Query 010645
Match_columns 505
No_of_seqs 289 out of 1850
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 02:56:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010645.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010645hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00165 aspartyl protease; Pr 100.0 9E-65 2E-69 529.9 41.5 324 76-505 107-447 (482)
2 cd05490 Cathepsin_D2 Cathepsin 100.0 3.6E-62 7.7E-67 493.5 38.2 324 84-503 1-325 (325)
3 cd06098 phytepsin Phytepsin, a 100.0 2.2E-62 4.9E-67 492.9 36.4 317 80-503 1-317 (317)
4 cd05486 Cathespin_E Cathepsin 100.0 1.1E-61 2.3E-66 488.0 36.0 316 90-503 1-316 (316)
5 cd05487 renin_like Renin stimu 100.0 3.2E-61 6.9E-66 486.5 39.1 325 82-504 1-326 (326)
6 cd05485 Cathepsin_D_like Cathe 100.0 1.2E-60 2.6E-65 482.6 38.3 327 80-503 2-329 (329)
7 cd05478 pepsin_A Pepsin A, asp 100.0 2.9E-60 6.2E-65 477.9 37.4 316 81-503 2-317 (317)
8 cd05477 gastricsin Gastricsins 100.0 1.3E-59 2.8E-64 473.4 38.6 317 87-504 1-318 (318)
9 cd05488 Proteinase_A_fungi Fun 100.0 9.4E-60 2E-64 474.6 37.5 320 80-503 1-320 (320)
10 PTZ00147 plasmepsin-1; Provisi 100.0 4.4E-59 9.5E-64 483.6 41.0 324 75-505 125-450 (453)
11 PTZ00013 plasmepsin 4 (PM4); P 100.0 2.9E-58 6.3E-63 476.5 41.4 323 76-505 125-449 (450)
12 PF00026 Asp: Eukaryotic aspar 100.0 1.9E-55 4.1E-60 442.9 29.8 316 89-504 1-317 (317)
13 cd06097 Aspergillopepsin_like 100.0 2.1E-51 4.5E-56 406.0 30.9 272 90-503 1-278 (278)
14 cd05473 beta_secretase_like Be 100.0 2.8E-50 6.1E-55 412.7 32.9 315 88-505 2-346 (364)
15 PLN03146 aspartyl protease fam 100.0 2.1E-49 4.6E-54 412.2 33.0 307 86-504 81-426 (431)
16 cd05474 SAP_like SAPs, pepsin- 100.0 6E-49 1.3E-53 391.9 32.7 278 89-504 2-295 (295)
17 cd06096 Plasmepsin_5 Plasmepsi 100.0 3E-49 6.5E-54 399.1 30.7 282 88-504 2-323 (326)
18 KOG1339 Aspartyl protease [Pos 100.0 5.3E-49 1.2E-53 407.0 32.1 321 77-504 34-392 (398)
19 cd05472 cnd41_like Chloroplast 100.0 6E-48 1.3E-52 385.3 29.2 287 89-504 1-297 (299)
20 cd05471 pepsin_like Pepsin-lik 100.0 5.4E-46 1.2E-50 367.8 34.2 279 90-503 1-283 (283)
21 cd05476 pepsin_A_like_plant Ch 100.0 3.3E-45 7.2E-50 359.1 27.9 248 89-505 1-264 (265)
22 cd05475 nucellin_like Nucellin 100.0 1.3E-44 2.8E-49 356.3 28.4 257 89-505 2-272 (273)
23 cd05489 xylanase_inhibitor_I_l 100.0 4.6E-41 9.9E-46 342.4 27.3 314 96-504 2-361 (362)
24 cd05470 pepsin_retropepsin_lik 99.9 5.2E-22 1.1E-26 167.7 13.0 108 92-200 1-109 (109)
25 PF14543 TAXi_N: Xylanase inhi 99.9 8.9E-21 1.9E-25 171.9 16.0 136 90-248 1-164 (164)
26 PF14541 TAXi_C: Xylanase inhi 99.8 7.5E-18 1.6E-22 152.5 12.9 153 268-503 1-161 (161)
27 cd05483 retropepsin_like_bacte 98.1 1.4E-05 3E-10 65.1 7.2 92 89-202 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 97.4 0.00091 2E-08 57.2 9.0 101 80-202 2-103 (121)
29 PF13650 Asp_protease_2: Aspar 96.8 0.0079 1.7E-07 47.9 8.1 88 92-201 1-89 (90)
30 PF11925 DUF3443: Protein of u 96.5 0.035 7.5E-07 55.5 11.9 197 90-306 24-272 (370)
31 cd05479 RP_DDI RP_DDI; retrope 95.7 0.065 1.4E-06 45.9 8.7 91 86-201 13-106 (124)
32 COG3577 Predicted aspartyl pro 95.6 0.13 2.7E-06 47.3 10.0 92 75-181 91-183 (215)
33 PF05184 SapB_1: Saposin-like 95.4 0.0086 1.9E-07 39.9 1.6 38 377-414 2-39 (39)
34 cd05484 retropepsin_like_LTR_2 94.5 0.2 4.4E-06 40.2 7.7 75 90-182 1-78 (91)
35 cd05479 RP_DDI RP_DDI; retrope 93.3 0.45 9.8E-06 40.7 8.0 25 477-501 100-124 (124)
36 cd06095 RP_RTVL_H_like Retrope 93.0 0.51 1.1E-05 37.5 7.3 81 93-202 2-84 (86)
37 PF08284 RVP_2: Retroviral asp 92.5 0.3 6.5E-06 42.5 5.8 27 477-503 105-131 (135)
38 TIGR02281 clan_AA_DTGA clan AA 92.3 4 8.8E-05 34.7 12.4 37 265-311 8-44 (121)
39 TIGR03698 clan_AA_DTGF clan AA 87.6 3 6.4E-05 34.7 7.6 23 477-499 85-107 (107)
40 PF13975 gag-asp_proteas: gag- 85.7 1.3 2.7E-05 33.9 4.0 33 87-121 6-38 (72)
41 PF13650 Asp_protease_2: Aspar 77.7 3.1 6.8E-05 32.5 3.8 29 276-311 3-31 (90)
42 PF13975 gag-asp_proteas: gag- 76.1 4.9 0.00011 30.6 4.3 29 276-311 13-41 (72)
43 PF00077 RVP: Retroviral aspar 75.5 3.5 7.5E-05 33.4 3.5 29 91-121 7-35 (100)
44 PF12384 Peptidase_A2B: Ty3 tr 72.4 7.9 0.00017 34.5 5.0 24 289-312 45-68 (177)
45 cd05484 retropepsin_like_LTR_2 72.0 5.5 0.00012 31.7 3.9 30 275-311 4-33 (91)
46 PF09668 Asp_protease: Asparty 69.9 15 0.00031 31.5 6.1 91 87-201 22-114 (124)
47 PF07172 GRP: Glycine rich pro 69.1 3.9 8.4E-05 33.2 2.3 24 3-26 1-24 (95)
48 cd05483 retropepsin_like_bacte 68.2 8 0.00017 30.5 4.1 29 276-311 7-35 (96)
49 PF07966 A1_Propeptide: A1 Pro 67.1 3.3 7.2E-05 25.6 1.2 24 30-53 1-24 (29)
50 cd06095 RP_RTVL_H_like Retrope 63.0 9.1 0.0002 30.2 3.4 29 276-311 3-31 (86)
51 cd05482 HIV_retropepsin_like R 61.3 10 0.00022 30.2 3.3 27 93-121 2-28 (87)
52 PF02160 Peptidase_A3: Caulifl 56.2 20 0.00043 33.3 4.7 49 430-501 67-115 (201)
53 smart00741 SapB Saposin (B) Do 48.9 15 0.00033 27.4 2.4 37 378-414 2-38 (76)
54 cd05481 retropepsin_like_LTR_1 46.3 22 0.00048 28.6 3.1 23 290-312 11-33 (93)
55 PF00077 RVP: Retroviral aspar 46.3 20 0.00043 28.9 2.8 27 275-308 9-35 (100)
56 PF09668 Asp_protease: Asparty 44.3 29 0.00062 29.7 3.6 30 275-311 28-57 (124)
57 PF12384 Peptidase_A2B: Ty3 tr 42.1 32 0.00068 30.8 3.5 29 91-119 34-62 (177)
58 PF08284 RVP_2: Retroviral asp 41.8 1.6E+02 0.0035 25.3 8.0 29 88-118 20-48 (135)
59 COG3577 Predicted aspartyl pro 40.0 41 0.00088 31.3 4.0 36 266-311 103-138 (215)
60 COG5550 Predicted aspartyl pro 39.6 18 0.00038 30.7 1.5 22 291-312 28-50 (125)
61 PF03489 SapB_2: Saposin-like 39.2 19 0.00042 22.9 1.4 20 323-342 2-21 (35)
62 TIGR03698 clan_AA_DTGF clan AA 28.9 60 0.0013 26.8 3.1 66 92-173 2-73 (107)
63 PRK15249 fimbrial chaperone pr 28.5 1.4E+02 0.003 29.0 5.9 19 76-94 44-62 (253)
64 TIGR01165 cbiN cobalt transpor 24.1 76 0.0016 25.4 2.6 25 1-25 1-25 (91)
65 COG4714 Uncharacterized membra 21.0 86 0.0019 29.6 2.7 25 1-25 1-25 (303)
66 cd06094 RP_Saci_like RP_Saci_l 20.6 3.4E+02 0.0074 21.7 5.7 22 101-122 8-29 (89)
No 1
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=9e-65 Score=529.91 Aligned_cols=324 Identities=40% Similarity=0.755 Sum_probs=286.8
Q ss_pred CccEEeceeccCceEEEEEEecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCcccCCCCCCcee--CCc---eEEE
Q 010645 76 DADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKK--NGK---SADI 150 (505)
Q Consensus 76 ~~~~~pl~n~~~~~Y~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~--~~~---~~~~ 150 (505)
.....||.|+.|.+|+++|+||||||+|.|++||||+++||++..|. ...|..++.|+|++|+||+. .+. .+.+
T Consensus 107 ~~~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~-~~~C~~~~~yd~s~SSTy~~~~~~~~~~~~~i 185 (482)
T PTZ00165 107 QYLQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECK-SGGCAPHRKFDPKKSSTYTKLKLGDESAETYI 185 (482)
T ss_pred cccceecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcC-cccccccCCCCccccCCcEecCCCCccceEEE
Confidence 34679999999999999999999999999999999999999999997 56799999999999999998 554 5789
Q ss_pred EeccceEEEEEEEEEEEECceeecCcEEEEEEeeCCccccccccceEEecccCccc---CCCCCcHHHHHHHcCCCCCCE
Q 010645 151 HYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEIS---VGKAVPVWYNMVNQGLVNEPV 227 (505)
Q Consensus 151 ~Y~~gs~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s---~~~~~~~~~~L~~qg~i~~~~ 227 (505)
.|++|++.|.+++|+|++|+..+++|.||+++..++..|....+|||||||++..+ .....|++++|++||+|++++
T Consensus 186 ~YGsGs~~G~l~~DtV~ig~l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~ 265 (482)
T PTZ00165 186 QYGTGECVLALGKDTVKIGGLKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNI 265 (482)
T ss_pred EeCCCcEEEEEEEEEEEECCEEEccEEEEEEEeccccccccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccce
Confidence 99999999999999999999999999999999876656777789999999998773 344688999999999999999
Q ss_pred EEEEecCCCCCCCCcEEEECCccCCCc--ccceEEEecCCcceeEEEeceEEECCeEeeeecCCceEEEcCCCcCccccH
Q 010645 228 FSFWFNRNADEEEGGEIVFGGMDPDHY--KGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPT 305 (505)
Q Consensus 228 FSl~l~~~~~~~~~G~L~fGgid~~~~--~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~ 305 (505)
||+||.+.. ..+|+|+|||+|+.++ .|++.|+|+...+||.|.+++|+++++.+..+.....|++||||+++++|.
T Consensus 266 FS~yL~~~~--~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~ 343 (482)
T PTZ00165 266 FSFYMSKDL--NQPGSISFGSADPKYTLEGHKIWWFPVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPS 343 (482)
T ss_pred EEEEeccCC--CCCCEEEeCCcCHHHcCCCCceEEEEccccceEEEEeCeEEECCEEeeecCCceEEEEcCCCccEeCCH
Confidence 999998653 2379999999999776 578999999999999999999999998877666678999999999999999
Q ss_pred HHHHHHHHHhccccccccchhhhhhchhhHHHHHHhhhccccccCCCCCccccccccccCCCcCCCCCccCcccchhhhH
Q 010645 306 TIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMA 385 (505)
Q Consensus 306 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (505)
+++++|.+++++.
T Consensus 344 ~~~~~i~~~i~~~------------------------------------------------------------------- 356 (482)
T PTZ00165 344 SVINPLLEKIPLE------------------------------------------------------------------- 356 (482)
T ss_pred HHHHHHHHHcCCc-------------------------------------------------------------------
Confidence 9999999887543
Q ss_pred HHHHHhhhhhhhhHHHHhhhhhccccCCCCCCCceEEcCCCCCCCCcEEEEECCE-----EEEeCcccceeeec--CCCC
Q 010645 386 VVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGK-----IFDLTPDQYILKVG--EGDA 458 (505)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~~~-----~~~i~~~~y~~~~~--~~~~ 458 (505)
.+|+....+|+|+|+|+|. +|.|+|++|+++.. ..+.
T Consensus 357 ------------------------------------~~C~~~~~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~~~~~~ 400 (482)
T PTZ00165 357 ------------------------------------EDCSNKDSLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEEQE 400 (482)
T ss_pred ------------------------------------ccccccccCCceEEEECCCCCceEEEEEchHHeeeecccCCCCC
Confidence 2688777899999999864 89999999999742 3345
Q ss_pred cceEeeeEecccCCCCCCceEeChhhhCceEEEEECCCCeEEEEEcC
Q 010645 459 AQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 505 (505)
Q Consensus 459 ~~C~~~i~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfa~a~ 505 (505)
..|+++|+.++.+.+.++.||||++|||+||+|||++++|||||+++
T Consensus 401 ~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~ 447 (482)
T PTZ00165 401 HQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAK 447 (482)
T ss_pred CeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeec
Confidence 68999999888655566789999999999999999999999999974
No 2
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=3.6e-62 Score=493.55 Aligned_cols=324 Identities=55% Similarity=1.036 Sum_probs=284.7
Q ss_pred eccCceEEEEEEecCCCceEEEEecCCCCceeeeCCCCCC-CcccCCCCcccCCCCCCceeCCceEEEEeccceEEEEEE
Q 010645 84 NYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYF-SIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFS 162 (505)
Q Consensus 84 n~~~~~Y~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C~~-~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs~~G~~~ 162 (505)
|+.|.+|+++|.||||+|++.|++||||+++||++..|.. ...|..++.|+|++|+||+..++.+.+.|++|++.|.++
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G~~~ 80 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNGTEFAIQYGSGSLSGYLS 80 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCCcEEEEEECCcEEEEEEe
Confidence 4568999999999999999999999999999999999963 247888899999999999999999999999999999999
Q ss_pred EEEEEECceeecCcEEEEEEeeCCccccccccceEEecccCcccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCCCCCc
Q 010645 163 EDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGG 242 (505)
Q Consensus 163 ~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G 242 (505)
+|+|+||+..++++.||+++..++..+....++||||||++..+.....|++++|++||.|++++||+||.+..+....|
T Consensus 81 ~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G 160 (325)
T cd05490 81 QDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGG 160 (325)
T ss_pred eeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCC
Confidence 99999999999999999998776544555678999999999887767788999999999999999999998754333479
Q ss_pred EEEECCccCCCcccceEEEecCCcceeEEEeceEEECCeEeeeecCCceEEEcCCCcCccccHHHHHHHHHHhccccccc
Q 010645 243 EIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVS 322 (505)
Q Consensus 243 ~L~fGgid~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~~~~~~~~~ 322 (505)
+|+|||+|++++.|++.|+|+....+|.|.+++|+|++... .+.....++|||||+++++|.+++++|.+++++.
T Consensus 161 ~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~-~~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~---- 235 (325)
T cd05490 161 ELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLT-LCKGGCEAIVDTGTSLITGPVEEVRALQKAIGAV---- 235 (325)
T ss_pred EEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeee-ecCCCCEEEECCCCccccCCHHHHHHHHHHhCCc----
Confidence 99999999999999999999998899999999999988643 2345678999999999999999999999987543
Q ss_pred cchhhhhhchhhHHHHHHhhhccccccCCCCCccccccccccCCCcCCCCCccCcccchhhhHHHHHHhhhhhhhhHHHH
Q 010645 323 QECKAVVSQYGEEIINMLLAKIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERI 402 (505)
Q Consensus 323 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (505)
T Consensus 236 -------------------------------------------------------------------------------- 235 (325)
T cd05490 236 -------------------------------------------------------------------------------- 235 (325)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhccccCCCCCCCceEEcCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCcceEeeeEecccCCCCCCceEeCh
Q 010645 403 LNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGD 482 (505)
Q Consensus 403 ~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~~~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~ILG~ 482 (505)
+...+.|.++|+....+|+|+|+|+|+.++|+|++|+++........|+++|+..+.....++.||||+
T Consensus 236 -----------~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd 304 (325)
T cd05490 236 -----------PLIQGEYMIDCEKIPTLPVISFSLGGKVYPLTGEDYILKVSQRGTTICLSGFMGLDIPPPAGPLWILGD 304 (325)
T ss_pred -----------cccCCCEEecccccccCCCEEEEECCEEEEEChHHeEEeccCCCCCEEeeEEEECCCCCCCCceEEECh
Confidence 012356889999888899999999999999999999997654445689999987765444556899999
Q ss_pred hhhCceEEEEECCCCeEEEEE
Q 010645 483 VFMGPYHTVFDYSNMRVGFAE 503 (505)
Q Consensus 483 ~fl~~~y~vfD~~~~~iGfa~ 503 (505)
+|||++|+|||++++|||||+
T Consensus 305 ~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 305 VFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred HhheeeEEEEEcCCcEeeccC
Confidence 999999999999999999996
No 3
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=2.2e-62 Score=492.88 Aligned_cols=317 Identities=85% Similarity=1.458 Sum_probs=283.0
Q ss_pred EeceeccCceEEEEEEecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCcccCCCCCCceeCCceEEEEeccceEEE
Q 010645 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISG 159 (505)
Q Consensus 80 ~pl~n~~~~~Y~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs~~G 159 (505)
+||.|+.+.+|+++|+||||+|++.|+|||||+++||++..|..+..|..++.|+|++|+||+..+..+.+.|++|++.|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G 80 (317)
T cd06098 1 VALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKKNGTSASIQYGTGSISG 80 (317)
T ss_pred CcccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCcccCCCEEEEEcCCceEEE
Confidence 57899999999999999999999999999999999999999965568998999999999999999999999999999999
Q ss_pred EEEEEEEEECceeecCcEEEEEEeeCCccccccccceEEecccCcccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCCC
Q 010645 160 FFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEE 239 (505)
Q Consensus 160 ~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~ 239 (505)
.+++|+|++|+..++++.||+++...+..+....++||||||++..+.....+++++|++||+|++++||+||.+..+..
T Consensus 81 ~~~~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~ 160 (317)
T cd06098 81 FFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEE 160 (317)
T ss_pred EEEeeEEEECCEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCC
Confidence 99999999999999999999998776555666678999999999887767788999999999999999999998754334
Q ss_pred CCcEEEECCccCCCcccceEEEecCCcceeEEEeceEEECCeEeeeecCCceEEEcCCCcCccccHHHHHHHHHHhcccc
Q 010645 240 EGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATG 319 (505)
Q Consensus 240 ~~G~L~fGgid~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~~~~~~ 319 (505)
..|+|+|||+|++++.|++.|+|+...++|.|.+++|+|++..+..+.....++|||||+++++|++++++|.
