Query 010647
Match_columns 505
No_of_seqs 195 out of 2241
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 02:57:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010647.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010647hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15049 L-asparagine permease 100.0 6E-56 1.3E-60 455.5 49.4 392 15-412 24-442 (499)
2 PRK10655 potE putrescine trans 100.0 1.6E-55 3.6E-60 448.8 44.9 416 16-440 3-432 (438)
3 PRK10644 arginine:agmatin anti 100.0 3.8E-55 8.3E-60 446.3 47.3 417 15-442 4-434 (445)
4 PRK11387 S-methylmethionine tr 100.0 6.4E-55 1.4E-59 447.2 46.5 418 14-437 9-457 (471)
5 TIGR00906 2A0303 cationic amin 100.0 5.4E-55 1.2E-59 452.3 45.4 423 12-441 21-556 (557)
6 TIGR00908 2A0305 ethanolamine 100.0 2E-54 4.4E-59 441.2 46.5 417 14-437 2-431 (442)
7 PRK10746 putative transport pr 100.0 5.2E-54 1.1E-58 437.8 47.6 421 15-442 6-455 (461)
8 PRK10249 phenylalanine transpo 100.0 3.1E-54 6.7E-59 439.9 46.0 402 1-409 1-427 (458)
9 PRK11357 frlA putative fructos 100.0 1.4E-53 3.1E-58 435.1 44.0 422 14-440 3-439 (445)
10 PRK10836 lysine transporter; P 100.0 5.7E-53 1.2E-57 434.5 47.1 388 1-397 1-423 (489)
11 PRK10238 aromatic amino acid t 100.0 4.9E-53 1.1E-57 430.8 46.2 391 14-411 7-420 (456)
12 KOG1287 Amino acid transporter 100.0 1.3E-54 2.8E-59 421.8 30.4 428 13-445 6-450 (479)
13 TIGR00905 2A0302 transporter, 100.0 6.8E-53 1.5E-57 432.5 44.9 415 17-439 5-439 (473)
14 TIGR00911 2A0308 L-type amino 100.0 1.5E-52 3.3E-57 433.3 44.0 420 13-437 36-471 (501)
15 TIGR00909 2A0306 amino acid tr 100.0 2.6E-52 5.6E-57 424.9 43.5 410 17-434 1-428 (429)
16 TIGR01773 GABAperm gamma-amino 100.0 6E-52 1.3E-56 424.0 45.8 415 14-435 7-448 (452)
17 PRK10580 proY putative proline 100.0 9.9E-52 2.1E-56 422.4 46.2 415 15-436 5-447 (457)
18 COG0833 LysP Amino acid transp 100.0 2.1E-52 4.7E-57 407.3 36.3 420 16-440 41-501 (541)
19 PRK11049 D-alanine/D-serine/gl 100.0 2.9E-51 6.3E-56 419.6 46.3 386 14-406 15-428 (469)
20 KOG1289 Amino acid transporter 100.0 2.1E-53 4.6E-58 413.1 28.7 399 12-414 41-479 (550)
21 TIGR00913 2A0310 amino acid pe 100.0 2.6E-51 5.6E-56 422.6 45.9 417 18-441 1-466 (478)
22 PRK10435 cadB lysine/cadaverin 100.0 2.2E-51 4.7E-56 416.9 43.7 408 16-440 2-428 (435)
23 TIGR03810 arg_ornith_anti argi 100.0 7.8E-51 1.7E-55 416.7 45.5 410 19-438 1-433 (468)
24 PRK10197 gamma-aminobutyrate t 100.0 2.1E-50 4.4E-55 410.4 44.6 405 29-441 2-434 (446)
25 COG1113 AnsP Gamma-aminobutyra 100.0 4.8E-50 1E-54 382.9 37.5 418 13-438 7-452 (462)
26 PRK11021 putative transporter; 100.0 1.1E-48 2.3E-53 395.0 46.2 352 21-378 1-362 (410)
27 TIGR03428 ureacarb_perm permea 100.0 5.3E-49 1.2E-53 403.9 43.1 399 11-413 5-443 (475)
28 TIGR00907 2A0304 amino acid pe 100.0 6.9E-49 1.5E-53 404.7 38.7 399 12-413 5-443 (482)
29 TIGR00910 2A0307_GadC glutamat 100.0 3.6E-47 7.9E-52 390.9 49.0 393 17-413 2-426 (507)
30 TIGR03813 put_Glu_GABA_T putat 100.0 3.6E-47 7.7E-52 390.6 48.1 391 19-413 1-423 (474)
31 TIGR00930 2a30 K-Cl cotranspor 100.0 7.6E-46 1.7E-50 399.5 44.5 415 16-439 73-540 (953)
32 KOG1286 Amino acid transporter 100.0 2.5E-46 5.4E-51 378.9 32.4 378 15-398 26-448 (554)
33 COG0531 PotE Amino acid transp 100.0 3.3E-44 7.2E-49 370.2 45.3 392 13-408 6-418 (466)
34 PRK15238 inner membrane transp 100.0 3.4E-43 7.3E-48 362.6 47.4 370 16-390 4-433 (496)
35 PF13520 AA_permease_2: Amino 100.0 2.7E-44 5.8E-49 366.1 36.1 359 21-384 1-381 (426)
36 PF00324 AA_permease: Amino ac 100.0 5.6E-45 1.2E-49 375.3 6.4 365 27-393 3-412 (478)
37 TIGR00837 araaP aromatic amino 100.0 2.8E-28 6E-33 244.2 29.1 354 28-395 4-374 (381)
38 KOG2082 K+/Cl- cotransporter K 99.9 3E-24 6.4E-29 212.8 23.9 417 18-445 111-655 (1075)
39 TIGR00912 2A0309 spore germina 99.9 2.7E-20 5.8E-25 185.0 34.3 282 19-309 1-292 (359)
40 KOG1288 Amino acid transporter 99.9 1E-21 2.2E-26 193.5 22.3 384 20-416 66-505 (945)
41 TIGR00796 livcs branched-chain 99.9 4.2E-19 9E-24 173.2 34.6 333 35-390 9-366 (378)
42 PF03222 Trp_Tyr_perm: Tryptop 99.9 2.5E-18 5.4E-23 170.7 38.2 365 19-397 1-382 (394)
43 PHA02764 hypothetical protein; 99.9 9.9E-20 2.2E-24 164.8 23.9 279 10-332 3-285 (399)
44 PRK10483 tryptophan permease; 99.9 5E-18 1.1E-22 166.7 37.7 369 16-398 6-391 (414)
45 PRK09664 tryptophan permease T 99.8 1.6E-17 3.5E-22 162.9 36.6 365 22-400 10-394 (415)
46 PRK15132 tyrosine transporter 99.8 1.5E-17 3.3E-22 164.1 36.6 364 22-398 4-380 (403)
47 KOG2083 Na+/K+ symporter [Inor 99.8 2.4E-19 5.2E-24 175.7 17.7 398 17-422 26-455 (643)
48 TIGR00814 stp serine transport 99.8 5.3E-17 1.1E-21 160.8 30.0 288 25-314 7-312 (397)
49 COG0814 SdaC Amino acid permea 99.8 1.2E-15 2.6E-20 152.6 37.1 280 16-297 4-299 (415)
50 PRK13629 threonine/serine tran 99.8 1E-15 2.2E-20 150.3 33.0 286 28-315 26-348 (443)
51 PF03845 Spore_permease: Spore 99.5 1.1E-11 2.4E-16 120.9 26.9 279 20-309 1-288 (320)
52 PF01235 Na_Ala_symp: Sodium:a 99.4 6.2E-10 1.3E-14 109.3 26.1 290 15-313 13-338 (416)
53 KOG1303 Amino acid transporter 99.2 8.3E-09 1.8E-13 102.8 27.0 344 16-375 33-398 (437)
54 TIGR00835 agcS amino acid carr 99.2 3.9E-08 8.5E-13 97.3 31.2 285 18-312 44-364 (425)
55 KOG1304 Amino acid transporter 99.2 7.2E-08 1.6E-12 94.8 30.4 241 19-262 45-306 (449)
56 COG1115 AlsT Na+/alanine sympo 99.2 2.9E-07 6.3E-12 89.6 32.3 289 16-313 58-382 (452)
57 PLN03074 auxin influx permease 99.1 9.9E-08 2.1E-12 97.4 29.5 232 22-261 47-294 (473)
58 COG3949 Uncharacterized membra 99.1 1E-06 2.2E-11 82.2 30.8 265 28-304 10-280 (349)
59 PTZ00206 amino acid transporte 99.1 9.9E-08 2.1E-12 97.7 27.1 235 24-261 63-319 (467)
60 COG1457 CodB Purine-cytosine p 99.0 4.4E-06 9.5E-11 82.8 36.2 152 71-229 70-224 (442)
61 PRK11375 allantoin permease; P 99.0 5E-06 1.1E-10 85.4 37.9 316 12-346 18-362 (484)
62 PF01490 Aa_trans: Transmembra 98.9 2.4E-11 5.2E-16 123.3 -5.3 352 19-381 1-377 (409)
63 PRK11017 codB cytosine permeas 98.8 0.00018 3.9E-09 72.5 39.7 216 18-244 8-228 (404)
64 PF05525 Branch_AA_trans: Bran 98.8 3.6E-05 7.9E-10 76.4 33.8 331 35-389 17-371 (427)
65 PRK15433 branched-chain amino 98.5 0.00081 1.8E-08 67.0 31.5 327 35-388 22-373 (439)
66 TIGR00800 ncs1 NCS1 nucleoside 98.4 0.0015 3.3E-08 66.8 33.3 235 15-253 8-261 (442)
67 COG1953 FUI1 Cytosine/uracil/t 98.4 0.0033 7.2E-08 62.9 34.3 314 14-346 34-376 (497)
68 KOG1305 Amino acid transporter 98.4 4.9E-05 1.1E-09 75.7 20.5 240 18-262 3-258 (411)
69 TIGR02119 panF sodium/pantothe 98.4 0.0053 1.1E-07 63.5 39.1 283 17-308 38-345 (471)
70 TIGR02358 thia_cytX probable h 98.3 0.0054 1.2E-07 61.4 36.7 200 54-258 31-231 (386)
71 COG1114 BrnQ Branched-chain am 98.3 0.0044 9.5E-08 60.3 34.8 339 23-388 7-372 (431)
72 TIGR00813 sss transporter, SSS 98.3 0.0029 6.3E-08 64.1 31.6 279 18-308 2-321 (407)
73 PRK15419 proline:sodium sympor 98.3 0.0083 1.8E-07 62.4 37.3 143 17-168 38-194 (502)
74 COG0733 Na+-dependent transpor 98.2 0.0098 2.1E-07 58.8 33.6 223 24-252 12-267 (439)
75 PRK09442 panF sodium/panthothe 98.0 0.024 5.2E-07 58.8 41.3 282 17-307 39-345 (483)
76 TIGR02121 Na_Pro_sym sodium/pr 98.0 0.026 5.6E-07 58.6 37.9 284 17-315 34-349 (487)
77 COG0591 PutP Na+/proline sympo 98.0 0.025 5.5E-07 58.5 36.0 287 16-308 35-352 (493)
78 PF01566 Nramp: Natural resist 98.0 0.0056 1.2E-07 60.8 25.2 240 69-313 25-285 (358)
79 PF02133 Transp_cyt_pur: Perme 97.9 0.00015 3.2E-09 74.3 13.1 161 16-180 4-179 (440)
80 PF00474 SSF: Sodium:solute sy 97.8 0.0054 1.2E-07 62.1 23.2 284 18-316 5-324 (406)
81 PRK00701 manganese transport p 97.8 0.054 1.2E-06 55.0 35.1 60 69-128 77-138 (439)
82 PF02705 K_trans: K+ potassium 97.7 0.018 3.9E-07 58.8 24.5 294 70-378 52-378 (534)
83 COG1914 MntH Mn2+ and Fe2+ tra 97.4 0.16 3.4E-06 50.8 31.3 62 68-129 59-122 (416)
84 PRK12488 acetate permease; Pro 97.4 0.25 5.4E-06 52.0 34.9 145 17-171 65-214 (549)
85 PRK10745 trkD potassium transp 97.1 0.086 1.9E-06 54.6 20.4 247 109-369 116-379 (622)
86 PRK10484 putative transporter; 97.0 0.54 1.2E-05 49.3 40.8 286 17-308 36-354 (523)
87 PLN00148 potassium transporter 97.0 0.27 5.9E-06 52.4 22.9 245 110-367 170-432 (785)
88 TIGR00794 kup potassium uptake 96.9 0.46 1E-05 50.3 23.6 248 110-369 141-405 (688)
89 KOG2466 Uridine permease/thiam 96.8 0.72 1.6E-05 46.1 22.8 164 15-187 50-235 (572)
90 PLN00149 potassium transporter 96.7 0.66 1.4E-05 49.6 23.6 248 111-367 171-436 (779)
91 TIGR02711 symport_actP cation/ 96.7 1.1 2.4E-05 47.2 35.7 144 17-170 65-213 (549)
92 TIGR03648 Na_symport_lg probab 96.6 1.2 2.6E-05 47.1 34.8 108 17-130 30-142 (552)
93 PRK09395 actP acetate permease 96.6 1.3 2.8E-05 46.8 34.8 137 17-165 67-210 (551)
94 PLN00151 potassium transporter 96.4 0.39 8.4E-06 51.4 19.4 242 113-367 250-509 (852)
95 PF02028 BCCT: BCCT family tra 96.3 1.6 3.4E-05 44.9 31.8 153 16-170 70-255 (485)
96 PLN00150 potassium ion transpo 96.1 0.83 1.8E-05 48.8 19.7 242 113-367 190-449 (779)
97 COG3158 Kup K+ transporter [In 95.7 1.5 3.3E-05 44.7 18.7 294 69-378 70-394 (627)
98 PF13906 AA_permease_C: C-term 95.0 0.086 1.9E-06 35.4 5.4 49 386-438 1-49 (51)
99 PF00209 SNF: Sodium:neurotran 95.0 4.5 9.7E-05 42.5 21.0 96 149-246 191-296 (523)
100 KOG4303 Vesicular inhibitory a 94.9 0.63 1.4E-05 44.4 12.5 236 16-259 112-361 (524)
101 PRK09950 putative transporter; 93.4 11 0.00023 39.0 27.7 19 18-36 81-99 (506)
102 COG4145 PanF Na+/panthothenate 92.6 11 0.00024 36.8 28.9 278 17-306 37-342 (473)
103 COG4147 DhlC Predicted symport 92.3 14 0.0003 37.3 28.3 191 54-253 79-290 (529)
104 PRK09928 choline transport pro 88.3 40 0.00087 36.2 29.7 91 283-375 408-501 (679)
105 PF02554 CstA: Carbon starvati 87.5 31 0.00067 33.9 21.1 52 209-261 297-351 (376)
106 PRK03356 L-carnitine/gamma-but 87.1 40 0.00088 34.9 28.5 150 18-171 83-269 (504)
107 COG2271 UhpC Sugar phosphate p 87.1 12 0.00025 37.6 12.2 46 294-347 68-113 (448)
108 COG1292 BetT Choline-glycine b 85.2 50 0.0011 34.1 30.1 153 16-171 83-269 (537)
109 PF12794 MscS_TM: Mechanosensi 84.3 24 0.00052 34.7 13.1 38 218-255 28-69 (340)
110 COG4858 Uncharacterized membra 84.2 14 0.0003 32.0 9.7 20 327-346 89-113 (226)
111 COG4146 Predicted symporter [G 79.4 67 0.0014 31.6 23.6 45 86-130 105-150 (571)
112 PF06570 DUF1129: Protein of u 78.8 24 0.00051 31.8 10.2 16 425-440 184-199 (206)
113 KOG3660 Sodium-neurotransmitte 77.9 1E+02 0.0023 33.0 25.8 87 140-226 218-313 (629)
114 KOG2568 Predicted membrane pro 76.8 49 0.0011 34.0 12.4 18 223-240 186-208 (518)
115 COG4025 Predicted membrane pro 73.8 54 0.0012 29.7 10.4 16 304-319 55-70 (284)
116 TIGR00837 araaP aromatic amino 70.0 1.2E+02 0.0026 30.1 24.4 22 222-243 205-226 (381)
117 TIGR00796 livcs branched-chain 69.7 1.2E+02 0.0027 30.2 14.1 72 88-163 259-330 (378)
118 PRK11056 hypothetical protein; 66.2 67 0.0015 25.7 8.8 17 363-379 39-55 (120)
119 PF09991 DUF2232: Predicted me 65.9 1.2E+02 0.0026 28.6 17.7 94 288-384 163-262 (290)
120 KOG2349 Na+:iodide/myo-inosito 64.9 1.9E+02 0.0042 30.6 14.6 102 18-125 44-149 (585)
121 TIGR00842 bcct choline/carniti 62.1 1.9E+02 0.0042 29.6 29.2 19 18-36 34-52 (453)
122 PF05525 Branch_AA_trans: Bran 61.3 1.9E+02 0.0042 29.3 15.0 73 88-164 265-337 (427)
123 PTZ00206 amino acid transporte 60.7 1.5E+02 0.0032 30.7 12.6 56 268-323 121-176 (467)
124 PF02667 SCFA_trans: Short cha 59.6 2.1E+02 0.0045 29.2 15.0 31 320-350 82-113 (453)
125 PF07226 DUF1422: Protein of u 58.1 95 0.0021 24.8 10.3 13 367-379 43-55 (117)
126 PRK10263 DNA translocase FtsK; 50.3 4.9E+02 0.011 30.7 18.3 6 277-282 63-68 (1355)
127 TIGR01478 STEVOR variant surfa 48.0 41 0.00088 31.5 5.3 34 410-443 257-290 (295)
128 PTZ00370 STEVOR; Provisional 46.3 43 0.00093 31.4 5.1 35 409-443 252-286 (296)
129 PRK15433 branched-chain amino 42.7 3.9E+02 0.0084 27.3 14.7 72 88-164 269-340 (439)
130 TIGR01197 nramp NRAMP (natural 41.7 3.8E+02 0.0082 26.9 32.3 39 270-308 282-320 (390)
131 PF01102 Glycophorin_A: Glycop 40.8 34 0.00074 27.8 3.3 15 426-440 80-94 (122)
132 PF03547 Mem_trans: Membrane t 38.3 4.1E+02 0.0088 26.3 14.8 9 311-319 18-26 (385)
133 COG3949 Uncharacterized membra 37.7 4E+02 0.0086 26.0 14.3 80 237-323 39-118 (349)
134 PRK12489 anaerobic C4-dicarbox 37.3 4.5E+02 0.0098 26.9 11.3 17 329-345 83-99 (443)
135 PF14256 YwiC: YwiC-like prote 37.2 2.4E+02 0.0051 23.3 10.8 22 358-379 31-52 (129)
136 PF03806 ABG_transport: AbgT p 37.0 4.7E+02 0.01 27.2 11.4 94 66-165 307-406 (502)
137 PF02009 Rifin_STEVOR: Rifin/s 36.4 40 0.00086 32.3 3.5 21 422-442 266-286 (299)
138 PRK00968 tetrahydromethanopter 35.5 55 0.0012 29.2 3.9 33 221-253 203-236 (240)
139 PHA03049 IMV membrane protein; 32.2 1.1E+02 0.0023 21.7 4.1 19 421-439 9-27 (68)
140 KOG3659 Sodium-neurotransmitte 28.7 7.4E+02 0.016 26.4 27.2 117 136-253 252-377 (629)
141 PF05297 Herpes_LMP1: Herpesvi 28.6 15 0.00032 34.1 -0.6 7 329-335 77-83 (381)
142 KOG1289 Amino acid transporter 27.9 7.3E+02 0.016 26.1 15.8 73 55-128 294-369 (550)
143 PF11174 DUF2970: Protein of u 27.6 1.9E+02 0.0041 19.9 4.7 24 204-227 4-27 (56)
144 PRK15132 tyrosine transporter 24.9 7.3E+02 0.016 25.1 13.0 46 268-313 65-110 (403)
145 COG1114 BrnQ Branched-chain am 24.9 7.3E+02 0.016 25.1 15.4 71 88-162 267-337 (431)
146 PF15050 SCIMP: SCIMP protein 24.9 1.4E+02 0.003 24.0 4.1 15 424-438 20-34 (133)
147 PF14007 YtpI: YtpI-like prote 23.7 3.4E+02 0.0073 20.8 7.0 20 412-431 54-73 (89)
148 PTZ00046 rifin; Provisional 23.6 91 0.002 30.5 3.6 20 423-442 326-345 (358)
149 TIGR01477 RIFIN variant surfac 23.4 93 0.002 30.4 3.6 20 423-442 321-340 (353)
150 PF08507 COPI_assoc: COPI asso 22.4 4.5E+02 0.0097 21.7 12.1 22 414-435 85-106 (136)
151 COG4060 MtrD Tetrahydromethano 22.4 1.2E+02 0.0026 26.1 3.6 31 222-252 194-225 (230)
152 PF14667 Polysacc_synt_C: Poly 22.2 4.3E+02 0.0094 21.5 13.5 21 326-346 26-46 (146)
153 PF03169 OPT: OPT oligopeptide 21.9 1E+03 0.022 25.6 17.2 49 210-258 442-492 (624)
154 PF05297 Herpes_LMP1: Herpesvi 21.4 31 0.00068 32.1 0.0 14 327-340 17-30 (381)
155 PF05961 Chordopox_A13L: Chord 21.4 1.8E+02 0.0039 20.7 3.7 20 421-440 9-28 (68)
156 PF02990 EMP70: Endomembrane p 20.5 1E+03 0.022 25.0 16.3 28 350-377 366-393 (521)
157 KOG1303 Amino acid transporter 20.3 9.3E+02 0.02 24.6 13.1 94 266-364 103-196 (437)
158 PRK03557 zinc transporter ZitB 20.1 7.9E+02 0.017 23.7 14.6 16 331-346 17-32 (312)
No 1
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=6e-56 Score=455.52 Aligned_cols=392 Identities=15% Similarity=0.162 Sum_probs=317.3
Q ss_pred ccCCCccchhhHHHHHHHHhcc-CCcCchh-hhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHh
Q 010647 15 AKTSPKLTVLPLIALIFYEVSG-GPFGVED-SVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (505)
Q Consensus 15 ~~~~r~l~~~~~~~~~~~~i~g-~~~~~~~-~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~ 92 (505)
+++||+++.+++.++++|.++| |+|..++ .+.. +||.. +++|++++++ .++.+++++||++++|++||.|+|+++
T Consensus 24 ~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~-aGp~~-il~~li~~i~-~~~v~~slaELas~~P~aGg~y~y~~~ 100 (499)
T PRK15049 24 EGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQM-AGPAL-ALVYLICGLF-SFFILRALGELVLHRPSSGSFVSYARE 100 (499)
T ss_pred hhhhccCCHhHhHHHhhhccccchHHHhhHHHHHh-cCCHH-HHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 3599999999999999999999 6775555 4555 89954 7899999995 999999999999999999999999999
Q ss_pred hhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 010647 93 AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL 172 (505)
Q Consensus 93 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i 172 (505)
.+||.+||++||.+|+.|....+......+.+..++ +.++ ..+.+.+.++++++++.+|++|+|..++++.++..+++
T Consensus 101 ~~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~iN~~gvk~~~~i~~~~~~iki 178 (499)
T PRK15049 101 FLGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GAFG-GVPQWVFALAALTIVGTMNMIGVKWFAEMEFWFALIKV 178 (499)
T ss_pred HhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998876666666666666543 2111 23455667778888999999999999999999999998
Q ss_pred HHHHHHHHHHhcc---ccCC--c---ccc----cccCCcChhHHH---HHHHHHhcchHhhhhhhccccCcCcchhHHHH
Q 010647 173 CPFVVMGILSIPR---IKPR--R---WLV----VDFKKVDWRGYF---NSMFWNLNYWDKASTLAGEVENPSKTFPKALL 237 (505)
Q Consensus 173 ~~~~~~~i~~~~~---~~~~--~---~~~----~~~~~~~~~~~~---~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~ 237 (505)
+.++++++.++.. .++. + +.. ....+.++.+.+ ..++|+|.|+|.+++++||+|||+|++|||+.
T Consensus 179 ~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPrAi~ 258 (499)
T PRK15049 179 LAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAIN 258 (499)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHHHHH
Confidence 7766655544321 1111 1 110 011123443333 34689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCC
Q 010647 238 GAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGM 317 (505)
Q Consensus 238 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~ 317 (505)
.++..++++|++..++....+|+++.....+|+.+++++.+.+....++.+.++++.+++.++.+++.||++|+|||||.
T Consensus 259 ~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~ 338 (499)
T PRK15049 259 SVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGS 338 (499)
T ss_pred HHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999887767789999999999888889999999999999999999999999999999999
Q ss_pred ChhhhhccCCCCCChHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---CCCCcc
Q 010647 318 LPAIFASRSKYGTPTLSILCSATGVIFLSW-------MSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPD---LHRPYK 387 (505)
Q Consensus 318 lP~~~~~~~k~~~P~~ai~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~ 387 (505)
+|++|+|+||+++|++|++++.+++++..+ ..++.+.++.++...+.|++++++.+++|++.++ .+||||
T Consensus 339 lP~~f~kv~k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~~l~~R~~~~~~~~~~~pf~ 418 (499)
T PRK15049 339 APSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRLRKAIKEGKAADVSFK 418 (499)
T ss_pred cCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCc
Confidence 999999999999999999998887654321 2378899999999999999999999999876433 357999
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHH
Q 010647 388 VPLQTFGVTMLCLLPAVLLVLVMCL 412 (505)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (505)
.|.+++.. +++++..++......+
T Consensus 419 ~~~~p~~~-~~~l~~~~~~~~~~~~ 442 (499)
T PRK15049 419 LPGAPFTS-WLTLLFLLSVLVLMAF 442 (499)
T ss_pred ccCccHHH-HHHHHHHHHHHHHHHH
Confidence 99876444 4444444444444443
No 2
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=1.6e-55 Score=448.76 Aligned_cols=416 Identities=18% Similarity=0.189 Sum_probs=343.4
Q ss_pred cCCCccchhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhhh
Q 010647 16 KTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAF 94 (505)
Q Consensus 16 ~~~r~l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~ 94 (505)
++|||+++++++++++++++| |++..|..+.. +|+. .+++|++++++ +++.+++|+|+++++|++||.|.|+++.+
T Consensus 3 ~~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~-~G~~-~~~~w~i~~~~-~~~~a~~~aeL~~~~P~~GG~y~y~~~~~ 79 (438)
T PRK10655 3 AKSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQ-VGTI-SILSWLVTAVG-SMALAYAFAKCGMFSRKSGGMGGYAEYAF 79 (438)
T ss_pred CccCcccHHHHHHHHHHhhhhhHHHHhHHHHHH-hhHH-HHHHHHHHHHH-HHHHHHHHHHHhhhCCCCCchHHHHHHHc
Confidence 367899999999999999999 67888877777 7884 57899999995 99999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 010647 95 GPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCP 174 (505)
Q Consensus 95 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~ 174 (505)
||..||++||.+++.+.......+....+|+..++|...++++..++.++++++++.+|++|+|..+++|++....+++.
T Consensus 80 G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~l~~ 159 (438)
T PRK10655 80 GKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGATLSPVQICLATIGVLWLCTVANFGGARITGQISSVTVWGVIIP 159 (438)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988776666777778888887754445666777788888999999999999999999999888887
Q ss_pred HHHHHHHHhccccCCccccc-ccCCcC-hhH---HHHHHHHHhcchHhhhhhhccccCcCcchhHHHHHHHHHHHHHHHH
Q 010647 175 FVVMGILSIPRIKPRRWLVV-DFKKVD-WRG---YFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLI 249 (505)
Q Consensus 175 ~~~~~i~~~~~~~~~~~~~~-~~~~~~-~~~---~~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~~~~y~~ 249 (505)
++++.+.++...+++++.+. ...... +.+ .+...+|+|.|+|.+++++||+|||+|++|||++.+..+++++|++
T Consensus 160 l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~Y~l 239 (438)
T PRK10655 160 VVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAAVIYIV 239 (438)
T ss_pred HHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHHHHHHHH
Confidence 77776666554444443221 111111 122 2345689999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhccCCCC
Q 010647 250 PLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYG 329 (505)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~k~~ 329 (505)
...+.....|+++...+++|+.+.+++..+++...++.+..+++.+++.++++.+.+|++++++|||.+|++|+|+||++
T Consensus 240 ~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~v~~~~ 319 (438)
T PRK10655 240 STNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFPKIFSRVTKVD 319 (438)
T ss_pred HHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhCcCC
Confidence 99988888888877666789999999998888888888888899999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHH
Q 010647 330 TPTLSILCSATGVIFLSW--------MSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVTMLCLL 401 (505)
Q Consensus 330 ~P~~ai~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (505)
+|++|++++.+++.++.+ ..++.+.++.++...+.|.+++++.+++|+|+++.+||||.+. ++..+
T Consensus 320 tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~~~~~~~~~~~~------~~~~~ 393 (438)
T PRK10655 320 APVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANVPPSKAKVAN------FIAFV 393 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHH------HHHHH
Confidence 999999999887765442 2477899999999999999999999999999888888988642 22334
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010647 402 PAVLLVLVMCLASLRTFIVSGGVIIVGFLLYPVLVHAKD 440 (505)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 440 (505)
+.+++++.....+.....++..++++|+++|...+++..
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 432 (438)
T PRK10655 394 GALYSFYALYSSGEEAMLYGSIVTFLGWTLYGLISPRFE 432 (438)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444444444444455667778888999999976655443
No 3
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=3.8e-55 Score=446.35 Aligned_cols=417 Identities=18% Similarity=0.273 Sum_probs=341.1
Q ss_pred ccCCCccchhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhh
Q 010647 15 AKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSA 93 (505)
Q Consensus 15 ~~~~r~l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~ 93 (505)
.+++||+++++++++++|.++| |++..++.+.. .|+. .+++|+++++. .++.+++++||++++|++||.|.|+++.
T Consensus 4 ~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~-~g~~-~~~~~~i~~~~-~l~~al~~aEL~s~~P~aGG~y~~~~~~ 80 (445)
T PRK10644 4 DADAHKVGLIPVTLMVAGNIMGSGVFLLPANLAS-TGGI-AIYGWLVTIIG-ALGLSMVYAKMSSLDPSPGGSYAYARRC 80 (445)
T ss_pred CccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHH-HHHH-HHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCChhHHHHHH
Confidence 4588999999999999999999 78888877776 5553 57999999985 9999999999999999999999999999
Q ss_pred hCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 010647 94 FGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLC 173 (505)
Q Consensus 94 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~ 173 (505)
+||.+||++||.+|+.+.............|...++|...+++...++.++++++++.+|++|+|..+++|++.+.++++
T Consensus 81 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~~~i 160 (445)
T PRK10644 81 FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALI 160 (445)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 99999999999999988776666666667788777775544555666777888899999999999999999999999988
Q ss_pred HHHHHHHHHhccccCCccccc-cc-CCcChh---HHHHHHHHHhcchHhhhhhhccccCcCcchhHHHHHHHHHHHHHHH
Q 010647 174 PFVVMGILSIPRIKPRRWLVV-DF-KKVDWR---GYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYL 248 (505)
Q Consensus 174 ~~~~~~i~~~~~~~~~~~~~~-~~-~~~~~~---~~~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~~~~y~ 248 (505)
.++++.+.++...+++++.+. +. +..++. ..+...+|+|.|+|.+++++||+|||+|++|||++.++.++.++|+
T Consensus 161 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~v~Y~ 240 (445)
T PRK10644 161 PIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYV 240 (445)
T ss_pred HHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHH
Confidence 777766665544333332221 10 111222 2334568999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhccCCC
Q 010647 249 IPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKY 328 (505)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~k~ 328 (505)
+..++.....|+++...+++|+.++.++..+++...++.+..+++.+++.++++...+|.+++|||||.+|++|+|+||+
T Consensus 241 l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ardg~lP~~~~~v~~~ 320 (445)
T PRK10644 241 LSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKA 320 (445)
T ss_pred HHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCcC
Confidence 99999999999887766678999999998888888888888888999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHH
Q 010647 329 GTPTLSILCSATGVIFLSWM--------SFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVTMLCL 400 (505)
Q Consensus 329 ~~P~~ai~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 400 (505)
++|++|++++.+++.++.+. .++.+.++.++..+++|++++++.+++|+|+++.++|+ ++ +...
T Consensus 321 ~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~p~----~~----~~~~ 392 (445)
T PRK10644 321 GTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPA----YL----AVTL 392 (445)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccc----hh----HHHH
Confidence 99999999999988766532 47888999999999999999999999988876544443 22 2344
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 010647 401 LPAVLLVLVMCLASLRTFIVSGGVIIVGFLLYPVLVHAKDRK 442 (505)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 442 (505)
++++++++.....++.+..++..+.+++.++|+..+++|+++
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 434 (445)
T PRK10644 393 IAFVYCIWAVVGSGAKEVMWSFVTLMVITAFYALNYNRLHKN 434 (445)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 455555555556677778888888888888887766654443
No 4
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=6.4e-55 Score=447.22 Aligned_cols=418 Identities=17% Similarity=0.164 Sum_probs=326.5
Q ss_pred cccCCCccchhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHh
Q 010647 14 AAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (505)
Q Consensus 14 ~~~~~r~l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~ 92 (505)
++++||+++.+++.++++|.++| |+|..++.....+||...+++|++++++ .++.+++++||++++|++||.|.|+++
T Consensus 9 ~~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~-~~~~~~~~aELas~~P~aGG~y~y~~~ 87 (471)
T PRK11387 9 AGQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALV-VYLVMQCLGELSVAMPETGAFHVYAAR 87 (471)
T ss_pred chhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34699999999999999999999 6776666554338886678999999995 999999999999999999999999999
Q ss_pred hhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 010647 93 AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL 172 (505)
Q Consensus 93 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i 172 (505)
.+||.+||.+||.+|+++....+......+.+++.+.|. .+.+...+++.++++.+|++|+|..++++.+++.+++
T Consensus 88 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~~~~~~~~in~~gvk~~~~~~~~~~~~ki 163 (471)
T PRK11387 88 YLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQ----VPVWPWCLLFCALIFGLNVVSTRFFAEGEFWFSLIKV 163 (471)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----CcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999999999988877777777777766663 2333444555667889999999999999999998888
Q ss_pred HHHHHHHHHHhccc------cCC-------cccccccCCcChh---HHHHHHHHHhcchHhhhhhhccccCcCcchhHHH
Q 010647 173 CPFVVMGILSIPRI------KPR-------RWLVVDFKKVDWR---GYFNSMFWNLNYWDKASTLAGEVENPSKTFPKAL 236 (505)
Q Consensus 173 ~~~~~~~i~~~~~~------~~~-------~~~~~~~~~~~~~---~~~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai 236 (505)
+.++++++.++... +.. ++...++.+.+.. ..+..++|+|.|+|.+++++||+|||+|++|||+
T Consensus 164 ~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi 243 (471)
T PRK11387 164 VTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVIPVAI 243 (471)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHHHHHH
Confidence 77766555443210 111 1111111112222 2234468999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcC
Q 010647 237 LGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMG 316 (505)
Q Consensus 237 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg 316 (505)
+.++.++.++|++..++.....|.++...+++|+.+++++.++++...++.+.++++.+++.++.+++.||++|+|||||
T Consensus 244 ~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ardg 323 (471)
T PRK11387 244 RTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSNEG 323 (471)
T ss_pred HHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcC
Confidence 99999999999999999999999888766678999999999888888899999999999999999999999999999999
Q ss_pred CChhhhhccCCCCCChHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-----CCC
Q 010647 317 MLPAIFASRSKYGTPTLSILCSATGVIFLSWM-------SFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPD-----LHR 384 (505)
Q Consensus 317 ~lP~~~~~~~k~~~P~~ai~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~ 384 (505)
.+|++|+|+||+++|++|+++..+++++..+. .++.+.++.++..++.|++.+++.+++|+++++ .+|
T Consensus 324 ~lP~~f~~~~~~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~~~~i~lr~~~~~~~~~~~~~ 403 (471)
T PRK11387 324 TLPACFARLTKRGIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSICASHFMFRRRHLRDGKALSEL 403 (471)
T ss_pred CcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999999887665543321 245677888899999999999999999987654 247
Q ss_pred CccccCchhHHHHHHHHHHHHHHHHHHHh-h-HHHHHHHHHHHHHHHHHHHHHHH
Q 010647 385 PYKVPLQTFGVTMLCLLPAVLLVLVMCLA-S-LRTFIVSGGVIIVGFLLYPVLVH 437 (505)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~g~~~~~~~~~ 437 (505)
|||.|.+++...+ +++..++.+...... . ......+..+++++++.|..++|
T Consensus 404 ~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (471)
T PRK11387 404 AYRAPWYPLTPIL-GFVLCLLACVGLAFDPSQRIALWCGIPFVALCYGAYYLTQR 457 (471)
T ss_pred CccCCCccHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8999887644333 333333333222222 1 12344566666777777766543
No 5
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=5.4e-55 Score=452.28 Aligned_cols=423 Identities=19% Similarity=0.242 Sum_probs=356.4
Q ss_pred cccccCCCccchhhHHHHHHHHhcc-CCcCchhhhh-hcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHh
Q 010647 12 QKAAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVK-AGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIW 89 (505)
Q Consensus 12 ~~~~~~~r~l~~~~~~~~~~~~i~g-~~~~~~~~~~-~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~ 89 (505)
+++++++|+++.++++++++|.++| |+|..++... ..+||. .+++|++++++ +++.+++|+|+++++|++||.|.|
T Consensus 21 ~~~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~-~l~~al~yaElas~~P~sGg~Y~y 98 (557)
T TIGR00906 21 REESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLA-AVLSGFCYAEFGARVPKAGSAYLY 98 (557)
T ss_pred ccccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCcceee
Confidence 3455799999999999999999999 7887776543 338886 68999999995 889999999999999999999999
Q ss_pred HHhhhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhh-----------h-hh--hhHHHHHHHHHHHHHHHHHh
Q 010647 90 ISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIF-----------N-LL--IARIPALLGITGALTYLNYR 155 (505)
Q Consensus 90 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~--~~~~~~~~~~~~~~~~i~~~ 155 (505)
+++.+|+.+||++||.+++.|....+..+...+.|+..++... . +. ....+++++++++.+.+|++
T Consensus 99 ~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~ 178 (557)
T TIGR00906 99 SYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSF 178 (557)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999988888887665320 0 00 12234566777788899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccc------ccCCcChhHHH---HHHHHHhcchHhhhhhhcccc
Q 010647 156 GLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVV------DFKKVDWRGYF---NSMFWNLNYWDKASTLAGEVE 226 (505)
Q Consensus 156 g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~------~~~~~~~~~~~---~~~~~a~~G~e~~~~~~~E~k 226 (505)
|+|.++|+|++++.++++.++++++.++.+.+++++... ++.+.++.+.+ ..++|+|.|+|.+++++||+|
T Consensus 179 Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~k 258 (557)
T TIGR00906 179 GVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVK 258 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhcc
Confidence 999999999999999999888888888776666665421 12233444444 446899999999999999999
Q ss_pred CcCcchhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010647 227 NPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDA 306 (505)
Q Consensus 227 ~p~~~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 306 (505)
||+|++|||++.++++++++|++..++.....|+++.+ .++|+....++.+.++...++.+..+.+.+++.++.+.+.+
T Consensus 259 nP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~-~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~s 337 (557)
T TIGR00906 259 NPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLD-PDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLP 337 (557)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhC-cCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887654 35688888888777788888888888999999999999999
Q ss_pred HHHHHHHhcCCChhhhhccC-CCCCChHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------
Q 010647 307 FQLLGMSEMGMLPAIFASRS-KYGTPTLSILCSATGVIFLS-WMSFQEILEFLNFLYAIGMLLEFAAFIKLRIK------ 378 (505)
Q Consensus 307 R~l~a~a~dg~lP~~~~~~~-k~~~P~~ai~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~------ 378 (505)
|++|+|||||.+|++|+|+| |+++|++|+++..+++.++. +.+++.+.++.+++.++.|.+++++.+++|++
T Consensus 338 Ril~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll~y~lv~~~~l~lR~~~~~~~~ 417 (557)
T TIGR00906 338 RVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYG 417 (557)
T ss_pred HHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 99999999999999999999 89999999999999887665 44789999999999999999999999988843
Q ss_pred ------------------------------------------------------------------------------CC
Q 010647 379 ------------------------------------------------------------------------------KP 380 (505)
Q Consensus 379 ------------------------------------------------------------------------------~~ 380 (505)
+|
T Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (557)
T TIGR00906 418 QAKDTDEKDTLDSWVPFTSKSESQSEGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFLLVVLTIWRQP 497 (557)
T ss_pred ccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCC
Confidence 23
Q ss_pred CC--CCCccccCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010647 381 DL--HRPYKVPLQTFGVTMLCLLPAVLLVLVMCLASLRTFIVSGGVIIVGFLLYPVLVHAKDR 441 (505)
Q Consensus 381 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 441 (505)
+. +|+||+|..| ++..++++.+.+.+...+..++....+|+++|+++|+.+.+++.+
T Consensus 498 ~~~~~~~f~~p~~p----~~p~~~i~~~~~l~~~l~~~~~~~~~~w~~~g~~~y~~yg~~~s~ 556 (557)
T TIGR00906 498 QNKQKVAFKVPLVP----FLPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFLYGIRHSL 556 (557)
T ss_pred CCCCCCCCCCCCch----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 33 5678888776 445666778888888888999999999999999999998776543
No 6
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=2e-54 Score=441.25 Aligned_cols=417 Identities=20% Similarity=0.250 Sum_probs=332.6
Q ss_pred cccCCCccchhhHHHHHHHHhccCCc-CchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHh
Q 010647 14 AAKTSPKLTVLPLIALIFYEVSGGPF-GVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (505)
Q Consensus 14 ~~~~~r~l~~~~~~~~~~~~i~g~~~-~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~ 92 (505)
++++||++++++.++++++.++||.+ +.+..+.. +||...++++++++++ .++.+++++|+++++|++||.|.|+++
T Consensus 2 ~~~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~-~G~~~~~~~~~i~~~~-~~~~a~~~aEl~s~~P~~Gg~y~~~~~ 79 (442)
T TIGR00908 2 HRQLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQ-GGWGGFVVATLLVATM-YLTFCFSLAELSTMIPTAGGGYGFARR 79 (442)
T ss_pred CchhhccCCHHHHHHhHHHHHhhccchhHhhHHHH-hCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 46799999999999999999988654 44556666 8998888999998884 899999999999999999999999999
Q ss_pred hhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 010647 93 AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL 172 (505)
Q Consensus 93 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i 172 (505)
.+||.+||++||.+++.+....+..+..+++|+..++|.. +.+...++++++.+.+|++|+|..++++.+...+++
T Consensus 80 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~----~~~~~~~~~~~~~~~ln~~g~~~~~~i~~~~~~~~~ 155 (442)
T TIGR00908 80 AFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVG----PGWLAALVFYIVFIGINILGVGEAAKLEFVVTAVAI 155 (442)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----chhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999999999999999999888743 334566677778899999999999999999998887
Q ss_pred HHHHHHHHHHhccccCCccccc------ccCCcChhHHH---HHHHHHhcchHhhhhhhccccCcCcchhHHHHHHHHHH
Q 010647 173 CPFVVMGILSIPRIKPRRWLVV------DFKKVDWRGYF---NSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLV 243 (505)
Q Consensus 173 ~~~~~~~i~~~~~~~~~~~~~~------~~~~~~~~~~~---~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~ 243 (505)
+.++++......+.+..++.+. .+.+.++.+.+ ...+|+|.|+|.+++++||+|||+|++|||++.+..++
T Consensus 156 ~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~~~~ 235 (442)
T TIGR00908 156 IALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAILTL 235 (442)
T ss_pred HHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHH
Confidence 7665554443333232222111 11122333333 34579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCcCccccHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhh
Q 010647 244 VSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGG--FWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAI 321 (505)
Q Consensus 244 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~ 321 (505)
.++|+..........+.++....++|+.+.+++..+ .+...++.+..+++.+++.++.+.+.+|++|+|||||.+|++
T Consensus 236 ~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~l~a~ardg~lP~~ 315 (442)
T TIGR00908 236 LALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQIFALSRAGYLPES 315 (442)
T ss_pred HHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH
Confidence 999998887777666766666567799998888755 345556667777888899999999999999999999999999
Q ss_pred hhccCCCCCChHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHH
Q 010647 322 FASRSKYGTPTLSILCSATGVIFLSWM-SFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVTMLCL 400 (505)
Q Consensus 322 ~~~~~k~~~P~~ai~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 400 (505)
|+|+||+|+|++|++++.++++++.+. +.+.+.++.++...+.|++.+++++++|+|+|+.+||||.|.+++...+ ++
T Consensus 316 ~~~~~~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~p~~~rp~~~p~~~~~~~l-~~ 394 (442)
T TIGR00908 316 LSKVNRKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRPDMERPYRTPGGILTPGV-AL 394 (442)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCCCcchHHHH-HH
Confidence 999999999999999999888766533 5566778888899999999999999999999999999999987644433 44
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010647 401 LPAVLLVLVMCLASLRTFIVSGGVIIVGFLLYPVLVH 437 (505)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 437 (505)
+..+++++..+..++........+.+++.++|+.++|
T Consensus 395 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 431 (442)
T TIGR00908 395 VLACVALVTGFYVDPRVVVGAVAIFVVLIGYYFLYSR 431 (442)
T ss_pred HHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhhh
Confidence 4445555555555554444445555566666666543
No 7
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=5.2e-54 Score=437.78 Aligned_cols=421 Identities=15% Similarity=0.151 Sum_probs=339.5
Q ss_pred ccCCCccchhhHHHHHHHHhcc-CCcCc-hhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHh
Q 010647 15 AKTSPKLTVLPLIALIFYEVSG-GPFGV-EDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (505)
Q Consensus 15 ~~~~r~l~~~~~~~~~~~~i~g-~~~~~-~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~ 92 (505)
+++||+++.+++.++++|+++| |+|.. ...+.. +|| ..+++|++++++ .++++++++||++++|++||.|.|++|
T Consensus 6 ~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~-aGp-~~~l~~~i~g~~-~~~v~~~~aEl~~~~P~sGg~~~y~~~ 82 (461)
T PRK10746 6 PELQRGLEARHIELIALGGTIGVGLFMGAASTLKW-AGP-SVLLAYIIAGLF-VFFIMRSMGEMLFLEPVTGSFAVYAHR 82 (461)
T ss_pred hHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHh-cCh-HHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 5799999999999999999999 66644 455566 899 478999999995 899999999999999999999999999
Q ss_pred hhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 010647 93 AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL 172 (505)
Q Consensus 93 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i 172 (505)
.+||.+||.+||.||+.+....+......+.|++.++|.. +.+.+..+++++.+.+|++|+|..++++.+++.+++
T Consensus 83 ~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~----~~~~~~~~~~~~~~~lN~~gv~~~~~~e~~~~~~ki 158 (461)
T PRK10746 83 YMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEM----AQWIPALIAVALVALANLAAVRLYGEIEFWFAMIKV 158 (461)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC----chHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888888999998888742 334555666778888999999999999999999998
Q ss_pred HHHHHHHHHHhc----c-ccC------Cccccc-ccCCcChhHH---HHHHHHHhcchHhhhhhhccccCcCcchhHHHH
Q 010647 173 CPFVVMGILSIP----R-IKP------RRWLVV-DFKKVDWRGY---FNSMFWNLNYWDKASTLAGEVENPSKTFPKALL 237 (505)
Q Consensus 173 ~~~~~~~i~~~~----~-~~~------~~~~~~-~~~~~~~~~~---~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~ 237 (505)
+.++++++.++. . .+. .++.+. ...+.+|.++ +..++|+|.|+|.+++++||+|||+|++|||+.
T Consensus 159 ~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~Ai~ 238 (461)
T PRK10746 159 TTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVG 238 (461)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHHHHH
Confidence 766655543321 1 111 111111 1112345444 345689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCC
Q 010647 238 GAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGM 317 (505)
Q Consensus 238 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~ 317 (505)
.+...+.++|++..++.....|+++...+++|+.+..++.+.+....++.++.+++.+++.++.+++.||++|+|||||.
T Consensus 239 ~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~ 318 (461)
T PRK10746 239 KVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQ 318 (461)
T ss_pred HHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999998777789999999988888888888999999999999999999999999999999
Q ss_pred ChhhhhccCCCCCChHHHHHHHHHHHHHH---h------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--CCCCc
Q 010647 318 LPAIFASRSKYGTPTLSILCSATGVIFLS---W------MSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPD--LHRPY 386 (505)
Q Consensus 318 lP~~~~~~~k~~~P~~ai~~~~~~~~~~~---~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~ 386 (505)
+|++|+|+||+|+|++|+++..+..++.. . ..++.+.++++....+.|++.+++.+++||++|+ .++||
T Consensus 319 lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~~~~~~~~~~ 398 (461)
T PRK10746 319 LPAAMAKVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHKAAIASHPF 398 (461)
T ss_pred cCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC
Confidence 99999999999999999998765433221 1 1367788999999999999999999999998875 36789
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 010647 387 KVPLQTFGVTMLCLLPAVLLVLVMCLAS-LRTFIVSGGVIIVGFLLYPVLVHAKDRK 442 (505)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 442 (505)
|.|.+++...+..+...+.++...+.++ ......+..+++++.+.|..+++++|.|
T Consensus 399 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 455 (461)
T PRK10746 399 RSILFPWANYLTMAFLICVLIGMYFNEDTRMSLFVGIIFLLAVTLIYKVFGLNRHGK 455 (461)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 9998887665543333333222222232 3456667777778888888887776654
No 8
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=3.1e-54 Score=439.90 Aligned_cols=402 Identities=16% Similarity=0.210 Sum_probs=325.0
Q ss_pred CCCCCCCcccccccc--cCCCccchhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010647 1 MGEEGMTSDVQQKAA--KTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELA 77 (505)
Q Consensus 1 m~~~~~~~~~~~~~~--~~~r~l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~ 77 (505)
|.++++.+.++.+++ +++|+++.+++.++++|.++| |+|..++.....+||. .+++|++++++ .++.+++++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~-~~l~~li~~~~-~~~~~~~~aEl~ 78 (458)
T PRK10249 1 MKNASTVSEDTASNQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPA-VLLGYGVAGII-AFLIMRQLGEMV 78 (458)
T ss_pred CCCccccchhhccCCchhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcH-HHHHHHHHHHH-HHHHHHHHHHHH
Confidence 444444334433333 799999999999999999999 6776655544438995 68999999995 999999999999
Q ss_pred ccCCCCCchhHhHHhhhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 010647 78 TSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGL 157 (505)
Q Consensus 78 s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 157 (505)
+++|++||.|.|+++.+||.+||.+||.+|+.+....+......+.|++.++|. .+.+.+..+++++.+.+|++|+
T Consensus 79 ~~~P~~Gg~~~y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~l~~~lN~~gv 154 (458)
T PRK10249 79 VEEPVSGSFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPD----VPTWIWAAAFFIIINAVNLVNV 154 (458)
T ss_pred HhCCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----CcHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999888888888888888887763 3344556777888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc---cccC---Ccccc----cccCCcChhHH---HHHHHHHhcchHhhhhhhcc
Q 010647 158 HIVGFSAVSLLVFSLCPFVVMGILSIP---RIKP---RRWLV----VDFKKVDWRGY---FNSMFWNLNYWDKASTLAGE 224 (505)
Q Consensus 158 ~~~~~~~~~~~~~~i~~~~~~~i~~~~---~~~~---~~~~~----~~~~~~~~~~~---~~~~~~a~~G~e~~~~~~~E 224 (505)
|..++++.+++.++++.++++++.++. ..++ .++.. ....+.+|.++ +...+|+|.|+|.+++++||
T Consensus 155 ~~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E 234 (458)
T PRK10249 155 RLYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAE 234 (458)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 999999999999988666655443321 1111 11111 11112455543 34568999999999999999
Q ss_pred ccCcCcchhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 010647 225 VENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSG 304 (505)
Q Consensus 225 ~k~p~~~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (505)
+|||+|++|||++.+...+.++|++..+......|+++....++|+.+++++.+++....++.++.+++.+++.++.+.+
T Consensus 235 ~~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 314 (458)
T PRK10249 235 ARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYS 314 (458)
T ss_pred hcCHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888888666668999999999988888888888899999999999999
Q ss_pred hhHHHHHHHhcCCChhhhhccCCCCCChHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010647 305 DAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWM-------SFQEILEFLNFLYAIGMLLEFAAFIKLRI 377 (505)
Q Consensus 305 ~sR~l~a~a~dg~lP~~~~~~~k~~~P~~ai~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~r~ 377 (505)
.||++|+|||||.+|++|+|+||+++|++|++++.+++.+..+. .++.+.++.+....++|++++++++++|+
T Consensus 315 ~sR~l~a~ardg~lP~~~~kv~~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~ 394 (458)
T PRK10249 315 NSRMLFGLSVQGNAPKFLTRVSRRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRA 394 (458)
T ss_pred HHHHHHHHhcCCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888765422 47888999999999999999999999986
Q ss_pred --hCCCCCCCccccCchhHHHHHHHHHHHHHHHH
Q 010647 378 --KKPDLHRPYKVPLQTFGVTMLCLLPAVLLVLV 409 (505)
Q Consensus 378 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (505)
++++.++|||.|.+++.. +++++...+....
