHHHHhhhcc--ceeecCcch
Confidence 45666666654 599999999999999999 99988888766 444433677
Q ss_pred HHHHHHHHHHHh-cCCccC----CccchHHHHHHHHhHHHhhhhHHHHhhhcccCccCcccHHHHHhhcchhhhcccchh
Q 010644 143 EAALMELLNFMY-SSTLST----TTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQP 217 (505)
Q Consensus 143 ~~~f~~ll~fiY-tg~~~~----~~~~~~~~ll~aA~~~~v~~l~~~C~~~L~~~~l~~~Ncl~il~~A~~~~~a~~~~~ 217 (505)
.+.|..+|+|+| +.++.+ ...+-+.+++..||.|-+.+|+..|+..|.+ .++..||-.++++|.+| ++.+
T Consensus 760 ~e~m~ivLdylYs~d~~~~~k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~-kl~lk~~~~llefaamY----~ak~ 834 (1267)
T KOG0783|consen 760 VEHMSIVLDYLYSDDKVELFKDLKESDFMFEILSIADQLLILELKSICEQSLLR-KLNLKTLPTLLEFAAMY----HAKE 834 (1267)
T ss_pred HHHHHHHHHHHHccchHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-HhcccchHHHHHHHHHh----hHHH
Confidence 999999999999 555542 1125688999999999999999999999999 89999999999999998 9999
Q ss_pred HHHHHHHHHhhccccccc
Q 010644 218 LTDTAKQFLAARYKDISK 235 (505)
Q Consensus 218 L~~~~~~fI~~nf~~v~~ 235 (505)
|+..|++||+.|...+..
T Consensus 835 L~~~C~dfic~N~~~~Le 852 (1267)
T KOG0783|consen 835 LYSRCIDFICHNIEFFLE 852 (1267)
T ss_pred HHHHHHHHHHHhHHHHHH
Confidence 999999999999877764
No 14
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.46 E-value=4.3e-07 Score=100.29 Aligned_cols=108 Identities=19% Similarity=0.200 Sum_probs=76.7
Q ss_pred eeEEE------ecCCCeEEEEeCCCCeEEe---ccccccceEEEeeCCeEeeecceeecCC--c-cccceecccCCccee
Q 010644 354 ERAYK------YRPVKVVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQAFHLGGQG--F-FLSAHCNMDQQSSFH 421 (505)
Q Consensus 354 ~~ly~------~~~~~~Ve~Ydp~~~~W~~---l~~~R~~~~~~~~~g~IY~~~~viGG~~--~-~l~~~~~~~~~~~~~ 421 (505)
+.||+ ...+++||+|||.+++|.. |+.+|..||+++++|+|| ++||.. . .+...+.|||....
T Consensus 381 g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iY----i~GG~~~~~~~l~sve~YDP~t~~- 455 (571)
T KOG4441|consen 381 GKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLY----IIGGGDGSSNCLNSVECYDPETNT- 455 (571)
T ss_pred CEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEE----EEcCcCCCccccceEEEEcCCCCc-
Confidence 56787 2357899999999999999 888999999999999999 999952 2 45666778885443
Q ss_pred EeEEEEeeecCCC-ceeeeeeeeeeecCCchhhhccccceeEecC------CeeeeeecCCCCCceeEE
Q 010644 422 CFGLFLGMQEKGS-VSFAVDYEFAARIKPTEEYVSKYKGNYTFTG------GKAVGYRNLFGIPWTAFM 483 (505)
Q Consensus 422 ~~g~~~g~~~~~~-~~~~~~~~~~~r~~~~~~f~~~~~~~~~~tg------~~~~~~~~~~~~~~~~~~ 483 (505)
|...-.|....+ ..+. .-...+|.++| -.+|+++||.+-.|+.+-
T Consensus 456 -W~~~~~M~~~R~~~g~a----------------~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 456 -WTLIAPMNTRRSGFGVA----------------VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred -eeecCCcccccccceEE----------------EECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 344444422211 0111 11356677775 235899999999999874
No 15
>PHA02713 hypothetical protein; Provisional
Probab=98.23 E-value=7e-06 Score=90.69 Aligned_cols=48 Identities=13% Similarity=0.118 Sum_probs=42.0
Q ss_pred eeEEE-ec-----CCCeEEEEeCCCCeEEe---ccccccceEEEeeCCeEeeecceeecCC
Q 010644 354 ERAYK-YR-----PVKVVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQAFHLGGQG 405 (505)
Q Consensus 354 ~~ly~-~~-----~~~~Ve~Ydp~~~~W~~---l~~~R~~~~~~~~~g~IY~~~~viGG~~ 405 (505)
+.||+ ++ ..++||+|||.+++|.. ||.+|..+++++++|+|| ++||..
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IY----viGG~~ 408 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIY----IIGGRT 408 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEE----EEeCCC
Confidence 57888 22 35789999999999998 899999999999999999 999964
No 16
>PHA02790 Kelch-like protein; Provisional
Probab=98.18 E-value=6.1e-06 Score=89.58 Aligned_cols=106 Identities=16% Similarity=0.019 Sum_probs=68.7
Q ss_pred eeEEE-ec--CCCeEEEEeCCCCeEEe---ccccccceEEEeeCCeEeeecceeecCCccccceecccCCcceeEeEEEE
Q 010644 354 ERAYK-YR--PVKVVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFL 427 (505)
Q Consensus 354 ~~ly~-~~--~~~~Ve~Ydp~~~~W~~---l~~~R~~~~~~~~~g~IY~~~~viGG~~~~l~~~~~~~~~~~~~~~g~~~ 427 (505)
+.+|+ ++ ..++|++|||.+++|.. ||.+|..+++++++|+|| ++||..........+||....+...--+
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IY----viGG~~~~~~~ve~ydp~~~~W~~~~~m 394 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIY----VIGGHSETDTTTEYLLPNHDQWQFGPST 394 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEE----EecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence 57787 22 34789999999999998 888999999999999999 9999643333445577754444332111
Q ss_pred eeecCCCceeeeeeeeeeecCCchhhhccccceeEecCCeeeeeecCCCCCceeE
Q 010644 428 GMQEKGSVSFAVDYEFAARIKPTEEYVSKYKGNYTFTGGKAVGYRNLFGIPWTAF 482 (505)
Q Consensus 428 g~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~~~~~tg~~~~~~~~~~~~~~~~~ 482 (505)
...+.+. ++ ++.....|.++| +++++|+.+-.|+.+
T Consensus 395 ~~~r~~~---------~~--------~~~~~~IYv~GG--~~e~ydp~~~~W~~~ 430 (480)
T PHA02790 395 YYPHYKS---------CA--------LVFGRRLFLVGR--NAEFYCESSNTWTLI 430 (480)
T ss_pred CCccccc---------eE--------EEECCEEEEECC--ceEEecCCCCcEeEc
Confidence 1111111 11 112245666554 367788888888743
No 17
>PHA03098 kelch-like protein; Provisional
Probab=98.18 E-value=8.2e-06 Score=89.51 Aligned_cols=47 Identities=23% Similarity=0.160 Sum_probs=40.9
Q ss_pred eeEEE-e-----cCCCeEEEEeCCCCeEEe---ccccccceEEEeeCCeEeeecceeecC
Q 010644 354 ERAYK-Y-----RPVKVVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQAFHLGGQ 404 (505)
Q Consensus 354 ~~ly~-~-----~~~~~Ve~Ydp~~~~W~~---l~~~R~~~~~~~~~g~IY~~~~viGG~ 404 (505)
+.+|+ + ...+++++|||.+++|.. ||.+|..+++++.+|+|| ++||.
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iY----v~GG~ 398 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIY----VIGGI 398 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEE----EECCc
Confidence 46777 2 236789999999999999 889999999999999999 99995
No 18
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=97.92 E-value=1.5e-05 Score=87.62 Aligned_cols=94 Identities=22% Similarity=0.277 Sum_probs=67.3
Q ss_pred CCCccEEEEEE--EEEeeeeeeeccCccccccCCCccccccchhhhHHHHHHHHhhhhhcccCCcccC----------Cc
Q 010644 64 SMDLSTVLRVK--TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRES----------EQ 131 (505)
Q Consensus 64 ~~~~dv~~~v~--~~~~hr~iLaa~S~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es----------~~ 131 (505)
..+.||+|.|+ -|+|||-||++||++||+ +|....+.| .+
T Consensus 556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrk----------------------------L~l~~~~~s~~~dIY~~~~~~ 607 (1267)
T KOG0783|consen 556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRK----------------------------LLLQKKKSSVSNDIYIEEITQ 607 (1267)
T ss_pred cccceEEEEecCeecccceEEEEeccHHHHH----------------------------HHHhhccccccceeeeecccc
Confidence 34679999995 599999999999999999 554432222 23
Q ss_pred cEEEEecCCCCHHHHHHHHHHHhcCCccCC-------------ccch-------HHHHHHHHhHHHhhhhHHHH
Q 010644 132 RYVTLRIHASEEAALMELLNFMYSSTLSTT-------------TPTA-------LLDVLMAADKFEVASCMRYC 185 (505)
Q Consensus 132 ~~v~l~~~~~~~~~f~~ll~fiYtg~~~~~-------------~~~~-------~~~ll~aA~~~~v~~l~~~C 185 (505)
..-+|.++++.|..|+.+|+||||...--. -++| ...+...+.+|++.+|...-
T Consensus 608 ~~~~~~ve~i~p~mfe~lL~~iYtdt~~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~ 681 (1267)
T KOG0783|consen 608 SHSTIRVEDIPPLMFEILLHYIYTDTLLSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFS 681 (1267)
T ss_pred cCceeeeccCCHHHHHHHHHHHhcccccCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhh
Confidence 344455779999999999999999853210 0133 33478888888888776433
No 19
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.67 E-value=1.5e-05 Score=80.96 Aligned_cols=133 Identities=16% Similarity=0.104 Sum_probs=101.9
Q ss_pred EEEeeeeeeeccCccccccCCCccccccchhhhHHHHHHHHhhhhhcccCCcccCC--ccEEEEecCCCCHHHHHHHHHH
Q 010644 75 TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESE--QRYVTLRIHASEEAALMELLNF 152 (505)
Q Consensus 75 ~~~~hr~iLaa~S~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~--~~~v~l~~~~~~~~~f~~ll~f 152 (505)
+.|||++++ .|.+||+. ||.|++.|+. +....+..+..+..+.+.+++|
T Consensus 302 RyP~hla~i-~R~eyfk~----------------------------mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~ 352 (516)
T KOG0511|consen 302 RYPAHLARI-LRVEYFKS----------------------------MFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRN 352 (516)
T ss_pred cccHHHHHH-HHHHHHHH----------------------------HhccchhhhcCCccccccccchHHHHHHHHHHHH
Confidence 699999999 58889999 9999999954 3333333447888999999999
Q ss_pred HhcCCccCCccchHHHHHHHHhHHHhhh---hHHHHhhhcccC--ccCcccHHHHHhhcchhhhcccchhHHHHHHHHHh
Q 010644 153 MYSSTLSTTTPTALLDVLMAADKFEVAS---CMRYCSRLLRNL--PMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLA 227 (505)
Q Consensus 153 iYtg~~~~~~~~~~~~ll~aA~~~~v~~---l~~~C~~~L~~~--~l~~~Ncl~il~~A~~~~~a~~~~~L~~~~~~fI~ 227 (505)
+|+.+..+.. +-+.+++..|+++-++. |+.+....+.+- -++.-|++.++..+-.. ....|.+.+..|++
T Consensus 353 lY~d~tdi~~-~~A~dvll~ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~----~~~rlEqfa~~~~a 427 (516)
T KOG0511|consen 353 LYCDQTDIIF-DVASDVLLFADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDL----VACRLEQFAETHEA 427 (516)
T ss_pred hhcccccchH-HHHhhHHHHhhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHh----hhHHHHHHHHHHHH
Confidence 9999999984 89999999999997762 444444333330 24455677777766444 78889999999999
Q ss_pred hccccccccchhhcC
Q 010644 228 ARYKDISKFQEEVLN 242 (505)
Q Consensus 228 ~nf~~v~~~~~eFl~ 242 (505)
.|...+.. .+++..
T Consensus 428 ~hl~~l~~-dPe~~~ 441 (516)
T KOG0511|consen 428 RHLLLLLP-DPEGDS 441 (516)
T ss_pred HHHHHhcC-CchhhH
Confidence 99998888 777754
No 20
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.06 E-value=9.5e-05 Score=72.28 Aligned_cols=103 Identities=19% Similarity=0.292 Sum_probs=68.8
Q ss_pred EEEeeeeeeeccCccccccCCCccccccchhhhHHHHHHHHhhhhhcccCCccc-----CCccEEEEecCCCCHHHHH-H
Q 010644 75 TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRE-----SEQRYVTLRIHASEEAALM-E 148 (505)
Q Consensus 75 ~~~~hr~iLaa~S~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~e-----s~~~~v~l~~~~~~~~~f~-~ 148 (505)
++.||++|.||||++||. +|++ -.+.+-.- +....|.+. +-+=|.+|. .