T Consensus 161 ~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~~~~~i~------- 233 (317)
T cd06098 161 EGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQIN------- 233 (317)
T ss_pred CCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHHHHHhhh-------
Confidence 5799999999999999999999999889999999999999998776666788999999999999998765442
Q ss_pred ccccchhhhhhchhhHHHHHHhhhccccccCCCCCccccccccccCCCcCCCCCccCcccchhhhHHHHHHhhhhhhhhH
Q 010645 320 IVSQECKAVVSQYGEEIINMLLAKIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQ 399 (505)
Q Consensus 320 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (505)
T Consensus 234 -------------------------------------------------------------------------------- 233 (317)
T cd06098 234 -------------------------------------------------------------------------------- 233 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhhccccCCCCCCCceEEcCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCcceEeeeEecccCCCCCCceE
Q 010645 400 ERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWI 479 (505)
Q Consensus 400 ~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~~~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~I 479 (505)
+.++|+....+|+|+|+|+|+.++|+|++|+++..+.....|+++|+..+.....++.||
T Consensus 234 --------------------~~~~C~~~~~~P~i~f~f~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~I 293 (317)
T cd06098 234 --------------------SAVDCNSLSSMPNVSFTIGGKTFELTPEQYILKVGEGAAAQCISGFTALDVPPPRGPLWI 293 (317)
T ss_pred --------------------ccCCccccccCCcEEEEECCEEEEEChHHeEEeecCCCCCEEeceEEECCCCCCCCCeEE
Confidence 235788777899999999999999999999988665555689999987764444456899
Q ss_pred eChhhhCceEEEEECCCCeEEEEE
Q 010645 480 LGDVFMGPYHTVFDYSNMRVGFAE 503 (505)
Q Consensus 480 LG~~fl~~~y~vfD~~~~~iGfa~ 503 (505)
||++|||++|+|||++++|||||+
T Consensus 294 lGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 294 LGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred echHHhcccEEEEeCCCCEEeecC
Confidence 999999999999999999999995
No 4
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.1e-61 Score=488.02 Aligned_cols=316 Identities=49% Similarity=0.931 Sum_probs=280.1
Q ss_pred EEEEEEecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCcccCCCCCCceeCCceEEEEeccceEEEEEEEEEEEEC
Q 010645 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIG 169 (505)
Q Consensus 90 Y~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs~~G~~~~D~v~ig 169 (505)
|+++|+||||+|+++|+|||||+++||++..|. ...|..++.|+|++|+||+..++.+.+.|++|++.|.+++|+|+++
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~~D~v~ig 79 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCT-SQACTKHNRFQPSESSTYVSNGEAFSIQYGTGSLTGIIGIDQVTVE 79 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCC-CcccCccceECCCCCcccccCCcEEEEEeCCcEEEEEeeecEEEEC
Confidence 899999999999999999999999999999996 4579989999999999999999999999999999999999999999
Q ss_pred ceeecCcEEEEEEeeCCccccccccceEEecccCcccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCCCCCcEEEECCc
Q 010645 170 DLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGM 249 (505)
Q Consensus 170 ~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~fGgi 249 (505)
+..++++.||++....+..|....++||||||++..+.....|++++|++||+|++++||+||.+.++....|+|+|||+
T Consensus 80 ~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~ 159 (316)
T cd05486 80 GITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGF 159 (316)
T ss_pred CEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEccc
Confidence 99999999999877665455566789999999998876677889999999999999999999987543345799999999
Q ss_pred cCCCcccceEEEecCCcceeEEEeceEEECCeEeeeecCCceEEEcCCCcCccccHHHHHHHHHHhccccccccchhhhh
Q 010645 250 DPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVV 329 (505)
Q Consensus 250 d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~~~~~~~~~~~~~~~~ 329 (505)
|++++.|++.|+|+.+.++|.|.+++|+|+++.+. ......++|||||+++++|++++++|.+.+++.
T Consensus 160 d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~-~~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~----------- 227 (316)
T cd05486 160 DTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIF-CSDGCQAIVDTGTSLITGPSGDIKQLQNYIGAT----------- 227 (316)
T ss_pred CHHHcccceEEEECCCceEEEEEeeEEEEecceEe-cCCCCEEEECCCcchhhcCHHHHHHHHHHhCCc-----------
Confidence 99999999999999999999999999999998764 345678999999999999999999998887543
Q ss_pred hchhhHHHHHHhhhccccccCCCCCccccccccccCCCcCCCCCccCcccchhhhHHHHHHhhhhhhhhHHHHhhhhhcc
Q 010645 330 SQYGEEIINMLLAKIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNEL 409 (505)
Q Consensus 330 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (505)
T Consensus 228 -------------------------------------------------------------------------------- 227 (316)
T cd05486 228 -------------------------------------------------------------------------------- 227 (316)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCceEEcCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCcceEeeeEecccCCCCCCceEeChhhhCceE
Q 010645 410 CDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYH 489 (505)
Q Consensus 410 c~~~~~~~~~~~~~C~~~~~~P~l~f~~~~~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~ILG~~fl~~~y 489 (505)
...+.|.++|+....+|+|+|+|+|+.++|+|++|++.....+...|+++|+..+..+..++.||||++|||++|
T Consensus 228 -----~~~~~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y 302 (316)
T cd05486 228 -----ATDGEYGVDCSTLSLMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYY 302 (316)
T ss_pred -----ccCCcEEEeccccccCCCEEEEECCEEEEeCHHHeEEecccCCCCEEeeEEEECCCCCCCCCeEEEchHHhcceE
Confidence 113568899998788999999999999999999999875333456899999877654445568999999999999
Q ss_pred EEEECCCCeEEEEE
Q 010645 490 TVFDYSNMRVGFAE 503 (505)
Q Consensus 490 ~vfD~~~~~iGfa~ 503 (505)
+|||++++|||||+
T Consensus 303 ~vfD~~~~~IGfA~ 316 (316)
T cd05486 303 SVFDRGNNRVGFAP 316 (316)
T ss_pred EEEeCCCCEeeccC
Confidence 99999999999996
No 5
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=3.2e-61 Score=486.54 Aligned_cols=325 Identities=46% Similarity=0.922 Sum_probs=286.7
Q ss_pred ceeccCceEEEEEEecCCCceEEEEecCCCCceeeeCCCCCC-CcccCCCCcccCCCCCCceeCCceEEEEeccceEEEE
Q 010645 82 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYF-SIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGF 160 (505)
Q Consensus 82 l~n~~~~~Y~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C~~-~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs~~G~ 160 (505)
|.|+.+..|+++|+||||+|+++|++||||+++||++..|.. ...|..++.|+|++|+||+..++.+++.|++|++.|.
T Consensus 1 ~~~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~~~~~~~Yg~g~~~G~ 80 (326)
T cd05487 1 LTNYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENGTEFTIHYASGTVKGF 80 (326)
T ss_pred CcccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECCEEEEEEeCCceEEEE
Confidence 567889999999999999999999999999999999999963 2478889999999999999999999999999999999
Q ss_pred EEEEEEEECceeecCcEEEEEEeeCCccccccccceEEecccCcccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCCCC
Q 010645 161 FSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEE 240 (505)
Q Consensus 161 ~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~ 240 (505)
+++|+|++|+..+. +.||++.......+....++||||||++..+.....|++++|++||.|++++||+||.+.++...
T Consensus 81 ~~~D~v~~g~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~ 159 (326)
T cd05487 81 LSQDIVTVGGIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSL 159 (326)
T ss_pred EeeeEEEECCEEee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCC
Confidence 99999999998884 88999987654445556789999999988776677889999999999999999999987643345
Q ss_pred CcEEEECCccCCCcccceEEEecCCcceeEEEeceEEECCeEeeeecCCceEEEcCCCcCccccHHHHHHHHHHhccccc
Q 010645 241 GGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGI 320 (505)
Q Consensus 241 ~G~L~fGgid~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~~~~~~~ 320 (505)
.|+|+|||+|+++|.|++.|+|+...++|.|.++++++++..+. ...+..++|||||+++++|.+++++|++++++..
T Consensus 160 ~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~-~~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~- 237 (326)
T cd05487 160 GGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLL-CEDGCTAVVDTGASFISGPTSSISKLMEALGAKE- 237 (326)
T ss_pred CcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEe-cCCCCEEEECCCccchhCcHHHHHHHHHHhCCcc-
Confidence 79999999999999999999999989999999999999998764 3456789999999999999999999999886550
Q ss_pred cccchhhhhhchhhHHHHHHhhhccccccCCCCCccccccccccCCCcCCCCCccCcccchhhhHHHHHHhhhhhhhhHH
Q 010645 321 VSQECKAVVSQYGEEIINMLLAKIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQE 400 (505)
Q Consensus 321 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (505)
T Consensus 238 -------------------------------------------------------------------------------- 237 (326)
T cd05487 238 -------------------------------------------------------------------------------- 237 (326)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhccccCCCCCCCceEEcCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCcceEeeeEecccCCCCCCceEe
Q 010645 401 RILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWIL 480 (505)
Q Consensus 401 ~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~~~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~IL 480 (505)
..+.|.+||+....+|+|+|+|++.+++|++++|+++..+.....|+++|+..+..++.++.|||
T Consensus 238 ---------------~~~~y~~~C~~~~~~P~i~f~fgg~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~il 302 (326)
T cd05487 238 ---------------RLGDYVVKCNEVPTLPDISFHLGGKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIPPPTGPLWVL 302 (326)
T ss_pred ---------------cCCCEEEeccccCCCCCEEEEECCEEEEeCHHHhEEeccCCCCCEEEEEEEeCCCCCCCCCeEEE
Confidence 13468899998888999999999999999999999986655567899999987654445568999
Q ss_pred ChhhhCceEEEEECCCCeEEEEEc
Q 010645 481 GDVFMGPYHTVFDYSNMRVGFAEA 504 (505)
Q Consensus 481 G~~fl~~~y~vfD~~~~~iGfa~a 504 (505)
|++|||++|+|||++++|||||+|
T Consensus 303 G~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 303 GATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred ehHHhhccEEEEeCCCCEEeeeeC
Confidence 999999999999999999999986
No 6
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.2e-60 Score=482.57 Aligned_cols=327 Identities=58% Similarity=1.045 Sum_probs=288.9
Q ss_pred EeceeccCceEEEEEEecCCCceEEEEecCCCCceeeeCCCCCC-CcccCCCCcccCCCCCCceeCCceEEEEeccceEE
Q 010645 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYF-SIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAIS 158 (505)
Q Consensus 80 ~pl~n~~~~~Y~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C~~-~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs~~ 158 (505)
.||.|+.+.+|+++|+||||+|++.|++||||+++||+|..|.. ...|..++.|+|++|+|++..++.|.+.|++|++.
T Consensus 2 ~~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~~~~~i~Y~~g~~~ 81 (329)
T cd05485 2 EPLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNGTEFAIQYGSGSLS 81 (329)
T ss_pred ccceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECCeEEEEEECCceEE
Confidence 47899999999999999999999999999999999999999963 23688888999999999999999999999999999
Q ss_pred EEEEEEEEEECceeecCcEEEEEEeeCCccccccccceEEecccCcccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCC
Q 010645 159 GFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADE 238 (505)
Q Consensus 159 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~ 238 (505)
|.+++|++++|+..++++.||++....+..+.....+||||||++..+.....|++.+|++||+|++++||+||.+..+.
T Consensus 82 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~ 161 (329)
T cd05485 82 GFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSA 161 (329)
T ss_pred EEEecCcEEECCEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCC
Confidence 99999999999999999999999876654455567899999999988766777899999999999999999999875443
Q ss_pred CCCcEEEECCccCCCcccceEEEecCCcceeEEEeceEEECCeEeeeecCCceEEEcCCCcCccccHHHHHHHHHHhccc
Q 010645 239 EEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318 (505)
Q Consensus 239 ~~~G~L~fGgid~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~~~~~ 318 (505)
...|+|+|||+|++++.|+++|+|+...++|.|.++++.+++..+. .....++|||||+++++|++++++|.+++++.
T Consensus 162 ~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~~--~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~ 239 (329)
T cd05485 162 KEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEFC--SGGCQAIADTGTSLIAGPVDEIEKLNNAIGAK 239 (329)
T ss_pred CCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeeec--CCCcEEEEccCCcceeCCHHHHHHHHHHhCCc
Confidence 4579999999999999999999999999999999999999998763 45678999999999999999999999887654
Q ss_pred cccccchhhhhhchhhHHHHHHhhhccccccCCCCCccccccccccCCCcCCCCCccCcccchhhhHHHHHHhhhhhhhh
Q 010645 319 GIVSQECKAVVSQYGEEIINMLLAKIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQT 398 (505)
Q Consensus 319 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (505)
.
T Consensus 240 ~------------------------------------------------------------------------------- 240 (329)
T cd05485 240 P------------------------------------------------------------------------------- 240 (329)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHhhhhhccccCCCCCCCceEEcCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCcceEeeeEecccCCCCCCce
Q 010645 399 QERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLW 478 (505)
Q Consensus 399 ~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~~~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~ 478 (505)
...+.|.++|+....+|+|+|+|+++++.|+|++|+++....+...|+++|+..+..+..++.|
T Consensus 241 ----------------~~~~~~~~~C~~~~~~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ 304 (329)
T cd05485 241 ----------------IIGGEYMVNCSAIPSLPDITFVLGGKSFSLTGKDYVLKVTQMGQTICLSGFMGIDIPPPAGPLW 304 (329)
T ss_pred ----------------ccCCcEEEeccccccCCcEEEEECCEEeEEChHHeEEEecCCCCCEEeeeEEECcCCCCCCCeE
Confidence 0124688999987789999999999999999999999876555578999898766444455689
Q ss_pred EeChhhhCceEEEEECCCCeEEEEE
Q 010645 479 ILGDVFMGPYHTVFDYSNMRVGFAE 503 (505)
Q Consensus 479 ILG~~fl~~~y~vfD~~~~~iGfa~ 503 (505)
|||++|||++|+|||++++|||||+
T Consensus 305 IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 305 ILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred EEchHHhccceEEEeCCCCEEeecC
Confidence 9999999999999999999999984
No 7
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=2.9e-60 Score=477.91 Aligned_cols=316 Identities=47% Similarity=0.895 Sum_probs=280.8
Q ss_pred eceeccCceEEEEEEecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCcccCCCCCCceeCCceEEEEeccceEEEE
Q 010645 81 ALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGF 160 (505)
Q Consensus 81 pl~n~~~~~Y~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs~~G~ 160 (505)
||.|+.+.+|+++|+||||+|++.|+|||||+++||+|..|. ...|..++.|+|++|+|++..++.+.+.|++|++.|.
T Consensus 2 ~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~-~~~c~~~~~f~~~~Sst~~~~~~~~~~~yg~gs~~G~ 80 (317)
T cd05478 2 PLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCS-SQACSNHNRFNPRQSSTYQSTGQPLSIQYGTGSMTGI 80 (317)
T ss_pred ccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCC-cccccccCcCCCCCCcceeeCCcEEEEEECCceEEEE
Confidence 789999999999999999999999999999999999999996 4578888999999999999999999999999999999
Q ss_pred EEEEEEEECceeecCcEEEEEEeeCCccccccccceEEecccCcccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCCCC
Q 010645 161 FSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEE 240 (505)
Q Consensus 161 ~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~ 240 (505)
+++|+|++|+..++++.||++....+..+....++||||||++..+..+..|++++|++||+|++++||+||.+..+ .
T Consensus 81 ~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~--~ 158 (317)
T cd05478 81 LGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSNGQ--Q 158 (317)
T ss_pred EeeeEEEECCEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCCC--C
Confidence 99999999999999999999987654323334579999999988776677889999999999999999999987632 3
Q ss_pred CcEEEECCccCCCcccceEEEecCCcceeEEEeceEEECCeEeeeecCCceEEEcCCCcCccccHHHHHHHHHHhccccc
Q 010645 241 GGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGI 320 (505)
Q Consensus 241 ~G~L~fGgid~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~~~~~~~ 320 (505)
.|+|+|||+|++++.|++.|+|+....+|.|.++++.|+++.+. ...+..++|||||+++++|++++++|.+++++..
T Consensus 159 ~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~-~~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~- 236 (317)
T cd05478 159 GSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVA-CSGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQ- 236 (317)
T ss_pred CeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEc-cCCCCEEEECCCchhhhCCHHHHHHHHHHhCCcc-
Confidence 69999999999999999999999989999999999999999875 2345789999999999999999999999885540
Q ss_pred cccchhhhhhchhhHHHHHHhhhccccccCCCCCccccccccccCCCcCCCCCccCcccchhhhHHHHHHhhhhhhhhHH
Q 010645 321 VSQECKAVVSQYGEEIINMLLAKIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQE 400 (505)
Q Consensus 321 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (505)
T Consensus 237 -------------------------------------------------------------------------------- 236 (317)
T cd05478 237 -------------------------------------------------------------------------------- 236 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhccccCCCCCCCceEEcCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCcceEeeeEecccCCCCCCceEe
Q 010645 401 RILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWIL 480 (505)
Q Consensus 401 ~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~~~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~IL 480 (505)
...+.|.++|+....+|.|+|+|+|++++|+|++|+.+. ...|++.|+..+ ..+.|||
T Consensus 237 --------------~~~~~~~~~C~~~~~~P~~~f~f~g~~~~i~~~~y~~~~----~~~C~~~~~~~~----~~~~~Il 294 (317)
T cd05478 237 --------------NQNGEMVVNCSSISSMPDVVFTINGVQYPLPPSAYILQD----QGSCTSGFQSMG----LGELWIL 294 (317)
T ss_pred --------------ccCCcEEeCCcCcccCCcEEEEECCEEEEECHHHheecC----CCEEeEEEEeCC----CCCeEEe
Confidence 113568899998888999999999999999999999864 368999888542 2357999
Q ss_pred ChhhhCceEEEEECCCCeEEEEE
Q 010645 481 GDVFMGPYHTVFDYSNMRVGFAE 503 (505)
Q Consensus 481 G~~fl~~~y~vfD~~~~~iGfa~ 503 (505)
|++|||++|+|||++++|||||+
T Consensus 295 G~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 295 GDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred chHHhcceEEEEeCCCCEEeecC
Confidence 99999999999999999999996
No 8
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1.3e-59 Score=473.43 Aligned_cols=317 Identities=45% Similarity=0.884 Sum_probs=280.1
Q ss_pred CceEEEEEEecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCcccCCCCCCceeCCceEEEEeccceEEEEEEEEEE
Q 010645 87 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHV 166 (505)
Q Consensus 87 ~~~Y~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs~~G~~~~D~v 166 (505)
|..|+++|+||||||++.|++||||+++||++..|. ...|..++.|+|++|+||+..++.+++.|++|++.|.+++|++
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~D~i 79 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQ-SQACTNHTKFNPSQSSTYSTNGETFSLQYGSGSLTGIFGYDTV 79 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCC-CccccccCCCCcccCCCceECCcEEEEEECCcEEEEEEEeeEE
Confidence 467999999999999999999999999999999997 4579989999999999999999999999999999999999999
Q ss_pred EECceeecCcEEEEEEeeCCccccccccceEEecccCcccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCCCCCcEEEE
Q 010645 167 KIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVF 246 (505)
Q Consensus 167 ~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~f 246 (505)
++|+..++++.||++....+..+.....+||||||++..+....++++++|+++|.|++++||+||.+.. ....|.|+|
T Consensus 80 ~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~-~~~~g~l~f 158 (318)
T cd05477 80 TVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQQ-GQQGGELVF 158 (318)
T ss_pred EECCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEEEEcCCC-CCCCCEEEE
Confidence 9999999999999998765544444567999999998887777788999999999999999999998752 223699999
Q ss_pred CCccCCCcccceEEEecCCcceeEEEeceEEECCeEeeeecCCceEEEcCCCcCccccHHHHHHHHHHhccccccccchh
Q 010645 247 GGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECK 326 (505)
Q Consensus 247 Ggid~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~~~~~~~~~~~~~ 326 (505)
||+|++++.|++.|+|+...++|.|.+++|.|++..+..+..+..++|||||+++++|++++++|++.+++..