T Consensus 395 ~~~~~~~~~p~~~~~~p~~~-~~~l~~~~~~~v~ 427 (458)
T PRK10249 395 AMRRQGRETQFKALLYPFGN-YLCIAFLGMILLL 427 (458)
T ss_pred HHHhcCCCCCccCCCccHHH-HHHHHHHHHHHHH
Confidence 445567899998776443 3344444443333
No 9
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=1.4e-53 Score=435.07 Aligned_cols=422 Identities=21% Similarity=0.288 Sum_probs=333.0
Q ss_pred cccCCCccchhhHHHHHHHHhcc-CCcCchhhhh-hcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHH
Q 010647 14 AAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVK-AGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWIS 91 (505)
Q Consensus 14 ~~~~~r~l~~~~~~~~~~~~i~g-~~~~~~~~~~-~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~ 91 (505)
++++||++++++.++++++.++| |++..++... ..++|...+++|++++++ .++.+++++|+++++|++||.|.|++
T Consensus 3 ~~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~-~l~~al~~aEl~s~~P~~GG~y~y~~ 81 (445)
T PRK11357 3 SQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLI-VIPQMCVYAELSTAYPENGADYVYLK 81 (445)
T ss_pred cccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCCceeeHH
Confidence 45799999999999999999988 6777776643 324565678999999995 99999999999999999999999999
Q ss_pred hhhCChhHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 010647 92 SAFGPFWGFQEGFWKW-LSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVF 170 (505)
Q Consensus 92 ~~~g~~~g~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~ 170 (505)
+.+||.+||.+||..+ .......+..+...++|+..+.|.. +.....+.++++.+++.+|++|+|..+|+|.+++.+
T Consensus 82 ~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~--~~~~~~~~~~~~~~~~~ln~~gv~~~~~v~~~~~~~ 159 (445)
T PRK11357 82 NAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPID--PLLGKFIAAGLIIAFMLLHLRSVEGGAAFQTLITIA 159 (445)
T ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999999999999754 4556667778888888887766531 223345566667778899999999999999999999
Q ss_pred HHHHHHHHHHHHhccccCCcccccc---cCCcC-hhHH---HHHHHHHhcchHhhhhhhccccCcCcchhHHHHHHHHHH
Q 010647 171 SLCPFVVMGILSIPRIKPRRWLVVD---FKKVD-WRGY---FNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLV 243 (505)
Q Consensus 171 ~i~~~~~~~i~~~~~~~~~~~~~~~---~~~~~-~~~~---~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~ 243 (505)
+++.++++++.++...+++++.+.. .+..+ +.++ +...+|+|.|+|.+++++||+|||+|++|||++.++.++
T Consensus 160 ~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~~~~i~ 239 (445)
T PRK11357 160 KIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLV 239 (445)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHHHHHHH
Confidence 9987777666555433333332111 11112 3333 344689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCcCccccHHHHHHHHh--cchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhh
Q 010647 244 VSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLI--GGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAI 321 (505)
Q Consensus 244 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~ 321 (505)
.++|++...+.....|.++...++.|+.++.+.. .++....++.+...++.+++.++++.+.+|++|+|+|||.+|++
T Consensus 240 ~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lp~~ 319 (445)
T PRK11357 240 LVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKC 319 (445)
T ss_pred HHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCchHH
Confidence 9999999999998888888766677888888764 56666677777788889999999999999999999999999999
Q ss_pred hhccC-CCCCChHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccCchhHHHHHH
Q 010647 322 FASRS-KYGTPTLSILCSATGVIFLS-WMSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVTMLC 399 (505)
Q Consensus 322 ~~~~~-k~~~P~~ai~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 399 (505)
|+|+| |+|+|++|++++.++++++. ..+++.+.+..+....+.|.+...+.+++|+++ +.+||||.|.++....+ +
T Consensus 320 ~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~~-~~~~~~k~p~~~~~~~~-~ 397 (445)
T PRK11357 320 FGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRD-DYKPLWRTPAFGLMTTL-A 397 (445)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHheeecCC-CCCCCcccCCchHHHHH-H
Confidence 99999 89999999999999988766 457888888888888999999988988887664 56789999987744333 3
Q ss_pred HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010647 400 LLPAVLLVLVMCLA-SLRTFIVSGGVIIVGFLLYPVLVHAKD 440 (505)
Q Consensus 400 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~ 440 (505)
++..+++....... +......+..++++|+++|+.++++++
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 439 (445)
T PRK11357 398 IASSLILVASTFVWAPIPGLICAVIVIATGLPAYAFWAKRSR 439 (445)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhhhHHhheechhh
Confidence 33333333333333 334455677888899998887665543
No 10
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=5.7e-53 Score=434.51 Aligned_cols=388 Identities=18% Similarity=0.154 Sum_probs=309.8
Q ss_pred CCCCCCCcccccccccCCCccchhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010647 1 MGEEGMTSDVQQKAAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATS 79 (505)
Q Consensus 1 m~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~ 79 (505)
|..|++. .+++++||+++.+++.++++|+++| |+|..++.....+||...+++|++++++ +++.+++|+||+++
T Consensus 1 ~~~~~~~----~~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~-~~~~al~~aEL~s~ 75 (489)
T PRK10836 1 MVSETKT----TEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLM-VYFLMTSLGELAAY 75 (489)
T ss_pred CCccccc----CCcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 5555442 2236799999999999999999999 7887776554448997689999999995 99999999999999
Q ss_pred CCCCCchhHhHHhhhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHH
Q 010647 80 FPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHI 159 (505)
Q Consensus 80 ~P~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 159 (505)
+|++||.|.|+++.+||.+||.+||.+++.+....+........++..++|.. +.+.+..+++.+.+.+|++|+|.
T Consensus 76 ~P~sGg~y~y~~~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~~----~~~~~~~~~~~~~~~lN~~gv~~ 151 (489)
T PRK10836 76 MPVSGSFATYGQNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDT----PGWIWSALFLGVIFLLNYISVRG 151 (489)
T ss_pred CCCCCCHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC----chHHHHHHHHHHHHHHHHHcchh
Confidence 99999999999999999999999999999887776655555555566555532 22344556666778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc------cc----CCcccccc-cCCcChhHHH---HHHHHHhcchHhhhhhhccc
Q 010647 160 VGFSAVSLLVFSLCPFVVMGILSIPR------IK----PRRWLVVD-FKKVDWRGYF---NSMFWNLNYWDKASTLAGEV 225 (505)
Q Consensus 160 ~~~~~~~~~~~~i~~~~~~~i~~~~~------~~----~~~~~~~~-~~~~~~~~~~---~~~~~a~~G~e~~~~~~~E~ 225 (505)
.+++|.+++.++++.++.+++.++.. .+ ..++.+.. ..+.++.+.+ ...+|+|.|+|.+++++||+
T Consensus 152 ~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~ 231 (489)
T PRK10836 152 FGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGES 231 (489)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHh
Confidence 99999999999987766554433211 11 11221100 0112343333 23469999999999999999
Q ss_pred cCcCcchhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcC--------ccccHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Q 010647 226 ENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSE--------WSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGL 297 (505)
Q Consensus 226 k~p~~~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (505)
|||+|++|||++.++..+.++|++........+|.++.. ...+|+.+.+.+.+.+....++.++++++.+++
T Consensus 232 knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~il~a~~~~ 311 (489)
T PRK10836 232 EDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSA 311 (489)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888866421 124688888888887777888889999999999
Q ss_pred HHHHhhhhhHHHHHHHhcCCChhhhhccCCCCCChHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHH
Q 010647 298 FEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWM-------SFQEILEFLNFLYAIGMLLEFA 370 (505)
Q Consensus 298 ~~~~~~~~sR~l~a~a~dg~lP~~~~~~~k~~~P~~ai~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~ 370 (505)
.|+.+++.||++|+|||||.+|++|+|+||+++|++|++++.+++++..+. .++.+.++.++..++.|++.++
T Consensus 312 ~n~~~~~~sR~l~a~Ardg~lP~~~~kv~~~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~ 391 (489)
T PRK10836 312 GNSGMYASTRMLYTLACDGKAPRIFAKLSRGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAI 391 (489)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988765532 2566888889999999999999
Q ss_pred HHHHHHhh----CCCCC-CCccccCchhHHHH
Q 010647 371 AFIKLRIK----KPDLH-RPYKVPLQTFGVTM 397 (505)
Q Consensus 371 ~~~~~r~~----~~~~~-~~~~~~~~~~~~~~ 397 (505)
+.+++||+ .|+.+ ||||.|.+++...+
T Consensus 392 a~l~~R~~~~~~~~~~~~~p~~~p~~p~~~~~ 423 (489)
T PRK10836 392 SHYRFRRGYVLQGHDLNDLPYRSGFFPLGPIF 423 (489)
T ss_pred HHHHHHHHHHhcCCCcCCCCCcCCCccHHHHH
Confidence 99999986 35544 79999998855443
No 11
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=4.9e-53 Score=430.81 Aligned_cols=391 Identities=18% Similarity=0.226 Sum_probs=320.0
Q ss_pred cccCCCccchhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHh
Q 010647 14 AAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (505)
Q Consensus 14 ~~~~~r~l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~ 92 (505)
++++||+++.+++.++++++++| |+|..++.....+|| ..+++|++++++ .++.+++++|+++++|.+||.|+|+++
T Consensus 7 ~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~-~~~v~~s~aEl~s~~P~aGg~y~~~~~ 84 (456)
T PRK10238 7 GEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFI-AFLIMRQLGEMVVEEPVAGSFSHFAYK 84 (456)
T ss_pred chhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 44799999999999999999999 677666655444889 578999999995 999999999999999999999999999
Q ss_pred hhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 010647 93 AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL 172 (505)
Q Consensus 93 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i 172 (505)
.+||.+||.+||.+++++....+.....++++++.++|+ .+.+.+.++++++++.+|++|+|..++++.+.+.+++
T Consensus 85 ~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~i~~~~~~~lN~~gv~~~~~~~~~~~~iki 160 (456)
T PRK10238 85 YWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE----IPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAIIKV 160 (456)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----CcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888763 2344556677778999999999999999999999998
Q ss_pred HHHHHHHHHHh---ccc--cCC-cccc----cccCCcChhHH---HHHHHHHhcchHhhhhhhccccCcCcchhHHHHHH
Q 010647 173 CPFVVMGILSI---PRI--KPR-RWLV----VDFKKVDWRGY---FNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGA 239 (505)
Q Consensus 173 ~~~~~~~i~~~---~~~--~~~-~~~~----~~~~~~~~~~~---~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~ 239 (505)
+.++++++.++ ... ++. .+.+ ..+.+.++.+. +....|+|.|+|.+++++||+|||+|++|||+..+
T Consensus 161 ~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi~~~ 240 (456)
T PRK10238 161 IAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQV 240 (456)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHHHHH
Confidence 77665544322 111 111 1111 01112334432 34468999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCh
Q 010647 240 VVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLP 319 (505)
Q Consensus 240 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP 319 (505)
.....++|+..........|+++...+++|+.++.++.+.+....++...++.+.+++.++.+++.||++|+|||||.+|
T Consensus 241 ~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP 320 (456)
T PRK10238 241 IYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAP 320 (456)
T ss_pred HHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 99999999999888887888888766778999999988888888888888999999999999999999999999999999
Q ss_pred hhhhccCCCCCChHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC--CCCccccC
Q 010647 320 AIFASRSKYGTPTLSILCSATGVIFLSWM-------SFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDL--HRPYKVPL 390 (505)
Q Consensus 320 ~~~~~~~k~~~P~~ai~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~~ 390 (505)
++|+|+||+++|++|++++.+++.+..+. .++.+.++++...+++|.+++++.+++||++++. +++|+.|.
T Consensus 321 ~~f~kv~~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~~~~ 400 (456)
T PRK10238 321 KALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAKQEQGVVTRFPALL 400 (456)
T ss_pred HHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCC
Confidence 99999998899999999999987765532 4788999999999999999999999999876553 45677766
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 010647 391 QTFGVTMLCLLPAVLLVLVMC 411 (505)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~ 411 (505)
+++.. +.+++...+..+..+
T Consensus 401 ~p~~~-~~~~~~~~~~~~~~~ 420 (456)
T PRK10238 401 YPLGN-WICLLFMAAVLVIML 420 (456)
T ss_pred ccHHH-HHHHHHHHHHHHHHH
Confidence 66444 444444444444433
No 12
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-54 Score=421.76 Aligned_cols=428 Identities=26% Similarity=0.345 Sum_probs=361.9
Q ss_pred ccccCCCccchhhHHHHHHHHhcc-CCcCchhhhhhcCchHHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhH
Q 010647 13 KAAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLS-LLGFLIFPLIWSIPEALITAELATSFPENGGYVIWI 90 (505)
Q Consensus 13 ~~~~~~r~l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~-i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~ 90 (505)
++.++|||++++..+.+.+++++| |+|..|..+...+|+.+. +.-|+..++ ++++.++||+||++.+|.+||+|.|.
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi-~s~~galcyaELGT~ipksGgd~ayi 84 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGI-ISIIGALCYAELGTSIPKSGGDYAYI 84 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHH-HHHHHHHHHHHHhccccCCCcchhhH
Confidence 345689999999999999999999 799999888665777664 444555555 69999999999999999999999999
Q ss_pred HhhhCChhHHHHHHHHHHH-hhhhHHHHHHHHHHH-HHHhchhhh-hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 010647 91 SSAFGPFWGFQEGFWKWLS-GVLDNALYPVLFLDY-LKHSLPIFN-LLIARIPALLGITGALTYLNYRGLHIVGFSAVSL 167 (505)
Q Consensus 91 ~~~~g~~~g~~~g~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 167 (505)
.+.+||.+||..+|.-++. .....+..+..+++| +..++|... +.....+++.+++++++++|+.++|+..++|.++
T Consensus 85 ~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~lla~~~l~~lt~~n~~~V~~a~~vq~~f 164 (479)
T KOG1287|consen 85 SEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLLAAALLVLLTLINSFSVKWATRVQIVF 164 (479)
T ss_pred HHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 9999999999999987665 555669999999999 777777332 4456677888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccc---cCCccccc-----ccCCcChhHHHHHHHHHhcchHhhhhhhccccCcCcchhHHHHHH
Q 010647 168 LVFSLCPFVVMGILSIPRI---KPRRWLVV-----DFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGA 239 (505)
Q Consensus 168 ~~~~i~~~~~~~i~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~ 239 (505)
+..+++.++++++.++... +.+++... ..+..+|...+....|+|.|||.....+||+|||+|++|||+..+
T Consensus 165 t~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~Ai~is 244 (479)
T KOG1287|consen 165 TIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPRAILIS 244 (479)
T ss_pred HHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccccchHHHHHh
Confidence 9999999999998887632 23332211 122334566677789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCh
Q 010647 240 VVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLP 319 (505)
Q Consensus 240 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP 319 (505)
+.++++.|++.+++...++++|+..+++....+.++...|.+. +++.+.+.++++++.|+.+.+.||+++++||+|++|
T Consensus 245 i~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP 323 (479)
T KOG1287|consen 245 IPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLP 323 (479)
T ss_pred hHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCcc
Confidence 9999999999999999999999988788888888888888777 999999999999999999999999999999999999
Q ss_pred hhhhccC-CCCCChHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccCchhHHHH
Q 010647 320 AIFASRS-KYGTPTLSILCSATGVIFLSWM-SFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVTM 397 (505)
Q Consensus 320 ~~~~~~~-k~~~P~~ai~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 397 (505)
+.|++.| |..+|..++++.+..+++..+. +++.+++..++...+.+.+.+++.+++|+|+|+.+||+|+|...+....
T Consensus 324 ~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rPiKvpl~~p~~~~ 403 (479)
T KOG1287|consen 324 AFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRPIKVPLFIPILFL 403 (479)
T ss_pred HHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCEeeeeehHHHHH
Confidence 9999999 5669999999999999998877 5999999999999999999999999999999999999999987654443
Q ss_pred HHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCC
Q 010647 398 LCLLPAVLLVLVMCLAS-LRTFIVSGGVIIVGFLLYPVLVHAKD-RKWTQ 445 (505)
Q Consensus 398 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~ 445 (505)
++.++++......+ +....++..+++.|+++|+...++++ +++.+
T Consensus 404 ---~~~i~lvvip~~~~~~~~~~ig~~i~l~G~~~Y~~~i~~~~~p~~~~ 450 (479)
T KOG1287|consen 404 ---LICIFLVVIPIISDFPVETLIGIGIILSGVPFYFLFIHWKKKPKWLR 450 (479)
T ss_pred ---HHHHHHhheeeeecCCccchhHHHHHHHhhhhheEEEEecCCcHHHH
Confidence 33444444444455 44488889999999999987766554 34443
No 13
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=100.00 E-value=6.8e-53 Score=432.47 Aligned_cols=415 Identities=21% Similarity=0.294 Sum_probs=338.8
Q ss_pred CCCccchhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCchhHhHHhhh
Q 010647 17 TSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPE-NGGYVIWISSAF 94 (505)
Q Consensus 17 ~~r~l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~-~Gg~y~~~~~~~ 94 (505)
++|+++++++.++++++++| |++..+..+...+||...+++|++++++ .++.+++|+|+++++|+ +||.|.|+++.+
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~-~~~~al~~aEl~s~~P~~sGG~y~y~~~~~ 83 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVG-MLALAFVFAILATKKPELDGGIYAYAREGF 83 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCCChhhhHHhHc
Confidence 47899999999999999999 6888887776657887778999999995 89999999999999999 999999999999
Q ss_pred CChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhh--hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 010647 95 GPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFN--LLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL 172 (505)
Q Consensus 95 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i 172 (505)
||.+||.+||.+|+.+.......+....+++..++|..+ .+++..++.++++++.+.+|++|+|..+|+|.+.+.+++
T Consensus 84 G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~~~~l 163 (473)
T TIGR00905 84 GPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPVPSILGASVLLWVFTFLVLRGVRQAAFINTITTIAKL 163 (473)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 999999999999998888777777777888888887432 345566777788888999999999999999999999999
Q ss_pred HHHHHHHHHHhccccCCccc----cccc-C-CcChhHH---HHHHHHHhcchHhhhhhhccccCcCcchhHHHHHHHHHH
Q 010647 173 CPFVVMGILSIPRIKPRRWL----VVDF-K-KVDWRGY---FNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLV 243 (505)
Q Consensus 173 ~~~~~~~i~~~~~~~~~~~~----~~~~-~-~~~~~~~---~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~ 243 (505)
+.++++++.++...+++++. +... . ...+.++ +...+|+|.|+|.+++++||+|| +|++||+++.+..++
T Consensus 164 ~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~iPrai~~~~~i~ 242 (473)
T TIGR00905 164 IPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSDVGKATVLGTLGA 242 (473)
T ss_pred HHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-cccchHHHHHHHHHH
Confidence 88777776665433333221 1100 0 1123333 33468999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCcCccccH-HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhh
Q 010647 244 VSSYLIPLLAGTGGLTSLSSEWSDGY-FAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIF 322 (505)
Q Consensus 244 ~~~y~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~ 322 (505)
+++|++...+.....|.++....++| ..++.++..+++...++.+..+++.+++.++++.+.+|++|+|||||.+|++|
T Consensus 243 ~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amardg~lP~~~ 322 (473)
T TIGR00905 243 LVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKDGLFPKIF 322 (473)
T ss_pred HHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 99999999999988888887666778 78888888888888888898999999999999999999999999999999999
Q ss_pred hccCCCCCChHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccCchhHHH
Q 010647 323 ASRSKYGTPTLSILCSATGVIFLSW------MSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVT 396 (505)
Q Consensus 323 ~~~~k~~~P~~ai~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 396 (505)
+|+||+++|++|++++.+++.++.. ..++.+.++.++...+.|++++++.+++|+|++.++ .+.|..+
T Consensus 323 ~~v~~~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~~~~~--~~~~~~~---- 396 (473)
T TIGR00905 323 GRVNKNGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVGTYPK--IKNRKAL---- 396 (473)
T ss_pred HhhCccCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc--cccchHH----
Confidence 9999889999999999888765442 257889999999999999999999999988762111 1112222
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010647 397 MLCLLPAVLLVLVMCLASLRTFIVSGGVIIVGFLLYPVLVHAK 439 (505)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 439 (505)
++.+++.+++.+.....++....++.+++++|.++|..++|.+
T Consensus 397 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 439 (473)
T TIGR00905 397 IVGVIACVYSIWLLYAAGLKYLLLGFILYAPGIIFYGRARKER 439 (473)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344455555555556667777888888899998888766544
No 14
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=1.5e-52 Score=433.35 Aligned_cols=420 Identities=21% Similarity=0.256 Sum_probs=325.2
Q ss_pred ccccCCCccchhhHHHHHHHHhcc-CCcCchhhhhhcCchHH-HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhH
Q 010647 13 KAAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLL-SLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWI 90 (505)
Q Consensus 13 ~~~~~~r~l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~-~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~ 90 (505)
.++++||++++++++++++++++| |++..+......+||.+ .+++|+++++ +.++.+++++|+++++|++||.|.|+
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i-~~~~~al~~aELas~~P~sGG~y~~~ 114 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGI-FSIVGALVYAELGTTIPKSGGEYNYI 114 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCCCchhhhH
Confidence 446799999999999999999999 67777665544366643 4688999888 49999999999999999999999999
Q ss_pred HhhhCChhHHHHHHHHHHH-hhhhHHHHHHHHHHHHHH-hchhhh-hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 010647 91 SSAFGPFWGFQEGFWKWLS-GVLDNALYPVLFLDYLKH-SLPIFN-LLIARIPALLGITGALTYLNYRGLHIVGFSAVSL 167 (505)
Q Consensus 91 ~~~~g~~~g~~~g~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 167 (505)
++.+||.+||++||.++.. +....+..+...++|+.. .+++.. +.+...+++++++++.+.+|++|+|..+|++.+.
T Consensus 115 ~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~~~~i~ 194 (501)
T TIGR00911 115 LEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLCVLLLTLVNCLSVKWATRVQDIF 194 (501)
T ss_pred HhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 9999999999999988763 345566666777777643 444332 3455567777888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccCC---cccc---cccCCc---ChhHHHHHHHHHhcchHhhhhhhccccCcCcchhHHHHH
Q 010647 168 LVFSLCPFVVMGILSIPRIKPR---RWLV---VDFKKV---DWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLG 238 (505)
Q Consensus 168 ~~~~i~~~~~~~i~~~~~~~~~---~~~~---~~~~~~---~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~ 238 (505)
+.++++.++++++.++.....+ +..+ +..... ++...+...+|+|.|+|.+++++||+|||+|++|||++.
T Consensus 195 ~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~ 274 (501)
T TIGR00911 195 TACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPIAIII 274 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHHHHHH
Confidence 9999988777666654432111 1111 111111 233344557899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCC
Q 010647 239 AVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGML 318 (505)
Q Consensus 239 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~l 318 (505)
++.+++++|++..++.....|.++...+..+.....+...+ ....++.++..++.+++.++.+.+.||++++|||||.+
T Consensus 275 s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g-~~~~~i~~~~~is~~~~~~~~~~~~sR~l~a~ardg~l 353 (501)
T TIGR00911 275 SMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLG-VMSWAMPALVGLSCFGSVNGSLFSSSRLFFVGGREGHL 353 (501)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999888887765444344444455555 45667778888899999999999999999999999999
Q ss_pred hhhhhccC-CCCCChHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccCchhHHH
Q 010647 319 PAIFASRS-KYGTPTLSILCSATGVIFLS-WMSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVT 396 (505)
Q Consensus 319 P~~~~~~~-k~~~P~~ai~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 396 (505)
|++|+|+| |+++|++|+++..+++++.. ..++..+.++.++...+.|++..++.+++|+|+|+.+||||.|... .
T Consensus 354 P~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~p~~~rp~r~p~~~---~ 430 (501)
T TIGR00911 354 PSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKRPEMNRPIKVPLFF---P 430 (501)
T ss_pred cHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHheeccCCCCCCCccCchHH---H
Confidence 99999999 78999999999988877654 3356667778888899999999999999999999999999998632 2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010647 397 MLCLLPAVLLVLVMCLASLRTFIVSGGVIIVGFLLYPVLVH 437 (505)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 437 (505)
.+.++..++++...+.+++........+.++|.++|....+
T Consensus 431 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~ 471 (501)
T TIGR00911 431 VFFLLSCLFLIILSLYSPPVGCGVGFIIMLTGVPVYFFGVW 471 (501)
T ss_pred HHHHHHHHHHhhhhhccCchhhHHHHHHHHHHHHHHHHHHH
Confidence 23333344444444444544455667778888888875333
No 15
>TIGR00909 2A0306 amino acid transporter.
Probab=100.00 E-value=2.6e-52 Score=424.86 Aligned_cols=410 Identities=23% Similarity=0.295 Sum_probs=345.8
Q ss_pred CCCccchhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhhhC
Q 010647 17 TSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFG 95 (505)
Q Consensus 17 ~~r~l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g 95 (505)
+||+++.++.+++.++.++| |++..+......+||. .+++|++++++ .++.+++++|+++++|++||.|.|+++.+|
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~l~~li~~~~-~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G 78 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPA-VILSFVLAGLT-ALFIALVYAELAAMLPVAGSPYTYAYEAMG 78 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCH-HHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCcceeeHHHHhC
Confidence 58999999999999999999 5677776655447775 56889999985 888999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhH------------HHHHHHHHHHHHHHHHhhhHHHHHH
Q 010647 96 PFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIAR------------IPALLGITGALTYLNYRGLHIVGFS 163 (505)
Q Consensus 96 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~i~~~g~~~~~~~ 163 (505)
|..||++||.+++.+....+..+..+++++..+++..+.+.+. .+..++++++++.+|++|+|..+|+
T Consensus 79 ~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~ 158 (429)
T TIGR00909 79 ELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKV 158 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 9999999999999999999999999999998887632111111 1345678888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCcccccccCCcChhH---HHHHHHHHhcchHhhhhhhccccCcCcchhHHHHHHH
Q 010647 164 AVSLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWRG---YFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAV 240 (505)
Q Consensus 164 ~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~ 240 (505)
+.+...++++.++++++.++.+.+.+++.+.. +.++.+ .+...+|+|.|+|.+++++||+|||+|++||+++.+.
T Consensus 159 ~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~ 236 (429)
T TIGR00909 159 NDILVVLKVAALLLFAALGAIHFASNNYTPFM--PMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSL 236 (429)
T ss_pred HHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCC--CCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHH
Confidence 99999999988877666666555555554321 223333 3445689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChh
Q 010647 241 VLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPA 320 (505)
Q Consensus 241 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~ 320 (505)
.++.++|++..+......|.++...+++|+.++.++.++++...++.+..+++.+++.++++.+.+|+++++||||.+|+
T Consensus 237 ~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~ 316 (429)
T TIGR00909 237 IVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPG 316 (429)
T ss_pred HHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence 99999999999999988888877777789999998888898889999999999999999999999999999999999999
Q ss_pred hhhccC-CCCCChHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccCchhHHHHH
Q 010647 321 IFASRS-KYGTPTLSILCSATGVIFLS-WMSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVTML 398 (505)
Q Consensus 321 ~~~~~~-k~~~P~~ai~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 398 (505)
+|+|+| |+++|++|+++..++++++. ...++.+.++.++...+.|++.+++.+++|+|+|+.+||||.|..+...
T Consensus 317 ~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~~~~~~~~~~~~~~~~--- 393 (429)
T TIGR00909 317 SLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPDIQRAFRCPLVPVLP--- 393 (429)
T ss_pred HHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcchHHH---
Confidence 999999 89999999999998887765 4468889999999999999999999999999999999999998876432
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 010647 399 CLLPAVLLVLVMCLASLRTFIVSGGVIIVGFLLYPV 434 (505)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 434 (505)
.+....+.+.....++.......++..+|.++|..
T Consensus 394 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~ 428 (429)
T TIGR00909 394 -VLVVSYCIYLLLNLGPGTTVWFLVWMLLGSVFYFI 428 (429)
T ss_pred -HHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHc
Confidence 22233334444455778888899999999998854
No 16
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=6e-52 Score=424.03 Aligned_cols=415 Identities=19% Similarity=0.209 Sum_probs=324.8
Q ss_pred cccCCCccchhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHh
Q 010647 14 AAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (505)
Q Consensus 14 ~~~~~r~l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~ 92 (505)
+.++||+++.+++.++++++++| |+|..+......+||. .+++|++++++ .++.+++++||++++|++||.|.|+++
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~-~~~~a~~~aEl~s~~P~~Gg~~~~~~~ 84 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA-ALLAYLLAGLL-VVFIMRMLGEMAVANPDTGSFSTYADD 84 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH-HHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 45699999999999999999999 6777765544338886 56899999995 899999999999999999999999999
Q ss_pred hhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 010647 93 AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL 172 (505)
Q Consensus 93 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i 172 (505)
.+||.+||++||.+|+++....+......+++++.++|. .+.+.+.++++++.+.+|++|+|..++++.+.+.+++
T Consensus 85 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~n~~gv~~~~~~~~~~~~~ki 160 (452)
T TIGR01773 85 AIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD----IPLWLFSLILTIVLTLTNLYSVKSYGEFEFWFALIKV 160 (452)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----CcHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999988774 3455677788888899999999999999999999998
Q ss_pred HHHHHHHHHHhc---cccCC----ccccc----ccCCcChhH---HHHHHHHHhcchHhhhhhhccccCcCcchhHHHHH
Q 010647 173 CPFVVMGILSIP---RIKPR----RWLVV----DFKKVDWRG---YFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLG 238 (505)
Q Consensus 173 ~~~~~~~i~~~~---~~~~~----~~~~~----~~~~~~~~~---~~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~ 238 (505)
+.++++++.++. ..++. ++.+. .+.+.++.+ .+...+|+|.|+|.+++++||+|||+|++|||+..
T Consensus 161 ~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~ 240 (452)
T TIGR01773 161 IAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITRATNS 240 (452)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHHHHHH
Confidence 877665554331 11111 11111 111223333 33456899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCcCc-cccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCC
Q 010647 239 AVVLVVSSYLIPLLAGTGGLTSLSSEW-SDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGM 317 (505)
Q Consensus 239 ~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~ 317 (505)
+....+++|++.........|.++... +.+|+.++.++.+++....++.++++++.+++.++.+++.||++|+|||||.
T Consensus 241 ~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~ 320 (452)
T TIGR01773 241 VIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTTSRMLYSLAERGD 320 (452)
T ss_pred HHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999888888778665332 2348888888888888888888888999999999999999999999999999
Q ss_pred ChhhhhccCCCCCChHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcc--c
Q 010647 318 LPAIFASRSKYGTPTLSILCSATGVIFLSWM-------SFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYK--V 388 (505)
Q Consensus 318 lP~~~~~~~k~~~P~~ai~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--~ 388 (505)
+|++|+|+||+++|++|+++..+++++..+. .++.+.+..+...++.|++++++.+++|+++|+.+|||+ .
T Consensus 321 lP~~~~~v~~~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~i~~r~~~~~~~~~~~~~~ 400 (452)
T TIGR01773 321 APRVFMKLNKKGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAVSQLRMRKKLKANGEAIKIRM 400 (452)
T ss_pred cCHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccC
Confidence 9999999999999999999998888765432 256677888888899999999999999988877666644 4
Q ss_pred cCchhHHHHHHHHHHHHHHHHH-HHhhHH-HHHHHHHHHHHHHHHHHHH
Q 010647 389 PLQTFGVTMLCLLPAVLLVLVM-CLASLR-TFIVSGGVIIVGFLLYPVL 435 (505)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~g~~~~~~~ 435 (505)
+.+++.... ++....+..... +.++.. .......++++..++|+..
T Consensus 401 ~~~p~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~ 448 (452)
T TIGR01773 401 WLYPWLTWL-VIIFICGILVSMLFIPSMRDEVLLTGLLTIIVLCSYLVF 448 (452)
T ss_pred CCccHHHHH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHh
Confidence 445544433 444444443333 345433 3333444444555555443
No 17
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=9.9e-52 Score=422.38 Aligned_cols=415 Identities=17% Similarity=0.215 Sum_probs=325.3
Q ss_pred ccCCCccchhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhh
Q 010647 15 AKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSA 93 (505)
Q Consensus 15 ~~~~r~l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~ 93 (505)
+++||+++.++++++++|.++| |++..++.....+||. .+++|++++++ .++.+++++|+++++|++||.|.|+++.
T Consensus 5 ~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~-~~l~~~i~~i~-~~~~a~~~aEl~s~~P~~Gg~y~y~~~~ 82 (457)
T PRK10580 5 NKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPS-VLLAYIIGGVA-AYIIMRALGEMSVHNPAASSFSRYAQEN 82 (457)
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHH-HHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4699999999999999999999 6776665543338885 58999999995 8999999999999999999999999999
Q ss_pred hCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 010647 94 FGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLC 173 (505)
Q Consensus 94 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~ 173 (505)
+||.+||++||.+++.+....+.....++.+...++|.. +...+.++++++.+.+|++|+|..++++.+++.++++
T Consensus 83 ~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~ln~~gv~~~~~~~~~~~~~~~~ 158 (457)
T PRK10580 83 LGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTV----PHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVA 158 (457)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----ChHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHH
Confidence 999999999999999998877777788888888777632 2334455666778999999999999999999999988
Q ss_pred HHHHHHHHHhc----c-cc---CCc----ccccccCCcChhHHH---HHHHHHhcchHhhhhhhccccCcCcchhHHHHH
Q 010647 174 PFVVMGILSIP----R-IK---PRR----WLVVDFKKVDWRGYF---NSMFWNLNYWDKASTLAGEVENPSKTFPKALLG 238 (505)
Q Consensus 174 ~~~~~~i~~~~----~-~~---~~~----~~~~~~~~~~~~~~~---~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~ 238 (505)
.++++++.++. . .+ +.+ +.+....+.++.+.+ ..++|+|.|+|.+++++||+|||+|++|||++.
T Consensus 159 ~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPrAi~~ 238 (457)
T PRK10580 159 TIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINS 238 (457)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHHHHHHH
Confidence 76665443321 1 11 111 111011123443433 446899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCC
Q 010647 239 AVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGML 318 (505)
Q Consensus 239 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~l 318 (505)
+.+.+.++|++..+......|.++....++|+.+..+..+.+....++.+..+.+.+++.++++.+.||++|+|||||.+
T Consensus 239 ~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~l 318 (457)
T PRK10580 239 VPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSA 318 (457)
T ss_pred HHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999988888888876666788888877777777778888888899999999999999999999999999
Q ss_pred hhhhhccCCCCCChHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---CCCCccc
Q 010647 319 PAIFASRSKYGTPTLSILCSATGVIFLSW-------MSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPD---LHRPYKV 388 (505)
Q Consensus 319 P~~~~~~~k~~~P~~ai~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~ 388 (505)
|++|+|+||+++|++|++++.++.++... ..++.+.+++++...+.|++++++.+++|++.++ .++|||.
T Consensus 319 P~~~~kv~~~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~lr~~~~~~~~~~~~f~~ 398 (457)
T PRK10580 319 PKIFSKTSRRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKFKV 398 (457)
T ss_pred CHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccc
Confidence 99999999999999999998765544321 1367889999999999999999999999987533 2358999
Q ss_pred cCchhHHHHHHHHHHHHHHHHH-HHhh-HHHHHHHHHHHHHHHHHHHHHH
Q 010647 389 PLQTFGVTMLCLLPAVLLVLVM-CLAS-LRTFIVSGGVIIVGFLLYPVLV 436 (505)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~g~~~~~~~~ 436 (505)
|.+++.. +++++...+..... +.++ .........+++++.+.|..++
T Consensus 399 ~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~ 447 (457)
T PRK10580 399 PGGVATT-IGGLIFLVFIIGLIGYHPDTRISLYVGFAWIVLLLIGWMFKR 447 (457)
T ss_pred CCccHHH-HHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8766443 33444444433333 3343 3344556667777777776643
No 18
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-52 Score=407.26 Aligned_cols=420 Identities=18% Similarity=0.176 Sum_probs=348.6
Q ss_pred cCCCccchhhHHHHHHHHhcc-CCc-CchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhh
Q 010647 16 KTSPKLTVLPLIALIFYEVSG-GPF-GVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSA 93 (505)
Q Consensus 16 ~~~r~l~~~~~~~~~~~~i~g-~~~-~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~ 93 (505)
++||+|..+++.++++|..+| |.| +.+..+.+ +||+..++++++++++ ..++..|.+||+..+|.+|+...|++|.
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~-aGP~g~li~y~i~G~~-vy~vm~sLGEma~~~P~sGsF~~ya~rf 118 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQ-AGPAGLLIAYLIIGIM-VYFVMQSLGELAVFYPVSGSFSTYATRF 118 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhc-cCcHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCchhhhhhhh
Confidence 599999999999999999999 655 77888999 9999999999999995 8999999999999999999999999999
Q ss_pred hCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 010647 94 FGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLC 173 (505)
Q Consensus 94 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~ 173 (505)
.+|-+||..||.||+.|....+....+.+..++++.|+. .+.+++..+++++...+|.+|+|..|..+.++..+|++
T Consensus 119 vdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~---v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~ 195 (541)
T COG0833 119 VDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDT---VPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVL 195 (541)
T ss_pred cCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCC---CChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHH
Confidence 999999999999999999999999999999999999743 46677778888899999999999999999999999998
Q ss_pred HHHHHHHHHhcc---ccCC-c------ccccccCCcChhHHH---HHHHHHhcchHhhhhhhccccCcCcchhHHHHHHH
Q 010647 174 PFVVMGILSIPR---IKPR-R------WLVVDFKKVDWRGYF---NSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAV 240 (505)
Q Consensus 174 ~~~~~~i~~~~~---~~~~-~------~~~~~~~~~~~~~~~---~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~ 240 (505)
.++.+++.++.. ..++ . |.....-+.++.++. ..+.|+|.|.|.+...++|.+||+|++|||+....
T Consensus 196 ~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik~vf 275 (541)
T COG0833 196 TIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIKQVF 275 (541)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHHHHHH
Confidence 888877765431 1111 1 111111122344433 33458999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCc--------CccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 010647 241 VLVVSSYLIPLLAGTGGLTSLSS--------EWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGM 312 (505)
Q Consensus 241 ~~~~~~y~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ 312 (505)
..+.++|++..+.+...+|++|. ....+|+..+.++.+.+.++.+++.+++++.+++.|+.++++||++|+|
T Consensus 276 wRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sL 355 (541)
T COG0833 276 WRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSL 355 (541)
T ss_pred HHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 99999999999999999999871 1235699999999999999999999999999999999999999999999
Q ss_pred HhcCCChhhhhccCCCCCChHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----C-
Q 010647 313 SEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWM-------SFQEILEFLNFLYAIGMLLEFAAFIKLRIKK----P- 380 (505)
Q Consensus 313 a~dg~lP~~~~~~~k~~~P~~ai~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~----~- 380 (505)
|+||..||+|+|+||+|+|++|++++.+++++..+. .|+.+.+++++..++.++.++++.+++||.. +
T Consensus 356 A~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~shirFR~A~~~QG~s 435 (541)
T COG0833 356 AKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSHIRFRRAMKAQGRS 435 (541)
T ss_pred HhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999998776632 4899999999999999999999999999743 1
Q ss_pred CCCCCccccCchhHHHHHHHHHHHHHHH---HHHHh---hHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010647 381 DLHRPYKVPLQTFGVTMLCLLPAVLLVL---VMCLA---SLRTFIVSGGVIIVGFLLYPVLVHAKD 440 (505)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~ 440 (505)
..+-|||.|.++++..+..+++.+.++. ..+.| ++........-+.+.+++|..++.++|
T Consensus 436 ~~~L~yks~~~p~g~~~~~~~~~li~i~q~y~af~p~~~~~~~F~~~Yl~~pi~i~~y~~yk~~~k 501 (541)
T COG0833 436 LDELPYKSPFGPYGPIYGLILCILILIGQGYVAFFPIGFSAGDFFAAYLGLPIFIAIYIGYKLYKK 501 (541)
T ss_pred hhhcCccCCCccHHHHHHHHHHHHHHHHcchheeecCCccHHHHHHHHHHHHHHHHHHHHheeEec
Confidence 2246899999997776655444444433 22223 233444444445555566766665554
No 19
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=2.9e-51 Score=419.62 Aligned_cols=386 Identities=18% Similarity=0.236 Sum_probs=314.8
Q ss_pred cccCCCccchhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHh
Q 010647 14 AAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (505)
Q Consensus 14 ~~~~~r~l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~ 92 (505)
++++||+++.+++.++++|.++| |+|..++.....+|| ..+++|++++++ .++.+.+++|++++.|..||.|.|+++
T Consensus 15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~-~~~~~~s~aEl~s~~~~~~~~~~ya~~ 92 (469)
T PRK11049 15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFM-LFFVMRAMGELLLSNLEYKSFSDFASD 92 (469)
T ss_pred chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 45699999999999999999999 677655544333899 468999999985 899999999999999999999999999
Q ss_pred hhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 010647 93 AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL 172 (505)
Q Consensus 93 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i 172 (505)
.+||.+||++||.+++++....+..+...+.|+..++|.. +.+.++++++++++.+|++|+|..+++|++.+.+++
T Consensus 93 ~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~----~~~~~~~~~~~~~~~iN~~g~~~~~~i~~~~~~~kl 168 (469)
T PRK11049 93 LLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDL----SDWVASLAVVLLLLSLNLATVKMFGEMEFWFAMIKI 168 (469)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999998777777888888988887743 233445566778899999999999999999999998
Q ss_pred HHHHHHHHHHhccc-----cC----Cccccc----ccCCcChhHH---HHHHHHHhcchHhhhhhhccccCcCcchhHHH
Q 010647 173 CPFVVMGILSIPRI-----KP----RRWLVV----DFKKVDWRGY---FNSMFWNLNYWDKASTLAGEVENPSKTFPKAL 236 (505)
Q Consensus 173 ~~~~~~~i~~~~~~-----~~----~~~~~~----~~~~~~~~~~---~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai 236 (505)
+.++++++.++... ++ .++.+. ...+.+|.++ +...+|+|.|+|.+++++||+|||+|++||++
T Consensus 169 ~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai 248 (469)
T PRK11049 169 VAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPRAI 248 (469)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHHHHH
Confidence 87777766654321 01 111111 1112344433 34468999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcC
Q 010647 237 LGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMG 316 (505)
Q Consensus 237 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg 316 (505)
..+.+...++|++...+.....|+++...+++|+.+...+.+++....++.++.+++.+++.++.+.+.||++|+|||||
T Consensus 249 ~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg 328 (469)
T PRK11049 249 NSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEG 328 (469)
T ss_pred HHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 98888899999999999988888888766678999998888888888888999999999999999999999999999999
Q ss_pred CChhhhhccCCCCCChHHHHHHHHHHHHHH----h-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--CC
Q 010647 317 MLPAIFASRSKYGTPTLSILCSATGVIFLS----W-----MSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLH--RP 385 (505)
Q Consensus 317 ~lP~~~~~~~k~~~P~~ai~~~~~~~~~~~----~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~ 385 (505)
.+|++|+|+||+|+|++|++++.++..+.. . ..++.+.++.++...+.|.+++++++++|+|+|+.+ ||
T Consensus 329 ~lP~~~~kv~~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~p~~~~~~p 408 (469)
T PRK11049 329 VAPKAFAKLSKRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVYRKQRPHLHEKSI 408 (469)
T ss_pred CCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Confidence 999999999988999999999877654311 1 146778888888999999999999999999988765 68
Q ss_pred ccccCchhHHHHHHHHHHHHH
Q 010647 386 YKVPLQTFGVTMLCLLPAVLL 406 (505)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~ 406 (505)
||.|.+++.. +.+++...+.
T Consensus 409 f~~p~~~~~~-~~~~~~~~~~ 428 (469)
T PRK11049 409 YKMPLGKLMC-WVCMAFFAFV 428 (469)
T ss_pred ccCcCcchHH-HHHHHHHHHH
Confidence 9998776333 3334333333
No 20
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-53 Score=413.06 Aligned_cols=399 Identities=15% Similarity=0.206 Sum_probs=331.9
Q ss_pred cccccCCCccchhhHHHHHHHHhccCCc----CchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchh
Q 010647 12 QKAAKTSPKLTVLPLIALIFYEVSGGPF----GVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYV 87 (505)
Q Consensus 12 ~~~~~~~r~l~~~~~~~~~~~~i~g~~~----~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y 87 (505)
.|+|++||++++|+.++++++.+ |... .....+.. +||...+|+|++++++ .+|++++++|++|++|++||.|
T Consensus 41 gYkqef~R~fs~~s~fg~sFs~~-g~~~~i~tsm~~gl~~-gG~~~~vwgwlIa~~~-~i~va~slaEl~Sa~PtsGgLy 117 (550)
T KOG1289|consen 41 GYKQELKREFSLFSIFGISFSLM-GLLPGIATSMAYGLGS-GGPPTLVWGWLIAGFF-SICVALSLAELCSAMPTSGGLY 117 (550)
T ss_pred CCchhhhhhhhHHHHHHHHHHHh-cchhhhhhheeecccc-CChHHHHHHHHHHHHH-HHHHHhHHHHHHhhCCCCCcHH
Confidence 59999999999999999999666 5322 33445555 7887899999999994 9999999999999999999999
Q ss_pred HhHHhh----hCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhh-----hhhhHHHHHHHHHHHHHHHHHhhhH
Q 010647 88 IWISSA----FGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFN-----LLIARIPALLGITGALTYLNYRGLH 158 (505)
Q Consensus 88 ~~~~~~----~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~g~~ 158 (505)
.|+... ++|..+|++||.+.+++....++...+.++.+.......+ ++++.+++..++..+..++|+.+.|
T Consensus 118 ~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v~~lln~~p~r 197 (550)
T KOG1289|consen 118 FWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFVHGLLNSLPTR 197 (550)
T ss_pred HHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHHHHHHhcCCcH
Confidence 999875 6778899999999999999999999999999988764332 4578889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCC-cccc------cccCCcChh-HHH------HHHHHHhcchHhhhhhhcc
Q 010647 159 IVGFSAVSLLVFSLCPFVVMGILSIPRIKPR-RWLV------VDFKKVDWR-GYF------NSMFWNLNYWDKASTLAGE 224 (505)
Q Consensus 159 ~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~-~~~~------~~~~~~~~~-~~~------~~~~~a~~G~e~~~~~~~E 224 (505)
+..+++.+...+.++.+++..|..+...+.. ++.. ...+..+|. ..+ ....|.++|+|+++|++||
T Consensus 198 ~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE 277 (550)
T KOG1289|consen 198 VLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEE 277 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHH
Confidence 9999999999999988887777655432221 1221 011122343 222 2346899999999999999
Q ss_pred ccCcCcchhHHHHHHHHHHHHHHHHHHHHHhhccCCCC---c-CccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 010647 225 VENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLS---S-EWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEA 300 (505)
Q Consensus 225 ~k~p~~~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (505)
+|||+|+.||||+.++.+..++..+..+.+..++++|. . +..++|+.+++.+..|+.....+..+.+++.+.+..+
T Consensus 278 ~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~ 357 (550)
T KOG1289|consen 278 TKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGIS 357 (550)
T ss_pred hcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceEehhHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999544 2 2336899999999999888888888888999999999
Q ss_pred HhhhhhHHHHHHHhcCCCh--hhhhccCC-CCCChHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHHHHH
Q 010647 301 EMSGDAFQLLGMSEMGMLP--AIFASRSK-YGTPTLSILCSATGVIFLSWM------SFQEILEFLNFLYAIGMLLEFAA 371 (505)
Q Consensus 301 ~~~~~sR~l~a~a~dg~lP--~~~~~~~k-~~~P~~ai~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~ 371 (505)
++.+.||..|+.||||.|| ++++++|+ +++|.+|+++.+++++++.++ +++++.+.+.+..+++|.++.+.
T Consensus 358 s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Alfs~a~i~l~~Ay~iP~~~ 437 (550)
T KOG1289|consen 358 SLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNALFSAAAIALFIAYAIPIFC 437 (550)
T ss_pred HHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 9999999999999999999 89999995 599999999999999887743 58999999999999999999998
Q ss_pred HHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHhh
Q 010647 372 FIKLRIKKPDLHRPYKVPLQTFGVTMLCLLPAVLLVLVMCLAS 414 (505)
Q Consensus 372 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (505)
.+.++|+ .-.++||+.+...-...++++++.+++....++|.
T Consensus 438 rlf~~r~-~f~~gp~~lGk~s~p~~~i~v~w~lf~~vil~fP~ 479 (550)
T KOG1289|consen 438 RLFFGRD-DFRPGPFNLGKFSKPIGIIAVLWVLFMIVILCFPS 479 (550)
T ss_pred heeeccc-ccCCCCccccccccchHHHHHHHHHHHHHHHhCCc
Confidence 8777666 34567888776555555666888888888888773
No 21
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=2.6e-51 Score=422.57 Aligned_cols=417 Identities=18% Similarity=0.174 Sum_probs=319.7
Q ss_pred CCccchhhHHHHHHHHhcc-CCcCchh-hhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCchhHhHHhhh
Q 010647 18 SPKLTVLPLIALIFYEVSG-GPFGVED-SVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPE-NGGYVIWISSAF 94 (505)
Q Consensus 18 ~r~l~~~~~~~~~~~~i~g-~~~~~~~-~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~-~Gg~y~~~~~~~ 94 (505)
||+++.+++.++++|.++| |++..+. .+.. +||...+++|++++++ .++.+++++||++++|+ +||.|.|+++.+
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~-~Gp~~~i~~~~i~~~~-~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~ 78 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALAT-GGPAGLLIGYAIMGSI-IYCVMQSLGEMATFYPVVSGSFATYASRFV 78 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHh-cCCHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCCHHHHHHHHc
Confidence 6899999999999999999 6775554 4555 8987778999999995 89999999999999996 556778999999
Q ss_pred CChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 010647 95 GPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCP 174 (505)
Q Consensus 95 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~ 174 (505)
||.+||.+||.+|+++....+......+.++..+.+.. +...+..+++++.+++|++|+|..++++.+.+.++++.
T Consensus 79 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~in~~gv~~~~~~~~~~~~~ki~~ 154 (478)
T TIGR00913 79 DPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKV----NPAVWIAIFYVFIVIINLFGVKGYGEAEFWFSSIKILA 154 (478)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888766532 22222345556788999999999999999999888776
Q ss_pred HHHHHHHHhccc--cC---C-----cccc-cccCCc----ChhHH---HHHHHHHhcchHhhhhhhccccCcCcchhHHH
Q 010647 175 FVVMGILSIPRI--KP---R-----RWLV-VDFKKV----DWRGY---FNSMFWNLNYWDKASTLAGEVENPSKTFPKAL 236 (505)
Q Consensus 175 ~~~~~i~~~~~~--~~---~-----~~~~-~~~~~~----~~~~~---~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai 236 (505)
++.+++.++... +. . ++.+ ..+.+. .+.++ +...+|+|.|+|.+++++||+|||+|++|||+
T Consensus 155 l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai 234 (478)
T TIGR00913 155 IIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKSIPRAA 234 (478)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhHHHHHH
Confidence 665554433211 11 0 0110 011111 12333 34457999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCC--c-Cc------cccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 010647 237 LGAVVLVVSSYLIPLLAGTGGLTSLS--S-EW------SDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAF 307 (505)
Q Consensus 237 ~~~~~~~~~~y~~~~~~~~~~~~~~~--~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR 307 (505)
+.+..+++++|++..++.....|.++ . +. ..+|+....+..+.+....++.++++++.+++.++++.+.+|
T Consensus 235 ~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR 314 (478)
T TIGR00913 235 KRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILISVLSAANSSLYASSR 314 (478)
T ss_pred HHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999888888888654 2 11 136877777777777888888899999999999999999999
Q ss_pred HHHHHHhcCCChhhhhccCCCCCChHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-
Q 010647 308 QLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWM-------SFQEILEFLNFLYAIGMLLEFAAFIKLRIKK- 379 (505)
Q Consensus 308 ~l~a~a~dg~lP~~~~~~~k~~~P~~ai~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~- 379 (505)
++|+|||||.+|++|+|+||+++|++|++++.+++++..+. .++.+.++++....+.|++.+++.+++|++.
T Consensus 315 ~l~a~ardg~lP~~f~k~~~~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~i~~r~~~~ 394 (478)
T TIGR00913 315 TLYALAHQGLAPKIFAYVDRRGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGFFTWMCICLSHIRFRKAMK 394 (478)
T ss_pred HHHHHHhCCcccHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998887654321 3778889999999999999999999998752
Q ss_pred ----CCCCCCccccCchhHHHHHHHHHHHHHHHHHHH----h---hHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010647 380 ----PDLHRPYKVPLQTFGVTMLCLLPAVLLVLVMCL----A---SLRTFIVSGGVIIVGFLLYPVLVHAKDR 441 (505)
Q Consensus 380 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 441 (505)
++.+||||.|.+++...+. ++..++..+...+ | +..........+..+.++|..++.++|+
T Consensus 395 ~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (478)
T TIGR00913 395 AQGRSLDELPYKSQTGPYGSYYA-LFFNILILIAQGYVAFAPVKFSAKSFFEAYLSLPIFIALYIGHKVYKRD 466 (478)
T ss_pred hcCCCcccCCccCCCcchHHHHH-HHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3457899999877544433 3333333322222 2 2334445555556666667666665543
No 22
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=2.2e-51 Score=416.89 Aligned_cols=408 Identities=19% Similarity=0.243 Sum_probs=321.5
Q ss_pred cCCCccchhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhhh
Q 010647 16 KTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAF 94 (505)
Q Consensus 16 ~~~r~l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~ 94 (505)
+.+|++++++++++.+|+++| |++.+|..+.. +||. .+++|+++++. +++.+++++||++++|++||.|.|++| +
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~-~G~~-~i~~wli~~~~-~l~~al~~aEL~s~~P~~GG~y~y~~~-~ 77 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLAS-IGSI-AIWGWIISIIG-AMSLAYVYARLATKNPQQGGPIAYAGE-I 77 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHH-hHHH-HHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCChhHHHHH-H
Confidence 457999999999999999999 78988888877 7885 68999999995 999999999999999999999999999 8
Q ss_pred CChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 010647 95 GPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCP 174 (505)
Q Consensus 95 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~ 174 (505)
||.+||.+||.||................|+..++|...++....+++++++++.+++|++|+|..++++.+..+++++.