T Consensus 262 eikahkai~aaRS~ffRn--------------LL~R----------kiregeE~sdrtlr~PkRIifd-E~I~PkafA~i 316 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRN--------------LLLR----------KIREGEEGSDRTLRRPKRIIFD-ELIFPKAFAPI 316 (401)
T ss_pred HHHHHHHHHHhhhHHHHH--------------HHHH----------HhhcccccccccccCCceeech-hhhcchhhhhh
Confidence 389999999999999999 1111 11111111 112345554 234455554 6
Q ss_pred HHHHHhcCCccCCc---------------------------cchHHHHHHHHhHHHhhhhHHHHhhhcccCccCcccHHH
Q 010644 149 LLNFMYSSTLSTTT---------------------------PTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALL 201 (505)
Q Consensus 149 ll~fiYtg~~~~~~---------------------------~~~~~~ll~aA~~~~v~~l~~~C~~~L~~~~l~~~Ncl~ 201 (505)
+|.+|||..+.++- .+..++++.+|-+|+++-|.++|...+.. ....++...
T Consensus 317 ~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~-acaadlsn~ 395 (401)
T KOG2838|consen 317 FLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRK-ACAADLSNG 395 (401)
T ss_pred hhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhcccc
Confidence 78999999887411 02357889999999999999999999988 677766655
Q ss_pred HH
Q 010644 202 YL 203 (505)
Q Consensus 202 il 203 (505)
++
T Consensus 396 cL 397 (401)
T KOG2838|consen 396 CL 397 (401)
T ss_pred cc
Confidence 44
No 21
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.04 E-value=0.00028 Score=71.57 Aligned_cols=126 Identities=16% Similarity=0.148 Sum_probs=101.0
Q ss_pred EEEEeeeeeeeccCccccccCCCccccccchhhhHHHHHHHHhhhhhcccCCcccCCccEEEEecCCCCHHHHHHHHHHH
Q 010644 74 KTVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLRIHASEEAALMELLNFM 153 (505)
Q Consensus 74 ~~~~~hr~iLaa~S~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~~~~v~l~~~~~~~~~f~~ll~fi 153 (505)
+.+.+|+++++|+|+.|++ |+.....+..++.+++. +.++..++++..|+
T Consensus 110 g~~~~~~~~~~a~~~V~~~----------------------------~~~~d~~~~~~~~~~~~--d~~~~~~~~~~~F~ 159 (297)
T KOG1987|consen 110 GFLVAHKLVLVARSEVFEA----------------------------MGKSDVFKESSKLITLL--EEKPEVLEALNGFQ 159 (297)
T ss_pred cEEEcCceEEEeeecceee----------------------------ecccccchhcccccccc--ccchhhHhhhceEE
Confidence 4689999999999999999 99887665556666666 89999999999999
Q ss_pred hcCCccCCccchHH---HHHHHHhHHHhhhhHHHHhhhcccCccCcccHHHHHhhcchhhhcccchhHHHHHHHHHhh--
Q 010644 154 YSSTLSTTTPTALL---DVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAA-- 228 (505)
Q Consensus 154 Ytg~~~~~~~~~~~---~ll~aA~~~~v~~l~~~C~~~L~~~~l~~~Ncl~il~~A~~~~~a~~~~~L~~~~~~fI~~-- 228 (505)
|+..-.... ..+. .++.+|..++...++..|...+.+ .+...+....+..++.+ ....+..++..++..
T Consensus 160 ~~~s~~~~~-~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~-~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~ 233 (297)
T KOG1987|consen 160 VLPSQVSSV-ERIFEKHPDLAAAFKYKNRHLKLACMPVLLS-LIETLNVSQSLQEASNY----DLKEAKSALTYVIAAGF 233 (297)
T ss_pred EeccchHHH-HHhhcCChhhhhccccccHHHHHHHHHHHHH-HHHhhhhcccHHHhchh----HHHHHHHHHHHHHhccc
Confidence 996544332 3443 888899999999999999999999 68888888888877765 677788888888876
Q ss_pred ccccccc
Q 010644 229 RYKDISK 235 (505)
Q Consensus 229 nf~~v~~ 235 (505)
++..+.+
T Consensus 234 ~ld~l~~ 240 (297)
T KOG1987|consen 234 KLDWLEK 240 (297)
T ss_pred hHhHHHH
Confidence 5445543
No 22
>PLN02153 epithiospecifier protein
Probab=96.96 E-value=0.0037 Score=64.68 Aligned_cols=48 Identities=15% Similarity=0.141 Sum_probs=40.4
Q ss_pred eeEEEe------cCCCeEEEEeCCCCeEEe---c-----cccccceEEEeeCCeEeeecceeecCC
Q 010644 354 ERAYKY------RPVKVVEFELPRQQCVVY---L-----DLKREECAHLFPAGRIYSQAFHLGGQG 405 (505)
Q Consensus 354 ~~ly~~------~~~~~Ve~Ydp~~~~W~~---l-----~~~R~~~~~~~~~g~IY~~~~viGG~~ 405 (505)
+.||+. +..+.+++|||.+++|.. | |.+|..|++++.+++|| ++||..
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iy----v~GG~~ 147 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVY----VFGGVS 147 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEE----EECCcc
Confidence 467772 235789999999999997 5 67899999999999999 999963
No 23
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=96.95 E-value=0.0028 Score=65.53 Aligned_cols=39 Identities=13% Similarity=0.030 Sum_probs=35.4
Q ss_pred CCeEEEEeCCCCeEEe---ccc-cccceEEEeeCCeEeeecceeecC
Q 010644 362 VKVVEFELPRQQCVVY---LDL-KREECAHLFPAGRIYSQAFHLGGQ 404 (505)
Q Consensus 362 ~~~Ve~Ydp~~~~W~~---l~~-~R~~~~~~~~~g~IY~~~~viGG~ 404 (505)
.+.|++|||.+++|.. ||. +|..+++++.+|+|| ++||.
T Consensus 167 ~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iy----v~GG~ 209 (346)
T TIGR03547 167 NKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLL----LINGE 209 (346)
T ss_pred cceEEEEECCCCceeECccCCCCcCCCceEEEECCEEE----EEeee
Confidence 3689999999999999 775 688999999999999 99996
No 24
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=96.90 E-value=0.0019 Score=53.92 Aligned_cols=86 Identities=16% Similarity=0.279 Sum_probs=61.8
Q ss_pred EEEEE--EEEEeeeeeeec-cCccccccCCCccccccchhhhHHHHHHHHhhhhhcccCC---cccCCccEEEEecCCCC
Q 010644 69 TVLRV--KTVHISSPILAA-KSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNG---MRESEQRYVTLRIHASE 142 (505)
Q Consensus 69 v~~~v--~~~~~hr~iLaa-~S~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~---~~es~~~~v~l~~~~~~ 142 (505)
|.+-| ..|.+-+..|.. ...+|.+ ||+.. .....+.++-+ +-+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~----------------------------~~~~~~~~~~~~~~~~~fi---DRd 49 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLAR----------------------------LFSGERSDDYDDDDGEYFI---DRD 49 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTS----------------------------HHHTGHGGGEETTTTEEEE---SS-
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhh----------------------------HHhhccccccCCccceEEe---ccC
Confidence 45666 368888888874 4568888 88864 33344566766 689
Q ss_pred HHHHHHHHHHHhc-CCccCCccchHHHHHHHHhHHHhhhh-HHHH
Q 010644 143 EAALMELLNFMYS-STLSTTTPTALLDVLMAADKFEVASC-MRYC 185 (505)
Q Consensus 143 ~~~f~~ll~fiYt-g~~~~~~~~~~~~ll~aA~~~~v~~l-~~~C 185 (505)
|..|+.+|+|+.+ |.+.......+..++.-|++|+++.+ ++.|
T Consensus 50 p~~F~~IL~ylr~~~~l~~~~~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 50 PELFEYILNYLRTGGKLPIPDEICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHHHHHHHTSSB---TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred hhhhhHHHHHHhhcCccCCCCchhHHHHHHHHHHcCCCccccCCC
Confidence 9999999999999 67776433678899999999999998 6776
No 25
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=96.87 E-value=0.0045 Score=63.53 Aligned_cols=48 Identities=15% Similarity=0.074 Sum_probs=39.9
Q ss_pred eeEEE-e-----cCCCeEEEEeCCCCeEEe---cc-ccccceEEEeeCCeEeeecceeecCC
Q 010644 354 ERAYK-Y-----RPVKVVEFELPRQQCVVY---LD-LKREECAHLFPAGRIYSQAFHLGGQG 405 (505)
Q Consensus 354 ~~ly~-~-----~~~~~Ve~Ydp~~~~W~~---l~-~~R~~~~~~~~~g~IY~~~~viGG~~ 405 (505)
+.||+ + ...+.+++|||.+++|.. || .+|..+++++++|+|| ++||..
T Consensus 124 ~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iY----v~GG~~ 181 (323)
T TIGR03548 124 GTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELY----VFGGGS 181 (323)
T ss_pred CEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEE----EEcCCC
Confidence 46777 2 246789999999999998 55 3788899999999999 999963
No 26
>smart00612 Kelch Kelch domain.
Probab=96.78 E-value=0.0018 Score=46.04 Aligned_cols=32 Identities=19% Similarity=0.084 Sum_probs=28.6
Q ss_pred CCCeEEEEeCCCCeEEe---ccccccceEEEeeCC
Q 010644 361 PVKVVEFELPRQQCVVY---LDLKREECAHLFPAG 392 (505)
Q Consensus 361 ~~~~Ve~Ydp~~~~W~~---l~~~R~~~~~~~~~g 392 (505)
..+.+++|||.+++|.. |+.+|..+++++++|
T Consensus 13 ~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 13 RLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred eeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 45789999999999998 899999999998875
No 27
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=96.74 E-value=0.0054 Score=64.48 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=35.1
Q ss_pred CCeEEEEeCCCCeEEe---ccc-cccceEEEeeCCeEeeecceeecC
Q 010644 362 VKVVEFELPRQQCVVY---LDL-KREECAHLFPAGRIYSQAFHLGGQ 404 (505)
Q Consensus 362 ~~~Ve~Ydp~~~~W~~---l~~-~R~~~~~~~~~g~IY~~~~viGG~ 404 (505)
.+.|++|||.+++|.. ||. +|..+++++.+++|| ++||.
T Consensus 188 ~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iY----v~GG~ 230 (376)
T PRK14131 188 NKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLW----LINGE 230 (376)
T ss_pred CceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEE----EEeee
Confidence 4689999999999998 775 788899999999999 99995
No 28
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=96.73 E-value=0.0058 Score=62.70 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=39.1
Q ss_pred eeEEE-e-----cCCCeEEEEeCCCCeE----Ee---ccccccceEEEeeCCeEeeecceeecC
Q 010644 354 ERAYK-Y-----RPVKVVEFELPRQQCV----VY---LDLKREECAHLFPAGRIYSQAFHLGGQ 404 (505)
Q Consensus 354 ~~ly~-~-----~~~~~Ve~Ydp~~~~W----~~---l~~~R~~~~~~~~~g~IY~~~~viGG~ 404 (505)
+.||+ + +.++.+++||+.+++| .. ||.+|..+++++.+|+|| ++||.
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iY----v~GG~ 132 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLY----VGGGN 132 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEE----EEeCc
Confidence 45666 2 2367899999999998 44 888999999999999999 99995
No 29
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=96.67 E-value=0.004 Score=60.59 Aligned_cols=91 Identities=16% Similarity=0.293 Sum_probs=75.0
Q ss_pred EEEEE--EEEeeeeeeeccCccccccCCCccccccchhhhHHHHHHHHhhhhhcccCCcc--cCCccEEEEecCCCCHHH
Q 010644 70 VLRVK--TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMR--ESEQRYVTLRIHASEEAA 145 (505)
Q Consensus 70 ~~~v~--~~~~hr~iLaa~S~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~--es~~~~v~l~~~~~~~~~ 145 (505)
.+-|+ .|..++.-|-....+|++ ||..++. -..+..|-| +=+|.-
T Consensus 8 kLnvGG~~F~Tsk~TLtk~dg~fk~----------------------------m~e~~i~~~~d~s~~IFI---DRSpKH 56 (230)
T KOG2716|consen 8 KLNVGGTIFKTSKSTLTKFDGFFKT----------------------------MLETDIPVEKDESGCIFI---DRSPKH 56 (230)
T ss_pred EEecCCeEEEeehhhhhhhhhHHHH----------------------------HhhcCCccccCCcCcEEe---cCChhH
Confidence 34453 699999999888999999 9998763 233456766 789999
Q ss_pred HHHHHHHHhcCCccCCc-cchHHHHHHHHhHHHhhhhHHHHhhhccc
Q 010644 146 LMELLNFMYSSTLSTTT-PTALLDVLMAADKFEVASCMRYCSRLLRN 191 (505)
Q Consensus 146 f~~ll~fiYtg~~~~~~-~~~~~~ll~aA~~~~v~~l~~~C~~~L~~ 191 (505)
|..+|+||-.|.+.+.. ...+.+|+.=|.+|.++.|.+.|..-+..
