Query 010646
Match_columns 505
No_of_seqs 195 out of 2241
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 11:15:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010646.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010646hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 100.0 1.2E-53 4.3E-58 436.4 43.4 414 15-440 4-432 (445)
2 4djk_A Probable glutamate/gamm 100.0 4.2E-51 1.4E-55 425.0 42.6 394 13-411 5-428 (511)
3 3gia_A Uncharacterized protein 100.0 2.5E-50 8.7E-55 411.7 42.5 413 16-442 3-426 (444)
4 2jln_A MHP1; hydantoin, transp 99.4 3.6E-09 1.2E-13 108.1 34.8 285 17-312 23-329 (501)
5 2a65_A Leutaa, Na(+):neurotran 98.1 0.0078 2.7E-07 60.8 31.4 108 136-244 166-287 (519)
6 2xq2_A Sodium/glucose cotransp 97.7 0.056 1.9E-06 56.1 31.4 281 18-308 48-376 (593)
7 3dh4_A Sodium/glucose cotransp 97.5 0.12 4.2E-06 52.7 35.7 110 17-130 18-130 (530)
8 3gia_A Uncharacterized protein 84.4 32 0.0011 33.5 27.1 52 393-444 370-425 (444)
9 4ain_A Glycine betaine transpo 67.9 1E+02 0.0036 30.8 17.7 20 17-36 92-111 (539)
10 2wsw_A BCCT family betaine/car 47.3 2.3E+02 0.0077 28.2 29.8 20 17-36 87-106 (509)
11 2l2t_A Receptor tyrosine-prote 29.6 41 0.0014 20.9 2.5 10 429-438 28-37 (44)
12 2ks1_B Epidermal growth factor 29.6 44 0.0015 20.8 2.7 9 430-438 30-38 (44)
13 3b9w_A Ammonium transporter fa 27.5 4.2E+02 0.014 25.4 12.6 11 426-436 335-345 (407)
14 2jwa_A Receptor tyrosine-prote 25.2 87 0.003 19.4 3.4 13 427-439 27-39 (44)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=1.2e-53 Score=436.42 Aligned_cols=414 Identities=18% Similarity=0.255 Sum_probs=352.2
Q ss_pred ccCCCccchhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhh
Q 010646 15 AKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSA 93 (505)
Q Consensus 15 ~~~~r~l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~ 93 (505)
++.||+++.++++++.+++++| |++..+..+.. +||. .+++|++++++ .++.+++++|+++++|++||.|+|+++.
T Consensus 4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~-~G~~-~~~~~li~~~~-~~~~a~~~~el~~~~p~~Gg~y~~~~~~ 80 (445)
T 3l1l_A 4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANLAS-TGGI-AIYGWLVTIIG-ALGLSMVYAKMSFLDPSPGGSYAYARRC 80 (445)
T ss_dssp ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHH-HCTH-HHHHHHHHHHH-HHHHHHHHHHHHHHCCCTTTHHHHHHHH
T ss_pred CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHH-hhhH-HHHHHHHHHHH-HHHHHHHHHHHHccCCCCCCchhhHHhH
Confidence 3568999999999999999999 67777777776 7885 57999999985 8999999999999999999999999999
Q ss_pred hCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 010646 94 FGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLC 173 (505)
Q Consensus 94 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~ 173 (505)
+||.+||+.||.+++++....+......+++++.++|....+++..+++++++++++.+|++|+|..++++.+.+.++++
T Consensus 81 ~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~ 160 (445)
T 3l1l_A 81 FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALI 160 (445)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 99999999999999999998899999999999988887666677888889999999999999999999999999999998
Q ss_pred HHHHHHHHHhccccCCcccccccCCc------ChhHHHHHHHHHhcchHhhhhhhccccCcCcchhHHHHHHHHHHHHHH
Q 010646 174 PFVVMGILSIPRIKPRRWLVVDFKKV------DWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSY 247 (505)
Q Consensus 174 ~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~~~~y 247 (505)
.++++++.++.+.+++++.+. +.+. ++...+...+|+|.|+|.+++++||+|||+|++||+++.+..+++++|
T Consensus 161 ~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y 239 (445)
T 3l1l_A 161 PIVGIAVFGWFWFRGETYMAA-WNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCY 239 (445)
T ss_dssp HHHHHHHTTSTTCCCCCCCCC------------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhcccc-cCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHH
Confidence 888887777766555443221 1111 223334556899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhccCC
Q 010646 248 LIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSK 327 (505)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~k 327 (505)
++..++.....|+++....++|+.+++++..+++...++.+..+++.+++.++.+.+.+|++++|||||.+|++|+|+||
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~ 319 (445)
T 3l1l_A 240 VLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNK 319 (445)
T ss_dssp HHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCCT
T ss_pred HHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcCC
Confidence 99999999999988877778899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccCchhHHHHHH
Q 010646 328 YGTPTLSILCSATGVIFLSWM--------SFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVTMLC 399 (505)
Q Consensus 328 ~~~P~~ai~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 399 (505)
+++|+++++++.+++.++.+. .++.+.++.++...+.|.+.+++.+++|+|+| .+ |.|..+ ++.