T Consensus 78 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~~~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~~~li~ 157 (435)
T PRK10435 78 SPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDPIPAGIACIAIVWVFTFVNMLGGTWVSRLTTIGLVLVLIP 157 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999998766666666677778888888765444555566777888899999999999999999988887776
Q ss_pred HHHHHHHHhccccCCccccc-c-cCCcChhHH---HHHHHHHhcchHhhhhhhccccCcCcchhHHHHHHHHHHHHHHHH
Q 010647 175 FVVMGILSIPRIKPRRWLVV-D-FKKVDWRGY---FNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLI 249 (505)
Q Consensus 175 ~~~~~i~~~~~~~~~~~~~~-~-~~~~~~~~~---~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~~~~y~~ 249 (505)
++.+.+.+..+.+++++.+. . ..+.++.++ +...+|+|.|+|.+++++||+|||+|++|||++.+..++.++|++
T Consensus 158 ~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~ilYil 237 (435)
T PRK10435 158 VVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIIYIA 237 (435)
T ss_pred HHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHHHHHHHH
Confidence 66555555443333322110 0 111223333 345689999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhccCCCC
Q 010647 250 PLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYG 329 (505)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~k~~ 329 (505)
..+......|.++.+.+++|+.+.+++..+++...++.++.+++++++.++++...+|..+++||||.+|++|+|+||+|
T Consensus 238 ~~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~lP~~f~k~nk~g 317 (435)
T PRK10435 238 ATQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNFPKVYGEVDKNG 317 (435)
T ss_pred HHHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCcCC
Confidence 99999999999888777889999999999998888888888999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHH----h---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccCchhHHH
Q 010647 330 TPTLSILCSATGVIFLS----W---------MSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVT 396 (505)
Q Consensus 330 ~P~~ai~~~~~~~~~~~----~---------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 396 (505)
+|++|++++.++..++. + ..++.+.++++...++.|++++++.+++| +++.++++ .+
T Consensus 318 ~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ir~~--~~~~~~~~----~~---- 387 (435)
T PRK10435 318 IPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRFE--GVNIRNFV----SL---- 387 (435)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchhHHH----HH----
Confidence 99999999877664432 1 14788999999999999999999987553 22222221 12
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010647 397 MLCLLPAVLLVLVMCLASLRTFIVSGGVIIVGFLLYPVLVHAKD 440 (505)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 440 (505)
+.+.+..+++.+..... .+.....+++++.+.|+.+.+|++
T Consensus 388 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 428 (435)
T PRK10435 388 ICSVLGCVFCFIALMGA---SSFELAGTFIVSLIILMFYARKMH 428 (435)
T ss_pred HHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444455554444422 333444444555555555544444
No 23
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=100.00 E-value=7.8e-51 Score=416.73 Aligned_cols=410 Identities=21% Similarity=0.245 Sum_probs=334.3
Q ss_pred CccchhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-CchhHhHHhhhCC
Q 010647 19 PKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPEN-GGYVIWISSAFGP 96 (505)
Q Consensus 19 r~l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~-Gg~y~~~~~~~g~ 96 (505)
|++++++++++++++++| |+|..+..+...+||...+++|++++++ .++.+++++|+++++|++ ||.|.|+++.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~-~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVG-MLALAFSFQNLANKKPELDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCCChhhhHHhHcCc
Confidence 789999999999999999 6888887776657887788999999995 899999999999999996 5999999999999
Q ss_pred hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhh--hhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 010647 97 FWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNL--LIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCP 174 (505)
Q Consensus 97 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~ 174 (505)
.+||++||.+|+++.............++.+++|.... +.+...+..++++..+.+|++|+|..+++|.+.+.+++++
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ki~~ 159 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIAKLVP 159 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 99999999999998777667776777777777775432 2344555667777889999999999999999999999988
Q ss_pred HHHHHHHHhccccCCccccc----cc----CCcChh---HHHHHHHHHhcchHhhhhhhccccCcCcchhHHHHHHHHHH
Q 010647 175 FVVMGILSIPRIKPRRWLVV----DF----KKVDWR---GYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLV 243 (505)
Q Consensus 175 ~~~~~i~~~~~~~~~~~~~~----~~----~~~~~~---~~~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~ 243 (505)
++++++.++...+.+.+.+. .. ....+. ..+...+|+|.|+|.+++++||.|| +|++||++..+...+
T Consensus 160 l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~-~k~ip~ai~~~~~~v 238 (468)
T TIGR03810 160 LFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK-RSDVGKATVIGLIGV 238 (468)
T ss_pred HHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC-cccchHHHHHHHHHH
Confidence 77776655443332222110 00 011111 2334568999999999999999998 799999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCcCccccH-HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhh
Q 010647 244 VSSYLIPLLAGTGGLTSLSSEWSDGY-FAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIF 322 (505)
Q Consensus 244 ~~~y~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~ 322 (505)
.++|++..+......|.++....++| ..++.++..+++...++.+.++++.+++.++++.+.+|++|+|||||.+|++|
T Consensus 239 ~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~f 318 (468)
T TIGR03810 239 LAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYF 318 (468)
T ss_pred HHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHH
Confidence 99999999999998887776554555 67788888888888999999999999999999999999999999999999999
Q ss_pred hccCCCCCChHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCCCCccccCchhHH
Q 010647 323 ASRSKYGTPTLSILCSATGVIFLSW------MSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKP-DLHRPYKVPLQTFGV 395 (505)
Q Consensus 323 ~~~~k~~~P~~ai~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~~~~~~~~ 395 (505)
+|+||+|+|++|++++.+++.++.. ..++.+.++.+...++.|++++++.+++|+|++ +..|+++
T Consensus 319 ~k~~~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~~~~~-------- 390 (468)
T TIGR03810 319 GKENANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWRGGQERGRRKQ-------- 390 (468)
T ss_pred HhhCCCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh--------
Confidence 9999999999999998888755442 247889999999999999999999999987763 2223333
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010647 396 TMLCLLPAVLLVLVMCLASLRTFIVSGGVIIVGFLLYPVLVHA 438 (505)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 438 (505)
.+++.+..+++++..+..++.....+.+..++|+.+|+..|++
T Consensus 391 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~ 433 (468)
T TIGR03810 391 LLIGLVALLYAVWLIYAAGLKYLLLSAILYAPGIYFYARARKE 433 (468)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2445666777777777888888888899999999888765443
No 24
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=2.1e-50 Score=410.41 Aligned_cols=405 Identities=17% Similarity=0.186 Sum_probs=323.6
Q ss_pred HHHHHhcc-CCcCchh-hhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhhhCChhHHHHHHHH
Q 010647 29 LIFYEVSG-GPFGVED-SVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWK 106 (505)
Q Consensus 29 ~~~~~i~g-~~~~~~~-~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~ 106 (505)
+++|+++| |+|..++ .+.. +||. .+++|++++++ .++.+++++||++++|++||.|.|++|.+||.+||.+||.+
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~-aG~~-~ll~~~i~gi~-~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~ 78 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAE-AGPA-VLLAYLFAGLL-VVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLY 78 (446)
T ss_pred eeecchhHhHHHHHhHHHHHh-cChH-HHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHH
Confidence 46778888 6775555 4455 8885 68999999995 89999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010647 107 WLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRI 186 (505)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~ 186 (505)
|+.+....+......+.++..+.| ..+...++++++++.+.+|++|+|..+++|.+.+.++++.++++++.++...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~~~~~ 154 (446)
T PRK10197 79 WWFWVLVIPLEANIAAMILHSWVP----GIPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAVAI 154 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc----cCcHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999998888888777777776655 2345677788888899999999999999999999999887777666544321
Q ss_pred ---cC----Ccccc----cccCCcChhHHH---HHHHHHhcchHhhhhhhccccCcCcchhHHHHHHHHHHHHHHHHHHH
Q 010647 187 ---KP----RRWLV----VDFKKVDWRGYF---NSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLL 252 (505)
Q Consensus 187 ---~~----~~~~~----~~~~~~~~~~~~---~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~~~~y~~~~~ 252 (505)
++ .++.+ ....+.++.++. ...+|+|.|+|.+++++||+|||+|++|||+..+...+.++|++..+
T Consensus 155 ~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil~~~ 234 (446)
T PRK10197 155 SGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLCSIF 234 (446)
T ss_pred cCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11101 011133444443 44679999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCcCc-cccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhccCCCCCC
Q 010647 253 AGTGGLTSLSSEW-SDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTP 331 (505)
Q Consensus 253 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~k~~~P 331 (505)
+.....|+++.+. ...++..+.+..+++....++.+.++++.+++.|+++.+.+|++|++||||.+|++|+|+||+++|
T Consensus 235 ~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~~~~~P 314 (446)
T PRK10197 235 VVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINRSKTP 314 (446)
T ss_pred HHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCcCCCc
Confidence 9999888876332 234677778888888888888898999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCCCCCCccccCchhHHHHHHHHH
Q 010647 332 TLSILCSATGVIFLSWM-------SFQEILEFLNFLYAIGMLLEFAAFIKLRIK--KPDLHRPYKVPLQTFGVTMLCLLP 402 (505)
Q Consensus 332 ~~ai~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~ 402 (505)
++|++++.+++++..+. .++.+.++.+...++.|.+++++.+++||+ +++.++|||.|.+++...+. +..
T Consensus 315 ~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~~~~~~~~~~~~~~~p~~~~~~-i~~ 393 (446)
T PRK10197 315 YVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILRAEGSEIRLRMWLYPWLTWLV-IGF 393 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCCcchHHHHH-HHH
Confidence 99999998777654422 478899999999999999999999999986 34456789998877555443 444
Q ss_pred HHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHH-HHHHhhcc
Q 010647 403 AVLLVLVMCL-ASLRTFIVSGGVIIVGFLLYP-VLVHAKDR 441 (505)
Q Consensus 403 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~ 441 (505)
..+......+ ++.....+...++++++..|+ ..+|++|.
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (446)
T PRK10197 394 ITFVLVVMLFRPAQQLEVISTGLLAIGIICTVPIMARWKKL 434 (446)
T ss_pred HHHHHHHHHHCcchHHHHHHHHHHHHHHHhhhHHHhhhccc
Confidence 4443444343 455566667888888888888 66665554
No 25
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-50 Score=382.91 Aligned_cols=418 Identities=18% Similarity=0.214 Sum_probs=351.4
Q ss_pred ccccCCCccchhhHHHHHHHHhcc-CCc-CchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhH
Q 010647 13 KAAKTSPKLTVLPLIALIFYEVSG-GPF-GVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWI 90 (505)
Q Consensus 13 ~~~~~~r~l~~~~~~~~~~~~i~g-~~~-~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~ 90 (505)
+++++||.|+.+++-.+++|..+| |.| +.+..+.. +||. .++++++++++ ...+..+++||..+-|.+|+.-+|+
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~-AGPS-vlLaY~I~G~~-~f~iMRaLGEm~~~~p~~gSF~~~a 83 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAM-AGPS-VLLAYLIAGIF-VFLIMRALGEMLVANPVSGSFSDYA 83 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhh-hCcH-HHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCcHHHHH
Confidence 346799999999999999999999 654 78888898 9996 58999999985 7788999999999999999999999
Q ss_pred HhhhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 010647 91 SSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVF 170 (505)
Q Consensus 91 ~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~ 170 (505)
++.+||..||++||.||+.++....+...+++.|+++++|+ .+.|+.+++++.+...+|..++|.++..+.++..+
T Consensus 84 ~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~----vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlI 159 (462)
T COG1113 84 RKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD----VPQWVFALAAVVLLLAVNLISVKVFGELEFWFALI 159 (462)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999994 47788888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccc-----cCC---cc----cccccCCcChhHHH---HHHHHHhcchHhhhhhhccccCcCcchhHH
Q 010647 171 SLCPFVVMGILSIPRI-----KPR---RW----LVVDFKKVDWRGYF---NSMFWNLNYWDKASTLAGEVENPSKTFPKA 235 (505)
Q Consensus 171 ~i~~~~~~~i~~~~~~-----~~~---~~----~~~~~~~~~~~~~~---~~~~~a~~G~e~~~~~~~E~k~p~~~ip~a 235 (505)
|+..++.+++.++.-. .++ ++ ....+-|.++.+++ ...+|+|.|.|.+...+.|+|||+|.+|||
T Consensus 160 KV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkA 239 (462)
T COG1113 160 KVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKA 239 (462)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHH
Confidence 9988888777654311 111 11 11122355676655 456899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhc
Q 010647 236 LLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEM 315 (505)
Q Consensus 236 i~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d 315 (505)
+-.-...+.++|+...+.+....|+++...+.+|+.+.++..+-+..+.+++..++.+.+++.|+.+++.+|++|++|+|
T Consensus 240 in~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~ 319 (462)
T COG1113 240 INSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQ 319 (462)
T ss_pred HhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccccccccchHHHHHhhc
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhhccCCCCCChHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--CCc
Q 010647 316 GMLPAIFASRSKYGTPTLSILCSATGVIFLSWM-------SFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLH--RPY 386 (505)
Q Consensus 316 g~lP~~~~~~~k~~~P~~ai~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~ 386 (505)
|..|+.++|++|+++|++|++++.++..+...+ .|+.+.+..+......|+++.++.+++||++++.. .+|
T Consensus 320 g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk~~~~~~~~~~f 399 (462)
T COG1113 320 GDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKLRKAKPAEGKKLKF 399 (462)
T ss_pred CcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccCccc
Confidence 999999999999999999999998887655533 48889999999999999999999999999654433 459
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHh-hH-HHHHHHHHHHHHHHHHHHHHHHh
Q 010647 387 KVPLQTFGVTMLCLLPAVLLVLVMCLA-SL-RTFIVSGGVIIVGFLLYPVLVHA 438 (505)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~g~~~~~~~~~~ 438 (505)
|+|.+++..++ +++++++.+..+.+. +. .....+.+++++..+.|...+++
T Consensus 400 km~~~p~~~~l-~l~fl~~vlv~m~~~~~t~~~~~~~~~~~~~l~i~~~~~~~~ 452 (462)
T COG1113 400 KMPLYPFTNYL-TLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVKRKK 452 (462)
T ss_pred ccccccHHHHH-HHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 99988865554 444455544444443 33 33444444554444445444433
No 26
>PRK11021 putative transporter; Provisional
Probab=100.00 E-value=1.1e-48 Score=395.04 Aligned_cols=352 Identities=20% Similarity=0.212 Sum_probs=283.6
Q ss_pred cchhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhhhCChhH
Q 010647 21 LTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWG 99 (505)
Q Consensus 21 l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g 99 (505)
+++|+.+++.+|+|+| |+|..++.....+|| ..+++|++++++ .++.+++++|+++++|++||.|.|+++.+||++|
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~-~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~g 78 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILL-IFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLG 78 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhH
Confidence 5789999999999999 788888777665888 468999999995 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010647 100 FQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMG 179 (505)
Q Consensus 100 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~ 179 (505)
|.+||.++..+....+.......+++...+|.. .++...+.++++++.+.+|++|+|..+|++.+...+.+..++...
T Consensus 79 f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i~~~~~ 156 (410)
T PRK11021 79 RVTGWLFLSVIPVGLPAALQIAAGFGQALFGWS--SWQLLLAELLTLALLWLLNLRGASSSANLQTVIALLIVALVVAIW 156 (410)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCC--CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998776666655555667777666532 244456667778888999999999999999987765443322221
Q ss_pred HHHhccccCCcccccccCCcChhHHH---HHHHHHhcchHhhhhhhccccCcCcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 010647 180 ILSIPRIKPRRWLVVDFKKVDWRGYF---NSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTG 256 (505)
Q Consensus 180 i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~~~~y~~~~~~~~~ 256 (505)
.....++.++......+.+|.+.. ...+|+|.|+|.+++++||+|||+|++|||++.+.++++++|++..++...
T Consensus 157 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~~~~ 234 (410)
T PRK11021 157 --WAGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVVVLH 234 (410)
T ss_pred --HHcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112222333211112233555443 456899999999999999999999999999999999999999999988776
Q ss_pred ccCCCCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhccCCCCCChHHHH
Q 010647 257 GLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSIL 336 (505)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~k~~~P~~ai~ 336 (505)
..+.++....+.|..++.++..|+....++.+..+++.+++.++.+.+.+|++|+|||||.+|++|+|+||+++|++|++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k~~~~~tP~~ail 314 (410)
T PRK11021 235 FPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLARLSARGVPVNALN 314 (410)
T ss_pred cCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHhhccCCCcHHHHH
Confidence 66655544445677787877777777777788888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010647 337 CSATGVIFLSW------MSFQEILEFLNFLYAIGMLLEFAAFIKLRIK 378 (505)
Q Consensus 337 ~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~ 378 (505)
++.+++.+..+ .+++.+.++.+...++.|++.+++.+++++|
T Consensus 315 ~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~~l~~~ 362 (410)
T PRK11021 315 AVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAACKLLKG 362 (410)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 98887765542 2578888999999999999999999988764
No 27
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=100.00 E-value=5.3e-49 Score=403.92 Aligned_cols=399 Identities=16% Similarity=0.104 Sum_probs=307.1
Q ss_pred ccccccCCCccchhhHHHHHHHHh-cc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhH
Q 010647 11 QQKAAKTSPKLTVLPLIALIFYEV-SG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVI 88 (505)
Q Consensus 11 ~~~~~~~~r~l~~~~~~~~~~~~i-~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~ 88 (505)
..|+|++||++++++.++++++.+ ++ |++.........+|| ..+++|++++++ .++.+++++||++++|++||.|+
T Consensus 5 ~g~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~-~l~~als~aEL~s~~P~aGG~Y~ 82 (475)
T TIGR03428 5 FGYQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVG-QLLVALNFAELAARYPISGAIYQ 82 (475)
T ss_pred cCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCCHHH
Confidence 367889999999999999999876 44 666655444333888 579999999995 99999999999999999999999
Q ss_pred hHHhhhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhch---------hhh---hhhhHHHHHHHHHHHHHHHHHhh
Q 010647 89 WISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLP---------IFN---LLIARIPALLGITGALTYLNYRG 156 (505)
Q Consensus 89 ~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~---~~~~~~~~~~~~~~~~~~i~~~g 156 (505)
|+++.+||.+||++||.+++++....+........++..+.+ +.. ..++..+++.+++++++.+|++|
T Consensus 83 ~~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g 162 (475)
T TIGR03428 83 WSRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIG 162 (475)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999987776666666555543321 110 12455677778888899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCc---cccc-ccCCcChhH-H---HHHHHHHhcchHhhhhhhccccCc
Q 010647 157 LHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRR---WLVV-DFKKVDWRG-Y---FNSMFWNLNYWDKASTLAGEVENP 228 (505)
Q Consensus 157 ~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~---~~~~-~~~~~~~~~-~---~~~~~~a~~G~e~~~~~~~E~k~p 228 (505)
+|..++++.+...++++.++++++..+.+.+.+. +... .....+|.. + ....+|+|.|+|.++|++||+|||
T Consensus 163 ~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP 242 (475)
T TIGR03428 163 VEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNP 242 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCc
Confidence 9999999999999988777666655543332111 1111 011123222 2 223579999999999999999999
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhccCCCC---cCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010647 229 SKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLS---SEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGD 305 (505)
Q Consensus 229 ~~~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (505)
+|++|||++.++.++.++|.+..+......++.+ .+..+.| .+..+..++.....+....+++.+++.++.+.+.
T Consensus 243 ~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~ 320 (475)
T TIGR03428 243 RRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLP--YVLSAVLDSPWGTVLLVDVAIAILVCTLAIQTAG 320 (475)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchH--HHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888887777776665432 2222334 3344444443444555666788999999999999
Q ss_pred hHHHHHHHhcCCCh--hhhhccC-CCCCChHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010647 306 AFQLLGMSEMGMLP--AIFASRS-KYGTPTLSILCSATGVIFLSWM------SFQEILEFLNFLYAIGMLLEFAAFIKLR 376 (505)
Q Consensus 306 sR~l~a~a~dg~lP--~~~~~~~-k~~~P~~ai~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~r 376 (505)
||++|++||||.+| ++|+|+| |+++|++|+++..+++.++.+. .|+.+.++.+....++|+++.+..+..|
T Consensus 321 sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~~~~~l~~~ 400 (475)
T TIGR03428 321 SRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLIYLAYLLVTVPLLLRR 400 (475)
T ss_pred HHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 5899999 8999999999999888766543 4788999999999999999888877666
Q ss_pred hhC------CCCCCCccccCchhHHHHHHHHHHHHHHHHHHHh
Q 010647 377 IKK------PDLHRPYKVPLQTFGVTMLCLLPAVLLVLVMCLA 413 (505)
Q Consensus 377 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (505)
+|. +.+++||+++.+....+++++++.++..+..++|
T Consensus 401 ~~~~~~~~~~~~~g~f~lg~~g~~vn~~a~~~~~~~~v~~~~P 443 (475)
T TIGR03428 401 LRGWPRGDQTDPAGLFSLGRWGLPVNILAVVYGALMVVNLSWP 443 (475)
T ss_pred HhccCCccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHCC
Confidence 442 1256789998777888888888888888888877
No 28
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=6.9e-49 Score=404.73 Aligned_cols=399 Identities=16% Similarity=0.192 Sum_probs=301.4
Q ss_pred cccccCCCccchhhHHHHHHHHhcc--CCcC-chhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhH
Q 010647 12 QKAAKTSPKLTVLPLIALIFYEVSG--GPFG-VEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVI 88 (505)
Q Consensus 12 ~~~~~~~r~l~~~~~~~~~~~~i~g--~~~~-~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~ 88 (505)
.+++++||+++.++.++++++.+.. +++. ....+.. +||...+++|++++++ .++.+++++||++++|++||.|+
T Consensus 5 g~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~Gp~~~i~~~~i~gi~-~l~~~~~~aEl~s~~P~~Gg~y~ 82 (482)
T TIGR00907 5 GYKPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSS-GGAMSIVWGWIIAGAG-SICIALSLAELSSAYPTSGGQYF 82 (482)
T ss_pred CCcceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccchhHHHHHHHHH-HHHHHHHHHHHHhhCCCCccHHH
Confidence 5778899999999999999986521 3433 2334556 8987789999999995 89999999999999999999999
Q ss_pred hHHhhhC----ChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhch----h--h-hhhhhHHHHHHHHHHHHHHHHHhhh
Q 010647 89 WISSAFG----PFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLP----I--F-NLLIARIPALLGITGALTYLNYRGL 157 (505)
Q Consensus 89 ~~~~~~g----~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~-~~~~~~~~~~~~~~~~~~~i~~~g~ 157 (505)
|+++.+| +..||++||.+++++....+......++++...+. . + .+++....+.++++++++.+|++|+
T Consensus 83 ~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~ 162 (482)
T TIGR00907 83 WSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALINSLPT 162 (482)
T ss_pred HHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHHHHHHhhH
Confidence 9999986 57799999999999999888888888888775432 1 1 2345556677778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccC----Cc--ccccc-----cCCcChh--HHHHHHHHHhcchHhhhhhhcc
Q 010647 158 HIVGFSAVSLLVFSLCPFVVMGILSIPRIKP----RR--WLVVD-----FKKVDWR--GYFNSMFWNLNYWDKASTLAGE 224 (505)
Q Consensus 158 ~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~----~~--~~~~~-----~~~~~~~--~~~~~~~~a~~G~e~~~~~~~E 224 (505)
|..++++++..+++++.++++++..+...++ .+ +.+.. +.+.++. ..+....|+|.|+|.+++++||
T Consensus 163 k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E 242 (482)
T TIGR00907 163 KWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEE 242 (482)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHh
Confidence 9999999999888877766544443322111 11 11111 1112221 1123356999999999999999
Q ss_pred ccCcCcchhHHHHHHHHHHHHHHHHHHHHHhhccCC-CCcCc--cccHHHHHHHHhcch-HHHHHHHHHHHHHHHHHHHH
Q 010647 225 VENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTS-LSSEW--SDGYFAEVGMLIGGF-WLKWWIQAASAMSNLGLFEA 300 (505)
Q Consensus 225 ~k~p~~~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 300 (505)
+|||+|++|||++.++.+..+++++..+......++ ++..+ .++|+.+++.+..+. ....++...++++.+++.++
T Consensus 243 ~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 322 (482)
T TIGR00907 243 IENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLILVTSFFCAIT 322 (482)
T ss_pred cCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988776655555444444432 22212 236888888776444 66667778888889999999
Q ss_pred HhhhhhHHHHHHHhcCCCh--hhhhccC-CCCCChHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHHHHH
Q 010647 301 EMSGDAFQLLGMSEMGMLP--AIFASRS-KYGTPTLSILCSATGVIFLSWM------SFQEILEFLNFLYAIGMLLEFAA 371 (505)
Q Consensus 301 ~~~~~sR~l~a~a~dg~lP--~~~~~~~-k~~~P~~ai~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~ 371 (505)
++.+.||++|+|||||.+| ++|+|+| |+++|++|++++.+++.++.+. .++.+.++.++...++|+++.++
T Consensus 323 ~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~ 402 (482)
T TIGR00907 323 CMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVSYVIPIIC 402 (482)
T ss_pred HHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 9999999 5699999999999888765533 58889999999999999998887
Q ss_pred HHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHh
Q 010647 372 FIKLRIKKPDLHRPYKVPLQTFGVTMLCLLPAVLLVLVMCLA 413 (505)
Q Consensus 372 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (505)
.++.|++ ++.+||||.+........+++++..+..+..++|
T Consensus 403 ~l~~~~~-~~~~~~f~lg~~~~~~~~~~~~~~~~~~v~~~~P 443 (482)
T TIGR00907 403 KLAKGRN-TIAPGPFWLGKYGFFVNAVAVAWTVFSSVLFSFP 443 (482)
T ss_pred HHHhcCC-CCCCCCCcCCcchHHHHHHHHHHHHHHHhheeCC
Confidence 7654443 4667899985544455555666666655555443
No 29
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=3.6e-47 Score=390.91 Aligned_cols=393 Identities=21% Similarity=0.282 Sum_probs=284.0
Q ss_pred CCCccchhhHHHHHHHHhccCCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-CCCchhHhHHhhhC
Q 010647 17 TSPKLTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFP-ENGGYVIWISSAFG 95 (505)
Q Consensus 17 ~~r~l~~~~~~~~~~~~i~g~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P-~~Gg~y~~~~~~~g 95 (505)
.+||+++++++++.++.+.+ ....+ .... .|+. .+.-|+++++++.+|.+++++||++++| .+||.|.|+++.+|
T Consensus 2 ~~~~l~~~~~~~~~~~~v~~-~~~~~-~~a~-~G~~-~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G 77 (507)
T TIGR00910 2 KAKKLSLFGFFAITASMVLA-VYEYP-TFAT-SGFH-LVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLG 77 (507)
T ss_pred CCcEeeHHHHHHHHHHHHHH-HHhhH-HHHH-hhHH-HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccC
Confidence 36789999999999977753 34444 2344 5653 3455666677668999999999999997 89999999999999
Q ss_pred ChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhc--hhhh-hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 010647 96 PFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSL--PIFN-LLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL 172 (505)
Q Consensus 96 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i 172 (505)
|++||.++|.+|+.+....+...........+.. +... +++...+..++++++++++|++|.|..++++.+......
T Consensus 78 ~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~~i~~~~~~ 157 (507)
T TIGR00910 78 ERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILKFPALNEDPIIKFIAALIIFWALAFSQFGGTKRTAKIAKAGFFAGI 157 (507)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 9999999999999877544443322232223222 3222 345556666778889999999999999999988655443
Q ss_pred HH-HHHHHHHHhc---cccCCc--cc--ccc--cCCcChhHHHHHHHHHhcchHhhhhhhccccCcCcchhHHHHHHHHH
Q 010647 173 CP-FVVMGILSIP---RIKPRR--WL--VVD--FKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVL 242 (505)
Q Consensus 173 ~~-~~~~~i~~~~---~~~~~~--~~--~~~--~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~ 242 (505)
+. ++++++++.. ..++.+ .. ++. ..+.+....+...+|+|.|+|.+++++||+|||+|++|||++.++++
T Consensus 158 ~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~~i~ 237 (507)
T TIGR00910 158 LIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYPLAMILLMIA 237 (507)
T ss_pred HHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccccHHHHHHHHH
Confidence 32 3333322221 111111 11 110 11112223344568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCcCcccc---HHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCC
Q 010647 243 VVSSYLIPLLAGTGGLTSLSSEWSDG---YFAEVGMLIGG--FWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGM 317 (505)
Q Consensus 243 ~~~~y~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~ 317 (505)
+.++|.+..++....+|+++...++. ++.+......+ ++...++.+..+++.+++.++++.+.||.++++||||.
T Consensus 238 ~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~sR~l~~~ardg~ 317 (507)
T TIGR00910 238 AICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPSRGMFAAAQKGL 317 (507)
T ss_pred HHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 99999998888888888877554333 33333344433 45556677778888999999999999999999999999
Q ss_pred ChhhhhccCCCCCChHHHHHHHHHHHHHHhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcc
Q 010647 318 LPAIFASRSKYGTPTLSILCSATGVIFLSWM----------SFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYK 387 (505)
Q Consensus 318 lP~~~~~~~k~~~P~~ai~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 387 (505)
+|++|+|+||+++|++|++++.+++.++.+. .++.+.++++....+.|++..++.+++|+|+|+.+||||
T Consensus 318 lP~~~~k~nk~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~~~a~i~lr~k~p~~~rpf~ 397 (507)
T TIGR00910 318 LPAAFAKMNKHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGYFVLILKHPDLKRTFN 397 (507)
T ss_pred cCHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeE
Confidence 9999999999999999999999888664311 245566778889999999999999999999999999999
Q ss_pred ccCchhH---HHHHHHHHHHHHHHHHHHh
Q 010647 388 VPLQTFG---VTMLCLLPAVLLVLVMCLA 413 (505)
Q Consensus 388 ~~~~~~~---~~~~~~~~~~~~~~~~~~~ 413 (505)
.|.++.. ...++++..++..+..++|
T Consensus 398 ~pg~~~~~~i~~~~~~~~~~~~~v~~~~P 426 (507)
T TIGR00910 398 IPGGIGGKLIIAGIGFLLSIFAFFISFLP 426 (507)
T ss_pred ecCCccchhhHHHHHHHHHHHHHheeeeC
Confidence 9876533 3333444444444433343
No 30
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=3.6e-47 Score=390.59 Aligned_cols=391 Identities=24% Similarity=0.311 Sum_probs=287.7
Q ss_pred CccchhhHHHHHHHHhccCCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhhhCChh
Q 010647 19 PKLTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFW 98 (505)
Q Consensus 19 r~l~~~~~~~~~~~~i~g~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~ 98 (505)
||++.+++..+.+..+.+ ...++. ... .|+ ..++.|+++++++.++.+++++||++++|++||.|.|+++.+||.+
T Consensus 1 ~~~~~~~l~~~~~~~v~~-~~~~~~-~a~-~G~-~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~~ 76 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVS-LRGLPA-EAE-YGL-SAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGARW 76 (474)
T ss_pred CcccHHHHHHHHHHHHHH-hhcchH-HHH-hhH-HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChhH
Confidence 569999999999877754 223333 344 677 4577888888865679999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhch------hh-hhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-
Q 010647 99 GFQEGFWKWLSGVLDNALYPVLFLDYLKHSLP------IF-NLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVF- 170 (505)
Q Consensus 99 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~- 170 (505)
||..||.+|+.+....+......+..+..+.+ .. .+++....+.++++++.+.+|++|+|..++++.+...+
T Consensus 77 gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~~~~ 156 (474)
T TIGR03813 77 GFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATVDESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGGIVG 156 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 99999999999876655444333333332221 11 12344445666777788999999999999999876544
Q ss_pred HHHHHHHHHHHHhcc---ccCCc----ccccccCCcChhHH--HHHHHHHhcchHhhhhhhccccCcCcchhHHHHHHHH
Q 010647 171 SLCPFVVMGILSIPR---IKPRR----WLVVDFKKVDWRGY--FNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVV 241 (505)
Q Consensus 171 ~i~~~~~~~i~~~~~---~~~~~----~~~~~~~~~~~~~~--~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~ 241 (505)
++++++++++.++.. .+..+ +.+...+..++... ...++|+|.|+|.++.++||+|||+|++|||++.++.
T Consensus 157 ~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~~ 236 (474)
T TIGR03813 157 TIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAASIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAAL 236 (474)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHHHHHHHHhchhHhHHHHHhccCcccchhHHHHHHHH
Confidence 344434333333221 11111 11111111122222 2345789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCcCcccc---HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCC
Q 010647 242 LVVSSYLIPLLAGTGGLTSLSSEWSDG---YFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGML 318 (505)
Q Consensus 242 ~~~~~y~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~l 318 (505)
++.++|++..++....+|+++...+.+ ++.+.....+.++...++.+...++.+++.++++.+.+|++|++||||.+
T Consensus 237 ~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~~a~ardg~l 316 (474)
T TIGR03813 237 GTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAGPSSGMLAVAKAGYL 316 (474)
T ss_pred HHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999998887543332 34445555566667777777788889999999999999999999999999
Q ss_pred hhhhhccCCCCCChHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccc
Q 010647 319 PAIFASRSKYGTPTLSILCSATGVIFLSW---------MSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVP 389 (505)
Q Consensus 319 P~~~~~~~k~~~P~~ai~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 389 (505)
|++|+|+||+++|++|++++.+++.++.. ..++.+.++++....++|++.+++.+++|+|+|+.+||||.|
T Consensus 317 P~~~~kv~k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~~~~~~~rpf~~p 396 (474)
T TIGR03813 317 PTFFQKTNKNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRYSQPDRPRPYRIP 396 (474)
T ss_pred CHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEec
Confidence 99999999999999999999887543321 136778888888999999999999999999988999999998
Q ss_pred CchhH---HHHHHHHHHHHHHHHHHHh
Q 010647 390 LQTFG---VTMLCLLPAVLLVLVMCLA 413 (505)
Q Consensus 390 ~~~~~---~~~~~~~~~~~~~~~~~~~ 413 (505)
.++.. ..+++++..++..+..++|
T Consensus 397 ~g~~g~~~~~~~~~~~~~~~~~~~~~P 423 (474)
T TIGR03813 397 GGLAGMWFIGGLGFVGSALAFVLSFIP 423 (474)
T ss_pred CCccchhHHHHHHHHHHHHHHheeEeC
Confidence 75543 3444444444444444444
No 31
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=7.6e-46 Score=399.50 Aligned_cols=415 Identities=17% Similarity=0.130 Sum_probs=316.6
Q ss_pred cCCCccchhhHHHHH-HHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCchhHhHHh
Q 010647 16 KTSPKLTVLPLIALI-FYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATS-FPENGGYVIWISS 92 (505)
Q Consensus 16 ~~~r~l~~~~~~~~~-~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~-~P~~Gg~y~~~~~ 92 (505)
..+|++|++..+.+- +++|+| ++|.-++.+...+|+...++.|++++++ ++++++||+|+++. +|.+||.|+|++|
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~v-tlltaLS~seiaTng~p~aGG~Y~yisr 151 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCV-TTITGLSMSAIATNGVVKGGGAYYLISR 151 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 456899999999986 999999 6776666665448877778889999985 99999999999998 9999999999999
Q ss_pred hhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhh-----h-hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 010647 93 AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNL-----L-IARIPALLGITGALTYLNYRGLHIVGFSAVS 166 (505)
Q Consensus 93 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~ 166 (505)
.+||.+|+..||.+++++....+.++.++++|+..+++.... + ....+++++++++++++|++|+|+.+|+|.+
T Consensus 152 alGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In~~Gvk~~ak~q~v 231 (953)
T TIGR00930 152 SLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGISFAGMEWENKAQVL 231 (953)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999999999999999999999999988753211 1 1235677788889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccCC-----------ccc----ccccCCc-ChhHHHHHHHHHhcchHhhhhhhccccCcCc
Q 010647 167 LLVFSLCPFVVMGILSIPRIKPR-----------RWL----VVDFKKV-DWRGYFNSMFWNLNYWDKASTLAGEVENPSK 230 (505)
Q Consensus 167 ~~~~~i~~~~~~~i~~~~~~~~~-----------~~~----~~~~~~~-~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~~ 230 (505)
++.++++.++.+++.++...... .+. +...... ++...+...+++|.|+|+.++++||+|||+|
T Consensus 232 l~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKnP~r 311 (953)
T TIGR00930 232 FLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDPQK 311 (953)
T ss_pred HHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccChhh
Confidence 99998888777766554321100 010 0000001 1333444456799999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCccccH------------------HH-----HHHHHhcchHHHHHHH
Q 010647 231 TFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGY------------------FA-----EVGMLIGGFWLKWWIQ 287 (505)
Q Consensus 231 ~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~------------------~~-----~~~~~~~~~~~~~~~~ 287 (505)
++|||++.++++++++|++..++...+.+.+......+. .. .............++.
T Consensus 312 ~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~~~~~~~~~~~lI~ 391 (953)
T TIGR00930 312 AIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMSLVSPFPPLIT 391 (953)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchHHHHhhhhhhHHHHH
Confidence 999999999999999999999888877765432211110 00 0111111223457788
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCh--hhhhccC-CCCCChHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHH
Q 010647 288 AASAMSNLGLFEAEMSGDAFQLLGMSEMGMLP--AIFASRS-KYGTPTLSILCSATGVIFLS-WMSFQEILEFLNFLYAI 363 (505)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP--~~~~~~~-k~~~P~~ai~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 363 (505)
++++++.+++.++++.+++|++++|||||.+| ++|+|+| |+++|++|+++++++++++. ..+++.+..+.+..+++
T Consensus 392 ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~l~~ia~lis~~fLl 471 (953)
T TIGR00930 392 AGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAELNTIAPIISNFFLA 471 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999 8999999 88999999999999988776 44689999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCCC-ccccCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010647 364 GMLLEFAAFIKLRIKKPDLHRP-YKVPLQTFGVTMLCLLPAVLLVLVMCLASLRTFIVSGGVIIVGFLLYPVLVHAK 439 (505)
Q Consensus 364 ~~~~~~~~~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 439 (505)
+|+++++++++.|.+++...|| ||. .++ ++++++.+.++..++..++...+ +.+++++.+|+...+++
T Consensus 472 ~Y~lvnla~~~l~~~~~p~~RP~fk~-~~~----~~sllG~l~c~~lmf~i~w~~al---i~~~i~~~ly~~~~~~~ 540 (953)
T TIGR00930 472 SYALINFSCFHASLLRSPGWRPRFKY-YHW----WLSLLGASLCCAIMFLISWWAAL---VAMVIALFLYKYVTYKK 540 (953)
T ss_pred HHHHHHHHHHHHhhccCCCCCCcccc-chH----HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhccC
Confidence 9999999999888665433444 443 222 45666677777777666654333 33444555555554443
No 32
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-46 Score=378.86 Aligned_cols=378 Identities=18% Similarity=0.212 Sum_probs=304.2
Q ss_pred ccCCCccchhhHHHHHHHHhcc-CCc-CchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCchhHhHH
Q 010647 15 AKTSPKLTVLPLIALIFYEVSG-GPF-GVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPE-NGGYVIWIS 91 (505)
Q Consensus 15 ~~~~r~l~~~~~~~~~~~~i~g-~~~-~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~-~Gg~y~~~~ 91 (505)
+++||+|+.+++.++++|.++| |.+ +.+..+.+ +||...+++++++++. +++.+.|++|++.++|. +||.|.|++
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~-~gp~s~iisf~i~g~~-~~~~~~~~~E~~~~~P~~aGs~~~ya~ 103 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRN-GGPPSLLISFIIAGIA-ALLSALCLGEFAVRFPVSAGSFYTYAY 103 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhc-cCChhHHHHHHHHHHH-HHHHHHHHHHHheecccccccceeeee
Confidence 5899999999999999999999 666 45556666 7777889999999985 99999999999999999 599999999
Q ss_pred hhhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhc---------hhhhhhhhHHHHHHHHHHHHHHHHH------hh
Q 010647 92 SAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSL---------PIFNLLIARIPALLGITGALTYLNY------RG 156 (505)
Q Consensus 92 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~~------~g 156 (505)
|.+|+.+||.+||.|++.|+...++.+.+.+.+++++. +..+ ...+...++.+...+|+ .+
T Consensus 104 ~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~----~~~~~~~fla~~v~in~~gv~~~ge 179 (554)
T KOG1286|consen 104 RFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVN----PGGWIPDFLAFILIINLFGVLAYGE 179 (554)
T ss_pred eeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCC----CCccHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999986 2221 11122223333334444 45
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccc-------cccCCcChh---HHHHHHHHHhcchHhhhhhhcccc
Q 010647 157 LHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLV-------VDFKKVDWR---GYFNSMFWNLNYWDKASTLAGEVE 226 (505)
Q Consensus 157 ~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~-------~~~~~~~~~---~~~~~~~~a~~G~e~~~~~~~E~k 226 (505)
++.....+.+++.+.++.+.+++.++....+..++.. ..+.+.++. ..+..++|+|.|+|.++..+||+|
T Consensus 180 ~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~k 259 (554)
T KOG1286|consen 180 VEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAK 259 (554)
T ss_pred eeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 5556666777777777666666666666655545442 112233343 344567899999999999999999
Q ss_pred CcCcchhHHHHHHHHHHHHHHHHHHHHHhhccCCCC--cCcc---ccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Q 010647 227 NPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLS--SEWS---DGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAE 301 (505)
Q Consensus 227 ~p~~~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (505)
||+|++|+|+..++.++.++|++..+.+...+|+++ +... .+|+....+..+-+....++++++++++.++.|+.
T Consensus 260 NP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~ 339 (554)
T KOG1286|consen 260 NPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSS 339 (554)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988 4433 24666555565666666799999999999999999
Q ss_pred hhhhhHHHHHHHhcCCChhhhhccCCCCCChHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010647 302 MSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWM-------SFQEILEFLNFLYAIGMLLEFAAFIK 374 (505)
Q Consensus 302 ~~~~sR~l~a~a~dg~lP~~~~~~~k~~~P~~ai~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~ 374 (505)
+++.+|.+++||+||.+|++|+++||+|+|++|+++..+++.+..+. .|+.+.++.+++.++.|.++++++++
T Consensus 340 ~y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl~~w~~i~~~~i~ 419 (554)
T KOG1286|consen 340 LYAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTLFAWTLVALSHLR 419 (554)
T ss_pred hHHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHHHHHHHHHHHHee
Confidence 99999999999999999999999997799999999999998877633 36999999999999999999999999
Q ss_pred HHhhC-----CCCCCCccccCchhHHHHH
Q 010647 375 LRIKK-----PDLHRPYKVPLQTFGVTML 398 (505)
Q Consensus 375 ~r~~~-----~~~~~~~~~~~~~~~~~~~ 398 (505)
+|+.. ...+.+|+.+..++...+.
T Consensus 420 ~R~a~~~q~~~~~~~~~~s~~~~~gs~~~ 448 (554)
T KOG1286|consen 420 FRYAMKVQGRSLDELPYKSPTGPYGSYYG 448 (554)
T ss_pred eeecccccCCCcccccccCCCCCchhHHH
Confidence 98764 2234567776555444443
No 33
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-44 Score=370.21 Aligned_cols=392 Identities=25% Similarity=0.378 Sum_probs=323.6
Q ss_pred ccccCCCccchhh-HHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhH
Q 010647 13 KAAKTSPKLTVLP-LIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWI 90 (505)
Q Consensus 13 ~~~~~~r~l~~~~-~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~ 90 (505)
.+++++|+++.++ ...+..+.++| +++..+..... .++. ..++|++++++ ..+.+++++|+++++|++||.|.|+
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~-~~~~-~~~~~li~~~~-~~~~a~~~~el~~~~p~~GG~y~~~ 82 (466)
T COG0531 6 MSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAG-LAPA-AILAWLIAGII-ILFLALSYAELSSAIPSAGGAYAYA 82 (466)
T ss_pred cchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHH-hchH-HHHHHHHHHHH-HHHHHHHHHHHHhcCCCCCCeeeeh
Confidence 3567889999999 88889988888 67777666655 3343 34558888885 6666999999999999999999999
Q ss_pred HhhhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchh---hhhh-hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 010647 91 SSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPI---FNLL-IARIPALLGITGALTYLNYRGLHIVGFSAVS 166 (505)
Q Consensus 91 ~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~ 166 (505)
++.+||+.||.++|.+++++....+......++++...++. ...+ +...+++.++.++.+++|++|+|..++++.+
T Consensus 83 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~ 162 (466)
T COG0531 83 KRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLNLRGIKASAKINSI 162 (466)
T ss_pred hhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999888874 2222 6778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccCCcccccc-c--CCcChh---HHHHHHHHHhcchHhhhhhhccccCcCcchhHHHHHHH
Q 010647 167 LLVFSLCPFVVMGILSIPRIKPRRWLVVD-F--KKVDWR---GYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAV 240 (505)
Q Consensus 167 ~~~~~i~~~~~~~i~~~~~~~~~~~~~~~-~--~~~~~~---~~~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~ 240 (505)
...++++.++++++.++.+.+.+...... . ....+. ..+...+|+|.|+|.+++++||+|||+|++||+++.+.
T Consensus 163 ~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~~ 242 (466)
T COG0531 163 ITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSL 242 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHHHH
Confidence 99999999998888877665544322111 1 111122 22344689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcCc-cc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCC
Q 010647 241 VLVVSSYLIPLLAGTGGLTSLSSEW-SD-GYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGML 318 (505)
Q Consensus 241 ~~~~~~y~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~l 318 (505)
+.+.++|++...+.....|.++... .. .|..+......+.+...++.+..+++.+++.+++..+.+|.+|+|+|||.+
T Consensus 243 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~l 322 (466)
T COG0531 243 LIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLL 322 (466)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999998754221 22 688888888888888899999999999999999999999999999999999
Q ss_pred hhhhhccC-CCCCChHHHHHHHHHHH-HHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccCc
Q 010647 319 PAIFASRS-KYGTPTLSILCSATGVI-FLSWM-----SFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVPLQ 391 (505)
Q Consensus 319 P~~~~~~~-k~~~P~~ai~~~~~~~~-~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 391 (505)
|++++|+| |+++|++++++..+++. +.... .++.+.++.+....+.|++..++..++|+|+++.+|++|.+..
T Consensus 323 P~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (466)
T COG0531 323 PKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDLKRPFRLPLA 402 (466)
T ss_pred cHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccc
Confidence 99999999 67899999999999998 33322 3689999999999999999999999999998888888888765
Q ss_pred hhHHHHHHHHHHHHHHH
Q 010647 392 TFGVTMLCLLPAVLLVL 408 (505)
Q Consensus 392 ~~~~~~~~~~~~~~~~~ 408 (505)
.. ....+.+...++..
T Consensus 403 ~~-~~~~~~~~~~~~~~ 418 (466)
T COG0531 403 PL-IPILGIVAVLLLLY 418 (466)
T ss_pred ch-HHHHHHHHHHHHHH
Confidence 53 22333444444444
No 34
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=100.00 E-value=3.4e-43 Score=362.62 Aligned_cols=370 Identities=17% Similarity=0.174 Sum_probs=264.7
Q ss_pred cCCCccchhhHHHHHHHHhccCCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCchhHhHHhhh
Q 010647 16 KTSPKLTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPE-NGGYVIWISSAF 94 (505)
Q Consensus 16 ~~~r~l~~~~~~~~~~~~i~g~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~-~Gg~y~~~~~~~ 94 (505)
+++||++++++..+++++++|. -..+..... +||.. ++.|+++++++.++.+++++||++++|+ +||.|+|+++.+
T Consensus 4 ~~~~~l~~~~l~~~~~~~vig~-~~~~~~~~~-~G~~~-i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~ 80 (496)
T PRK15238 4 NTKKKLSLIGLILMIFTSVFGF-ANSPRAFYL-MGYSA-IPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSV 80 (496)
T ss_pred cccCeeeHHHHHHHHHHHHHhC-CchHHHHHH-cChHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHc
Confidence 3578999999999999999883 234555666 78865 4556666665578999999999999997 899999999999
Q ss_pred CChhHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHhchh--------h--hhhhhHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 010647 95 GPFWGFQEGFWKWLSGVLDNALYPVLFLD-YLKHSLPI--------F--NLLIARIPALLGITGALTYLNYRGLHIVGFS 163 (505)
Q Consensus 95 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 163 (505)
||++||+++|.++..+....+........ .....+.. . ..+.....++++.+++++.+|++|+|..+++
T Consensus 81 G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~~~~~~i 160 (496)
T PRK15238 81 GPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFLGLNSTQVVGILAVIWMILVTFVASKGINKIAKV 160 (496)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 99999999999888777654333221111 11111110 0 1111223455556668899999999999999
Q ss_pred HHHHHHHHHHHHHH-H---HHHHhccc-cC---Ccccccc--cCC-----cChhHHHHHHHHHhcchHhhhhhhccccCc
Q 010647 164 AVSLLVFSLCPFVV-M---GILSIPRI-KP---RRWLVVD--FKK-----VDWRGYFNSMFWNLNYWDKASTLAGEVENP 228 (505)
Q Consensus 164 ~~~~~~~~i~~~~~-~---~i~~~~~~-~~---~~~~~~~--~~~-----~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p 228 (505)
+++.+.+++...++ + .+..+... +. .++.++. .++ .++...+....|+|.|+|.+++++||+|||
T Consensus 161 ~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p 240 (496)
T PRK15238 161 TSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKTENP 240 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhccCC
Confidence 99877666543221 1 11111111 11 1111110 011 112223345679999999999999999999
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCcc------ccHHHHHHHH-----------------hcchHHHHH
Q 010647 229 SKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWS------DGYFAEVGML-----------------IGGFWLKWW 285 (505)
Q Consensus 229 ~~~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-----------------~~~~~~~~~ 285 (505)
+|++|||++.+..+++++|++..+......|+++...+ ..|.. ..+. ..+.+...+
T Consensus 241 ~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~g~~~~~~~~~g~~~~~~ 319 (496)
T PRK15238 241 EKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYV-LMNNLGYTLGHALGLSPAASLTLGVWFARI 319 (496)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHH-HHHHHHHHHHHHhccchhhhhhhhHHHHHH
Confidence 99999999999999999999998888777776653321 12221 1111 123344446
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhccCCCCCChHHHHHHHHHHHHHH-hh--h-------HHHHHH
Q 010647 286 IQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLS-WM--S-------FQEILE 355 (505)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~k~~~P~~ai~~~~~~~~~~~-~~--~-------~~~l~~ 355 (505)
+.+..+++.+++.+....+.+|.++..+|||.+|++|+|+||+|+|++|++++.++..++. .. . |+.+.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~nk~g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~ 399 (496)
T PRK15238 320 TGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLNKNGMPANAMWLQCIIVSVFILLVSFGGDAASAFFNILTL 399 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 6777888899999999999999999999999999999999999999999999988776553 21 1 678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccC
Q 010647 356 FLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVPL 390 (505)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 390 (505)
+++....+.|++++++++++|| +++.+|||+.+.
T Consensus 400 l~~~~~li~y~~~~~a~i~~r~-~~~~~r~~~~~~ 433 (496)
T PRK15238 400 MANVSMTLPYLFLAGAFPFFKK-KKDIDRPFVVFK 433 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-ccCCCCCceecC
Confidence 9999999999999999999876 567788887743
No 35
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=100.00 E-value=2.7e-44 Score=366.13 Aligned_cols=359 Identities=30% Similarity=0.485 Sum_probs=301.6
Q ss_pred cchhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhhhCChhH
Q 010647 21 LTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWG 99 (505)
Q Consensus 21 l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g 99 (505)
+|+|+.++++++.+.| +++..+ .... +|+. .+++|++++++..++.+++|+|+++++|++||.|.|+++.+||++|
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~-~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g 77 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAAS-AGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWG 77 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTC-TGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHH-HhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccch
Confidence 5889999999999998 455555 4455 7875 6778888887644899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhch-hhh-hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHH
Q 010647 100 FQEGFWKWLSGVLDNALYPVLFLDYLKHSLP-IFN-LLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL-CPFV 176 (505)
Q Consensus 100 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i-~~~~ 176 (505)
|+.+|.+++.+....+.....+++++...+. +.. ++++..++++++++..+.+|++|.|..+|++.+...+++ ..++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~l~ 157 (426)
T PF13520_consen 78 FIVGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVIPLL 157 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccceeEEEeeccccccccchhhhhhhccccccccccchheeeeecccccceEeeechhhhhhhhhhhhhhhhhhhhhh
Confidence 9999999999999999999999999988763 332 356778888899999999999999999999999999999 5766
Q ss_pred HHHHHHhccccCCcccc-----cccCCcChhH---HHHHHHHHhcchHhhhhhhccccCcCcchhHHHHHHHHHHHHHHH
Q 010647 177 VMGILSIPRIKPRRWLV-----VDFKKVDWRG---YFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYL 248 (505)
Q Consensus 177 ~~~i~~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~~~~y~ 248 (505)
++++.++...+.+.... ....+.++.+ .+...+|+|.|+|++++++||.|| |++||+++.+.+++.++|+
T Consensus 158 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ip~ai~~~~~~~~i~y~ 235 (426)
T PF13520_consen 158 VLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN--KTIPRAIIISIIIVAIIYI 235 (426)
T ss_dssp HHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS--HHHHHHHHHHHHHHHHHHH
T ss_pred hheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc--hhheeecccchhHHHHHHh
Confidence 66666666544333220 1112223333 334567999999999999999776 8999999999999999999
Q ss_pred HHHHHHhhccCCCCcCcc---ccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhcc
Q 010647 249 IPLLAGTGGLTSLSSEWS---DGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASR 325 (505)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~ 325 (505)
+..++.....|+++.... .++...+.++.++++...++.+...++.+++.++.+.+.+|++++|+|||.+|++|+|+
T Consensus 236 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~ 315 (426)
T PF13520_consen 236 LFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLPKWFAKV 315 (426)
T ss_dssp HHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSGGGGTT
T ss_pred hhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhcccccccccchhhhhhhc
Confidence 999999999998875433 23688888888888999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHH-h------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 010647 326 SKYGTPTLSILCSATGVIFLS-W------MSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHR 384 (505)
Q Consensus 326 ~k~~~P~~ai~~~~~~~~~~~-~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 384 (505)
||+|+|++|+++..+++.++. . ..++.+.+..++...+.|++..++.+++|+|+++.+|
T Consensus 316 ~k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 381 (426)
T PF13520_consen 316 NKFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILAVLFLRRKRPDLKR 381 (426)
T ss_dssp SSSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHSCSSGH
T ss_pred cccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCC
Confidence 999999999999999986553 1 1578899999999999999999999999999887765
No 36
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=5.6e-45 Score=375.27 Aligned_cols=365 Identities=25% Similarity=0.352 Sum_probs=291.7
Q ss_pred HHHHHHHhcc-CCc-CchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhhhCChhHHHHHH
Q 010647 27 IALIFYEVSG-GPF-GVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGF 104 (505)
Q Consensus 27 ~~~~~~~i~g-~~~-~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~ 104 (505)
.++++++++| |.+ +.+..+.. +||...++++++++++ .++.+.+++|+++++|++||.|.|++|.+||.+|+.+||
T Consensus 3 ~~~~ig~~ig~g~f~~~g~~~~~-~G~~~~~la~li~~i~-~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw 80 (478)
T PF00324_consen 3 FMISIGGIIGTGLFLGSGFAIAA-AGPGGAPLAYLIAGII-VLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGW 80 (478)
T ss_pred EEeeHHHHHHHHHHHHHHHHHHh-cccccchhHhHHHHHH-HHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeH
Confidence 3456777777 444 55566666 8886678999999995 888999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHh--chhhhhhhhH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010647 105 WKWLSGVLDNALYPVLFLDYLKHS--LPIFNLLIAR-IPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGIL 181 (505)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~ 181 (505)
.||+.+....+......+.+++.+ .++....+.+ .++..++.++.+.+|++|+|..++++.++..++++.++.+++.
