Query 010649
Match_columns 505
No_of_seqs 394 out of 3300
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 02:59:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010649.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010649hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 3.9E-87 8.4E-92 657.8 39.4 433 54-486 16-483 (519)
2 PTZ00110 helicase; Provisional 100.0 1.2E-82 2.6E-87 660.0 55.5 438 46-483 75-516 (545)
3 KOG0336 ATP-dependent RNA heli 100.0 5E-81 1.1E-85 578.8 32.2 435 53-488 166-609 (629)
4 KOG0339 ATP-dependent RNA heli 100.0 4.8E-78 1E-82 572.4 37.2 427 52-479 176-603 (731)
5 KOG0333 U5 snRNP-like RNA heli 100.0 4.3E-74 9.3E-79 548.2 33.1 410 68-479 214-653 (673)
6 PLN00206 DEAD-box ATP-dependen 100.0 3E-71 6.5E-76 573.5 48.1 426 52-479 73-503 (518)
7 KOG0341 DEAD-box protein abstr 100.0 7.4E-74 1.6E-78 527.7 25.1 416 63-481 134-559 (610)
8 KOG0335 ATP-dependent RNA heli 100.0 4.7E-72 1E-76 541.5 34.9 408 77-485 50-478 (482)
9 KOG0330 ATP-dependent RNA heli 100.0 1.9E-71 4.1E-76 513.0 31.2 367 96-469 58-425 (476)
10 KOG0334 RNA helicase [RNA proc 100.0 1.9E-71 4.2E-76 572.6 32.6 430 51-481 316-750 (997)
11 COG0513 SrmB Superfamily II DN 100.0 2.3E-67 4.9E-72 540.7 41.7 373 99-475 29-408 (513)
12 KOG0328 Predicted ATP-dependen 100.0 3.7E-67 8E-72 464.8 29.9 378 93-477 21-399 (400)
13 PRK10590 ATP-dependent RNA hel 100.0 2E-65 4.2E-70 524.1 44.8 365 100-466 2-367 (456)
14 KOG0338 ATP-dependent RNA heli 100.0 1.2E-65 2.7E-70 488.5 27.7 362 98-463 180-545 (691)
15 PRK04537 ATP-dependent RNA hel 100.0 2.1E-63 4.5E-68 517.8 45.4 365 99-465 9-378 (572)
16 PRK04837 ATP-dependent RNA hel 100.0 2.4E-63 5.2E-68 505.5 43.6 367 98-466 7-377 (423)
17 KOG0342 ATP-dependent RNA heli 100.0 6.6E-64 1.4E-68 476.5 30.8 364 97-461 80-447 (543)
18 PRK11776 ATP-dependent RNA hel 100.0 5.6E-62 1.2E-66 500.8 42.0 359 99-465 4-363 (460)
19 KOG0340 ATP-dependent RNA heli 100.0 3.3E-63 7.2E-68 453.1 28.7 364 98-466 6-376 (442)
20 PRK11634 ATP-dependent RNA hel 100.0 1.1E-61 2.4E-66 507.3 42.2 357 98-461 5-362 (629)
21 KOG0343 RNA Helicase [RNA proc 100.0 2.9E-62 6.2E-67 469.5 32.5 356 96-454 66-425 (758)
22 KOG0345 ATP-dependent RNA heli 100.0 1.8E-61 3.8E-66 456.8 34.6 356 99-455 4-368 (567)
23 PRK11192 ATP-dependent RNA hel 100.0 2.7E-60 5.8E-65 485.4 43.4 363 100-465 2-366 (434)
24 KOG0326 ATP-dependent RNA heli 100.0 3.4E-63 7.4E-68 446.6 18.5 368 99-474 85-452 (459)
25 PRK01297 ATP-dependent RNA hel 100.0 5E-59 1.1E-63 480.1 44.1 379 96-476 84-469 (475)
26 KOG0348 ATP-dependent RNA heli 100.0 9.1E-60 2E-64 450.9 30.3 364 98-461 135-564 (708)
27 KOG0346 RNA helicase [RNA proc 100.0 3.9E-59 8.5E-64 437.0 28.1 368 99-466 19-425 (569)
28 PTZ00424 helicase 45; Provisio 100.0 1.2E-57 2.6E-62 462.7 40.9 368 97-471 26-394 (401)