T Consensus 159 Gg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~------- 231 (318)
T cd05477 159 GGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQ------- 231 (318)
T ss_pred cccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeECCCCccEECCHHHHHHHHHHhCCcc-------
Confidence 9999999999999999999999999999999999987655566789999999999999999999999886550
Q ss_pred hhhhchhhHHHHHHhhhccccccCCCCCccccccccccCCCcCCCCCccCcccchhhhHHHHHHhhhhhhhhHHHHhhhh
Q 010645 327 AVVSQYGEEIINMLLAKIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYV 406 (505)
Q Consensus 327 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (505)
T Consensus 232 -------------------------------------------------------------------------------- 231 (318)
T cd05477 232 -------------------------------------------------------------------------------- 231 (318)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccccCCCCCCCceEEcCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCcceEeeeEecccCCCC-CCceEeChhhh
Q 010645 407 NELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPR-GPLWILGDVFM 485 (505)
Q Consensus 407 ~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~~~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~-~~~~ILG~~fl 485 (505)
...+.|.+||+....+|+|+|+|+++++.|++++|+... ...|+++|+..+.+... .+.||||++||
T Consensus 232 --------~~~~~~~~~C~~~~~~p~l~~~f~g~~~~v~~~~y~~~~----~~~C~~~i~~~~~~~~~~~~~~ilG~~fl 299 (318)
T cd05477 232 --------DQYGQYVVNCNNIQNLPTLTFTINGVSFPLPPSAYILQN----NGYCTVGIEPTYLPSQNGQPLWILGDVFL 299 (318)
T ss_pred --------ccCCCEEEeCCccccCCcEEEEECCEEEEECHHHeEecC----CCeEEEEEEecccCCCCCCceEEEcHHHh
Confidence 123568899998888999999999999999999999863 35899888765433222 24799999999
Q ss_pred CceEEEEECCCCeEEEEEc
Q 010645 486 GPYHTVFDYSNMRVGFAEA 504 (505)
Q Consensus 486 ~~~y~vfD~~~~~iGfa~a 504 (505)
|++|++||++++|||||+|
T Consensus 300 ~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 300 RQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred hheEEEEeCCCCEEeeeeC
Confidence 9999999999999999986
No 9
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=9.4e-60 Score=474.62 Aligned_cols=320 Identities=50% Similarity=0.915 Sum_probs=283.2
Q ss_pred EeceeccCceEEEEEEecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCcccCCCCCCceeCCceEEEEeccceEEE
Q 010645 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISG 159 (505)
Q Consensus 80 ~pl~n~~~~~Y~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs~~G 159 (505)
+||.|+.+..|+++|+||||+|++.|++||||+++||+|..|. +..|..++.|+|++|+|++..++.+.+.|++|++.|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~-~~~C~~~~~y~~~~Sst~~~~~~~~~~~y~~g~~~G 79 (320)
T cd05488 1 VPLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCG-SIACFLHSKYDSSASSTYKANGTEFKIQYGSGSLEG 79 (320)
T ss_pred CcccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCC-CcccCCcceECCCCCcceeeCCCEEEEEECCceEEE
Confidence 5889999999999999999999999999999999999999996 457988899999999999999999999999999999
Q ss_pred EEEEEEEEECceeecCcEEEEEEeeCCccccccccceEEecccCcccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCCC
Q 010645 160 FFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEE 239 (505)
Q Consensus 160 ~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~ 239 (505)
.+++|++++++..++++.|+++....+..+....++||||||++..+.....+.+.+|++||+|++++||+||.+.. .
T Consensus 80 ~~~~D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~--~ 157 (320)
T cd05488 80 FVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSE--E 157 (320)
T ss_pred EEEEeEEEECCEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecCCC--C
Confidence 99999999999999999999998765544555578999999998877666678889999999999999999998753 2
Q ss_pred CCcEEEECCccCCCcccceEEEecCCcceeEEEeceEEECCeEeeeecCCceEEEcCCCcCccccHHHHHHHHHHhcccc
Q 010645 240 EGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATG 319 (505)
Q Consensus 240 ~~G~L~fGgid~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~~~~~~ 319 (505)
..|.|+|||+|++++.|++.|+|+...++|.|.+++|++++..+.. ....++|||||+++++|++++++|.+++++..
T Consensus 158 ~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~--~~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~ 235 (320)
T cd05488 158 DGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELEL--ENTGAAIDTGTSLIALPSDLAEMLNAEIGAKK 235 (320)
T ss_pred CCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEecc--CCCeEEEcCCcccccCCHHHHHHHHHHhCCcc
Confidence 3799999999999999999999999889999999999999987643 35689999999999999999999998886540
Q ss_pred ccccchhhhhhchhhHHHHHHhhhccccccCCCCCccccccccccCCCcCCCCCccCcccchhhhHHHHHHhhhhhhhhH
Q 010645 320 IVSQECKAVVSQYGEEIINMLLAKIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQ 399 (505)
Q Consensus 320 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (505)
T Consensus 236 -------------------------------------------------------------------------------- 235 (320)
T cd05488 236 -------------------------------------------------------------------------------- 235 (320)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhhccccCCCCCCCceEEcCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCcceEeeeEecccCCCCCCceE
Q 010645 400 ERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWI 479 (505)
Q Consensus 400 ~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~~~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~I 479 (505)
...+.|.+||+....+|+|+|+|+|+++.|+|++|+++. .+.|++.+...+.+...++.||
T Consensus 236 ---------------~~~~~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~----~g~C~~~~~~~~~~~~~~~~~i 296 (320)
T cd05488 236 ---------------SWNGQYTVDCSKVDSLPDLTFNFDGYNFTLGPFDYTLEV----SGSCISAFTGMDFPEPVGPLAI 296 (320)
T ss_pred ---------------ccCCcEEeeccccccCCCEEEEECCEEEEECHHHheecC----CCeEEEEEEECcCCCCCCCeEE
Confidence 113568899998778999999999999999999999853 2479999987654333345799
Q ss_pred eChhhhCceEEEEECCCCeEEEEE
Q 010645 480 LGDVFMGPYHTVFDYSNMRVGFAE 503 (505)
Q Consensus 480 LG~~fl~~~y~vfD~~~~~iGfa~ 503 (505)
||++|||++|+|||++++|||||+
T Consensus 297 lG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 297 VGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred EchHHhhheEEEEeCCCCEEeecC
Confidence 999999999999999999999995
No 10
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=4.4e-59 Score=483.59 Aligned_cols=324 Identities=35% Similarity=0.657 Sum_probs=279.9
Q ss_pred CCccEEeceeccCceEEEEEEecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCcccCCCCCCceeCCceEEEEecc
Q 010645 75 GDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGT 154 (505)
Q Consensus 75 ~~~~~~pl~n~~~~~Y~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~ 154 (505)
.....+||.|+.+.+|+++|+||||||++.|++||||+++||+|..|. ...|..++.|+|++|+||+..++.+++.|++
T Consensus 125 ~~~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~-~~~C~~~~~yd~s~SsT~~~~~~~f~i~Yg~ 203 (453)
T PTZ00147 125 SEFDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCT-TEGCETKNLYDSSKSKTYEKDGTKVEMNYVS 203 (453)
T ss_pred CCCCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCC-cccccCCCccCCccCcceEECCCEEEEEeCC
Confidence 356789999999999999999999999999999999999999999996 4579989999999999999999999999999
Q ss_pred ceEEEEEEEEEEEECceeecCcEEEEEEeeCCc--cccccccceEEecccCcccCCCCCcHHHHHHHcCCCCCCEEEEEe
Q 010645 155 GAISGFFSEDHVKIGDLVVKDQEFIEATREPSL--TFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWF 232 (505)
Q Consensus 155 gs~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~--~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l 232 (505)
|++.|.+++|+|++|+..++ ..|+++....+. .+....++||||||++..+.....|++.+|++||.|++++||+||
T Consensus 204 GsvsG~~~~DtVtiG~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L 282 (453)
T PTZ00147 204 GTVSGFFSKDLVTIGNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYL 282 (453)
T ss_pred CCEEEEEEEEEEEECCEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCCCccEEEEEe
Confidence 99999999999999999988 578887755432 233457899999999988777778899999999999999999999
Q ss_pred cCCCCCCCCcEEEECCccCCCcccceEEEecCCcceeEEEeceEEECCeEeeeecCCceEEEcCCCcCccccHHHHHHHH
Q 010645 233 NRNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVN 312 (505)
Q Consensus 233 ~~~~~~~~~G~L~fGgid~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~ 312 (505)
.+.. ...|.|+|||+|+++|.|++.|+|+....+|.|.++ +.+++.. .....++|||||+++++|++++++|.
T Consensus 283 ~~~~--~~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~-~~vg~~~----~~~~~aIiDSGTsli~lP~~~~~ai~ 355 (453)
T PTZ00147 283 PPED--KHKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLD-VHFGNVS----SEKANVIVDSGTSVITVPTEFLNKFV 355 (453)
T ss_pred cCCC--CCCeEEEECCcChhhcCCceEEEEcCCCceEEEEEE-EEECCEe----cCceeEEECCCCchhcCCHHHHHHHH
Confidence 8643 237999999999999999999999998899999998 4777643 24578999999999999999999999
Q ss_pred HHhccccccccchhhhhhchhhHHHHHHhhhccccccCCCCCccccccccccCCCcCCCCCccCcccchhhhHHHHHHhh
Q 010645 313 HAIGATGIVSQECKAVVSQYGEEIINMLLAKIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQ 392 (505)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (505)
+++++..
T Consensus 356 ~~l~~~~------------------------------------------------------------------------- 362 (453)
T PTZ00147 356 ESLDVFK------------------------------------------------------------------------- 362 (453)
T ss_pred HHhCCee-------------------------------------------------------------------------
Confidence 9885430
Q ss_pred hhhhhhHHHHhhhhhccccCCCCCCCceEEcCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCcceEeeeEecccCC
Q 010645 393 LKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAP 472 (505)
Q Consensus 393 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~~~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~ 472 (505)
....+.|.++|+. ..+|+|+|.|+|..++|+|++|+.+..+.....|.++|++.+.
T Consensus 363 ---------------------~~~~~~y~~~C~~-~~lP~~~f~f~g~~~~L~p~~yi~~~~~~~~~~C~~~i~~~~~-- 418 (453)
T PTZ00147 363 ---------------------VPFLPLYVTTCNN-TKLPTLEFRSPNKVYTLEPEYYLQPIEDIGSALCMLNIIPIDL-- 418 (453)
T ss_pred ---------------------cCCCCeEEEeCCC-CCCCeEEEEECCEEEEECHHHheeccccCCCcEEEEEEEECCC--
Confidence 0113457889986 5789999999999999999999986554445689998886542
Q ss_pred CCCCceEeChhhhCceEEEEECCCCeEEEEEcC
Q 010645 473 PRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 505 (505)
Q Consensus 473 ~~~~~~ILG~~fl~~~y~vfD~~~~~iGfa~a~ 505 (505)
..+.||||++|||++|+|||++++|||||+|+
T Consensus 419 -~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 419 -EKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred -CCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 23579999999999999999999999999985
No 11
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=2.9e-58 Score=476.48 Aligned_cols=323 Identities=33% Similarity=0.670 Sum_probs=277.3
Q ss_pred CccEEeceeccCceEEEEEEecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCcccCCCCCCceeCCceEEEEeccc
Q 010645 76 DADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG 155 (505)
Q Consensus 76 ~~~~~pl~n~~~~~Y~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~g 155 (505)
....+||.|+.+.+|+++|+||||+|++.|+|||||+++||++..|. ...|..++.|+|++|+|++..++.+.+.|++|
T Consensus 125 ~~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~-~~~C~~~~~yd~s~SsT~~~~~~~~~i~YG~G 203 (450)
T PTZ00013 125 ENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCD-SIGCSIKNLYDSSKSKSYEKDGTKVDITYGSG 203 (450)
T ss_pred CCCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCC-ccccccCCCccCccCcccccCCcEEEEEECCc
Confidence 56789999999999999999999999999999999999999999996 45799899999999999999999999999999
Q ss_pred eEEEEEEEEEEEECceeecCcEEEEEEeeCC--ccccccccceEEecccCcccCCCCCcHHHHHHHcCCCCCCEEEEEec
Q 010645 156 AISGFFSEDHVKIGDLVVKDQEFIEATREPS--LTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFN 233 (505)
Q Consensus 156 s~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~--~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~ 233 (505)
++.|.+++|+|++|+.+++ ..|+++..... ..+....++||||||++..+.....|++++|++||.|++++||+||+
T Consensus 204 sv~G~~~~Dtv~iG~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~ 282 (450)
T PTZ00013 204 TVKGFFSKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLP 282 (450)
T ss_pred eEEEEEEEEEEEECCEEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCcCCcEEEEEec
Confidence 9999999999999999987 57887765432 22344578999999999887667788999999999999999999998
Q ss_pred CCCCCCCCcEEEECCccCCCcccceEEEecCCcceeEEEeceEEECCeEeeeecCCceEEEcCCCcCccccHHHHHHHHH
Q 010645 234 RNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNH 313 (505)
Q Consensus 234 ~~~~~~~~G~L~fGgid~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~ 313 (505)
+.. ...|+|+|||+|+++|.|++.|+|+....+|.|.++ +.++.... ....++|||||+++++|+++++++.+
T Consensus 283 ~~~--~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~-v~~G~~~~----~~~~aIlDSGTSli~lP~~~~~~i~~ 355 (450)
T PTZ00013 283 VHD--VHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM----QKANVIVDSGTTTITAPSEFLNKFFA 355 (450)
T ss_pred CCC--CCCCEEEECCcCccccccceEEEEcCcCceEEEEEE-EEECceec----cccceEECCCCccccCCHHHHHHHHH
Confidence 642 237999999999999999999999998899999998 66664432 35679999999999999999999998
Q ss_pred HhccccccccchhhhhhchhhHHHHHHhhhccccccCCCCCccccccccccCCCcCCCCCccCcccchhhhHHHHHHhhh
Q 010645 314 AIGATGIVSQECKAVVSQYGEEIINMLLAKIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQL 393 (505)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (505)
++++..
T Consensus 356 ~l~~~~-------------------------------------------------------------------------- 361 (450)
T PTZ00013 356 NLNVIK-------------------------------------------------------------------------- 361 (450)
T ss_pred HhCCee--------------------------------------------------------------------------
Confidence 875540
Q ss_pred hhhhhHHHHhhhhhccccCCCCCCCceEEcCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCcceEeeeEecccCCC
Q 010645 394 KQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPP 473 (505)
Q Consensus 394 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~~~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~ 473 (505)
....+.|.++|+. ..+|+|+|.|+|.+++|+|++|+.+....+...|++++.+.+.
T Consensus 362 --------------------~~~~~~y~~~C~~-~~lP~i~F~~~g~~~~L~p~~Yi~~~~~~~~~~C~~~i~~~~~--- 417 (450)
T PTZ00013 362 --------------------VPFLPFYVTTCDN-KEMPTLEFKSANNTYTLEPEYYMNPLLDVDDTLCMITMLPVDI--- 417 (450)
T ss_pred --------------------cCCCCeEEeecCC-CCCCeEEEEECCEEEEECHHHheehhccCCCCeeEEEEEECCC---
Confidence 0113468889985 5789999999999999999999976443334689998876542
Q ss_pred CCCceEeChhhhCceEEEEECCCCeEEEEEcC
Q 010645 474 RGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 505 (505)
Q Consensus 474 ~~~~~ILG~~fl~~~y~vfD~~~~~iGfa~a~ 505 (505)
.++.||||++|||++|+|||++++|||||+++
T Consensus 418 ~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 418 DDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred CCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 23579999999999999999999999999985
No 12
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=1.9e-55 Score=442.88 Aligned_cols=316 Identities=39% Similarity=0.743 Sum_probs=279.3
Q ss_pred eEEEEEEecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCcccCCCCCCceeCCceEEEEeccceEEEEEEEEEEEE
Q 010645 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKI 168 (505)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs~~G~~~~D~v~i 168 (505)
+|+++|+||||+|+++|++||||+++||++..|..+..|.....|++++|+|++..++.+.+.|++|++.|.+++|+|+|
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~~~~~~~y~~g~~~G~~~~D~v~i 80 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQGKPFSISYGDGSVSGNLVSDTVSI 80 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccceeeeeeeccCcccccccccceEee
Confidence 59999999999999999999999999999999963335788899999999999999999999999999999999999999
Q ss_pred CceeecCcEEEEEEeeCCccccccccceEEecccCcccCCC-CCcHHHHHHHcCCCCCCEEEEEecCCCCCCCCcEEEEC
Q 010645 169 GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGK-AVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFG 247 (505)
Q Consensus 169 g~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~-~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~fG 247 (505)
++..+.++.||++....+..+....++||||||++..+... ..+++++|++||+|++++||++|++.. ...|.|+||
T Consensus 81 g~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fsl~l~~~~--~~~g~l~~G 158 (317)
T PF00026_consen 81 GGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFSLYLNPSD--SQNGSLTFG 158 (317)
T ss_dssp TTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEEEEEESTT--SSEEEEEES
T ss_pred eeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccccceeeeecc--cccchheee
Confidence 99999999999999876555566788999999988766554 778999999999999999999999874 347999999
Q ss_pred CccCCCcccceEEEecCCcceeEEEeceEEECCeEeeeecCCceEEEcCCCcCccccHHHHHHHHHHhccccccccchhh
Q 010645 248 GMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKA 327 (505)
Q Consensus 248 gid~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~~~~~~~~~~~~~~ 327 (505)
|+|++++.|+++|+|+...++|.+.+++|.+++... .......++||||++++++|.+++++|++++++..