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~li~~ii~ 160 (478)
T PF00324_consen 81 AYWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTWVWGILIAIIFILLITLLNLFGVRVSGKIEFILTIIKLIALIAFIIV 160 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhhccccccccccccccccchhhhhhhhhhhhhhhhhhhccchHHHHHHHHhhhHhhhhhhh
Confidence 999999999999999888888877 4433211211 1346777888899999999999999999999999888877776
Q ss_pred H-hc-c--ccCCcc---c-cc----cc-------CCcChhHHH---HHHHHHhcchHhhhhhhccccCcCcchhHHHHHH
Q 010647 182 S-IP-R--IKPRRW---L-VV----DF-------KKVDWRGYF---NSMFWNLNYWDKASTLAGEVENPSKTFPKALLGA 239 (505)
Q Consensus 182 ~-~~-~--~~~~~~---~-~~----~~-------~~~~~~~~~---~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~ 239 (505)
+ +. . .++.+. . +. .. +..++.+++ ...+++|.|+|+++.++||+|||+|++|||+..+
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~~~ 240 (478)
T PF00324_consen 161 GVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATLLS 240 (478)
T ss_pred cccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhhhhhHhhhh
Confidence 6 21 1 111111 0 00 00 011244444 3457899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCcCccc-----cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHh
Q 010647 240 VVLVVSSYLIPLLAGTGGLTSLSSEWSD-----GYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSE 314 (505)
Q Consensus 240 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~ 314 (505)
+++++++|++..++.....|+++..... +|+.+..+..+++....++.+..+.+.+++.++.++++||++++|||
T Consensus 241 ~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l~ama~ 320 (478)
T PF00324_consen 241 VLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANASLYAASRLLYAMAR 320 (478)
T ss_pred hhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhhhcccceeehhhhh
Confidence 9999999999999999999988733222 58999999999999999999999999999999999999999999999
Q ss_pred cCCChhhhhccC-CCCCChHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC---
Q 010647 315 MGMLPAIFASRS-KYGTPTLSILCSATGVIFLSWM-------SFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLH--- 383 (505)
Q Consensus 315 dg~lP~~~~~~~-k~~~P~~ai~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--- 383 (505)
||.+|+++.+.| |+|+|++|++++.+++++..+. .++.+.+..++..++.|.+.+++.+++|++.+..+
T Consensus 321 dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~r~~~~~~~~~~ 400 (478)
T PF00324_consen 321 DGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVYILINISYIRFRKKFKYRGRSI 400 (478)
T ss_pred hhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHHHhhhhhhhhhhhhhccccccc
Confidence 999995555555 9999999999999988776632 35667788888999999999999998888743322
Q ss_pred --CCccccCchh
Q 010647 384 --RPYKVPLQTF 393 (505)
Q Consensus 384 --~~~~~~~~~~ 393 (505)
.+++.+..+.
T Consensus 401 ~~~~~~~~~~~~ 412 (478)
T PF00324_consen 401 SELPFKSPFGPM 412 (478)
T ss_pred cccChhhhhhHH
Confidence 3567665553
No 37
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.97 E-value=2.8e-28 Score=244.21 Aligned_cols=354 Identities=13% Similarity=0.040 Sum_probs=256.8
Q ss_pred HHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhhhCChhHHHHHHHH
Q 010647 28 ALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWK 106 (505)
Q Consensus 28 ~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~ 106 (505)
++.+++++| |++.+|..+.. .|....++..++++++ +...+++++|+++++|++||.|.|+++.+||..+++.+|.+
T Consensus 4 ~lv~gt~IGaGIl~lP~~~a~-~g~~~~~~~~i~~~~~-~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~ 81 (381)
T TIGR00837 4 LIIAGTTIGAGMLALPTSTAG-AWFIWTLLLLILLWFL-MLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSL 81 (381)
T ss_pred EEeehhhHhHHHHHHHHHHHh-hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHH
Confidence 356778888 78999988876 4432334455666664 78899999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhchhh-hhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010647 107 WLSGVLDNALYPVLFLDYLKHSLPIF-NLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPR 185 (505)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~ 185 (505)
++.+.....++....++++..+++.. ..+++.....+++.+++..+|++|.|..+|++.+++..++..++++++.++.+
T Consensus 82 ~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~ 161 (381)
T TIGR00837 82 LFVLYILTYAYISGGGSILSRLIGEYFGFPWSARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIAFALVFSGLLPH 161 (381)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99988888888888888888877642 22345556667778888899999999999999999999998888887777777
Q ss_pred ccCCcccccccCCcChhH---HHHHHHHHhcchH-hhhhhhccccCcCcchhHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 010647 186 IKPRRWLVVDFKKVDWRG---YFNSMFWNLNYWD-KASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSL 261 (505)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~---~~~~~~~a~~G~e-~~~~~~~E~k~p~~~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 261 (505)
.+.+++.+...++.++.. .++..+++| |+| ..+...+|.+|++|++||+++.+..+..++|++........+|.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~ 240 (381)
T TIGR00837 162 VKGDLLLDVALDTSYWPYILSALPVCLTSF-GFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGNLPRS 240 (381)
T ss_pred ccHHHHhcCccccccHHHHHHHHHHHHHHH-HcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 666655443221223433 334456677 564 688889999877999999999999999999999999999999988
Q ss_pred CcC------ccccHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhccCCCCCChHH
Q 010647 262 SSE------WSDGYFAEVGMLI-GGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLS 334 (505)
Q Consensus 262 ~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~k~~~P~~a 334 (505)
+.. .+.+++.+..+.. ++++...++.++..+++.++.+++..+.+ |+ +++.+++.|+++.|..+
T Consensus 241 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~--------d~-l~~~~~~~~~~~~~~~~ 311 (381)
T TIGR00837 241 EFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLF--------DY-LADLFKFDDSKKGRFKT 311 (381)
T ss_pred HHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH-HHHHhCCCcccCCCchh
Confidence 743 1224556666654 55567778888888888888888777666 33 55556655532336777
Q ss_pred HHHHHHHHHHHHh-hhHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhCCCCCCCccccCchhHH
Q 010647 335 ILCSATGVIFLSW-MSFQEILEFLNFLYA---IGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGV 395 (505)
Q Consensus 335 i~~~~~~~~~~~~-~~~~~l~~~~~~~~~---~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 395 (505)
.++..+..+++.. .....+..+...+.. +...++.+..++.|||++ +.+||.|.++...
T Consensus 312 ~~~~~~~pl~~a~~~p~~~~~~l~~~G~~~~~~~~~~p~l~~~~~r~~~~--~~~~~~~~~~~~~ 374 (381)
T TIGR00837 312 GLLTFLPPLVFALFYPEGFLYAIGYAGLAATIWAVIIPALLAWKARKKFP--NAGYRVWGGNKLL 374 (381)
T ss_pred hhhhHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCccccCChHHH
Confidence 7777777766652 222233344434333 334444444444455443 3589999988543
No 38
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=99.93 E-value=3e-24 Score=212.76 Aligned_cols=417 Identities=17% Similarity=0.191 Sum_probs=287.4
Q ss_pred CCccchhhHHHH-HHHHhccCCcCc-hhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCchhHhHHhhh
Q 010647 18 SPKLTVLPLIAL-IFYEVSGGPFGV-EDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPE-NGGYVIWISSAF 94 (505)
Q Consensus 18 ~r~l~~~~~~~~-~~~~i~g~~~~~-~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~-~Gg~y~~~~~~~ 94 (505)
+-++|.+-.+.+ ++-++.|-++.+ ...+...+|....++..++.+.+ +++++.+++.+++.--. +||.|...+|.+
T Consensus 111 a~~mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~c-TmLTaISmSAIATNGVVpaGGsYfmISRsL 189 (1075)
T KOG2082|consen 111 AARMGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLC-TMLTAISMSAIATNGVVPAGGSYFMISRSL 189 (1075)
T ss_pred ccccceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCcccCCCeeEEEeccc
Confidence 345554443333 665665532221 12222225554444444445554 88889999999886555 699999999999
Q ss_pred CChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-hchhhh---------h----hhhHHHHHHHHHHHHHHHHHhhhHHH
Q 010647 95 GPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKH-SLPIFN---------L----LIARIPALLGITGALTYLNYRGLHIV 160 (505)
Q Consensus 95 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------~----~~~~~~~~~~~~~~~~~i~~~g~~~~ 160 (505)
||..|-.+|.+..++.....+.+..+..+.+.. .+|... + .-...+-+.+++++.+++...|+|..
T Consensus 190 GPEFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~V 269 (1075)
T KOG2082|consen 190 GPEFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKFV 269 (1075)
T ss_pred CccccceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998887765 455321 0 01112455677888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-cC-----------------------------Cc-------------ccc----
Q 010647 161 GFSAVSLLVFSLCPFVVMGILSIPRI-KP-----------------------------RR-------------WLV---- 193 (505)
Q Consensus 161 ~~~~~~~~~~~i~~~~~~~i~~~~~~-~~-----------------------------~~-------------~~~---- 193 (505)
.++..++....++.++.+.+.++.+. ++ .+ ..+
T Consensus 270 nk~A~vfL~CVILSIlaiyaG~i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC~~~~~~~~c~ 349 (1075)
T KOG2082|consen 270 NKFAPVFLACVILSILAIYAGGIKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFCNSNNDSATCD 349 (1075)
T ss_pred HHhhHHHHHHHHHHHHHHHHhhhhhccCCCCCeeEEecceeccccccccchhhhccccccHHHHHHHhhCCCCCCCcccc
Confidence 99999998888877776665544221 00 00 000
Q ss_pred --ccc-------CCc---------C-hhH-----------------------------------HHHHHHH-HhcchHhh
Q 010647 194 --VDF-------KKV---------D-WRG-----------------------------------YFNSMFW-NLNYWDKA 218 (505)
Q Consensus 194 --~~~-------~~~---------~-~~~-----------------------------------~~~~~~~-a~~G~e~~ 218 (505)
+.. +-. + |.. .+.+++| +.+|.-+.
T Consensus 350 ~y~~~nnvt~i~GipG~a~g~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFPsVTGImaG 429 (1075)
T KOG2082|consen 350 EYFSKNNVTEIQGIPGLASGVFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFPSVTGIMAG 429 (1075)
T ss_pred cccccccceeecCCcchhhhhhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhccccceeeec
Confidence 000 000 0 000 1112222 67799999
Q ss_pred hhhhccccCcCcchhHHHHHHHHHHHHHHHHHHHHHhhccCC----CCcCccccHHHHHHHHhcchHHHHHHHHHHHHHH
Q 010647 219 STLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTS----LSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSN 294 (505)
Q Consensus 219 ~~~~~E~k~p~~~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (505)
++.+++.|||+|.+|.+.+.+.++...+|+...+....++.. |....+ .-..+.......+..+++.+...+|.
T Consensus 430 SNrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~s--v~g~lVva~laWPsPwVi~IGsFlST 507 (1075)
T KOG2082|consen 430 SNRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQS--VGGNLVVATLAWPSPWVIVIGSFLST 507 (1075)
T ss_pred CCCCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhh--ccCcEEEEEecCCCceeeehhHHHHH
Confidence 999999999999999999999999999999998888887762 221110 00011101111234577888999999
Q ss_pred HHHHHHHhhhhhHHHHHHHhcCCCh--hhhhccCCCCCChHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHH
Q 010647 295 LGLFEAEMSGDAFQLLGMSEMGMLP--AIFASRSKYGTPTLSILCSATGVIFLS-WMSFQEILEFLNFLYAIGMLLEFAA 371 (505)
Q Consensus 295 ~~~~~~~~~~~sR~l~a~a~dg~lP--~~~~~~~k~~~P~~ai~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ 371 (505)
+++.+.++.+++|+|++.|||+.+| ..|+|.++++-|.+|+++..+++-+.. ..+.+.+..+.++.++++|..++++
T Consensus 508 ~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~~ngEPt~aLlLT~~Ice~gILigslD~iApilsmFFLMCY~fVNLa 587 (1075)
T KOG2082|consen 508 CGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGKANGEPTWALLLTAIICECGILIGSLDLIAPILSMFFLMCYLFVNLA 587 (1075)
T ss_pred hHHHHhhhcCcHHHHHHHhhcCccchhhhhccccCCCCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999 899999999999999999988886655 4578999999999999999999988
Q ss_pred HHHHH-hhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCC
Q 010647 372 FIKLR-IKKPDLHRPYKVPLQTFGVTMLCLLPAVLLVLVMCLASLRTFIVSGGVIIVGFLLYPVLVHAK-DRKWTQ 445 (505)
Q Consensus 372 ~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~ 445 (505)
+.... .|.|++++.||- ..+.+++++...|+..++..+|...++ .+.+..++|...-++. +|.|.+
T Consensus 588 CavqtLLrtPnWRPRfky-----yHW~LSflG~sLC~~iMF~~SWyyAlv---Am~~a~~IYKYiEykGAeKEWGD 655 (1075)
T KOG2082|consen 588 CAVQTLLRTPNWRPRFKY-----YHWSLSFLGASLCLAIMFISSWYYALV---AMLIAGVIYKYIEYKGAEKEWGD 655 (1075)
T ss_pred HHHHHHhcCCCCCccchh-----hhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhccccchhcc
Confidence 76554 455666555553 333567788888888888877655544 3555556675554443 334543
No 39
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.89 E-value=2.7e-20 Score=184.98 Aligned_cols=282 Identities=17% Similarity=0.113 Sum_probs=218.3
Q ss_pred CccchhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhhhCCh
Q 010647 19 PKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPF 97 (505)
Q Consensus 19 r~l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~ 97 (505)
+|+|.++.+++.+++++| |++..|..+.+.+|+. .+++++++++. .++.+++++|+++++|+. +.+.|.++.+||.
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~-~wi~~ll~~~~-~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~ 77 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQD-GWISIILGGLI-IIFLLCLMIKIMSKFPEK-NFSEILSKYLGKI 77 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCC-eeHHHHHHHHH-HHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHH
Confidence 478999999999999999 6888888776646654 46788888884 888999999999999987 6999999999999
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-H
Q 010647 98 WGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPF-V 176 (505)
Q Consensus 98 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~-~ 176 (505)
.|++.+|.++.......+......+++++..+. +..+.+.+.+++++++...+..|.+..+|++.++..+.+... +
T Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~~~~~ 154 (359)
T TIGR00912 78 LGRLLSILFILYFFLIAAYLIRIFADFIKTYLL---PRTPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLILFIL 154 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988777777777777887765431 134556677788888899999999999999999988877663 4
Q ss_pred HHHHHHhccccCCcccccccCCcChhHHH----HHHHHHhcchHhhhhhhccccCcCcchhHHHHHHHHHHHHHHHHHHH
Q 010647 177 VMGILSIPRIKPRRWLVVDFKKVDWRGYF----NSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLL 252 (505)
Q Consensus 177 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~~~~y~~~~~ 252 (505)
++........+.++..|.. +.++...+ +...|+|.|+|......+|.||| |+.||++..+..+++++|++...
T Consensus 155 il~~~~~~~~~~~~l~P~~--~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~-~~~~k~~~~~~~~~~~ly~~~~~ 231 (359)
T TIGR00912 155 VLILLAPKLGNIKNLLPVL--ENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK-KKIKKSIIKAIIIGVLLYILTTF 231 (359)
T ss_pred HHHHHhcccccHHHccCcc--ccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh-hhhHHHHHHHHHHHHHHHHHHHH
Confidence 4443343434455554432 22444333 24568999999999999999996 56999999999999999999999
Q ss_pred HHhhccCCCCcCccccHHHHHHHHhcch----HHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 010647 253 AGTGGLTSLSSEWSDGYFAEVGMLIGGF----WLKWWIQAASAMSNLGLFEAEMSGDAFQL 309 (505)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 309 (505)
+.....+.++.+....|..++.+....+ ....++...-..+.+.....+++..++.+
T Consensus 232 ~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~ 292 (359)
T TIGR00912 232 VSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGL 292 (359)
T ss_pred HHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888888999988887654 23344444444556666666666666654
No 40
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.89 E-value=1e-21 Score=193.51 Aligned_cols=384 Identities=17% Similarity=0.155 Sum_probs=263.1
Q ss_pred ccchhhHHHHHH-HHhccC--CcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCchhHhHHhhhC
Q 010647 20 KLTVLPLIALIF-YEVSGG--PFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPE-NGGYVIWISSAFG 95 (505)
Q Consensus 20 ~l~~~~~~~~~~-~~i~g~--~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~-~Gg~y~~~~~~~g 95 (505)
|+++++.++.=. =+|... ..-.+..+.+ +|-.-.++-++++=. +.+.+.++...+++.--. .||.|+.++|.+|
T Consensus 66 kLgTf~GvfvPtaLsmfSiLlFLR~gfIvG~-aGll~Tll~lliaY~-I~llTvlSicAIsTNGaV~GGGaYymISRsLG 143 (945)
T KOG1288|consen 66 KLGTFEGVFVPTALSMFSILLFLRFGFIVGQ-AGLLKTLLMLLIAYA-ILLLTVLSICAISTNGAVRGGGAYYMISRSLG 143 (945)
T ss_pred cccceeeEechhHHHHHHHHHHHHHhhhhcc-hHHHHHHHHHHHHHH-HHHHHHHHHhhhccCCceecCceEEEEEcccC
Confidence 787776654411 122110 0123334444 565443333333333 355677777777776555 6889999999999
Q ss_pred ChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchh----------h-hhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 010647 96 PFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPI----------F-NLLIARIPALLGITGALTYLNYRGLHIVGFSA 164 (505)
Q Consensus 96 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 164 (505)
|..|--.|...++++++.++.++.++.+-+.+-+.. + ...|++++-+.+++.++..+++.|-..++|..
T Consensus 144 pEfGGSIGllFf~anV~~~am~isG~vE~il~nfG~~a~g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGsalfAkas 223 (945)
T KOG1288|consen 144 PEFGGSIGLLFFVANVFNCAMNISGFVEPILDNFGKEAQGASGSQFLPDGYWWRFLYTTLVLALCLIVCLLGSALFAKAS 223 (945)
T ss_pred cccCCeeeehhhHHHHhcchhhhhhhhHHHHHhcCccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHhhHHHHHhhh
Confidence 999999999999999999999999999988776631 1 14578888888899999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCc----------cccc---ccCCcChh-----------------------HHHHHH
Q 010647 165 VSLLVFSLCPFVVMGILSIPRIKPRR----------WLVV---DFKKVDWR-----------------------GYFNSM 208 (505)
Q Consensus 165 ~~~~~~~i~~~~~~~i~~~~~~~~~~----------~~~~---~~~~~~~~-----------------------~~~~~~ 208 (505)
.+......+.+.-+.+-.+......+ ..+. +....+|. ..|...
T Consensus 224 ~i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~ 303 (945)
T KOG1288|consen 224 NILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVF 303 (945)
T ss_pred hhhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhheee
Confidence 76554433333322222221111111 0000 00111222 122223
Q ss_pred HHHhcchHhhhhhhccccCcCcchhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCccccHHHHHHHHhcchHHHHHHHH
Q 010647 209 FWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQA 288 (505)
Q Consensus 209 ~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (505)
+-+.+|.-+.++|++|.|+|.|.+||+.+.++....++|++..+......|+..+.+.-. +.++. +...+++.+
T Consensus 304 F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~----v~~~i--sl~p~fi~i 377 (945)
T KOG1288|consen 304 FPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYD----VMMHI--SLHPPFILI 377 (945)
T ss_pred eccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchh----heeec--cccchHHHH
Confidence 345779999999999999999999999999999999999999999888887654432211 11111 123345556
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhcCCCh--hhhhccC-CCCCChHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHH
Q 010647 289 ASAMSNLGLFEAEMSGDAFQLLGMSEMGMLP--AIFASRS-KYGTPTLSILCSATGVIFLS-WMSFQEILEFLNFLYAIG 364 (505)
Q Consensus 289 ~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP--~~~~~~~-k~~~P~~ai~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 364 (505)
.++.+.+.+.+..+.++||+|.++|||+.+| -.++|.. +.+.|+.|+.+...+.-+.. +.+++.+..+.++.++++
T Consensus 378 Gi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA~~it~~FLlt 457 (945)
T KOG1288|consen 378 GILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIASMITMTFLLT 457 (945)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6666677777788899999999999999999 5667776 78999999999988876555 458999999999999999
Q ss_pred HHHHHHHHHHHHhhC-CCCCCCccccCchhHHHHHHHHHHHHHHHHHHHhhHH
Q 010647 365 MLLEFAAFIKLRIKK-PDLHRPYKVPLQTFGVTMLCLLPAVLLVLVMCLASLR 416 (505)
Q Consensus 365 ~~~~~~~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (505)
|..++++++.++... |+.+..||.- -+-.++++.+.++.+++.-+..
T Consensus 458 y~~vNLacl~LeissAPNFRPtFkyF-----~w~TclvG~l~s~~mMfvVd~~ 505 (945)
T KOG1288|consen 458 YGAVNLACLLLEISSAPNFRPTFKYF-----NWHTCLVGVLLSLGMMFVVDRI 505 (945)
T ss_pred HHHHHHHHHHhhhccCCCCCchhhhh-----hHHHHHHHHHHHHhhhheecch
Confidence 999999999888764 4433335532 2233566666777777665543
No 41
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.88 E-value=4.2e-19 Score=173.20 Aligned_cols=333 Identities=13% Similarity=0.048 Sum_probs=241.5
Q ss_pred cc-CCcCchhhhhhcCchH--HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhhhCChhHHHHHHHHHHHhh
Q 010647 35 SG-GPFGVEDSVKAGGGPL--LSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGV 111 (505)
Q Consensus 35 ~g-~~~~~~~~~~~~~G~~--~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~ 111 (505)
.| |.+-.|+.+...+|.. ..+++|++.++. ..+.+++ +.|++||.|.+.++.+||..|++.+|..++..-
T Consensus 9 fGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~-lpllgl~------av~~~gG~~~~l~~~~g~~f~~lf~~~~~l~iG 81 (378)
T TIGR00796 9 FGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVG-LPLLGLI------ALALVGGGYDSLSARIGKVFGILFTVILYLTIG 81 (378)
T ss_pred HhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHH-HHHHHHh------eeeecCCCHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 35 4555666664445433 367899999984 4445554 889999999999999999999999998765433
Q ss_pred hh-----HHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010647 112 LD-----NALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRI 186 (505)
Q Consensus 112 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~ 186 (505)
.. .++.++..+ +..++|....+....+..+++..+..++|+++.|...+++++++-..++.++++++.++.+.
T Consensus 82 P~~aiPRtaa~s~e~~--i~p~~~~~~~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP~lLi~l~~lii~g~~~p 159 (378)
T TIGR00796 82 PLFAIPRTATVSFEMG--IAPLLHSPTSLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTPALLVTLLALIIKALLWP 159 (378)
T ss_pred hchhhhHHHHHHHHHH--HHhccCcccchHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 22 233333322 34444431122334556667777778899999999999999999999999998888888654
Q ss_pred cCCcccc-cccCC-cChhHHHHHHHHHhc-------chHhhhhhhc-cccCcCcchhHHHHHHH-HHHHHHHHHHHHHHh
Q 010647 187 KPRRWLV-VDFKK-VDWRGYFNSMFWNLN-------YWDKASTLAG-EVENPSKTFPKALLGAV-VLVVSSYLIPLLAGT 255 (505)
Q Consensus 187 ~~~~~~~-~~~~~-~~~~~~~~~~~~a~~-------G~e~~~~~~~-E~k~p~~~ip~ai~~~~-~~~~~~y~~~~~~~~ 255 (505)
..+...+ ..... ..+...+...+++|. |+-.+..+.+ |.|||+|+.|+.+..++ ..+.+.|+...++..
T Consensus 160 ~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L~~l 239 (378)
T TIGR00796 160 AGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAGLIAAVLLAFIYLSLFYL 239 (378)
T ss_pred CCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3221111 11111 224444444567777 8888888888 99999999999999999 667777888888888
Q ss_pred hccCCCCcC---ccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhccCCCCCCh
Q 010647 256 GGLTSLSSE---WSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPT 332 (505)
Q Consensus 256 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~k~~~P~ 332 (505)
+..+.++.. +....+.++.++..|+....++.+.+.++++++.++.+.+.+ ++|++.++ ++|+
T Consensus 240 Ga~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a-------------~~f~~~~~-k~~y 305 (378)
T TIGR00796 240 GATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACS-------------EYFHKLVP-KLSY 305 (378)
T ss_pred hcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHhcC-CCCH
Confidence 887755432 356688999999999999999999999999999999888744 44666653 3999
Q ss_pred HHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhCCCCCCCccccC
Q 010647 333 LSILCSATG-VIFLSWMSFQEILEFLNFLYAIGMLLEFAAFIK--LRIKKPDLHRPYKVPL 390 (505)
Q Consensus 333 ~ai~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~~ 390 (505)
++.++...+ +.++...+++.+.++......+.|-+.....+. +||+.|+.+|+||.+.
T Consensus 306 ~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~~~~~~y~~~~ 366 (378)
T TIGR00796 306 KTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWDSKRAVYQITL 366 (378)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeehHH
Confidence 987666555 455557789999999988888888776655555 7888888889999854
No 42
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.87 E-value=2.5e-18 Score=170.68 Aligned_cols=365 Identities=17% Similarity=0.126 Sum_probs=262.0
Q ss_pred CccchhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhhhCCh
Q 010647 19 PKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPF 97 (505)
Q Consensus 19 r~l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~ 97 (505)
|+-+.++..++.+|+.+| |++++|..... +|....++..+++..+ +...++.++|.+.+.|...+.-..+++.+||.
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~-~Gf~~~~~~l~~~w~~-~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~ 78 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAG-AGFLPSLILLLIAWPL-MYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKK 78 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHh-CchHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHhChH
Confidence 345788899999999999 78899998888 7876666666777764 77899999999999999888889999999999
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhh-hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 010647 98 WGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFN-LLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFV 176 (505)
Q Consensus 98 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~ 176 (505)
++++.+..|++.......++....++.+.++++... .+.+.....+++..+...+.+.|.|...|+++++...+++.++
T Consensus 79 g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~g~~~v~~~n~~lv~~~i~~~~ 158 (394)
T PF03222_consen 79 GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYFGTKAVDRINRVLVFGMIISFI 158 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888888999999999999886543 3344556666677777888899999999999999999999999
Q ss_pred HHHHHHhccccCCcccccccCCcChhH---HHHHHHHHhcchHhhhhhhccccCcCcchhHHHHHHHHHHHHHHHHHHHH
Q 010647 177 VMGILSIPRIKPRRWLVVDFKKVDWRG---YFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLA 253 (505)
Q Consensus 177 ~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~~~~y~~~~~~ 253 (505)
.+++..+++.+.++.......+.+|.. .++.++++|.-...++.+.+..++-+|+++|+++.+..+..++|++..++
T Consensus 159 ~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~w~~~ 238 (394)
T PF03222_consen 159 ILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLLWVFS 238 (394)
T ss_pred HHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888877766542222334443 45667899999999999999999778889999999999999999999999
Q ss_pred HhhccCCCCcC---c---cccHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhccC
Q 010647 254 GTGGLTSLSSE---W---SDGYFAEVGML-IGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRS 326 (505)
Q Consensus 254 ~~~~~~~~~~~---~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~ 326 (505)
+.+.+|.++.. . +.+++....++ ..++....+..++..++..++..+...+..+.+. |. +++.+
T Consensus 239 ~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~----d~-----~k~~~ 309 (394)
T PF03222_consen 239 ILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLA----DL-----FKLKN 309 (394)
T ss_pred HHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-----HcCCc
Confidence 99988877621 1 12344444443 4566777777888888888888777777666543 32 22212
Q ss_pred -CCCCChHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCCCCCCccccCchhHHHH
Q 010647 327 -KYGTPTLSILCSATGVIFLSWM---SFQEILEFLNFLYA-IGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVTM 397 (505)
Q Consensus 327 -k~~~P~~ai~~~~~~~~~~~~~---~~~~l~~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 397 (505)
+.+. .....+..+..+++... .|....+....... +..+++.+...+.|+++ .+++|+.+.+......
T Consensus 310 ~~~~r-~~~~~ltf~ppl~~a~~~p~~F~~al~~aG~~~~il~~ilP~~m~~~~r~~~--~~~~~~~~gg~~~l~~ 382 (394)
T PF03222_consen 310 NSSGR-LKTWLLTFLPPLIFALLFPNGFLIALGYAGIGIAILLGILPALMVWKARKRK--PKQPYRVPGGNFTLLL 382 (394)
T ss_pred cccch-HHHHHHHHHhHHHHHHHCcHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHccc--CCCCeEEeCcHHHHHH
Confidence 1111 22223333333443332 23333444443322 33334444444444444 4455888776644333
No 43
>PHA02764 hypothetical protein; Provisional
Probab=99.86 E-value=9.9e-20 Score=164.77 Aligned_cols=279 Identities=16% Similarity=0.130 Sum_probs=176.5
Q ss_pred cccccccCCCccchhhHHHHHHHHhccCCc-Cchhhhhhc-CchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchh
Q 010647 10 VQQKAAKTSPKLTVLPLIALIFYEVSGGPF-GVEDSVKAG-GGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYV 87 (505)
Q Consensus 10 ~~~~~~~~~r~l~~~~~~~~~~~~i~g~~~-~~~~~~~~~-~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y 87 (505)
..|+.+.+-|+.+.++.++..++.+.++.. ..+..+... -|+ ..+++|++++++ +++.+++|+|+++++|++||.|
T Consensus 3 FvReSSGLVREvs~lDAF~~Nl~~m~~Gi~Is~~~l~a~l~pG~-nlLLAWLLGGLl-ALPgAL~YAELGSAmPrAGGdY 80 (399)
T PHA02764 3 FERKSSGIIKSFNILDIFSINLLYMGILSGISYPLFVSSLLKNV-NLLFAILIGAVF-EIPLLLMYYKLTTKFPLNGGDY 80 (399)
T ss_pred cchhcCCceeeccHHHHHHHHHHhhccchhHHHHHHHhhcCCch-hHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCceE
Confidence 456778999999999999999988854432 323323221 233 267899999995 9999999999999999999999
Q ss_pred HhHHhhhCChhHHHHHHHHHHHhhhhHHHHHHHHH-HHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 010647 88 IWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFL-DYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVS 166 (505)
Q Consensus 88 ~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~ 166 (505)
.|.+|++||.+|++.||..|..+....++.+-... +.. . ++......+..- +.....+-..|.|...|.-.+
T Consensus 81 VYISRAFGP~~GFLvG~a~WLtl~~G~Pal~~l~~~~~~---i---~~~~~~f~~~~s-~~~i~~~i~~~~~~~~~~v~i 153 (399)
T PHA02764 81 AYIRTAFSSKFYTIFGISLWLTYVLSQPILGDLVLLNFN---I---QNQFEQFLIVES-LFPIVLLIIANKKIYAKIVDI 153 (399)
T ss_pred EEhHHhhCccHHHHHHHHHHHHHHhhcchhhheeeeeee---e---HHHHHHHHHHHH-HHHHHHHHHcccHHHHHHHHH
Confidence 99999999999999999999998877665543321 110 0 111122221111 111222333456777776555
Q ss_pred HHHHHHHHHHHHHHHHhccccCCcccccccCCcChh-HHHHHHHHHhcchHhhhhhhccccCcCcchhHHHHHHHHHHHH
Q 010647 167 LLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWR-GYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVS 245 (505)
Q Consensus 167 ~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~~~ 245 (505)
+.....+ ..+... .+..|+...++.-.+.. .......-+|.-.|+....++|.||.+|....+...+...+.+
T Consensus 154 l~~a~~i---~aif~~---~~s~n~~~~~f~~snt~~~a~~~~l~~~~fi~a~~y~~~ei~n~~k~~~~gyf~s~~~~~~ 227 (399)
T PHA02764 154 LAIAQII---IAIFIA---FKSFNFQYQNFTISNTLLSALLFDLSAFIFINAISYIAGEIKNIKKSSMIGYFVSYGIVAI 227 (399)
T ss_pred HHHHHHH---HHHHhh---ccceeEEEcceeehHHHHHHHHHHHHHHHHhccHHHHHHHhhcchhhhhhhhHHHHHHHHH
Confidence 4333322 111111 12233322222111111 1111123467778999999999999999988888887766655
Q ss_pred HHHHHHHHHhhccCCCCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhcc
Q 010647 246 SYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASR 325 (505)
Q Consensus 246 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~ 325 (505)
+-++..+. + + .++-.......++-+....-..||+.++|+.|+.+|++|+|+
T Consensus 228 ~~ii~sy~-------------n--~-------------~il~~~~~~w~~~y~~~~~~~~srli~~~~fd~~lpe~f~k~ 279 (399)
T PHA02764 228 LSIIDSYS-------------N--L-------------NILFALMPIWFFSYMPIANKIQSRLIQTMSFDKVLPEKFSKI 279 (399)
T ss_pred HHHHHhhh-------------h--H-------------HHHHHHHHHHHHhheeeecchHHHHHHHHHhhhhchHHHhcc
Confidence 54433310 0 0 011111334455555556667999999999999999999998
Q ss_pred CCCCCCh
Q 010647 326 SKYGTPT 332 (505)
Q Consensus 326 ~k~~~P~ 332 (505)
|| ++|+
T Consensus 280 ~~-nv~~ 285 (399)
T PHA02764 280 NP-NVLL 285 (399)
T ss_pred CC-Ccee
Confidence 76 5777
No 44
>PRK10483 tryptophan permease; Provisional
Probab=99.86 E-value=5e-18 Score=166.67 Aligned_cols=369 Identities=12% Similarity=0.052 Sum_probs=260.2
Q ss_pred cCCCccchhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhhh
Q 010647 16 KTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAF 94 (505)
Q Consensus 16 ~~~r~l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~ 94 (505)
..|++.+.++..++..|+.+| |.+++|..... .|-.+.+...++..++ +...++.+.|.+.++|..-+.-+.+++.+
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~-~GF~~s~~~l~~~W~~-M~~taLlllEv~l~~~~g~~~~tma~~~L 83 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSG-AWFFWSMAALIFTWFC-MLHSGLMILEANLNYRIGSSFDTITKDLL 83 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHh-ccHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCCCHHHHHHHHc
Confidence 457889999999999999999 67899988888 7776666666666664 78899999999999999888899999999
Q ss_pred CChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 010647 95 GPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCP 174 (505)
Q Consensus 95 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~ 174 (505)
||.+..+.+.++.+-......++....++.++..++..+.+.+.....+++..++..+.+.|.|..+|+|+++...+++.
T Consensus 84 G~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~~l~~~~i~~ 163 (414)
T PRK10483 84 GKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAKVIT 163 (414)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 99999988888888877778889999999999888654333456677788888899999999999999999999999998
Q ss_pred HHHHHHHHhccccCCcccccccCC-cC---hhHHHHHHHHHhcchHhhhhhhccccCcCcchhHHHHHHHHHHHHHHHHH
Q 010647 175 FVVMGILSIPRIKPRRWLVVDFKK-VD---WRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIP 250 (505)
Q Consensus 175 ~~~~~i~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~~~~y~~~ 250 (505)
+++.+...+++.+.++..+..... .. ....++.++++|.-...++.+.++.++-.|+++|+++.+..+..++|++.
T Consensus 164 f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Iplv~yl~W 243 (414)
T PRK10483 164 FFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALALYTIW 243 (414)
T ss_pred HHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877777776665543322111 11 23455667888888899999998887655689999999999999999999
Q ss_pred HHHHhhccCCCCc------CccccHH-HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhh
Q 010647 251 LLAGTGGLTSLSS------EWSDGYF-AEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFA 323 (505)
Q Consensus 251 ~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~ 323 (505)
..++.+.+|.++. .++-+.+ ..+......+....+..++..++..+|..+...+....+..+-+
T Consensus 244 ~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k--------- 314 (414)
T PRK10483 244 LLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFG--------- 314 (414)
T ss_pred HHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------
Confidence 9999999997662 1111222 34444455566667777777777777776666666555443322
Q ss_pred ccC-CCCCChHHHHHHHHHHHHHHhhh---H-HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccCchhHHHHH
Q 010647 324 SRS-KYGTPTLSILCSATGVIFLSWMS---F-QEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVTML 398 (505)
Q Consensus 324 ~~~-k~~~P~~ai~~~~~~~~~~~~~~---~-~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 398 (505)
+.+ +.+... ..++.++-.+++.... | ..+.....+...+.-+++.+...+.|||.+ +.+|+.+++.....++
T Consensus 315 ~~~~~~~r~~-~~~ltflPPl~~al~~P~~Fl~AL~yAG~~~~il~~ilP~lM~~~~Rk~~~--~~~y~v~Gg~~~l~~~ 391 (414)
T PRK10483 315 FDDSAMGRFK-TALLTFLPPVVGGLLFPNGFLYAIGYAGLAATIWAAIVPALLARASRKRFG--SPKFRVWGGKPMIVLI 391 (414)
T ss_pred CCCcccccee-eehhhHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCceecCCHHHHHHH
Confidence 111 111111 1233444444444332 2 222222233333333445555555554432 4679988877554433
No 45
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.85 E-value=1.6e-17 Score=162.86 Aligned_cols=365 Identities=11% Similarity=0.008 Sum_probs=251.5
Q ss_pred chhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhhhCChhHH
Q 010647 22 TVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGF 100 (505)
Q Consensus 22 ~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~ 100 (505)
+.+...++..|+.+| |.+++|..... .|-.+..+..++..+ ++...++.+.|.+.++|..-+.-+.+++.+||.+..
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~-~Gf~~s~~ll~~~w~-~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAG-AWFFWGAFILIIAWF-SMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhc-ccHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHH
Confidence 677788899999999 67789988887 787666666676676 488899999999999999888999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhchh-hhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010647 101 QEGFWKWLSGVLDNALYPVLFLDYLKHSLPI-FNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMG 179 (505)
Q Consensus 101 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~ 179 (505)
+.+.++.+-......++....++.++..+++ .+.+.+.....+++.++...+.+.|.|...|+++++...+++.++..+
T Consensus 88 i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~~ii~f~~~~ 167 (415)
T PRK09664 88 ISGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISSLAASRITSLFLGLKIISFVIVF 167 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888887778889999999999888864 222234445667888889999999999999999999999998888877
Q ss_pred HHHhccccCCcccccccCCc------ChhHHHHHHHHHhcchHhhhhhhccccCcCcchhHHHHHHHHHHHHHHHHHHHH
Q 010647 180 ILSIPRIKPRRWLVVDFKKV------DWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLA 253 (505)
Q Consensus 180 i~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~~~~y~~~~~~ 253 (505)
....++.+..+......... .....++.++++|.-...++.+....++-.|+++|+++.+..+..++|++...+
T Consensus 168 ~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~IpLviY~~W~~~ 247 (415)
T PRK09664 168 GSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALVIYLFWLYC 247 (415)
T ss_pred HHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777666543222111 123345667788888888888888887666889999999999999999999999
Q ss_pred HhhccCCCCcC----c--c-ccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhccC
Q 010647 254 GTGGLTSLSSE----W--S-DGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRS 326 (505)
Q Consensus 254 ~~~~~~~~~~~----~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~ 326 (505)
....+|.++.. . + +...........+++...+..++..++..++..+...+....+..+ +++.+
T Consensus 248 ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~---------~~~~~ 318 (415)
T PRK09664 248 TMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADL---------FKIDN 318 (415)
T ss_pred HhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hCCCC
Confidence 99988866521 1 1 1122233334455666666677766677666665555554444332 22222
Q ss_pred -CCCCChHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHH
Q 010647 327 -KYGTPTLSILCSATGVIFLSWMS----FQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVTMLCL 400 (505)
Q Consensus 327 -k~~~P~~ai~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 400 (505)
+.+.. ....+.++-.+++.... ...+.........+.-+++.+...+.|||. .+.+||+|++.....+..+
T Consensus 319 ~~~~r~-~~~~ltflPPl~~al~~P~gFl~AL~yAG~~~~il~~ilP~lM~~~~Rk~~--~~~~y~v~GG~~~l~~~~~ 394 (415)
T PRK09664 319 SHGGRF-KTVLLTFLPPALLYLIFPNGFIYGIGGAGLCATIWAVIIPAVLAIKARKKF--PNQMFTVWGGNLIPAIVIL 394 (415)
T ss_pred ccccce-eeehhhHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCCCceeeCCHHHHHHHHH
Confidence 11111 11223444444444332 222222223333333344555555555443 2467999988865554433
No 46
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.85 E-value=1.5e-17 Score=164.15 Aligned_cols=364 Identities=14% Similarity=0.104 Sum_probs=257.6
Q ss_pred chhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhhhCChhHH
Q 010647 22 TVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGF 100 (505)
Q Consensus 22 ~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~ 100 (505)
+.+...++..|+.+| |.+++|..... +|....+...++...+ ....++.++|.+..+|...+.-+.+++.+||..++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~-~Gf~~~~~~li~~w~~-m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~ 81 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAG-VGFSVTLILLIGLWAL-MCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQW 81 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHh-ChHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHH
Confidence 567788889999999 67899988888 8876666656666553 66678889999999998778889999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhchhh-hhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010647 101 QEGFWKWLSGVLDNALYPVLFLDYLKHSLPIF-NLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMG 179 (505)
Q Consensus 101 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~ 179 (505)
+.+..|++.......++....++.+...++++ +.+.+.....+.+..+...+.+.|.|...|+++++...+++.++..+
T Consensus 82 i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~~ii~~~~~~ 161 (403)
T PRK15132 82 LTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCVGTSSVDLFNRFLFSAKIIFLVVML 161 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888889999999888777766542 11223334555666666678888999999999999999998888877
Q ss_pred HHHhccccCCcccccccCCcChhHHHHHHHHHhcchHhhhhhhccccCcCcchhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 010647 180 ILSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLT 259 (505)
Q Consensus 180 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~~~~y~~~~~~~~~~~~ 259 (505)
....++.+.+++...+.+.......++.++++|.-...++.+....++-+|+++|+++.+..+..++|++...++.+.+|
T Consensus 162 ~~l~p~~~~~~L~~~~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~ 241 (403)
T PRK15132 162 ALMMPHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQLATLGSID 241 (403)
T ss_pred HHHHHhcCHHHHhcCCccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 77778777776643221111244556777899999999999999988877999999999999999999999999999998
Q ss_pred CCCcC----cc---ccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhccCCCCCCh
Q 010647 260 SLSSE----WS---DGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPT 332 (505)
Q Consensus 260 ~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~k~~~P~ 332 (505)
.++.. ++ ++....+.+....++...+..++..++..++..+...+..+.+-.+-+.+. + .+.+..
T Consensus 242 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~------~-~~~r~~- 313 (403)
T PRK15132 242 STTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRN------T-VGGRLQ- 313 (403)
T ss_pred HHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc------c-ccCCch-
Confidence 77521 11 234555666667777777888888888888887777777766655432210 0 011211
Q ss_pred HHHHHHHHHHHHHHhhh---HHHHHHHH-HHHHHHHHHHHHHHHHHHHhhCCCCCCCccccCchhHHHHH
Q 010647 333 LSILCSATGVIFLSWMS---FQEILEFL-NFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVTML 398 (505)
Q Consensus 333 ~ai~~~~~~~~~~~~~~---~~~l~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 398 (505)
...+..+...++.... |....+.. .+...+..+++.....+.|++++ +++||.|++.....++
T Consensus 314 -~~~l~flppli~a~~~P~~F~~al~~aG~~~ail~~ilP~~m~~~~r~~~~--~~~y~v~gg~~~~~~v 380 (403)
T PRK15132 314 -TGLITFLPPLAFALFYPRGFVMALGYAGVALAVLALLLPSLLVWQSRKQNP--QAGYRVKGGRPALALV 380 (403)
T ss_pred -hehhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCccCCCChHHHHHH
Confidence 2234444444444332 33222332 23444455566666666664422 4679988877544443
No 47
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=99.82 E-value=2.4e-19 Score=175.71 Aligned_cols=398 Identities=16% Similarity=0.079 Sum_probs=280.7
Q ss_pred CCCccchhhHHHH-HHHHhccC-Cc-CchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCchhHhHHh
Q 010647 17 TSPKLTVLPLIAL-IFYEVSGG-PF-GVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPE-NGGYVIWISS 92 (505)
Q Consensus 17 ~~r~l~~~~~~~~-~~~~i~g~-~~-~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~-~Gg~y~~~~~ 92 (505)
-+-++|+|+.++. +.-++-|- .| -++-.+.+ +|-...++...+... .++.++++..-++++-.. +||.|...+|
T Consensus 26 ~~v~fg~~~gv~~~cmlni~gv~lflrl~wivgq-agi~~~~~ii~~~~~-vt~it~lSa~~I~t~~~vk~Gg~yflis~ 103 (643)
T KOG2083|consen 26 GPVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQ-AGIGNSVLIIGLTTV-VTLITVLSAIAIVTRGQVKSGGVYFLISR 103 (643)
T ss_pred CceEEeeeehhhhhhhHHHHHHHHhhhhhheeec-chhhhhHHHHHHHHH-HHHHHHHhHheeeecceeccCcEEEEEEe
Confidence 3457899988876 44455442 22 22333344 666544444444444 377788888888887665 7999999999
Q ss_pred hhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 010647 93 AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL 172 (505)
Q Consensus 93 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i 172 (505)
.+||..|-..|.+|.++.....+.+..++++-+..++.... .+....++.+.+.+...+|..|+++..|+|.++..+..
T Consensus 104 slg~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s-~~~i~gi~~vt~~ill~i~~ag~~w~~k~q~~ll~il~ 182 (643)
T KOG2083|consen 104 SLGPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETES-KEMIDGIGSVTVLILLAINVAGVEWEAKLQIVLLLILL 182 (643)
T ss_pred cccccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcc-HHHhcchhHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887553 22333377777888899999999999999999888877
Q ss_pred HHHHHHHHHHhcccc-C-------------CcccccccCCcChhHHHHHHHHHhcchHhhhhhhccccCcCcchhHHHHH
Q 010647 173 CPFVVMGILSIPRIK-P-------------RRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLG 238 (505)
Q Consensus 173 ~~~~~~~i~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~ 238 (505)
+.+.-..+..+...+ . .++.+...+...|...|...+-+.+|.-+-++++++.|||++++|++.+.
T Consensus 183 iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~IP~GaL~ 262 (643)
T KOG2083|consen 183 IAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDPQKAIPLGALL 262 (643)
T ss_pred HHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCchhhcccchhh
Confidence 777777666654332 0 01111111122444555665668899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCcC------cccc--HHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 010647 239 AVVLVVSSYLIPLLAGTGGLTSLSSE------WSDG--YFAEVGMLI-GGFWLKWWIQAASAMSNLGLFEAEMSGDAFQL 309 (505)
Q Consensus 239 ~~~~~~~~y~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 309 (505)
+..+...+|.........+.-.+... .... -+.+-.+.. .-......+......+..++..+++.++.+++
T Consensus 263 Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smvS~~~Pl~~AGi~~a~LSsalsslVsap~V~ 342 (643)
T KOG2083|consen 263 AIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMVSTFGPLITAGILAAELSSALSSLVSAPKVL 342 (643)
T ss_pred hhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHHhHhhcccchhhHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999987776655443322211 1100 111111111 11122333445555667777888899999999
Q ss_pred HHHHhcCCCh--hhhhccC-CCCCChHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q 010647 310 LGMSEMGMLP--AIFASRS-KYGTPTLSILCSATGVIFLS-WMSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRP 385 (505)
Q Consensus 310 ~a~a~dg~lP--~~~~~~~-k~~~P~~ai~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 385 (505)
+++.+|...| .++.|-. |.+.|+++..+....+..+. ....+.+..+.+..+..+|.+.+.+++.-+...++.+||
T Consensus 343 QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL~syAlinf~~f~aSl~~s~~wRp 422 (643)
T KOG2083|consen 343 QALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFLLSYALINFSCFHASLAISEGWRP 422 (643)
T ss_pred HHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhhhhhhccchhhhhhhhccccccCc
Confidence 9999999999 7788777 89999999999988887665 345777778888889999999988888766666555554
Q ss_pred -ccccCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 010647 386 -YKVPLQTFGVTMLCLLPAVLLVLVMCLASLRTFIVSG 422 (505)
Q Consensus 386 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (505)
++... -++++++.+.++..++...+...++..
T Consensus 423 ~f~~yn-----~wVSllGalKOG~ImFli~w~aaLi~~ 455 (643)
T KOG2083|consen 423 SFKFYN-----AWVSLLGALLCLAIMFLISWWAALITF 455 (643)
T ss_pred hhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33321 255666777777777776665555443
No 48
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.81 E-value=5.3e-17 Score=160.82 Aligned_cols=288 Identities=13% Similarity=0.052 Sum_probs=211.3
Q ss_pred hHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCchhHhHHhhhCChhHHHH
Q 010647 25 PLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPE-NGGYVIWISSAFGPFWGFQE 102 (505)
Q Consensus 25 ~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~-~Gg~y~~~~~~~g~~~g~~~ 102 (505)
.-....+|+++| |++.+|..... .|....+++.+++..+ +...+..+.|.....|. ..+.+.++++.+||.+|++.
T Consensus 7 ~w~~~l~gt~IGaGiL~LP~~ag~-~G~i~~li~~l~~~pl-~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii 84 (397)
T TIGR00814 7 GWMLGLYGTAIGAGVLFLPIQAGL-GGLWVLVLMAIIAYPL-TYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILI 84 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHH
Confidence 344556778888 67888887555 4443333333333332 33344455666544454 67899999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhchhh-h-hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010647 103 GFWKWLSGVLDNALYPVLFLDYLKHSLPIF-N-LLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGI 180 (505)
Q Consensus 103 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i 180 (505)
++.|++.......+++....+.+.+++... . +..++.+..++++++...++..|.|..+|++.++....++.++++.+
T Consensus 85 ~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~ 164 (397)
T TIGR00814 85 TLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLSL 164 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888888888888877776532 1 12244566777777778999999999999999999999888888888
Q ss_pred HHhccccCCcccccccCCcC---hhHHHHHHHHHhcchHhhhhhh----ccccCc---CcchhHHHHHHHHHHHHHHHHH
Q 010647 181 LSIPRIKPRRWLVVDFKKVD---WRGYFNSMFWNLNYWDKASTLA----GEVENP---SKTFPKALLGAVVLVVSSYLIP 250 (505)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~a~~G~e~~~~~~----~E~k~p---~~~ip~ai~~~~~~~~~~y~~~ 250 (505)
..+++.+.++.......... .....+..+|+|.|+|..++++ ||-+|| +|+..|++..+..+..++|++.
T Consensus 165 ~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~ 244 (397)
T TIGR00814 165 YLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFF 244 (397)
T ss_pred HHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777776432211112 3344566789999999999998 666655 5778899999999999999999
Q ss_pred HHHHhhccCCCCcC----ccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHh
Q 010647 251 LLAGTGGLTSLSSE----WSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSE 314 (505)
Q Consensus 251 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~ 314 (505)
.+++...+++++.. ++-+.+..+.+....+....+..+...++..++..+...+....+..+-+
T Consensus 245 ~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~ 312 (397)
T TIGR00814 245 VFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVL 312 (397)
T ss_pred HHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999887732 22334566666777787777777777777777777777777777766664
No 49
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.79 E-value=1.2e-15 Score=152.59 Aligned_cols=280 Identities=16% Similarity=0.092 Sum_probs=223.9
Q ss_pred cCCCccchhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-chhHhHHhh
Q 010647 16 KTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENG-GYVIWISSA 93 (505)
Q Consensus 16 ~~~r~l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~G-g~y~~~~~~ 93 (505)
..+++-+..+.+.+.+++.+| |++.+|..... +|-...++..++.+.+ +....+++.|...+.|+.. +.+.-+++.
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~-~G~~~~l~~l~i~~~~-t~~s~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGG-GGFWPGLLLLIIAWPL-TYLSLLLLLEALLSSPNGKASITSLVEDY 81 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHhcC-CcHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCcccHHHHHHHH
Confidence 456677888999999999999 78899999988 8877777777777774 8889999999999999984 899999999
Q ss_pred hCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchh-hhhh-hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 010647 94 FGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPI-FNLL-IARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFS 171 (505)
Q Consensus 94 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~ 171 (505)
+||.++++.+..+.+.......++....++.+...++. .... ..+.+..+++..+...+.+.|.+...|.++.+...+
T Consensus 82 ~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~ 161 (415)
T COG0814 82 LGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGK 161 (415)
T ss_pred hCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998875 2222 677777778888888899999999999999999999
Q ss_pred HHHHHHHHHHHhccccCCcccccc----cCCcChhHHHHHHHHHhcchHhhhhhhccccCcCcc-hhHHHHHHHHHHHHH
Q 010647 172 LCPFVVMGILSIPRIKPRRWLVVD----FKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKT-FPKALLGAVVLVVSS 246 (505)
Q Consensus 172 i~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~~~-ip~ai~~~~~~~~~~ 246 (505)
++.+++++....++.++.+..... .....+...++.++++|.+.-..+.+..|.|++.++ ++|++..+..+..++
T Consensus 162 v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vl 241 (415)
T COG0814 162 VIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVL 241 (415)
T ss_pred HHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHHHH
Confidence 999998888887776555443221 222345566677899999999999999999988877 999999999999999
Q ss_pred HHHHHHHHhhccCCCCc------Ccccc-HHHHHHHHhcchHHHHHHHHHHHHHHHHH
Q 010647 247 YLIPLLAGTGGLTSLSS------EWSDG-YFAEVGMLIGGFWLKWWIQAASAMSNLGL 297 (505)
Q Consensus 247 y~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (505)
|+...+....+.+.+.. ..+.. ...........+.......+...++..++
T Consensus 242 yi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tS 299 (415)
T COG0814 242 YILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATS 299 (415)
T ss_pred HHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 99999999999987741 11222 33333344445545555555555555444
No 50
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.78 E-value=1e-15 Score=150.31 Aligned_cols=286 Identities=14% Similarity=0.056 Sum_probs=216.3
Q ss_pred HHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCchhHhHHhhhCChhHHHHHHH
Q 010647 28 ALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSF-PENGGYVIWISSAFGPFWGFQEGFW 105 (505)
Q Consensus 28 ~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~-P~~Gg~y~~~~~~~g~~~g~~~g~~ 105 (505)
...+|+.+| |.+.+|-.... +|....++..+++..+ +...++.+.|..... |...+.-..+++.+|+.++.+.+..