T Consensus 57 F~~ILNfmRdGdv~LPe~~kel~El~~EA~fYlL~~Lv~~C~~~i~~ 103 (230)
T KOG2716|consen 57 FDTILNFMRDGDVDLPESEKELKELLREAEFYLLDGLVELCQSAIAR 103 (230)
T ss_pred HHHHHHhhhcccccCccchHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 99999999999998643 14578999999999999999999998777
No 30
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=96.56 E-value=0.014 Score=60.44 Aligned_cols=48 Identities=15% Similarity=0.116 Sum_probs=38.8
Q ss_pred eeEEE-ec-CCCeEEEEeC--CCCeEEe---cc-ccccceEEEeeCCeEeeecceeecCC
Q 010644 354 ERAYK-YR-PVKVVEFELP--RQQCVVY---LD-LKREECAHLFPAGRIYSQAFHLGGQG 405 (505)
Q Consensus 354 ~~ly~-~~-~~~~Ve~Ydp--~~~~W~~---l~-~~R~~~~~~~~~g~IY~~~~viGG~~ 405 (505)
+.+|+ ++ ..+.+..||+ .+++|.. || .+|..+++++++|+|| ++||..
T Consensus 18 ~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iY----v~GG~~ 73 (346)
T TIGR03547 18 DKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLY----VFGGIG 73 (346)
T ss_pred CEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEE----EEeCCC
Confidence 56777 22 3367889985 6789998 77 5899999999999999 999974
No 31
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=96.55 E-value=0.0013 Score=64.60 Aligned_cols=84 Identities=14% Similarity=0.214 Sum_probs=54.8
Q ss_pred CccEEEEEEEEEeeeeeeeccCccccccCCCccccccchhhhHHHHHHHHhhhhhcccCCcccCCccEEEEecCCCCHHH
Q 010644 66 DLSTVLRVKTVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLRIHASEEAA 145 (505)
Q Consensus 66 ~~dv~~~v~~~~~hr~iLaa~S~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~~~~v~l~~~~~~~~~ 145 (505)
+-|++|.-..|+|||++||+|||+|+. +.+............+...+++.++
T Consensus 132 dldiiFkeTcfpahRA~laaRCpffK~----------------------------l~nsd~e~~ae~i~dik~ag~dm~~ 183 (401)
T KOG2838|consen 132 DLDIIFKETCFPAHRAFLAARCPFFKI----------------------------LANSDEEPEAEDICDIKFAGFDMDA 183 (401)
T ss_pred cceeeeeeccchHHHHHHHhhCcchhh----------------------------hccCCCCcchhhhhhhhhhccChHH
Confidence 334455445699999999999999998 6655332222222223333899999
Q ss_pred HHHHHHHHhcCCccCCc--cchHHHHHHHHhHHH
Q 010644 146 LMELLNFMYSSTLSTTT--PTALLDVLMAADKFE 177 (505)
Q Consensus 146 f~~ll~fiYtg~~~~~~--~~~~~~ll~aA~~~~ 177 (505)
|.++|.|+|||+.-... -.|+.-+-++..-||
T Consensus 184 feafLh~l~tgEfgmEd~~fqn~diL~QL~edFG 217 (401)
T KOG2838|consen 184 FEAFLHSLITGEFGMEDLGFQNSDILEQLCEDFG 217 (401)
T ss_pred HHHHHHHHHhcccchhhcCCchHHHHHHHHHhhC
Confidence 99999999999986432 123444444454444
No 32
>PLN02153 epithiospecifier protein
Probab=96.33 E-value=0.013 Score=60.58 Aligned_cols=39 Identities=21% Similarity=0.109 Sum_probs=34.1
Q ss_pred CCeEEEEeCCCCeEEec------cccccceEEEeeCCeEeeecceeecC
Q 010644 362 VKVVEFELPRQQCVVYL------DLKREECAHLFPAGRIYSQAFHLGGQ 404 (505)
Q Consensus 362 ~~~Ve~Ydp~~~~W~~l------~~~R~~~~~~~~~g~IY~~~~viGG~ 404 (505)
++.+++|||.+++|..+ +.+|..|++++++|+|| ++||.
T Consensus 158 ~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iy----v~GG~ 202 (341)
T PLN02153 158 FRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIW----VVYGF 202 (341)
T ss_pred cceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEE----EEecc
Confidence 35799999999999983 26788999999999999 99985
No 33
>PLN02193 nitrile-specifier protein
Probab=96.17 E-value=0.028 Score=60.95 Aligned_cols=48 Identities=13% Similarity=0.057 Sum_probs=40.7
Q ss_pred eeEEEe------cCCCeEEEEeCCCCeEEe---c---cccccceEEEeeCCeEeeecceeecCC
Q 010644 354 ERAYKY------RPVKVVEFELPRQQCVVY---L---DLKREECAHLFPAGRIYSQAFHLGGQG 405 (505)
Q Consensus 354 ~~ly~~------~~~~~Ve~Ydp~~~~W~~---l---~~~R~~~~~~~~~g~IY~~~~viGG~~ 405 (505)
+.||+. ...+.+++|||.+++|.. | |.+|..|++++.+++|| ++||..
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iY----v~GG~~ 288 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVY----VFGGVS 288 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEE----EECCCC
Confidence 467772 246789999999999998 4 67899999999999999 999963
No 34
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=95.92 E-value=0.0037 Score=63.33 Aligned_cols=88 Identities=11% Similarity=0.299 Sum_probs=66.6
Q ss_pred EEEEeeeeeeeccCccccccCCCccccccchhhhHHHHHHHHhhhhhcccCCccc-CCccEEEEecCCCCHHHHHHHHHH
Q 010644 74 KTVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRE-SEQRYVTLRIHASEEAALMELLNF 152 (505)
Q Consensus 74 ~~~~~hr~iLaa~S~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~e-s~~~~v~l~~~~~~~~~f~~ll~f 152 (505)
+.|.|.+..|-..=+||+. .+.....+ ....+|.|.+ .-+-.+|+-+++|
T Consensus 14 rdF~C~~~lL~~~M~YF~~----------------------------~l~~~~~~~~~~~~idisV-hCDv~iF~WLm~y 64 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAE----------------------------YLSRYINDSQRWEEIDISV-HCDVHIFEWLMRY 64 (317)
T ss_pred eeeeccHHHHHHhhHHHHH----------------------------HHhhcccccCcCCCcceEE-ecChhHHHHHHHH
Confidence 3699999999988899999 66431111 1234566653 4678999999999
Q ss_pred HhcCCccCCccchHHHHHHHHhHHHhhhhHHHHhhhccc
Q 010644 153 MYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRN 191 (505)
Q Consensus 153 iYtg~~~~~~~~~~~~ll~aA~~~~v~~l~~~C~~~L~~ 191 (505)
+......++ |.|+..||.-|++++|++|++.|-.|+.+
T Consensus 65 v~~~~p~l~-~~NvvsIliSS~FL~M~~Lve~cl~y~~~ 102 (317)
T PF11822_consen 65 VKGEPPSLT-PSNVVSILISSEFLQMESLVEECLQYCHD 102 (317)
T ss_pred hhcCCCcCC-cCcEEEeEehhhhhccHHHHHHHHHHHHH
Confidence 999888887 48888888888888888888777777655
No 35
>PLN02193 nitrile-specifier protein
Probab=95.74 E-value=0.061 Score=58.38 Aligned_cols=48 Identities=13% Similarity=0.061 Sum_probs=39.4
Q ss_pred eeEEEe------cCCCeEEEEeCCCCeEEe------ccccccceEEEeeCCeEeeecceeecCC
Q 010644 354 ERAYKY------RPVKVVEFELPRQQCVVY------LDLKREECAHLFPAGRIYSQAFHLGGQG 405 (505)
Q Consensus 354 ~~ly~~------~~~~~Ve~Ydp~~~~W~~------l~~~R~~~~~~~~~g~IY~~~~viGG~~ 405 (505)
+.||+. ..++.++.|||.+++|.. ++.+|..+++++++|+|| ++||..
T Consensus 279 ~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiy----viGG~~ 338 (470)
T PLN02193 279 ENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVW----VVYGFN 338 (470)
T ss_pred CEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEE----EEECCC
Confidence 467772 235789999999999998 346788999999999999 999963
No 36
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=95.22 E-value=0.021 Score=56.36 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=42.6
Q ss_pred ceeeEEE-------ecCCCeEEEEeCCCCeEEe------ccccccceEEEeeCCeEeeecceeecC
Q 010644 352 FVERAYK-------YRPVKVVEFELPRQQCVVY------LDLKREECAHLFPAGRIYSQAFHLGGQ 404 (505)
Q Consensus 352 ~~~~ly~-------~~~~~~Ve~Ydp~~~~W~~------l~~~R~~~~~~~~~g~IY~~~~viGG~ 404 (505)
+.+++|+ .+..+...+|||.++.|.. +|..|.+|++++.++..| ++||+
T Consensus 87 y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~My----iFGGy 148 (392)
T KOG4693|consen 87 YQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMY----IFGGY 148 (392)
T ss_pred EcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEE----EecCh
Confidence 3356777 3457889999999999987 899999999999999999 99996
No 37
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=95.11 E-value=0.017 Score=60.79 Aligned_cols=38 Identities=11% Similarity=-0.105 Sum_probs=35.3
Q ss_pred eEEEEeCCCCeEEe---ccccccceEEEeeCCeEeeecceeecCC
Q 010644 364 VVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQAFHLGGQG 405 (505)
Q Consensus 364 ~Ve~Ydp~~~~W~~---l~~~R~~~~~~~~~g~IY~~~~viGG~~ 405 (505)
++|.|||.+++|.. ||.+|.++++++++|+|| ++||..
T Consensus 313 ~~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iy----v~GG~~ 353 (376)
T PRK14131 313 SDEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVL----LIGGET 353 (376)
T ss_pred ehheEEecCCcccccCcCCCCccceEEEEeCCEEE----EEcCCC
Confidence 58999999999987 999999999999999999 999974
No 38
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=94.94 E-value=0.13 Score=45.93 Aligned_cols=111 Identities=12% Similarity=0.155 Sum_probs=65.8
Q ss_pred CCeEeeecceeecCCccccceecc-cC-CcceeEeEEEEeeecC-C--CceeeeeeeeeeecCCc-hhhhccccceeEec
Q 010644 391 AGRIYSQAFHLGGQGFFLSAHCNM-DQ-QSSFHCFGLFLGMQEK-G--SVSFAVDYEFAARIKPT-EEYVSKYKGNYTFT 464 (505)
Q Consensus 391 ~g~IY~~~~viGG~~~~l~~~~~~-~~-~~~~~~~g~~~g~~~~-~--~~~~~~~~~~~~r~~~~-~~f~~~~~~~~~~t 464 (505)
+..++|..|.+||..|.+...-+= .. ....-..++++..... . .-++.+.+.+-.-+... +...++.. .+.|.
T Consensus 16 ~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~~~~w~i~a~~~~~l~~~~~~~~~~~~~~-~~~f~ 94 (137)
T cd03772 16 SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESDSTSWSCHAQAVLRIINYKDDEPSFSRRI-SHLFF 94 (137)
T ss_pred CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcCCCCCCeEEEEEEEEEEcCCCCcccEEEee-eeEEc
Confidence 578999999999999987422111 00 0111345666655221 1 12366666655544321 22222222 24554
Q ss_pred -CCeeeeeecCCCCCceeEEecCcceeecceeEEEEeeeee
Q 010644 465 -GGKAVGYRNLFGIPWTAFMADDSIYFINGNLHLRAELTIR 504 (505)
Q Consensus 465 -g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~ 504 (505)
.+..+|+.+. ++|..+.+.++.|-+|+.+++++++||.