T Consensus 159 g~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~-~~~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~-------- 229 (317)
T PF00026_consen 159 GYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESV-FSSSGQQAILDTGTSYIYLPRSIFDAIIKALGGSY-------- 229 (317)
T ss_dssp SEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEE-EEEEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEE--------
T ss_pred ccccccccCceeccCccccccccccccccccccccc-ccccceeeecccccccccccchhhHHHHhhhcccc--------
Confidence 999999999999999999999999999999999932 23455789999999999999999999999997661
Q ss_pred hhhchhhHHHHHHhhhccccccCCCCCccccccccccCCCcCCCCCccCcccchhhhHHHHHHhhhhhhhhHHHHhhhhh
Q 010645 328 VVSQYGEEIINMLLAKIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVN 407 (505)
Q Consensus 328 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (505)
T Consensus 230 -------------------------------------------------------------------------------- 229 (317)
T PF00026_consen 230 -------------------------------------------------------------------------------- 229 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCceEEcCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCcceEeeeEecccCCCCCCceEeChhhhCc
Q 010645 408 ELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGP 487 (505)
Q Consensus 408 ~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~~~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~ILG~~fl~~ 487 (505)
..+.|.++|+....+|.|+|+|++.+++|+|++|+.+........|++.|..++. ....+.+|||.+|||+
T Consensus 230 --------~~~~~~~~c~~~~~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~-~~~~~~~iLG~~fl~~ 300 (317)
T PF00026_consen 230 --------SDGVYSVPCNSTDSLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYLGIQPMDS-SDDSDDWILGSPFLRN 300 (317)
T ss_dssp --------ECSEEEEETTGGGGSEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEESEEEESS-TTSSSEEEEEHHHHTT
T ss_pred --------cceeEEEecccccccceEEEeeCCEEEEecchHhcccccccccceeEeeeecccc-cccCCceEecHHHhhc
Confidence 0156899999887899999999999999999999998776655689999998654 3455689999999999
Q ss_pred eEEEEECCCCeEEEEEc
Q 010645 488 YHTVFDYSNMRVGFAEA 504 (505)
Q Consensus 488 ~y~vfD~~~~~iGfa~a 504 (505)
+|++||++++|||||+|
T Consensus 301 ~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 301 YYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred eEEEEeCCCCEEEEecC
Confidence 99999999999999997
No 13
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=2.1e-51 Score=405.96 Aligned_cols=272 Identities=35% Similarity=0.538 Sum_probs=235.0
Q ss_pred EEEEEEecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCcccCCCCCCcee-CCceEEEEeccce-EEEEEEEEEEE
Q 010645 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKK-NGKSADIHYGTGA-ISGFFSEDHVK 167 (505)
Q Consensus 90 Y~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~-~~~~~~~~Y~~gs-~~G~~~~D~v~ 167 (505)
|+++|+||||+|++.|+|||||+++||++..|. ...|..+..|++++|+|++. .++.+.+.|++|+ +.|.+++|+|+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~-~~~~~~~~~y~~~~Sst~~~~~~~~~~i~Y~~G~~~~G~~~~D~v~ 79 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP-AAQQGGHKLYDPSKSSTAKLLPGATWSISYGDGSSASGIVYTDTVS 79 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC-chhhccCCcCCCccCccceecCCcEEEEEeCCCCeEEEEEEEEEEE
Confidence 789999999999999999999999999999996 23455677899999999986 4789999999997 89999999999
Q ss_pred ECceeecCcEEEEEEeeCCccccccccceEEecccCcccCC---CCCcHHHHHHHcCCCCCCEEEEEecCCCCCCCCcEE
Q 010645 168 IGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVG---KAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEI 244 (505)
Q Consensus 168 ig~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~---~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L 244 (505)
||+..++++.||+++......+....++||||||++..+.. ...+++++|.+|+. +++||+||.+. ..|+|
T Consensus 80 ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~--~~~Fs~~l~~~----~~G~l 153 (278)
T cd06097 80 IGGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD--APLFTADLRKA----APGFY 153 (278)
T ss_pred ECCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc--CceEEEEecCC----CCcEE
Confidence 99999999999999887654455567899999999876542 35678999999965 79999999863 27999
Q ss_pred EECCccCCCcccceEEEecCC-cceeEEEeceEEECCeEeeeecCCceEEEcCCCcCccccHHHHHHHHHHhcccccccc
Q 010645 245 VFGGMDPDHYKGEHTYVPVTQ-KGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQ 323 (505)
Q Consensus 245 ~fGgid~~~~~g~l~~~p~~~-~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~~~~~~~~~~ 323 (505)
+|||+|++++.|++.|+|+.. .++|.|.+++|.|++.... ......++|||||+++++|.+++++|.+++.+..
T Consensus 154 ~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~---- 228 (278)
T cd06097 154 TFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPW-SRSGFSAIADTGTTLILLPDAIVEAYYSQVPGAY---- 228 (278)
T ss_pred EEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCccee-ecCCceEEeecCCchhcCCHHHHHHHHHhCcCCc----
Confidence 999999999999999999976 7899999999999987443 3457889999999999999999999999883320
Q ss_pred chhhhhhchhhHHHHHHhhhccccccCCCCCccccccccccCCCcCCCCCccCcccchhhhHHHHHHhhhhhhhhHHHHh
Q 010645 324 ECKAVVSQYGEEIINMLLAKIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERIL 403 (505)
Q Consensus 324 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (505)
T Consensus 229 -------------------------------------------------------------------------------- 228 (278)
T cd06097 229 -------------------------------------------------------------------------------- 228 (278)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhccccCCCCCCCceEEcCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCcceEeeeEecccCCCCCCceEeChh
Q 010645 404 NYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDV 483 (505)
Q Consensus 404 ~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~~~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~ILG~~ 483 (505)
+....+.|.+||+. .+|+|+|+| .||||++
T Consensus 229 ---------~~~~~~~~~~~C~~--~~P~i~f~~---------------------------------------~~ilGd~ 258 (278)
T cd06097 229 ---------YDSEYGGWVFPCDT--TLPDLSFAV---------------------------------------FSILGDV 258 (278)
T ss_pred ---------ccCCCCEEEEECCC--CCCCEEEEE---------------------------------------EEEEcch
Confidence 01224679999996 399999999 4899999
Q ss_pred hhCceEEEEECCCCeEEEEE
Q 010645 484 FMGPYHTVFDYSNMRVGFAE 503 (505)
Q Consensus 484 fl~~~y~vfD~~~~~iGfa~ 503 (505)
|||++|+|||++++|||||+
T Consensus 259 fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 259 FLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred hhCceeEEEcCCCceeeecC
Confidence 99999999999999999996
No 14
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=2.8e-50 Score=412.68 Aligned_cols=315 Identities=29% Similarity=0.483 Sum_probs=245.9
Q ss_pred ceEEEEEEecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCcccCCCCCCceeCCceEEEEeccceEEEEEEEEEEE
Q 010645 88 AQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVK 167 (505)
Q Consensus 88 ~~Y~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs~~G~~~~D~v~ 167 (505)
..|+++|+||||+|++.|+|||||+++||+|..| |..++.|+|++|+|++..++.+++.|++|++.|.+++|+|+
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~-----~~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~ 76 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPH-----PFIHTYFHRELSSTYRDLGKGVTVPYTQGSWEGELGTDLVS 76 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCC-----ccccccCCchhCcCcccCCceEEEEECcceEEEEEEEEEEE
Confidence 4699999999999999999999999999999877 33467899999999999999999999999999999999999
Q ss_pred ECceeecCcEE----EEEEeeCCccccccccceEEecccCcccC--CCCCcHHHHHHHcCCCCCCEEEEEecCCC-----
Q 010645 168 IGDLVVKDQEF----IEATREPSLTFLLAKFDGILGLGFQEISV--GKAVPVWYNMVNQGLVNEPVFSFWFNRNA----- 236 (505)
Q Consensus 168 ig~~~~~~~~f----g~~~~~~~~~~~~~~~~GIlGLg~~~~s~--~~~~~~~~~L~~qg~i~~~~FSl~l~~~~----- 236 (505)
||+. .++.| +++....+..+....++||||||++.++. ....+++++|++|+.+ .++||+||+...
T Consensus 77 ig~~--~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~-~~~FS~~l~~~~~~~~~ 153 (364)
T cd05473 77 IPKG--PNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI-PDVFSLQMCGAGLPVNG 153 (364)
T ss_pred ECCC--CccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC-ccceEEEeccccccccc
Confidence 9863 23333 44433222111223679999999988764 2457899999999987 589999985321
Q ss_pred --CCCCCcEEEECCccCCCcccceEEEecCCcceeEEEeceEEECCeEeeeecC---CceEEEcCCCcCccccHHHHHHH
Q 010645 237 --DEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAG---GCAAIADSGTSLLAGPTTIITQV 311 (505)
Q Consensus 237 --~~~~~G~L~fGgid~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~---~~~aiiDSGtt~~~lP~~~~~~l 311 (505)
.....|.|+|||+|++++.|++.|+|+....+|.|.+++|.|++..+..... ...++|||||+++++|++++++|
T Consensus 154 ~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l 233 (364)
T cd05473 154 SASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYNYDKAIVDSGTTNLRLPVKVFNAA 233 (364)
T ss_pred ccccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccccccccCccEEEeCCCcceeCCHHHHHHH
Confidence 1224799999999999999999999999889999999999999988754321 24699999999999999999999
Q ss_pred HHHhccccccccchhhhhhchhhHHHHHHhhhccccccCCCCCccccccccccCCCcCCCCCccCcccchhhhHHHHHHh
Q 010645 312 NHAIGATGIVSQECKAVVSQYGEEIINMLLAKIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQN 391 (505)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (505)
.+++++.....
T Consensus 234 ~~~l~~~~~~~--------------------------------------------------------------------- 244 (364)
T cd05473 234 VDAIKAASLIE--------------------------------------------------------------------- 244 (364)
T ss_pred HHHHHhhcccc---------------------------------------------------------------------
Confidence 99986651000
Q ss_pred hhhhhhhHHHHhhhhhccccCCCCC-CCceEEcCCCCC-----CCCcEEEEECC------EEEEeCcccceeeecC-CCC
Q 010645 392 QLKQNQTQERILNYVNELCDRLPSP-MGESAVDCSRLS-----SLPIVSFTIGG------KIFDLTPDQYILKVGE-GDA 458 (505)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~c~~~~~~-~~~~~~~C~~~~-----~~P~l~f~~~~------~~~~i~~~~y~~~~~~-~~~ 458 (505)
..+.. .+.+.++|.... .+|+|+|+|++ ..+.|+|++|+..... ...
T Consensus 245 --------------------~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y~~~~~~~~~~ 304 (364)
T cd05473 245 --------------------DFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRITILPQLYLRPVEDHGTQ 304 (364)
T ss_pred --------------------cCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEEECHHHhhhhhccCCCc
Confidence 00000 122346786433 58999999964 4789999999986432 224
Q ss_pred cceEe-eeEecccCCCCCCceEeChhhhCceEEEEECCCCeEEEEEcC
Q 010645 459 AQCIS-GFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 505 (505)
Q Consensus 459 ~~C~~-~i~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfa~a~ 505 (505)
..|+. ++. ...+.||||+.|||++|+|||++++|||||+++
T Consensus 305 ~~C~~~~~~------~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~ 346 (364)
T cd05473 305 LDCYKFAIS------QSTNGTVIGAVIMEGFYVVFDRANKRVGFAVST 346 (364)
T ss_pred ceeeEEeee------cCCCceEEeeeeEcceEEEEECCCCEEeeEecc
Confidence 57975 221 123469999999999999999999999999874
No 15
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=2.1e-49 Score=412.22 Aligned_cols=307 Identities=22% Similarity=0.376 Sum_probs=235.7
Q ss_pred cCceEEEEEEecCCCceEEEEecCCCCceeeeCCCCCCCcccC--CCCcccCCCCCCceeCC------------------
Q 010645 86 MDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACY--FHSKYRSGRSSTYKKNG------------------ 145 (505)
Q Consensus 86 ~~~~Y~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C~~~~~C~--~~~~y~~~~SsT~~~~~------------------ 145 (505)
.+.+|+++|+||||||++.|++||||+++||+|.+|. .|. .++.|+|++|+||+...
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~---~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~ 157 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCD---DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDE 157 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCc---ccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCC
Confidence 3678999999999999999999999999999999995 676 45799999999998642
Q ss_pred --ceEEEEeccce-EEEEEEEEEEEECc-----eeecCcEEEEEEeeCCccccccccceEEecccCcccCCCCCcHHHHH
Q 010645 146 --KSADIHYGTGA-ISGFFSEDHVKIGD-----LVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNM 217 (505)
Q Consensus 146 --~~~~~~Y~~gs-~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L 217 (505)
|.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||+....+. |. ...+||||||+...+ ++.||
T Consensus 158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~-f~-~~~~GilGLG~~~~S------l~sql 229 (431)
T PLN03146 158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGT-FD-EKGSGIVGLGGGPLS------LISQL 229 (431)
T ss_pred CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCC-cc-CCCceeEecCCCCcc------HHHHh
Confidence 78999999998 68999999999997 46889999999876542 32 257999999998765 56666
Q ss_pred HHcCCCCCCEEEEEecCCCC-CCCCcEEEECCccCCCccc-ceEEEecCC---cceeEEEeceEEECCeEeeeec-----
Q 010645 218 VNQGLVNEPVFSFWFNRNAD-EEEGGEIVFGGMDPDHYKG-EHTYVPVTQ---KGYWQFDMGDVMIDGQTTGFCA----- 287 (505)
Q Consensus 218 ~~qg~i~~~~FSl~l~~~~~-~~~~G~L~fGgid~~~~~g-~l~~~p~~~---~~~w~v~l~~i~v~~~~~~~~~----- 287 (505)
..+ +. ++||+||.+..+ ....|.|+||+. .++.+ .+.|+|+.. ..+|.|.+++|+||++.+.+..
T Consensus 230 ~~~--~~-~~FSycL~~~~~~~~~~g~l~fG~~--~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~ 304 (431)
T PLN03146 230 GSS--IG-GKFSYCLVPLSSDSNGTSKINFGTN--AIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNG 304 (431)
T ss_pred hHh--hC-CcEEEECCCCCCCCCCcceEEeCCc--cccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCcccccc
Confidence 543 44 599999975322 234799999984 44544 488999863 4689999999999998875432
Q ss_pred -CCceEEEcCCCcCccccHHHHHHHHHHhccccccccchhhhhhchhhHHHHHHhhhccccccCCCCCccccccccccCC
Q 010645 288 -GGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKIGLCTFDGSRGVSMGIESVVPEN 366 (505)
Q Consensus 288 -~~~~aiiDSGtt~~~lP~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (505)
+...+||||||++++||+++|++|.+++.+. +... .+.+.
T Consensus 305 ~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~----------~~~~----------------------------~~~~~- 345 (431)
T PLN03146 305 VEEGNIIIDSGTTLTLLPSDFYSELESAVEEA----------IGGE----------------------------RVSDP- 345 (431)
T ss_pred CCCCcEEEeCCccceecCHHHHHHHHHHHHHH----------hccc----------------------------cCCCC-
Confidence 2247999999999999999999998887443 0000 00000
Q ss_pred CcCCCCCccCcccchhhhHHHHHHhhhhhhhhHHHHhhhhhccccCCCCCCCceEEcCCCCCCCCcEEEEECCEEEEeCc
Q 010645 367 NHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTP 446 (505)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~~~~~~i~~ 446 (505)
......|+... ....+|+|+|+|+|.++.|+|
T Consensus 346 -------------------------------------~~~~~~C~~~~-----------~~~~~P~i~~~F~Ga~~~l~~ 377 (431)
T PLN03146 346 -------------------------------------QGLLSLCYSST-----------SDIKLPIITAHFTGADVKLQP 377 (431)
T ss_pred -------------------------------------CCCCCccccCC-----------CCCCCCeEEEEECCCeeecCc
Confidence 00011333211 013689999999999999999
Q ss_pred ccceeeecCCCCcceEeeeEecccCCCCCCceEeChhhhCceEEEEECCCCeEEEEEc
Q 010645 447 DQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 504 (505)
Q Consensus 447 ~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfa~a 504 (505)
++|++...++ ..|+. +... .+.||||+.|||++|++||++++|||||++
T Consensus 378 ~~~~~~~~~~--~~Cl~-~~~~------~~~~IlG~~~q~~~~vvyDl~~~~igFa~~ 426 (431)
T PLN03146 378 LNTFVKVSED--LVCFA-MIPT------SSIAIFGNLAQMNFLVGYDLESKTVSFKPT 426 (431)
T ss_pred ceeEEEcCCC--cEEEE-EecC------CCceEECeeeEeeEEEEEECCCCEEeeecC
Confidence 9999976443 57985 4321 236999999999999999999999999986
No 16
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=6e-49 Score=391.91 Aligned_cols=278 Identities=30% Similarity=0.549 Sum_probs=239.7
Q ss_pred eEEEEEEecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCcccCCCCCCceeCCceEEEEeccc-eEEEEEEEEEEE
Q 010645 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG-AISGFFSEDHVK 167 (505)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~g-s~~G~~~~D~v~ 167 (505)
.|+++|.||||+|++.|++||||+++||+ .+++.|++| .+.|.+++|+|+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------~~~~~Y~~g~~~~G~~~~D~v~ 52 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------DFSISYGDGTSASGTWGTDTVS 52 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------eeEEEeccCCcEEEEEEEEEEE
Confidence 59999999999999999999999999997 578899995 599999999999
Q ss_pred ECceeecCcEEEEEEeeCCccccccccceEEecccCcccC-----CCCCcHHHHHHHcCCCCCCEEEEEecCCCCCCCCc
Q 010645 168 IGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV-----GKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGG 242 (505)
Q Consensus 168 ig~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~-----~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G 242 (505)
+++..++++.||+++... ..+||||||++..+. ...++++++|++||.|++++||+||.+.. ...|
T Consensus 53 ~g~~~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~--~~~g 123 (295)
T cd05474 53 IGGATVKNLQFAVANSTS-------SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAYSLYLNDLD--ASTG 123 (295)
T ss_pred ECCeEecceEEEEEecCC-------CCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEEEEEeCCCC--CCce
Confidence 999999999999998732 358999999988743 23457999999999999999999998753 2379
Q ss_pred EEEECCccCCCcccceEEEecCCc------ceeEEEeceEEECCeEee--eecCCceEEEcCCCcCccccHHHHHHHHHH
Q 010645 243 EIVFGGMDPDHYKGEHTYVPVTQK------GYWQFDMGDVMIDGQTTG--FCAGGCAAIADSGTSLLAGPTTIITQVNHA 314 (505)
Q Consensus 243 ~L~fGgid~~~~~g~l~~~p~~~~------~~w~v~l~~i~v~~~~~~--~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~ 314 (505)
.|+|||+|+.++.|++.|+|+... .+|.|.+++|.+++.... .......++|||||+++++|.+++++|+++
T Consensus 124 ~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~ 203 (295)
T cd05474 124 SILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSDIVDAIAKQ 203 (295)
T ss_pred eEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHHHHHHHHHH
Confidence 999999999999999999999765 789999999999998753 234567899999999999999999999999
Q ss_pred hccccccccchhhhhhchhhHHHHHHhhhccccccCCCCCccccccccccCCCcCCCCCccCcccchhhhHHHHHHhhhh
Q 010645 315 IGATGIVSQECKAVVSQYGEEIINMLLAKIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLK 394 (505)
Q Consensus 315 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (505)
+++..