T Consensus 320 ~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~-~~---r~~~~~----~~~ 391 (445)
T 3l1l_A 320 AGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF-GK---ARPAYL----AVT 391 (445)
T ss_dssp TCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-GG---GCTTTH----HHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-cc---ccchhH----HHH
Confidence 999999999999877665532 36889999999999999999999999988776 22 333333 445
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010646 400 LLPAVLLVLVMCLASLRTFIVSGGVIIVGFLLYPVLVHAKD 440 (505)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 440 (505)
.++.+++.+..+..++....++..++++|+++|...+++++
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 392 TIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 55666666667777788888889999999998887665544
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=4.2e-51 Score=425.02 Aligned_cols=394 Identities=21% Similarity=0.268 Sum_probs=298.8
Q ss_pred ccccCCCccchhhHHHHHHHHhccCCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCCCCchhHhH
Q 010646 13 KAAKTSPKLTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELAT--SFPENGGYVIWI 90 (505)
Q Consensus 13 ~~~~~~r~l~~~~~~~~~~~~i~g~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s--~~P~~Gg~y~~~ 90 (505)
+++++||+++++++++++++.++| .++++. ... +||.. ++.++++++++.++.+++++|+++ ++| +||.|+|+
T Consensus 5 ~~~~~~r~l~~~~~~~l~~~~~ig-~~~~~~-~~~-~G~~~-~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~~ 79 (511)
T 4djk_A 5 VQTGKAKQLTLLGFFAITASMVMA-VYEYPT-FAT-SGFSL-VFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAWV 79 (511)
T ss_dssp -------CCCHHHHHHHTGGGGCC-GGGHHH-HHT-TTTHH-HHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHHH
T ss_pred ccCccCccccHHHHHHHHHHHHHh-hchhHH-HHh-hHHHH-HHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhhH
Confidence 346789999999999999998875 444444 344 78854 445555555445679999999999 999 99999999
Q ss_pred HhhhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--chhhh-hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 010646 91 SSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHS--LPIFN-LLIARIPALLGITGALTYLNYRGLHIVGFSAVSL 167 (505)
Q Consensus 91 ~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 167 (505)
++.+||++||++||.+++++....+......++++.++ .|... ++++..+++++++++++.+|++|+|..++++.+.
T Consensus 80 ~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~ 159 (511)
T 4djk_A 80 SNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVG 159 (511)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTSCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHTHHH
T ss_pred HhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 99999999999999999999999999888888888877 45443 4466788888999999999999999999999998
Q ss_pred HHHHHHH-HHHHHHHHhccc---cCC----ccccc--ccCCcChhHHHHHHHHHhcchHhhhhhhccccCcCcchhHHHH
Q 010646 168 LVFSLCP-FVVMGILSIPRI---KPR----RWLVV--DFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALL 237 (505)
Q Consensus 168 ~~~~i~~-~~~~~i~~~~~~---~~~----~~~~~--~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~ 237 (505)
..++++. ++++++.++... ++. ++.+. ...+.+....+...+|+|.|+|.+++++||+|||+|++|||++
T Consensus 160 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~ 239 (511)
T 4djk_A 160 FFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAML 239 (511)
T ss_dssp HHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHH
Confidence 8775443 444444443221 111 11111 1111122234556789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcCcccc---HHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 010646 238 GAVVLVVSSYLIPLLAGTGGLTSLSSEWSDG---YFAEVGMLIG--GFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGM 312 (505)
Q Consensus 238 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ 312 (505)
.++.++.++|++..++....+|+++....+. ++.++.+..+ .++...++.+..+++.+++.++++.+.+|++++|
T Consensus 240 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ 319 (511)
T 4djk_A 240 LLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVT 319 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHTTHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888654433 2333333334 4677888888899999999999999999999999
Q ss_pred HhcCCChhhhhccCCCCCChHHHHHHHHHHHHH-H-hhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 010646 313 SEMGMLPAIFASRSKYGTPTLSILCSATGVIFL-S-WMS--------FQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDL 382 (505)
Q Consensus 313 a~dg~lP~~~~~~~k~~~P~~ai~~~~~~~~~~-~-~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 382 (505)
||||.+|++|+|+||+++|++|++++.++..+. . ..+ ++.+.++.++...++|.+++++++++|+|+++.