T Consensus 95 ~~~~~~G~~~f--i~~~~L~~~~sgyl~~D~l~Ie~~V~~~ 133 (137)
T cd03772 95 SKENDWGFSNF--MTWSEVTDPEKGFIEDDTITLEVYVQAD 133 (137)
T ss_pred CCCCCccchhe--eEHHHhcCCCCCcEECCEEEEEEEEEee
Confidence 2223455544 7788888778899999999999999985
No 39
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=94.67 E-value=0.06 Score=51.75 Aligned_cols=64 Identities=20% Similarity=0.290 Sum_probs=52.1
Q ss_pred cccCC--c-ccCCccEEEEecCCCCHHHHHHHHHHHhcCCccCCccchHHHHHHHHhHHHhhhhHHHHhh
Q 010644 121 LFSNG--M-RESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSR 187 (505)
Q Consensus 121 ~f~~~--~-~es~~~~v~l~~~~~~~~~f~~ll~fiYtg~~~~~~~~~~~~ll~aA~~~~v~~l~~~C~~ 187 (505)
||.+. | +|+.+..+-| +-+|.-|+.+|+|+..|++...+.-+++++|+.|++||+-+|++.-++
T Consensus 39 MF~~~g~~~~~d~kGa~lI---DRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 39 MFSGRGAMCQEDKKGAVLI---DRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEEARFFQILSLKDHLED 105 (302)
T ss_pred HHccCCCccccccCceEEE---ccCchhhHHHHHHHhcCceeecCCccHHHHHHHhhHHhhHhHHhHHhh
Confidence 88773 2 3344455555 789999999999999999986655789999999999999999977766
No 40
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=94.61 E-value=0.075 Score=44.44 Aligned_cols=82 Identities=24% Similarity=0.282 Sum_probs=59.8
Q ss_pred CCCccEEEEE----EEEEeeeeeeeccCccccccCCCccccccchhhhHHHHHHHHhhhhhcccCCc--ccCCccEEEEe
Q 010644 64 SMDLSTVLRV----KTVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGM--RESEQRYVTLR 137 (505)
Q Consensus 64 ~~~~dv~~~v----~~~~~hr~iLaa~S~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~es~~~~v~l~ 137 (505)
|+..+.+-.| .+|-..| -+|.-|+-.|+ ||++.. .|...++|+++
T Consensus 13 gp~~~yVkLvS~Ddhefiikr-e~AmtSgTira----------------------------ml~gpg~~se~~~n~v~f~ 63 (112)
T KOG3473|consen 13 GPDSMYVKLVSSDDHEFIIKR-EHAMTSGTIRA----------------------------MLSGPGVFSEAEKNEVYFR 63 (112)
T ss_pred CcchhheEeecCCCcEEEEee-hhhhhhhHHHH----------------------------HHcCCccccccccceEEec
Confidence 4444544444 2454444 34578999999 999754 45556889999
Q ss_pred cCCCCHHHHHHHHHHH-----hcCC------ccCCccchHHHHHHHHhHHH
Q 010644 138 IHASEEAALMELLNFM-----YSST------LSTTTPTALLDVLMAADKFE 177 (505)
Q Consensus 138 ~~~~~~~~f~~ll~fi-----Ytg~------~~~~~~~~~~~ll~aA~~~~ 177 (505)
++....++.+-+|+ |++. ..|. |+-+++||.||+++.
T Consensus 64 --di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ip-pemaleLL~aAn~Le 111 (112)
T KOG3473|consen 64 --DIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIP-PEMALELLMAANYLE 111 (112)
T ss_pred --cchHHHHHHHHHHhhheeeeccccccCCCCCCC-HHHHHHHHHHhhhhc
Confidence 99999999999998 5665 2245 588999999999985
No 41
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=94.40 E-value=0.14 Score=45.75 Aligned_cols=109 Identities=19% Similarity=0.308 Sum_probs=60.8
Q ss_pred CCeEeeecceeecC---CccccceecccCCc----ceeEeEEEEeeecCCCceeeeeeeeeeecCCchhhhc-cccceeE
Q 010644 391 AGRIYSQAFHLGGQ---GFFLSAHCNMDQQS----SFHCFGLFLGMQEKGSVSFAVDYEFAARIKPTEEYVS-KYKGNYT 462 (505)
Q Consensus 391 ~g~IY~~~~viGG~---~~~l~~~~~~~~~~----~~~~~g~~~g~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~~~~ 462 (505)
+..++|..|.+||+ .|.+.. -|.. ....-.+++.+......++.+.+.|.+-+........ .....+.
T Consensus 22 ~~~i~S~~F~vgg~~~~~W~l~~----yP~G~~~~~~~~iSlyL~l~~~~~~~v~a~f~~~l~n~~~~~~~~~~~~~~~~ 97 (139)
T cd03774 22 GEVIKSSTFSSGANDKLKWCLRV----NPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYR 97 (139)
T ss_pred CCEEECCCeecCCcCCceEEEEE----eCCCCCCCCCCeEEEEEEEccCCCCcEEEEEEEEEEecCCCeeeeecccCcEe
Confidence 55889999999995 787732 2221 1123455665432222356777777776653222111 1112344
Q ss_pred ecCCeeeeeecCCCCCceeEEecCcceeecceeEEEEeeeeeC
Q 010644 463 FTGGKAVGYRNLFGIPWTAFMADDSIYFINGNLHLRAELTIRQ 505 (505)
Q Consensus 463 ~tg~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~ 505 (505)
|.++..+||... ++.+.+....+.|.+|+.|++++++||..
T Consensus 98 f~~~~~wG~~~f--i~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 98 FVQGKDWGFKKF--IRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred CCCCCccCHHHe--eeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 544333454332 33333333446688999999999999963
No 42
>PF13964 Kelch_6: Kelch motif
Probab=94.31 E-value=0.061 Score=39.21 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=24.7
Q ss_pred cccceEEEeeCCeEeeecceeecCCc---cccceecccCC
Q 010644 381 KREECAHLFPAGRIYSQAFHLGGQGF---FLSAHCNMDQQ 417 (505)
Q Consensus 381 ~R~~~~~~~~~g~IY~~~~viGG~~~---~l~~~~~~~~~ 417 (505)
+|.+|++++.+|+|| ++||..- .+...+.+|+.
T Consensus 1 pR~~~s~v~~~~~iy----v~GG~~~~~~~~~~v~~yd~~ 36 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIY----VFGGYDNSGKYSNDVERYDPE 36 (50)
T ss_pred CCccCEEEEECCEEE----EECCCCCCCCccccEEEEcCC
Confidence 689999999999999 9999743 23344455554
No 43
>PF13964 Kelch_6: Kelch motif
Probab=94.24 E-value=0.064 Score=39.12 Aligned_cols=29 Identities=17% Similarity=0.045 Sum_probs=23.4
Q ss_pred eeEEE-------ecCCCeEEEEeCCCCeEEe---ccccc
Q 010644 354 ERAYK-------YRPVKVVEFELPRQQCVVY---LDLKR 382 (505)
Q Consensus 354 ~~ly~-------~~~~~~Ve~Ydp~~~~W~~---l~~~R 382 (505)
+.||+ ....+.+++|||.+++|.. ||.+|
T Consensus 12 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 12 GKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 57787 2346889999999999999 77766
No 44
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=94.09 E-value=0.086 Score=37.65 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.2
Q ss_pred cccceEEEeeCCeEeeecceeecCCc
Q 010644 381 KREECAHLFPAGRIYSQAFHLGGQGF 406 (505)
Q Consensus 381 ~R~~~~~~~~~g~IY~~~~viGG~~~ 406 (505)
||..|++++.+++|| ++||..-
T Consensus 1 pR~~~~~~~~~~~iy----v~GG~~~ 22 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIY----VIGGYDG 22 (47)
T ss_dssp -BBSEEEEEETTEEE----EEEEBES
T ss_pred CCccCEEEEECCEEE----EEeeecc
Confidence 689999999999999 9999743
No 45
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=93.43 E-value=0.25 Score=42.11 Aligned_cols=108 Identities=19% Similarity=0.334 Sum_probs=66.2
Q ss_pred eCCeEeeecceeecCCccccceecccCCcceeEeEEEEeeecCC----CceeeeeeeeeeecCCchhhhccccceeEe-c
Q 010644 390 PAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKG----SVSFAVDYEFAARIKPTEEYVSKYKGNYTF-T 464 (505)
Q Consensus 390 ~~g~IY~~~~viGG~~~~l~~~~~~~~~~~~~~~g~~~g~~~~~----~~~~~~~~~~~~r~~~~~~f~~~~~~~~~~-t 464 (505)
.++.++|..|..||..|.+....+-... .....++++...+.. ..++.+++.+.+.+...+.-..+....... .
T Consensus 14 ~~~~~~S~~f~~~g~~W~l~~~p~~~~~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 92 (126)
T cd00121 14 EGESIYSPPFEVGGYKWRIRIYPNGDGE-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGKSLSKSFTHVFFSE 92 (126)
T ss_pred CCcEEECCCEEEcCEeEEEEEEcCCCCC-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCccceEeccCCcCCC
Confidence 4788999999999999988654433321 234677777653322 235777788888776433333333333322 2
Q ss_pred CCeeeeeecCCCCCceeEEecCcceeecceeEEEEeee
Q 010644 465 GGKAVGYRNLFGIPWTAFMADDSIYFINGNLHLRAELT 502 (505)
Q Consensus 465 g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 502 (505)
.+.+.|+.+. ++|..+..... .+||.|.++++++
T Consensus 93 ~~~~~G~~~f--i~~~~l~~~~~--~~~d~l~i~~~v~ 126 (126)
T cd00121 93 KGSGWGFPKF--ISWDDLEDSYY--LVDDSLTIEVEVK 126 (126)
T ss_pred CCCCCChHHe--eEHHHhccCCc--EECCEEEEEEEEC
Confidence 3334555533 66766665332 7999999999863
No 46
>PF13854 Kelch_5: Kelch motif
Probab=93.42 E-value=0.078 Score=37.45 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=22.3
Q ss_pred ccccccceEEEeeCCeEeeecceeecCC
Q 010644 378 LDLKREECAHLFPAGRIYSQAFHLGGQG 405 (505)
Q Consensus 378 l~~~R~~~~~~~~~g~IY~~~~viGG~~ 405 (505)
+|.+|..|++++.+++|| +.||..