29 KOG0332 ATP-dependent RNA heli 100.0 3.9E-56 8.4E-61 409.1 30.2 373 96-477 87-471 (477)
30 KOG0344 ATP-dependent RNA heli 100.0 1.5E-56 3.3E-61 436.1 27.9 397 82-479 115-523 (593)
31 KOG0347 RNA helicase [RNA proc 100.0 1.2E-56 2.5E-61 430.8 19.1 370 94-466 176-585 (731)
32 KOG0327 Translation initiation 100.0 7.5E-55 1.6E-59 404.3 24.6 370 98-476 25-395 (397)
33 KOG0337 ATP-dependent RNA heli 100.0 5.2E-55 1.1E-59 407.4 20.7 362 98-464 20-381 (529)
34 TIGR03817 DECH_helic helicase/ 100.0 4.9E-52 1.1E-56 443.0 38.7 330 106-450 21-385 (742)
35 KOG4284 DEAD box protein [Tran 100.0 4.4E-52 9.5E-57 405.4 23.0 355 91-453 17-381 (980)
36 PLN03137 ATP-dependent DNA hel 100.0 5.1E-50 1.1E-54 424.4 38.0 344 100-461 436-797 (1195)
37 TIGR00614 recQ_fam ATP-depende 100.0 6.4E-50 1.4E-54 410.8 35.6 325 116-461 6-343 (470)
38 KOG0350 DEAD-box ATP-dependent 100.0 7.6E-51 1.6E-55 387.1 25.8 350 110-464 148-553 (620)
39 PRK11057 ATP-dependent DNA hel 100.0 1.1E-47 2.3E-52 404.3 37.8 332 107-460 10-352 (607)
40 PRK02362 ski2-like helicase; P 100.0 9.5E-48 2.1E-52 414.6 35.9 336 100-451 2-397 (737)
41 PRK13767 ATP-dependent helicas 100.0 2.1E-46 4.7E-51 407.5 39.1 343 106-450 18-397 (876)
42 TIGR01389 recQ ATP-dependent D 100.0 1.1E-46 2.4E-51 398.0 35.4 322 117-460 9-340 (591)
43 PRK00254 ski2-like helicase; P 100.0 4.7E-46 1E-50 400.5 35.5 337 100-452 2-389 (720)
44 TIGR00580 mfd transcription-re 100.0 4.4E-44 9.6E-49 385.2 41.9 336 106-466 436-787 (926)
45 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.2E-44 2.5E-49 378.8 34.7 314 117-450 12-390 (844)
46 PRK01172 ski2-like helicase; P 100.0 6.4E-45 1.4E-49 390.2 31.4 337 100-451 2-378 (674)
47 COG1201 Lhr Lhr-like helicases 100.0 5.3E-44 1.2E-48 371.8 32.6 338 106-450 8-361 (814)
48 PRK10917 ATP-dependent DNA hel 100.0 5E-43 1.1E-47 372.6 40.5 360 108-493 248-629 (681)
49 KOG0329 ATP-dependent RNA heli 100.0 7.8E-46 1.7E-50 324.5 15.3 334 99-473 42-378 (387)
50 PRK10689 transcription-repair 100.0 5.7E-43 1.2E-47 384.4 40.9 320 107-451 586-919 (1147)
51 TIGR00643 recG ATP-dependent D 100.0 2.5E-42 5.5E-47 365.0 39.4 358 110-493 225-606 (630)
52 COG1111 MPH1 ERCC4-like helica 100.0 3.5E-41 7.6E-46 323.9 33.9 324 119-452 13-482 (542)
53 PRK09751 putative ATP-dependen 100.0 2E-41 4.4E-46 373.7 34.1 295 141-438 1-371 (1490)
54 COG0514 RecQ Superfamily II DN 100.0 1.4E-41 3E-46 341.8 28.9 326 117-462 13-348 (590)
55 PHA02653 RNA helicase NPH-II; 100.0 4.6E-41 1E-45 350.2 33.6 310 124-453 167-516 (675)
56 PHA02558 uvsW UvsW helicase; P 100.0 8.9E-41 1.9E-45 344.8 31.9 345 75-443 66-444 (501)
57 PRK09401 reverse gyrase; Revie 100.0 6.7E-40 1.5E-44 360.9 36.0 303 112-438 71-431 (1176)
58 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.2E-39 2.6E-44 347.6 33.8 305 125-454 6-339 (819)
