BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010647
(505 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DJI|A Chain A, Structure Of Glutamate-Gaba Antiporter Gadc
pdb|4DJI|B Chain B, Structure Of Glutamate-Gaba Antiporter Gadc
pdb|4DJK|A Chain A, Structure Of Glutamate-Gaba Antiporter Gadc
pdb|4DJK|B Chain B, Structure Of Glutamate-Gaba Antiporter Gadc
Length = 511
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 142/357 (39%), Gaps = 35/357 (9%)
Query: 65 WSIPEALITAELATSFP-ENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLF-- 121
W IP L AE+AT E GG W+S+ GP WGF + +L + P+L+
Sbjct: 53 WFIPVGLCAAEMATVDGWEEGGVFAWVSNTLGPRWGFAAISFGYLQ--IAIGFIPMLYFV 110
Query: 122 LDYLKHSL--PIFNL-LIARIPALLGITGALTYLNYRG------LHIVGFSAVSLL-VFS 171
L L + L P N I + A L I AL + G + VGF A LL F
Sbjct: 111 LGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFI 170
Query: 172 LCPFVVMGILSIPRIK---PRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENP 228
L + + S + + DF KV F + + + ++T E+ NP
Sbjct: 171 LIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNP 230
Query: 229 SKTFPKXXXXXXXXXXXXXXIPXXXXXXXXXXXXXEWSDGYFAEVGMLIGGFW--LKWWI 286
+ +P + S G +L+ ++W +
Sbjct: 231 GRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTV 290
Query: 287 QAASAMSNLGLFEAEMS----GDAFQLLGMSEMGMLPAIFASRSKYGTP-TLSI---LCS 338
+ SA+ LG+ AE++ G + + ++ +LPA FA +K G P TL I + +
Sbjct: 291 RVISALLLLGVL-AEIASWIVGPSRGMYVTAQKNLLPAAFAKMNKNGVPVTLVISQLVIT 349
Query: 339 ATGVIFLS------WMSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVP 389
+ +I L+ MSF L +Y + F +I L +K PDL R + +P
Sbjct: 350 SIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIP 406
>pdb|3NCY|A Chain A, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter
(Adic) In Complex With A Fab Fragment
pdb|3NCY|B Chain B, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter
(Adic) In Complex With A Fab Fragment
pdb|3NCY|C Chain C, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter
(Adic) In Complex With A Fab Fragment
pdb|3NCY|D Chain D, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter
(Adic) In Complex With A Fab Fragment
Length = 445
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/284 (21%), Positives = 109/284 (38%), Gaps = 29/284 (10%)
Query: 70 ALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSL 129
+++ A++++ P GG + FGPF G+Q WL+ + N V+ + YL +
Sbjct: 57 SMVYAKMSSLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFF 116
Query: 130 PIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLL-----VFSLCPFVVMGILSIP 184
PI + P +L +T + L+IVG ++ + V +L P V + +
Sbjct: 117 PIL-----KDPLVLTLTCVAVLWIFVLLNIVGPKMITRVQAVATVLALVPIVGIAVFGWF 171
Query: 185 RIKPRRWLVV-DFKKVDWRGYFNSMFWNLNYW-----DKASTLAGEVENPSKTFPKXXXX 238
K ++ + ++ G S N+ W + AS AG V+NP + P
Sbjct: 172 WFKGETYMAAWNVSGMNTFGAIQSTL-NVTLWSFIGVESASVAAGVVKNPKRNVPIATIG 230
Query: 239 XXXXXXXXXXIPXXXXXXXXXXXXXEWSDGYFAEVGMLIGG---FWLKWWIQAASAMSNL 295
+ S F + + G + + AA + +L
Sbjct: 231 GVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSL 290
Query: 296 G---LFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSIL 336
G L + + A ++ G+ P IFA +K GTP +L
Sbjct: 291 GGWTLLAGQTAKAA------ADDGLFPPIFARVNKAGTPVAGLL 328
>pdb|3LRB|A Chain A, Structure Of E. Coli Adic
pdb|3LRB|B Chain B, Structure Of E. Coli Adic
pdb|3LRC|A Chain A, Structure Of E. Coli Adic (P1)
pdb|3LRC|B Chain B, Structure Of E. Coli Adic (P1)
pdb|3LRC|C Chain C, Structure Of E. Coli Adic (P1)
pdb|3LRC|D Chain D, Structure Of E. Coli Adic (P1)
Length = 445
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/285 (20%), Positives = 107/285 (37%), Gaps = 31/285 (10%)