T Consensus 1 ~P~~R~~hs~~~~~~~iy----i~GG~~ 24 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIY----IFGGYS 24 (42)
T ss_pred CCCCccceEEEEECCEEE----EEcCcc
Confidence 588999999999999999 999986
No 47
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=92.57 E-value=0.1 Score=44.56 Aligned_cols=72 Identities=10% Similarity=0.207 Sum_probs=50.3
Q ss_pred EEEeeeeeeeccCccccccCCCccccccchhhhHHHHHHHHhhhhhcccCCcccCC-ccEEEEecCCCCHHHHHHHHHHH
Q 010644 75 TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESE-QRYVTLRIHASEEAALMELLNFM 153 (505)
Q Consensus 75 ~~~~hr~iLaa~S~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~-~~~v~l~~~~~~~~~f~~ll~fi 153 (505)
+|.+.+.+. ..|..++. |+.+...+.. ...|.++ +++..+|+.+++|+
T Consensus 13 ~f~v~~~~a-~~S~~i~~----------------------------~l~~~~~~~~~~~~Ipl~--~v~~~~L~~Vi~yc 61 (104)
T smart00512 13 VFEVEREVA-RQSKTIKA----------------------------MIEDLGVDDENNNPIPLP--NVTSKILSKVIEYC 61 (104)
T ss_pred EEEecHHHH-HHHHHHHH----------------------------HHHccCcccCCCCCccCC--CcCHHHHHHHHHHH
Confidence 677777755 57888888 8876332222 2356665 99999999999999
Q ss_pred hcCCcc-------------------CCccchHHHHHHHHhHHHh
Q 010644 154 YSSTLS-------------------TTTPTALLDVLMAADKFEV 178 (505)
Q Consensus 154 Ytg~~~-------------------~~~~~~~~~ll~aA~~~~v 178 (505)
+.-.-. ++. +.+.+|+.||++|++
T Consensus 62 ~~h~~~~~~~~~~~~~~~wD~~F~~~d~-~~l~dLl~AAnyL~I 104 (104)
T smart00512 62 EHHVDDPPSVADKDDIPTWDAEFLKIDQ-ETLFELILAANYLDI 104 (104)
T ss_pred HHcccCCCCccccccccHHHHHHHcCCH-HHHHHHHHHHHhhCC
Confidence 643211 332 578999999999875
No 48
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=92.14 E-value=0.2 Score=42.77 Aligned_cols=98 Identities=16% Similarity=0.308 Sum_probs=60.9
Q ss_pred ecceeecCCccccceecccCCcceeEeEEEEeeecC-----CCceeeeeeeeeeecCCchhhhccccceeEecCCeeeee
Q 010644 397 QAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEK-----GSVSFAVDYEFAARIKPTEEYVSKYKGNYTFTGGKAVGY 471 (505)
Q Consensus 397 ~~~viGG~~~~l~~~~~~~~~~~~~~~g~~~g~~~~-----~~~~~~~~~~~~~r~~~~~~f~~~~~~~~~~tg~~~~~~ 471 (505)
..+..||..|.+...-+-+ --..++++-+... +.-++.+++.+-+-+..... .......+.|++..++|+
T Consensus 17 ~~~~~~g~~W~l~~~~~~~----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~F~~~~~~g~ 91 (119)
T PF00917_consen 17 FVFSHGGYPWRLKVYPKGN----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKS-ISKRIKSHSFNNPSSWGW 91 (119)
T ss_dssp EESSTTSEEEEEEEETTES----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCE-EEEEEECEEECTTSEEEE
T ss_pred CeEEECCEEEEEEEEeCCC----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCc-ceeeeeeeEEeeecccch
Confidence 4678899999885322222 1245566644322 23446666666666533333 444444788888777777
Q ss_pred ecCCCCCceeEEecCcceeecceeEEEEeeee
Q 010644 472 RNLFGIPWTAFMADDSIYFINGNLHLRAELTI 503 (505)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 503 (505)
.+. +.|..+.... |.+||.+++.++.+|
T Consensus 92 ~~f--i~~~~l~~~~--fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 92 SSF--ISWEDLEDPY--FLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEE--EEHHHHTTCT--TSBTTEEEEEEEEEE
T ss_pred hhe--eEHHHhCccC--CeECCEEEEEEEEEC
Confidence 653 6666666555 899999999999987
No 49
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=91.71 E-value=0.22 Score=36.13 Aligned_cols=30 Identities=10% Similarity=-0.191 Sum_probs=26.5
Q ss_pred CCCeEEEEeCCCCeEEe---ccccccceEEEee
Q 010644 361 PVKVVEFELPRQQCVVY---LDLKREECAHLFP 390 (505)
Q Consensus 361 ~~~~Ve~Ydp~~~~W~~---l~~~R~~~~~~~~ 390 (505)
.++.+..||+.+++|.. +|.+|..|+++++
T Consensus 17 ~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 17 RLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred EecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 35789999999999999 8999999999864
No 50
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=91.23 E-value=0.19 Score=36.56 Aligned_cols=20 Identities=30% Similarity=0.526 Sum_probs=19.0
Q ss_pred cccceEEEeeCCeEeeecceeecC
Q 010644 381 KREECAHLFPAGRIYSQAFHLGGQ 404 (505)
Q Consensus 381 ~R~~~~~~~~~g~IY~~~~viGG~ 404 (505)
||..|++++++++|| ++||.
T Consensus 1 ~r~~hs~~~~~~kiy----v~GG~ 20 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIY----VFGGY 20 (49)
T ss_pred CccceEEEEECCEEE----EECCc
Confidence 688999999999999 99998
No 51
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=90.94 E-value=1 Score=39.99 Aligned_cols=106 Identities=15% Similarity=0.227 Sum_probs=57.4
Q ss_pred CCeEeeecceeecCCccccceecccCCcceeEeEEEEeeecCCC-------c-eeeeeeeeeeecCCchh-hhcccccee
Q 010644 391 AGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGS-------V-SFAVDYEFAARIKPTEE-YVSKYKGNY 461 (505)
Q Consensus 391 ~g~IY~~~~viGG~~~~l~~~~~~~~~~~~~~~g~~~g~~~~~~-------~-~~~~~~~~~~r~~~~~~-f~~~~~~~~ 461 (505)
++.++|..|.+||+.|.+..--+=+.. .-...+++.+....+ . ++.+.+.+.+-+..... -.. ....+
T Consensus 14 ~~~~~S~~F~vGG~~W~l~~yP~G~~~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~~~~~~~~-~~~~~ 90 (134)
T cd03775 14 EKKVHSPKFKCGGFEWRILLFPQGNSQ--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPGDPSIQLS-NVAHH 90 (134)
T ss_pred CcceeCCCEEECCeeEEEEEeCCCCCC--CCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCCCCccceE-cccee
Confidence 678999999999999988532221111 123556665422111 1 25666766665532111 111 13356
Q ss_pred EecC-CeeeeeecCCCCCceeEE----ecCcceeecceeEEEEee
Q 010644 462 TFTG-GKAVGYRNLFGIPWTAFM----ADDSIYFINGNLHLRAEL 501 (505)
Q Consensus 462 ~~tg-~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~l~~~~ 501 (505)
.|.. +.++|+... ++.+.+- ..++.|-+|+.|++.+++
T Consensus 91 ~F~~~~~~wG~~~f--i~~~~L~~~~~~~~~g~l~nD~l~I~~~~ 133 (134)
T cd03775 91 RFNAEDKDWGFTRF--IELRKLAHRTPDKPSPFLENGELNITVYV 133 (134)
T ss_pred EeCCCCCCCChhHc--ccHHHHcccccCCCCceeECCEEEEEEEE
Confidence 6662 334455443 3333332 225678899988888765
No 52
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=90.47 E-value=0.3 Score=53.28 Aligned_cols=41 Identities=10% Similarity=-0.008 Sum_probs=37.5
Q ss_pred CCeEEEEeCCCCeEEe------ccccccceEEEeeCCeEeeecceeecCCc
Q 010644 362 VKVVEFELPRQQCVVY------LDLKREECAHLFPAGRIYSQAFHLGGQGF 406 (505)
Q Consensus 362 ~~~Ve~Ydp~~~~W~~------l~~~R~~~~~~~~~g~IY~~~~viGG~~~ 406 (505)
...+.+||+.+++|.. .|.+|..|++++.+.++| +.||.+.
T Consensus 138 ~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~----vfGG~~~ 184 (482)
T KOG0379|consen 138 LNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLV----VFGGIGG 184 (482)
T ss_pred hhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEE----EECCccC
Confidence 4589999999999999 689999999999999999 9999753
No 53
>PLN02772 guanylate kinase
Probab=90.44 E-value=0.46 Score=50.16 Aligned_cols=56 Identities=13% Similarity=0.016 Sum_probs=45.2
Q ss_pred eeEEEe------c-CCCeEEEEeCCCCeEEe------ccccccceEEEee-CCeEeeecceeecC------Cccccceec
Q 010644 354 ERAYKY------R-PVKVVEFELPRQQCVVY------LDLKREECAHLFP-AGRIYSQAFHLGGQ------GFFLSAHCN 413 (505)
Q Consensus 354 ~~ly~~------~-~~~~Ve~Ydp~~~~W~~------l~~~R~~~~~~~~-~g~IY~~~~viGG~------~~~l~~~~~ 413 (505)
+++|+. + ..+.|.+||+.+++|.. -|.+|.+|+++++ +++|+ |++|. -|||...+.
T Consensus 35 dk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~ril----v~~~~~~~~~~~w~l~~~t~ 110 (398)
T PLN02772 35 DKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRIL----VIKKGSAPDDSIWFLEVDTP 110 (398)
T ss_pred CEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEE----EEeCCCCCccceEEEEcCCH
Confidence 577872 2 45689999999999998 7899999999988 79999 99873 678865554
No 54
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=89.68 E-value=0.92 Score=39.93 Aligned_cols=105 Identities=17% Similarity=0.274 Sum_probs=54.7
Q ss_pred CCeEeeecceeecCCccccceecccCCcceeEeEEEEeeecCCCceeeeeeeeeeecC--CchhhhccccceeEecCCee
Q 010644 391 AGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIK--PTEEYVSKYKGNYTFTGGKA 468 (505)
Q Consensus 391 ~g~IY~~~~viGG~~~~l~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~r~~--~~~~f~~~~~~~~~~tg~~~ 468 (505)
+..++|..|.+||+.|.+....+=+.......-++++.+.......+..++.+-.-+. ++ .... ....+.|+++.+
T Consensus 21 ~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~~~~~~~~~~~l~llnq~~~~-~~~~-~~~~~~f~~~~~ 98 (132)
T cd03773 21 ADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSGLGEASKYEYRVEMVHQANPT-KNIK-REFASDFEVGEC 98 (132)
T ss_pred CcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecCCCCceeEEEEEEEEcCCCCc-cceE-EeccccccCCCC
Confidence 4689999999999999885433211111122356666543322233455544443332 22 2222 222344554444
Q ss_pred eeeecCCCCCceeEEecCcceeec--ceeEEEEee
Q 010644 469 VGYRNLFGIPWTAFMADDSIYFIN--GNLHLRAEL 501 (505)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~i~--~~~~l~~~~ 501 (505)
+|+.+. ++.+.+. ++.|-.| +.|++|.++
T Consensus 99 wG~~~F--i~~~~L~--~~gfl~~~~D~l~i~~~v 129 (132)
T cd03773 99 WGYNRF--FRLDLLI--NEGYLLPENDTLILRFSV 129 (132)
T ss_pred cCHHHh--ccHHHHh--hCCCcCCCCCEEEEEEEE
Confidence 565443 3333332 3457777 888888765
No 55
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=89.47 E-value=0.26 Score=45.63 Aligned_cols=56 Identities=13% Similarity=0.266 Sum_probs=45.7
Q ss_pred EEEEecCCCCHHHHHHHHHHHhcCCcc-------------------------CCccchHHHHHHHHhHHHhhhhHHHHhh
Q 010644 133 YVTLRIHASEEAALMELLNFMYSSTLS-------------------------TTTPTALLDVLMAADKFEVASCMRYCSR 187 (505)
Q Consensus 133 ~v~l~~~~~~~~~f~~ll~fiYtg~~~-------------------------~~~~~~~~~ll~aA~~~~v~~l~~~C~~ 187 (505)
.|.|+ +|....|..+++|++.-+-. ++. .++.+++.||++|+++.|...|++
T Consensus 45 ~IPl~--nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~Flk~d~-~tLfdli~AAnyLdi~gLl~~~ck 121 (162)
T KOG1724|consen 45 PIPLP--NVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAEFLKVDQ-GTLFDLILAANYLDIKGLLDLTCK 121 (162)
T ss_pred ccccC--ccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHHHHhcCH-HHHHHHHHHhhhcccHHHHHHHHH
Confidence 45555 99999999999999873311 222 479999999999999999999999
Q ss_pred hccc
Q 010644 188 LLRN 191 (505)
Q Consensus 188 ~L~~ 191 (505)
.+..
T Consensus 122 ~va~ 125 (162)
T KOG1724|consen 122 TVAN 125 (162)
T ss_pred HHHH
Confidence 8877
No 56
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=89.25 E-value=0.49 Score=47.00 Aligned_cols=42 Identities=14% Similarity=0.217 Sum_probs=37.1
Q ss_pred cCCCeEEEEeCCCCeEEe------ccccccceEEEeeCCeEeeecceeecCC
Q 010644 360 RPVKVVEFELPRQQCVVY------LDLKREECAHLFPAGRIYSQAFHLGGQG 405 (505)
Q Consensus 360 ~~~~~Ve~Ydp~~~~W~~------l~~~R~~~~~~~~~g~IY~~~~viGG~~ 405 (505)
...+...++||++..|.. -|.+|...++++.+|++| .+||..
T Consensus 265 ~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~----LFGGTs 312 (392)
T KOG4693|consen 265 VHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVY----LFGGTS 312 (392)
T ss_pred hhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEE----EecCCC
Confidence 346789999999999987 678899999999999999 999974
No 57
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=89.22 E-value=0.67 Score=50.53 Aligned_cols=41 Identities=10% Similarity=0.029 Sum_probs=37.4
Q ss_pred CCCeEEEEeCCCCeEEe------ccccccceEEEeeCCeEeeecceeecCC
Q 010644 361 PVKVVEFELPRQQCVVY------LDLKREECAHLFPAGRIYSQAFHLGGQG 405 (505)
Q Consensus 361 ~~~~Ve~Ydp~~~~W~~------l~~~R~~~~~~~~~g~IY~~~~viGG~~ 405 (505)
.++.+..||+.+++|.. .|.||..|++++.++++| ++||..