59 PRK12898 secA preprotein trans 100.0 1.5E-39 3.1E-44 333.6 31.7 317 120-453 102-588 (656)
60 COG1202 Superfamily II helicas 100.0 7E-41 1.5E-45 323.9 20.2 372 60-451 160-553 (830)
61 COG1204 Superfamily II helicas 100.0 4.8E-40 1E-44 347.1 28.1 336 104-451 14-408 (766)
62 TIGR01587 cas3_core CRISPR-ass 100.0 1.3E-39 2.8E-44 325.2 28.1 300 138-452 1-337 (358)
63 PRK14701 reverse gyrase; Provi 100.0 2.2E-39 4.7E-44 363.9 32.8 325 109-455 67-460 (1638)
64 PRK11664 ATP-dependent RNA hel 100.0 7.1E-39 1.5E-43 342.5 32.1 304 125-453 9-341 (812)
65 TIGR01054 rgy reverse gyrase. 100.0 4.7E-38 1E-42 346.9 34.7 292 109-423 66-409 (1171)
66 PRK13766 Hef nuclease; Provisi 100.0 4.4E-37 9.6E-42 335.8 39.0 324 119-452 13-480 (773)
67 PRK09200 preprotein translocas 100.0 7E-38 1.5E-42 327.9 30.6 319 118-453 76-543 (790)
68 KOG0354 DEAD-box like helicase 100.0 9.3E-38 2E-42 317.5 30.0 334 106-450 47-528 (746)
69 TIGR03714 secA2 accessory Sec 100.0 2E-37 4.2E-42 321.5 31.1 320 120-453 67-539 (762)
70 KOG0349 Putative DEAD-box RNA 100.0 2.1E-38 4.6E-43 296.9 18.7 310 172-483 286-679 (725)
71 TIGR00603 rad25 DNA repair hel 100.0 6.5E-37 1.4E-41 317.7 29.9 321 120-467 254-625 (732)
72 TIGR00963 secA preprotein tran 100.0 1.5E-36 3.2E-41 313.0 30.4 316 121-453 56-519 (745)
73 KOG0952 DNA/RNA helicase MER3/ 100.0 1.1E-36 2.4E-41 312.7 26.3 339 117-461 106-501 (1230)
74 TIGR03158 cas3_cyano CRISPR-as 100.0 1.1E-35 2.3E-40 293.9 30.6 291 125-436 1-357 (357)
75 COG1205 Distinct helicase fami 100.0 6.7E-35 1.5E-39 312.4 31.2 334 106-449 55-420 (851)
76 KOG0351 ATP-dependent DNA heli 100.0 4.9E-35 1.1E-39 311.0 28.6 330 115-461 258-602 (941)
77 PRK11131 ATP-dependent RNA hel 100.0 2.6E-34 5.7E-39 312.2 29.5 301 124-453 77-413 (1294)
78 PRK04914 ATP-dependent helicas 100.0 3.2E-33 6.9E-38 300.0 32.1 334 121-466 152-618 (956)
79 COG1061 SSL2 DNA or RNA helica 100.0 1.7E-33 3.6E-38 285.0 27.0 293 120-437 35-375 (442)
80 COG1200 RecG RecG-like helicas 100.0 2.4E-32 5.2E-37 274.2 34.9 364 106-494 247-632 (677)
81 KOG0352 ATP-dependent DNA heli 100.0 7.2E-34 1.6E-38 266.3 20.8 330 109-457 6-368 (641)
82 KOG0353 ATP-dependent DNA heli 100.0 2E-33 4.2E-38 259.7 23.0 334 103-453 75-469 (695)
83 KOG0951 RNA helicase BRR2, DEA 100.0 5.5E-33 1.2E-37 289.0 24.0 346 105-459 295-710 (1674)
84 PRK05580 primosome assembly pr 100.0 4.6E-31 9.9E-36 280.0 38.6 314 120-453 143-551 (679)
85 PRK09694 helicase Cas3; Provis 100.0 3.5E-31 7.6E-36 282.7 35.7 353 119-481 284-727 (878)
86 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.8E-31 3.9E-36 291.3 27.2 302 127-453 73-406 (1283)
87 cd00268 DEADc DEAD-box helicas 100.0 4.3E-31 9.4E-36 242.3 24.8 202 101-305 1-202 (203)