Query: 70 ALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSL 129
+++ A+++ P GG + FGPF G+Q WL+ + N V+ + YL +
Sbjct: 57 SMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFF 116
Query: 130 PIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLL-----VFSLCPFVVMGILSIP 184
PI + P +L IT + + L+IVG ++ + V +L P V + +
Sbjct: 117 PIL-----KDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWF 171
Query: 185 RIKPRRWLVV-------DFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKXXX 237
+ ++ F + + N W+ + AS AG V+NP + P
Sbjct: 172 WFRGETYMAAWNVSGLGTFGAI--QSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATI 229
Query: 238 XXXXXXXXXXXIPXXXXXXXXXXXXXEWSDGYFAEVGMLIGG---FWLKWWIQAASAMSN 294
+ S F + + G + + AA + +
Sbjct: 230 GGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGS 289
Query: 295 LG---LFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSIL 336
LG L + + A ++ G+ P IFA +K GTP ++
Sbjct: 290 LGGWTLLAGQTAKAA------ADDGLFPPIFARVNKAGTPVAGLI 328
>pdb|3L1L|A Chain A, Structure Of Arg-Bound Escherichia Coli Adic
Length = 445
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 19/176 (10%)
Query: 70 ALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSL 129
+++ A+++ P GG + FGPF G+Q WL+ + N V+ + YL +
Sbjct: 57 SMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFF 116
Query: 130 PIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLL-----VFSLCPFVVMGILSIP 184
PI + P +L IT + + L+IVG ++ + V +L P V + +
Sbjct: 117 PIL-----KDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWF 171
Query: 185 RIKPRRWLVV-------DFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFP 233
+ ++ F + + N W+ + AS AG V+NP + P
Sbjct: 172 WFRGETYMAAWNVSGLGTFGAI--QSTLNVTLWSFIGVESASVAAGVVKNPKRNVP 225
>pdb|3OB6|A Chain A, Structure Of Adic(N101a) In The Open-To-Out Arg+ Bound
Conformation
pdb|3OB6|B Chain B, Structure Of Adic(N101a) In The Open-To-Out Arg+ Bound
Conformation
Length = 445
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/285 (20%), Positives = 106/285 (37%), Gaps = 31/285 (10%)
Query: 70 ALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSL 129
+++ A+++ P GG + FGPF G+Q WL+ + V+ + YL +
Sbjct: 57 SMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGAIAMVVIGVGYLSYFF 116
Query: 130 PIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLL-----VFSLCPFVVMGILSIP 184
PI + P +L IT + + L+IVG ++ + V +L P V + +
Sbjct: 117 PIL-----KDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWF 171
Query: 185 RIKPRRWLVV-------DFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKXXX 237
+ ++ F + + N W+ + AS AG V+NP + P
Sbjct: 172 WFRGETYMAAWNVSGLGTFGAI--QSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATI 229
Query: 238 XXXXXXXXXXXIPXXXXXXXXXXXXXEWSDGYFAEVGMLIGG---FWLKWWIQAASAMSN 294
+ S F + + G + + AA + +
Sbjct: 230 GGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGS 289
Query: 295 LG---LFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSIL 336
LG L + + A ++ G+ P IFA +K GTP ++
Sbjct: 290 LGGWTLLAGQTAKAA------ADDGLFPPIFARVNKAGTPVAGLI 328
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,284,906
Number of Sequences: 62578
Number of extensions: 481928
Number of successful extensions: 854
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 835
Number of HSP's gapped (non-prelim): 13
length of query: 505
length of database: 14,973,337
effective HSP length: 103
effective length of query: 402
effective length of database: 8,527,803
effective search space: 3428176806
effective search space used: 3428176806
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)