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~-~Gf~p~lillll~~p~-m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~il 103 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGF-GGLIPILLMLVLAYPI-AFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFL 103 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhc-chHHHHHHHHHHHHHH-HHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHH
Confidence 456777788 67888988888 8876666666666664 677789999999998 5555567799999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhchh-hhh-hhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010647 106 KWLSGVLDNALYPVLFLDYLKHSLPI-FNL-LIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSI 183 (505)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~ 183 (505)
|++.......++.....+.+.+++.. .+. +.++.+.++++..+...+.+.|.|...|+++++...+++.++.+.+..+
T Consensus 104 Yff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~l~~l~~~Li 183 (443)
T PRK13629 104 YFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLSLI 183 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888887777777665321 221 3457788888999999999999999999999999999999999999999
Q ss_pred ccccCCcccccccC------CcC----hhHHHHHHHHHhcchHhhhhhhcc----c------cCcCcchhHHHHHHHHHH
Q 010647 184 PRIKPRRWLVVDFK------KVD----WRGYFNSMFWNLNYWDKASTLAGE----V------ENPSKTFPKALLGAVVLV 243 (505)
Q Consensus 184 ~~~~~~~~~~~~~~------~~~----~~~~~~~~~~a~~G~e~~~~~~~E----~------k~p~~~ip~ai~~~~~~~ 243 (505)
++.+.+++...+.+ ..+ ....++.++++|.-.-.++.++.. . ++.+|+..|++..+..+.
T Consensus 184 P~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~ 263 (443)
T PRK13629 184 PYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLM 263 (443)
T ss_pred HHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHH
Confidence 98887776532210 101 223446667777765555555444 3 233588899999999999
Q ss_pred HHHHHHHHHHHhhccCCCCcC----ccccHHHHHHHHhcc---------hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 010647 244 VSSYLIPLLAGTGGLTSLSSE----WSDGYFAEVGMLIGG---------FWLKWWIQAASAMSNLGLFEAEMSGDAFQLL 310 (505)
Q Consensus 244 ~~~y~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 310 (505)
.++|++..+++...+++++.. .+.+.+..+++...+ +....+..+...++..++..+...+....+.
T Consensus 264 lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~ 343 (443)
T PRK13629 264 VAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLN 343 (443)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988732 233347777777766 5667777777777777777777777777777
Q ss_pred HHHhc
Q 010647 311 GMSEM 315 (505)
Q Consensus 311 a~a~d 315 (505)
.+.++
T Consensus 344 gl~~~ 348 (443)
T PRK13629 344 GLILK 348 (443)
T ss_pred HHHHH
Confidence 77653
No 51
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.51 E-value=1.1e-11 Score=120.93 Aligned_cols=279 Identities=18% Similarity=0.120 Sum_probs=218.2
Q ss_pred ccchhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhhhCChh
Q 010647 20 KLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFW 98 (505)
Q Consensus 20 ~l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~ 98 (505)
|+|..|.+.+.+..++| +....|..+...+| ..+++.++++++ .+..++.+..+.+++|+. ..+.+.++.+||..
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~--d~Wi~~ll~~~~-~l~~~~l~~~l~~~~p~~-~l~~~~~~~~Gk~l 76 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG--DAWISVLLGGLI-GLLLALLIYYLLKRFPGK-TLVEISEKLFGKWL 76 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHH-HHHHHHHHHHHHHHCCCC-CHHHHHHHHhCcHH
Confidence 57889999999988888 56677777655354 234556666664 777899999999999995 68999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhc-hhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 010647 99 GFQEGFWKWLSGVLDNALYPVLFLDYLKHSL-PIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVV 177 (505)
Q Consensus 99 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~ 177 (505)
|...+..+.+.+....+......++.++..+ | ..+.+.+...+++.+......|.+..+|.+.+...+.++.++.
T Consensus 77 g~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp----~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~~~ 152 (320)
T PF03845_consen 77 GKIINLLYILYFLLISALVLREFSEFIKTYLLP----ETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLILLLL 152 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888754 5 5677788888889999999999999999888888887777777
Q ss_pred HHHHHhccccCCcccccccCCcChhHHH---HHHHHHhcchHhhhhhhccccCcCcchhHHHHHHHHHHHHHHHHHHHHH
Q 010647 178 MGILSIPRIKPRRWLVVDFKKVDWRGYF---NSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAG 254 (505)
Q Consensus 178 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~~~~y~~~~~~~ 254 (505)
+........+.++..|.. +.++...+ ....+.|.|.|....+....|||+ +..|....+...+++++.+..+..
T Consensus 153 i~~~~~~~~~~~~l~P~~--~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~-~~~k~~~~~~~~~~~~~~~~~~~~ 229 (320)
T PF03845_consen 153 ILLLSIPNIDWDNLLPVL--ESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKK-KLKKSLLIAILISGLFLLFIIFIT 229 (320)
T ss_pred HHHHhcccCCHHHeeCcc--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666666766666533 23444333 334677899999999999999974 578999999999999999999999
Q ss_pred hhccCCCCcCccccHHHHHHHHhcch----HHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 010647 255 TGGLTSLSSEWSDGYFAEVGMLIGGF----WLKWWIQAASAMSNLGLFEAEMSGDAFQL 309 (505)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 309 (505)
....+.++.+...-|...+.+...-+ ....++...-..+.+.....+++.+++.+
T Consensus 230 i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~ 288 (320)
T PF03845_consen 230 IGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGL 288 (320)
T ss_pred HHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888777778888888777533 33444444445555556666666666554
No 52
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=99.35 E-value=6.2e-10 Score=109.28 Aligned_cols=290 Identities=13% Similarity=0.121 Sum_probs=175.1
Q ss_pred ccCCCccchhhHHHHHHHHhcc-C-CcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-------CCc
Q 010647 15 AKTSPKLTVLPLIALIFYEVSG-G-PFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPE-------NGG 85 (505)
Q Consensus 15 ~~~~r~l~~~~~~~~~~~~i~g-~-~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~-------~Gg 85 (505)
.+.+++++.++.+..+++..+| | +.+....+.. +||+...|-|+.+.+ .+.+.++=.-|+.+|.+ .||
T Consensus 13 ~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~-GGPGAiFWMWi~a~~--Gmatk~~E~~La~~yR~~~~~G~~~GG 89 (416)
T PF01235_consen 13 KEEEGGISPFQALCTALAGTVGTGNIAGVATAIAI-GGPGAIFWMWISALL--GMATKYAEVTLAQKYREKDEDGEYRGG 89 (416)
T ss_pred CCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHh-hchhHHHHHHHHHHH--HHHHHHHHHHHHHHheEECCCCCEeec
Confidence 3456789999999999999988 3 6688888888 999888888887665 34344444444544442 488
Q ss_pred hhHhHHhhhCChh-HHHHHHHHHHHhhhh-HHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 010647 86 YVIWISSAFGPFW-GFQEGFWKWLSGVLD-NALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFS 163 (505)
Q Consensus 86 ~y~~~~~~~g~~~-g~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 163 (505)
..+|.++.+|.++ +.+.+......+... ...+....++.++..++ ++.+..++++..+..++..-|+|..+++
T Consensus 90 P~yyi~~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f~-----i~~~~~gi~l~~l~~~vi~GGikrI~~v 164 (416)
T PF01235_consen 90 PMYYIEKGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSSAFG-----IPPWITGIILAILVALVIFGGIKRIAKV 164 (416)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcc-----ccHHHHHHHHHHHHHHHHHcchhHHHHH
Confidence 9999999998653 433333322332222 34445555555544333 4556677777777888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCcccc-------cccCCcC-hhHHHHH-----H-------HHH---hcchHhhhh
Q 010647 164 AVSLLVFSLCPFVVMGILSIPRIKPRRWLV-------VDFKKVD-WRGYFNS-----M-------FWN---LNYWDKAST 220 (505)
Q Consensus 164 ~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~-----~-------~~a---~~G~e~~~~ 220 (505)
...+.-++.+..++.++..+.. +.++..+ ..+++.. ..++... + +|+ =.|....+|
T Consensus 165 ~~~lVP~Ma~~Yi~~~l~ii~~-n~~~ip~~~~~If~~AF~~~aa~GG~~G~~i~~ai~~Gv~Rg~fSNEAG~Gsa~~a~ 243 (416)
T PF01235_consen 165 SEKLVPFMAILYILGGLIIIII-NIDQIPAAFSLIFSSAFTPKAAFGGFAGSTIMMAIRQGVARGLFSNEAGLGSAPIAH 243 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHcCCccchhhHHHHHHHHHHHHhhhhhhccCCCCCChhHHHH
Confidence 9888877776665554443321 1121111 0111111 1121111 1 121 227788888
Q ss_pred hhccccCcCcchhHHHHHHHHHHHHHHHHHHHHHhhccCCCC-cCccccH-HHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 010647 221 LAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLS-SEWSDGY-FAEVGMLIGGFWLKWWIQAASAMSNLGLF 298 (505)
Q Consensus 221 ~~~E~k~p~~~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (505)
-+.|+++|.|+--.+++-..+-..++=.+..+.++..-.+.. ....+.. ....+++..+++...++.++.++..+++.
T Consensus 244 a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~~~v~i~l~lFafTTi 323 (416)
T PF01235_consen 244 AAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGPYFVAIALFLFAFTTI 323 (416)
T ss_pred HHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 888999998865555444444333333333333332211111 1112223 34556666777888889999999999999
Q ss_pred HHHhhhhhHHHHHHH
Q 010647 299 EAEMSGDAFQLLGMS 313 (505)
Q Consensus 299 ~~~~~~~sR~l~a~a 313 (505)
.++.+-.-|.+.-+-
T Consensus 324 lg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 324 LGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHc
Confidence 999888877765443
No 53
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.23 E-value=8.3e-09 Score=102.84 Aligned_cols=344 Identities=16% Similarity=0.158 Sum_probs=204.2
Q ss_pred cCCCccchhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc-----hhHh
Q 010647 16 KTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGG-----YVIW 89 (505)
Q Consensus 16 ~~~r~l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg-----~y~~ 89 (505)
..+|.-++++..+-.++.++| |..++|..+.+ .|...-+...++.+++ +.-++..+.++-...|.-.| +-..
T Consensus 33 ~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~-lGW~~G~~~Ll~~~ii-t~YT~~LL~~~~~~~~~~~~~r~~~Y~dl 110 (437)
T KOG1303|consen 33 TPSRGGSWWQAAFHIINALIGAGVLSLPYALAQ-LGWISGIVILLLFAII-TLYTATLLSRCWEMHEAVPGKRRYRYPDL 110 (437)
T ss_pred ccCCCCcceehhhheehhhhhhhhhhhHHHHHh-CchHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCCCCccCCChHHH
Confidence 347889999999999999999 68899999988 7765534555555653 66667667788888887777 5567
Q ss_pred HHhhhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhh---h--hHHHHHHHHHHHHHHHH-HhhhHHHHHH
Q 010647 90 ISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLL---I--ARIPALLGITGALTYLN-YRGLHIVGFS 163 (505)
Q Consensus 90 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~i~-~~g~~~~~~~ 163 (505)
+++.+|++.-+++++...+........+....++-+..+++....+ . ..+.+ ++..++.... +...+....+
T Consensus 111 ~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~i--if~~i~~~~s~lp~~~~l~~~ 188 (437)
T KOG1303|consen 111 GQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFII--IFGLIVLPLSQLPNFHSLSYL 188 (437)
T ss_pred HHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhh--hHHHHHHHHHHCCCcchhHHH
Confidence 8889998888899998888888888888899999998887654211 1 12222 2222222222 2223334444
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCccc--c-cccCCcCh-hHHHHHHHHHhcchHhhhhhhccccCcCcchhHHHHHH
Q 010647 164 AVSLLVFSLCPFVVMGILSIPRIKPRRWL--V-VDFKKVDW-RGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGA 239 (505)
Q Consensus 164 ~~~~~~~~i~~~~~~~i~~~~~~~~~~~~--~-~~~~~~~~-~~~~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~ 239 (505)
..+.....+....+..+++..+.-..+.. + ....+... ...+....|+|.|.-...++-..+|+|++ ++|+.+.+
T Consensus 189 S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~-f~~~~lis 267 (437)
T KOG1303|consen 189 SLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPK-FKKALLIS 267 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchh-hhhHHHHH
Confidence 44444444333333334444332111111 0 01111111 23444567999999999999999999988 99999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCcCccccHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-CC
Q 010647 240 VVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLI-GGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEM-GM 317 (505)
Q Consensus 240 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d-g~ 317 (505)
..++..+|+..++.-....+++..+ ++.... ...+......+++.+-.+++..-+ +.-++...+. -.
T Consensus 268 ~~~~~~~y~~vai~GY~aFG~~~~~-------~il~s~~~p~~~~~~ani~i~~h~i~s~~i~----a~pl~~~~E~~~~ 336 (437)
T KOG1303|consen 268 YIIVTFLYFPVAIIGYWAFGDSVPD-------NILLSLQPPTWLIALANILIVLHLIGSYQIY----AQPLFDVVEKLIG 336 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhccccch-------hhhhcccCchhHHHHHHHHHHHHHhhhhhhh----hcchHHHHHHHhc
Confidence 9999999999999988888765432 222222 244555555566555555554322 2222222221 11
Q ss_pred Ch-hhhhc-cCCCCCChHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 010647 318 LP-AIFAS-RSKYGTPTLSILCSATGVIFLSWMSFQEILEFLNF--LYAIGMLLEFAAFIKL 375 (505)
Q Consensus 318 lP-~~~~~-~~k~~~P~~ai~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~ 375 (505)
.+ +.+.+ .+-.+.=.|...+.....+...+..|+.+.++... .....+.++++.++..
T Consensus 337 ~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~ 398 (437)
T KOG1303|consen 337 VKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLI 398 (437)
T ss_pred cCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 11222 11122222333222222233334456666655544 3445777788877655
No 54
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=99.23 E-value=3.9e-08 Score=97.31 Aligned_cols=285 Identities=12% Similarity=0.122 Sum_probs=166.6
Q ss_pred CCccchhhHHHHHHHHhcc-C-CcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---CC----CchhH
Q 010647 18 SPKLTVLPLIALIFYEVSG-G-PFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFP---EN----GGYVI 88 (505)
Q Consensus 18 ~r~l~~~~~~~~~~~~i~g-~-~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P---~~----Gg~y~ 88 (505)
+++++.++.+..++++.+| | +.+.+..+.. +||....|-|+.+.+ .....++-.-++.++. .. ||.-+
T Consensus 44 ~g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~-GGpGAvFWMWI~all--Gm~~~~~e~~L~~~yr~~~~~g~~~GGP~y 120 (425)
T TIGR00835 44 KGGVSSFQALFTSLAARVGIGNIVGVATAIAI-GGPGAVFWMWVTAFI--GMATKFVESTLAQKYRERDADGVFRGGPMY 120 (425)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHHHHHHHHHh-cCCCchHHHHHHHHH--HHHHHHHHHHHHHHeeeeCCCCCEecChHH
Confidence 3569999999999999988 4 7788888877 999888887776655 3323333333444333 22 34447
Q ss_pred hHHhhhC-ChhHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 010647 89 WISSAFG-PFWGFQEGFWKWLSG-VLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVS 166 (505)
Q Consensus 89 ~~~~~~g-~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~ 166 (505)
|.++.++ |.+|.+.... .+.+ ......+....++.++..++ .+.+...+++.++...+..-|.|..+++...
T Consensus 121 yi~~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~~-----~~~~v~~i~l~~l~~~vi~GGik~Ia~v~~~ 194 (425)
T TIGR00835 121 YIKKGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAFN-----VPKLVTGIVLTVLTALIIFGGLKRIAKISSV 194 (425)
T ss_pred HHHHHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHcC-----CcHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 7788766 6667666655 3333 33456666666666664332 3456666666667677766799999999988
Q ss_pred HHHHHHHHHHHHHHHHhccccCCcccc-------cccCCcCh-hHHHH-----HH-------HHH---hcchHhhhhhhc
Q 010647 167 LLVFSLCPFVVMGILSIPRIKPRRWLV-------VDFKKVDW-RGYFN-----SM-------FWN---LNYWDKASTLAG 223 (505)
Q Consensus 167 ~~~~~i~~~~~~~i~~~~~~~~~~~~~-------~~~~~~~~-~~~~~-----~~-------~~a---~~G~e~~~~~~~ 223 (505)
+.-+..+..++..+..+. .+.++..+ ..+++... .+... .+ .|+ =.|....+|-+.
T Consensus 195 lvP~m~~~Y~~~~l~ii~-~n~~~lp~~~~~If~~AF~~~a~~GG~~G~~v~~ai~~Gv~Rg~fSNEAG~Gsa~~a~a~a 273 (425)
T TIGR00835 195 VVPFMALLYVIMALYIII-MNIEQLPAVISLIFRSAFGGDAAAGGFAGSTVAQAIMIGVKRGLFSNEAGMGSAPIAAAAA 273 (425)
T ss_pred HHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHHhhHHHHhccccccCcHHHHHHHh
Confidence 887776665444332221 12222111 01111111 11111 11 121 227778888899
Q ss_pred cccCcCcchhHHHHHHHHHHHHHHHHHHHHHhhccCCCCc-CccccHHH-HHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Q 010647 224 EVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSS-EWSDGYFA-EVGMLIGGFWLKWWIQAASAMSNLGLFEAE 301 (505)
Q Consensus 224 E~k~p~~~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (505)
|++||.|+-=.+++-..+-..++=.+..+.+...-.+++. ...+..+. ..+++..+++...++.++..+..+++..++
T Consensus 274 ~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~g~~lt~~af~~~~g~~g~~~v~i~~~lFaftTii~~ 353 (425)
T TIGR00835 274 QVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLSGAQLTQQALSYGLGSFGAVFVAVALFLFAFSTIIGW 353 (425)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999988655555444442232222222322221112211 11122333 345555666777888888889999999888
Q ss_pred hhhhhHHHHHH
Q 010647 302 MSGDAFQLLGM 312 (505)
Q Consensus 302 ~~~~sR~l~a~ 312 (505)
.+-.-+.+.-+
T Consensus 354 ~yyge~~~~yl 364 (425)
T TIGR00835 354 YYYGEKNAEFL 364 (425)
T ss_pred HHHHHHHHHHh
Confidence 87777766444
No 55
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.19 E-value=7.2e-08 Score=94.75 Aligned_cols=241 Identities=16% Similarity=0.157 Sum_probs=158.0
Q ss_pred CccchhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHH---HHHHHHHHHHhhccCCCC-----------
Q 010647 19 PKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIW---SIPEALITAELATSFPEN----------- 83 (505)
Q Consensus 19 r~l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~---~~~~a~~~~el~s~~P~~----------- 83 (505)
+..+..+.+.=-+-.++| |.++.|..... +|...-.+.-++.+++. .....-|.-+++++.-..
T Consensus 45 ~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~-sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 45 HPTSATQTLIHLLKGSIGTGILSLPLAFKN-SGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCchHHHHHHHHHhhhccccccChHHHHh-cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 346777777666667778 78999999988 66543222223322211 223345666777775221
Q ss_pred -CchhHhHHhhhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchh-hhhhhhHHHHHHHHHHHHHHHHH-hhhHHH
Q 010647 84 -GGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPI-FNLLIARIPALLGITGALTYLNY-RGLHIV 160 (505)
Q Consensus 84 -Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~-~g~~~~ 160 (505)
.+.|.| .|.+||...+++-....+.+...++++....++-+...... ....+...+...+.+.....+|. +..|..
T Consensus 124 ~~~~~~~-~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~~Ir~Lk~L 202 (449)
T KOG1304|consen 124 MEGGPGW-LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLNLIRNLKIL 202 (449)
T ss_pred HcCCcHH-HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 112335 67789999999999999999999999999999999888762 22333443333344444444443 345665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCcccccccCCcChhHHHHHHHHHhcchHhhhhhhccccCcCcchh---HHHH
Q 010647 161 GFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFP---KALL 237 (505)
Q Consensus 161 ~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~~~ip---~ai~ 237 (505)
.-+..+.-++.++.++++....+....+.+-.+...+..+|.-++..++|+|-|...+-.+=+++|+|+ +.| +.+-
T Consensus 203 sp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~-~F~g~~gVLn 281 (449)
T KOG1304|consen 203 SPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQ-KFPGPFGVLN 281 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChh-hcCCccchHH
Confidence 555555555555555555444443322111111112234677778888999999999999999999995 477 9999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCC
Q 010647 238 GAVVLVVSSYLIPLLAGTGGLTSLS 262 (505)
Q Consensus 238 ~~~~~~~~~y~~~~~~~~~~~~~~~ 262 (505)
.++.++.++|+...+.-....+++.
T Consensus 282 ~~M~~V~~ly~~~Gf~GYl~fG~~v 306 (449)
T KOG1304|consen 282 LGMGIVTLLYIFLGFFGYLAFGDDV 306 (449)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccc
Confidence 9999999999999998888887664
No 56
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=99.15 E-value=2.9e-07 Score=89.59 Aligned_cols=289 Identities=11% Similarity=0.102 Sum_probs=181.8
Q ss_pred cCCCccchhhHHHHHHHHhcc-C-CcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-------CCch
Q 010647 16 KTSPKLTVLPLIALIFYEVSG-G-PFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPE-------NGGY 86 (505)
Q Consensus 16 ~~~r~l~~~~~~~~~~~~i~g-~-~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~-------~Gg~ 86 (505)
+.++.++.++.+..+.+.-+| | +.+....+.. +||+...|-|+.+.+ ...+.++=+-|+..|.+ .||.
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~-GGPGAvFWMWi~Al~--Gmat~f~E~~La~~Yr~kd~~G~~~GGP 134 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIAL-GGPGAVFWMWIVALF--GMATKFAESTLAQKYRVKDKDGEYRGGP 134 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHc-CCCccHHHHHHHHHH--HHHHHHHHHHHHhheeEeCCCCCCcCCh
Confidence 567889999999999999988 3 5688888888 999988888887765 44455554556666652 4788
Q ss_pred hHhHHhhhC-ChhHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 010647 87 VIWISSAFG-PFWGFQEGFWKWLSGV-LDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSA 164 (505)
Q Consensus 87 y~~~~~~~g-~~~g~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 164 (505)
-+|.++.+| |.+|.+-+......+. .....++.++++.++..++ ++.++.++++.++..++-.-|+|..+++.
T Consensus 135 ~yYi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~-----~~~~~~gi~la~l~~~VI~GGi~rIa~v~ 209 (452)
T COG1115 135 AYYIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFG-----IPPLVTGIVLALLVALVIFGGIKRIAKVS 209 (452)
T ss_pred HHHHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcC-----CcHHHHHHHHHHHHHHHHHcchHHHHHHH
Confidence 899999999 4557666655555555 4667778888888877665 45677788888888888899999999998
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCcccc-------cccCCcC-hhHHH-----HHH-------HHH---hcchHhhhhh
Q 010647 165 VSLLVFSLCPFVVMGILSIPRIKPRRWLV-------VDFKKVD-WRGYF-----NSM-------FWN---LNYWDKASTL 221 (505)
Q Consensus 165 ~~~~~~~i~~~~~~~i~~~~~~~~~~~~~-------~~~~~~~-~~~~~-----~~~-------~~a---~~G~e~~~~~ 221 (505)
....-++-+..++..+..+.. +.++..+ ..+++.. ..++. ..+ .|+ =.|....++.
T Consensus 210 ~~vVPfMA~~Yi~~~~~Ii~~-n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap~aaA 288 (452)
T COG1115 210 SKVVPFMAILYVLVALVIIVL-NISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAPIAAA 288 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-hHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhcccccCCcchhHHH
Confidence 887766655444433322211 1111100 0111111 11111 111 122 1266667777
Q ss_pred hccccCcCcchhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcC-ccccHH-HHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q 010647 222 AGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSE-WSDGYF-AEVGMLIGGFWLKWWIQAASAMSNLGLFE 299 (505)
Q Consensus 222 ~~E~k~p~~~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (505)
+.+++||.|+--..+....+-..++=....+.++..-.++... .++..+ ...++...+++...++.+...+-.+++..
T Consensus 289 aA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G~~fv~i~l~lFafTTIl 368 (452)
T COG1115 289 AAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGSWGSYFVAIALFLFAFTTIL 368 (452)
T ss_pred hhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHH
Confidence 7788899775434333333322222222222322222222222 133344 34566777888999999999999999999
Q ss_pred HHhhhhhHHHHHHH
Q 010647 300 AEMSGDAFQLLGMS 313 (505)
Q Consensus 300 ~~~~~~sR~l~a~a 313 (505)
++.+-+-|.+.-+.
T Consensus 369 g~yyyge~~~~fl~ 382 (452)
T COG1115 369 GWYYYGEKNIEFLF 382 (452)
T ss_pred HHHHHHHHHHHHHh
Confidence 98888777765444
No 57
>PLN03074 auxin influx permease; Provisional
Probab=99.12 E-value=9.9e-08 Score=97.36 Aligned_cols=232 Identities=10% Similarity=-0.001 Sum_probs=122.3
Q ss_pred chhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHH----HHHHhhccCCCCCch--------hH
Q 010647 22 TVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEAL----ITAELATSFPENGGY--------VI 88 (505)
Q Consensus 22 ~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~----~~~el~s~~P~~Gg~--------y~ 88 (505)
+.++...-.+...+| |++++|..+.. +|....++..++.+++ +.-.+. ++-|...+.|..+-. +.
T Consensus 47 s~~~~~~~l~~~~vG~GILaLP~Af~~-~G~v~Gii~lv~~~~l-~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~e 124 (473)
T PLN03074 47 SVYDAWFSCASNQVAQVLLTLPYSFSQ-LGMLSGILFQIFYGLL-GSWTAYLISVLYVEYRARKEREKVDFKNHVIQWFE 124 (473)
T ss_pred hHHHHHHHHHHHHHhHHHHhHHHHHHH-ccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHHH
Confidence 334433336666678 78999999999 7765444555555543 222333 345677777774422 22
Q ss_pred hHHhhhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 010647 89 WISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLL 168 (505)
Q Consensus 89 ~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~ 168 (505)
-..+.+||.++.+......+........+....++.+..+.+..+......++..+.+.+.. .+..|....+..+..
T Consensus 125 ~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~~~~~~~~i~~~v~~~~~~---i~sl~~l~~~S~ig~ 201 (473)
T PLN03074 125 VLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVF---IPSFHNYRIWSFLGL 201 (473)
T ss_pred HHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCcCCCeEEeehHHHHHHHHH---ccCHHHHHHHHHHHH
Confidence 33446899988777555444444444444444444444333222222112222222222222 222343443333322
Q ss_pred HHHHHHHHHHHHHHhccccCCcccccccCCcChhHHHH---HHHHHhcchHhhhhhhccccCcCcchhHHHHHHHHHHHH
Q 010647 169 VFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWRGYFN---SMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVS 245 (505)
Q Consensus 169 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~~~ 245 (505)
...+...+.+.+......+...... ..+.++..++. .++|+|.|.-....+-.|+|||+ +.++....+......
T Consensus 202 ~~tl~~av~i~i~~i~~~~~~~~~~--~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~-~F~~~~~l~~~~v~~ 278 (473)
T PLN03074 202 LMTTYTAWYMTIAALSHGQVEGVKH--SGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KFKYIYLAATLYVLT 278 (473)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCC--CCchhHHHHHHHHHHHHHHhcccccHHHHHHhccChh-cccchHHHHHHHHHH
Confidence 2222211222222222222222211 11223333333 36899999999999999999995 588888888888888
Q ss_pred HHHHHHHHHhhccCCC
Q 010647 246 SYLIPLLAGTGGLTSL 261 (505)
Q Consensus 246 ~y~~~~~~~~~~~~~~ 261 (505)
+|+...+......+++
T Consensus 279 ~y~~~~~~gY~~fG~~ 294 (473)
T PLN03074 279 LTLPSAAAVYWAFGDE 294 (473)
T ss_pred HHHHHHHeeeeeechh
Confidence 8887766666655543
No 58
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=99.07 E-value=1e-06 Score=82.23 Aligned_cols=265 Identities=11% Similarity=0.006 Sum_probs=157.8
Q ss_pred HHHHHHhccCCcCchhhhhhcCchH--HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhhhCChhHHHHHHH
Q 010647 28 ALIFYEVSGGPFGVEDSVKAGGGPL--LSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFW 105 (505)
Q Consensus 28 ~~~~~~i~g~~~~~~~~~~~~~G~~--~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~ 105 (505)
+..+++++|+.|..+.-+.+-.|+- ...++.++.++++ ...+....++++++.. ...-.+.++.+||.++-+--..
T Consensus 10 f~~ig~~vGAGfAsGqEi~QFF~~~G~~s~~gIivs~vlf-~~~g~vim~ig~~f~a-~~y~~~~~~v~~~~~~ki~d~~ 87 (349)
T COG3949 10 FAFIGTVVGAGFASGQEIMQFFGKYGVYSILGIILSTVLF-TLSGAVIMTIGKKFNA-TSYREILKYVSGPKFAKIIDII 87 (349)
T ss_pred HHHHHHhhcccccchHHHHHHHHHhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHhcc-cchHHHHHHHhhHHHHHHHHHH
Confidence 3456688898898887765534432 3678888888864 4467778899998876 3566799999999999887766
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010647 106 KWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRG-LHIVGFSAVSLLVFSLCPFVVMGILSIP 184 (505)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g-~~~~~~~~~~~~~~~i~~~~~~~i~~~~ 184 (505)
..+.-.........+.++.+.+.+. .|.|+-+++++.....+..++ ++-.-+++.+.+-+.++.+.........
T Consensus 88 iif~lf~~~vVM~AGags~~~e~~~-----lP~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~LIi~l~~v~~~~~f 162 (349)
T COG3949 88 IIFFLFSTAVVMLAGAGSLLEEMFG-----LPYWIGALIIILLVLILLFLGRVEGIITVNGIITPFLIIILVLVTLSFQF 162 (349)
T ss_pred HHHHHHHHHHHHhccchhHHHHHhC-----ccHHHHHHHHHHHHHHHHHHhcccceeeeheeHHHHHHHHHHHHHHHHHH
Confidence 5555444444444444445555443 233444445555555555555 5555555555554443332222111111
Q ss_pred cccCCcccccccCCcChhHHHHHHHHH---hcchHhhhhhhccccCcCcchhHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 010647 185 RIKPRRWLVVDFKKVDWRGYFNSMFWN---LNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSL 261 (505)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~a---~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 261 (505)
..+.+.++.......+|...... ..+ .........+++|+|+ +|+..+|-+.+-++.+++..+.+.......+
T Consensus 163 ~~~~~~a~~~~~~~~~W~~~~~~-Y~alNi~~~~avLv~lg~~~~~-~~~~~~g~l~gglIlgvl~~l~nlsLi~~~~-- 238 (349)
T COG3949 163 TNLGNAAQIVLTKQGNWKASAVG-YGALNILVAVAVLVPLGGRMES-RKVSGIGGLIGGLILGVLLFLINLSLIALYD-- 238 (349)
T ss_pred hhccchhhhcCCcCCChHHHHHh-hhhHHHHhHhHhhhhhcccccc-cchhhhhhhhhhHHHHHHHHHHHHHHHhhcc--
Confidence 11111121111223355443322 111 2245566778899999 5777888888888888888888887776555
Q ss_pred CcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 010647 262 SSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSG 304 (505)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (505)
+..+.+-|..+++++.. +....++.........++..+.+++
T Consensus 239 ~v~~~dIP~l~i~~~~~-~~i~lvm~vIi~~~IytT~vg~iy~ 280 (349)
T COG3949 239 KVVNYDIPLLTIAKNFS-PLIGLVMSVIIWLEIYTTTVGLIYG 280 (349)
T ss_pred hhhccCCcHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556778888888876 4445555555555555555444433
No 59
>PTZ00206 amino acid transporter; Provisional
Probab=99.07 E-value=9.9e-08 Score=97.73 Aligned_cols=235 Identities=15% Similarity=0.103 Sum_probs=140.2
Q ss_pred hhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhhhCChhHHHH
Q 010647 24 LPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQE 102 (505)
Q Consensus 24 ~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~ 102 (505)
.+..+-.+.+++| |++++|....+ +|....++..++.+++ +......+.+.+.+ ++.-.+..-+++.+||...+++
T Consensus 63 ~~s~fnL~~~~iGaGILsLP~Af~~-~G~v~giillil~a~l-s~ys~~lL~~~~~~-~~~~sY~~la~~~~G~~g~~~v 139 (467)
T PTZ00206 63 AASAFNIASSTVGAGIVGLPSAANS-SGLVMAMIYLIIITAM-TIFSIYALGVAADK-TNIRTYEGVARVLLGPWGSYYV 139 (467)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH-hhHHHHHHHHHHHHHH-HHHHHHHHHHHhcc-CCCCCHHHHHHHHhCHHHHHHH
Confidence 4555556666788 78899999988 7765545555555543 43344445555554 3334566677788999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhchhhhh-hh------hHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHH
Q 010647 103 GFWKWLSGVLDNALYPVLFLDYLKHSLPIFNL-LI------ARIPALLGITGALTYL-NYRGLHIVGFSAVSLLVFSLCP 174 (505)
Q Consensus 103 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~i-~~~g~~~~~~~~~~~~~~~i~~ 174 (505)
.....+.....+.++....++.+...++..+. ++ .+..+.+..+.+...+ -.+..+...++..+.....+..
T Consensus 140 ~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~~~ 219 (467)
T PTZ00206 140 AATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMVYL 219 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988877653210 00 1111111111111111 2233344444433332222222
Q ss_pred HHHHHHHHhccccCCcccc-----cc------cC-CcChhHHHHHHHHHhcchHhhhhhhccccCcC-cchhHHHHHHHH
Q 010647 175 FVVMGILSIPRIKPRRWLV-----VD------FK-KVDWRGYFNSMFWNLNYWDKASTLAGEVENPS-KTFPKALLGAVV 241 (505)
Q Consensus 175 ~~~~~i~~~~~~~~~~~~~-----~~------~~-~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~-~~ip~ai~~~~~ 241 (505)
.+.+++.......+.+..+ .. ++ .......+...+|+|.+.-.....-+|+|||. |+..|.+..+..
T Consensus 220 vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~s~~ 299 (467)
T PTZ00206 220 VIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTIAMG 299 (467)
T ss_pred HhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHHHHHH
Confidence 2222222222211111110 00 00 01122334556899999999999999999864 678889999999
Q ss_pred HHHHHHHHHHHHHhhccCCC
Q 010647 242 LVVSSYLIPLLAGTGGLTSL 261 (505)
Q Consensus 242 ~~~~~y~~~~~~~~~~~~~~ 261 (505)
++.++|.+..+.-....+++
T Consensus 300 i~~~lY~~~G~~GYl~fG~~ 319 (467)
T PTZ00206 300 MCFTMYVLTAFFGYMDFGRN 319 (467)
T ss_pred HHHHHHHHHHHhhhhccccc
Confidence 99999999999888777654
No 60
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=99.05 E-value=4.4e-06 Score=82.76 Aligned_cols=152 Identities=9% Similarity=-0.033 Sum_probs=95.0
Q ss_pred HHHHHhhccCCCCCchhHhHHhhhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHH
Q 010647 71 LITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALT 150 (505)
Q Consensus 71 ~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (505)
..++++..+.... +..-.+..+|.+-+++.....++.+....+.+....++..... + +.+.....++.-.+.+
T Consensus 70 A~~s~~Ga~~Glp--qmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-~----~~~~~~~ili~g~l~~ 142 (442)
T COG1457 70 AYFSYQGARTGLP--QMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-T----GLPVWAGILIIGVLMT 142 (442)
T ss_pred HHHHHhccccCCC--hheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-C----CCcHHHHHHHHHHHHH
Confidence 3355665554442 4556667799999999999999988888888888887763322 2 3344455556666778
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCc--ccccccCCcChhHHHHHHH-HHhcchHhhhhhhccccC
Q 010647 151 YLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRR--WLVVDFKKVDWRGYFNSMF-WNLNYWDKASTLAGEVEN 227 (505)
Q Consensus 151 ~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~a~~G~e~~~~~~~E~k~ 227 (505)
...++|.|...+++++.....++..+......+...+..+ +......+.++...+..++ +..++--.++.++.-.|+
T Consensus 143 l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~ 222 (442)
T COG1457 143 LVTIFGYRALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALWVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPS 222 (442)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeeccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCC
Confidence 8889999999999999998888777766665544222111 2111222334444443322 223334455666666776
Q ss_pred cC
Q 010647 228 PS 229 (505)
Q Consensus 228 p~ 229 (505)
|+
T Consensus 223 ~t 224 (442)
T COG1457 223 PT 224 (442)
T ss_pred Cc
Confidence 55
No 61
>PRK11375 allantoin permease; Provisional
Probab=99.04 E-value=5e-06 Score=85.38 Aligned_cols=316 Identities=9% Similarity=0.020 Sum_probs=151.1
Q ss_pred cccccCCCccchhhHHHHHHHHhcc-CCcCc-hhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-chhH
Q 010647 12 QKAAKTSPKLTVLPLIALIFYEVSG-GPFGV-EDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENG-GYVI 88 (505)
Q Consensus 12 ~~~~~~~r~l~~~~~~~~~~~~i~g-~~~~~-~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~G-g~y~ 88 (505)
..-++.+|+.++++.+.+=++.... +.+.. ...+..+-+....+++.+++.++ .+..++-.+..=++.| +...
T Consensus 18 ~pvp~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~~GLs~~~ai~ai~lG~~i----~~~~~~l~g~~G~~~Gl~~~v 93 (484)
T PRK11375 18 LPKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFF----IAAVMVLNGAAGSKYGVPFAM 93 (484)
T ss_pred CcCCccccCCcHHHHHHHHHHHhccHHHHHHHHHHHHccchHHHHHHHHHHHHHH----HHHHHHHhcccccccCCChhH
Confidence 3334567889999998886655543 11111 12222212222344555554443 2333333333334433 3556
Q ss_pred hHHhhhCChhHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHh----chhhh----------hhhhHHHHHHHHHHHHHHHH
Q 010647 89 WISSAFGPFWGFQEGFWKW-LSGVLDNALYPVLFLDYLKHS----LPIFN----------LLIARIPALLGITGALTYLN 153 (505)
Q Consensus 89 ~~~~~~g~~~g~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~----------~~~~~~~~~~~~~~~~~~i~ 153 (505)
..+..||.+-+.+.+.... +..+...+.+....++.+... +|.+. .+....+..+++.++.+.+.
T Consensus 94 ~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~ 173 (484)
T PRK11375 94 ILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIG 173 (484)
T ss_pred hHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 7777899887777777763 455555666666666665543 32211 11223444455556677777
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccc---cccc-C-CcChhHHHHHH---HHHhc-chHhhhhhhcc
Q 010647 154 YRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWL---VVDF-K-KVDWRGYFNSM---FWNLN-YWDKASTLAGE 224 (505)
Q Consensus 154 ~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~---~~~~-~-~~~~~~~~~~~---~~a~~-G~e~~~~~~~E 224 (505)
+.|.|...+++.+...+.++..+.+.+..+...+.+... +... . ......+...+ +=++. +.-..+.+++.
T Consensus 174 ~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy 253 (484)
T PRK11375 174 FGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQN 253 (484)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhcc
Confidence 889999999888887776655554444333332222111 1100 0 00111122211 11222 33456677788
Q ss_pred ccCcCcchhHHHHHHHHHHHHHHHHHHHHHh-hccCCCCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH-HHh
Q 010647 225 VENPSKTFPKALLGAVVLVVSSYLIPLLAGT-GGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFE-AEM 302 (505)
Q Consensus 225 ~k~p~~~ip~ai~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 302 (505)
.|+++ +.-++...+..+...+..+..+... .... .-.....+|...+. +........+..+..+++..+... ...
T Consensus 254 ~k~~~-~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~-~~g~~~~dp~~i~~-~~~~~~~~~~a~l~~v~a~~~tN~~~N~ 330 (484)
T PRK11375 254 AHSFR-AQALGQTLGLVVAYILFAVASVCIIAGASI-HYGADTWNVLDIVQ-RWDSLFASFFAVLVILMTTISTNATGNI 330 (484)
T ss_pred cCChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCcCCHHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88864 4445656555555444322222221 1110 00111244543333 333333333334444445544432 344
Q ss_pred hhhhHHHHHHHhcCCChhhhhccCCCCCChHHHHHHHHHHHHHH
Q 010647 303 SGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLS 346 (505)
Q Consensus 303 ~~~sR~l~a~a~dg~lP~~~~~~~k~~~P~~ai~~~~~~~~~~~ 346 (505)
++++ +.-.+.+||+. +|+ ++.++..+++.++.
T Consensus 331 ys~~-----~~l~~l~pk~i---~~~----~~~~i~~iig~~~~ 362 (484)
T PRK11375 331 IPAG-----YQIAALAPTKL---TYK----NGVLIASIISLLIC 362 (484)
T ss_pred ccHH-----HHHHHhCcCcc---chh----hHHHHHHHHHHHhc
Confidence 4443 33346677543 322 35666656655544
No 62
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=98.95 E-value=2.4e-11 Score=123.28 Aligned_cols=352 Identities=15% Similarity=0.124 Sum_probs=195.0
Q ss_pred CccchhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---CCCchhHhHHhhh
Q 010647 19 PKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFP---ENGGYVIWISSAF 94 (505)
Q Consensus 19 r~l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P---~~Gg~y~~~~~~~ 94 (505)
||-|.++.+...+.+++| |.+++|....+ +|....++..++.+.+ +......+.+.....| +.-..-.-+++.+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~-~G~~~g~i~l~~~~~~-s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQ-SGWVLGIILLVLVALL-SYYTMYLLVRAANAMPNGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHH-hhhhhhhHHHHHHHHH-HHHhhhhhhccccccccccccccccccccccc
Confidence 466889999999999999 78999999998 7765555555555553 5666777777777765 3333344567889
Q ss_pred CChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhh--hhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 010647 95 GPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNL--LIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL 172 (505)
Q Consensus 95 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i 172 (505)
||+.++++.....+........+....++.+....+.... ......+.++...+...+... |....+........+
T Consensus 79 G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~--~~l~~l~~~s~~~~~ 156 (409)
T PF01490_consen 79 GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFL--KNLKSLRYLSILGLF 156 (409)
T ss_pred cccccccccchheeccccccceeEEEeeeeeeccccccccccccccccccccccccccccccc--chhhHHHHHhhhhhh
Confidence 9999999999988888888888888888888777765321 122222222222233333322 333332222221111
Q ss_pred HHHH--HHHHHHhccc---cCCcccccc-cCCc---ChhHHHHHHHHHhcchHhhhhhhccccCcCc--chhHHHHHHHH
Q 010647 173 CPFV--VMGILSIPRI---KPRRWLVVD-FKKV---DWRGYFNSMFWNLNYWDKASTLAGEVENPSK--TFPKALLGAVV 241 (505)
Q Consensus 173 ~~~~--~~~i~~~~~~---~~~~~~~~~-~~~~---~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~~--~ip~ai~~~~~ 241 (505)
..+. .+.+...... +..+..... .... ++...++...|+|.+......+.+|+|+|+| ++.|+...+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~ 236 (409)
T PF01490_consen 157 SIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMI 236 (409)
T ss_pred ccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhh
Confidence 1111 1111111111 111111111 1112 3344556678999999999999999999875 45699999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCcCccccHHHHHHHHhcch-HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcC----
Q 010647 242 LVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGF-WLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMG---- 316 (505)
Q Consensus 242 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg---- 316 (505)
+..++|.+..+......+++..+ .+..+.... +...+..++..+..+.+..-......+.+...-++.
T Consensus 237 ~~~~~y~~~g~~gy~~fg~~~~~-------~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~ 309 (409)
T PF01490_consen 237 ICFIIYLLFGIFGYLAFGDSVQG-------NILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASS 309 (409)
T ss_pred hhhHHhhhhhhcccceeeeeecc-------hhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheecccccc
Confidence 99999999998887766543211 222222222 233333344444444433333333444444333221
Q ss_pred -CChhhhhccCCCCCChHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhCCC
Q 010647 317 -MLPAIFASRSKYGTPTLSILCSATGVIFLSWMSFQEILEFLNF--LYAIGMLLEFAAFIKLRIKKPD 381 (505)
Q Consensus 317 -~lP~~~~~~~k~~~P~~ai~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~r~~~~~ 381 (505)
.-++.-.+.+..+.-.+..++.....+.....+++.+.++... ...++|+++.+.+++.++++++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~ 377 (409)
T PF01490_consen 310 RDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRN 377 (409)
T ss_pred ccccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhccccc
Confidence 1110000000011111222222222222223456666665533 4567888999988888776643
No 63
>PRK11017 codB cytosine permease; Provisional
Probab=98.84 E-value=0.00018 Score=72.49 Aligned_cols=216 Identities=13% Similarity=-0.004 Sum_probs=108.6
Q ss_pred CCccchhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-chhHhHHhhhC
Q 010647 18 SPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENG-GYVIWISSAFG 95 (505)
Q Consensus 18 ~r~l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~G-g~y~~~~~~~g 95 (505)
+|+ +.++.+..-++.... ..+...+.+..+-+....+++.+++.++..+ ..+-.+..=|+.| ......+..||
T Consensus 8 ~r~-~~~~~~~~~~g~~~~~~~~~~g~~l~~GLs~~~ai~aiilG~~i~~~----~~~l~~~~G~k~G~~~~v~sR~~FG 82 (404)
T PRK11017 8 ARK-GVLSLTMVMLGFTFFSASMWAGGTLGTGLSFVDFLLAVLIGNLLLGI----YTAALGYIGAKTGLSTHLLARFSFG 82 (404)
T ss_pred Hhc-chHhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH----HHHHHHHHHhccCcCHHHHHHHHhc
Confidence 345 777765554433322 1122222232312333345555555443222 2222223333333 24566777899
Q ss_pred ChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 010647 96 PFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPF 175 (505)
Q Consensus 96 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~ 175 (505)
.+-+.+.+....+..+...+.+....+..++...+. +. ....+++.++.......|.|...+++++......+.+
T Consensus 83 ~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~~-~~----~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~~~~~~ 157 (404)
T PRK11017 83 EKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATGL-DI----NLLIVLSGLLMTVTAYFGISALTILSRIAVPAIALLG 157 (404)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC-CH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888877777766777777766666554431 11 1133344455566778888888888888777665554
Q ss_pred HHHHHHHhcccc-CCccc-ccccCCcChhHHHHHHH-HHhcchHhhhhhhccccCcCcchhHHHHHHHHHHH
Q 010647 176 VVMGILSIPRIK-PRRWL-VVDFKKVDWRGYFNSMF-WNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVV 244 (505)
Q Consensus 176 ~~~~i~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~-~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~~ 244 (505)
+...+..+.+.+ .+... .....+..+...+...+ +..++.-..+.+++..|++++.. .+...+..+..
T Consensus 158 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~~-~~~~lg~~i~~ 228 (404)
T PRK11017 158 GYSVWLAVNDVGGLDGLKAIVPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKIAV-LATMVAFFLGN 228 (404)
T ss_pred HHHHHHHHhccCchhhhhcCCCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCcccee-ehhHHHHHHHH
Confidence 444333322221 11111 11111223333322211 22344556677888888765433 44444443333
No 64
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=98.84 E-value=3.6e-05 Score=76.43 Aligned_cols=331 Identities=11% Similarity=0.015 Sum_probs=185.1
Q ss_pred cc-CCcCchhhhhhcCch--HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhhhCChhHHHHHHHHH--HH
Q 010647 35 SG-GPFGVEDSVKAGGGP--LLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKW--LS 109 (505)
Q Consensus 35 ~g-~~~~~~~~~~~~~G~--~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~--~~ 109 (505)
-| |-.-.|..+...+|. ....+|+++.++.+-+....+.+ -..|+.+...+| .||..|.+...... ++
T Consensus 17 FGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~------~~~~~~~~l~~~-v~~~f~~if~~~i~l~IG 89 (427)
T PF05525_consen 17 FGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVA------KSGGGIEDLASR-VGPKFALIFTILIYLSIG 89 (427)
T ss_pred hCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHh------hcCCCHHHHhcc-cCcHHHHHHHHHHHHHHH
Confidence 45 444456655444553 34678888888742222222111 122355555554 46666655554332 23
Q ss_pred hhhhHHHHHHHHHH-HHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 010647 110 GVLDNALYPVLFLD-YLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKP 188 (505)
Q Consensus 110 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~ 188 (505)
-....+=.+...-| -+..++|. ++.+...+..+++..+..++.+..-|...++-.+++-+.++.++++++.++.+...
T Consensus 90 P~~aiPRtaa~sfe~~i~p~~~~-~~~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL~~l~ilii~~i~~p~g 168 (427)
T PF05525_consen 90 PLFAIPRTAAVSFEMGIAPFFPE-NSNISLLIFSIIFFAITYLLSLNPSKIVDRIGKFLTPILLILLAILIIKGIFSPIG 168 (427)
T ss_pred hcccCcchhhhhHHHhhhccCCc-ccccchhhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33333322222222 22333343 33456667777888888899999999999999999988888888888877765432
Q ss_pred Cccccccc-CCcCh-hH---------HHHHHHHHhcchHhhhhhhccccCc---CcchhHHHHHHHHHHHHHHHHHHHHH
Q 010647 189 RRWLVVDF-KKVDW-RG---------YFNSMFWNLNYWDKASTLAGEVENP---SKTFPKALLGAVVLVVSSYLIPLLAG 254 (505)
Q Consensus 189 ~~~~~~~~-~~~~~-~~---------~~~~~~~a~~G~e~~~~~~~E~k~p---~~~ip~ai~~~~~~~~~~y~~~~~~~ 254 (505)
+...+... ....+ .+ .+.++.| ...=..+--....+|+ .|..-|+-..+.....++|....+.-
T Consensus 169 ~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~F--g~iIi~~i~~~g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL~~lG 246 (427)
T PF05525_consen 169 PPQAPSGAYASNPFFKGFLEGYQTMDALAALAF--GIIIINAIRQKGYKDKKEIKKYTIKAGLIAGILLALIYGGLAYLG 246 (427)
T ss_pred CccccchhhhhhHHHHHHHHHHhhhhHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 22111100 00111 11 1222222 2222222222223332 23333444444445555566655553
Q ss_pred hhccCC-CCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhccCCCCCChH
Q 010647 255 TGGLTS-LSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTL 333 (505)
Q Consensus 255 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~k~~~P~~ 333 (505)
....+. .+..+....+..+.++..|+....++.+.+.++|+++..+.+.+.+...... .+ +.+|+
T Consensus 247 a~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~-------------~~-kisY~ 312 (427)
T PF05525_consen 247 ATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSEL-------------FP-KISYK 312 (427)
T ss_pred cCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hc-ccChH
Confidence 333332 2234445678899999999999999999999999999999888888765432 33 45555
Q ss_pred H-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhCCCCCCCcccc
Q 010647 334 S-ILCSATGVIFLSWMSFQEILEFLNFLYAIGMLLEF--AAFIKLRIKKPDLHRPYKVP 389 (505)
Q Consensus 334 a-i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~~~~~ 389 (505)
. +.+.++++.++...+++.+++++.-...+.|=... +.+-..++..++.+..||..
T Consensus 313 ~~v~i~~i~S~~ian~Gl~~Ii~~s~PiL~~iYP~~IvLIll~l~~~~~~~~~~~y~~~ 371 (427)
T PF05525_consen 313 VWVIIFTIFSFIIANLGLDQIIKISVPILMFIYPVAIVLILLNLFDKFIKNKKIVYRGT 371 (427)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCceeeee
Confidence 4 45566777777788899999998877776663322 22222333333334456653
No 65
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=98.48 E-value=0.00081 Score=66.97 Aligned_cols=327 Identities=11% Similarity=-0.008 Sum_probs=174.4
Q ss_pred cc-CCcCchhhhhhcCchH--HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhhhCChhHHHHHHHH--HHH
Q 010647 35 SG-GPFGVEDSVKAGGGPL--LSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWK--WLS 109 (505)
Q Consensus 35 ~g-~~~~~~~~~~~~~G~~--~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~--~~~ 109 (505)
-| |-.-.|..+...+|.. ...+++++.++.+-+... ++-.. ..|+.+...+|. ||..|.+..... .++
T Consensus 22 FGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgi-----iava~-~~g~~~~l~~rv-~~~f~~~f~~~i~l~IG 94 (439)
T PRK15433 22 VGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTV-----VALAK-VGGGVDSLSTPI-GKVAGVLLATVCYLAVG 94 (439)
T ss_pred hcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHH-----HHHhh-cCCCHHHHhhhc-chHHHHHHHHHHHHHHh
Confidence 45 4444555554445533 367888887764222211 12121 225666666655 666655443322 222
Q ss_pred hhhhHHHHHHHHHH-HHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 010647 110 GVLDNALYPVLFLD-YLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKP 188 (505)
Q Consensus 110 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~ 188 (505)
-....+=.+...-| -+..++|+ . +....+..+++..+..++.++.-|...++-++++-..++.++++++.++.+...
T Consensus 95 P~~aiPRtaavsfEm~i~p~~~~-~-~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~~l~~lii~~i~~p~g 172 (439)
T PRK15433 95 PLFATPRTATVSFEVGIAPLTGD-S-ALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVWPAG 172 (439)
T ss_pred hccccCCccccchhheeeccCCc-c-cHHHHHHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 22222211111112 12223332 1 234456777788888889999999999999998888888777777777765322
Q ss_pred Ccccc---cccCCc--C------hhHHHHHHHHHhcchHhhhhhhccccCcCcchhH----HHHHHHHHHHHHHHHHHHH
Q 010647 189 RRWLV---VDFKKV--D------WRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPK----ALLGAVVLVVSSYLIPLLA 253 (505)
Q Consensus 189 ~~~~~---~~~~~~--~------~~~~~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~----ai~~~~~~~~~~y~~~~~~ 253 (505)
....+ +..++. + ....++++.|+..=.++. -....+|+ |++.| +-+++.+...++|....+.
T Consensus 173 ~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~iii~~i--~~~G~~~~-~~~~k~t~~ag~ia~~~L~~vY~gL~~l 249 (439)
T PRK15433 173 SISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAA--RSRGVTEA-RLLTRYTVWAGLMAGVGLTLLYLALFRL 249 (439)
T ss_pred CCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111 000000 0 011222223332222222 23335553 33334 4444444555556666655
Q ss_pred HhhccCC-CCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhccCCCCCCh
Q 010647 254 GTGGLTS-LSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPT 332 (505)
Q Consensus 254 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~k~~~P~ 332 (505)
-....+. ++..+..........+..|+....++.+.+.++++++..+...+.++.+...- | .|+
T Consensus 250 Ga~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~-----~----------isY 314 (439)
T PRK15433 250 GSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYV-----P----------LSY 314 (439)
T ss_pred hcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----C----------CcH
Confidence 4433221 11223344566777888889999999999999999999998888887743321 1 333
Q ss_pred H-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhCCCCCCCccc
Q 010647 333 L-SILCSATGVIFLSWMSFQEILEFLNFLYAIGMLL--EFAAFIKLRIKKPDLHRPYKV 388 (505)
Q Consensus 333 ~-ai~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~r~~~~~~~~~~~~ 388 (505)
+ .+++.++++.++...+++.++.+..-...+.|=+ +.+.+-.+++..++.++.||.