T Consensus 204 ~~~~~--------------------------------------------------------------------------- 208 (295)
T cd05474 204 LGATY--------------------------------------------------------------------------- 208 (295)
T ss_pred hCCEE---------------------------------------------------------------------------
Confidence 86651
Q ss_pred hhhhHHHHhhhhhccccCCCCCCCceEEcCCCCCCCCcEEEEECCEEEEeCcccceeeecC--CCCcceEeeeEecccCC
Q 010645 395 QNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGE--GDAAQCISGFSALDVAP 472 (505)
Q Consensus 395 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~~~~~~i~~~~y~~~~~~--~~~~~C~~~i~~~~~~~ 472 (505)
....+.|.++|+.... |+|+|+|+|.+++||+++|+++... .....|++.|+..+
T Consensus 209 -------------------~~~~~~~~~~C~~~~~-p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~~~C~~~i~~~~--- 265 (295)
T cd05474 209 -------------------DSDEGLYVVDCDAKDD-GSLTFNFGGATISVPLSDLVLPASTDDGGDGACYLGIQPST--- 265 (295)
T ss_pred -------------------cCCCcEEEEeCCCCCC-CEEEEEECCeEEEEEHHHhEeccccCCCCCCCeEEEEEeCC---
Confidence 0113568899997766 9999999999999999999987642 34578998888643
Q ss_pred CCCCceEeChhhhCceEEEEECCCCeEEEEEc
Q 010645 473 PRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 504 (505)
Q Consensus 473 ~~~~~~ILG~~fl~~~y~vfD~~~~~iGfa~a 504 (505)
. +.||||++|||++|++||++++|||||+|
T Consensus 266 -~-~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 266 -S-DYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred -C-CcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 1 57999999999999999999999999987
No 17
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=3e-49 Score=399.14 Aligned_cols=282 Identities=29% Similarity=0.461 Sum_probs=234.7
Q ss_pred ceEEEEEEecCCCceEEEEecCCCCceeeeCCCCCCCcccC--CCCcccCCCCCCceeC----------------CceEE
Q 010645 88 AQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACY--FHSKYRSGRSSTYKKN----------------GKSAD 149 (505)
Q Consensus 88 ~~Y~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C~~~~~C~--~~~~y~~~~SsT~~~~----------------~~~~~ 149 (505)
..|+++|+||||+|++.|+|||||+++||+|..|. .|. .++.|+|++|+|++.. .|.+.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~---~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~ 78 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCK---NCGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYS 78 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCC---CcCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEE
Confidence 47999999999999999999999999999999996 464 3478999999999863 56899
Q ss_pred EEeccce-EEEEEEEEEEEECceeec-------CcEEEEEEeeCCccccccccceEEecccCcccCCCCCcHHHHHHHcC
Q 010645 150 IHYGTGA-ISGFFSEDHVKIGDLVVK-------DQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQG 221 (505)
Q Consensus 150 ~~Y~~gs-~~G~~~~D~v~ig~~~~~-------~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg 221 (505)
+.|++|+ +.|.+++|+|+||+..+. ++.|||+....+ .+.....+||||||+...+. ..+.+..|++++
T Consensus 79 i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~--~~~~~~~l~~~~ 155 (326)
T cd06096 79 ISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETN-LFLTQQATGILGLSLTKNNG--LPTPIILLFTKR 155 (326)
T ss_pred EEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccC-cccccccceEEEccCCcccc--cCchhHHHHHhc
Confidence 9999997 899999999999987653 467999877654 34455789999999986542 223445577887
Q ss_pred CCCC--CEEEEEecCCCCCCCCcEEEECCccCCCcc----------cceEEEecCCcceeEEEeceEEECCeE-eeeecC
Q 010645 222 LVNE--PVFSFWFNRNADEEEGGEIVFGGMDPDHYK----------GEHTYVPVTQKGYWQFDMGDVMIDGQT-TGFCAG 288 (505)
Q Consensus 222 ~i~~--~~FSl~l~~~~~~~~~G~L~fGgid~~~~~----------g~l~~~p~~~~~~w~v~l~~i~v~~~~-~~~~~~ 288 (505)
.+.. ++||+||++. .|.|+|||+|+.++. +++.|+|+....+|.|.+++|+++++. ......
T Consensus 156 ~~~~~~~~FS~~l~~~-----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~~~ 230 (326)
T cd06096 156 PKLKKDKIFSICLSED-----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGNTK 230 (326)
T ss_pred ccccCCceEEEEEcCC-----CeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccceeccc
Confidence 7765 9999999864 699999999999987 789999999889999999999999886 112345
Q ss_pred CceEEEcCCCcCccccHHHHHHHHHHhccccccccchhhhhhchhhHHHHHHhhhccccccCCCCCccccccccccCCCc
Q 010645 289 GCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKIGLCTFDGSRGVSMGIESVVPENNH 368 (505)
Q Consensus 289 ~~~aiiDSGtt~~~lP~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (505)
...++|||||++++||++++++|.++
T Consensus 231 ~~~aivDSGTs~~~lp~~~~~~l~~~------------------------------------------------------ 256 (326)
T cd06096 231 GLGMLVDSGSTLSHFPEDLYNKINNF------------------------------------------------------ 256 (326)
T ss_pred CCCEEEeCCCCcccCCHHHHHHHHhh------------------------------------------------------
Confidence 77899999999999999999887542
Q ss_pred CCCCCccCcccchhhhHHHHHHhhhhhhhhHHHHhhhhhccccCCCCCCCceEEcCCCCCCCCcEEEEEC-CEEEEeCcc
Q 010645 369 RASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIG-GKIFDLTPD 447 (505)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~-~~~~~i~~~ 447 (505)
+|+|+|.|+ |+.++++|+
T Consensus 257 -------------------------------------------------------------~P~i~~~f~~g~~~~i~p~ 275 (326)
T cd06096 257 -------------------------------------------------------------FPTITIIFENNLKIDWKPS 275 (326)
T ss_pred -------------------------------------------------------------cCcEEEEEcCCcEEEECHH
Confidence 289999997 899999999
Q ss_pred cceeeecCCCCcceEeeeEecccCCCCCCceEeChhhhCceEEEEECCCCeEEEEEc
Q 010645 448 QYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 504 (505)
Q Consensus 448 ~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfa~a 504 (505)
+|+++.... .|..++.. ..+.+|||++|||++|+|||++++|||||++
T Consensus 276 ~y~~~~~~~---~c~~~~~~------~~~~~ILG~~flr~~y~vFD~~~~riGfa~~ 323 (326)
T cd06096 276 SYLYKKESF---WCKGGEKS------VSNKPILGASFFKNKQIIFDLDNNRIGFVES 323 (326)
T ss_pred HhccccCCc---eEEEEEec------CCCceEEChHHhcCcEEEEECcCCEEeeEcC
Confidence 999875432 46665542 2247999999999999999999999999987
No 18
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-49 Score=406.97 Aligned_cols=321 Identities=43% Similarity=0.785 Sum_probs=263.1
Q ss_pred ccEEeceeccCceEEEEEEecCCCceEEEEecCCCCceeeeCCCCCCCcccCC-CCc-ccCCCCCCceeCCce-------
Q 010645 77 ADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYF-HSK-YRSGRSSTYKKNGKS------- 147 (505)
Q Consensus 77 ~~~~pl~n~~~~~Y~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C~~~~~C~~-~~~-y~~~~SsT~~~~~~~------- 147 (505)
....++..+.+.+|+++|+||||||+|.|++||||+++||+|..|.. .|.. +.. |+|+.|+||+..+|.
T Consensus 34 ~~~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~--~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~ 111 (398)
T KOG1339|consen 34 PLPESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSS--ACYSQHNPIFDPSASSTYKSVGCSSPRCKSL 111 (398)
T ss_pred ccccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccc--cccccCCCccCccccccccccCCCCcccccc
Confidence 34456667778899999999999999999999999999999999952 6864 444 999999999987743
Q ss_pred -----------EEEEeccc-eEEEEEEEEEEEECc---eeecCcEEEEEEeeCCccccc-cccceEEecccCcccCCCCC
Q 010645 148 -----------ADIHYGTG-AISGFFSEDHVKIGD---LVVKDQEFIEATREPSLTFLL-AKFDGILGLGFQEISVGKAV 211 (505)
Q Consensus 148 -----------~~~~Y~~g-s~~G~~~~D~v~ig~---~~~~~~~fg~~~~~~~~~~~~-~~~~GIlGLg~~~~s~~~~~ 211 (505)
|.+.|++| ++.|.+++|+|++++ ..++++.|||+....+. +.. ..++||||||+...+.....
T Consensus 112 ~~~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~~q~ 190 (398)
T KOG1339|consen 112 PQSCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVPSQL 190 (398)
T ss_pred ccCcccCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccc-cccccccceEeecCCCCccceeec
Confidence 99999995 499999999999998 78888999999988764 444 67899999999988854433
Q ss_pred cHHHHHHHcCCCCCCEEEEEecCCCCC-CCCcEEEECCccCCCcccceEEEecCCcc--eeEEEeceEEECCeE----ee
Q 010645 212 PVWYNMVNQGLVNEPVFSFWFNRNADE-EEGGEIVFGGMDPDHYKGEHTYVPVTQKG--YWQFDMGDVMIDGQT----TG 284 (505)
Q Consensus 212 ~~~~~L~~qg~i~~~~FSl~l~~~~~~-~~~G~L~fGgid~~~~~g~l~~~p~~~~~--~w~v~l~~i~v~~~~----~~ 284 (505)
+.+ +.. .++||+||.+.... ...|.|+||++|+.++.+.+.|+|+.... +|.+.+.+|.|+++. ..
T Consensus 191 ~~~------~~~-~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~ 263 (398)
T KOG1339|consen 191 PSF------YNA-INVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSL 263 (398)
T ss_pred ccc------cCC-ceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcce
Confidence 322 211 23899999987433 24899999999999999999999998877 999999999999842 22
Q ss_pred eecCCceEEEcCCCcCccccHHHHHHHHHHhccccccccchhhhhhchhhHHHHHHhhhccccccCCCCCcccccccccc
Q 010645 285 FCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKIGLCTFDGSRGVSMGIESVVP 364 (505)
Q Consensus 285 ~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (505)
++.+...+++||||+++++|.++|++|.+++++.-
T Consensus 264 ~~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~--------------------------------------------- 298 (398)
T KOG1339|consen 264 FCTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEV--------------------------------------------- 298 (398)
T ss_pred EecCCCCEEEECCcceeeccHHHHHHHHHHHHhhe---------------------------------------------
Confidence 33335889999999999999999999999997650
Q ss_pred CCCcCCCCCccCcccchhhhHHHHHHhhhhhhhhHHHHhhhhhccccCCCCCCCceEEcCCCCCC----CCcEEEEEC-C
Q 010645 365 ENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSS----LPIVSFTIG-G 439 (505)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~----~P~l~f~~~-~ 439 (505)
+.....+.+.++|..... +|.|+|+|+ |
T Consensus 299 -----------------------------------------------~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~~g 331 (398)
T KOG1339|consen 299 -----------------------------------------------SVVGTDGEYFVPCFSISTSGVKLPDITFHFGGG 331 (398)
T ss_pred -----------------------------------------------eccccCCceeeecccCCCCcccCCcEEEEECCC
Confidence 001124567778887766 999999998 8
Q ss_pred EEEEeCcccceeeecCCCCcceEeeeEecccCCCCCCceEeChhhhCceEEEEECC-CCeEEEEEc
Q 010645 440 KIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYS-NMRVGFAEA 504 (505)
Q Consensus 440 ~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~-~~~iGfa~a 504 (505)
+.|.+++++|+++....... |...+..++.. +.||||+.|+|+++++||.. ++|||||++
T Consensus 332 ~~~~l~~~~y~~~~~~~~~~-Cl~~~~~~~~~----~~~ilG~~~~~~~~~~~D~~~~~riGfa~~ 392 (398)
T KOG1339|consen 332 AVFSLPPKNYLVEVSDGGGV-CLAFFNGMDSG----PLWILGDVFQQNYLVVFDLGENSRVGFAPA 392 (398)
T ss_pred cEEEeCccceEEEECCCCCc-eeeEEecCCCC----ceEEEchHHhCCEEEEEeCCCCCEEEeccc
Confidence 99999999999987655222 99888765421 68999999999999999999 999999985
No 19
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=6e-48 Score=385.35 Aligned_cols=287 Identities=25% Similarity=0.445 Sum_probs=223.3
Q ss_pred eEEEEEEecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCcccCCCCCCceeCCceEEEEeccce-EEEEEEEEEEE
Q 010645 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA-ISGFFSEDHVK 167 (505)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs-~~G~~~~D~v~ 167 (505)
+|+++|.||||||++.|++||||+++||+|.+| |.|.+.|++|+ +.|.+++|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c------------------------~~~~i~Yg~Gs~~~G~~~~D~v~ 56 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC------------------------CLYQVSYGDGSYTTGDLATDTLT 56 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC------------------------CeeeeEeCCCceEEEEEEEEEEE
Confidence 599999999999999999999999999986544 67899999998 58999999999
Q ss_pred ECce-eecCcEEEEEEeeCCccccccccceEEecccCcccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCCCCCcEEEE
Q 010645 168 IGDL-VVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVF 246 (505)
Q Consensus 168 ig~~-~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~f 246 (505)
|++. .++++.|||+....+. + ...+||||||+...+ +..++..+ .+++||+||.+.. ....|+|+|
T Consensus 57 ig~~~~~~~~~Fg~~~~~~~~-~--~~~~GilGLg~~~~s------~~~ql~~~---~~~~FS~~L~~~~-~~~~G~l~f 123 (299)
T cd05472 57 LGSSDVVPGFAFGCGHDNEGL-F--GGAAGLLGLGRGKLS------LPSQTASS---YGGVFSYCLPDRS-SSSSGYLSF 123 (299)
T ss_pred eCCCCccCCEEEECCccCCCc-c--CCCCEEEECCCCcch------HHHHhhHh---hcCceEEEccCCC-CCCCceEEe
Confidence 9998 8999999999876542 2 267999999987654 44555544 3589999998643 133799999
Q ss_pred CCccCCCcccceEEEecCCc----ceeEEEeceEEECCeEeeee---cCCceEEEcCCCcCccccHHHHHHHHHHhcccc
Q 010645 247 GGMDPDHYKGEHTYVPVTQK----GYWQFDMGDVMIDGQTTGFC---AGGCAAIADSGTSLLAGPTTIITQVNHAIGATG 319 (505)
Q Consensus 247 Ggid~~~~~g~l~~~p~~~~----~~w~v~l~~i~v~~~~~~~~---~~~~~aiiDSGtt~~~lP~~~~~~l~~~~~~~~ 319 (505)
||+|+. .|++.|+|+... .+|.|++++|+|+++.+... .....++|||||+++++|++++++|.+++.+..
T Consensus 124 Gg~d~~--~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~ 201 (299)
T cd05472 124 GAAASV--PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRDAFRAAM 201 (299)
T ss_pred CCcccc--CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHHHHHHHHHHh
Confidence 999998 899999999753 68999999999999987542 235679999999999999999999999986540
Q ss_pred ccccchhhhhhchhhHHHHHHhhhccccccCCCCCccccccccccCCCcCCCCCccCcccchhhhHHHHHHhhhhhhhhH
Q 010645 320 IVSQECKAVVSQYGEEIINMLLAKIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQ 399 (505)
Q Consensus 320 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (505)
..+ .. . .
T Consensus 202 ----------~~~-----------------~~-------------~-----~---------------------------- 208 (299)
T cd05472 202 ----------AAY-----------------PR-------------A-----P---------------------------- 208 (299)
T ss_pred ----------ccC-----------------CC-------------C-----C----------------------------
Confidence 000 00 0 0
Q ss_pred HHHhhhhhccccCCCCCCCceEEcCCCCCCCCcEEEEEC-CEEEEeCcccceeeecCCCCcceEeeeEecccCCCCCCce
Q 010645 400 ERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIG-GKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLW 478 (505)
Q Consensus 400 ~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~-~~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~ 478 (505)
..+..+.|+.. +|.....+|+|+|+|+ +..++|+|++|++... .....|+ ++...+ ..++.|
T Consensus 209 ---~~~~~~~C~~~---------~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~-~~~~~C~-~~~~~~---~~~~~~ 271 (299)
T cd05472 209 ---GFSILDTCYDL---------SGFRSVSVPTVSLHFQGGADVELDASGVLYPVD-DSSQVCL-AFAGTS---DDGGLS 271 (299)
T ss_pred ---CCCCCCccCcC---------CCCcCCccCCEEEEECCCCEEEeCcccEEEEec-CCCCEEE-EEeCCC---CCCCCE
Confidence 00001123321 2333357999999997 8999999999998432 2346897 454321 234579
Q ss_pred EeChhhhCceEEEEECCCCeEEEEEc
Q 010645 479 ILGDVFMGPYHTVFDYSNMRVGFAEA 504 (505)
Q Consensus 479 ILG~~fl~~~y~vfD~~~~~iGfa~a 504 (505)
|||+.|||++|+|||++++|||||++
T Consensus 272 ilG~~fl~~~~vvfD~~~~~igfa~~ 297 (299)
T cd05472 272 IIGNVQQQTFRVVYDVAGGRIGFAPG 297 (299)
T ss_pred EEchHHccceEEEEECCCCEEeEecC
Confidence 99999999999999999999999986
No 20
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=5.4e-46 Score=367.82 Aligned_cols=279 Identities=48% Similarity=0.866 Sum_probs=241.3
Q ss_pred EEEEEEecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCc--ccCCCCCCceeCCceEEEEeccceEEEEEEEEEEE
Q 010645 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSK--YRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVK 167 (505)
Q Consensus 90 Y~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C~~~~~C~~~~~--y~~~~SsT~~~~~~~~~~~Y~~gs~~G~~~~D~v~ 167 (505)
|+++|.||+|+|++.|++||||+++||+|..|.. ..|..... |++..|+++....+.+.+.|++|++.|.+++|+|+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~Y~~g~~~g~~~~D~v~ 79 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTS-CSCQKHPRFKYDSSKSSTYKDTGCTFSITYGDGSVTGGLGTDTVT 79 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCc-cccccCCCCccCccCCceeecCCCEEEEEECCCeEEEEEEEeEEE
Confidence 7899999999999999999999999999999962 22333333 89999999999999999999999999999999999
Q ss_pred ECceeecCcEEEEEEeeCCccccccccceEEecccCcccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCCCCCcEEEEC
Q 010645 168 IGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFG 247 (505)
Q Consensus 168 ig~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~fG 247 (505)
+++..++++.||++..... .+....++||||||+...+.....+++++|.+++.|.+++||+||.+.......|.|+||
T Consensus 80 ~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~G 158 (283)
T cd05471 80 IGGLTIPNQTFGCATSESG-DFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFG 158 (283)
T ss_pred ECCEEEeceEEEEEeccCC-cccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEc
Confidence 9999999999999997754 344567899999999887666678899999999999999999999885322348999999
Q ss_pred CccCCCcccceEEEecCC--cceeEEEeceEEECCeEeeeecCCceEEEcCCCcCccccHHHHHHHHHHhccccccccch
Q 010645 248 GMDPDHYKGEHTYVPVTQ--KGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQEC 325 (505)
Q Consensus 248 gid~~~~~g~l~~~p~~~--~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~~~~~~~~~~~~ 325 (505)
|+|+.++.+++.|+|+.. ..+|.+.+++|.+++...........++||||++++++|.+++++|++++.+...