T Consensus 188 ~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~----v~gG~~ 234 (482)
T KOG0379|consen 188 SLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLL----VFGGGD 234 (482)
T ss_pred ceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEE----EEeccc
Confidence 46889999999999998 678999999999999999 999964
No 58
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=88.58 E-value=0.71 Score=48.61 Aligned_cols=90 Identities=18% Similarity=0.295 Sum_probs=64.6
Q ss_pred EEEE--EEEEeeeeeeeccC--ccccccCCCccccccchhhhHHHHHHHHhhhhhcccCCcccCCcc--EEEEecCCCCH
Q 010644 70 VLRV--KTVHISSPILAAKS--PFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQR--YVTLRIHASEE 143 (505)
Q Consensus 70 ~~~v--~~~~~hr~iLaa~S--~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~~~--~v~l~~~~~~~ 143 (505)
-+-| +.|...+.-|+-.. .+|.+ +|++.+.-.... .|-| +=+|
T Consensus 14 ~lNVGGriF~Ts~qTL~~~~~DSffsa----------------------------L~s~~~~s~~~~~~~iFI---DRDP 62 (465)
T KOG2714|consen 14 KLNVGGRIFETSAQTLTWIPRDSFFSA----------------------------LLSGRINSLKDESGAIFI---DRDP 62 (465)
T ss_pred EEecCceEEecchhhhhcCCcchHHHH----------------------------HhcCccccccCCCCceEe---cCCc
Confidence 3555 35888887776544 57877 888765543332 3544 7899
Q ss_pred HHHHHHHHHHhcCCccCCccchHHHHHH-HHhHHHhhhhHH---HHhhhccc
Q 010644 144 AALMELLNFMYSSTLSTTTPTALLDVLM-AADKFEVASCMR---YCSRLLRN 191 (505)
Q Consensus 144 ~~f~~ll~fiYtg~~~~~~~~~~~~ll~-aA~~~~v~~l~~---~C~~~L~~ 191 (505)
+.|..+|+|+-||++.+.. -....++. -|.+||+++|.+ +|++.+..
T Consensus 63 dlFaviLn~LRTg~L~~~g-~~~~~llhdEA~fYGl~~llrrl~~~~~~F~G 113 (465)
T KOG2714|consen 63 DLFAVILNLLRTGDLDASG-VFPERLLHDEAMFYGLTPLLRRLTLCEELFDG 113 (465)
T ss_pred hHHHHHHHHHhcCCCCCcc-CchhhhhhhhhhhcCcHHHHHHhhcCcccccc
Confidence 9999999999999999964 44455555 899999999886 66665443
No 59
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=87.24 E-value=0.75 Score=32.64 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=19.9
Q ss_pred eeEEE-------ecCCCeEEEEeCCCCeEEec
Q 010644 354 ERAYK-------YRPVKVVEFELPRQQCVVYL 378 (505)
Q Consensus 354 ~~ly~-------~~~~~~Ve~Ydp~~~~W~~l 378 (505)
+.||+ ...+++|++||+.+++|..+
T Consensus 12 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 43 (47)
T PF01344_consen 12 NKIYVIGGYDGNNQPTNSVEVYDPETNTWEEL 43 (47)
T ss_dssp TEEEEEEEBESTSSBEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeeecccCceeeeEEEEeCCCCEEEEc
Confidence 46776 24567899999999999983
No 60
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=87.04 E-value=0.51 Score=38.12 Aligned_cols=33 Identities=21% Similarity=0.483 Sum_probs=27.7
Q ss_pred chHHHHHHHHhHHHhhhhHHHHhhhcccCccCcc
Q 010644 164 TALLDVLMAADKFEVASCMRYCSRLLRNLPMTCE 197 (505)
Q Consensus 164 ~~~~~ll~aA~~~~v~~l~~~C~~~L~~~~l~~~ 197 (505)
+.+.+|+.||++|+++.|.+.|++.+.. .+.-.
T Consensus 14 ~~L~~l~~AA~yL~I~~L~~~~~~~iA~-~i~gk 46 (78)
T PF01466_consen 14 DELFDLLNAANYLDIKGLLDLCCKYIAN-MIKGK 46 (78)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHH-HHTTS
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHH-HhcCC
Confidence 7899999999999999999999998887 44433
No 61
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=82.43 E-value=0.76 Score=46.92 Aligned_cols=66 Identities=14% Similarity=0.080 Sum_probs=53.1
Q ss_pred hhHHHHhhhcccCccCcccHHHHHhhcchhhhcccchhHHHHHHHHHhhccccccccchhhcCCCHHHHHHh
Q 010644 180 SCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAV 251 (505)
Q Consensus 180 ~l~~~C~~~L~~~~l~~~Ncl~il~~A~~~~~a~~~~~L~~~~~~fI~~nf~~v~~~~~eFl~L~~~~L~~L 251 (505)
=|++++.+--. .++++|++.++-.++.. .++.|.+.|+.|+..|+.+|+...-++..|+.+.+..|
T Consensus 60 WLm~yv~~~~p--~l~~~NvvsIliSS~FL----~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RL 125 (317)
T PF11822_consen 60 WLMRYVKGEPP--SLTPSNVVSILISSEFL----QMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRL 125 (317)
T ss_pred HHHHHhhcCCC--cCCcCcEEEeEehhhhh----ccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHH
Confidence 35555555222 69999999999877765 89999999999999999999984457778998888776
No 62
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=77.62 E-value=1.5 Score=38.68 Aligned_cols=59 Identities=17% Similarity=0.287 Sum_probs=44.1
Q ss_pred EEEEecCCCCHHHHHHHHHHHhcCCccCCc------------------------cchHHHHHHHHhHHHhhhhHHHHhhh
Q 010644 133 YVTLRIHASEEAALMELLNFMYSSTLSTTT------------------------PTALLDVLMAADKFEVASCMRYCSRL 188 (505)
Q Consensus 133 ~v~l~~~~~~~~~f~~ll~fiYtg~~~~~~------------------------~~~~~~ll~aA~~~~v~~l~~~C~~~ 188 (505)
.+.++.+.+...+|+.+++|+-..+-..+. .+.++++..+|+|+.++.|.++||+.
T Consensus 38 n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKi 117 (158)
T COG5201 38 NYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKI 117 (158)
T ss_pred CCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHH
Confidence 344445589999999999999543322210 13578999999999999999999998
Q ss_pred ccc
Q 010644 189 LRN 191 (505)
Q Consensus 189 L~~ 191 (505)
+.+
T Consensus 118 vae 120 (158)
T COG5201 118 VAE 120 (158)
T ss_pred HHH
Confidence 777
No 63
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=76.78 E-value=4.1 Score=42.99 Aligned_cols=40 Identities=18% Similarity=-0.034 Sum_probs=35.8
Q ss_pred CCCeEEEEeCCCCeEEe------ccccccceEEEee-CCeEeeecceeecC
Q 010644 361 PVKVVEFELPRQQCVVY------LDLKREECAHLFP-AGRIYSQAFHLGGQ 404 (505)
Q Consensus 361 ~~~~Ve~Ydp~~~~W~~------l~~~R~~~~~~~~-~g~IY~~~~viGG~ 404 (505)
-.+.|.+||..+-+|.. .|.+|++|...+. .|.|| +.||+
T Consensus 205 YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~----vyGGY 251 (521)
T KOG1230|consen 205 YYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIV----VYGGY 251 (521)
T ss_pred EeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEE----EEcch
Confidence 36789999999999998 5889999999886 99999 99997
No 64
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=74.70 E-value=2.4 Score=30.37 Aligned_cols=21 Identities=24% Similarity=0.359 Sum_probs=13.6
Q ss_pred cccceEEEee-CCeEeeecceeecCC
Q 010644 381 KREECAHLFP-AGRIYSQAFHLGGQG 405 (505)
Q Consensus 381 ~R~~~~~~~~-~g~IY~~~~viGG~~ 405 (505)
+|..|+++.. +++|| ++||..
T Consensus 1 pR~~h~~~~~~~~~i~----v~GG~~ 22 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIY----VFGGRD 22 (49)
T ss_dssp --BS-EEEEE-TTEEE----EE--EE
T ss_pred CcceEEEEEEeCCeEE----EECCCC
Confidence 5888988888 69999 999974
No 65
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=73.78 E-value=4.8 Score=30.88 Aligned_cols=48 Identities=13% Similarity=0.152 Sum_probs=35.1
Q ss_pred EEEEeeeeeeeccCccccccCCCccccccchhhhHHHHHHHHhhhhhcccCCcccCCccEEEEecCCCCHHHHHHHHHHH
Q 010644 74 KTVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLRIHASEEAALMELLNFM 153 (505)
Q Consensus 74 ~~~~~hr~iLaa~S~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~~~~v~l~~~~~~~~~f~~ll~fi 153 (505)
+.|.+.+.+. ..|..++. |+.+...+.. .|.|+ +++...|+.+++|+
T Consensus 11 ~~f~V~~~~a-~~S~~i~~----------------------------ml~~~~~~~~--~Ipl~--~v~~~~L~kViewc 57 (62)
T PF03931_consen 11 QEFEVSREAA-KQSKTIKN----------------------------MLEDLGDEDE--PIPLP--NVSSRILKKVIEWC 57 (62)
T ss_dssp EEEEEEHHHH-TTSHHHHH----------------------------HHHCTCCCGT--EEEET--TS-HHHHHHHHHHH
T ss_pred CEEEeeHHHH-HHhHHHHH----------------------------HHhhhccccc--ccccC--ccCHHHHHHHHHHH
Confidence 3677777665 58999998 8876333322 56666 99999999999999
Q ss_pred h
Q 010644 154 Y 154 (505)
Q Consensus 154 Y 154 (505)
+
T Consensus 58 ~ 58 (62)
T PF03931_consen 58 E 58 (62)
T ss_dssp H
T ss_pred H
Confidence 6
No 66
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=73.76 E-value=1.2 Score=45.86 Aligned_cols=131 Identities=18% Similarity=0.199 Sum_probs=98.4
Q ss_pred EEEeeeeeeeccCccccccCCCccccccchhhhHHHHHHHHhhhhhcccCCcccCCccEEEEecCCCCHHHHHHHHHHHh
Q 010644 75 TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLRIHASEEAALMELLNFMY 154 (505)
Q Consensus 75 ~~~~hr~iLaa~S~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~~~~v~l~~~~~~~~~f~~ll~fiY 154 (505)
.+.+|+.+|+..|+.|.. +....-..+....+.+. +++..++..+..++|
T Consensus 37 ~~~~~s~~l~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~--~~~c~~~~~~~~~l~ 86 (319)
T KOG1778|consen 37 LIPAHSLVLGPASPVFKK----------------------------VLKQPCRKSLVKGNKIL--GVPCKAVNVFIRFLY 86 (319)
T ss_pred hhHHHHhcccccchHHHH----------------------------HHhhhcchhhhhcceee--cccccccchhhhhhc
Confidence 589999999999999988 22222222333445555 888899999999999
Q ss_pred cCCccCCc-cchHHHHHHHHhHHHhhhhHHHHhhhcccCccCcccHHHHHhhcchhhhcccchhHHHHHHHHHhhccccc
Q 010644 155 SSTLSTTT-PTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDI 233 (505)
Q Consensus 155 tg~~~~~~-~~~~~~ll~aA~~~~v~~l~~~C~~~L~~~~l~~~Ncl~il~~A~~~~~a~~~~~L~~~~~~fI~~nf~~v 233 (505)
.+ ++... ..-...++.+...+-++..+.-|...+..--++..|++..+..+..+ ....|..+....+...|...
T Consensus 87 ~~-~ek~e~~~~~ihll~~~~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~----~~~~lr~a~hss~~~~~~~H 161 (319)
T KOG1778|consen 87 SS-LEKHEMVFFDIHLLALSHVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHC----DFSDLRRAKHSSIMLLFDLH 161 (319)
T ss_pred cc-hhhhHHHHHHHHHHhhhhhhhccCccccCCccccchhhhhHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHHHH
Confidence 98 44322 12244555566788899999999888877347888999999999887 88999999999999888888
Q ss_pred cccchhhc
Q 010644 234 SKFQEEVL 241 (505)
Q Consensus 234 ~~~~~eFl 241 (505)
.+ ++.+.