T Consensus 315 ~~~v~i~~l~S~~lSn~G~~~II~~s~PiL~~iYP~~IvLill~l~~~~~~~~~~~y~~ 373 (439)
T PRK15433 315 RTLVFILGGFSMVVSNLGLSQLIQISVPVLTAIYPPCIALVVLSFTRSWWHNSSRVIAP 373 (439)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCceehH
Confidence 3 3456666677777788999888887666665532 222222334444443455665
No 66
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.43 E-value=0.0015 Score=66.83 Aligned_cols=235 Identities=7% Similarity=-0.060 Sum_probs=114.9
Q ss_pred ccCCCccchhhHHHHHHHHhcc-CCcCchhhhhh-cCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHh
Q 010647 15 AKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKA-GGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (505)
Q Consensus 15 ~~~~r~l~~~~~~~~~~~~i~g-~~~~~~~~~~~-~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~ 92 (505)
++.+|+.++++.+.+=++..+. ..+..+..... +-+....+++.+++.++..+ .....+..+.++-. ......+.
T Consensus 8 p~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~-~~~l~~~~G~r~Gl--~~~v~sR~ 84 (442)
T TIGR00800 8 KEEERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGI-FVALNSRAGAKYGL--PFPVLSRA 84 (442)
T ss_pred CcccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH-HHHHhhhhHHHhCC--Ccchhhhh
Confidence 3455667888888886655543 22222222222 01222345555555443122 22223333333332 35667788
Q ss_pred hhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhh----h-----hHHHHHHHHHHHHHH-HHHhhhHHHHH
Q 010647 93 AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLL----I-----ARIPALLGITGALTY-LNYRGLHIVGF 162 (505)
Q Consensus 93 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~-i~~~g~~~~~~ 162 (505)
.||.+-+.+.+...++..+...+.+....++.++..+....+. . ...+..+++..+... ....|.|...+
T Consensus 85 ~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~ 164 (442)
T TIGR00800 85 SFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIRHL 164 (442)
T ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 8999999999999888888888888888887776655432111 0 122222222222222 34555565555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCccc-ccc--cCCcChhHHHHHH----HHHhcchHhhhhhhccccCcCcchhHH
Q 010647 163 SAVSLLVFSLCPFVVMGILSIPRIKPRRWL-VVD--FKKVDWRGYFNSM----FWNLNYWDKASTLAGEVENPSKTFPKA 235 (505)
Q Consensus 163 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~----~~a~~G~e~~~~~~~E~k~p~~~ip~a 235 (505)
.+.......++.+++............+.. ... ..+.....++..+ -+..+..-.++.+++..|+++. ..++
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~~-~~~~ 243 (442)
T TIGR00800 165 FEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKKT-AIWG 243 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCccc-hHHH
Confidence 555554444444333332222111111111 110 1111222222221 1223345577788888888644 4455
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010647 236 LLGAVVLVVSSYLIPLLA 253 (505)
Q Consensus 236 i~~~~~~~~~~y~~~~~~ 253 (505)
...+.....+...+....
T Consensus 244 ~~~~~~~~~~~~~~~g~~ 261 (442)
T TIGR00800 244 QFLALPGGFTLTCFFGIL 261 (442)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555544444433333
No 67
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=98.39 E-value=0.0033 Score=62.85 Aligned_cols=314 Identities=10% Similarity=0.002 Sum_probs=152.1
Q ss_pred cccCCCccchhhHHHHHHHHhcc--CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc--hhHh
Q 010647 14 AAKTSPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGG--YVIW 89 (505)
Q Consensus 14 ~~~~~r~l~~~~~~~~~~~~i~g--~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg--~y~~ 89 (505)
..+.+|..+.++.+.+=.+.+.. ..+..+..+..+-++.-.+++.+++-++..+ ...+.++.-..-| .-.-
T Consensus 34 ~~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i-----~m~Lng~~G~~~gIpFpv~ 108 (497)
T COG1953 34 TPAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAI-----FMVLNGHAGSKYGIPFPVL 108 (497)
T ss_pred CccccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-----HHHhccCcccccCCCchHH
Confidence 34578999999999886655532 2222223333323443455555555543111 2223322211111 2234
Q ss_pred HHhhhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhc----hhh----------hhhhhHHHHHHHHHHHHHHHHHh
Q 010647 90 ISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSL----PIF----------NLLIARIPALLGITGALTYLNYR 155 (505)
Q Consensus 90 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----------~~~~~~~~~~~~~~~~~~~i~~~ 155 (505)
.+..||-..+-+-...-.+.-+.....+++..++.++.++ |.. +......+..+++..+...+-..
T Consensus 109 ~RaSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l~~~~ 188 (497)
T COG1953 109 SRASFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVLQLLVLFK 188 (497)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHHHHHHHhc
Confidence 5566776655555554444444455566666665555443 321 11344455555556666677778
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcc---cc-cccC-CcChhHHHHHHHHHhc----chHhhhhhhcccc
Q 010647 156 GLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRW---LV-VDFK-KVDWRGYFNSMFWNLN----YWDKASTLAGEVE 226 (505)
Q Consensus 156 g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~---~~-~~~~-~~~~~~~~~~~~~a~~----G~e~~~~~~~E~k 226 (505)
|.+...|++.+......+....+.+-...+.+.... .+ ...+ +..+..++..+..... ..-..+..+++.|
T Consensus 189 g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DFsRfa~ 268 (497)
T COG1953 189 GMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPDFTRFAK 268 (497)
T ss_pred CHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCchhhcccC
Confidence 999999999999888887777777766655443221 11 0111 1123333333322222 3345566777777
Q ss_pred CcCcchhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCccccHHHHHHHHhcchHHHH-HHHHHHHHHHHHHHH-HHhhh
Q 010647 227 NPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKW-WIQAASAMSNLGLFE-AEMSG 304 (505)
Q Consensus 227 ~p~~~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~ 304 (505)
+|+ +.-++-++++-+...++-++.+........-.-....+|. |+..+........ +..+..+++..++.. ++..+
T Consensus 269 s~~-~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~-di~~~~~~~~~~~fl~~l~~~iati~~Ni~aN~vs 346 (497)
T COG1953 269 SQK-AQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPL-DIVARFLSGFYAAFLAGLTFAVATISTNIAANIVS 346 (497)
T ss_pred Chh-hhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHH-HHHHHhccchHHHHHHHHHHHHHHHhhhHHhccCC
Confidence 753 3334444444443333333333222211111111122344 4555555443443 444444555444332 22222
Q ss_pred hhHHHHHHHhcCCChhhhhccCCCCCChHHHHHHHHHHHHHH
Q 010647 305 DAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLS 346 (505)
Q Consensus 305 ~sR~l~a~a~dg~lP~~~~~~~k~~~P~~ai~~~~~~~~~~~ 346 (505)
..-- -.+.+||.... | ++-++.++++++++
T Consensus 347 p~~D-----~s~l~Pk~in~--k-----rg~liaA~ial~~~ 376 (497)
T COG1953 347 PGYD-----LSALFPKYINI--K-----RGGLIAAIIALLIC 376 (497)
T ss_pred hHHH-----HHHhcccccch--h-----hhHHHHHHHHHHHc
Confidence 2211 12457765431 3 35566666666654
No 68
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=98.39 E-value=4.9e-05 Score=75.70 Aligned_cols=240 Identities=16% Similarity=0.090 Sum_probs=127.5
Q ss_pred CCccchhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhhhCC
Q 010647 18 SPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGP 96 (505)
Q Consensus 18 ~r~l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~ 96 (505)
+++-+.+..+.....+++| |++..|..... .|-...++.....++ ......+.+.+.++..++. ..-...++.+|+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~-~Giv~gi~li~~~a~-~s~~sl~~l~~~a~~~~~~-ty~~l~~~~~g~ 79 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKT-AGLLLGILLIVLSAF-LSLLSLYLLSKCAKKSGER-TYSSLGDLIFGK 79 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHH-hcHHHHHHHHHHHHH-HHHhHHHHHHHhhhhcCCC-CHHHHHHHHcCC
Confidence 4566788888888888899 78999999988 775544455555555 3666777788888888775 333455556665
Q ss_pred hhHHHHHHHHHHHhhhhHHHHHHHHH----HHHHHhc--hhhhhhh-hHHH-HHHHHHHHHHHHHHhhhHH-HHHHHHHH
Q 010647 97 FWGFQEGFWKWLSGVLDNALYPVLFL----DYLKHSL--PIFNLLI-ARIP-ALLGITGALTYLNYRGLHI-VGFSAVSL 167 (505)
Q Consensus 97 ~~g~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~-~~~~-~~~~~~~~~~~i~~~g~~~-~~~~~~~~ 167 (505)
..........-..... ..++....+ .+..... ++....| .+.. +.++.+.++..+.+.- +. .-+..+..
T Consensus 80 ~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k-~l~~Lk~tS~~ 157 (411)
T KOG1305|consen 80 LGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLK-NLDSLKYTSAL 157 (411)
T ss_pred CceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHH-hhhhHHHHHHH
Confidence 4422111111000000 000000111 1111111 0000000 1100 1222222223333322 21 11333444
Q ss_pred HHHHHHHHHHHHHHHhcccc---CC--cccccccCCcChhHHHHHHHHHhcchHhhhhhhccccCcC-cchhHHHHHHHH
Q 010647 168 LVFSLCPFVVMGILSIPRIK---PR--RWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPS-KTFPKALLGAVV 241 (505)
Q Consensus 168 ~~~~i~~~~~~~i~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~-~~ip~ai~~~~~ 241 (505)
+......++...+....... +. ...+......++...++..+++|.........-.|.|||+ |++-+....+..
T Consensus 158 s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~ 237 (411)
T KOG1305|consen 158 SLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAII 237 (411)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHH
Confidence 44433333333332222211 11 1111111112455666778899999999999999999986 678888888888
Q ss_pred HHHHHHHHHHHHHhhccCCCC
Q 010647 242 LVVSSYLIPLLAGTGGLTSLS 262 (505)
Q Consensus 242 ~~~~~y~~~~~~~~~~~~~~~ 262 (505)
.+..+|...........+++.
T Consensus 238 ~~~~iy~~~g~~GYL~Fg~~v 258 (411)
T KOG1305|consen 238 LATLIYLLTGLFGYLTFGDLV 258 (411)
T ss_pred HHHHHHHHHHHhhhheecccc
Confidence 889999988888777776544
No 69
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.35 E-value=0.0053 Score=63.46 Aligned_cols=283 Identities=10% Similarity=-0.051 Sum_probs=140.8
Q ss_pred CCCccchhhHHHHHHHHhccC--CcCchhhhhhcCchHHHHHHHHH--HHHHHHHHHHHHHHHhhccCCCCCchhHhHHh
Q 010647 17 TSPKLTVLPLIALIFYEVSGG--PFGVEDSVKAGGGPLLSLLGFLI--FPLIWSIPEALITAELATSFPENGGYVIWISS 92 (505)
Q Consensus 17 ~~r~l~~~~~~~~~~~~i~g~--~~~~~~~~~~~~G~~~~i~~~ii--~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~ 92 (505)
-.|+++++......+++..|+ ..+.+..... .|..+..+.+.. .+.+.....+.-+.++.++. +.-..+.|.++
T Consensus 38 agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~T~~e~l~~ 115 (471)
T TIGR02119 38 GGRSMGGFVLAMTLVATYGSASSFIGGPGIAYN-YGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKY-NAITINDVLKA 115 (471)
T ss_pred eCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHH
Confidence 468999999888888777773 4566666666 554332221111 11110111233344444544 33467889999
Q ss_pred hhCCh-hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 010647 93 AFGPF-WGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFS 171 (505)
Q Consensus 93 ~~g~~-~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~ 171 (505)
-+|++ ..++.+....+........+....+..++..++. +....++ +....+......-|.|.....+.+-..+.
T Consensus 116 Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi---~~~~~ii-i~~~iv~iYt~~GG~~av~~td~iQ~~v~ 191 (471)
T TIGR02119 116 RYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGL---SYLTALF-IFSSSVLIYTTFGGFRAVALTDAIQGIVM 191 (471)
T ss_pred HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 99954 5667776665555555566677777777666542 1111111 12222344445556666555444433333
Q ss_pred HHHHHHHHHHHhccc-c------------CCcccccccCCcCh-h-HHHHH----HHHHhcchHhhhhhhccccCcCcch
Q 010647 172 LCPFVVMGILSIPRI-K------------PRRWLVVDFKKVDW-R-GYFNS----MFWNLNYWDKASTLAGEVENPSKTF 232 (505)
Q Consensus 172 i~~~~~~~i~~~~~~-~------------~~~~~~~~~~~~~~-~-~~~~~----~~~a~~G~e~~~~~~~E~k~p~~~i 232 (505)
++..+++.+..+... + ++.+.+.. +.++ . ..... ..+...+.....+-.-..|| +|+.
T Consensus 192 ~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~p~~~~R~~aak~-~~~a 268 (471)
T TIGR02119 192 FTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFG--GDGGLTKPFVASFWILVGIGVIGLPQTAVRCMSYKD-SKAM 268 (471)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCC--CCcchhhhHHHHHHHHHHHHHhCchHHHHHHHhcCC-HHHH
Confidence 333222222222211 0 11111111 1111 1 11111 11222233333334444566 4778
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccC-CCCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 010647 233 PKALLGAVVLVVSSYLIPLLAGTGGLT-SLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQ 308 (505)
Q Consensus 233 p~ai~~~~~~~~~~y~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 308 (505)
.|+...+.+....+++...+.-..... ..+..+.+..+..+..+..+++...++....+.+..++..+.+.+.+-.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d~~~p~~~~~~lp~~~~gl~~a~llaA~mST~~s~l~~~ss~ 345 (471)
T TIGR02119 269 HRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPDKVIPLLAIKVLPPILAGIFLAAPMAAIMSTVNSLLLQSSST 345 (471)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888876666655444333222110 1122234556667767777777776666666666777776666665544
No 70
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.30 E-value=0.0054 Score=61.44 Aligned_cols=200 Identities=9% Similarity=-0.089 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhhhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhh
Q 010647 54 SLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFN 133 (505)
Q Consensus 54 ~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (505)
.+++.+++.++..++ ....+..+.++.. ......+..||++-+.+......+..+...+.+....++.++...+...
T Consensus 31 ai~aiilG~~i~~~~-~~l~~~~G~~~Gl--~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~ 107 (386)
T TIGR02358 31 GLLAILLGHLVGVLL-LSAAGVIGADTGL--SAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLF 107 (386)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHhhcccCc--CHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444432222 2223444443333 3667788889999999999999988888889999888888887764321
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccccccCCcChhHHHHHHH-HHh
Q 010647 134 LLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWRGYFNSMF-WNL 212 (505)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~ 212 (505)
+........+++.++.......|.|...+++++...+..+..+...+....+.+....... ..+.++........ +.-
T Consensus 108 ~~~~~~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~ 186 (386)
T TIGR02358 108 GEESPMLWILIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELWNR-AGDMSFAVAVELVIAMPL 186 (386)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcCC-CCCccHHHHHHHHHHHHH
Confidence 0001112223333456667778999999999988877766665554433333322211111 11123332222211 111
Q ss_pred cchHhhhhhhccccCcCcchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010647 213 NYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGL 258 (505)
Q Consensus 213 ~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~~~~y~~~~~~~~~~~ 258 (505)
.+.-..+.+++..|+|++ .-++...+..+...+..+.........
T Consensus 187 swa~~~~DysRy~k~~~~-~~~~~~~G~~i~~~~~~~~G~~~~~a~ 231 (386)
T TIGR02358 187 SWLPLIADYTRFARNPRH-VFLGTVLGYFIGSCWMYFLGLAVTLAT 231 (386)
T ss_pred HHHHHccchhhhcCCCcc-eehHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 223347788888887644 446666666665555555544444333
No 71
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=98.30 E-value=0.0044 Score=60.34 Aligned_cols=339 Identities=11% Similarity=0.056 Sum_probs=172.0
Q ss_pred hhhHHHHHHHHhcc-CCcCchhhhhhcCc--hHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhhhCChhH
Q 010647 23 VLPLIALIFYEVSG-GPFGVEDSVKAGGG--PLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWG 99 (505)
Q Consensus 23 ~~~~~~~~~~~i~g-~~~~~~~~~~~~~G--~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g 99 (505)
.+.+-++.++.-.| |-.-.|+.+...+| .....+|+++.++. ++..- +-.. -.+||.|.=..+..||..|
T Consensus 7 ~~~~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVg--lPlLg----iIa~-a~~g~~~~~l~~~i~~~fg 79 (431)
T COG1114 7 IIALGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVG--LPLLG----IIAV-ALYGGGVESLATRIGPWFG 79 (431)
T ss_pred HHHHHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhh--HHHHH----HHHh-hccCCCHHHHhhhccchHH
Confidence 33344444444456 43444554433344 33467888887763 22221 1111 1234434433444577766
Q ss_pred HHHHHHHH--HHhhhhHHHHHHHHHHHH-HHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 010647 100 FQEGFWKW--LSGVLDNALYPVLFLDYL-KHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFV 176 (505)
Q Consensus 100 ~~~g~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~ 176 (505)
.+-.-... ++-....+=.+...-+.. .-+.++. +.....+..++...+..++.+..-|...|+-.+++-+.++.++
T Consensus 80 ~~f~~~iyLsIGPffAiPRt~~vsfe~~i~p~~~~~-~~~~l~ifs~ifF~ia~~~sl~psklid~vGk~LTPilLv~l~ 158 (431)
T COG1114 80 VLFAIAIYLSIGPFFAIPRTGAVSFEVGISPLLGDS-SLPSLFIFSVIFFAIAYLFSLNPSKLIDRVGKFLTPILLVLLL 158 (431)
T ss_pred HHHHHHHHHHhcccccCCcccchhHHHhhhcccCCC-cchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHHHHHHH
Confidence 55443322 222222221111111111 1111211 2334556666777788889999999999999999988888877
Q ss_pred HHHHHHhccccCCcccccc-cCCcChh----------HHHHHHHHHhcchHhhhhhhccccCcCcchhHHHHHHHHHHH-
Q 010647 177 VMGILSIPRIKPRRWLVVD-FKKVDWR----------GYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVV- 244 (505)
Q Consensus 177 ~~~i~~~~~~~~~~~~~~~-~~~~~~~----------~~~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~~- 244 (505)
++.+..+.+.+..-..+.+ -.+..+. ..+++ .+|...-.-+-=..-.++++ +..|-.+.+-++.+
T Consensus 159 il~i~~~~~p~g~~~~a~~~y~~~pf~~GfleGY~TMDaLAa--l~FgivIv~alk~~g~~~~~-~~~~~~~~aglIa~i 235 (431)
T COG1114 159 ILVIAAIIPPAGPISAASGAYQSQPFSKGFLEGYLTMDALAA--LAFGIVIVNALKSKGVTTKK-QIIKYTIKAGLIAAI 235 (431)
T ss_pred HHHHHHHhCCCCCcccccHHHHhChHHHHHhcchHHHHHHHH--HHHHHHHHHHHHHhccCcHH-HHHHHHHHHHHHHHH
Confidence 7777765543322111100 0011111 12222 33333332222222333332 33344433333333
Q ss_pred ---HHHHHHHHHHhhccCCC---CcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCC
Q 010647 245 ---SSYLIPLLAGTGGLTSL---SSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGML 318 (505)
Q Consensus 245 ---~~y~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~l 318 (505)
.+|....+. +..... +.++....+.+..++.+|+....++...+.++|..+..+.+.+.+..... ..
T Consensus 236 ~La~iY~~L~yl--Ga~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~-----~~ 308 (431)
T COG1114 236 LLALIYLSLFYL--GATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSK-----LV 308 (431)
T ss_pred HHHHHHHHHHHh--ccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hc
Confidence 233333222 222221 13334557788888899998999999999999999988888777755322 22
Q ss_pred hhhhhccCCCCCChH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhCCCCCCCccc
Q 010647 319 PAIFASRSKYGTPTL-SILCSATGVIFLSWMSFQEILEFLNFLYAIGMLL--EFAAFIKLRIKKPDLHRPYKV 388 (505)
Q Consensus 319 P~~~~~~~k~~~P~~-ai~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~r~~~~~~~~~~~~ 388 (505)
| |++ |. ...+..+++.++...+++.++.++.-...+.|=+ ..+.....++..+..++.|+.
T Consensus 309 p----~~S-----Y~~~v~if~i~sflvan~GL~~Ii~isvPvL~~iYPiaI~Lv~l~~~~k~~~~~~~~y~~ 372 (431)
T COG1114 309 P----KLS-----YKTWVIIFTLISFLVANLGLEQIIKISVPVLTAIYPIAIALVLLSFARKLWKNSKRVYRL 372 (431)
T ss_pred c----ccc-----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCcchhHHH
Confidence 3 222 22 2344555666666778899888887766666633 333333445555444555554
No 72
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.30 E-value=0.0029 Score=64.06 Aligned_cols=279 Identities=13% Similarity=0.057 Sum_probs=140.9
Q ss_pred CCccchhhHHHHHHHHhccC--CcCchhhhhhcCchHH--HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhh
Q 010647 18 SPKLTVLPLIALIFYEVSGG--PFGVEDSVKAGGGPLL--SLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSA 93 (505)
Q Consensus 18 ~r~l~~~~~~~~~~~~i~g~--~~~~~~~~~~~~G~~~--~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~ 93 (505)
.|+++++......+++..++ ..+.+..... .|... ..+++.+. .+..+..+.+.-++.+ .-..+.|.++-
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~-~G~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~T~~e~l~~R 75 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYA-YGFAIGFYELGALVL----LIILGWLFVPIFINNG-AYTMPEYLEKR 75 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHH-HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcC-CCchhHHHHHH
Confidence 48889988888877777773 4567766666 45322 22222222 2334555666655544 34678899999
Q ss_pred hCC-hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 010647 94 FGP-FWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL 172 (505)
Q Consensus 94 ~g~-~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i 172 (505)
+|+ ....+.+....+......+.+....+..++..++. + .+...+ +...++......-|.|.......+=..+.+
T Consensus 76 yg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi-~-~~~~~i--i~~~i~~~Yt~~GG~~av~~Td~iQ~~i~~ 151 (407)
T TIGR00813 76 FGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITGL-D-LYLSLL--LLGAITILYTVFGGLKAVVWTDTIQAVIMI 151 (407)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-h-HHHHHH--HHHHHHHHHHHHcchHHHHHHHHHHHHHHH
Confidence 998 56677777777777778888888888888877652 1 112112 222233344445566654443333333333
Q ss_pred HHHHHHHHHHhccc-------------cC-----CcccccccCC----cChhHHH---HHH-HHHhcchHhhhhhhcccc
Q 010647 173 CPFVVMGILSIPRI-------------KP-----RRWLVVDFKK----VDWRGYF---NSM-FWNLNYWDKASTLAGEVE 226 (505)
Q Consensus 173 ~~~~~~~i~~~~~~-------------~~-----~~~~~~~~~~----~~~~~~~---~~~-~~a~~G~e~~~~~~~E~k 226 (505)
+..+++.+..+.+. ++ .+......++ ..|.-.. +.. .+.+... ...+-.=-.|
T Consensus 152 ~~~i~~~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~qR~~a~k 230 (407)
T TIGR00813 152 LGTFILPVFAFSEVGGLGTFVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALWYWTNQ-VIVQRCLAAK 230 (407)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcCCCccchhhhccCCCCCcccCCChHHHHhChHHHHHHHhcCH-HHhhHHHhcC
Confidence 22222222211111 01 0000000000 1111110 000 0111000 0111222245
Q ss_pred CcCcchhHHHHHHHHHHHHHHHHHHHHHh---hccCC--CCc-----CccccHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 010647 227 NPSKTFPKALLGAVVLVVSSYLIPLLAGT---GGLTS--LSS-----EWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLG 296 (505)
Q Consensus 227 ~p~~~ip~ai~~~~~~~~~~y~~~~~~~~---~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (505)
| +|+..|+...+.....+++.+..+.-. ...+. .+. .+.+..+..+..+..+++...++....+.+..+
T Consensus 231 s-~~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~~l~gl~~agilaA~mS 309 (407)
T TIGR00813 231 S-AKHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPPGLAGLFLAAILAAVMS 309 (407)
T ss_pred C-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence 5 477888888887665555443332222 11221 111 234556777788888887777766666666666
Q ss_pred HHHHHhhhhhHH
Q 010647 297 LFEAEMSGDAFQ 308 (505)
Q Consensus 297 ~~~~~~~~~sR~ 308 (505)
+..+.+.+.+-.
T Consensus 310 T~~s~l~a~ss~ 321 (407)
T TIGR00813 310 TLSSQLNSASTV 321 (407)
T ss_pred hhhhhHHHHHHH
Confidence 666666555544
No 73
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.28 E-value=0.0083 Score=62.43 Aligned_cols=143 Identities=13% Similarity=0.008 Sum_probs=72.5
Q ss_pred CCCccchhhHHHHHHHHhccC--CcCchhhhhhcCchHHH--HHHHHHHHHHHHHHHHHHHH-H---hhccCCCCCchhH
Q 010647 17 TSPKLTVLPLIALIFYEVSGG--PFGVEDSVKAGGGPLLS--LLGFLIFPLIWSIPEALITA-E---LATSFPENGGYVI 88 (505)
Q Consensus 17 ~~r~l~~~~~~~~~~~~i~g~--~~~~~~~~~~~~G~~~~--i~~~ii~~~~~~~~~a~~~~-e---l~s~~P~~Gg~y~ 88 (505)
-.|+++.|.......++.+++ ..+.++..+. .|.... .+++.++.+ .....++ . -..+.+..-..+.
T Consensus 38 agr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~-~G~~~~~~~~~~~~~~~----l~~~~~~~~l~~~~~~~~~~~T~~e 112 (502)
T PRK15419 38 GGRSLGPFVTALSAGASDMSGWLLMGLPGAVFL-SGISESWIAIGLTLGAW----INWKLVAGRLRVHTEYNNNALTLPD 112 (502)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHH-cCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCceeHHH
Confidence 479999999888777777663 4566776666 565331 112111111 1111111 1 1112233345778
Q ss_pred hHHhhhCC---hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHH---H
Q 010647 89 WISSAFGP---FWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVG---F 162 (505)
Q Consensus 89 ~~~~~~g~---~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~---~ 162 (505)
|.++-+|+ ....+.+....+......+.+....+..++..++. +.... +.+....+......-|.|... .
T Consensus 113 ~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~gi---~~~~~-iii~~~iv~iYt~~GGl~aV~~TD~ 188 (502)
T PRK15419 113 YFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGM---SYETA-LWAGAAATILYTFIGGFLAVSWTDT 188 (502)
T ss_pred HHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CHHHH-HHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 88888885 34445555555555555566666666666665542 11111 112223334444455666544 4
Q ss_pred HHHHHH
Q 010647 163 SAVSLL 168 (505)
Q Consensus 163 ~~~~~~ 168 (505)
+|.+..
T Consensus 189 iQ~~im 194 (502)
T PRK15419 189 VQASLM 194 (502)
T ss_pred HHHHHH
Confidence 554433
No 74
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=98.17 E-value=0.0098 Score=58.84 Aligned_cols=223 Identities=17% Similarity=0.119 Sum_probs=118.6
Q ss_pred hhHHHHHHHHhcc-C-CcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCCCCchhHhHHhhhCChhH
Q 010647 24 LPLIALIFYEVSG-G-PFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELAT--SFPENGGYVIWISSAFGPFWG 99 (505)
Q Consensus 24 ~~~~~~~~~~i~g-~-~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s--~~P~~Gg~y~~~~~~~g~~~g 99 (505)
...+.-++|+-+| | +.-.|+.....+|. ..++-+++..+...++. ...|++- +... +..-.|- +..+++..
T Consensus 12 lGFILAa~GsAVGLGNiWrFPy~~~~nGGg-AFll~yli~~l~~GiPl--li~Ef~iGr~~~~-~~~~a~~-~l~~~~~~ 86 (439)
T COG0733 12 LGFILAAAGSAVGLGNIWRFPYMAGENGGG-AFLLPYLIFLLLVGIPL--LLAEFAIGRRGRK-NAVGAFR-KLAPKKKW 86 (439)
T ss_pred HHHHHHHHHHHhcccccccCCeEeeecCcc-hHHHHHHHHHHHHhHHH--HHHHHHhhhhcCC-ChhHHHH-HhccCccc
Confidence 3344446777777 3 56778777664554 56677777776545544 4466653 3222 1222222 12112333
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhc------------------hhh-hhhhhHHHHHHHHHHHHHHHHHhhhHH-
Q 010647 100 FQEGFWKWLSGVLDNALYPVLFLDYLKHSL------------------PIF-NLLIARIPALLGITGALTYLNYRGLHI- 159 (505)
Q Consensus 100 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~-~~~~~~~~~~~~~~~~~~~i~~~g~~~- 159 (505)
-..||.-........+.+....+-.+.+.. .+. .+++......++++.+...+..+|++.
T Consensus 87 ~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV~~G 166 (439)
T COG0733 87 EWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGVKKG 166 (439)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 334444333333333333333333332221 111 123334445556666677788888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCC-----ccccc--cc-CCcChhHHHHHHHHHhc-chHhhhhhhccccCcCc
Q 010647 160 VGFSAVSLLVFSLCPFVVMGILSIPRIKPR-----RWLVV--DF-KKVDWRGYFNSMFWNLN-YWDKASTLAGEVENPSK 230 (505)
Q Consensus 160 ~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~-----~~~~~--~~-~~~~~~~~~~~~~~a~~-G~e~~~~~~~E~k~p~~ 230 (505)
.-|.+.++.-...+.++++.+-.+...+.. -+.|. .. ++..|...+...+|+.+ |+.....++.-.++ +.
T Consensus 167 IEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k-~~ 245 (439)
T COG0733 167 IEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSK-KS 245 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCc-cc
Confidence 668888777666655555555444321110 01111 01 13355566666778766 88888888888877 78
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 010647 231 TFPKALLGAVVLVVSSYLIPLL 252 (505)
Q Consensus 231 ~ip~ai~~~~~~~~~~y~~~~~ 252 (505)
|+++.-......-..+-++..+
T Consensus 246 ~l~~sa~~v~~~n~~~s~lAGl 267 (439)
T COG0733 246 DLVSSALSIVLLNTLISLLAGL 267 (439)
T ss_pred chhhhHHHHHHHHHHHHHHHHH
Confidence 8888777666655544444333
No 75
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.04 E-value=0.024 Score=58.77 Aligned_cols=282 Identities=10% Similarity=-0.049 Sum_probs=139.0
Q ss_pred CCCccchhhHHHHHHHHhccC--CcCchhhhhhcCchHHHHHHHH--HHHHHHHHHHHHHHHHhhccCCCCCchhHhHHh
Q 010647 17 TSPKLTVLPLIALIFYEVSGG--PFGVEDSVKAGGGPLLSLLGFL--IFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (505)
Q Consensus 17 ~~r~l~~~~~~~~~~~~i~g~--~~~~~~~~~~~~G~~~~i~~~i--i~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~ 92 (505)
-.|++++|-..+..+++..++ ..+.++.... .|..+..++.. ....+.....+.-+.++.++.. .-..+.|.++
T Consensus 39 agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~T~~e~l~~ 116 (483)
T PRK09442 39 GNRSMGGFVLAMTLIATYISASSFIGGPGAAYK-YGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYN-AVTLNDMLRA 116 (483)
T ss_pred eCCCccHHHHHHHHHHHHhhHhHHhCChhHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CccHHHHHHH
Confidence 478999888887777777663 4566666666 55433222111 1111111123344555556543 3467888888
Q ss_pred hhCCh-hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 010647 93 AFGPF-WGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFS 171 (505)
Q Consensus 93 ~~g~~-~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~ 171 (505)
.+|++ ..++.+....+......+.+....+..++..++. + .+...++ ..+.+......-|.|.......+-..+.
T Consensus 117 Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi-~-~~~~iii--~~~iv~iYt~~GGl~av~~TD~iQ~~i~ 192 (483)
T PRK09442 117 RYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATGI-S-YETGLLI--FGITVALYTAFGGFRAVVLTDALQGIVM 192 (483)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C-HHHHHHH--HHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 88855 5667776666666666777777887777776542 1 1111111 2222334444556665544433333333
Q ss_pred HHHHHHHHHHHhccc-------------cCCcccccccCC-cChhHHHHH---HHHHhcchHhhhhhhccccCcCcchhH
Q 010647 172 LCPFVVMGILSIPRI-------------KPRRWLVVDFKK-VDWRGYFNS---MFWNLNYWDKASTLAGEVENPSKTFPK 234 (505)
Q Consensus 172 i~~~~~~~i~~~~~~-------------~~~~~~~~~~~~-~~~~~~~~~---~~~a~~G~e~~~~~~~E~k~p~~~ip~ 234 (505)
++..+++.+..+... +++.+.+....+ .++...... ..+...+.....+-.=..||+ |+..|
T Consensus 193 ~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~aaks~-~~a~~ 271 (483)
T PRK09442 193 LVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGLPHTAVRCMSYKDS-KALHR 271 (483)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCCCHHHHHHHHcCCH-HHHHH
Confidence 332222222111110 111111111110 112111111 111222332222223335664 66778
Q ss_pred HHHHHHHHHHHHHHHHHHHH---hhccCCCCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 010647 235 ALLGAVVLVVSSYLIPLLAG---TGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAF 307 (505)
Q Consensus 235 ai~~~~~~~~~~y~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR 307 (505)
+..++.+....+++...+.- ....|+ ....+..+..+..+..+++...++...++.+..++..+.+.+.+=
T Consensus 272 ~~~~~~~~~~~~~~~~~~~G~~~~~~~p~--~~~~~~~~p~l~~~~lp~~l~gl~~a~~~aA~mST~~s~l~~~ss 345 (483)
T PRK09442 272 GIIIGTIVVGFLMFGMHLAGALGRAVLPD--LTVPDKVIPTLMLKVLPPFAAGIFLAAPMAAIMSTVDSQLLQSSS 345 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCccchHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877766555554443332 111233 222345566677777888777776666666677666666655543
No 76
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.03 E-value=0.026 Score=58.58 Aligned_cols=284 Identities=12% Similarity=0.072 Sum_probs=127.8
Q ss_pred CCCccchhhHHHHHHHHhccC--CcCchhhhhhcCchHHH--HHHHHHHHHHHHHHHHHHHHHhhccCC----CCCchhH
Q 010647 17 TSPKLTVLPLIALIFYEVSGG--PFGVEDSVKAGGGPLLS--LLGFLIFPLIWSIPEALITAELATSFP----ENGGYVI 88 (505)
Q Consensus 17 ~~r~l~~~~~~~~~~~~i~g~--~~~~~~~~~~~~G~~~~--i~~~ii~~~~~~~~~a~~~~el~s~~P----~~Gg~y~ 88 (505)
-.|+++++-......++..++ ..+.++.... .|.... .+++.+.. +...+-+++--+++. +.-..+.
T Consensus 34 agr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~-~G~~~~~~~~g~~~~~----~~~~~~~~~~~r~~~~~~~~~~T~~e 108 (487)
T TIGR02121 34 GGRSLGPFVTALSAGASDMSGWLLMGLPGALYV-TGLSELWIAIGLTIGA----YINWKFVAPRLRVYTEAAHNSITLPD 108 (487)
T ss_pred eCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHH-hhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHhhcCCccHHH
Confidence 368999888776665555553 3466666666 554332 12222211 212333333333222 2334788
Q ss_pred hHHhhhCCh---hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHH---H
Q 010647 89 WISSAFGPF---WGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVG---F 162 (505)
Q Consensus 89 ~~~~~~g~~---~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~---~ 162 (505)
|.++-+|+. ...+.+....+......+......+..++..++. + .+...+ +...+.......-|.|... .
T Consensus 109 ~l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi-~-~~~~ii--i~~~i~~~Yt~~GGl~av~~TD~ 184 (487)
T TIGR02121 109 FFENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGL-D-YKTGLL--IGALIIVIYTFFGGFLAVSWTDF 184 (487)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-c-HHHHHH--HHHHHHHHHHHhhhHHHHHHHHH
Confidence 999999843 4444444444444445566666666666666541 1 111111 2223344445555666544 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc---c-------ccCCcccccccCCcChhHHHHHHHHHh--cchHhhhhhhccccCcCc
Q 010647 163 SAVSLLVFSLCPFVVMGILSIP---R-------IKPRRWLVVDFKKVDWRGYFNSMFWNL--NYWDKASTLAGEVENPSK 230 (505)
Q Consensus 163 ~~~~~~~~~i~~~~~~~i~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~~~~a~--~G~e~~~~~~~E~k~p~~ 230 (505)
+|.+...+..+.+......... . .+++.+.. ..+..+........|.+ .|.....+-.=-.|| .|
T Consensus 185 iQ~~i~~~~~~~v~~~~~~~~GG~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~aaks-~k 261 (487)
T TIGR02121 185 VQGLLMFFALVLVPIVALFNLGGFGETLSAVAAINPHLLDM--FKGASVIAIISLLAWGLGYFGQPHIIVRFMAIRS-HK 261 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCccccCC--CCCCCHHHHHHHHHHHHHhccchHHHHHHHhcCC-HH
Confidence 4544333322222111111100 0 01111111 11222332222222322 222222211122455 36
Q ss_pred chhHHHHHHHHHHHHHHHHHHH----HHhh--ccCCCCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 010647 231 TFPKALLGAVVLVVSSYLIPLL----AGTG--GLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSG 304 (505)
Q Consensus 231 ~ip~ai~~~~~~~~~~y~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (505)
+..|+...+.....+..+...+ .... ..|.....+.+..+..+.++..+++...++....+.+..++..+.+++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~p~~~~~~~d~~~~~~~~~~~p~~l~gl~~a~ilaA~mST~~s~l~s 341 (487)
T TIGR02121 262 ELPKARRIGMSWMILSLLGAIAVGLTGIAYFNKNPHVELVDRETIFIVLSQILFHPWIAGILLAAILAAIMSTISSQLLV 341 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778877665433222211111 1111 112111223344566677777777776666666666677777777766
Q ss_pred hhHHHHHHHhc
Q 010647 305 DAFQLLGMSEM 315 (505)
Q Consensus 305 ~sR~l~a~a~d 315 (505)
.+-. .+||
T Consensus 342 ~ss~---~~~D 349 (487)
T TIGR02121 342 SSSA---LTED 349 (487)
T ss_pred HHHH---HHHH
Confidence 6644 3555
No 77
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.03 E-value=0.025 Score=58.50 Aligned_cols=287 Identities=11% Similarity=-0.034 Sum_probs=147.7
Q ss_pred cCCCccchhhHHHHHHHH-hcc-C-CcCchhhhhhcCchHHHHHHHH--HHHHHHHHHHHHHHHHhhccCCCCCchhHhH
Q 010647 16 KTSPKLTVLPLIALIFYE-VSG-G-PFGVEDSVKAGGGPLLSLLGFL--IFPLIWSIPEALITAELATSFPENGGYVIWI 90 (505)
Q Consensus 16 ~~~r~l~~~~~~~~~~~~-i~g-~-~~~~~~~~~~~~G~~~~i~~~i--i~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~ 90 (505)
.-.|+++.+ ..+++.+. ..+ + .++.++.... .|.....+..- +...+.....+--..+++ +-++.-..++|.
T Consensus 35 ~~gR~lg~~-v~~ls~~as~~s~~t~lG~~g~ay~-~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l 111 (493)
T COG0591 35 LGGRSLGPF-VYALSAAASDTSGWTFLGLPGLAYA-SGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFL 111 (493)
T ss_pred ccCCcCChH-HHHHHHHHHHHHHHHHhcchHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHH
Confidence 357999999 55554433 344 2 4578887777 56543222222 233223444566666777 555566789999
Q ss_pred HhhhC-ChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 010647 91 SSAFG-PFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLV 169 (505)
Q Consensus 91 ~~~~g-~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~ 169 (505)
++-|| +....+.+....+......+.+..+.+..++..++ .+........+.++..-...--.+++-++..+|-....
T Consensus 112 ~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~iqg~im~ 190 (493)
T COG0591 112 EARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-ISYVTGILIGALIVALYTFLGGLRAVVWTDFIQGLIML 190 (493)
T ss_pred HHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 99999 88899999988889999999999999988876665 32222222333333333334444555566667766555
Q ss_pred HHHHHHHHHHHHH---hccc----cCCc--ccccccC-CcChhHHHHHH------HHHhcchHhhhhhhccccCcCcchh
Q 010647 170 FSLCPFVVMGILS---IPRI----KPRR--WLVVDFK-KVDWRGYFNSM------FWNLNYWDKASTLAGEVENPSKTFP 233 (505)
Q Consensus 170 ~~i~~~~~~~i~~---~~~~----~~~~--~~~~~~~-~~~~~~~~~~~------~~a~~G~e~~~~~~~E~k~p~~~ip 233 (505)
+.+..+.+..... +... +..+ +.....+ +..+....... ...+.......+.-. .|++ |+.|
T Consensus 191 i~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~r~~~-~~~~-~~~~ 268 (493)
T COG0591 191 IALIVIPILVLILFGGFGELFAVLASLAPLFLTHPFDGALSPIYIISLIAWGTLFLGYFGQPHILPRFMA-AKSI-KSLP 268 (493)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHhcccccccCcccccchHHHHHHHHHHHHHHhhhhcCchhhhhhhh-hccH-hhhH
Confidence 5444333332221 1100 0000 0000111 11222221111 222333344444433 4444 3334
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HhhccCC-C---CcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 010647 234 KALLGAVVLVVSSYLIPLLA-----GTGGLTS-L---SSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSG 304 (505)
Q Consensus 234 ~ai~~~~~~~~~~y~~~~~~-----~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (505)
|..........+..++..++ .....+. + ...+.+..+..+.....+++..-++...++.+..++..+....
T Consensus 269 ~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~g~~~~ailaAvmSt~ss~ll~ 348 (493)
T COG0591 269 KSARLAGILWPLYCLLGAFLLGLLGIAYFPLLPDLSVPLLNPELVFPYLILALFPPWIAGLLLAAILAAVMSTASSQLLV 348 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333322222222111 1111111 1 1234455778888888888887776666666655555555554
Q ss_pred hhHH
Q 010647 305 DAFQ 308 (505)
Q Consensus 305 ~sR~ 308 (505)
.+-.
T Consensus 349 ~ss~ 352 (493)
T COG0591 349 ASSA 352 (493)
T ss_pred hhHH
Confidence 4433
No 78
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=97.96 E-value=0.0056 Score=60.75 Aligned_cols=240 Identities=11% Similarity=-0.032 Sum_probs=111.1
Q ss_pred HHHHHHHhhccCCCC--CchhHhHHhhhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHH
Q 010647 69 EALITAELATSFPEN--GGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGIT 146 (505)
Q Consensus 69 ~a~~~~el~s~~P~~--Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (505)
..+.+-|++.|+-.. -+...-.++.+||.+++.......+...........+.+.-++.+++ .+.....++..
T Consensus 25 ~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g-----~~~~~~~~~~~ 99 (358)
T PF01566_consen 25 LKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLFG-----IPLWIWVLLVA 99 (358)
T ss_pred HHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCcHHHHHHHH
Confidence 477788888887763 34556667888999998888877777777666666666665555542 12222222222
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccccCCc----ccccccCC-cChhHHHHHHHHHhcchHhhhh
Q 010647 147 GALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILS-IPRIKPRR----WLVVDFKK-VDWRGYFNSMFWNLNYWDKAST 220 (505)
Q Consensus 147 ~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~-~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~a~~G~e~~~~ 220 (505)
+....+-+...+-..+++++...+..+..+.+++.. ..+++... +..+..+. .+.....+.+=+....++...|
T Consensus 100 ~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g~~~P~~p~~~~~~~~valiGttv~p~~lf~~ 179 (358)
T PF01566_consen 100 VIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARGLVVPSIPGPGSLLFAVALIGTTVMPHNLFLH 179 (358)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhhccCCCCcchhHHHHHHHHHHHhhhHHHHHHH
Confidence 222223221122344444444444333322222222 22222221 11011111 1111111110011111221111
Q ss_pred h---hccccCcCc---c--hhHHH---HHHHHHHHHHHHHHHHHHhhcc-CCCCcCccccHHHHHHHHhcc-hHHHHHHH
Q 010647 221 L---AGEVENPSK---T--FPKAL---LGAVVLVVSSYLIPLLAGTGGL-TSLSSEWSDGYFAEVGMLIGG-FWLKWWIQ 287 (505)
Q Consensus 221 ~---~~E~k~p~~---~--ip~ai---~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 287 (505)
- .|+-.+++| + .+.+- ..+..+..++-..+..+..... +.+....+.+...+..+...| ++...++.
T Consensus 180 s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~~~~~li~~ai~i~~A~~l~~~~~~~~~~~~~~~~L~~~~G~~~a~~lF~ 259 (358)
T PF01566_consen 180 SSLVQEKGWTGNRSRPDEALKYARFDTIIGMIVSFLINVAILIVAAAVLYPGGSEVETAAQAAQALEPLLGSPWARYLFA 259 (358)
T ss_pred HHHhhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHhcCchHHHHhHH
Confidence 1 122211211 1 22221 2222222222111111111222 222222233456677777888 78899999
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH
Q 010647 288 AASAMSNLGLFEAEMSGDAFQLLGMS 313 (505)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~sR~l~a~a 313 (505)
+....+.+++..+...+.++.+-..-
T Consensus 260 igl~~a~fss~i~~~~~~~~~~~~~~ 285 (358)
T PF01566_consen 260 IGLFAAGFSSSITATLAGAYVLADFL 285 (358)
T ss_pred HHHHHHHHhhHHHhccccceehHhhh
Confidence 99999999999888888887765443
No 79
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.90 E-value=0.00015 Score=74.29 Aligned_cols=161 Identities=18% Similarity=0.074 Sum_probs=88.7
Q ss_pred cCCCccchhhHHHHHHHHhcc-CCcCchhhh-hhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc-hhHhHHh
Q 010647 16 KTSPKLTVLPLIALIFYEVSG-GPFGVEDSV-KAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGG-YVIWISS 92 (505)
Q Consensus 16 ~~~r~l~~~~~~~~~~~~i~g-~~~~~~~~~-~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg-~y~~~~~ 92 (505)
+.+|+.+.++.+.+=++..+. ..+.++... ..+-+....+++.+++.++..++.++ .+.++ |+.|= .....+.
T Consensus 4 ~~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~-~~~~G---~r~Gl~~~v~sR~ 79 (440)
T PF02133_consen 4 ESERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVAL-MGIIG---PRTGLPTMVLSRA 79 (440)
T ss_dssp -GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHH-HTHHH---HCC---HHHHTTT
T ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHH-hcccc---cccCCCchhcchh
Confidence 356777888888876655543 222333332 22123334566666666543333233 33344 44433 5566677
Q ss_pred hhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhh-h-----------hhhhHHHHHHHHHHHHHHHHHhhhHHH
Q 010647 93 AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIF-N-----------LLIARIPALLGITGALTYLNYRGLHIV 160 (505)
Q Consensus 93 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~i~~~g~~~~ 160 (505)
.||.+-+.+......+..+...+.+....++.+....+.. + ......+..++..++.....+.|.+..
T Consensus 80 ~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~l 159 (440)
T PF02133_consen 80 SFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFAIYGMKAL 159 (440)
T ss_dssp TS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHHHCTHHHHH
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHHhcCHHHH
Confidence 8999888999988888888888888888888888766533 1 112223333344455666677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010647 161 GFSAVSLLVFSLCPFVVMGI 180 (505)
Q Consensus 161 ~~~~~~~~~~~i~~~~~~~i 180 (505)
.+++.+...+..+..+...+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~ 179 (440)
T PF02133_consen 160 RRLAVIAAPILLVVFIGMLI 179 (440)
T ss_dssp HHHHHCCHHHHHHHHHHHHH
T ss_pred HhHHhhhhHHHHhhhhheeE
Confidence 88877766655444433333
No 80
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=97.84 E-value=0.0054 Score=62.14 Aligned_cols=284 Identities=13% Similarity=-0.039 Sum_probs=128.9
Q ss_pred CCccchhhHHHHHHHHhccC--CcCchhhhhhcCchHH--HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhh
Q 010647 18 SPKLTVLPLIALIFYEVSGG--PFGVEDSVKAGGGPLL--SLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSA 93 (505)
Q Consensus 18 ~r~l~~~~~~~~~~~~i~g~--~~~~~~~~~~~~G~~~--~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~ 93 (505)
.|+++++-.....+++.+|+ ..+.+..... .|..+ ..+++.+..+ ..++.++.--++. +.-..++|.++-
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~-~G~~~~~~~~~~~~~~~----~~~~~~~~~~r~~-~~~T~~e~~~~R 78 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYS-YGISGLWYAIGYAIGFL----LFALFFAPRLRRS-GAVTIPEYLEKR 78 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHH-T-GGGGHHHHHHHHHHH----HHHHHTHHHHHHT-T--SHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcceeeeccccchhHH----HHHHHHHHhhccc-chhhhhhhhhhh
Confidence 58899998887777777773 4566666666 55433 2222222222 2233333333322 234578899999
Q ss_pred hCChh--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHH---HHHHHHH
Q 010647 94 FGPFW--GFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVG---FSAVSLL 168 (505)
Q Consensus 94 ~g~~~--g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~---~~~~~~~ 168 (505)
+|++. ..+......+......+.+..+.+..++..++. +....++ +...++......-|.|... .+|.++.
T Consensus 79 yg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi---~~~~~~~-i~~~i~~iYt~~GGl~av~~td~iQ~~i~ 154 (406)
T PF00474_consen 79 YGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGI---PYNTAIL-IVGVIVIIYTFFGGLRAVAWTDFIQGVIM 154 (406)
T ss_dssp T-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-----HHHHHH-HHHHHHHHTTCTT------SHHHHHHHHH
T ss_pred cCCchhhhhhcccccchhhhhhhhccccccccchhhccch---hhhHHHH-HHHHHHHHhhhhhhHhhhhHHHHHHHHHH
Confidence 99887 566555556666677778888888888877652 1122111 1222233344445666544 4554443
Q ss_pred HHHHHHHHHHHHHHhcc----------ccCC---cccccccCCc--ChhHHHHHHHHHhcchHhhhhhhcc---ccCcCc
Q 010647 169 VFSLCPFVVMGILSIPR----------IKPR---RWLVVDFKKV--DWRGYFNSMFWNLNYWDKASTLAGE---VENPSK 230 (505)
Q Consensus 169 ~~~i~~~~~~~i~~~~~----------~~~~---~~~~~~~~~~--~~~~~~~~~~~a~~G~e~~~~~~~E---~k~p~~ 230 (505)
.+..+.+.......... .++. .+.+...+.. .+........+ ..|.....+.... .|| +|
T Consensus 155 ~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~p~~~qR~~aak~-~~ 232 (406)
T PF00474_consen 155 IIGAIVVLIFVLSAVGGFGGLFQNLSAAHPNFLDLFNPGGFSMFSSPLFFLSFWIAL-MLGTFGAPHFWQRFLAAKS-PK 232 (406)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH-GGGG-SS--SS-----SSGGGGS-TTHH-HHSTHHH-HHHHHHHSSSH-HH
T ss_pred HHHHHHhhhccchhcCCchhhHHHHhhcCcccccccCCCCcccccchhhhHHHHHHH-HhhhccchHHHHHHHhcCC-HH
Confidence 33332222222211100 0110 0111110000 01110000011 1233322333222 344 36
Q ss_pred chhHHHHHHHHHHHHHHHHHH------HHHhhccCCC---CcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Q 010647 231 TFPKALLGAVVLVVSSYLIPL------LAGTGGLTSL---SSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAE 301 (505)
Q Consensus 231 ~ip~ai~~~~~~~~~~y~~~~------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (505)
+..|+...+.....+++.+.. .......|+. +....+..+..+..+..+++...++....+.+..++..+.
T Consensus 233 ~ar~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gl~~~~~~aA~~ST~~s~ 312 (406)
T PF00474_consen 233 TARKGMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAAQYLPPGLAGLFLAGILAAIMSTADSL 312 (406)
T ss_dssp HHHHHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT-TS-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHhhhheeeehHHhhhhhhhhcccccccccccccccCCcccchhhhhhhccchhHHHHHHHHHHhhhHHHHHH
Confidence 677877776654444433311 1122222221 1233455677888888888887777777666777777777
Q ss_pred hhhhhHHHHHHHhcC
Q 010647 302 MSGDAFQLLGMSEMG 316 (505)
Q Consensus 302 ~~~~sR~l~a~a~dg 316 (505)
+.+.+-. ++||=
T Consensus 313 l~a~ss~---~~~Di 324 (406)
T PF00474_consen 313 LLAISSI---FSRDI 324 (406)
T ss_dssp HHHHHHH---HHHHC
T ss_pred Hhhhhhh---hhHHh
Confidence 7777655 46773
No 81
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.80 E-value=0.054 Score=55.01 Aligned_cols=60 Identities=10% Similarity=-0.124 Sum_probs=39.4
Q ss_pred HHHHHHHhhccCCCC-C-chhHhHHhhhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 010647 69 EALITAELATSFPEN-G-GYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHS 128 (505)
Q Consensus 69 ~a~~~~el~s~~P~~-G-g~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (505)
....+-|++.|+-.. | |.-.-.++.+|+.+++.......++.......+..+.+.-++.+
T Consensus 77 ~~~~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll 138 (439)
T PRK00701 77 MAMLLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLL 138 (439)
T ss_pred HHHHHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888877773 3 56778888899998887765555555555555555444444433
No 82
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=97.74 E-value=0.018 Score=58.83 Aligned_cols=294 Identities=16% Similarity=0.145 Sum_probs=142.1
Q ss_pred HHHHHHhhccCCC--CCchhHhHHhhh-----CChhHHHH------HHHH-HHHhhhhHHHHHHHHHHHHHHhchhhhhh
Q 010647 70 ALITAELATSFPE--NGGYVIWISSAF-----GPFWGFQE------GFWK-WLSGVLDNALYPVLFLDYLKHSLPIFNLL 135 (505)
Q Consensus 70 a~~~~el~s~~P~--~Gg~y~~~~~~~-----g~~~g~~~------g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (505)
..=|.-+.-+--+ +||.....+... +|...+.. |-+. .-+.+.+.+....+..|=+....|...