T Consensus 159 g~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~----- 233 (283)
T cd05471 159 GIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVS----- 233 (283)
T ss_pred ccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCccc-----
Confidence 999999999999999987 7899999999999997422235678999999999999999999999999876510
Q ss_pred hhhhhchhhHHHHHHhhhccccccCCCCCccccccccccCCCcCCCCCccCcccchhhhHHHHHHhhhhhhhhHHHHhhh
Q 010645 326 KAVVSQYGEEIINMLLAKIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNY 405 (505)
Q Consensus 326 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (505)
T Consensus 234 -------------------------------------------------------------------------------- 233 (283)
T cd05471 234 -------------------------------------------------------------------------------- 233 (283)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccccCCCCCCCceEEcCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCcceEeeeEecccCCCCCCceEeChhhh
Q 010645 406 VNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFM 485 (505)
Q Consensus 406 ~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~~~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~ILG~~fl 485 (505)
.....+..+|.....+|+|+|+| .+|||++||
T Consensus 234 ---------~~~~~~~~~~~~~~~~p~i~f~f---------------------------------------~~ilG~~fl 265 (283)
T cd05471 234 ---------SSDGGYGVDCSPCDTLPDITFTF---------------------------------------LWILGDVFL 265 (283)
T ss_pred ---------ccCCcEEEeCcccCcCCCEEEEE---------------------------------------EEEccHhhh
Confidence 01234667788778999999999 479999999
Q ss_pred CceEEEEECCCCeEEEEE
Q 010645 486 GPYHTVFDYSNMRVGFAE 503 (505)
Q Consensus 486 ~~~y~vfD~~~~~iGfa~ 503 (505)
|++|++||+++++||||+
T Consensus 266 ~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 266 RNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred hheEEEEeCCCCEEeecC
Confidence 999999999999999985
No 21
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=3.3e-45 Score=359.10 Aligned_cols=248 Identities=28% Similarity=0.509 Sum_probs=209.9
Q ss_pred eEEEEEEecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCcccCCCCCCceeCCceEEEEeccce-EEEEEEEEEEE
Q 010645 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA-ISGFFSEDHVK 167 (505)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs-~~G~~~~D~v~ 167 (505)
+|+++|+||||+|++.|+|||||+++||+| |.+.+.|++|+ +.|.+++|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------~~~~~~Y~dg~~~~G~~~~D~v~ 53 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---------------------------CSYEYSYGDGSSTSGVLATETFT 53 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------CceEeEeCCCceeeeeEEEEEEE
Confidence 599999999999999999999999999985 45788999775 89999999999
Q ss_pred ECce--eecCcEEEEEEeeCCccccccccceEEecccCcccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCCCCCcEEE
Q 010645 168 IGDL--VVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIV 245 (505)
Q Consensus 168 ig~~--~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~ 245 (505)
|++. .++++.|||+..... +....++||||||+...+ ++.+|..++ ++||+||.+..+....|+|+
T Consensus 54 ~g~~~~~~~~~~Fg~~~~~~~--~~~~~~~GIlGLg~~~~s------~~~ql~~~~----~~Fs~~l~~~~~~~~~G~l~ 121 (265)
T cd05476 54 FGDSSVSVPNVAFGCGTDNEG--GSFGGADGILGLGRGPLS------LVSQLGSTG----NKFSYCLVPHDDTGGSSPLI 121 (265)
T ss_pred ecCCCCccCCEEEEecccccC--CccCCCCEEEECCCCccc------HHHHhhccc----CeeEEEccCCCCCCCCCeEE
Confidence 9998 899999999997754 455678999999987544 677887776 89999998743233489999
Q ss_pred ECCccCCCcccceEEEecCC----cceeEEEeceEEECCeEeee--------ecCCceEEEcCCCcCccccHHHHHHHHH
Q 010645 246 FGGMDPDHYKGEHTYVPVTQ----KGYWQFDMGDVMIDGQTTGF--------CAGGCAAIADSGTSLLAGPTTIITQVNH 313 (505)
Q Consensus 246 fGgid~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~~~~~~~--------~~~~~~aiiDSGtt~~~lP~~~~~~l~~ 313 (505)
|||+|++ +.+++.|+|+.. .++|.+.+++|+|+++.+.+ ......++|||||+++++|+++
T Consensus 122 fGg~d~~-~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~~------ 194 (265)
T cd05476 122 LGDAADL-GGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPA------ 194 (265)
T ss_pred ECCcccc-cCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCccc------
Confidence 9999999 999999999975 57999999999999988742 2346789999999999999531
Q ss_pred HhccccccccchhhhhhchhhHHHHHHhhhccccccCCCCCccccccccccCCCcCCCCCccCcccchhhhHHHHHHhhh
Q 010645 314 AIGATGIVSQECKAVVSQYGEEIINMLLAKIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQL 393 (505)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (505)
T Consensus 195 -------------------------------------------------------------------------------- 194 (265)
T cd05476 195 -------------------------------------------------------------------------------- 194 (265)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhHHHHhhhhhccccCCCCCCCceEEcCCCCCCCCcEEEEEC-CEEEEeCcccceeeecCCCCcceEeeeEecccCC
Q 010645 394 KQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIG-GKIFDLTPDQYILKVGEGDAAQCISGFSALDVAP 472 (505)
Q Consensus 394 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~-~~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~ 472 (505)
+|+|+|+|+ ++++.|++++|+.... ....|+. +...
T Consensus 195 ------------------------------------~P~i~~~f~~~~~~~i~~~~y~~~~~--~~~~C~~-~~~~---- 231 (265)
T cd05476 195 ------------------------------------YPDLTLHFDGGADLELPPENYFVDVG--EGVVCLA-ILSS---- 231 (265)
T ss_pred ------------------------------------cCCEEEEECCCCEEEeCcccEEEECC--CCCEEEE-EecC----
Confidence 288999998 8999999999998543 3468975 4422
Q ss_pred CCCCceEeChhhhCceEEEEECCCCeEEEEEcC
Q 010645 473 PRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 505 (505)
Q Consensus 473 ~~~~~~ILG~~fl~~~y~vfD~~~~~iGfa~a~ 505 (505)
...+.||||++|||++|++||++++|||||++.
T Consensus 232 ~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~ 264 (265)
T cd05476 232 SSGGVSILGNIQQQNFLVEYDLENSRLGFAPAD 264 (265)
T ss_pred CCCCcEEEChhhcccEEEEEECCCCEEeeecCC
Confidence 245689999999999999999999999999873
No 22
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.3e-44 Score=356.28 Aligned_cols=257 Identities=23% Similarity=0.422 Sum_probs=211.2
Q ss_pred eEEEEEEecCCCceEEEEecCCCCceeeeCC-CCCCCcccCCCCcccCCCCCCceeCCceEEEEeccc-eEEEEEEEEEE
Q 010645 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSS-KCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG-AISGFFSEDHV 166 (505)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~-~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~g-s~~G~~~~D~v 166 (505)
+|+++|.||||+|++.|++||||+++||+|. .|. .| .|.|.+.|++| ++.|.+++|+|
T Consensus 2 ~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~---~c-----------------~c~~~i~Ygd~~~~~G~~~~D~v 61 (273)
T cd05475 2 YYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCT---GC-----------------QCDYEIEYADGGSSMGVLVTDIF 61 (273)
T ss_pred ceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCC---CC-----------------cCccEeEeCCCCceEEEEEEEEE
Confidence 6999999999999999999999999999984 563 45 46799999965 58999999999
Q ss_pred EECc----eeecCcEEEEEEeeCCcc-ccccccceEEecccCcccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCCCCC
Q 010645 167 KIGD----LVVKDQEFIEATREPSLT-FLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEG 241 (505)
Q Consensus 167 ~ig~----~~~~~~~fg~~~~~~~~~-~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~ 241 (505)
+++. ..++++.|||+....+.. ......+||||||+...+ ++++|.+++.| +++||+||.+.. .
T Consensus 62 ~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s------~~~ql~~~~~i-~~~Fs~~l~~~~----~ 130 (273)
T cd05475 62 SLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKIS------LPSQLASQGII-KNVIGHCLSSNG----G 130 (273)
T ss_pred EEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCC------HHHHHHhcCCc-CceEEEEccCCC----C
Confidence 9953 577899999997654321 234468999999987644 78999999999 899999997632 6
Q ss_pred cEEEECCccCCCcccceEEEecCCc---ceeEEEeceEEECCeEeeeecCCceEEEcCCCcCccccHHHHHHHHHHhccc
Q 010645 242 GEIVFGGMDPDHYKGEHTYVPVTQK---GYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318 (505)
Q Consensus 242 G~L~fGgid~~~~~g~l~~~p~~~~---~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~~~~~ 318 (505)
|.|+|| |..++.+++.|+|+.+. .+|.|++.+|+|+++.. ......++|||||+++++|+++|
T Consensus 131 g~l~~G--~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~--~~~~~~~ivDTGTt~t~lp~~~y---------- 196 (273)
T cd05475 131 GFLFFG--DDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPT--GGKGLEVVFDSGSSYTYFNAQAY---------- 196 (273)
T ss_pred eEEEEC--CCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEEC--cCCCceEEEECCCceEEcCCccc----------
Confidence 899998 45667889999999764 79999999999999854 34567899999999999996421
Q ss_pred cccccchhhhhhchhhHHHHHHhhhccccccCCCCCccccccccccCCCcCCCCCccCcccchhhhHHHHHHhhhhhhhh
Q 010645 319 GIVSQECKAVVSQYGEEIINMLLAKIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQT 398 (505)
Q Consensus 319 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (505)
T Consensus 197 -------------------------------------------------------------------------------- 196 (273)
T cd05475 197 -------------------------------------------------------------------------------- 196 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhhhccccCCCCCCCceEEcCCCCCCCCcEEEEECC----EEEEeCcccceeeecCCCCcceEeeeEecccCCCC
Q 010645 399 QERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGG----KIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPR 474 (505)
Q Consensus 399 ~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~~----~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~ 474 (505)
+|+|+|.|++ ++++|+|++|++.... ...|+..+...+. ..
T Consensus 197 -------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~--~~~Cl~~~~~~~~--~~ 241 (273)
T cd05475 197 -------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEK--GNVCLGILNGSEI--GL 241 (273)
T ss_pred -------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCC--CCEEEEEecCCCc--CC
Confidence 5789999976 7999999999987433 3579876654321 22
Q ss_pred CCceEeChhhhCceEEEEECCCCeEEEEEcC
Q 010645 475 GPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 505 (505)
Q Consensus 475 ~~~~ILG~~fl~~~y~vfD~~~~~iGfa~a~ 505 (505)
++.||||+.|||++|++||++++|||||++.
T Consensus 242 ~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~ 272 (273)
T cd05475 242 GNTNIIGDISMQGLMVIYDNEKQQIGWVRSD 272 (273)
T ss_pred CceEEECceEEEeeEEEEECcCCEeCcccCC
Confidence 4579999999999999999999999999874
No 23
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=4.6e-41 Score=342.40 Aligned_cols=314 Identities=16% Similarity=0.237 Sum_probs=230.4
Q ss_pred ecCCCce-EEEEecCCCCceeeeCCCCCC---------CcccCCCCcccCCC------CCCceeCCceEEEE-eccce-E
Q 010645 96 IGTPPQN-FTVIFDTGSSNLWVPSSKCYF---------SIACYFHSKYRSGR------SSTYKKNGKSADIH-YGTGA-I 157 (505)
Q Consensus 96 iGtP~Q~-~~l~lDTGSs~~Wv~~~~C~~---------~~~C~~~~~y~~~~------SsT~~~~~~~~~~~-Y~~gs-~ 157 (505)
+|||-.+ +.|++||||+++||+|..|.. +..|..+..|++.. ++......|.+... |++|+ .
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~~gs~t 81 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAGHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPVTGECA 81 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCCCcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCcCeeEccccccCcEe
Confidence 5788777 899999999999997764431 45676666666542 22333345777554 77885 7
Q ss_pred EEEEEEEEEEECc--------eeecCcEEEEEEeeCCccccccccceEEecccCcccCCCCCcHHHHHHHcCCCCCCEEE
Q 010645 158 SGFFSEDHVKIGD--------LVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFS 229 (505)
Q Consensus 158 ~G~~~~D~v~ig~--------~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS 229 (505)
.|.+++|+|+|+. ..++++.|||+.......+ ...++||||||++.++ +..||..++. .+++||
T Consensus 82 ~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~-~~~~dGIlGLg~~~lS------l~sql~~~~~-~~~~FS 153 (362)
T cd05489 82 TGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGL-PPGAQGVAGLGRSPLS------LPAQLASAFG-VARKFA 153 (362)
T ss_pred eEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCC-ccccccccccCCCccc------hHHHhhhhcC-CCcceE
Confidence 8999999999973 3688999999976432122 2347999999999877 4567776655 569999
Q ss_pred EEecCCCCCCCCcEEEECCccCCCcc------cceEEEecCCc----ceeEEEeceEEECCeEeeee--------cCCce
Q 010645 230 FWFNRNADEEEGGEIVFGGMDPDHYK------GEHTYVPVTQK----GYWQFDMGDVMIDGQTTGFC--------AGGCA 291 (505)
Q Consensus 230 l~l~~~~~~~~~G~L~fGgid~~~~~------g~l~~~p~~~~----~~w~v~l~~i~v~~~~~~~~--------~~~~~ 291 (505)
+||.+.. ...|.|+||+.+..++. +++.|+|+... .+|.|++++|+||++.+.+. .+...
T Consensus 154 ~CL~~~~--~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~g 231 (362)
T cd05489 154 LCLPSSP--GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPGG 231 (362)
T ss_pred EEeCCCC--CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCCc
Confidence 9998653 23799999999987764 78999999753 79999999999999987542 23457
Q ss_pred EEEcCCCcCccccHHHHHHHHHHhccccccccchhhhhhchhhHHHHHHhhhccccccCCCCCccccccccccCCCcCCC
Q 010645 292 AIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKIGLCTFDGSRGVSMGIESVVPENNHRAS 371 (505)
Q Consensus 292 aiiDSGtt~~~lP~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (505)
++|||||++++||+++|++|.+++.+. +..+.. .+ .
T Consensus 232 ~iiDSGTs~t~lp~~~y~~l~~a~~~~----------~~~~~~--------------~~--------------~------ 267 (362)
T cd05489 232 VKLSTVVPYTVLRSDIYRAFTQAFAKA----------TARIPR--------------VP--------------A------ 267 (362)
T ss_pred EEEecCCceEEECHHHHHHHHHHHHHH----------hcccCc--------------CC--------------C------
Confidence 999999999999999999999998644 000000 00 0
Q ss_pred CCccCcccchhhhHHHHHHhhhhhhhhHHHHhhhhhccccCCCCCCCceEEcCCCCCCCCcEEEEECC--EEEEeCcccc
Q 010645 372 GGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGG--KIFDLTPDQY 449 (505)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~~--~~~~i~~~~y 449 (505)
..-..++|+.... ...|+....+|+|+|+|+| .++.|+|++|
T Consensus 268 -------------------------------~~~~~~~C~~~~~-----~~~~~~~~~~P~it~~f~g~g~~~~l~~~ny 311 (362)
T cd05489 268 -------------------------------AAVFPELCYPASA-----LGNTRLGYAVPAIDLVLDGGGVNWTIFGANS 311 (362)
T ss_pred -------------------------------CCCCcCccccCCC-----cCCcccccccceEEEEEeCCCeEEEEcCCce
Confidence 0000135664321 1234434689999999965 9999999999
Q ss_pred eeeecCCCCcceEeeeEecccCCCCCCceEeChhhhCceEEEEECCCCeEEEEEc
Q 010645 450 ILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 504 (505)
Q Consensus 450 ~~~~~~~~~~~C~~~i~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfa~a 504 (505)
+++..+ ...|+ +|...+. ..++.||||+.|||++|++||++++|||||++
T Consensus 312 ~~~~~~--~~~Cl-~f~~~~~--~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 312 MVQVKG--GVACL-AFVDGGS--EPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EEEcCC--CcEEE-EEeeCCC--CCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 998653 36896 6765432 12457999999999999999999999999975
No 24
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.88 E-value=5.2e-22 Score=167.67 Aligned_cols=108 Identities=61% Similarity=0.925 Sum_probs=95.0
Q ss_pred EEEEecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCcc-cCCCCCCceeCCceEEEEeccceEEEEEEEEEEEECc
Q 010645 92 GEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKY-RSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGD 170 (505)
Q Consensus 92 ~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C~~~~~C~~~~~y-~~~~SsT~~~~~~~~~~~Y~~gs~~G~~~~D~v~ig~ 170 (505)
++|.||||+|++.|+|||||+++||++..|. ...|..+..| +|+.|++++...+.+.+.|++|++.|.+++|+|+|++
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~-~~~~~~~~~~~~~~~sst~~~~~~~~~~~Y~~g~~~g~~~~D~v~ig~ 79 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ-SLAIYSHSSYDDPSASSTYSDNGCTFSITYGTGSLSGGLSTDTVSIGD 79 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC-CcccccccccCCcCCCCCCCCCCcEEEEEeCCCeEEEEEEEEEEEECC
Confidence 4799999999999999999999999999986 2234445566 9999999999999999999999999999999999999
Q ss_pred eeecCcEEEEEEeeCCccccccccceEEec
Q 010645 171 LVVKDQEFIEATREPSLTFLLAKFDGILGL 200 (505)
Q Consensus 171 ~~~~~~~fg~~~~~~~~~~~~~~~~GIlGL 200 (505)
..++++.||++....+..+.....+|||||
T Consensus 80 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 80 IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEECCEEEEEEEecCCccccccccccccCC
Confidence 999999999999886644445678999998
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.86 E-value=8.9e-21 Score=171.87 Aligned_cols=136 Identities=33% Similarity=0.556 Sum_probs=106.0
Q ss_pred EEEEEEecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCcccCCCCCCceeC----------------------Cce
Q 010645 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKN----------------------GKS 147 (505)
Q Consensus 90 Y~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~----------------------~~~ 147 (505)
|+++|.||||+|++.|++||||+.+|++| ..+.|+|.+|+||+.. .|.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~ 70 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCP 70 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC----------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCccc
Confidence 89999999999999999999999999987 2567888888888752 268
Q ss_pred EEEEeccce-EEEEEEEEEEEECc-----eeecCcEEEEEEeeCCccccccccceEEecccCcccCCCCCcHHHHHHHcC
Q 010645 148 ADIHYGTGA-ISGFFSEDHVKIGD-----LVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQG 221 (505)
Q Consensus 148 ~~~~Y~~gs-~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg 221 (505)
|.+.|++++ +.|.+++|+++++. ..+.++.|||+....+. ....+||||||+...+ ++.||.++
T Consensus 71 y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~---~~~~~GilGLg~~~~S------l~sQl~~~- 140 (164)
T PF14543_consen 71 YSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGL---FYGADGILGLGRGPLS------LPSQLASS- 140 (164)
T ss_dssp EEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTS---STTEEEEEE-SSSTTS------HHHHHHHH-
T ss_pred ceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccC---CcCCCcccccCCCccc------HHHHHHHh-
Confidence 999999887 79999999999986 45788999999887643 2278999999988776 88899888
Q ss_pred CCCCCEEEEEecCCCCCCCCcEEEECC
Q 010645 222 LVNEPVFSFWFNRNADEEEGGEIVFGG 248 (505)
Q Consensus 222 ~i~~~~FSl~l~~~~~~~~~G~L~fGg 248 (505)
..++||+||.+ .+....|.|+||+
T Consensus 141 --~~~~FSyCL~~-~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 141 --SGNKFSYCLPS-SSPSSSGFLSFGD 164 (164)
T ss_dssp ----SEEEEEB-S--SSSSEEEEEECS
T ss_pred --cCCeEEEECCC-CCCCCCEEEEeCc
Confidence 56899999988 2234589999995
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.76 E-value=7.5e-18 Score=152.52 Aligned_cols=153 Identities=24% Similarity=0.433 Sum_probs=104.2
Q ss_pred eeEEEeceEEECCeEeeeecC-------CceEEEcCCCcCccccHHHHHHHHHHhccccccccchhhhhhchhhHHHHHH
Q 010645 268 YWQFDMGDVMIDGQTTGFCAG-------GCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINML 340 (505)
Q Consensus 268 ~w~v~l~~i~v~~~~~~~~~~-------~~~aiiDSGtt~~~lP~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 340 (505)
+|.|++.+|+|+++.+.+... ...++|||||++++||+++|++|.+++.+. +...
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~----------~~~~-------- 62 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQ----------MGAP-------- 62 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHH----------HHTC--------
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHH----------hhhc--------
Confidence 478999999999999876544 467999999999999999999999998554 0000
Q ss_pred hhhccccccCCCCCccccccccccCCCcCCCCCccCcccchhhhHHHHHHhhhhhhhhHHHHhhhhhccccCCCCCCCce
Q 010645 341 LAKIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGES 420 (505)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 420 (505)
++... .-.....++||+.+...