T Consensus 320 ardg~lP~~~~~~~~~~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~ 399 (511)
T 4djk_A 320 AQKNLLPAAFAKMNKNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDL 399 (511)
T ss_dssp HHGGGCSSSCCCCCSSSCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred ccCCcccHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999884443322 2 222 688999999999999999999999999999888
Q ss_pred CCCccccCchhHHHHHHHHHHHHHHHHHH
Q 010646 383 HRPYKVPLQTFGVTMLCLLPAVLLVLVMC 411 (505)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (505)
+||||.|.+++...++.+++.+++.+..+
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (511)
T 4djk_A 400 KRTFNIPGGKGVKLVVAIVGLLTSIMAFI 428 (511)
T ss_dssp CCSCCCSSTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeecCCCchHHHHHHHHHHHHHHHHHH
Confidence 99999987665544444444444444333
No 3
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=2.5e-50 Score=411.72 Aligned_cols=413 Identities=15% Similarity=0.161 Sum_probs=333.5
Q ss_pred cCCCccchhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhhh
Q 010646 16 KTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAF 94 (505)
Q Consensus 16 ~~~r~l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~ 94 (505)
+.||+++.++++++++++++| |++..+......+|| ..+++|++++++ .++.+++++|+++++|++||.|+|+++.+
T Consensus 3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~-~~~~~~~~~el~~~~P~~Gg~y~~~~~~~ 80 (444)
T 3gia_A 3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIY-ALLVAYSYTKLGAKIVSNAGPIAFIHKAI 80 (444)
T ss_dssp CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHH-HHHHHHHHHHHHTTCCCTTTHHHHHHHHH
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCcHHHhHHHHh
Confidence 468999999999999999999 677666554433788 568899999985 89999999999999999999999999999
Q ss_pred CChh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 010646 95 GPFW-GFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLC 173 (505)
Q Consensus 95 g~~~-g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~ 173 (505)
||++ +...+|.+++++....+..+..+++++..+++...+++...+++++++++++.+|++|+|..++++.+...++++
T Consensus 81 G~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~ 160 (444)
T 3gia_A 81 GDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLL 160 (444)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9973 445689999999999999999999999998876555566677888899999999999999999999999999999
Q ss_pred HHHHHHHHHhccccCCcccccccCCcChhHHHH---HHHHHhcchHhhhhhhccccCcCcchhHHHHHHHHHHHHHHHHH
Q 010646 174 PFVVMGILSIPRIKPRRWLVVDFKKVDWRGYFN---SMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIP 250 (505)
Q Consensus 174 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~~~~y~~~ 250 (505)
.++++++.++...+++++.+. ..+.+|.+.+. ..+|+|.|+|.+++++||+|||+|++||+++.+..++.++|++.