T Consensus 52 ~iKYv~ivlradn~GEGGi~aL~sL~~~~~~~~~~~~~~l~~l~l~G~al~~gDgviTPAISVlSAvEGl~v~~p~~~-- 129 (534)
T PF02705_consen 52 TIKYVLIVLRADNNGEGGIFALYSLIRRFLKSSKRRRWLLLILGLLGAALFYGDGVITPAISVLSAVEGLEVATPSLE-- 129 (534)
T ss_pred HHheEEEEEEeCCCCChhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhhcceeecchHHHHHHhhhhhccCCCCc--
Confidence 4444444444333 577654433322 34444441 2222 233455666666676676665556544
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC---ccccc----ccCCcChhH--HHH
Q 010647 136 IARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPR---RWLVV----DFKKVDWRG--YFN 206 (505)
Q Consensus 136 ~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~---~~~~~----~~~~~~~~~--~~~ 206 (505)
-....++++++.....+.-+|+...|++---...+=++.+..+.+..+.+. |. .++|. .....++.+ .+.
T Consensus 130 ~~Vv~it~~ILv~LF~iQ~~GT~~ig~~FgPim~~WF~~l~~~G~~~I~~~-p~Vl~A~nP~yai~f~~~~~~~~~~~LG 208 (534)
T PF02705_consen 130 PYVVPITIAILVGLFAIQRFGTAKIGKLFGPIMLLWFLTLGVLGLYNIIQH-PEVLKALNPYYAIRFFIRNGWIGFFVLG 208 (534)
T ss_pred ceehhHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhC-HHHHHHhCHHHHHHHHHHcCCchhhhcc
Confidence 234567778888889999999888777633222222222233333222221 11 11110 000112222 234
Q ss_pred HHHHHhcchHhhhhhhccccC-cCcchhHHHHHHHHHHHHH-HHHHHHHHhhccCCCCcCccccHHHHHHHHhcchHHHH
Q 010647 207 SMFWNLNYWDKASTLAGEVEN-PSKTFPKALLGAVVLVVSS-YLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKW 284 (505)
Q Consensus 207 ~~~~a~~G~e~~~~~~~E~k~-p~~~ip~ai~~~~~~~~~~-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (505)
+++.+.+|-|+.-. ++-+ .+|.+.++-..-+.-+.++ |+... +.....| +...+|+..+. ++++.+
T Consensus 209 ~V~L~~TGaEALyA---DmGHfg~~~Ir~aw~~~V~PaL~LnY~GQg-A~ll~~p----~~~~npFf~~~----P~~~~~ 276 (534)
T PF02705_consen 209 AVFLCVTGAEALYA---DMGHFGRKPIRIAWFFLVFPALLLNYFGQG-ALLLSHP----EAVSNPFFLLI----PEWLLW 276 (534)
T ss_pred hHHHHHhhHHHHHh---hhccccchhhhhhHHHHHHHHHHHHHccHH-HHHHcCc----chhhhHHHHHh----HHHHHH
Confidence 56788999997643 2322 3454544444423322222 32222 2222222 12244555443 334444
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChh-hhhccC-C-CC---CCh-HHHHHHHHHHHHHHhhhHHHHHHHH
Q 010647 285 WIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPA-IFASRS-K-YG---TPT-LSILCSATGVIFLSWMSFQEILEFL 357 (505)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~~-k-~~---~P~-~ai~~~~~~~~~~~~~~~~~l~~~~ 357 (505)
.+.+.+.++.+-+..+.+.++--+..+.-+-|.+|+ ...+.+ + +| .|. |-+++.+++.+++.+-+-+.+.+.+
T Consensus 277 p~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~la~AY 356 (534)
T PF02705_consen 277 PMVILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSNLAAAY 356 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChHHHHHHH
Confidence 444444444444444444444445555667799995 233333 2 22 333 2233333333344455778888888
Q ss_pred HHHHHHHHHHHHHH-HHHHHhh
Q 010647 358 NFLYAIGMLLEFAA-FIKLRIK 378 (505)
Q Consensus 358 ~~~~~~~~~~~~~~-~~~~r~~ 378 (505)
.++.....+++.+. .+..|++
T Consensus 357 GiAVt~tM~iTT~L~~~v~~~~ 378 (534)
T PF02705_consen 357 GIAVTGTMLITTILLFLVMRRV 378 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 88877777664443 3444444
No 83
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.44 E-value=0.16 Score=50.84 Aligned_cols=62 Identities=18% Similarity=0.073 Sum_probs=36.4
Q ss_pred HHHHHHHHhhccCCCC-C-chhHhHHhhhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhc
Q 010647 68 PEALITAELATSFPEN-G-GYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSL 129 (505)
Q Consensus 68 ~~a~~~~el~s~~P~~-G-g~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (505)
+.++..-|++.++-.. | |.-.=.++.++|+++++......++.....-.+..+.+--++.++
T Consensus 59 l~~~~~Q~~~arLgivTG~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~ 122 (416)
T COG1914 59 LMAYILQELSARLGIVTGKGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLF 122 (416)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3466666776666552 2 244556667888888777666555555555555555555444444
No 84
>PRK12488 acetate permease; Provisional
Probab=97.39 E-value=0.25 Score=52.04 Aligned_cols=145 Identities=12% Similarity=-0.039 Sum_probs=81.1
Q ss_pred CCCccchhhHHHHHHHHhccC--CcCchhhhhhcCchHH--HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHh
Q 010647 17 TSPKLTVLPLIALIFYEVSGG--PFGVEDSVKAGGGPLL--SLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (505)
Q Consensus 17 ~~r~l~~~~~~~~~~~~i~g~--~~~~~~~~~~~~G~~~--~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~ 92 (505)
-.|+++.|.......++.+++ ..+.++..+. .|... ..+++.++.+ ...+.+++--++.-. -..+.|.++
T Consensus 65 aGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~-~G~~~~~~~~g~~~g~~----~~~~~~a~~lr~~g~-~T~~d~l~~ 138 (549)
T PRK12488 65 AGGGLTGMQNGLAIAGDMISAASFLGISAMMFM-NGYDGLLYALGVLAGWP----IILFLIAERLRNLGK-YTFADVVSY 138 (549)
T ss_pred eCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChhHHHHHHHHHHHHH----HHHHHHHHHHHHCCC-cchHHHHHH
Confidence 468999999988777777663 4567776666 55432 2233222222 122334443333322 245677777
Q ss_pred hhC-ChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 010647 93 AFG-PFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFS 171 (505)
Q Consensus 93 ~~g-~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~ 171 (505)
-|| |....+.+....+........+....+..++.+++. +....++ +...+.......-|.|-..+.+.+=.++.
T Consensus 139 Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi---~~~~~ii-i~~~i~~~Yt~~GGm~av~~td~iQ~~im 214 (549)
T PRK12488 139 RLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGI---SYLYAVV-IVGALMVLYVTFGGMLATTWVQIIKAVLL 214 (549)
T ss_pred HcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CHHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 777 668888888777777777777777777777776542 1111111 12222333444556666555444433333
No 85
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=97.10 E-value=0.086 Score=54.64 Aligned_cols=247 Identities=13% Similarity=0.045 Sum_probs=117.8
Q ss_pred HhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 010647 109 SGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKP 188 (505)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~ 188 (505)
+.+.+.+....+..|=+....|...+ ....++++++...+.+.-+|+...|++---...+=++.+.++.+..+.+ +|
T Consensus 116 DgvITPAISVLSAVEGL~v~~p~l~~--~Vvpit~~ILv~LF~iQ~~GT~~vG~~FgPIm~vWF~~i~~~Gi~~I~~-~P 192 (622)
T PRK10745 116 EVVITPAISVMSAIEGLEIVAPQLDT--YIVPLSIIVLTLLFMIQKHGTGMVGKLFAPIMLTWFLTLAVLGLRSIIA-NP 192 (622)
T ss_pred ccccchhHHHHHHhhcccccCCCCCC--ccHHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHhc-CH
Confidence 34555566666666666555565432 2456778888888999999988777654332222223333333333322 22
Q ss_pred Cc---cccc----ccCCcChhH--HHHHHHHHhcchHhhhhhhccccCcCcchhHHHHHHHHHHH-HHHHHHHHHHhhcc
Q 010647 189 RR---WLVV----DFKKVDWRG--YFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVV-SSYLIPLLAGTGGL 258 (505)
Q Consensus 189 ~~---~~~~----~~~~~~~~~--~~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~~-~~y~~~~~~~~~~~ 258 (505)
.- ++|. .....++.+ .+.+++.+.+|-|+.-. +--.-.+|.+.++-..-+.=+. +-|+.....+. ..
T Consensus 193 ~Vl~AlnP~ya~~f~~~~~~~gf~~LG~V~L~vTGaEALYA--DmGHFG~~~Ir~aW~~~v~P~L~LnY~GQgA~ll-~~ 269 (622)
T PRK10745 193 EVLHALNPMWAVHFFLEYKTVSFFALGAVVLAITGVEALYA--DMGHFGKFPIRLAWFTVVLPSLVLNYFGQGALLL-KN 269 (622)
T ss_pred HHHhHhCHHHHHHHHHhCCCceEEEecceeeeccchHHHhh--ccCCCCccceeeeehhhHHHHHHHHhcchHHHHh-cC
Confidence 21 1110 000112222 23445778889997532 2222234555444443333222 22444333332 12
Q ss_pred CCCCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChh-hhhccC-C--CCCChHH
Q 010647 259 TSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPA-IFASRS-K--YGTPTLS 334 (505)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~~-k--~~~P~~a 334 (505)
| +...+|+..+ .++++.+-+.+.+.++.+-+..+.+.++--+..+.-+-|.+|+ ...+.+ + -+.-+..
T Consensus 270 p----~~~~NpFf~~----~P~~~~~p~viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~ 341 (622)
T PRK10745 270 P----EAIKNPFFLL----APDWALIPLLILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPF 341 (622)
T ss_pred c----hhhcCcHHHh----CChhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHH
Confidence 2 2234565444 3344444444444444333334444444444444556799994 233333 2 2333333
Q ss_pred H-HHH--HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 010647 335 I-LCS--ATGVIFLSWMSFQEILEFLNFLYAIGMLLEF 369 (505)
Q Consensus 335 i-~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 369 (505)
+ |+. .++..++.+-+-+.+.+.+.++.....+++.
T Consensus 342 vNw~Lmv~~i~~vl~F~sS~~La~AYGiAVt~tM~iTT 379 (622)
T PRK10745 342 VNWLLYVAVVIVIVSFEHSSNLAAAYGIAVTGTMVLTS 379 (622)
T ss_pred HHHHHHHHHHeeEEEecCchHHHHHhhhhheeHhHHHH
Confidence 2 333 3333333355667777777776665555544
No 86
>PRK10484 putative transporter; Provisional
Probab=97.05 E-value=0.54 Score=49.26 Aligned_cols=286 Identities=14% Similarity=0.029 Sum_probs=125.8
Q ss_pred CCCccchhhHHHHHHHHhccC--CcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhhh
Q 010647 17 TSPKLTVLPLIALIFYEVSGG--PFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAF 94 (505)
Q Consensus 17 ~~r~l~~~~~~~~~~~~i~g~--~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~ 94 (505)
-.|++++|-..+...++..++ ..+.++..+. .|.....+. ....+..++.++.++.--++. ..=..+.|.++-+
T Consensus 36 agR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~-~G~~~~~~~--~~~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Ry 111 (523)
T PRK10484 36 AGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYA-SGMSVMAWE--VTAAIALIILALIFLPRYLKS-GITTIPDFLEERY 111 (523)
T ss_pred cCCCCchHHHHHHHHHHHhhHHHHhcchHHHHH-hCHHHHHHH--HHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHhc
Confidence 479999998877777776663 4567776666 565332221 111111222343333333332 1235678888889
Q ss_pred CChhHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHhch---hhhhhhhH-HHHH-HH-HHHHHHHHHHhhhHHHH---HHH
Q 010647 95 GPFWGFQEGFWKWLSGVLD-NALYPVLFLDYLKHSLP---IFNLLIAR-IPAL-LG-ITGALTYLNYRGLHIVG---FSA 164 (505)
Q Consensus 95 g~~~g~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~-~~-~~~~~~~i~~~g~~~~~---~~~ 164 (505)
|++..-..+....+.+... .+......+..++..+. ..+-+... ..+. ++ ..+.......-|.|... .+|
T Consensus 112 g~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV~~TD~iQ 191 (523)
T PRK10484 112 DKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELLGISYGAAIWLLVWLIGIIGAIYAVFGGLKAVAVSDTIN 191 (523)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 9876655555544444332 22222233333332211 01111111 1111 11 12223344445566544 455
Q ss_pred HHHHHHHHHHHHHHHHHHhcc------------ccCCccccccc--CCcChhHHHHHHHH-Hhcch---Hhhhhhhcccc
Q 010647 165 VSLLVFSLCPFVVMGILSIPR------------IKPRRWLVVDF--KKVDWRGYFNSMFW-NLNYW---DKASTLAGEVE 226 (505)
Q Consensus 165 ~~~~~~~i~~~~~~~i~~~~~------------~~~~~~~~~~~--~~~~~~~~~~~~~~-a~~G~---e~~~~~~~E~k 226 (505)
.++..+..+.+.......... .+++.+..... ++..|...+....+ .+.++ ....+-.=-.|
T Consensus 192 ~vim~i~~iiv~~~~l~~~g~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~qR~~aak 271 (523)
T PRK10484 192 GIGLLIGGLLVPVFGLIALGDGSFMQGLEQLTTVHPEKLNSIGGATDPVPFPTLFTGLILVNLFYWCTNQSIVQRALGAK 271 (523)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccHHhHHHHHhhcCchhhcccCCCCCCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHhCC
Confidence 444333222221111111100 01111111111 11223322222111 11111 11112222245
Q ss_pred CcCcchhHHHHHHHHHHHHHHHHHH---HHHhhccCCCCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhh
Q 010647 227 NPSKTFPKALLGAVVLVVSSYLIPL---LAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMS 303 (505)
Q Consensus 227 ~p~~~ip~ai~~~~~~~~~~y~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (505)
| .|+..|+...+.....+.+++.. +......|+ +..+.+..+..+..+..+++..-++...++.+..++..+.++
T Consensus 272 ~-~k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~-~~~~~d~~~p~~~~~~lp~~l~Gl~~a~ilAA~mST~~s~l~ 349 (523)
T PRK10484 272 N-LAEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGD-GLPNADMAYPTLVNDVLPVPLVGFFAAVLFGAILSTFNGFLN 349 (523)
T ss_pred C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCChhhHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 36677887776654443333222 122222332 233455667777878888777666666656666666666666
Q ss_pred hhhHH
Q 010647 304 GDAFQ 308 (505)
Q Consensus 304 ~~sR~ 308 (505)
+.|-.
T Consensus 350 s~st~ 354 (523)
T PRK10484 350 SASTL 354 (523)
T ss_pred HHHHH
Confidence 66544
No 87
>PLN00148 potassium transporter; Provisional
Probab=96.95 E-value=0.27 Score=52.40 Aligned_cols=245 Identities=13% Similarity=0.066 Sum_probs=111.6
Q ss_pred hhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 010647 110 GVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPR 189 (505)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~ 189 (505)
-+.+.+....+..+=+....|....+ ....+++++++.++.+.-+|+...+++---...+=++.+..+.+..+.+.++.
T Consensus 170 gvlTPAISVLSAVeGl~v~~p~~~~~-~vv~is~~ILv~LF~vQ~~GT~kVg~~FgPIm~lWf~~i~~iGiyni~~~~p~ 248 (785)
T PLN00148 170 GVLTPAISVLSSVSGLQVTETKLTDG-ELVLLACVILVGLFALQHCGTHRVAFMFAPIVIIWLLSIGSIGLYNIIHWNPK 248 (785)
T ss_pred cccchhHHHHHHhccceecCCCCCCC-eehhHHHHHHHHHHHHhccccHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCHH
Confidence 33444444444444444444543222 23457778888889999999887776543332222333344444444333332
Q ss_pred c---cccc------ccC-CcChhHHHHHHHHHhcchHhhhhhhccccCcCcchhHHHHHHHHHHHHH-HHHHHHHHhhcc
Q 010647 190 R---WLVV------DFK-KVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSS-YLIPLLAGTGGL 258 (505)
Q Consensus 190 ~---~~~~------~~~-~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~~~~-y~~~~~~~~~~~ 258 (505)
- ++|. ..+ ..+|. .+.+++.+.+|-|+.-. +=-.-.+|.+.+|-..-+.=+.++ |+... +.....
T Consensus 249 Vl~AlnP~y~~~ff~~~~~~g~~-~LGgV~L~iTGaEALyA--DlGHFg~~~Iriaw~~~V~P~L~L~Y~GQa-A~ll~~ 324 (785)
T PLN00148 249 IIHALSPYYIIKFFRVTGKDGWI-SLGGILLSITGTEAMFA--DLGHFTAASIRLAFATVIYPCLVVQYMGQA-AFLSKN 324 (785)
T ss_pred HhhhcCHHHHHHHHHhCCCceEE-eecchheeccchhhhhh--hccCCCccceEEeeeehHHHHHHHHHcchH-HHHhcC
Confidence 1 1110 000 11222 23456788999997532 222223454544444333333333 33333 222222
Q ss_pred CCCCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChh-hhhccC-C-CC-CChHH
Q 010647 259 TSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPA-IFASRS-K-YG-TPTLS 334 (505)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~~-k-~~-~P~~a 334 (505)
|. ...+|+... .++++.+-+.+.+.++.+-+-.+.+.+.--+....-+-|.+|+ +.-+.+ + +| .-+..
T Consensus 325 p~----~~~npFf~~----iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~ 396 (785)
T PLN00148 325 IP----SIPNSFYDS----IPDPVFWPVFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPE 396 (785)
T ss_pred cc----cccCcHHHh----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHH
Confidence 31 123454333 3334444444444444333333333333334444445589994 233334 2 23 22222
Q ss_pred H-HHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHH
Q 010647 335 I-LCSATGVI--FLSWMSFQEILEFLNFLYAIGMLL 367 (505)
Q Consensus 335 i-~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~ 367 (505)
+ |+.++.++ .+.+-+-+.+.+.+.++.....++
T Consensus 397 vNw~Lmv~~i~vv~~F~~s~~la~AYGiAV~~vM~i 432 (785)
T PLN00148 397 INWILMILTLAVTIGFRDTTLIGNAYGLACMTVMFI 432 (785)
T ss_pred HHHHHHHHHHHhheeeccchhHHHhhhhheeeHHHH
Confidence 2 33333333 333445667777776665555444
No 88
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=96.86 E-value=0.46 Score=50.25 Aligned_cols=248 Identities=14% Similarity=0.056 Sum_probs=117.4
Q ss_pred hhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 010647 110 GVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPR 189 (505)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~ 189 (505)
-+.+.+....+..+=++...|.... .....++++++...+.+.-+|+...|+.---...+=++.+.++.+..+.+.+|.
T Consensus 141 gviTPAiSVLSAVeGl~v~~p~~~~-~~Vv~it~~ILv~LF~iQ~~GT~kvg~~FgPim~vWF~~l~~~Gi~~I~~~~P~ 219 (688)
T TIGR00794 141 GVLTPAISVLSAVSGLEIVAPSLSD-TWVVPISCIILVLLFLIQRFGTAKVGFTFAPIILVWLLLLAGIGIYNIVKFNPE 219 (688)
T ss_pred cccccchhhhhhhccccccCCCCCC-CeehhHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHH
Confidence 3444445555555555544454422 234567778888889999999887776543332222333333333333332222
Q ss_pred c---cccc----ccCCcChhH--HHHHHHHHhcchHhhhhhhccccCcCcchhHHHHHHHHHHHHH-HHHHHHHHhhccC
Q 010647 190 R---WLVV----DFKKVDWRG--YFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSS-YLIPLLAGTGGLT 259 (505)
Q Consensus 190 ~---~~~~----~~~~~~~~~--~~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~~~~-y~~~~~~~~~~~~ 259 (505)
- ++|. .....++.+ .+.+++.+.+|-|+.-. +=-.-.+|.+.++-..-+.-+.++ |+.....+ ...|
T Consensus 220 Vl~AlnP~ya~~f~~~~~~~~~~~LG~V~L~iTGaEALyA--DmGHFg~~~Ir~aw~~~V~P~L~LnY~GQgA~l-l~~p 296 (688)
T TIGR00794 220 VLKALSPYYAVQFFIEYGTVGWVSLGGVVLSITGVEAMFA--DLGHFGKLPIQLAWFTFVYPSLILCYIGQAAYL-SKHP 296 (688)
T ss_pred HHhHhCHHHHHHHHHHCCCceeeeccchhheeccHhhhhc--ccCCCCcccceeehHHHHHHHHHHHHcchHHHH-hcCc
Confidence 1 1110 000112222 34456788999997532 222223444544444333333332 43333322 2222
Q ss_pred CCCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChh-hhhccC-C-C-CCChHHH
Q 010647 260 SLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPA-IFASRS-K-Y-GTPTLSI 335 (505)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~~-k-~-~~P~~ai 335 (505)
. ...+|+... .++++.+.+.+.+.++.+-+..+.+.++--+....-+-|.+|+ ...+.+ + + +.-+..+
T Consensus 297 ~----~~~NpFf~~----~P~~~~~p~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~v 368 (688)
T TIGR00794 297 E----AIKNPFFLS----IPDWALWPLFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFV 368 (688)
T ss_pred c----hhcCcHHHh----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHH
Confidence 1 124455443 3345545444444444444444444444444444556699994 233333 2 2 2222222
Q ss_pred -HHHHHH--HHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 010647 336 -LCSATG--VIFLSWMSFQEILEFLNFLYAIGMLLEF 369 (505)
Q Consensus 336 -~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 369 (505)
|+.++. ..++.+-+-+.+.+.+.++.....+++.
T Consensus 369 Nw~Lmv~~i~vvl~F~~S~~la~AYGiaVt~tM~iTT 405 (688)
T TIGR00794 369 NWLLMLGVIAVTAGFRDTNNLGAAYGIAVTGTFLVTT 405 (688)
T ss_pred HHHHHHHHHheeEEecChHHHHHHhhhhhhhhhHHHH
Confidence 333333 3333355677777777777666665533
No 89
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=96.75 E-value=0.72 Score=46.12 Aligned_cols=164 Identities=10% Similarity=-0.041 Sum_probs=72.4
Q ss_pred ccCCCccchhhHHHHHHHHhcc-CCcCchhhhhhcCc--hHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhH-
Q 010647 15 AKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGG--PLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWI- 90 (505)
Q Consensus 15 ~~~~r~l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G--~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~- 90 (505)
.+.+|..++|+-+.+=.+...+ +...+..+..+ -| +.-.+...+++=++ ...+.-++++ .|..|+-.
T Consensus 50 ~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~-lGLswwq~~~tv~vG~~~-----~~~f~~lns~---~G~~yhIsF 120 (572)
T KOG2466|consen 50 PPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALE-LGLSWWQTWITVWVGYLF-----TAIFLVLNSR---PGSDYHISF 120 (572)
T ss_pred CcccccccHHHHHHHHHhccccccceeehhhHHh-ccCCHHHHHHHHHHHHHH-----HHHHHHHccC---CCcccccce
Confidence 4567899999998875544433 22333332222 22 11122222222221 1112222322 35556543
Q ss_pred ---Hh-hhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchh----h-------h---hhhhHHHHHHHHHHHHHHH
Q 010647 91 ---SS-AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPI----F-------N---LLIARIPALLGITGALTYL 152 (505)
Q Consensus 91 ---~~-~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-------~---~~~~~~~~~~~~~~~~~~i 152 (505)
+| .||-..+-.--..-.+.......+++...++-++-+++. + . .....++...++-++....
T Consensus 121 pv~sR~sFGiygS~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~ 200 (572)
T KOG2466|consen 121 PVLSRSSFGIYGSLWPIINRVVMACVWYGVNAWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPF 200 (572)
T ss_pred eeeeeeehhhhHhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhhe
Confidence 22 244322221111222233333445666666655544321 1 1 1223344444444445555
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010647 153 NYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIK 187 (505)
Q Consensus 153 ~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~ 187 (505)
.+++....-++..+-..+.......+.+..+.+.+
T Consensus 201 ~~~~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAh 235 (572)
T KOG2466|consen 201 YWFPPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAH 235 (572)
T ss_pred eeccHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 56666666666666555555455555555544433
No 90
>PLN00149 potassium transporter; Provisional
Probab=96.73 E-value=0.66 Score=49.64 Aligned_cols=248 Identities=15% Similarity=0.069 Sum_probs=112.6
Q ss_pred hhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCc
Q 010647 111 VLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRR 190 (505)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~ 190 (505)
+.+.+....+..+=+....|....++....+++++++.++.+.-+|+...+++---...+=++.+..+.+..+.+.+|.-
T Consensus 171 vlTPAISVLSAVeGl~v~~~~~~~~~vvv~is~~ILv~LF~~Q~~GT~kvg~~FgPIml~Wf~~i~~iGiyni~~~~p~V 250 (779)
T PLN00149 171 VLTPAISVFSAVSGLELSMSKEHHKYVEVPVACIILIGLFALQHYGTHRVGFLFAPVVLTWLLCISAIGVYNIFHWNPHV 250 (779)
T ss_pred ccchhHHHHHHhhcccccCCCccCCceehHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHhH
Confidence 33444444444444443333211223334578888888999999998777765433222223333334444443333321
Q ss_pred ---cccc------c-cCCcChhHHHHHHHHHhcchHhhhhhhccccCcCcchhHHHHHHHHHHHHH-HHHHHHHHhhccC
Q 010647 191 ---WLVV------D-FKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSS-YLIPLLAGTGGLT 259 (505)
Q Consensus 191 ---~~~~------~-~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~~~~-y~~~~~~~~~~~~ 259 (505)
++|. . .+..+|. .+.+++.+.+|-|+.-. +=-.-.+|.+.+|-..-+.=+.++ |+.-. +.....|
T Consensus 251 l~AlnP~y~~~f~~~~~~~g~~-~LGgV~L~iTG~EALyA--DlGHF~~~~Ir~aw~~~V~P~L~L~Y~GQa-A~l~~~p 326 (779)
T PLN00149 251 YQALSPYYMYKFLKKTQRGGWM-SLGGILLCITGSEAMFA--DLGHFSQLSIKIAFTSLVYPSLILAYMGQA-AYLSKHH 326 (779)
T ss_pred hhhcCHHHHHHHHHHCCCceeE-eecchhhcccchhhhhh--cccCCCccceeeeehhhHHHHHHHHhhhHH-HHHhcCc
Confidence 1110 0 0111222 23456788999997532 222233455545544333333333 44333 3233233
Q ss_pred CCCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChh-hhhccC-C-CC-CChHHH
Q 010647 260 SLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPA-IFASRS-K-YG-TPTLSI 335 (505)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~~-k-~~-~P~~ai 335 (505)
.. ..+..+|+... .++++.+-+.+.+.++.+-+-.+.+.+.--+....-+-|.+|+ +.-+.+ + +| .-+..+
T Consensus 327 ~~-~~~~~~pFy~~----iP~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~v 401 (779)
T PLN00149 327 VI-ESDYRIGFYVS----VPEKLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEI 401 (779)
T ss_pred ch-hccccCcHHHh----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHH
Confidence 21 22223354333 3334444444444444333333333333334444445589994 223333 2 22 222222
Q ss_pred -HHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHH
Q 010647 336 -LCSATGVI--FLSWMSFQEILEFLNFLYAIGMLL 367 (505)
Q Consensus 336 -~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~ 367 (505)
|+.++.++ .+.+-+-+.+.+.+.++.....++
T Consensus 402 Nw~Lmv~~i~vv~~F~~s~~l~~AYGiAV~~vM~i 436 (779)
T PLN00149 402 NWTLMLLCLAVTVGFRDTKRLGNASGLAVITVMLV 436 (779)
T ss_pred HHHHHHHHHhheeEecChHHHHHHhhhhhehHHHH
Confidence 33333333 333556677777777766655555
No 91
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=96.67 E-value=1.1 Score=47.20 Aligned_cols=144 Identities=13% Similarity=-0.051 Sum_probs=74.3
Q ss_pred CCCccchhhHHHHHHHHhcc--CCcCchhhhhhcCchHHH--HHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHh
Q 010647 17 TSPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPLLS--LLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (505)
Q Consensus 17 ~~r~l~~~~~~~~~~~~i~g--~~~~~~~~~~~~~G~~~~--i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~ 92 (505)
-.|+++.|.......++..+ +..+.++.... .|.... .+++.++.. ...+.+++--++.-. --.+.|.++
T Consensus 65 aGr~~~~~~~g~si~at~~SaasflG~~G~~y~-~G~~~~~~~~g~~~~~~----i~~~~~a~~lrr~g~-~T~~d~l~~ 138 (549)
T TIGR02711 65 AGGNITGFQNGLAIAGDYMSAASFLGISALVYT-SGYDGLIYSLGFLVGWP----IILFLIAERLRNLGR-YTFADVASY 138 (549)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHH----HHHHHHHHHHHHcCC-ccHHHHHHH
Confidence 46899988776555656555 24466666666 554332 223222222 123334544433322 234456666
Q ss_pred hhC-ChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 010647 93 AFG-PFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVF 170 (505)
Q Consensus 93 ~~g-~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~ 170 (505)
-++ |....+.+....+........+....+..++.+++. +....++ +...+.......-|.|-..+.+.+=.++
T Consensus 139 Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi---~~~~~ii-i~~~i~~~Yt~~GGm~av~~td~iQ~~i 213 (549)
T TIGR02711 139 RLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGL---NYHVAVV-LVGILMVMYVLFGGMLATTWVQIIKAVL 213 (549)
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CHHHHHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 676 567777777666666666667777777777666542 1111111 2222333344455666555444433333
No 92
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=96.63 E-value=1.2 Score=47.07 Aligned_cols=108 Identities=9% Similarity=-0.141 Sum_probs=70.8
Q ss_pred CCCccchhhHHHHHHHHhccC--CcCchhhhhhcCchH--HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHh
Q 010647 17 TSPKLTVLPLIALIFYEVSGG--PFGVEDSVKAGGGPL--LSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (505)
Q Consensus 17 ~~r~l~~~~~~~~~~~~i~g~--~~~~~~~~~~~~G~~--~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~ 92 (505)
-.|++++|.......++..++ ..+.++.... .|.. +..++|.++.+ ..++.+++.-+++.. -..|.|.++
T Consensus 30 aGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~-~G~~~~~~~~g~~~~~~----~~~~~~~p~~rr~~~-~T~~e~l~~ 103 (552)
T TIGR03648 30 AGRGVPPVANGMATAADWMSAASFISMAGLIAF-LGYDGLAYLMGWTGGYV----LLALLLAPYLRKFGK-YTVPDFIGD 103 (552)
T ss_pred eCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHH-hChHHHHHHHHHHHHHH----HHHHHHHHHHHHCCC-ccHHHHHHH
Confidence 469999999887777777663 4466666665 4542 23334433322 234556666666644 368889998
Q ss_pred hhCC-hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhch
Q 010647 93 AFGP-FWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLP 130 (505)
Q Consensus 93 ~~g~-~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (505)
-||+ ...++++....+......+.+....+..++.+.+
T Consensus 104 Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g 142 (552)
T TIGR03648 104 RYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE 142 (552)
T ss_pred HhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 8984 4688888777777777777777777777776654
No 93
>PRK09395 actP acetate permease; Provisional
Probab=96.57 E-value=1.3 Score=46.75 Aligned_cols=137 Identities=12% Similarity=-0.046 Sum_probs=73.7
Q ss_pred CCCccchhhHHHHHHHHhccC--CcCchhhhhhcCchHH--HHHHHHHHHHHHHHHHHHHHHHhhccCCCC--CchhHhH
Q 010647 17 TSPKLTVLPLIALIFYEVSGG--PFGVEDSVKAGGGPLL--SLLGFLIFPLIWSIPEALITAELATSFPEN--GGYVIWI 90 (505)
Q Consensus 17 ~~r~l~~~~~~~~~~~~i~g~--~~~~~~~~~~~~G~~~--~i~~~ii~~~~~~~~~a~~~~el~s~~P~~--Gg~y~~~ 90 (505)
-.|+++.|......+++..++ ..+.++..+. .|... ..+++.++.. ...+.++ .++-+. -..+.|.
T Consensus 67 agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~-~G~~~~~~~~~~~~g~~----~~~~~~~---~~~r~~g~~T~~d~l 138 (551)
T PRK09395 67 AGGGITGFQNGLAIAGDYMSAASFLGISALVFT-SGYDGLIYSIGFLVGWP----IILFLIA---ERLRNLGKYTFADVA 138 (551)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHH-hCHHHHHHHHHHHHHHH----HHHHHHH---HHHhhCCCccHHHHH
Confidence 478999988777666666663 4466666666 55432 2222222211 1222223 333332 2345666
Q ss_pred HhhhC-ChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 010647 91 SSAFG-PFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAV 165 (505)
Q Consensus 91 ~~~~g-~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~ 165 (505)
++-|| |....+.+....+........+....+..++...+. + .+.. +.+...+.......-|.|...+.+.
T Consensus 139 ~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~gi-~-~~~~--ili~~~i~~iYt~~GGm~av~~TD~ 210 (551)
T PRK09395 139 SYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFGL-N-YHVA--VVLVGVLMMVYVLFGGMLATTWVQI 210 (551)
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C-HHHH--HHHHHHHHHHHHhhcchHHHHHHHH
Confidence 67788 558888887777666666677777777777666542 1 1111 1122223344444556666544433
No 94
>PLN00151 potassium transporter; Provisional
Probab=96.40 E-value=0.39 Score=51.40 Aligned_cols=242 Identities=14% Similarity=0.055 Sum_probs=109.2
Q ss_pred hHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCc--
Q 010647 113 DNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRR-- 190 (505)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~-- 190 (505)
+.+....+..+=+....|.+.. .....+++++++.++.+.-+|+...+++---...+=++.+..+.+..+.+.++.-
T Consensus 250 TPAISVLSAVeGL~v~~p~l~~-~~VV~Is~~ILv~LF~~Q~~GT~kVg~~FgPImllWFl~i~~iGiynI~~~~p~Vl~ 328 (852)
T PLN00151 250 TPAMSVMSAVSGLKVGVPGFGQ-DAVVMISVAFLVILFSVQRFGTSKVGFAFGPALALWFCSLGGIGIYNLVKYDSSVFR 328 (852)
T ss_pred ccchhhhhhhccccccCCcCCC-CeehhHHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHHh
Confidence 3334444444444433443322 2345577788888899999998877765432222223333344444443333321
Q ss_pred -cccc------c-cCCcChhHHHHHHHHHhcchHhhhhhhccccCcCcchhHHHHHHHHHHHHH-HHHHHHHHhhccCCC
Q 010647 191 -WLVV------D-FKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSS-YLIPLLAGTGGLTSL 261 (505)
Q Consensus 191 -~~~~------~-~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~~~~-y~~~~~~~~~~~~~~ 261 (505)
++|. . .+..+|. .+.+++.+++|-|+.-. +=-.-.+|.+..|-..-+.=+.++ |+.. -+.+...|.
T Consensus 329 AlnP~Y~~~Ff~~~~~~gw~-~LGgVvLciTGaEALfA--DLGHFg~~sIqiaw~~~V~P~LlL~Y~GQ-aA~L~~~p~- 403 (852)
T PLN00151 329 AFNPVYIYYFFKRNSTKAWS-ALGGCVLCATGSEAMFA--DLGYFSVRSIQLAFTCLVLPCLLLAYMGQ-AAYLMKNPD- 403 (852)
T ss_pred hhCHHHHHHHHHhCCCceEE-Eecceeeeeccchhhhc--ccCCCCccceeeeehhhHHHHHHHHHcch-HHHHhcCcc-
Confidence 1110 0 0111222 23455778889987532 222233454544444333333333 3333 232232231
Q ss_pred CcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChh-hhhccC-C-CC-CChHH-HH
Q 010647 262 SSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPA-IFASRS-K-YG-TPTLS-IL 336 (505)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~~-k-~~-~P~~a-i~ 336 (505)
...+|+.. ..++++.+-+.+.+.++.+-+-.+.+.+.--+....-+-|.+|+ +.-|.+ + +| .-+.. .|
T Consensus 404 ---~~~npFy~----svP~~~~wP~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw 476 (852)
T PLN00151 404 ---SAEQIFFS----SVPSSLFWPVFLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINW 476 (852)
T ss_pred ---cccCcHHH----hCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHH
Confidence 12334432 23334444443433343333333333333333333445589994 233334 2 33 22222 23
Q ss_pred HHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHH
Q 010647 337 CSATGVIF--LSWMSFQEILEFLNFLYAIGMLL 367 (505)
Q Consensus 337 ~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~ 367 (505)
+.++.+++ +.+-+-+.+.+.+.++.....++
T Consensus 477 ~Lmv~~i~v~l~F~~s~~l~~AYGiAV~~vM~i 509 (852)
T PLN00151 477 FLLVMCLVVVCSFRSITDIGNAYGIAEVGVMMV 509 (852)
T ss_pred HHHHHHHhheeeecCHHHHHHHhhhhhhhhhhH
Confidence 33333333 33556677777777766655555
No 95
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=96.31 E-value=1.6 Score=44.90 Aligned_cols=153 Identities=16% Similarity=0.141 Sum_probs=73.6
Q ss_pred cCCCccchhhHHHHHHHHhcc-CCc--C---------chhhhhhcCc-h------------HHHHHHHHHHHHHHHHHHH
Q 010647 16 KTSPKLTVLPLIALIFYEVSG-GPF--G---------VEDSVKAGGG-P------------LLSLLGFLIFPLIWSIPEA 70 (505)
Q Consensus 16 ~~~r~l~~~~~~~~~~~~i~g-~~~--~---------~~~~~~~~~G-~------------~~~i~~~ii~~~~~~~~~a 70 (505)
+.|.+++.++-+++.+++-+| |+. + .|+.... .+ + -+.+.+|.+.+++ +++.+
T Consensus 70 d~kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~-p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~-~l~~a 147 (485)
T PF02028_consen 70 DAKPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIE-PGSPEAAEWAMAYSFFHWGFHAWAIYALV-GLAIA 147 (485)
T ss_dssp SS--SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-T-TT-HHHHHHHHHHHHHHTSHHHHHHHHHH-HHHHH
T ss_pred CCCCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCC-CCCHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHh
Confidence 356788999999999988877 311 1 1110000 11 0 0234567777764 66666
Q ss_pred HHHHHhhccCCCCCchhHhHHhhhCChhHHHHHHHHHHHhhhhHHHHHHHHH----HHHHHhchhhhhhhhHHHHHHHHH
Q 010647 71 LITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFL----DYLKHSLPIFNLLIARIPALLGIT 146 (505)
Q Consensus 71 ~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 146 (505)
+.+..-.+.+.-+...|-...+...+..|.+.-....++.+...+...-... .-++..+...++...+..+.+++.
T Consensus 148 y~~y~k~~~~~~ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~Gi~~~~~~~~~ii~~~~ 227 (485)
T PF02028_consen 148 YFFYNKGKPLRISSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLSSLFGIPNTFGLQIIIIIVIT 227 (485)
T ss_dssp HHHHTS---SSGGGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSTHHHHHHHHHHHH
T ss_pred eeeeecCCCCchhhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Confidence 6665533322224445555444444555666655555555544443333333 333333332223344444545555
Q ss_pred HHHHHHHHhhh----HHHHHHHHHHHHH
Q 010647 147 GALTYLNYRGL----HIVGFSAVSLLVF 170 (505)
Q Consensus 147 ~~~~~i~~~g~----~~~~~~~~~~~~~ 170 (505)
.+.+.-...|+ |..+++|..+...
T Consensus 228 ~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ 255 (485)
T PF02028_consen 228 VIFTISAVSGLDKGIKRLSNINVYLAFA 255 (485)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 55555555555 4555555554444
No 96
>PLN00150 potassium ion transporter family protein; Provisional
Probab=96.06 E-value=0.83 Score=48.84 Aligned_cols=242 Identities=13% Similarity=0.025 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCc--
Q 010647 113 DNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRR-- 190 (505)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~-- 190 (505)
+.+....+..+=+....|.... .....+++++++.++.+.-+|+...+++---...+=++.+..+.+..+.+.++.-
T Consensus 190 TPAISVLSAVeGL~v~~p~l~~-~~Vv~is~~ILv~LF~iQ~~GT~kVg~~FgPIm~~Wf~~i~~iGiyni~~~~p~Vl~ 268 (779)
T PLN00150 190 TPSISVLSAVVGIKAASSGLDT-NLVTIISCVILVILFSLQRFGTHKVSFLFAPIFLCWFFSLALIGCYNIIKWDKSVFL 268 (779)
T ss_pred ccchhhhhhhccccccCCCCCC-CeehhhHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHHh
Confidence 3333344444444333343322 2234577788888899999998777765433222223333334343333333321
Q ss_pred -cccc------cc-CCcChhHHHHHHHHHhcchHhhhhhhccccCcCcchhHHHHHHHHHHHHH-HHHHHHHHhhccCCC
Q 010647 191 -WLVV------DF-KKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSS-YLIPLLAGTGGLTSL 261 (505)
Q Consensus 191 -~~~~------~~-~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~~~~-y~~~~~~~~~~~~~~ 261 (505)
++|. .. +..+|. .+.+++.+.+|-|+.-. +=-.-.+|.+.+|-..-+.=+.++ |+... +.....|.
T Consensus 269 AlnP~y~~~ff~~~~~~g~~-~LG~V~L~iTGaEALyA--DlGHFg~~~Iriaw~~~V~P~LlL~Y~GQa-A~ll~~p~- 343 (779)
T PLN00150 269 AFNPLYIVSFFIRNGRQGWE-SLGGIVLCMTGTEAMFA--DLGHFTVKSMQIAFTSLVYPCLLLTYLGQA-AYLVKHME- 343 (779)
T ss_pred hcCHHHHHHHHHhCCCceEE-Eecceeeeecchhhhhc--cccCCCccceeeeehhhHHHHHHHHHcchH-HHHhcCcc-
Confidence 1110 00 111222 23455778899997532 222233455545544333333333 33332 22222221
Q ss_pred CcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChh-hhhccC-C-CC-CChHHH-H
Q 010647 262 SSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPA-IFASRS-K-YG-TPTLSI-L 336 (505)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~~-k-~~-~P~~ai-~ 336 (505)
...+|+... .++++.+-+.+.+.++.+-+..+.+.+.--+....-+-|.+|+ +.-+.+ + +| .-+..+ |
T Consensus 344 ---~~~npFf~~----iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw 416 (779)
T PLN00150 344 ---DVNDPFYRS----LPKPIYWPIFVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINW 416 (779)
T ss_pred ---cccCcHHHh----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHH
Confidence 223444333 3334444444444444333333344333334444445689994 233333 2 22 222222 3
Q ss_pred HHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHH
Q 010647 337 CSATGVIFL--SWMSFQEILEFLNFLYAIGMLL 367 (505)
Q Consensus 337 ~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~ 367 (505)
+.++.++++ .+-+-+.+.+.+.++.....++
T Consensus 417 ~Lmv~~i~vv~~F~~s~~l~~AYGiAV~~vM~i 449 (779)
T PLN00150 417 ILMVLCLVITAGFRDTDEIGNAYGIAVVGVMII 449 (779)
T ss_pred HHHHHHHhheEEecChHHHHHHhhhheehhhHH
Confidence 333333333 2456677777777765555555
No 97
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=95.66 E-value=1.5 Score=44.71 Aligned_cols=294 Identities=16% Similarity=0.128 Sum_probs=130.1
Q ss_pred HHHHHHHhhccCCC--CCchhHhH---HhhhCChhHHHHHH-----HHHH-HhhhhHHHHHHHHHHHHHHhchhhhhhhh
Q 010647 69 EALITAELATSFPE--NGGYVIWI---SSAFGPFWGFQEGF-----WKWL-SGVLDNALYPVLFLDYLKHSLPIFNLLIA 137 (505)
Q Consensus 69 ~a~~~~el~s~~P~--~Gg~y~~~---~~~~g~~~g~~~g~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (505)
+..=|.-+..+--+ .||..... .+..+|...++..- +.++ +.+.+.+....+..+=+...-|.+. ..
T Consensus 70 VTiKYv~~vlRADN~GEGGilsL~aL~~~~~~~~~~~l~~~g~iGaalf~GD~vITPAiSVlSAvEGL~iv~p~~~--~~ 147 (627)
T COG3158 70 VTIKYVLFVLRADNNGEGGILSLMALARRAAPRRTALLIILGLIGAALFYGDAVITPAISVLSAVEGLEIVTPALD--PY 147 (627)
T ss_pred HHHhhheeEEecCCCCCchhhhHHHHHHhhcCCCchhhhhHHHHhHHHHhcccccchhHHHHHHhccccccCcccc--Cc
Confidence 44455555555444 58877654 44444443333322 2222 3344445555555444443334333 24
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCCc---cccc----ccCCcChhHH--HH
Q 010647 138 RIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRI--KPRR---WLVV----DFKKVDWRGY--FN 206 (505)
Q Consensus 138 ~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~--~~~~---~~~~----~~~~~~~~~~--~~ 206 (505)
...++++++...+.+...|+...+|+-- -+.++=++.+...++.+. ++.- .+|. .....++.++ +.
T Consensus 148 Vvpitl~IL~~LF~iQ~~GT~~Vg~~FG---PVm~lWF~~l~~~Gl~~i~~~p~IL~AiNP~yAi~fl~~~~~~gf~vLG 224 (627)
T COG3158 148 VVPITLIILVLLFLIQRFGTGRVGKLFG---PVMLLWFLALAVLGLINIIDDPEILRAINPYYAVHFLLEEGFVGFFVLG 224 (627)
T ss_pred cHHHHHHHHHHHHHHhcccchhhhhhhc---cHHHHHHHHHHHHHHHHHhcCHHHHHHhChHHHHHHHHhCCceEEEEee
Confidence 4567778888888999999887776532 222222222223333321 1110 1110 0001122222 23
Q ss_pred HHHHHhcchHhhhhhhccccC-cCcchhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCccccHHHHHHHHhcchHHHHH
Q 010647 207 SMFWNLNYWDKASTLAGEVEN-PSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWW 285 (505)
Q Consensus 207 ~~~~a~~G~e~~~~~~~E~k~-p~~~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (505)
.++.+.+|-|+.-. ++-+ -+|.+-+|-. .+..--++.++.-.+..--.+.....+|+..++ +.+..+-
T Consensus 225 aVfLavTGaEALYA---DmGHfGr~pI~~AWf----~vv~P~L~LNY~GQGA~vL~~p~a~~npFF~~~----P~~aliP 293 (627)
T COG3158 225 AVFLAVTGAEALYA---DMGHFGRKPIRVAWF----FVVLPCLLLNYFGQGALLLSNPEAIGNPFFLLA----PDWALIP 293 (627)
T ss_pred eeeeeeccHHHHHh---hccccCCccHHHHHH----HHHHHHHHHHHccccceeccCcccccCcHHHhC----hhhHHHH
Confidence 35667889887532 2222 2344433332 222223333444333332222233345544433 2233222
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChh-hhhccCC--CC---CChH-HHHHHHHHHHHHHhhhHHHHHHHHH
Q 010647 286 IQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPA-IFASRSK--YG---TPTL-SILCSATGVIFLSWMSFQEILEFLN 358 (505)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~~k--~~---~P~~-ai~~~~~~~~~~~~~~~~~l~~~~~ 358 (505)
+.+.+..+..-+..+.+.++--+..+--|-|.+|+ ...+.++ .| .|.. -+++..+...++.+-.-+.+.+.+.
T Consensus 294 ~viLAT~ATVIASQAvISGaFSLtrQAi~Lg~lPrm~I~~TSe~~~GQIYiP~VN~~L~~~V~~~vl~F~~S~~LAaAYG 373 (627)
T COG3158 294 LVILATAATVIASQAVISGAFSLTRQAIRLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVFVVLGFGSSSNLAAAYG 373 (627)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHHhCCCCceEEEecCCcccceEEehHHHHHHHHHHhheeeEecChHHHHHhhC
Confidence 22222222222222222222222233346699994 2333332 22 4443 3344444444544556677777777
Q ss_pred HHHHHHHHHHHHH-HHHHHhh
Q 010647 359 FLYAIGMLLEFAA-FIKLRIK 378 (505)
Q Consensus 359 ~~~~~~~~~~~~~-~~~~r~~ 378 (505)
+.......++.+. ....|++
T Consensus 374 iAVTgtM~iTt~L~~~~~~~~ 394 (627)
T COG3158 374 IAVTGTMVITTILLTVVMRKK 394 (627)
T ss_pred hheeehhHHHHHHHHHHHHHh
Confidence 6665555554433 3444443
No 98
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=95.01 E-value=0.086 Score=35.40 Aligned_cols=49 Identities=27% Similarity=0.354 Sum_probs=38.9
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010647 386 YKVPLQTFGVTMLCLLPAVLLVLVMCLASLRTFIVSGGVIIVGFLLYPVLVHA 438 (505)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 438 (505)
||.|.-| ++..++++...+.+...+..+++...+|+++|+++|+.+.++
T Consensus 1 F~vP~vP----~~P~~si~~ni~Lm~~L~~~twirf~iWl~iGl~iYf~YG~~ 49 (51)
T PF13906_consen 1 FKVPLVP----FLPALSILINIYLMAQLSALTWIRFGIWLAIGLVIYFGYGIR 49 (51)
T ss_pred CCCCccc----HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHheeee
Confidence 4556555 445666778888888889999999999999999999887554
No 99
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=94.97 E-value=4.5 Score=42.47 Aligned_cols=96 Identities=11% Similarity=0.205 Sum_probs=51.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccC---------CcccccccCCcChhHHHHHHHHHhc-chHhh
Q 010647 149 LTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKP---------RRWLVVDFKKVDWRGYFNSMFWNLN-YWDKA 218 (505)
Q Consensus 149 ~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~a~~-G~e~~ 218 (505)
......+|+|..+|+......+-.+.++++.+-++...+. .++... .++.-|...+..++|+++ |+...
T Consensus 191 v~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l-~~~~vW~~A~~Q~ffsl~ig~G~~ 269 (523)
T PF00209_consen 191 VFFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKL-LDPKVWIAALGQVFFSLSIGFGIM 269 (523)
T ss_dssp HTTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGT-TSHHHHHHHHHHHHHHTTTTSSHH
T ss_pred HHHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchh-hHHHHHHHHHHHHhhccCCCcceE
Confidence 4444567899999887766544333333333333321110 111111 112346666667777766 88888
Q ss_pred hhhhccccCcCcchhHHHHHHHHHHHHH
Q 010647 219 STLAGEVENPSKTFPKALLGAVVLVVSS 246 (505)
Q Consensus 219 ~~~~~E~k~p~~~ip~ai~~~~~~~~~~ 246 (505)
..++.-.|+ ++|++|............
T Consensus 270 it~~Sy~~~-~~n~~~~a~~v~~~~~~~ 296 (523)
T PF00209_consen 270 ITYGSYNKF-KNNIFRDALIVAFINTLV 296 (523)
T ss_dssp HHHHTTS-T-TS-SHHHHHHHHHHHHHH
T ss_pred EEEcCcCCC-CccccccceEEEcCchhh
Confidence 888887777 677777665555444443
No 100
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=94.87 E-value=0.63 Score=44.37 Aligned_cols=236 Identities=15% Similarity=0.117 Sum_probs=131.5
Q ss_pred cCCCccchhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCch-------
Q 010647 16 KTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSF-PENGGY------- 86 (505)
Q Consensus 16 ~~~r~l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~-P~~Gg~------- 86 (505)
+-+.|++-|+...-.-..+=| -+.++|..+-. +|. +.+.+.+.++.++. -++-.+.|. .| |..-|.
T Consensus 112 e~~~kI~a~qAaWNVTNAIQGMFivgLP~Avlh-GGy-w~i~amvg~A~vCc-yTGk~Li~C--LYE~~~dGevVrvRds 186 (524)
T KOG4303|consen 112 EASEKISALQAAWNVTNAIQGMFIVGLPIAVLH-GGY-WSIGAMVGVAYVCC-YTGKLLIEC--LYENGEDGEVVRVRDS 186 (524)
T ss_pred CCCCccHHHHHhhhhhhhhheeeEeccceeeeE-cch-hHHHHHHhhhhhhh-ccchhhhhh--hccCCCCCcEEEeehh
Confidence 455788888887665544444 25578877766 665 44444444443211 122222221 11 222232
Q ss_pred hHhHHhh-hCChhH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhh-hhhhHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 010647 87 VIWISSA-FGPFWG-FQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFN-LLIARIPALLGITGALTYLNYRGLHIVGFS 163 (505)
Q Consensus 87 y~~~~~~-~g~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 163 (505)
|.=..+. ++|.+| -.+.-+.++....++..+....++.++..+|... ..-.+.++..+.++-+.++ ...|...|+
T Consensus 187 YvaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd~~sWm~i~~a~LLpc~FL--k~Lk~VS~l 264 (524)
T KOG4303|consen 187 YVAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVDKASWMMITSASLLPCSFL--KDLKIVSRL 264 (524)
T ss_pred HHHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCccccchhhhhhHHHhhhHHH--HHHHHHHHH
Confidence 3333333 677765 5566677777788888888888999999898553 2223444444555555544 455778888
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCcccc--cccCCcChhHHHHHHHHHhcchHhhhhhhccccCcCcchhHHHHHHHH
Q 010647 164 AVSLLVFSLCPFVVMGILSIPRIKPRRWLV--VDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVV 241 (505)
Q Consensus 164 ~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~ 241 (505)
....++.+++.-++++..-+.....-.|.. +..+-..+......++|+|+.---.+++-+.++||.+ +-.-+-++-+
T Consensus 265 Sf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~-Fn~Ml~WsHI 343 (524)
T KOG4303|consen 265 SFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQ-FNVMLKWSHI 343 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhH-heeeeehHHH
Confidence 777777776654444443332221111111 1111001111112246788888888899999999965 4455667777
Q ss_pred HHHHHHHHHHHHHhhccC
Q 010647 242 LVVSSYLIPLLAGTGGLT 259 (505)
Q Consensus 242 ~~~~~y~~~~~~~~~~~~ 259 (505)
...++=.+..........