T Consensus 63 -----------------~~~~~--------------------------------------~~~~~~~~~Cy~~~~~~--- 84 (161)
T PF14541_consen 63 -----------------GVSRE--------------------------------------APPFSGFDLCYNLSSFG--- 84 (161)
T ss_dssp -----------------T--CE--------------------------------------E---TT-S-EEEGGCS----
T ss_pred -----------------ccccc--------------------------------------cccCCCCCceeeccccc---
Confidence 00000 00011346788765421
Q ss_pred EEcCCCCCCCCcEEEEEC-CEEEEeCcccceeeecCCCCcceEeeeEecccCCCCCCceEeChhhhCceEEEEECCCCeE
Q 010645 421 AVDCSRLSSLPIVSFTIG-GKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRV 499 (505)
Q Consensus 421 ~~~C~~~~~~P~l~f~~~-~~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~i 499 (505)
.+ .....+|+|+|+|. |..++|+|++|++...++ ..|+. |...+ ....+..|||+.+|++++++||++++||
T Consensus 85 -~~-~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~--~~Cla-~~~~~--~~~~~~~viG~~~~~~~~v~fDl~~~~i 157 (161)
T PF14541_consen 85 -VN-RDWAKFPTITLHFEGGADLTLPPENYFVQVSPG--VFCLA-FVPSD--ADDDGVSVIGNFQQQNYHVVFDLENGRI 157 (161)
T ss_dssp -EE-TTEESS--EEEEETTSEEEEE-HHHHEEEECTT--EEEES-EEEET--STTSSSEEE-HHHCCTEEEEEETTTTEE
T ss_pred -cc-cccccCCeEEEEEeCCcceeeeccceeeeccCC--CEEEE-EEccC--CCCCCcEEECHHHhcCcEEEEECCCCEE
Confidence 11 12247999999996 899999999999987643 78986 44331 2344679999999999999999999999
Q ss_pred EEEE
Q 010645 500 GFAE 503 (505)
Q Consensus 500 Gfa~ 503 (505)
||+|
T Consensus 158 gF~~ 161 (161)
T PF14541_consen 158 GFAP 161 (161)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9997
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.05 E-value=1.4e-05 Score=65.06 Aligned_cols=92 Identities=17% Similarity=0.305 Sum_probs=65.8
Q ss_pred eEEEEEEecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCcccCCCCCCceeCCceEEEEeccce-EEEEEEEEEEE
Q 010645 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA-ISGFFSEDHVK 167 (505)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs-~~G~~~~D~v~ 167 (505)
.|++++.|| ++++++++|||++.+|+...... .+.. . ........+...+|. .......+.++
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~---~l~~----------~-~~~~~~~~~~~~~G~~~~~~~~~~~i~ 65 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAE---RLGL----------P-LTLGGKVTVQTANGRVRAARVRLDSLQ 65 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH---HcCC----------C-ccCCCcEEEEecCCCccceEEEcceEE
Confidence 589999999 69999999999999999764221 1110 0 112334556677777 44556689999
Q ss_pred ECceeecCcEEEEEEeeCCccccccccceEEeccc
Q 010645 168 IGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 202 (505)
Q Consensus 168 ig~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~ 202 (505)
+|+..++++.+.++..... ..+||||+.+
T Consensus 66 ig~~~~~~~~~~v~d~~~~------~~~gIlG~d~ 94 (96)
T cd05483 66 IGGITLRNVPAVVLPGDAL------GVDGLLGMDF 94 (96)
T ss_pred ECCcEEeccEEEEeCCccc------CCceEeChHH
Confidence 9999999998887754321 4699999863
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.43 E-value=0.00091 Score=57.20 Aligned_cols=101 Identities=22% Similarity=0.358 Sum_probs=67.1
Q ss_pred EeceeccCceEEEEEEecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCcccCCCCCCceeCCceEEEEeccceE-E
Q 010645 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAI-S 158 (505)
Q Consensus 80 ~pl~n~~~~~Y~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs~-~ 158 (505)
+++.-..++.|++++.|. ++++.+++|||++.+.+....-. .-..++.. ......+.-+.|.. .
T Consensus 2 ~~i~~~~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~-------~Lgl~~~~------~~~~~~~~ta~G~~~~ 66 (121)
T TIGR02281 2 VQLAKDGDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQ-------RLGLDLNR------LGYTVTVSTANGQIKA 66 (121)
T ss_pred EEEEEcCCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH-------HcCCCccc------CCceEEEEeCCCcEEE
Confidence 456666688999999997 68999999999999987643210 00111110 12233444455664 3
Q ss_pred EEEEEEEEEECceeecCcEEEEEEeeCCccccccccceEEeccc
Q 010645 159 GFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 202 (505)
Q Consensus 159 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~ 202 (505)
..+.-|.+++|+..+.|..+.++.... ..+|+||+.+
T Consensus 67 ~~~~l~~l~iG~~~~~nv~~~v~~~~~-------~~~~LLGm~f 103 (121)
T TIGR02281 67 ARVTLDRVAIGGIVVNDVDAMVAEGGA-------LSESLLGMSF 103 (121)
T ss_pred EEEEeCEEEECCEEEeCcEEEEeCCCc-------CCceEcCHHH
Confidence 456889999999999999977764221 1279999963
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.77 E-value=0.0079 Score=47.93 Aligned_cols=88 Identities=18% Similarity=0.233 Sum_probs=54.0
Q ss_pred EEEEecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCcccCCCCCCceeCCceEEEEeccce-EEEEEEEEEEEECc
Q 010645 92 GEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA-ISGFFSEDHVKIGD 170 (505)
Q Consensus 92 ~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs-~~G~~~~D~v~ig~ 170 (505)
+++.|+ ++++++++|||++.+.+....+. .-...+. .......+.-.+|. .......+.+++|+
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~-------~l~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~i~ig~ 65 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAK-------KLGLKPR------PKSVPISVSGAGGSVTVYRGRVDSITIGG 65 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHH-------HcCCCCc------CCceeEEEEeCCCCEEEEEEEEEEEEECC
Confidence 367787 58999999999998877643321 0001110 01112333334444 33455666899999
Q ss_pred eeecCcEEEEEEeeCCccccccccceEEecc
Q 010645 171 LVVKDQEFIEATREPSLTFLLAKFDGILGLG 201 (505)
Q Consensus 171 ~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg 201 (505)
..+.+..+.+... ....+||||+-
T Consensus 66 ~~~~~~~~~v~~~-------~~~~~~iLG~d 89 (90)
T PF13650_consen 66 ITLKNVPFLVVDL-------GDPIDGILGMD 89 (90)
T ss_pred EEEEeEEEEEECC-------CCCCEEEeCCc
Confidence 9988888766651 23558999974
No 30
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=96.49 E-value=0.035 Score=55.53 Aligned_cols=197 Identities=20% Similarity=0.217 Sum_probs=105.7
Q ss_pred EEEEEEecCCC----ceEE-EEecCCCCceeeeCCCCCCCcccCCCCcccCCCCCCceeCCceEEEEeccceEEEEEEEE
Q 010645 90 YFGEIGIGTPP----QNFT-VIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSED 164 (505)
Q Consensus 90 Y~~~i~iGtP~----Q~~~-l~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs~~G~~~~D 164 (505)
=++.|+|=.|+ |++. +++||||.-+=|....-... -........+.. ..-.-...|++|..-|-+.+.
T Consensus 24 p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl~~~----l~~~Lp~~t~~g---~~laEC~~F~sgytWGsVr~A 96 (370)
T PF11925_consen 24 PTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASALPSS----LAGSLPQQTGGG---APLAECAQFASGYTWGSVRTA 96 (370)
T ss_pred eeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhhchh----hhccCCcccCCC---cchhhhhhccCcccccceEEE
Confidence 45666765443 6664 99999999887765432100 000111111110 011122467888888999999
Q ss_pred EEEECceeecCcEEEEEEeeC-----------C---ccccccccceEEecccCcccC----------------CCC---C
Q 010645 165 HVKIGDLVVKDQEFIEATREP-----------S---LTFLLAKFDGILGLGFQEISV----------------GKA---V 211 (505)
Q Consensus 165 ~v~ig~~~~~~~~fg~~~~~~-----------~---~~~~~~~~~GIlGLg~~~~s~----------------~~~---~ 211 (505)
+|+||+....+..+.++.+.. + .......+.||||+|.-.... ... .
T Consensus 97 dV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~~DcG~~C~~sa~~~~YY~C~~~~sCt 176 (370)
T PF11925_consen 97 DVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFPYDCGAACAQSALPGNYYSCPSGGSCT 176 (370)
T ss_pred EEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCccccCchhhcccCCCceEECCCCCCee
Confidence 999999877677766654320 0 112245789999998653221 000 0
Q ss_pred cHHHHHHHcCCCCCCEEEEEecCC---------C---CCCCCcEEEECCccCC-C-cccceEEEecCCcceeEEEeceEE
Q 010645 212 PVWYNMVNQGLVNEPVFSFWFNRN---------A---DEEEGGEIVFGGMDPD-H-YKGEHTYVPVTQKGYWQFDMGDVM 277 (505)
Q Consensus 212 ~~~~~L~~qg~i~~~~FSl~l~~~---------~---~~~~~G~L~fGgid~~-~-~~g~l~~~p~~~~~~w~v~l~~i~ 277 (505)
+.-..+-+| +..|+..|-.+.+ + .....|.|+||=--.+ . ..+.....+....++... .
T Consensus 177 ~t~v~~~~Q--V~NPV~~Fa~DNNGvii~lP~v~~~Ga~SatG~LiFGIgTQsNN~l~~~~~~~~~~~~G~~tt-----~ 249 (370)
T PF11925_consen 177 STTVPLAQQ--VANPVARFATDNNGVIIQLPAVSASGAASATGTLIFGIGTQSNNALPSGATVLTTDSNGDFTT-----T 249 (370)
T ss_pred cccchhhhc--ccCcccccCccCCeEEEecCCCCCCCCccceEEEEEecCCcccCcccccceEEeecCCceEEE-----E
Confidence 111112223 4456655532221 1 2335799999932222 1 222245556666665432 2
Q ss_pred ECCeEeeeecCCceEEEcCCCcCccccHH
Q 010645 278 IDGQTTGFCAGGCAAIADSGTSLLAGPTT 306 (505)
Q Consensus 278 v~~~~~~~~~~~~~aiiDSGtt~~~lP~~ 306 (505)
++|.... ...||||+.-.++|..
T Consensus 250 ~~G~t~~------~sf~DSGSNg~fF~d~ 272 (370)
T PF11925_consen 250 FNGQTYS------ASFFDSGSNGYFFPDS 272 (370)
T ss_pred ecCceee------eeeEecCCceeeccCC
Confidence 3343331 2499999999999853
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.74 E-value=0.065 Score=45.95 Aligned_cols=91 Identities=21% Similarity=0.261 Sum_probs=58.0
Q ss_pred cCceEEEEEEecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCcccCCCCCCceeCCceEE-EEeccce--EEEEEE
Q 010645 86 MDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD-IHYGTGA--ISGFFS 162 (505)
Q Consensus 86 ~~~~Y~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~-~~Y~~gs--~~G~~~ 162 (505)
....+++++.|+ ++++.+++|||++..++....+. .+.-. ... ...+. ...+.|. ..|...
T Consensus 13 ~~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a~---~lgl~----~~~-------~~~~~~~~~g~g~~~~~g~~~ 76 (124)
T cd05479 13 KVPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACAE---KCGLM----RLI-------DKRFQGIAKGVGTQKILGRIH 76 (124)
T ss_pred eeeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHHH---HcCCc----ccc-------CcceEEEEecCCCcEEEeEEE
Confidence 345689999999 68999999999999988643221 11111 000 11121 1233232 567777
Q ss_pred EEEEEECceeecCcEEEEEEeeCCccccccccceEEecc
Q 010645 163 EDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLG 201 (505)
Q Consensus 163 ~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg 201 (505)
.+.+.+++...+ ..|.+... ...++|||+-
T Consensus 77 ~~~l~i~~~~~~-~~~~Vl~~--------~~~d~ILG~d 106 (124)
T cd05479 77 LAQVKIGNLFLP-CSFTVLED--------DDVDFLIGLD 106 (124)
T ss_pred EEEEEECCEEee-eEEEEECC--------CCcCEEecHH
Confidence 889999998865 66655422 2568999995
No 32
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=95.56 E-value=0.13 Score=47.32 Aligned_cols=92 Identities=15% Similarity=0.195 Sum_probs=68.2
Q ss_pred CCccEEeceeccCceEEEEEEecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCcccCCCCCCceeCCceEEEEecc
Q 010645 75 GDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGT 154 (505)
Q Consensus 75 ~~~~~~pl~n~~~~~Y~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~ 154 (505)
++...+.|....++.|+++..|- +|++.+++|||-+.+.+...+-. .-.++.+. .+.++.+.-.+
T Consensus 91 ~g~~~v~Lak~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~-------RlGid~~~------l~y~~~v~TAN 155 (215)
T COG3577 91 DGYQEVSLAKSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDAR-------RLGIDLNS------LDYTITVSTAN 155 (215)
T ss_pred CCceEEEEEecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHH-------HhCCCccc------cCCceEEEccC
Confidence 35567888888899999999998 79999999999999888754321 12344321 24456666778
Q ss_pred ceEE-EEEEEEEEEECceeecCcEEEEE
Q 010645 155 GAIS-GFFSEDHVKIGDLVVKDQEFIEA 181 (505)
Q Consensus 155 gs~~-G~~~~D~v~ig~~~~~~~~fg~~ 181 (505)
|... ..+-.|.|.||+..+.|+.--++
T Consensus 156 G~~~AA~V~Ld~v~IG~I~~~nV~A~V~ 183 (215)
T COG3577 156 GRARAAPVTLDRVQIGGIRVKNVDAMVA 183 (215)
T ss_pred CccccceEEeeeEEEccEEEcCchhhee
Confidence 8754 46788999999999988774444
No 33
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=95.44 E-value=0.0086 Score=39.93 Aligned_cols=38 Identities=32% Similarity=0.675 Sum_probs=34.8
Q ss_pred cccchhhhHHHHHHhhhhhhhhHHHHhhhhhccccCCC
Q 010645 377 AMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLP 414 (505)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 414 (505)
..|..|...+.+.++.|+.+.|+++|..++.+.|..+|
T Consensus 2 ~~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lP 39 (39)
T PF05184_consen 2 DECDICKFVVKEIEKLLKNNKTEEEIKKALEKACNKLP 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHTTSC
T ss_pred CcchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhhCc
Confidence 36899999999999999999999999999999998654
No 34
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=94.52 E-value=0.2 Score=40.17 Aligned_cols=75 Identities=13% Similarity=0.054 Sum_probs=47.4
Q ss_pred EEEEEEecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCcccCCCCCCceeCCceEEEEeccce---EEEEEEEEEE
Q 010645 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA---ISGFFSEDHV 166 (505)
Q Consensus 90 Y~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs---~~G~~~~D~v 166 (505)
|++.+.|+ ++++.+++||||+..++....+. ....+. .......+.-.+|. ..|.. .+.+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~~~--------~lg~~~------~~~~~~~v~~a~G~~~~~~G~~-~~~v 63 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKTWR--------KLGSPP------LKPTKKRLRTATGTKLSVLGQI-LVTV 63 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHHHH--------HhCCCc------cccccEEEEecCCCEeeEeEEE-EEEE
Confidence 57889999 69999999999999999764431 011110 11123334434444 46766 8999
Q ss_pred EECceeecCcEEEEEE
Q 010645 167 KIGDLVVKDQEFIEAT 182 (505)
Q Consensus 167 ~ig~~~~~~~~fg~~~ 182 (505)
++++... ...|-+..
T Consensus 64 ~~~~~~~-~~~~~v~~ 78 (91)
T cd05484 64 KYGGKTK-VLTLYVVK 78 (91)
T ss_pred EECCEEE-EEEEEEEE
Confidence 9999773 35554443
No 35
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.31 E-value=0.45 Score=40.71 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=22.5
Q ss_pred ceEeChhhhCceEEEEECCCCeEEE
Q 010645 477 LWILGDVFMGPYHTVFDYSNMRVGF 501 (505)
Q Consensus 477 ~~ILG~~fl~~~y~vfD~~~~~iGf 501 (505)
..|||..||+.+-.+.|+.+.+|-|
T Consensus 100 d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 100 DFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CEEecHHHHHhCCeEEECCCCEEEC
Confidence 5799999999999999999998753
No 36
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=93.01 E-value=0.51 Score=37.50 Aligned_cols=81 Identities=19% Similarity=0.160 Sum_probs=47.7
Q ss_pred EEEecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCcccCCCCCCceeCCceEEEEeccceEEEEE-EEE-EEEECc
Q 010645 93 EIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFF-SED-HVKIGD 170 (505)
Q Consensus 93 ~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs~~G~~-~~D-~v~ig~ 170 (505)
.+.|. ++++++++|||++.+-+....+. .. ....+...+.=.+|.....+ ..+ .+.+|+
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~a~---~~--------------~~~~~~~~v~gagG~~~~~v~~~~~~v~vg~ 62 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDLGP---KQ--------------ELSTTSVLIRGVSGQSQQPVTTYRTLVDLGG 62 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHHhh---hc--------------cCCCCcEEEEeCCCcccccEEEeeeEEEECC
Confidence 45666 69999999999999999765442 00 01123333433444321111 123 699999
Q ss_pred eeecCcEEEEEEeeCCccccccccceEEeccc
Q 010645 171 LVVKDQEFIEATREPSLTFLLAKFDGILGLGF 202 (505)
Q Consensus 171 ~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~ 202 (505)
....+ .|.+.... .++|||+-+
T Consensus 63 ~~~~~-~~~v~~~~---------~~~lLG~df 84 (86)
T cd06095 63 HTVSH-SFLVVPNC---------PDPLLGRDL 84 (86)
T ss_pred EEEEE-EEEEEcCC---------CCcEechhh
Confidence 98875 44443211 278999854
No 37
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=92.52 E-value=0.3 Score=42.53 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=24.7
Q ss_pred ceEeChhhhCceEEEEECCCCeEEEEE
Q 010645 477 LWILGDVFMGPYHTVFDYSNMRVGFAE 503 (505)
Q Consensus 477 ~~ILG~~fl~~~y~vfD~~~~~iGfa~ 503 (505)
..|||.++|+.+...-|+.+++|-|-.