T Consensus 162 ~~-t~~~~ 168 (319)
T KOG1778|consen 162 LQ-TEKWF 168 (319)
T ss_pred hc-ccCce
Confidence 77 65544
No 67
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=70.22 E-value=38 Score=30.19 Aligned_cols=108 Identities=19% Similarity=0.255 Sum_probs=51.9
Q ss_pred CCeEeeecceee--cCCccccceecccCCcceeEeEEEEeeec---CC--CceeeeeeeeeeecCCchhhhccccc-eeE
Q 010644 391 AGRIYSQAFHLG--GQGFFLSAHCNMDQQSSFHCFGLFLGMQE---KG--SVSFAVDYEFAARIKPTEEYVSKYKG-NYT 462 (505)
Q Consensus 391 ~g~IY~~~~viG--G~~~~l~~~~~~~~~~~~~~~g~~~g~~~---~~--~~~~~~~~~~~~r~~~~~~f~~~~~~-~~~ 462 (505)
+..++|..|.+| |+.|.+...-+-+........++++.+.. |. +-++.+.+.|...+.. +. ...+. ..+
T Consensus 22 ~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~~~l~d~~-~~--~~~~~~~~~ 98 (149)
T cd00270 22 NTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKITLTLLDQS-DD--SKRKHITET 98 (149)
T ss_pred CceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEEEEEECCC-Cc--cccCceEEE
Confidence 468999999999 88887643211111111123455654422 11 1124455555555532 21 11111 122
Q ss_pred ecCCeee---e----eecCCCCCceeEEe----cCcceeecceeEEEEee
Q 010644 463 FTGGKAV---G----YRNLFGIPWTAFMA----DDSIYFINGNLHLRAEL 501 (505)
Q Consensus 463 ~tg~~~~---~----~~~~~~~~~~~~~~----~~~~~~i~~~~~l~~~~ 501 (505)
++..... + .....+-=|..||. .++.|-.|+.+++|+++
T Consensus 99 ~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~~gfl~dD~l~I~~~v 148 (149)
T cd00270 99 FMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLESRGYVKDDTLFIKVEV 148 (149)
T ss_pred EEcCCchHhhcCCCcccCCCCcCcceEeEHHHhccCCCEeCCEEEEEEEE
Confidence 2110000 0 00112334566665 34568899999999886
No 68
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=69.51 E-value=18 Score=32.57 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=19.8
Q ss_pred CceeEEe----cCcceeecceeEEEEeee
Q 010644 478 PWTAFMA----DDSIYFINGNLHLRAELT 502 (505)
Q Consensus 478 ~~~~~~~----~~~~~~i~~~~~l~~~~~ 502 (505)
-|..||. ..+.|..|+-+++|.+++
T Consensus 119 G~~~fi~~~~Le~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 119 GYVEFAHIEDLLQRGFVKNDTLLIKIEVN 147 (147)
T ss_pred eEceeeEHHHhhhCCCccCCEEEEEEEEC
Confidence 4677776 456788999999999875
No 69
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=69.43 E-value=5.5 Score=42.03 Aligned_cols=38 Identities=11% Similarity=0.092 Sum_probs=31.8
Q ss_pred CeEEEEeCCCCeEEe-----ccccccceEEEe-eCCeEeeecceeecC
Q 010644 363 KVVEFELPRQQCVVY-----LDLKREECAHLF-PAGRIYSQAFHLGGQ 404 (505)
Q Consensus 363 ~~Ve~Ydp~~~~W~~-----l~~~R~~~~~~~-~~g~IY~~~~viGG~ 404 (505)
+.+..||..+++|.. -|.||+.|.+++ +.|.+| +.||.
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~----~fGGE 141 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILW----LFGGE 141 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEE----Eeccc
Confidence 568899999999988 678899876655 569999 99994
No 70
>PF07713 DUF1604: Protein of unknown function (DUF1604); InterPro: IPR011666 This domain is found at the N terminus of several eukaryotic RNA processing proteins (e.g Q8N3B7 from SWISSPROT).
Probab=68.21 E-value=2 Score=35.27 Aligned_cols=16 Identities=50% Similarity=0.829 Sum_probs=13.6
Q ss_pred EecCCeeeeeecCCCC
Q 010644 462 TFTGGKAVGYRNLFGI 477 (505)
Q Consensus 462 ~~tg~~~~~~~~~~~~ 477 (505)
+||||+|+||.|-=|.
T Consensus 23 AFtGGfSAGyfNTVGS 38 (87)
T PF07713_consen 23 AFTGGFSAGYFNTVGS 38 (87)
T ss_pred cccCCcccceeeccCC
Confidence 6899999999997653
No 71
>smart00061 MATH meprin and TRAF homology.
Probab=66.84 E-value=20 Score=28.65 Aligned_cols=74 Identities=11% Similarity=0.110 Sum_probs=42.0
Q ss_pred eCCeEeeecceeecCCccccceecccCCcceeEeEEEEeeecCCC----ceeeeeeeeeeecCCchhhhccccceeEecC
Q 010644 390 PAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGS----VSFAVDYEFAARIKPTEEYVSKYKGNYTFTG 465 (505)
Q Consensus 390 ~~g~IY~~~~viGG~~~~l~~~~~~~~~~~~~~~g~~~g~~~~~~----~~~~~~~~~~~r~~~~~~f~~~~~~~~~~tg 465 (505)
.+..++|..|.+||..|.+....+ -...++++.+.+... -++..++.+-.-+...... .....++|..
T Consensus 14 ~~~~~~S~~f~~~g~~W~i~~~p~------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~--~~~~~~~F~~ 85 (95)
T smart00061 14 EGESYFSPSEEHFNIPWRLKIYRK------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSL--SKKDKHVFEK 85 (95)
T ss_pred cCceEeCChhEEcCceeEEEEEEc------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEE--eeeeeEEEcC
Confidence 467899999999999999854433 123567765533221 1366666665555432233 2234566664
Q ss_pred Ceeeee
Q 010644 466 GKAVGY 471 (505)
Q Consensus 466 ~~~~~~ 471 (505)
+...|+
T Consensus 86 ~~~~G~ 91 (95)
T smart00061 86 PSGWGF 91 (95)
T ss_pred CCccce
Confidence 333344
No 72
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=64.54 E-value=1.6 Score=45.39 Aligned_cols=86 Identities=13% Similarity=0.067 Sum_probs=56.1
Q ss_pred CCCccEEEEE---EEEEeeeeeeeccCccccccCCCccccccchhhhHHHHHHHHhhhhhcccCCcccCCccEEEEecCC
Q 010644 64 SMDLSTVLRV---KTVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLRIHA 140 (505)
Q Consensus 64 ~~~~dv~~~v---~~~~~hr~iLaa~S~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~~~~v~l~~~~ 140 (505)
+...|+++.+ +.|-|||..|+|+|.+|.. +.+ ||... ..+|+-. .
T Consensus 147 ~~~~di~f~~q~g~~f~ahkfll~arSs~~~~--k~v-----------------------~~~~~-----~heI~~~--~ 194 (516)
T KOG0511|consen 147 GCCHDIDFLQQEGANFDAHKFLLEARSSNYFP--KDV-----------------------MFYVQ-----GHEIEAH--R 194 (516)
T ss_pred ccccchHHHhhccccccHHHHHHHhhhcccCc--hhh-----------------------hhccc-----cCchhhh--h
Confidence 4456788877 2588999999999998876 111 33221 1223211 5
Q ss_pred CCHHHHHHHHHHHhcCCccCCccchHHHHHHHHhHHHhhhhH
Q 010644 141 SEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCM 182 (505)
Q Consensus 141 ~~~~~f~~ll~fiYtg~~~~~~~~~~~~ll~aA~~~~v~~l~ 182 (505)
+-+.+|..++.|+|-..-.+- ++.--+++.+..+|+++.+.
T Consensus 195 v~~~~f~~flk~lyl~~na~~-~~qynallsi~~kF~~e~l~ 235 (516)
T KOG0511|consen 195 VILSAFSPFLKQLYLNTNAEW-KDQYNALLSIEVKFSKEKLS 235 (516)
T ss_pred hhHhhhhHHHHHHHHhhhhhh-hhHHHHHHhhhhhccHHHhH
Confidence 778999999999997733333 24456677777777766554
No 73
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=62.79 E-value=12 Score=40.57 Aligned_cols=49 Identities=10% Similarity=0.068 Sum_probs=38.3
Q ss_pred CCCeEEEEeCCCCeEEe----------ccccccceEEEeeCCeEeeecceeecCC-----ccccceec
Q 010644 361 PVKVVEFELPRQQCVVY----------LDLKREECAHLFPAGRIYSQAFHLGGQG-----FFLSAHCN 413 (505)
Q Consensus 361 ~~~~Ve~Ydp~~~~W~~----------l~~~R~~~~~~~~~g~IY~~~~viGG~~-----~~l~~~~~ 413 (505)
..++.-|.|..+..|.. .|.+|++|+++.++.++| +-.|++ |...++|+
T Consensus 292 CTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlY----iWSGRDGYrKAwnnQVCCk 355 (830)
T KOG4152|consen 292 CTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLY----IWSGRDGYRKAWNNQVCCK 355 (830)
T ss_pred eccceeeeeecchheeeeeeccccccccccccccceeEEeccEEE----EEeccchhhHhhccccchh
Confidence 35678899999999987 567899999999999999 777753 33445564
No 74
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=58.98 E-value=14 Score=30.43 Aligned_cols=61 Identities=11% Similarity=0.219 Sum_probs=38.0
Q ss_pred HHHHHHHhHHHhhhhHHHHhhhcccCccC------------cccHHHHHhhcchhhhcccchhHHHHHHHHHhhcc
Q 010644 167 LDVLMAADKFEVASCMRYCSRLLRNLPMT------------CESALLYLDLPSSVLMADAVQPLTDTAKQFLAARY 230 (505)
Q Consensus 167 ~~ll~aA~~~~v~~l~~~C~~~L~~~~l~------------~~Ncl~il~~A~~~~~a~~~~~L~~~~~~fI~~nf 230 (505)
.+++..|+.|+...|.+.|.+|+.. +.. .+....++..-+. ...+-..+.+++..|+..+.
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~-nf~~v~~~~~f~~L~~~~l~~iL~~~~l--~v~~E~~v~~av~~W~~~~~ 74 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAK-NFNEVSKSDEFLELPFDQLIEILSSDDL--NVSSEDDVFEAVLRWLKHNP 74 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH-THHHHTTSHHHHCS-HHHHHHHHHTSS----ECTCCCHHHHHHHHHHCTH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHH-HHHHHccchhhhcCCHHHHHHHHhcccc--ccccHHHHHHHHHHHHHhCH
Confidence 5789999999999999999999987 432 2333333332211 01123467777777776654
No 75
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=53.49 E-value=18 Score=39.29 Aligned_cols=39 Identities=13% Similarity=-0.035 Sum_probs=33.7
Q ss_pred CCeEEEEeCCCCeEEe------ccccccceEEEeeCCeEeeecceeecC
Q 010644 362 VKVVEFELPRQQCVVY------LDLKREECAHLFPAGRIYSQAFHLGGQ 404 (505)
Q Consensus 362 ~~~Ve~Ydp~~~~W~~------l~~~R~~~~~~~~~g~IY~~~~viGG~ 404 (505)
+.....-|..+-.|.. .|.||+-|++..+++++| +.||-
T Consensus 229 LgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMy----vfGGW 273 (830)
T KOG4152|consen 229 LGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMY----VFGGW 273 (830)
T ss_pred ccceeEEecceeecccccccCCCCCCcccccceeecceeE----Eecce
Confidence 3456667889999987 689999999999999999 99993
No 76
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=53.15 E-value=13 Score=37.81 Aligned_cols=58 Identities=17% Similarity=0.298 Sum_probs=40.2
Q ss_pred cccCCcc---cCCccEEEEecCCCCHHHHHHHHHHHhcCCccCCccchHHHHHHHHhHHHhh
Q 010644 121 LFSNGMR---ESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVA 179 (505)
Q Consensus 121 ~f~~~~~---es~~~~v~l~~~~~~~~~f~~ll~fiYtg~~~~~~~~~~~~ll~aA~~~~v~ 179 (505)
||.+++. .....+.++. ++++..+|+++|+|--+|.+.....-.+-+|-+|.||+.|+
T Consensus 125 mf~~g~~f~~pNErgEyeVA-dGi~s~vFRAILdYYksG~iRCP~~vSvpELrEACDYLlip 185 (438)
T KOG3840|consen 125 MFSMGADLVSPNERDEFEVA-DGMTSSCFRAILDYYQSGTMRCPSSVSVSELREACDYLLVP 185 (438)
T ss_pred hhcccccccCCCcCCceehh-cchhHHHHHHHHHHHhcCceeCCCCCchHHHHhhcceEEee
Confidence 6666432 2223444443 48999999999999999999876545566777777776554
No 77
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.51 E-value=17 Score=37.72 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=31.8
Q ss_pred CCeEEEEeCCCCeEEec----cccccceEEEeeCC-eEeeecceeecC
Q 010644 362 VKVVEFELPRQQCVVYL----DLKREECAHLFPAG-RIYSQAFHLGGQ 404 (505)
Q Consensus 362 ~~~Ve~Ydp~~~~W~~l----~~~R~~~~~~~~~g-~IY~~~~viGG~ 404 (505)
.+++..|||.+|+|..| |..-..++++.+++ .|| +.||.