T Consensus 344 AAaVfK~~Fg~~~fLTf~ 361 (524)
T KOG4303|consen 344 AAAVFKVVFGMLGFLTFG 361 (524)
T ss_pred HHHHHHHHHHHheeeeec
Confidence 777776555555444343
No 101
>PRK09950 putative transporter; Provisional
Probab=93.44 E-value=11 Score=39.04 Aligned_cols=19 Identities=16% Similarity=0.354 Sum_probs=16.5
Q ss_pred CCccchhhHHHHHHHHhcc
Q 010647 18 SPKLTVLPLIALIFYEVSG 36 (505)
Q Consensus 18 ~r~l~~~~~~~~~~~~i~g 36 (505)
|.+++.++-+++.+++-+|
T Consensus 81 kPefS~~sW~aMlf~aG~G 99 (506)
T PRK09950 81 KPEYSTLSWLFMFICAGLG 99 (506)
T ss_pred CCCccchhHHHHHHHHhhh
Confidence 7899999999998887777
No 102
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=92.60 E-value=11 Score=36.81 Aligned_cols=278 Identities=11% Similarity=0.020 Sum_probs=137.0
Q ss_pred CCCccchhhHHHHHHHHhcc--CCcCchhhhhhcCchHHHHHHHHHHHHHH--HHHHHHHHHHhhccCCCCCchhHhH-H
Q 010647 17 TSPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPLLSLLGFLIFPLIW--SIPEALITAELATSFPENGGYVIWI-S 91 (505)
Q Consensus 17 ~~r~l~~~~~~~~~~~~i~g--~~~~~~~~~~~~~G~~~~i~~~ii~~~~~--~~~~a~~~~el~s~~P~~Gg~y~~~-~ 91 (505)
-.|+++.+-+.+...++=++ +..+-|+.... -|-.|.+++.+=.-... -...+--++.+++++-. =-...+. +
T Consensus 37 gnRsmgg~VlAmt~~aTYisaSSFigGpgaayk-~GlgwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nA-ltI~D~l~~ 114 (473)
T COG4145 37 GNRSMGGIVLAMTFTATYISASSFIGGPGAAYK-YGLGWVLLAMIQVPTVWLALGVLGKKFAILAREYNA-LTINDLLFA 114 (473)
T ss_pred ccCcccceehhhHHHHHHHHHhhhcCCCcHHHH-hchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCC-eeHHHHHHH
Confidence 46888887766655544444 22344444444 44444333332211100 00012223334433322 1222333 3
Q ss_pred hhhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHH
Q 010647 92 SAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHI---VGFSAVSLL 168 (505)
Q Consensus 92 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~---~~~~~~~~~ 168 (505)
|.-+++.-|+.+....+.......++..+.+..+...... ++.+-+.... ..+...-..-|-|. ...+|-...
T Consensus 115 RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gi---dY~tgL~ifa-~~V~iYt~fGGFRAvvltD~IQG~vm 190 (473)
T COG4145 115 RYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGI---DYTTGLLIFA-VSVAIYTAFGGFRAVVLTDTIQGLVM 190 (473)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCC---CchhhHHHHH-HHHHHHHhhcceeeeehHHHHHHHHH
Confidence 4457889999999999998888889999988888776642 2222221111 11122233345554 344444333
Q ss_pred HHHHHHHHHHHHHHhcc-------------ccCCcccccccCC----cChhHHHHHHHHHhcchHhhhhhhccccCcCcc
Q 010647 169 VFSLCPFVVMGILSIPR-------------IKPRRWLVVDFKK----VDWRGYFNSMFWNLNYWDKASTLAGEVENPSKT 231 (505)
Q Consensus 169 ~~~i~~~~~~~i~~~~~-------------~~~~~~~~~~~~~----~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~~~ 231 (505)
.+ ..+++.+..+.. .+++-..|.+.+. .-..++...+.++-.|.--.+.-.-..|| +|.
T Consensus 191 li---gtv~Lf~~~i~~~GG~~~av~tl~~iDp~lv~P~~~~~~l~~~Fm~Sfwilv~~gvlglP~t~vr~ia~kD-ska 266 (473)
T COG4145 191 LI---GTVVLFVGVIYAGGGLSNAVETLTTIDPGLVTPQGADDILDPPFMASFWILVCFGVLGLPHTAVRCIAFKD-SKA 266 (473)
T ss_pred HH---HHHHHHHHHHHhccCHHHHHHHHHhCCccccCCCCCcccccchHHHHHHHHHHHHHhcCcHHHHHHHhccc-hhH
Confidence 22 222222222211 1222222222111 00111222223344444433333344577 688
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh---hccCCCCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010647 232 FPKALLGAVVLVVSSYLIPLLAGT---GGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDA 306 (505)
Q Consensus 232 ip~ai~~~~~~~~~~y~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 306 (505)
+.++++++.++++++.+.+-.+-. .++| ++...+.....++.+..+|...-++....+-+..++.++.+.-.|
T Consensus 267 ih~gmiigt~vi~il~~gmhl~G~~graViP--dlt~~D~Vip~lalkvlpp~~agifl~apmaAiMSTIds~L~~~s 342 (473)
T COG4145 267 IHRGMIIGTIVIAILMLGMHLAGALGRAVIP--DLTVVDLVIPTLALKVLPPFAAGIFLAAPMAAIMSTINSQLLQSS 342 (473)
T ss_pred HhcCcchHHHHHHHHHHHHHHhhhhhhhhcC--CCCccchhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988887665554422 2233 244456667778888887766655555444455555555444433
No 103
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=92.29 E-value=14 Score=37.35 Aligned_cols=191 Identities=11% Similarity=0.034 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhH-hHHhhhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhh
Q 010647 54 SLLGFLIFPLIWSIPEALITAELATSFPENGGYVI-WISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIF 132 (505)
Q Consensus 54 ~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~-~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (505)
...+|..+-.+ ..+..+|--+.+-+- ..-+ .+.|.-.+..-++.+..-.+........+....+..+..++..
T Consensus 79 Y~iG~~~Gy~i----~~fL~A~~LRk~Gky-T~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv- 152 (529)
T COG4147 79 YSIGWTGGYPI----LLFLIAEYLRKLGKY-TFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGV- 152 (529)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHhcCCc-chHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCC-
Confidence 45666665554 355566665555432 1222 3445556778888888777777777778888888888777652
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCCc----------------cccc
Q 010647 133 NLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRI--KPRR----------------WLVV 194 (505)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~--~~~~----------------~~~~ 194 (505)
+. ...+.++..+......+-|.|...+.|.+=.++.+...++..+....+. ++.. ..+.
T Consensus 153 --~~-~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p 229 (529)
T COG4147 153 --PY-HVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEP 229 (529)
T ss_pred --Cc-eeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCC
Confidence 11 1222233334444455556665555444333333322222222221111 1110 0011
Q ss_pred ccCCcChhHHHHHHHHHhcchHhhhhhhccc-cCc-CcchhHHHHHHHHHHHHHHHHHHHH
Q 010647 195 DFKKVDWRGYFNSMFWNLNYWDKASTLAGEV-ENP-SKTFPKALLGAVVLVVSSYLIPLLA 253 (505)
Q Consensus 195 ~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~-k~p-~~~ip~ai~~~~~~~~~~y~~~~~~ 253 (505)
.....++..++.-.+--+.|.-..+|.--.. --| .|+..|+..+++..++.+|+..-+.
T Consensus 230 Gl~~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~i 290 (529)
T COG4147 230 GLLYKDPIDFISLGFALMVGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILTPII 290 (529)
T ss_pred CCcccCHHHHHHHHHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112234444444333345666666654221 112 2556677888899999999876654
No 104
>PRK09928 choline transport protein BetT; Provisional
Probab=88.29 E-value=40 Score=36.18 Aligned_cols=91 Identities=9% Similarity=0.040 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhccCCCCCChHHHHHHHHHHHHHHhhhH---HHHHHHHHH
Q 010647 283 KWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWMSF---QEILEFLNF 359 (505)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~k~~~P~~ai~~~~~~~~~~~~~~~---~~l~~~~~~ 359 (505)
..++.+..++..+....+...+++-++-.++-+|.-|+- .-++...=.+++.+..+...++...++ .....+..+
T Consensus 408 ~~i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~~~--~pp~~~RifW~v~ig~la~~LL~~GGL~aLQt~sii~al 485 (679)
T PRK09928 408 FTFSASVATITGLLFYVTSADSGALVLGNFTSKLKDINS--DAPNWLRVFWSVAIGLLTLGMLMTNGISALQNTTVIMGL 485 (679)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHcCCCCCCC--CCCcceeeHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 334444444444444455555666666666655432210 111222334455444444433333334 444444455
Q ss_pred HHHHHHHHHHHHHHHH
Q 010647 360 LYAIGMLLEFAAFIKL 375 (505)
Q Consensus 360 ~~~~~~~~~~~~~~~~ 375 (505)
.+.+..++.+.+.++.
T Consensus 486 Pf~~I~ll~~~sl~k~ 501 (679)
T PRK09928 486 PFSFVIFFVMAGLYKS 501 (679)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555566665554
No 105
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=87.46 E-value=31 Score=33.92 Aligned_cols=52 Identities=15% Similarity=0.031 Sum_probs=37.8
Q ss_pred HHHhcchHh---hhhhhccccCcCcchhHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 010647 209 FWNLNYWDK---ASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSL 261 (505)
Q Consensus 209 ~~a~~G~e~---~~~~~~E~k~p~~~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 261 (505)
+=+.+||-+ ...+++..+| +|+..+--..+++.=+++-++...+.....+.+
T Consensus 297 CGAiSGFHsLv~SgttsKql~~-E~d~r~VgYGaMl~Eg~lAli~~~a~~~~~~~~ 351 (376)
T PF02554_consen 297 CGAISGFHSLVSSGTTSKQLDK-EKDARPVGYGAMLTEGFLALIWLAAAMAFFPGD 351 (376)
T ss_pred hhhhcchhhhhcCCCcHhhHhc-ccccceeehhHHHHHHHHHHHHHHHHHHhcccc
Confidence 456778876 4566777776 788877788888888888877777777666544
No 106
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=87.10 E-value=40 Score=34.93 Aligned_cols=150 Identities=9% Similarity=0.052 Sum_probs=69.9
Q ss_pred CCccchhhHHHHHHHHhcc-CCc--C---------chhhhhhcCc-h------------HHHHHHHHHHHHHHHHHHHHH
Q 010647 18 SPKLTVLPLIALIFYEVSG-GPF--G---------VEDSVKAGGG-P------------LLSLLGFLIFPLIWSIPEALI 72 (505)
Q Consensus 18 ~r~l~~~~~~~~~~~~i~g-~~~--~---------~~~~~~~~~G-~------------~~~i~~~ii~~~~~~~~~a~~ 72 (505)
|.+++.++-+++.+++-+| |+. + .|+ .....+ + -+-+-+|.+.+++ +++.+
T Consensus 83 kPefs~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~PP-~g~e~~s~~A~~~A~~~~~fHWG~~aWaiY~~~-~la~a-- 158 (504)
T PRK03356 83 KPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPP-FGLEPNSTGAKELGLAYSLFHWGPLPWATYSFL-SVAFG-- 158 (504)
T ss_pred CCCccchHHHHHHHHHhhhhhhhhhhhhhHHHHcCCCC-CCCCCCcHHHHHHHHHHHHHHhcHHHHHHHHHH-HHHHH--
Confidence 7889999999998887777 311 1 111 000011 0 0234567777664 55444
Q ss_pred HHHhhccCCC---CCchhHhHH-hhhCChhHHHHHHHHHHHhhhhHHHHHH----HHHHHHHHhchhhhhhhhHHHHHHH
Q 010647 73 TAELATSFPE---NGGYVIWIS-SAFGPFWGFQEGFWKWLSGVLDNALYPV----LFLDYLKHSLPIFNLLIARIPALLG 144 (505)
Q Consensus 73 ~~el~s~~P~---~Gg~y~~~~-~~~g~~~g~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (505)
|....+..|. +...|-... |...+.+|-+.-....++.+...+...- .++.-++++++..++...+..+.++
T Consensus 159 y~~y~~~~p~l~iss~~~pllG~~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~~~~~~~~ii~~ 238 (504)
T PRK03356 159 YFFFVRKMDVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITC 238 (504)
T ss_pred HHHHhcCCCcccHHHHHHHHcCCCcccCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCchHHHHHHHHH
Confidence 4455556663 333333332 1122334555554444444444433333 3333334444322222233333333
Q ss_pred HHHHHHHHHH----hhhHHHHHHHHHHHHHH
Q 010647 145 ITGALTYLNY----RGLHIVGFSAVSLLVFS 171 (505)
Q Consensus 145 ~~~~~~~i~~----~g~~~~~~~~~~~~~~~ 171 (505)
+..+++.-.+ +|+|...++|..+....
T Consensus 239 i~~if~~S~~~Gl~kGIk~LS~~N~~la~~l 269 (504)
T PRK03356 239 WIILNAICVACGLQKGVRIASDVRSYLSFLM 269 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444 45566666666655443
No 107
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=87.08 E-value=12 Score=37.58 Aligned_cols=46 Identities=20% Similarity=0.201 Sum_probs=27.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHhcCCChhhhhccCCCCCChHHHHHHHHHHHHHHh
Q 010647 294 NLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSW 347 (505)
Q Consensus 294 ~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~k~~~P~~ai~~~~~~~~~~~~ 347 (505)
..++.....++.|+.+..+=-|+.=|+.|-- -.++++.++.+++.+
T Consensus 68 ~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~--------~gLilsai~nil~Gf 113 (448)
T COG2271 68 ILGSAFSITYGVSKFVMGVLSDRSNPRYFMA--------FGLILSAIVNILFGF 113 (448)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCceeeh--------HHHHHHHHHHHHHhh
Confidence 3444455567788888877777775544421 235566666666543
No 108
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=85.16 E-value=50 Score=34.15 Aligned_cols=153 Identities=18% Similarity=0.200 Sum_probs=73.8
Q ss_pred cCCCccchhhHHHHHHHHhcc-CCc--Cchhhhhhc-----Cch----------------HHHHHHHHHHHHHHHHHHHH
Q 010647 16 KTSPKLTVLPLIALIFYEVSG-GPF--GVEDSVKAG-----GGP----------------LLSLLGFLIFPLIWSIPEAL 71 (505)
Q Consensus 16 ~~~r~l~~~~~~~~~~~~i~g-~~~--~~~~~~~~~-----~G~----------------~~~i~~~ii~~~~~~~~~a~ 71 (505)
+-|.+++.++-++|-++.=+| +.. +..-.+... ++. -+-+.+|.+-+++ ++ ++
T Consensus 83 ~~~PEfs~~SW~aMLFaAGmGigl~fwgvaEp~~~y~~pp~~~~~~t~~A~~~Al~~tffHWG~~~WaiY~lv-al--al 159 (537)
T COG1292 83 DEKPEFSTLSWLAMLFAAGMGIGLLFWGVAEPVYYYATPPPGAEPNTTEAAEQALAYTFFHWGLHAWAIYALV-AL--AL 159 (537)
T ss_pred CCCCCcchhHHHHHHHHcccCceeeEeechhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhchHHHHHHHHH-HH--Hh
Confidence 356678888888888877666 321 211111000 000 0234566666653 33 22
Q ss_pred HHHHhhccCCCC--CchhHhHHhhhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHH----hchhhhhhhhHHHHHHHH
Q 010647 72 ITAELATSFPEN--GGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKH----SLPIFNLLIARIPALLGI 145 (505)
Q Consensus 72 ~~~el~s~~P~~--Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 145 (505)
.|-...+..|.. ...|--..+.-...+|..+-...+++.+...+......+.-++. ++...++.+.+..+.+++
T Consensus 160 aYf~~rk~~pl~lss~l~Pllg~~~~G~~G~~IDi~aiiaTl~GiATsLG~ga~qi~~Gl~~l~gip~~~~~q~~iI~vi 239 (537)
T COG1292 160 AYFHYRKGLPLLLSSALYPLLGERIKGPIGHAVDILAIIATLFGIATSLGLGALQLTAGLSYLFGIPNSFAVQAIIIAVI 239 (537)
T ss_pred heeeEecCCCchhhhhhhhhhcccccCccchhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 232233333332 22333332223345667777777777776666555555544443 332223344444444444
Q ss_pred HHHHHHHHHh----hhHHHHHHHHHHHHHH
Q 010647 146 TGALTYLNYR----GLHIVGFSAVSLLVFS 171 (505)
Q Consensus 146 ~~~~~~i~~~----g~~~~~~~~~~~~~~~ 171 (505)
..+++.-... |+|...++|..+....
T Consensus 240 ~~~~~~S~~sGv~KGIr~LS~~n~~la~~l 269 (537)
T COG1292 240 TALFTISVWSGLDKGIRVLSNINMVLAFLL 269 (537)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4444444444 4566666665555443
No 109
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=84.28 E-value=24 Score=34.66 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=24.0
Q ss_pred hhhhhccccCcCc----chhHHHHHHHHHHHHHHHHHHHHHh
Q 010647 218 ASTLAGEVENPSK----TFPKALLGAVVLVVSSYLIPLLAGT 255 (505)
Q Consensus 218 ~~~~~~E~k~p~~----~ip~ai~~~~~~~~~~y~~~~~~~~ 255 (505)
....++++.++++ ..|+|+..+++.+.-.-.+...+..
T Consensus 28 L~~~~~~ig~~~~D~~~~T~~al~~tll~alp~pl~~~~~g~ 69 (340)
T PF12794_consen 28 LERIAKRIGKVRQDSFSHTPRALLLTLLLALPLPLLLLAIGY 69 (340)
T ss_pred HHHHHHHcCCccCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555544 4999999999887766554444433
No 110
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=84.20 E-value=14 Score=32.03 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=10.4
Q ss_pred CCCCChH-----HHHHHHHHHHHHH
Q 010647 327 KYGTPTL-----SILCSATGVIFLS 346 (505)
Q Consensus 327 k~~~P~~-----ai~~~~~~~~~~~ 346 (505)
|+.-|.. ++++..+++++-.
T Consensus 89 kNtdp~lm~lDssLl~lg~~aLlsg 113 (226)
T COG4858 89 KNTDPWLMWLDSSLLFLGAMALLSG 113 (226)
T ss_pred cCCCceEEEecccHHHHHHHHHHHH
Confidence 4455553 4556555555444
No 111
>COG4146 Predicted symporter [General function prediction only]
Probab=79.38 E-value=67 Score=31.56 Aligned_cols=45 Identities=7% Similarity=-0.215 Sum_probs=34.9
Q ss_pred hhHhHHhhhCChhHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhch
Q 010647 86 YVIWISSAFGPFWGFQEGFWKWLSGV-LDNALYPVLFLDYLKHSLP 130 (505)
Q Consensus 86 ~y~~~~~~~g~~~g~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 130 (505)
...|.++-+.+..--+...+..++|. +..+...++.+-.+++.++
T Consensus 105 IPdFlE~RfD~~TR~Iis~lFLi~y~~~flPtvLYsGAla~nsiF~ 150 (571)
T COG4146 105 IPDFLEERFDKTTRMIISFLFLIAYGVCFLPTVLYSGALALNSIFH 150 (571)
T ss_pred chHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHhhhhc
Confidence 56788888999888888888877655 4667777888877777764
No 112
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=78.83 E-value=24 Score=31.84 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHhhc
Q 010647 425 IIVGFLLYPVLVHAKD 440 (505)
Q Consensus 425 ~~~g~~~~~~~~~~~~ 440 (505)
+++|.+.+..+++.|+
T Consensus 184 iiig~i~~~~~~~lkk 199 (206)
T PF06570_consen 184 IIIGVIAFALRFYLKK 199 (206)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 113
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=77.87 E-value=1e+02 Score=32.97 Aligned_cols=87 Identities=13% Similarity=0.088 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCc-----ccc---cccCCcChhHHHHHHHHH
Q 010647 140 PALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRR-----WLV---VDFKKVDWRGYFNSMFWN 211 (505)
Q Consensus 140 ~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~a 211 (505)
+.-.+..+++.++-++|+|.+||+..+...+-.+.++++.+-++.-.+... +.+ .-.++.-|......++++
T Consensus 218 ~~l~~~Wliv~~~i~KGvks~GKvvY~~a~fPyviL~iLliRgvTL~Ga~~Gi~~~l~~~~~kL~~~~vW~dA~~QiffS 297 (629)
T KOG3660|consen 218 LCLALAWLIVFFCIWKGVKSSGKVVYFTATFPYVILIVLLIRGVTLPGAGDGINFYLTPDWTKLLDPQVWGDAATQIFFS 297 (629)
T ss_pred HHHHHHHHHHHHHHhhcccccCcEEEEEehhHHHHHHHHHHHHccCCCHHHHHHHHHhhhhHhhcChhhHHHHHHhHHHh
Confidence 333344445677788999999998877766665555555554443222111 011 011234566666666776
Q ss_pred hc-chHhhhhhhcccc
Q 010647 212 LN-YWDKASTLAGEVE 226 (505)
Q Consensus 212 ~~-G~e~~~~~~~E~k 226 (505)
++ |+.....++.-.|
T Consensus 298 lsi~~G~li~laSynk 313 (629)
T KOG3660|consen 298 LSIGFGGLIALASYNK 313 (629)
T ss_pred HHHHHhhhheeeeeec
Confidence 55 5555555555443
No 114
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=76.80 E-value=49 Score=34.04 Aligned_cols=18 Identities=17% Similarity=0.143 Sum_probs=9.4
Q ss_pred ccccCc-----CcchhHHHHHHH
Q 010647 223 GEVENP-----SKTFPKALLGAV 240 (505)
Q Consensus 223 ~E~k~p-----~~~ip~ai~~~~ 240 (505)
-+.||| .++.|+-.+.+.
T Consensus 186 v~wkNpyGyL~a~~~Plm~fy~~ 208 (518)
T KOG2568|consen 186 VNWKNPYGYLPASDAPLMPFYGF 208 (518)
T ss_pred EEEECCCCCcChhhcccchHHHH
Confidence 345666 355555554444
No 115
>COG4025 Predicted membrane protein [Function unknown]
Probab=73.75 E-value=54 Score=29.71 Aligned_cols=16 Identities=6% Similarity=0.056 Sum_probs=12.7
Q ss_pred hhhHHHHHHHhcCCCh
Q 010647 304 GDAFQLLGMSEMGMLP 319 (505)
Q Consensus 304 ~~sR~l~a~a~dg~lP 319 (505)
+.-|-...+.||+.+|
T Consensus 55 ~~ve~v~e~~re~~i~ 70 (284)
T COG4025 55 SKVEKVMEKVREFQIP 70 (284)
T ss_pred HHHHHHHHHHhcCCCc
Confidence 4557778999999987
No 116
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=69.97 E-value=1.2e+02 Score=30.11 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=12.1
Q ss_pred hccccCcCcchhHHHHHHHHHH
Q 010647 222 AGEVENPSKTFPKALLGAVVLV 243 (505)
Q Consensus 222 ~~E~k~p~~~ip~ai~~~~~~~ 243 (505)
.++-||-+|.+-.++....++=
T Consensus 205 ~~~~k~i~raii~g~~i~~~lY 226 (381)
T TIGR00837 205 DGNVKKVKKSILIGSAIALVLY 226 (381)
T ss_pred ccCHHHHHHHHHHHHHHHHHHH
Confidence 3445565666666665555443
No 117
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=69.68 E-value=1.2e+02 Score=30.16 Aligned_cols=72 Identities=15% Similarity=0.090 Sum_probs=53.3
Q ss_pred HhHHhhhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 010647 88 IWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFS 163 (505)
Q Consensus 88 ~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 163 (505)
..+++.+|+.-+.+.+-...+++..+......++++|++.++|. .++..++ +...+....+...|....-++
T Consensus 259 ~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k--~~y~~~v--~~~~l~s~~ia~~Gl~~Ii~~ 330 (378)
T TIGR00796 259 AYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK--LSYKTWV--IVFTLFSFIVANLGLTQIISI 330 (378)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCHHHHH--HHHHHHHHHHHHhCHHHHHHH
Confidence 56788999999999999999999999999999999999998763 2333333 344445555555676655444
No 118
>PRK11056 hypothetical protein; Provisional
Probab=66.17 E-value=67 Score=25.73 Aligned_cols=17 Identities=12% Similarity=0.045 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHhhC
Q 010647 363 IGMLLEFAAFIKLRIKK 379 (505)
Q Consensus 363 ~~~~~~~~~~~~~r~~~ 379 (505)
++.+...++...+.+|+
T Consensus 39 FPlIaLvLavycLyQ~Y 55 (120)
T PRK11056 39 FPLIALVLAVYCLHQRY 55 (120)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444454444
No 119
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=65.92 E-value=1.2e+02 Score=28.62 Aligned_cols=94 Identities=14% Similarity=0.051 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhccCCCCCChHHHHHHHHHHHHHHhhh------HHHHHHHHHHHH
Q 010647 288 AASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWMS------FQEILEFLNFLY 361 (505)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~k~~~P~~ai~~~~~~~~~~~~~~------~~~l~~~~~~~~ 361 (505)
....+..+.........+.|.+ .|.|.-.+.+.+.++.+-|.+.++...+..++..... .+.+..-.....
T Consensus 163 ~~~~i~~~~~~~~~~~l~~~il---~r~~~~~~~~~~~~~~~lP~~~~~~~i~~~~~~l~~~~~~~~~~~~i~~Nl~~v~ 239 (290)
T PF09991_consen 163 ALLIISALLMSLINYYLARRIL---RRLGIPIPPLPPFREWRLPRWLIWLLIVALALSLVGGGFGGSWLQIIGLNLLIVL 239 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHcCCCCCCCCchHHHhCcHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 3333333333333334444544 3444332334444567889998877766555444321 123333334455
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCC
Q 010647 362 AIGMLLEFAAFIKLRIKKPDLHR 384 (505)
Q Consensus 362 ~~~~~~~~~~~~~~r~~~~~~~~ 384 (505)
...|.+..++.+...-++++.++
T Consensus 240 ~~l~~~qGla~~~~~~~~~~~~~ 262 (290)
T PF09991_consen 240 SFLFFIQGLAVIHFFLKRRKMSK 262 (290)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcH
Confidence 55666777777665555444333
No 120
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=64.91 E-value=1.9e+02 Score=30.56 Aligned_cols=102 Identities=13% Similarity=-0.010 Sum_probs=51.3
Q ss_pred CCccchhhHHHHHHHHhccC--CcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--CchhHhHHhh
Q 010647 18 SPKLTVLPLIALIFYEVSGG--PFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPEN--GGYVIWISSA 93 (505)
Q Consensus 18 ~r~l~~~~~~~~~~~~i~g~--~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~--Gg~y~~~~~~ 93 (505)
-|++.+|..-+--+++-+++ ..+++...++ .|-....+.|..... .. .+++ .....|-++ ...|.|.+.-
T Consensus 44 gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~-~G~~~~~~~~~~l~~--~~--~~~~-~f~Pvf~~~~v~~~~eYl~~R 117 (585)
T KOG2349|consen 44 GRSMVWLPVAASLFASNISSVHFLGLPGEGYA-YGIQYWFFEWNALLS--VL--LLGW-IFIPVFYRLGVTTMYEYLEKR 117 (585)
T ss_pred CCcceEEEeehhhhhhhhcceeeecCchHHHH-HHHHHHHHHHHHHHH--HH--hhhe-EEEEEEEecCeeehhHHHHHH
Confidence 47788877776666666664 4577777666 554332222222111 11 2222 122222222 4578999999
Q ss_pred hCChhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 010647 94 FGPFWGFQEGFWKWLSGVLDNALYPVLFLDYL 125 (505)
Q Consensus 94 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 125 (505)
|++....+....+.+......+...+.-+..+
T Consensus 118 f~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~ 149 (585)
T KOG2349|consen 118 FGGRVRYLATLSFILMIFLYLPVDMYAPALAI 149 (585)
T ss_pred hcccchhhHHHHHHHHHHhheeeeEeehHHHH
Confidence 99884444444444444333333333333333
No 121
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=62.05 E-value=1.9e+02 Score=29.61 Aligned_cols=19 Identities=26% Similarity=0.590 Sum_probs=15.6
Q ss_pred CCccchhhHHHHHHHHhcc
Q 010647 18 SPKLTVLPLIALIFYEVSG 36 (505)
Q Consensus 18 ~r~l~~~~~~~~~~~~i~g 36 (505)
|.+++.++-+++.+++-+|
T Consensus 34 kPefS~~sW~aMlf~aG~G 52 (453)
T TIGR00842 34 KPEFSTLSWLAMLFAAGMG 52 (453)
T ss_pred CCCCcchHHHHHHHHHhhh
Confidence 5788888988888877777
No 122
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=61.26 E-value=1.9e+02 Score=29.35 Aligned_cols=73 Identities=12% Similarity=0.034 Sum_probs=55.7
Q ss_pred HhHHhhhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 010647 88 IWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSA 164 (505)
Q Consensus 88 ~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 164 (505)
..+++.+|+.-..+.+-+..+++..+......++++|++..++ ..++.. +..++.++...+...|....-++.
T Consensus 265 ~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~--kisY~~--~v~i~~i~S~~ian~Gl~~Ii~~s 337 (427)
T PF05525_consen 265 QIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFP--KISYKV--WVIIFTIFSFIIANLGLDQIIKIS 337 (427)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccChHH--HHHHHHHHHHHHHHhCHHHHHHHH
Confidence 4667789999999999999999999999999999999999888 223333 333555667777778876544443
No 123
>PTZ00206 amino acid transporter; Provisional
Probab=60.71 E-value=1.5e+02 Score=30.67 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=44.9
Q ss_pred cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhh
Q 010647 268 GYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFA 323 (505)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~ 323 (505)
..+.++.+...|++..+++.+...+..+++..+++......+...-++...|+++.
T Consensus 121 ~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~ 176 (467)
T PTZ00206 121 RTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLK 176 (467)
T ss_pred CCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 35889999999999999999999999999999999988888776655444455554
No 124
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function.
Probab=59.63 E-value=2.1e+02 Score=29.21 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=22.0
Q ss_pred hhhhccC-CCCCChHHHHHHHHHHHHHHhhhH
Q 010647 320 AIFASRS-KYGTPTLSILCSATGVIFLSWMSF 350 (505)
Q Consensus 320 ~~~~~~~-k~~~P~~ai~~~~~~~~~~~~~~~ 350 (505)
+.+.|+- .-++|..|+.+..+++.+.++++.
T Consensus 82 r~l~~lA~~p~t~~~Ai~lv~~vs~i~s~inW 113 (453)
T PF02667_consen 82 RLLDRLASLPKTPRQAIVLVALVSMIASWINW 113 (453)
T ss_pred HHHHHHHhcCCCCcceeeHHHHHHHHHHHHHh
Confidence 3444444 357899999998888888776654
No 125
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=58.06 E-value=95 Score=24.78 Aligned_cols=13 Identities=15% Similarity=-0.130 Sum_probs=5.6
Q ss_pred HHHHHHHHHHhhC
Q 010647 367 LEFAAFIKLRIKK 379 (505)
Q Consensus 367 ~~~~~~~~~r~~~ 379 (505)
...++...+.+++
T Consensus 43 aLvLavy~LyQ~Y 55 (117)
T PF07226_consen 43 ALVLAVYCLYQRY 55 (117)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 126
>PRK10263 DNA translocase FtsK; Provisional
Probab=50.29 E-value=4.9e+02 Score=30.65 Aligned_cols=6 Identities=33% Similarity=0.457 Sum_probs=2.2
Q ss_pred hcchHH
Q 010647 277 IGGFWL 282 (505)
Q Consensus 277 ~~~~~~ 282 (505)
..|..+
T Consensus 63 l~GiVG 68 (1355)
T PRK10263 63 LGGMPG 68 (1355)
T ss_pred ccchHH
Confidence 333333
No 127
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=48.01 E-value=41 Score=31.53 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=18.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 010647 410 MCLASLRTFIVSGGVIIVGFLLYPVLVHAKDRKW 443 (505)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 443 (505)
.+.|-..+.++.+++.++.+++|.|.+|||++.|
T Consensus 257 aF~Pcgiaalvllil~vvliiLYiWlyrrRK~sw 290 (295)
T TIGR01478 257 TFLPYGIAALVLIILTVVLIILYIWLYRRRKKSW 290 (295)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3444444555555555566666766666555544
No 128
>PTZ00370 STEVOR; Provisional
Probab=46.28 E-value=43 Score=31.45 Aligned_cols=35 Identities=17% Similarity=0.162 Sum_probs=19.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 010647 409 VMCLASLRTFIVSGGVIIVGFLLYPVLVHAKDRKW 443 (505)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 443 (505)
..+.|-..+.++.+++.++.+++|.|.+|||++.|
T Consensus 252 aaF~Pygiaalvllil~vvliilYiwlyrrRK~sw 286 (296)
T PTZ00370 252 SAFYPYGIAALVLLILAVVLIILYIWLYRRRKNSW 286 (296)
T ss_pred HhhcccHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 33445445555555555566666766666555544
No 129
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=42.68 E-value=3.9e+02 Score=27.31 Aligned_cols=72 Identities=11% Similarity=0.134 Sum_probs=54.9
Q ss_pred HhHHhhhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 010647 88 IWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSA 164 (505)
Q Consensus 88 ~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 164 (505)
..+.+.+|+...++.+...++++..+......+++++++..++ .++ ..+..++.++...+...|.+..-++.
T Consensus 269 ~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~---isY--~~~v~i~~l~S~~lSn~G~~~II~~s 340 (439)
T PRK15433 269 AYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP---LSY--RTLVFILGGFSMVVSNLGLSQLIQIS 340 (439)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CcH--HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4677889999999999999999999999999999999998876 122 23334555666777777766544443
No 130
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=41.70 E-value=3.8e+02 Score=26.92 Aligned_cols=39 Identities=3% Similarity=-0.222 Sum_probs=26.6
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 010647 270 FAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQ 308 (505)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 308 (505)
..+..+...|+....++.+..+.+.+++..+..++..=+
T Consensus 282 ~~~~L~p~~G~~a~~lF~igLlaAG~sS~it~~~ag~~v 320 (390)
T TIGR01197 282 IGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFV 320 (390)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344455677777778888877777777777776655433
No 131
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=40.78 E-value=34 Score=27.81 Aligned_cols=15 Identities=20% Similarity=0.228 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHhhc
Q 010647 426 IVGFLLYPVLVHAKD 440 (505)
Q Consensus 426 ~~g~~~~~~~~~~~~ 440 (505)
++.++.|+++|++||
T Consensus 80 ~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 80 IILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHhcc
Confidence 334455555444433
No 132
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=38.34 E-value=4.1e+02 Score=26.32 Aligned_cols=9 Identities=22% Similarity=0.490 Sum_probs=5.3
Q ss_pred HHHhcCCCh
Q 010647 311 GMSEMGMLP 319 (505)
Q Consensus 311 a~a~dg~lP 319 (505)
-.+|.|.++
T Consensus 18 ~~~~~~~l~ 26 (385)
T PF03547_consen 18 LLGRFGILD 26 (385)
T ss_pred HHHHhCCCC
Confidence 345557776
No 133
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=37.70 E-value=4e+02 Score=26.01 Aligned_cols=80 Identities=11% Similarity=-0.003 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcC
Q 010647 237 LGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMG 316 (505)
Q Consensus 237 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg 316 (505)
+.++++.++++.+........-...+ .....+..++..++.++.+..+...+.+++.....+.+++-.+.++ =
T Consensus 39 ~~gIivs~vlf~~~g~vim~ig~~f~----a~~y~~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~---~ 111 (349)
T COG3949 39 ILGIILSTVLFTLSGAVIMTIGKKFN----ATSYREILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEM---F 111 (349)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc----ccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH---h
Confidence 35556666666666555544222211 1125677888889999999999999999988888877777555433 2
Q ss_pred CChhhhh
Q 010647 317 MLPAIFA 323 (505)
Q Consensus 317 ~lP~~~~ 323 (505)
.+|.|++
T Consensus 112 ~lP~wiG 118 (349)
T COG3949 112 GLPYWIG 118 (349)
T ss_pred CccHHHH
Confidence 3566554
No 134
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=37.26 E-value=4.5e+02 Score=26.88 Aligned_cols=17 Identities=12% Similarity=0.063 Sum_probs=9.5
Q ss_pred CCChHHHHHHHHHHHHH
Q 010647 329 GTPTLSILCSATGVIFL 345 (505)
Q Consensus 329 ~~P~~ai~~~~~~~~~~ 345 (505)
+.|.+..++...++.++
T Consensus 83 k~pk~i~llap~vt~l~ 99 (443)
T PRK12489 83 RNPKYITILAPFVTYTL 99 (443)
T ss_pred cChhHHHHHHHHHHHHH
Confidence 35777776554444443
No 135
>PF14256 YwiC: YwiC-like protein
Probab=37.20 E-value=2.4e+02 Score=23.26 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC
Q 010647 358 NFLYAIGMLLEFAAFIKLRIKK 379 (505)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~r~~~ 379 (505)
..+.+..|+...-....+|.|+
T Consensus 31 ~~aw~~~yl~~~p~~~~~k~r~ 52 (129)
T PF14256_consen 31 LLAWLFGYLAFYPFLLWLKQRR 52 (129)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 4455556655554444444443
No 136
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=36.96 E-value=4.7e+02 Score=27.16 Aligned_cols=94 Identities=11% Similarity=0.070 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhhccCCCCCchhHhHHhhhCChhHHHHHHH------HHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHH
Q 010647 66 SIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFW------KWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARI 139 (505)
Q Consensus 66 ~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (505)
....+.+|...+..+.+..-......+.+....++++-.. .++.|.-.....+...++.+++.- .+..
T Consensus 307 F~i~GivYG~~sG~iks~~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA~~L~~~~------~~~~ 380 (502)
T PF03806_consen 307 FLIPGIVYGIASGTIKSDKDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGAEFLKSLG------LPGI 380 (502)
T ss_pred HHHHHHHHhhhhceecCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhcC------CCcH
Confidence 4557999999999999988888888888777666655432 233333344455555666665431 2233
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH
Q 010647 140 PALLGITGALTYLNYRGLHIVGFSAV 165 (505)
Q Consensus 140 ~~~~~~~~~~~~i~~~g~~~~~~~~~ 165 (505)
...+.++++..++|++=..-++|...
T Consensus 381 ~l~i~fill~a~iNLfi~S~SaKWai 406 (502)
T PF03806_consen 381 PLIIGFILLTAFINLFIGSASAKWAI 406 (502)
T ss_pred HHHHHHHHHHHHHHHhhhcchhhHHH
Confidence 44556777888899886666666443
No 137
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=36.43 E-value=40 Score=32.28 Aligned_cols=21 Identities=14% Similarity=0.355 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHhhccC
Q 010647 422 GGVIIVGFLLYPVLVHAKDRK 442 (505)
Q Consensus 422 ~~~~~~g~~~~~~~~~~~~~~ 442 (505)
++++++.+++|+++|+||+++
T Consensus 266 liIVLIMvIIYLILRYRRKKK 286 (299)
T PF02009_consen 266 LIIVLIMVIIYLILRYRRKKK 286 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 334455566777777666543
No 138
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=35.51 E-value=55 Score=29.16 Aligned_cols=33 Identities=18% Similarity=0.422 Sum_probs=25.4
Q ss_pred hhccccCcC-cchhHHHHHHHHHHHHHHHHHHHH
Q 010647 221 LAGEVENPS-KTFPKALLGAVVLVVSSYLIPLLA 253 (505)
Q Consensus 221 ~~~E~k~p~-~~ip~ai~~~~~~~~~~y~~~~~~ 253 (505)
.-|-..||| |+.||+++.+.+.+.++-++....
T Consensus 203 TIEGfHDPKFKr~p~~vias~vaS~~~gii~v~~ 236 (240)
T PRK00968 203 TIEGFHDPKFKRWPRAVIASFVASLVCGIVAVLM 236 (240)
T ss_pred eeecCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 345667898 999999999998887776655543
No 139
>PHA03049 IMV membrane protein; Provisional
Probab=32.19 E-value=1.1e+02 Score=21.68 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 010647 421 SGGVIIVGFLLYPVLVHAK 439 (505)
Q Consensus 421 ~~~~~~~g~~~~~~~~~~~ 439 (505)
..-+.++|+++|..+.|.+
T Consensus 9 iICVaIi~lIvYgiYnkk~ 27 (68)
T PHA03049 9 IICVVIIGLIVYGIYNKKT 27 (68)
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 3444567888888776543
No 140
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=28.73 E-value=7.4e+02 Score=26.38 Aligned_cols=117 Identities=8% Similarity=0.056 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccCCcccccc------cCCcChhHHHHH
Q 010647 136 IARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIP--RIKPRRWLVVD------FKKVDWRGYFNS 207 (505)
Q Consensus 136 ~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~--~~~~~~~~~~~------~~~~~~~~~~~~ 207 (505)
|...+..+++.+++.+..+.|+|.+||+.-+....-.+.+.++.+-++. ..+.+...... .++..|......
T Consensus 252 ~~~~lc~~lv~~liyf~~~kG~kssGKvv~vtallPy~Il~illirgl~l~ga~~g~~y~~~~~~~kl~~~~vW~dAAtq 331 (629)
T KOG3659|consen 252 WTLALCLVLVWLLIYFSLWKGVKSSGKVVWVTALLPYIILLILLVRGLTLPGAKNGIQYYLTPDIEKLKEPSVWIDAATQ 331 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhccccccceEEeeehhhHHHHHHHHHHhcccccccccchhheecccHHHHhhHHHHHHHHHH
Confidence 4555666666777788899999999997433333322222223233331 11111111111 112345555555
Q ss_pred HHHHhc-chHhhhhhhccccCcCcchhHHHHHHHHHHHHHHHHHHHH
Q 010647 208 MFWNLN-YWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLA 253 (505)
Q Consensus 208 ~~~a~~-G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~~~~y~~~~~~ 253 (505)
++++.. |+.....++.-.|-- .|.-|=.+...++..+.+++..+.
T Consensus 332 iffslg~GfG~L~AfaSyn~F~-NNc~rDAll~S~in~~ts~~sgfv 377 (629)
T KOG3659|consen 332 IFFSLGPGFGVLIAFASYNKFH-NNCYRDALLTSIINCLTSFLSGFV 377 (629)
T ss_pred HHhhcCccchhhhhhhhhcccc-cchhhhhHHHHHHHHHHHHHHHHH
Confidence 666543 888887777766553 333333333334444444444443
No 141
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=28.64 E-value=15 Score=34.14 Aligned_cols=7 Identities=14% Similarity=-0.107 Sum_probs=0.0
Q ss_pred CCChHHH
Q 010647 329 GTPTLSI 335 (505)
Q Consensus 329 ~~P~~ai 335 (505)
-.|..++
T Consensus 77 LCPLGlL 83 (381)
T PF05297_consen 77 LCPLGLL 83 (381)
T ss_dssp -------
T ss_pred cCcchHH
Confidence 3555544
No 142
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=27.91 E-value=7.3e+02 Score=26.07 Aligned_cols=73 Identities=12% Similarity=-0.065 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HhhccCCCCCch--hHhHHhhhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 010647 55 LLGFLIFPLIWSIPEALITA-ELATSFPENGGY--VIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHS 128 (505)
Q Consensus 55 i~~~ii~~~~~~~~~a~~~~-el~s~~P~~Gg~--y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (505)
.++++.+.. +.++.++++. .+.+.+-+..|+ -.+-.+.+|++.+....-...+.......+.....+..+.++
T Consensus 294 ~i~~i~gw~-~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~af 369 (550)
T KOG1289|consen 294 AIGFILGWI-IIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAF 369 (550)
T ss_pred HHHHHHHHH-HHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 344444444 4777788888 777777666443 356678899998855555555554444444444455554443
No 143
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=27.60 E-value=1.9e+02 Score=19.92 Aligned_cols=24 Identities=8% Similarity=0.207 Sum_probs=18.6
Q ss_pred HHHHHHHHhcchHhhhhhhccccC
Q 010647 204 YFNSMFWNLNYWDKASTLAGEVEN 227 (505)
Q Consensus 204 ~~~~~~~a~~G~e~~~~~~~E~k~ 227 (505)
.+.+..|+|.|..+-.+.-++.++
T Consensus 4 ~~~sVl~af~GVqs~~~~e~Df~~ 27 (56)
T PF11174_consen 4 VVKSVLWAFFGVQSSKNRERDFAQ 27 (56)
T ss_pred HHHHHHHHHhCcCcchhHHHHHHc
Confidence 345668999999988888877764
No 144
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=24.93 E-value=7.3e+02 Score=25.05 Aligned_cols=46 Identities=15% Similarity=0.070 Sum_probs=38.6
Q ss_pred cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 010647 268 GYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMS 313 (505)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a 313 (505)
.-+..++++..|+...++..+...+.......++..+.+.++...-
T Consensus 65 ~~~~~~a~~~LG~~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l 110 (403)
T PRK15132 65 TGLGTLAKRYLGRYGQWLTGFSMMFLMYALTAAYISGAGELLASSI 110 (403)
T ss_pred CCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 3488999999999999998888888888888899988777775544
No 145
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=24.92 E-value=7.3e+02 Score=25.10 Aligned_cols=71 Identities=13% Similarity=0.120 Sum_probs=53.2
Q ss_pred HhHHhhhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHH
Q 010647 88 IWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGF 162 (505)
Q Consensus 88 ~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 162 (505)
.++++.+|+.-.++.|-+..+++..+.......++||.+...|.. ++. -+..++.+....+...|....-+
T Consensus 267 ~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~~--SY~--~~v~if~i~sflvan~GL~~Ii~ 337 (431)
T COG1114 267 AYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPKL--SYK--TWVIIFTLISFLVANLGLEQIIK 337 (431)
T ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cHH--HHHHHHHHHHHHHHHhhHHHHHH
Confidence 577788999999999999999999999999999999999999832 222 23335555566666666544333
No 146
>PF15050 SCIMP: SCIMP protein
Probab=24.87 E-value=1.4e+02 Score=23.98 Aligned_cols=15 Identities=27% Similarity=0.578 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHh
Q 010647 424 VIIVGFLLYPVLVHA 438 (505)
Q Consensus 424 ~~~~g~~~~~~~~~~ 438 (505)
-+.+|+++|...|+.
T Consensus 20 S~~lglIlyCvcR~~ 34 (133)
T PF15050_consen 20 SVVLGLILYCVCRWQ 34 (133)
T ss_pred HHHHHHHHHHHHHHH
Confidence 356777788666553
No 147
>PF14007 YtpI: YtpI-like protein
Probab=23.72 E-value=3.4e+02 Score=20.75 Aligned_cols=20 Identities=20% Similarity=0.374 Sum_probs=12.9
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q 010647 412 LASLRTFIVSGGVIIVGFLL 431 (505)
Q Consensus 412 ~~~~~~~~~~~~~~~~g~~~ 431 (505)
.++....+++.+.+++|+.-
T Consensus 54 ~~st~~~iV~~ifl~lG~~n 73 (89)
T PF14007_consen 54 FGSTVRLIVGAIFLVLGLFN 73 (89)
T ss_pred cccHHHHHHHHHHHHHhHHH
Confidence 44566667777777777653
No 148
>PTZ00046 rifin; Provisional
Probab=23.62 E-value=91 Score=30.54 Aligned_cols=20 Identities=15% Similarity=0.466 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhhccC
Q 010647 423 GVIIVGFLLYPVLVHAKDRK 442 (505)
Q Consensus 423 ~~~~~g~~~~~~~~~~~~~~ 442 (505)
++.++-+++|+..|+||+++
T Consensus 326 VIVLIMvIIYLILRYRRKKK 345 (358)
T PTZ00046 326 VIVLIMVIIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHHHHHHHhhhcch
Confidence 34456677888888877665
No 149
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=23.36 E-value=93 Score=30.37 Aligned_cols=20 Identities=15% Similarity=0.446 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhhccC
Q 010647 423 GVIIVGFLLYPVLVHAKDRK 442 (505)
Q Consensus 423 ~~~~~g~~~~~~~~~~~~~~ 442 (505)
++.++-+++|+..|+||+++
T Consensus 321 vIVLIMvIIYLILRYRRKKK 340 (353)
T TIGR01477 321 IIVLIMVIIYLILRYRRKKK 340 (353)
T ss_pred HHHHHHHHHHHHHHhhhcch
Confidence 34455677888888877664
No 150
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=22.45 E-value=4.5e+02 Score=21.71 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 010647 414 SLRTFIVSGGVIIVGFLLYPVL 435 (505)
Q Consensus 414 ~~~~~~~~~~~~~~g~~~~~~~ 435 (505)
+....+.+...+..|++.....
T Consensus 85 ~~~~~i~g~~~~~~G~~~i~l~ 106 (136)
T PF08507_consen 85 SILSIIIGLLLFLVGVIYIILG 106 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666667776544433
No 151
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=22.37 E-value=1.2e+02 Score=26.05 Aligned_cols=31 Identities=26% Similarity=0.503 Sum_probs=23.1
Q ss_pred hccccCcC-cchhHHHHHHHHHHHHHHHHHHH
Q 010647 222 AGEVENPS-KTFPKALLGAVVLVVSSYLIPLL 252 (505)
Q Consensus 222 ~~E~k~p~-~~ip~ai~~~~~~~~~~y~~~~~ 252 (505)
-|-..||| |..||+++.+.+...+.-++..+
T Consensus 194 IEGfHDPKfkk~pk~vias~vasil~~iia~l 225 (230)
T COG4060 194 IEGFHDPKFKKLPKAVIASLVASILAGIIAVL 225 (230)
T ss_pred eecccChhhhccchHHHHHHHHHHHHHHHHHH
Confidence 45568898 89999999988877666554443
No 152
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=22.18 E-value=4.3e+02 Score=21.47 Aligned_cols=21 Identities=29% Similarity=0.199 Sum_probs=13.3
Q ss_pred CCCCCChHHHHHHHHHHHHHH
Q 010647 326 SKYGTPTLSILCSATGVIFLS 346 (505)
Q Consensus 326 ~k~~~P~~ai~~~~~~~~~~~ 346 (505)
+|.+.+.+......++.++..
T Consensus 26 ~k~~~~~~~~~~~~~v~i~~~ 46 (146)
T PF14667_consen 26 GKTKWPFIITLIGAIVNIILN 46 (146)
T ss_pred CCchHHHHHHHHHHHHHHHHH
Confidence 455666666666666666554
No 153
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=21.91 E-value=1e+03 Score=25.62 Aligned_cols=49 Identities=14% Similarity=0.037 Sum_probs=29.6
Q ss_pred HHhcchHhhhhhhccccCcC--cchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010647 210 WNLNYWDKASTLAGEVENPS--KTFPKALLGAVVLVVSSYLIPLLAGTGGL 258 (505)
Q Consensus 210 ~a~~G~e~~~~~~~E~k~p~--~~ip~ai~~~~~~~~~~y~~~~~~~~~~~ 258 (505)
+.+...+.+..+..|.|--. |.-||.+..+-++..++..++........
T Consensus 442 ~~~~~~~qa~~~~~DlK~G~~l~~~Pr~~f~~Q~iG~~ig~~v~~~v~~l~ 492 (624)
T PF03169_consen 442 YGYAAASQAGDLMQDLKTGHYLGIPPRAQFYAQIIGTIIGAFVAVAVMRLL 492 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777776432 55666666666666666555555544433
No 154
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=21.41 E-value=31 Score=32.13 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=0.0
Q ss_pred CCCCChHHHHHHHH
Q 010647 327 KYGTPTLSILCSAT 340 (505)
Q Consensus 327 k~~~P~~ai~~~~~ 340 (505)
|.-.|...+.+...
T Consensus 17 r~p~~~a~l~~~~l 30 (381)
T PF05297_consen 17 RCPQPHASLLFGLL 30 (381)
T ss_dssp --------------
T ss_pred CCCCcchhHHHHHH
Confidence 34445554444433
No 155
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=21.37 E-value=1.8e+02 Score=20.71 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 010647 421 SGGVIIVGFLLYPVLVHAKD 440 (505)
Q Consensus 421 ~~~~~~~g~~~~~~~~~~~~ 440 (505)
+.-+.++|+++|..+.+.+.
T Consensus 9 ~ICVaii~lIlY~iYnr~~~ 28 (68)
T PF05961_consen 9 IICVAIIGLILYGIYNRKKT 28 (68)
T ss_pred HHHHHHHHHHHHHHHhcccc
Confidence 34455677888887765433
No 156
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=20.47 E-value=1e+03 Score=25.02 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010647 350 FQEILEFLNFLYAIGMLLEFAAFIKLRI 377 (505)
Q Consensus 350 ~~~l~~~~~~~~~~~~~~~~~~~~~~r~ 377 (505)
+..+..+..+-.+++.-+..++.+.-+|
T Consensus 366 f~t~~~l~~lw~~v~~PL~~lG~~~g~k 393 (521)
T PF02990_consen 366 FGTILFLIALWFFVSIPLTFLGGYFGFK 393 (521)
T ss_pred hHHHHHHHHHHHHHhhhhhhcchhhhcC
Confidence 5555555555555555555555555443
No 157
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=20.30 E-value=9.3e+02 Score=24.61 Aligned_cols=94 Identities=7% Similarity=-0.020 Sum_probs=57.1
Q ss_pred cccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhccCCCCCChHHHHHHHHHHHHH
Q 010647 266 SDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFL 345 (505)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~k~~~P~~ai~~~~~~~~~~ 345 (505)
...+..++.++..|+...++......+..+++...++..++..+-++-+--..... +.+.....+++..+.....
T Consensus 103 r~~~Y~dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~-----~l~~~~f~iif~~i~~~~s 177 (437)
T KOG1303|consen 103 RRYRYPDLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN-----SLDKQYFIIIFGLIVLPLS 177 (437)
T ss_pred cCCChHHHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-----cccceehhhhHHHHHHHHH
Confidence 34689999999999777777778888888999988998888888776553322211 1112333333333332222
Q ss_pred HhhhHHHHHHHHHHHHHHH
Q 010647 346 SWMSFQEILEFLNFLYAIG 364 (505)
Q Consensus 346 ~~~~~~~l~~~~~~~~~~~ 364 (505)
-+.++..+.-.+..+..++
T Consensus 178 ~lp~~~~l~~~S~~~avmS 196 (437)
T KOG1303|consen 178 QLPNFHSLSYLSLVGAVMS 196 (437)
T ss_pred HCCCcchhHHHHHHHHHHH
Confidence 2445555555554444444
No 158
>PRK03557 zinc transporter ZitB; Provisional
Probab=20.08 E-value=7.9e+02 Score=23.66 Aligned_cols=16 Identities=6% Similarity=-0.151 Sum_probs=7.8
Q ss_pred ChHHHHHHHHHHHHHH
Q 010647 331 PTLSILCSATGVIFLS 346 (505)
Q Consensus 331 P~~ai~~~~~~~~~~~ 346 (505)
..+.++......+++.
T Consensus 17 ~~r~~~~~~~~n~~l~ 32 (312)
T PRK03557 17 NARRLLYAFGVTAGFM 32 (312)
T ss_pred cchHHHHHHHHHHHHH
Confidence 3445555555544443
Done!