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeC
Confidence 479999999999999999999998864
No 38
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=92.29 E-value=4 Score=34.68 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=27.9
Q ss_pred CcceeEEEeceEEECCeEeeeecCCceEEEcCCCcCccccHHHHHHH
Q 010645 265 QKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (505)
Q Consensus 265 ~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l 311 (505)
..+++.+. +.++|..+ .++||||++.+.++.+..+++
T Consensus 8 ~~g~~~v~---~~InG~~~-------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 8 GDGHFYAT---GRVNGRNV-------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCCeEEEE---EEECCEEE-------EEEEECCCCcEEcCHHHHHHc
Confidence 44555544 46777744 589999999999999888765
No 39
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=87.65 E-value=3 Score=34.66 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.2
Q ss_pred ceEeChhhhCceEEEEECCCCeE
Q 010645 477 LWILGDVFMGPYHTVFDYSNMRV 499 (505)
Q Consensus 477 ~~ILG~~fl~~~y~vfD~~~~~i 499 (505)
..+||..||+.+-++.|+.++++
T Consensus 85 ~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 85 EPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred ccEecHHHHhhCCEEEehhhCcC
Confidence 57999999999999999987753
No 40
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=85.65 E-value=1.3 Score=33.92 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=28.4
Q ss_pred CceEEEEEEecCCCceEEEEecCCCCceeeeCCCC
Q 010645 87 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC 121 (505)
Q Consensus 87 ~~~Y~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C 121 (505)
...+++++.|| ++.+.+++|||++...++...+
T Consensus 6 ~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 6 PGLMYVPVSIG--GVQVKALVDTGATHNFISESLA 38 (72)
T ss_pred CCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHH
Confidence 56799999999 5999999999999998876543
No 41
>PF13650 Asp_protease_2: Aspartyl protease
Probab=77.69 E-value=3.1 Score=32.55 Aligned_cols=29 Identities=17% Similarity=0.387 Sum_probs=23.6
Q ss_pred EEECCeEeeeecCCceEEEcCCCcCccccHHHHHHH
Q 010645 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (505)
Q Consensus 276 i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l 311 (505)
+.++|+.+ .++||||++.+.++++.++++
T Consensus 3 v~vng~~~-------~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-------RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-------EEEEcCCCCcEEECHHHHHHc
Confidence 46676644 589999999999999888776
No 42
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=76.09 E-value=4.9 Score=30.60 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=24.3
Q ss_pred EEECCeEeeeecCCceEEEcCCCcCccccHHHHHHH
Q 010645 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (505)
Q Consensus 276 i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l 311 (505)
+.+++..+ .+++|||++-.+++.+.+++|
T Consensus 13 ~~I~g~~~-------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQV-------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEE-------EEEEeCCCcceecCHHHHHHh
Confidence 46677655 489999999999999998887
No 43
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=75.54 E-value=3.5 Score=33.40 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=23.8
Q ss_pred EEEEEecCCCceEEEEecCCCCceeeeCCCC
Q 010645 91 FGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC 121 (505)
Q Consensus 91 ~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C 121 (505)
+.+|.|. ++++.+++||||+.+-++...+
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGGS
T ss_pred eEEEeEC--CEEEEEEEecCCCcceeccccc
Confidence 5678888 5899999999999988876543
No 44
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=72.41 E-value=7.9 Score=34.51 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=20.8
Q ss_pred CceEEEcCCCcCccccHHHHHHHH
Q 010645 289 GCAAIADSGTSLLAGPTTIITQVN 312 (505)
Q Consensus 289 ~~~aiiDSGtt~~~lP~~~~~~l~ 312 (505)
...+++|||++..++..++.++|.
T Consensus 45 ~i~vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 45 PIKVLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred EEEEEEeCCCccceeehhhHHhhC
Confidence 456999999999999999888774
No 45
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=72.00 E-value=5.5 Score=31.70 Aligned_cols=30 Identities=10% Similarity=0.275 Sum_probs=24.9
Q ss_pred eEEECCeEeeeecCCceEEEcCCCcCccccHHHHHHH
Q 010645 275 DVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (505)
Q Consensus 275 ~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l 311 (505)
.+.|+|+.+ .++||||++.+.++.+.+.++
T Consensus 4 ~~~Ing~~i-------~~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPL-------KFQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEE-------EEEEcCCcceEEeCHHHHHHh
Confidence 356777766 489999999999999988876
No 46
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=69.91 E-value=15 Score=31.48 Aligned_cols=91 Identities=23% Similarity=0.315 Sum_probs=50.1
Q ss_pred CceEEEEEEecCCCceEEEEecCCCCceeeeCCCCCCCcccCCCCcccCCCCCCceeCCceEEEEeccce--EEEEEEEE
Q 010645 87 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA--ISGFFSED 164 (505)
Q Consensus 87 ~~~Y~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs--~~G~~~~D 164 (505)
....|++++|+ ++++++++|||...+-+... |. ..|+-...-+. ..-...+|-|. +.|.+..-
T Consensus 22 v~mLyI~~~in--g~~vkA~VDtGAQ~tims~~-~a--~r~gL~~lid~----------r~~g~a~GvG~~~i~G~Ih~~ 86 (124)
T PF09668_consen 22 VSMLYINCKIN--GVPVKAFVDTGAQSTIMSKS-CA--ERCGLMRLIDK----------RFAGVAKGVGTQKILGRIHSV 86 (124)
T ss_dssp ----EEEEEET--TEEEEEEEETT-SS-EEEHH-HH--HHTTGGGGEEG----------GG-EE-------EEEEEEEEE
T ss_pred cceEEEEEEEC--CEEEEEEEeCCCCccccCHH-HH--HHcCChhhccc----------cccccccCCCcCceeEEEEEE
Confidence 34689999999 69999999999998887543 32 34543221111 01122344454 77999989
Q ss_pred EEEECceeecCcEEEEEEeeCCccccccccceEEecc
Q 010645 165 HVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLG 201 (505)
Q Consensus 165 ~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg 201 (505)
.+.+|+..++ ..|-+... ...+=+|||-
T Consensus 87 ~l~ig~~~~~-~s~~Vle~--------~~~d~llGld 114 (124)
T PF09668_consen 87 QLKIGGLFFP-CSFTVLED--------QDVDLLLGLD 114 (124)
T ss_dssp EEEETTEEEE-EEEEEETT--------SSSSEEEEHH
T ss_pred EEEECCEEEE-EEEEEeCC--------CCcceeeeHH
Confidence 9999986654 44444431 2335677773
No 47
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=69.09 E-value=3.9 Score=33.18 Aligned_cols=24 Identities=17% Similarity=0.008 Sum_probs=10.1
Q ss_pred CCcchHHHHHHHHHHHhhhhhhcC
Q 010645 3 MVFKSITAGFFLCLLLFPVVFSTP 26 (505)
Q Consensus 3 m~~~~~~~~~~l~~l~~~~~~a~~ 26 (505)
|++..++++.++|+++|+++++++
T Consensus 1 MaSK~~llL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVA 24 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhh
Confidence 555444443334444444433333
No 48
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=68.20 E-value=8 Score=30.55 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=23.0
Q ss_pred EEECCeEeeeecCCceEEEcCCCcCccccHHHHHHH
Q 010645 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (505)
Q Consensus 276 i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l 311 (505)
+.+++..+ .++||||++.+.++.+..+++
T Consensus 7 v~i~~~~~-------~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 7 VTINGQPV-------RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEECCEEE-------EEEEECCCCcEEcCHHHHHHc
Confidence 46666544 589999999999999877765
No 49
>PF07966 A1_Propeptide: A1 Propeptide ; InterPro: IPR012848 Most eukaryotic endopeptidases (MEROPS peptidase family A1) are synthesised with signal and propeptides. The animal pepsin-like endopeptidase propeptides form a distinct family of propeptides, which contain a conserved motif approximately 30 residues long. In pepsinogen A, the first 11 residues of the mature pepsin sequence are displaced by residues of the propeptide. The propeptide contains two helices that block the active site cleft, in particular the conserved Asp11 residue, in pepsin, hydrogen bonds to a conserved Arg residue in the propeptide. This hydrogen bond stabilises the propeptide conformation and is probably responsible for triggering the conversion of pepsinogen to pepsin under acidic conditions [, ]. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1AVF_Q 1HTR_P 3PSG_A 2PSG_A 3VCM_Q 1TZS_P.
Probab=67.13 E-value=3.3 Score=25.57 Aligned_cols=24 Identities=29% Similarity=0.062 Sum_probs=15.9
Q ss_pred eEEeeeeecccchhhhhhhccccc
Q 010645 30 LYRIGLKKRKFDLNNRVAARLDSK 53 (505)
Q Consensus 30 ~~~ipl~~~~~~~~~~~~~~~~~~ 53 (505)
++||||.|.++.++...+.+....
T Consensus 1 l~rIPL~K~kS~R~~L~e~g~~~~ 24 (29)
T PF07966_consen 1 LVRIPLKKFKSMRETLREKGTLEE 24 (29)
T ss_dssp -EEEEEEE---HHHHHHHTT-HHH
T ss_pred CEEEeccCCchHHHHHHHcCchHH
Confidence 479999999999998888777654
No 50
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=63.02 E-value=9.1 Score=30.18 Aligned_cols=29 Identities=10% Similarity=0.226 Sum_probs=24.0
Q ss_pred EEECCeEeeeecCCceEEEcCCCcCccccHHHHHHH
Q 010645 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (505)
Q Consensus 276 i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l 311 (505)
+.+||..+ .+++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~-------~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI-------VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE-------EEEEECCCCeEEECHHHhhhc
Confidence 46677655 479999999999999988875
No 51
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=61.32 E-value=10 Score=30.22 Aligned_cols=27 Identities=19% Similarity=0.269 Sum_probs=22.1
Q ss_pred EEEecCCCceEEEEecCCCCceeeeCCCC
Q 010645 93 EIGIGTPPQNFTVIFDTGSSNLWVPSSKC 121 (505)
Q Consensus 93 ~i~iGtP~Q~~~l~lDTGSs~~Wv~~~~C 121 (505)
.+.|+ +|.+.+++|||+.++-+...+.
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~~~ 28 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAENDW 28 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccccc
Confidence 45666 6999999999999999976443
No 52
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=56.24 E-value=20 Score=33.30 Aligned_cols=49 Identities=27% Similarity=0.387 Sum_probs=31.2
Q ss_pred CCcEEEEECCEEEEeCcccceeeecCCCCcceEeeeEecccCCCCCCceEeChhhhCceEEEEECCCCeEEE
Q 010645 430 LPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGF 501 (505)
Q Consensus 430 ~P~l~f~~~~~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~iGf 501 (505)
.+.+.+.+++..|.+|- +++. +.+-..|||.+|+|.|+=....+ .+|-|
T Consensus 67 ~~~~~i~I~~~~F~IP~---iYq~-------------------~~g~d~IlG~NF~r~y~Pfiq~~-~~I~f 115 (201)
T PF02160_consen 67 AKNGKIQIADKIFRIPT---IYQQ-------------------ESGIDIILGNNFLRLYEPFIQTE-DRIQF 115 (201)
T ss_pred ecCceEEEccEEEeccE---EEEe-------------------cCCCCEEecchHHHhcCCcEEEc-cEEEE
Confidence 45778888888887752 2221 12335899999999887555554 34544
No 53
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=48.94 E-value=15 Score=27.44 Aligned_cols=37 Identities=38% Similarity=0.768 Sum_probs=34.6
Q ss_pred ccchhhhHHHHHHhhhhhhhhHHHHhhhhhccccCCC
Q 010645 378 MCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLP 414 (505)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 414 (505)
.|..|...+...+..+..+.+.+.+.+++.+.|..++
T Consensus 2 ~C~~C~~~v~~~~~~~~~~~~~~~i~~~~~~~C~~~~ 38 (76)
T smart00741 2 LCELCEDVVKQLENLLKDNKTEEEIKKALEKVCKKLP 38 (76)
T ss_pred cChHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcC
Confidence 5889999999999999999999999999999999876
No 54
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=46.30 E-value=22 Score=28.59 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=19.9
Q ss_pred ceEEEcCCCcCccccHHHHHHHH
Q 010645 290 CAAIADSGTSLLAGPTTIITQVN 312 (505)
Q Consensus 290 ~~aiiDSGtt~~~lP~~~~~~l~ 312 (505)
..+.+|||++...+|...++.+-
T Consensus 11 v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 11 VKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEEecCCEEEeccHHHHhhhc
Confidence 35899999999999998888764
No 55
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=46.27 E-value=20 Score=28.85 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=20.7
Q ss_pred eEEECCeEeeeecCCceEEEcCCCcCccccHHHH
Q 010645 275 DVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTII 308 (505)
Q Consensus 275 ~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~ 308 (505)
.|.+++..+ .++||||+..+.++.+.+
T Consensus 9 ~v~i~g~~i-------~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 9 TVKINGKKI-------KALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEETTEEE-------EEEEETTBSSEEESSGGS
T ss_pred EEeECCEEE-------EEEEecCCCcceeccccc
Confidence 356666655 589999999999997643
No 56
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=44.35 E-value=29 Score=29.67 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=23.0
Q ss_pred eEEECCeEeeeecCCceEEEcCCCcCccccHHHHHHH
Q 010645 275 DVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (505)
Q Consensus 275 ~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l 311 (505)
.+++||..+ .|+||||+..+.++.+.++++
T Consensus 28 ~~~ing~~v-------kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPV-------KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEE-------EEEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEE-------EEEEeCCCCccccCHHHHHHc
Confidence 457788766 499999999999999888874
No 57
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=42.11 E-value=32 Score=30.81 Aligned_cols=29 Identities=21% Similarity=0.391 Sum_probs=22.7
Q ss_pred EEEEEecCCCceEEEEecCCCCceeeeCC
Q 010645 91 FGEIGIGTPPQNFTVIFDTGSSNLWVPSS 119 (505)
Q Consensus 91 ~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~~ 119 (505)
...+.++.-+.++.++|||||+.-.+...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 44555666679999999999999888653
No 58
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=41.76 E-value=1.6e+02 Score=25.35 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=24.1
Q ss_pred ceEEEEEEecCCCceEEEEecCCCCceeeeC
Q 010645 88 AQYFGEIGIGTPPQNFTVIFDTGSSNLWVPS 118 (505)
Q Consensus 88 ~~Y~~~i~iGtP~Q~~~l~lDTGSs~~Wv~~ 118 (505)
..-.+.+.|.+ ++..+++|+|++...|..
T Consensus 20 ~vi~g~~~I~~--~~~~vLiDSGAThsFIs~ 48 (135)
T PF08284_consen 20 DVITGTFLINS--IPASVLIDSGATHSFISS 48 (135)
T ss_pred CeEEEEEEecc--EEEEEEEecCCCcEEccH
Confidence 34677888885 999999999999988864
No 59
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=40.00 E-value=41 Score=31.29 Aligned_cols=36 Identities=14% Similarity=0.273 Sum_probs=28.4
Q ss_pred cceeEEEeceEEECCeEeeeecCCceEEEcCCCcCccccHHHHHHH
Q 010645 266 KGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (505)
Q Consensus 266 ~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l 311 (505)
+|+|.+ ...|||+.+. .+||||.|.+.++++..+++
T Consensus 103 ~GHF~a---~~~VNGk~v~-------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 103 DGHFEA---NGRVNGKKVD-------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCcEEE---EEEECCEEEE-------EEEecCcceeecCHHHHHHh
Confidence 455543 4578888775 79999999999999888776
No 60
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=39.60 E-value=18 Score=30.71 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=18.9
Q ss_pred eEEEcCCCc-CccccHHHHHHHH
Q 010645 291 AAIADSGTS-LLAGPTTIITQVN 312 (505)
Q Consensus 291 ~aiiDSGtt-~~~lP~~~~~~l~ 312 (505)
..+||||.+ ++.+|.++++++-
T Consensus 28 ~~LiDTGFtg~lvlp~~vaek~~ 50 (125)
T COG5550 28 DELIDTGFTGYLVLPPQVAEKLG 50 (125)
T ss_pred eeEEecCCceeEEeCHHHHHhcC
Confidence 358999999 9999999988763
No 61
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=39.18 E-value=19 Score=22.90 Aligned_cols=20 Identities=50% Similarity=0.891 Sum_probs=16.9
Q ss_pred cchhhhhhchhhHHHHHHhh
Q 010645 323 QECKAVVSQYGEEIINMLLA 342 (505)
Q Consensus 323 ~~~~~~~~~y~~~~~~~~~~ 342 (505)
..|+.++++|+..+++.+..
T Consensus 2 ~~C~~~V~~y~~~ii~~l~~ 21 (35)
T PF03489_consen 2 DECKNFVDQYGPQIIQLLEK 21 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHh
Confidence 46999999999999988654
No 62
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=28.89 E-value=60 Score=26.78 Aligned_cols=66 Identities=15% Similarity=0.237 Sum_probs=39.9
Q ss_pred EEEEecCCCc----eEEEEecCCCCcee-eeCCCCCCCcccCCCCcccCCCCCCceeCCceEEEEeccce-EEEEEEEEE
Q 010645 92 GEIGIGTPPQ----NFTVIFDTGSSNLW-VPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA-ISGFFSEDH 165 (505)
Q Consensus 92 ~~i~iGtP~Q----~~~l~lDTGSs~~W-v~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs-~~G~~~~D~ 165 (505)
+++.|..|.| ++.+++|||.+..- ++...-. .-...+. ......-++|. ..-....++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~a~-------~lgl~~~---------~~~~~~tA~G~~~~~~v~~~~ 65 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPPDIVN-------KLGLPEL---------DQRRVYLADGREVLTDVAKAS 65 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCHHHHH-------HcCCCcc---------cCcEEEecCCcEEEEEEEEEE
Confidence 5788888732 67899999998764 4432110 0011111 12244456665 556678899
Q ss_pred EEECceee
Q 010645 166 VKIGDLVV 173 (505)
Q Consensus 166 v~ig~~~~ 173 (505)
+.+++...
T Consensus 66 v~igg~~~ 73 (107)
T TIGR03698 66 IIINGLEI 73 (107)
T ss_pred EEECCEEE
Confidence 99998765
No 63
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=28.46 E-value=1.4e+02 Score=28.98 Aligned_cols=19 Identities=26% Similarity=0.177 Sum_probs=12.6
Q ss_pred CccEEeceeccCceEEEEE
Q 010645 76 DADIVALKNYMDAQYFGEI 94 (505)
Q Consensus 76 ~~~~~pl~n~~~~~Y~~~i 94 (505)
....+.+.|..+..|.+..
T Consensus 44 ~~~sl~l~N~~~~p~LvQs 62 (253)
T PRK15249 44 SSVDVQLKNNDAIPYIVQT 62 (253)
T ss_pred cceeEEEEcCCCCcEEEEE
Confidence 4456777787666677763
No 64
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=24.13 E-value=76 Score=25.40 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=16.6
Q ss_pred CCCCcchHHHHHHHHHHHhhhhhhc
Q 010645 1 MGMVFKSITAGFFLCLLLFPVVFST 25 (505)
Q Consensus 1 ~~m~~~~~~~~~~l~~l~~~~~~a~ 25 (505)
|+|.+...++++++++.++++....
T Consensus 1 m~~~~~~~ll~~v~~l~~~pl~~~~ 25 (91)
T TIGR01165 1 MSMKKTIWLLAAVAALVVLPLLIYA 25 (91)
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcc
Confidence 8898887766666666666555443
No 65
>COG4714 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=20.98 E-value=86 Score=29.56 Aligned_cols=25 Identities=24% Similarity=0.196 Sum_probs=18.6
Q ss_pred CCCCcchHHHHHHHHHHHhhhhhhc
Q 010645 1 MGMVFKSITAGFFLCLLLFPVVFST 25 (505)
Q Consensus 1 ~~m~~~~~~~~~~l~~l~~~~~~a~ 25 (505)
|+|+.++.+++.+-.+|++.+..+.
T Consensus 1 ma~~f~~~il~~l~A~L~c~ss~~v 25 (303)
T COG4714 1 MAMGFRMKILIKLTALLLCGSSWHV 25 (303)
T ss_pred CCcchHHHHHHHHHHHHHhhHhhhh
Confidence 9999998888777776666555443
No 66
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=20.56 E-value=3.4e+02 Score=21.71 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=17.9
Q ss_pred ceEEEEecCCCCceeeeCCCCC
Q 010645 101 QNFTVIFDTGSSNLWVPSSKCY 122 (505)
Q Consensus 101 Q~~~l~lDTGSs~~Wv~~~~C~ 122 (505)
-...+++|||+...-+|...|.
T Consensus 8 s~~~fLVDTGA~vSviP~~~~~ 29 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASSTK 29 (89)
T ss_pred CCcEEEEeCCCceEeecccccc
Confidence 3567999999999999976663
Done!