T Consensus 161 ~~~~~ii~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~~~~~y~~~ 239 (444)
T 3gia_A 161 ILGLFIFAGLITIHPSYVIPD-LAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGV 239 (444)
T ss_dssp HHHHHHHHHHHHCCGGGTSCC-CSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcChhhcCCC-CCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHHHHHHHHHH
Confidence 888888877776666665442 22334544443 34689999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCcC-ccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhccCCCC
Q 010646 251 LLAGTGGLTSLSSE-WSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYG 329 (505)
Q Consensus 251 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~k~~ 329 (505)
.++.....|+++.. ..+.|+.++.++..+++...++.+..+++.+++.++.+.+.+|++++|||||.+|++|+|+|| +
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~f~~~~~-~ 318 (444)
T 3gia_A 240 AISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVW-F 318 (444)
T ss_dssp HHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCSSCCTTSC-C
T ss_pred HHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHhCCCC-C
Confidence 99999988877743 345688888988888888888899999999999999999999999999999999999999985 5
Q ss_pred CChHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHH
Q 010646 330 TPTLSILCSATGVIFLS-WMSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVTMLCLLPAVLLVL 408 (505)
Q Consensus 330 ~P~~ai~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (505)
+|.+++++..+++.++. ..+++.+.++.+++..++|.+++++++++|+|+|+. | ...+++++..++...
T Consensus 319 ~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~--------~~~~~~~~~~~~~~~ 388 (444)
T 3gia_A 319 KSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVGGR--K--------EIVIFSFIVVLGVFL 388 (444)
T ss_dssp SCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCC--H--------HHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc--c--------hHHHHHHHHHHHHHH
Confidence 69999999999887765 457999999999999999999999999998886432 1 111222222222222
Q ss_pred HH----HHhhHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 010646 409 VM----CLASLRTFIVSGGVIIVGFLLYPVLVHAKDRK 442 (505)
Q Consensus 409 ~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 442 (505)
.. ...++........+.+...++|..++++++|+
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (444)
T 3gia_A 389 LLLYYQWITNRFVFYGIIATFIGVLIFEIIYRKVTKRT 426 (444)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 22 22233444555555666666666666655554
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=99.35 E-value=3.6e-09 Score=108.13 Aligned_cols=285 Identities=9% Similarity=-0.054 Sum_probs=153.5
Q ss_pred CCCccchhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc-hhHhHHhhh
Q 010646 17 TSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGG-YVIWISSAF 94 (505)
Q Consensus 17 ~~r~l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg-~y~~~~~~~ 94 (505)
.+|+.+.++.+.+=++...+ +.+.++.....+-+....+++.+++.++. +...+-++..-|+.|- .....+..|
T Consensus 23 ~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~----~~~~~l~~~~G~~~Gl~~~v~~R~~F 98 (501)
T 2jln_A 23 AERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIA----VILLFFTQSAAIRWGINFTVAARMPF 98 (501)
T ss_dssp GGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHH----HHHHHHHTHHHHHHCCCHHHHTTTTS
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHH----HHHHHHHhHHHhhcCCChhhhhHhhc
Confidence 45778999999887766654 22333333322123333555555555532 2233333333344333 445778889
Q ss_pred CChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhh-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 010646 95 GPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIA-RIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLC 173 (505)
Q Consensus 95 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~ 173 (505)
|++.+.+......+..+...+.+....++.+...+...- ++. .++..+++.++...+.+.|.|...+++.+...+.++
T Consensus 99 G~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~-g~~~~~v~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~~~i 177 (501)
T 2jln_A 99 GIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT-GFTNLPLWIVIFGAIQVVTTFYGITFIRWMNVFASPVLLA 177 (501)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 999999999988888888788888888877766653211 111 234444556667778899999999999998877776
Q ss_pred HHHHHHHHHhccccC--Ccccccc--cCCcChhHHHHH-HHHHhcchHhhhhhhccccCcCcc-----------hhHHHH
Q 010646 174 PFVVMGILSIPRIKP--RRWLVVD--FKKVDWRGYFNS-MFWNLNYWDKASTLAGEVENPSKT-----------FPKALL 237 (505)
Q Consensus 174 ~~~~~~i~~~~~~~~--~~~~~~~--~~~~~~~~~~~~-~~~a~~G~e~~~~~~~E~k~p~~~-----------ip~ai~ 237 (505)
.++.+.+..+.+.+. ++..... ....++...+.. +-+...+.-..+.++.+.|+++.. .-++..