T Consensus 112 ~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~----f~GGv 155 (381)
T COG3055 112 FNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIY----FFGGV 155 (381)
T ss_pred eeeeEEecCCCChhheeccccccccccceeEecCCceEE----EEccc
Confidence 46789999999999994 34455678888888 999 99996
No 78
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=47.46 E-value=28 Score=32.39 Aligned_cols=55 Identities=15% Similarity=0.159 Sum_probs=46.3
Q ss_pred EEEecCCCCHHHHHHHHHHHhcCCccCCccchHHHHHHHHhHHHhhhhHHHHhhhccc
Q 010644 134 VTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRN 191 (505)
Q Consensus 134 v~l~~~~~~~~~f~~ll~fiYtg~~~~~~~~~~~~ll~aA~~~~v~~l~~~C~~~L~~ 191 (505)
..|. +-+|.-|--+|+|+-.|++.++. -.=..+|.-|++|.+++|.+...+.+..
T Consensus 66 AYlI--DRDP~~FgpvLNylRhgklvl~~-l~eeGvL~EAefyn~~~li~likd~i~d 120 (210)
T KOG2715|consen 66 AYLI--DRDPFYFGPVLNYLRHGKLVLNK-LSEEGVLEEAEFYNDPSLIQLIKDRIQD 120 (210)
T ss_pred ceEe--ccCcchHHHHHHHHhcchhhhhh-hhhhccchhhhccCChHHHHHHHHHHHH
Confidence 4454 78999999999999999999984 5567899999999999999777766665
No 79
>COG3002 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.57 E-value=11 Score=41.78 Aligned_cols=93 Identities=18% Similarity=0.257 Sum_probs=61.9
Q ss_pred eeecCCccccceecccCCcceeEeEEEEeeecCCCc---------eeee----eeeeeeecCCchhhhccccceeEecCC
Q 010644 400 HLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSV---------SFAV----DYEFAARIKPTEEYVSKYKGNYTFTGG 466 (505)
Q Consensus 400 viGG~~~~l~~~~~~~~~~~~~~~g~~~g~~~~~~~---------~~~~----~~~~~~r~~~~~~f~~~~~~~~~~tg~ 466 (505)
++|-.. ++.+|+.+-+.-.|+|.- .+|+++ +.+| +-+|++.|....-|-+++|-.||+|||
T Consensus 714 IIgrRq--lTK~~~LeGrvFlHnYd~----r~D~~G~LL~~IisgPalVaqWINmqYyaSTvdn~~yGSGnKa~hnVvgg 787 (880)
T COG3002 714 IIGRRQ--LTKQAKLEGRVFLHNYDW----RRDPEGQLLTQIISGPALVAQWINMQYYASTVDNHRYGSGNKATHNVVGG 787 (880)
T ss_pred EEehHH--hhhccCCccceeeeccCc----ccCCcccHHHHHhcccHHHHHHhhhhhheeccccccccCCchhhheeecc
Confidence 888764 556666666555665541 112221 2222 256677888888999999999999999
Q ss_pred eee---eeecCC-CCCceeEEecCcceeecceeEEEEeeeee
Q 010644 467 KAV---GYRNLF-GIPWTAFMADDSIYFINGNLHLRAELTIR 504 (505)
Q Consensus 467 ~~~---~~~~~~-~~~~~~~~~~~~~~~i~~~~~l~~~~~~~ 504 (505)
-+| .|.|+. |.+|.++++++-+ +|--+-|||+
T Consensus 788 ~GvmqGn~sdlr~GL~~qsv~a~~~~------~H~p~RL~vv 823 (880)
T COG3002 788 IGVMQGNGSDLRCGLALQSVHAGQGW------RHEPLRLTVV 823 (880)
T ss_pred eeEEeccccchhccchHHHHHhccCc------cccceeEEEE
Confidence 877 677776 6899999988764 3555555554
No 80
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=36.67 E-value=38 Score=33.55 Aligned_cols=41 Identities=20% Similarity=0.163 Sum_probs=33.8
Q ss_pred CCCeEEEEeCCC----CeEEe----ccccccceEEEe-eCCeEeeecceeecCC
Q 010644 361 PVKVVEFELPRQ----QCVVY----LDLKREECAHLF-PAGRIYSQAFHLGGQG 405 (505)
Q Consensus 361 ~~~~Ve~Ydp~~----~~W~~----l~~~R~~~~~~~-~~g~IY~~~~viGG~~ 405 (505)
..+.+..|+|.. ..|.+ |..+|.+.++.. .||++. |+||..
T Consensus 89 G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vl----IvGG~~ 138 (243)
T PF07250_consen 89 GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVL----IVGGSN 138 (243)
T ss_pred cccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEE----EEeCcC
Confidence 356788999986 67987 888999987765 699999 999964
No 81
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=35.92 E-value=65 Score=31.46 Aligned_cols=67 Identities=10% Similarity=0.141 Sum_probs=46.4
Q ss_pred cccCCcccC--CccEEEEecCCCCHHHHHHHHHHHhcCCccCCc-cchHHHHHHHHhHHHhhhhHHHHhhhcc
Q 010644 121 LFSNGMRES--EQRYVTLRIHASEEAALMELLNFMYSSTLSTTT-PTALLDVLMAADKFEVASCMRYCSRLLR 190 (505)
Q Consensus 121 ~f~~~~~es--~~~~v~l~~~~~~~~~f~~ll~fiYtg~~~~~~-~~~~~~ll~aA~~~~v~~l~~~C~~~L~ 190 (505)
||++...-. .....-| +=+-..|+-+|+|+-|..+.+.. -.++..+..-|++|+++.+...+.+-..
T Consensus 38 ~f~~~~~~~~d~~g~~fI---DRDG~lFRyvL~~LRt~~l~lpe~f~e~~~L~rEA~f~~l~~~~~~l~~~~~ 107 (221)
T KOG2723|consen 38 MFSGELPLLRDSKGRYFI---DRDGFLFRYVLDYLRTKALLLPEDFAEVERLVREAEFFQLEAPVTYLLNSGQ 107 (221)
T ss_pred hcCCCCCccccccccEEE---cCCcchHHHHHHHhcccccccchhhhhHHHHHHHHHHHccccHHHHHhcccc
Confidence 787632222 2233444 56778999999999996666542 1468899999999999988866555433
No 82
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=33.38 E-value=2.4e+02 Score=26.25 Aligned_cols=31 Identities=13% Similarity=0.324 Sum_probs=22.9
Q ss_pred eecCCCCCceeEEe----cCcceeecceeEEEEee
Q 010644 471 YRNLFGIPWTAFMA----DDSIYFINGNLHLRAEL 501 (505)
Q Consensus 471 ~~~~~~~~~~~~~~----~~~~~~i~~~~~l~~~~ 501 (505)
|++..|-=|..||. ....|.-|+.|.+++++
T Consensus 132 ~~~~~g~G~~~Fis~~~L~~r~ylk~dtl~i~~~~ 166 (167)
T cd03771 132 CYRGPGYGWSTFISHSRLRRRDFLKGDDLIILLDF 166 (167)
T ss_pred ccccCccccccceeHHHhccCCCCcCCEEEEEEEe
Confidence 45666788888887 33448888888888875
No 83
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=32.46 E-value=75 Score=34.45 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=37.4
Q ss_pred ccCcccHHHHHhhcchhhhcccchhHHHHHHHHHhhccccccccchhhcCCCH
Q 010644 193 PMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPL 245 (505)
Q Consensus 193 ~l~~~Ncl~il~~A~~~~~a~~~~~L~~~~~~fI~~nf~~v~~~~~eFl~L~~ 245 (505)
.+.++||+.++..|.+| ..+.|.+.|.+||..+... ..+|+.|+.
T Consensus 184 ~~~~dtvi~tl~~AkKY----~VpaLer~CVkflr~~l~~----~naf~~L~q 228 (521)
T KOG2075|consen 184 KLAADTVITTLYAAKKY----LVPALERQCVKFLRKNLMA----DNAFLELFQ 228 (521)
T ss_pred hhhHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHhcCC----hHHHHHHHH
Confidence 58899999999999998 8999999999999988654 345555554
No 84
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=29.40 E-value=3.1e+02 Score=24.77 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=18.1
Q ss_pred CceeEEe----cCcceeecceeEEEEee
Q 010644 478 PWTAFMA----DDSIYFINGNLHLRAEL 501 (505)
Q Consensus 478 ~~~~~~~----~~~~~~i~~~~~l~~~~ 501 (505)
-|+.||. ..+.|..|+-+++|.++
T Consensus 126 G~~~fi~~~~Le~~~yl~dD~l~Irc~v 153 (154)
T cd03781 126 GYPKFISHEDLKKRNYIKDDAIFLRASV 153 (154)
T ss_pred chhHeeEHHHHhhCCcccCCEEEEEEEe
Confidence 4567776 45678889999999875
No 85
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=28.21 E-value=58 Score=26.86 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=27.8
Q ss_pred cccHHHHHhhcchhhhcccchhHHHHHHHHHhhc
Q 010644 196 CESALLYLDLPSSVLMADAVQPLTDTAKQFLAAR 229 (505)
Q Consensus 196 ~~Ncl~il~~A~~~~~a~~~~~L~~~~~~fI~~n 229 (505)
.+++..++.+|..+ +++.|.+.|..++.++
T Consensus 81 ~~~~~~ll~lA~~~----~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKL----QIPELKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHT----TBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----CcHHHHHHHHHHHHhC
Confidence 88999999999987 9999999999999875
No 86
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=24.37 E-value=1.2e+02 Score=27.65 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=14.6
Q ss_pred eEeeecc--eeecCCcccc
Q 010644 393 RIYSQAF--HLGGQGFFLS 409 (505)
Q Consensus 393 ~IY~~~~--viGG~~~~l~ 409 (505)
.|+|+.| .+||+.|.+.
T Consensus 24 ~i~S~~Fyt~~~Gy~w~i~ 42 (148)
T cd03780 24 SIFSQPFYTSRCGYRLCAR 42 (148)
T ss_pred EEECCCcccCCCCeeEEEE
Confidence 5999999 9999988663
No 87
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=23.04 E-value=5e+02 Score=26.61 Aligned_cols=114 Identities=17% Similarity=0.236 Sum_probs=59.1
Q ss_pred EEEEeCCCCeEEe--cc---ccccceEEEeeCCeEeeecceeecCCccccceecccCCcceeEeEEEEee-ecCCCce--
Q 010644 365 VEFELPRQQCVVY--LD---LKREECAHLFPAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGM-QEKGSVS-- 436 (505)
Q Consensus 365 Ve~Ydp~~~~W~~--l~---~~R~~~~~~~~~g~IY~~~~viGG~~~~l~~~~~~~~~~~~~~~g~~~g~-~~~~~~~-- 436 (505)
|...|..-.+... +| -.-+.|..++-++.+| ++||..- .-+.+|++ -|-+=+-. +..+.++
T Consensus 133 VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VY----ilGGHsl----~sd~Rpp~---l~rlkVdLllGSP~vsC~ 201 (337)
T PF03089_consen 133 VFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVY----ILGGHSL----ESDSRPPR---LYRLKVDLLLGSPAVSCT 201 (337)
T ss_pred EEEEeccccccccccchhhcCCeEEEEEEecCceEE----EEccEEc----cCCCCCCc---EEEEEEeecCCCceeEEE
Confidence 5556777677665 44 3455677777899999 9999742 22344542 22222211 2222222
Q ss_pred -----eeeeeeeeeecCCchhhh---------ccccceeEec-CCeeeeeecCCCCCceeEEecCccee
Q 010644 437 -----FAVDYEFAARIKPTEEYV---------SKYKGNYTFT-GGKAVGYRNLFGIPWTAFMADDSIYF 490 (505)
Q Consensus 437 -----~~~~~~~~~r~~~~~~f~---------~~~~~~~~~t-g~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (505)
++|---++.+++| .+|+ .|-+-|-.++ ...+.+-...-+-+||.=|.-...||
T Consensus 202 vl~~glSisSAIvt~~~~-~e~iIlGGY~sdsQKRm~C~~V~Ldd~~I~ie~~E~P~Wt~dI~hSrtWF 269 (337)
T PF03089_consen 202 VLQGGLSISSAIVTQTGP-HEYIILGGYQSDSQKRMECNTVSLDDDGIHIEEREPPEWTGDIKHSRTWF 269 (337)
T ss_pred ECCCCceEeeeeEeecCC-CceEEEecccccceeeeeeeEEEEeCCceEeccCCCCCCCCCcCcCcccc
Confidence 4444566777776 5555 1222222333 22233444444567877666433343
Done!