T Consensus 178 ~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~~~~~~~~~g~~ 257 (501)
T 2jln_A 178 MGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASREGQTKADARYATAQW 257 (501)
T ss_dssp HHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCccccccchhhccchHHHHHH
Confidence 666655544443321 1111111 111122222211 111123335567888888886551 223333
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcCccccHHHHHHHHhcchHH-HHHHH-HHHHHHHHHHHH-HHhhhhhHHHHHH
Q 010646 238 GAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWL-KWWIQ-AASAMSNLGLFE-AEMSGDAFQLLGM 312 (505)
Q Consensus 238 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~-~~~~~~sR~l~a~ 312 (505)
.+..+...+..+........ ....+|...+.....++.. ..+.. +..+++.+++.. +..++++--+..+
T Consensus 258 lG~~i~~~~~~~lG~~~~~~------~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~ 329 (501)
T 2jln_A 258 LGMVPASIIFGFIGAASMVL------VGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAYTLCST 329 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh------ccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 33333332222222221111 1223466555553434433 55555 666666666555 3666666555554
No 5
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=98.10 E-value=0.0078 Score=60.83 Aligned_cols=108 Identities=17% Similarity=0.078 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHhccccCC--c------ccccccC----CcChh
Q 010646 136 IARIPALLGITGALTYLNYRGL-HIVGFSAVSLLVFSLCPFVVMGILSIPRIKPR--R------WLVVDFK----KVDWR 202 (505)
Q Consensus 136 ~~~~~~~~~~~~~~~~i~~~g~-~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~--~------~~~~~~~----~~~~~ 202 (505)
++..+.-+++.++...+..+|+ |-.+|...+....-.+.++++.+-++...++. . +...+++ +..|.
T Consensus 166 ~~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~~vw~ 245 (519)
T 2a65_A 166 LFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWI 245 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhCCHHHHH
Confidence 4444444555666777888899 67999998887776666666666555433311 0 0011111 22466
Q ss_pred HHHHHHHHHhc-chHhhhhhhccccCcCcchhHHHHHHHHHHH
Q 010646 203 GYFNSMFWNLN-YWDKASTLAGEVENPSKTFPKALLGAVVLVV 244 (505)
Q Consensus 203 ~~~~~~~~a~~-G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~~ 244 (505)
.....++|+++ |+.....++.-.|+ +.|++|........-.
T Consensus 246 ~A~gQ~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~ 287 (519)
T 2a65_A 246 AAVGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNE 287 (519)
T ss_dssp HHHHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHH
Confidence 66667788877 88888888888876 6777776655554433
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=97.75 E-value=0.056 Score=56.10 Aligned_cols=281 Identities=12% Similarity=-0.051 Sum_probs=126.7
Q ss_pred CCccchhhHHHHHHHHhccC--CcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhhhC
Q 010646 18 SPKLTVLPLIALIFYEVSGG--PFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFG 95 (505)
Q Consensus 18 ~r~l~~~~~~~~~~~~i~g~--~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g 95 (505)
.|+++.|....-.+++.+++ ..+.++.... .|.....+.|.. .+. .+..++.+...-.+. +.-..+.|.++-+|
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~-~G~~~~~~~~~~-~~~-~~~~~~~~~p~~~r~-~~~T~~e~l~~Rfg 123 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWMS-AIT-LIIVGKYFLPIFIEK-GIYTIPEFVEKRFN 123 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHH-TCGGGGHHHHHH-HHH-HHHHHHTHHHHHHHT-TCCSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHH-cCHHHHHHHHHH-HHH-HHHHHHHHHHHHHhC-CCCCcHHHHHHHcc
Confidence 58888887666555555553 4466666665 453222222211 110 112233334443333 23468899999999
Q ss_pred ChhHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHH
Q 010646 96 PFWGFQEGFWKWLSGV-LDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHI---VGFSAVSLLVFS 171 (505)
Q Consensus 96 ~~~g~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~---~~~~~~~~~~~~ 171 (505)
+....+......+.+. ...+......+..++..++. +.... +.+...+.......-|.|. +..+|.+...+.
T Consensus 124 ~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~Gi---~~~~~-i~i~~~i~~~Yt~~GGl~av~~TD~iQ~iiml~~ 199 (593)
T 2xq2_A 124 KKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGI---PLMYS-ILGLALFALVYSIYGGLSAVVWTDVIQVFFLVLG 199 (593)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCC---CHHHH-HHHHHHHHHHHHHTTC---CCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---cHHHH-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 8887766655444333 33445555556666655541 11111 1112222233444456665 555555544333
Q ss_pred HHHHHHHHHHHhcc-------------ccCCccccccc-CC------cChhHHHHH---HHHHhcchH-hhhhhhccccC
Q 010646 172 LCPFVVMGILSIPR-------------IKPRRWLVVDF-KK------VDWRGYFNS---MFWNLNYWD-KASTLAGEVEN 227 (505)
Q Consensus 172 i~~~~~~~i~~~~~-------------~~~~~~~~~~~-~~------~~~~~~~~~---~~~a~~G~e-~~~~~~~E~k~ 227 (505)
.+.+..+....... ..++.+..... ++ ..|...+.. ....+.|.+ ...+-.=+.||
T Consensus 200 ~l~v~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~q~~~qR~laaks 279 (593)
T 2xq2_A 200 GFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKS 279 (593)
T ss_dssp HHHHHHHHHHHHHGGGHHHHHHHHHHHHCGGGSCSSCCSSSGGGGTSCTTHHHHSTHHHHHHHHHTTTCSHHHHHHTTSC
T ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHhhChhhcccccCCCCcccccchHHHHHHHHHHHHHHHhhcCChHHHHHhheeCC
Confidence 32222221111100 00111111000 00 112211111 112233443 23444556777
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHH----HHHhhccC--------------CCCcCccccHHHHHHHHhcchHHHHHHHHH
Q 010646 228 PSKTFPKALLGAVVLVVSSYLIPL----LAGTGGLT--------------SLSSEWSDGYFAEVGMLIGGFWLKWWIQAA 289 (505)
Q Consensus 228 p~~~ip~ai~~~~~~~~~~y~~~~----~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (505)
+ |+..|+...+.+...++.++.. .+.....+ ..+..+.+..+..+. +..++++..++...
T Consensus 280 ~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~p~l~-~~lp~~l~gl~~a~ 357 (593)
T 2xq2_A 280 V-SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLT-QFLPVGVKGVVFAA 357 (593)
T ss_dssp H-HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGGHHHHHH-HTSCHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhhHHHHHH-HHcChhHHHHHHHH
Confidence 5 6678888777665443333211 11111000 112223345566666 77777777777666
Q ss_pred HHHHHHHHHHHHhhhhhHH
Q 010646 290 SAMSNLGLFEAEMSGDAFQ 308 (505)
Q Consensus 290 ~~~~~~~~~~~~~~~~sR~ 308 (505)
.+.+..++..+.+++.|-.
T Consensus 358 llaA~mST~~s~l~a~st~ 376 (593)
T 2xq2_A 358 LAAAIVSSLASMLNSTATI 376 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666777777777666655
No 7
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=97.48 E-value=0.12 Score=52.72 Aligned_cols=110 Identities=9% Similarity=-0.100 Sum_probs=62.7
Q ss_pred CCCccchhhHHHHHHHHhccC--CcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhhh
Q 010646 17 TSPKLTVLPLIALIFYEVSGG--PFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAF 94 (505)
Q Consensus 17 ~~r~l~~~~~~~~~~~~i~g~--~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~ 94 (505)
-.|++++|......+++.+++ ..+.++.... .|.....+.|.. ++. .+..+..+.....+. +.-..+.|.++-+
T Consensus 18 aGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~-~G~~~~~~~~~~-~~~-~~i~~~~~~p~~~~~-~~~T~~e~l~~Rf 93 (530)
T 3dh4_A 18 AGKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWMS-AIT-LIIVGKYFLPIFIEK-GIYTIPEFVEKRF 93 (530)
T ss_dssp CCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHH-TCGGGHHHHHHH-HHH-HHHHHHHTHHHHHHT-TCCSHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHH-HHH-HHHHHHHHHHHHHHc-CCccHHHHHHHHc
Confidence 369999999888877777773 4567776666 554322222221 111 112233334433332 2346888999999
Q ss_pred CChhHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHhch
Q 010646 95 GPFWGFQEGFWKWLSGVL-DNALYPVLFLDYLKHSLP 130 (505)
Q Consensus 95 g~~~g~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 130 (505)
|++...+.+....+.+.. ..+......+..++..++
T Consensus 94 g~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G 130 (530)
T 3dh4_A 94 NKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG 130 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 998877777655443332 234444555555555554
No 8
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=84.39 E-value=32 Score=33.51 Aligned_cols=52 Identities=13% Similarity=0.073 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHhhccCCC
Q 010646 393 FGVTMLCLLPAVLLVLVMCLASLRTFI----VSGGVIIVGFLLYPVLVHAKDRKWT 444 (505)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~ 444 (505)
....+...+..+.+...........+. ............+..+..+++++..
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (444)
T 3gia_A 370 GGRKEIVIFSFIVVLGVFLLLLYYQWITNRFVFYGIIATFIGVLIFEIIYRKVTKR 425 (444)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 466777777777776666666554332 2223334444455555556665533
No 9
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=67.85 E-value=1e+02 Score=30.83 Aligned_cols=20 Identities=20% Similarity=0.504 Sum_probs=16.8
Q ss_pred CCCccchhhHHHHHHHHhcc
Q 010646 17 TSPKLTVLPLIALIFYEVSG 36 (505)
Q Consensus 17 ~~r~l~~~~~~~~~~~~i~g 36 (505)
-|.+++.++-++|.++.-+|
T Consensus 92 ~kPefS~~sW~aMlF~AGmG 111 (539)
T 4ain_A 92 EAPEFRTVSWISMMFAAGMG 111 (539)
T ss_dssp CCCSSCHHHHHHHHHTTSCC
T ss_pred CCCCCcchHHHHHHHHHhhc
Confidence 46789999999999887777
No 10
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=47.27 E-value=2.3e+02 Score=28.20 Aligned_cols=20 Identities=15% Similarity=0.413 Sum_probs=16.8
Q ss_pred CCCccchhhHHHHHHHHhcc
Q 010646 17 TSPKLTVLPLIALIFYEVSG 36 (505)
Q Consensus 17 ~~r~l~~~~~~~~~~~~i~g 36 (505)
.|.+++.++-+++.+++-+|
T Consensus 87 ~kPefs~~sW~aMlF~aGmG 106 (509)
T 2wsw_A 87 EKPEFSTASWIFMMFASCTS 106 (509)
T ss_dssp SCCSSCHHHHHHHHHHHTCC
T ss_pred CCCCCccchHHHHHHHHhhh
Confidence 56789999999998887777
No 11
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=29.61 E-value=41 Score=20.91 Aligned_cols=10 Identities=0% Similarity=-0.077 Sum_probs=4.0
Q ss_pred HHHHHHHHHh
Q 010646 429 FLLYPVLVHA 438 (505)
Q Consensus 429 ~~~~~~~~~~ 438 (505)
+.+++++|++
T Consensus 28 ~~~~~~~RRR 37 (44)
T 2l2t_A 28 LTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHhhhh
Confidence 3334444443
No 12
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=29.55 E-value=44 Score=20.77 Aligned_cols=9 Identities=0% Similarity=-0.256 Sum_probs=3.6
Q ss_pred HHHHHHHHh
Q 010646 430 LLYPVLVHA 438 (505)
Q Consensus 430 ~~~~~~~~~ 438 (505)
.+++++|++
T Consensus 30 ~~~~~~RRr 38 (44)
T 2ks1_B 30 GIGLFMRRR 38 (44)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHhhhh
Confidence 334444443
No 13
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=27.53 E-value=4.2e+02 Score=25.42 Aligned_cols=11 Identities=18% Similarity=0.250 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 010646 426 IVGFLLYPVLV 436 (505)
Q Consensus 426 ~~g~~~~~~~~ 436 (505)
+.+++++...+
T Consensus 335 v~~~i~~~il~ 345 (407)
T 3b9w_A 335 IGGVIAGALIK 345 (407)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 34444444443
No 14
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=25.24 E-value=87 Score=19.42 Aligned_cols=13 Identities=8% Similarity=0.261 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHhh
Q 010646 427 VGFLLYPVLVHAK 439 (505)
Q Consensus 427 ~g~~~~~~~~~~~ 439 (505)
+++.+.++.||++
T Consensus 27 ~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 27 LGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHhheehhh
Confidence 3334444444443
Done!