88 COG1197 Mfd Transcription-repa 100.0 1.4E-29 3.1E-34 267.8 35.8 323 105-451 578-913 (1139)
89 PRK13104 secA preprotein trans 100.0 4.2E-30 9.1E-35 268.8 30.9 317 122-453 81-589 (896)
90 PRK12904 preprotein translocas 100.0 1.2E-29 2.6E-34 265.3 29.1 316 121-453 81-575 (830)
91 TIGR00595 priA primosomal prot 100.0 2.8E-29 6E-34 257.2 31.2 290 140-450 1-380 (505)
92 PLN03142 Probable chromatin-re 100.0 1.7E-29 3.6E-34 272.3 30.7 316 121-449 169-595 (1033)
93 KOG0947 Cytoplasmic exosomal R 100.0 5.3E-30 1.1E-34 261.0 22.7 312 120-451 296-723 (1248)
94 PRK12899 secA preprotein trans 100.0 4.1E-29 8.9E-34 260.8 29.1 180 68-259 32-228 (970)
95 PRK12906 secA preprotein trans 100.0 4.8E-29 1E-33 259.8 26.9 316 121-453 80-555 (796)
96 PRK11448 hsdR type I restricti 100.0 9.7E-29 2.1E-33 271.4 29.0 308 120-439 412-801 (1123)
97 KOG0948 Nuclear exosomal RNA h 100.0 1E-29 2.2E-34 253.0 19.0 309 120-451 128-539 (1041)
98 KOG0950 DNA polymerase theta/e 100.0 7.6E-29 1.6E-33 254.4 25.2 343 106-461 208-621 (1008)
99 COG4098 comFA Superfamily II D 100.0 8.8E-27 1.9E-31 213.6 30.9 307 121-456 97-421 (441)
100 COG4581 Superfamily II RNA hel 100.0 7.1E-28 1.5E-32 254.9 27.1 312 120-451 118-537 (1041)
101 KOG0385 Chromatin remodeling c 100.0 7.7E-27 1.7E-31 233.5 25.9 328 121-461 167-607 (971)
102 PRK13107 preprotein translocas 100.0 1.1E-26 2.3E-31 242.6 26.9 316 121-453 82-593 (908)
103 PF00270 DEAD: DEAD/DEAH box h 99.9 1.5E-26 3.3E-31 205.7 19.3 165 123-293 1-168 (169)
104 COG1643 HrpA HrpA-like helicas 99.9 2E-25 4.4E-30 235.1 26.9 308 123-452 52-388 (845)
105 COG1203 CRISPR-associated heli 99.9 2E-25 4.4E-30 239.2 25.2 325 121-453 195-552 (733)
106 KOG0387 Transcription-coupled 99.9 3.3E-24 7.2E-29 215.8 27.4 318 121-451 205-658 (923)
107 KOG0922 DEAH-box RNA helicase 99.9 3.9E-24 8.5E-29 213.1 25.3 306 123-453 53-392 (674)
108 KOG0384 Chromodomain-helicase 99.9 4E-24 8.8E-29 223.9 18.1 328 120-463 369-821 (1373)
109 KOG0920 ATP-dependent RNA heli 99.9 4.9E-23 1.1E-27 216.2 26.1 317 121-452 173-545 (924)
110 KOG0390 DNA repair protein, SN 99.9 9.6E-23 2.1E-27 210.5 27.7 322 121-449 238-703 (776)
111 COG4096 HsdR Type I site-speci 99.9 3E-23 6.6E-28 211.5 22.6 296 120-438 164-525 (875)
112 KOG0923 mRNA splicing factor A 99.9 1.6E-23 3.5E-28 206.7 19.9 308 118-450 262-605 (902)
113 TIGR00348 hsdR type I site-spe 99.9 1.8E-22 3.9E-27 214.4 29.1 300 122-438 239-634 (667)
114 COG1110 Reverse gyrase [DNA re 99.9 4.5E-22 9.7E-27 205.9 30.6 290 109-423 70-417 (1187)
115 TIGR00631 uvrb excinuclease AB 99.9 7.1E-22 1.5E-26 207.4 32.4 135 327-462 424-564 (655)
116 PRK12900 secA preprotein trans 99.9 8.5E-23 1.9E-27 214.3 23.9 127 325-453 578-713 (1025)
117 COG0556 UvrB Helicase subunit 99.9 2.6E-22 5.6E-27 194.5 25.0 170 277-455 386-561 (663)
118 COG1198 PriA Primosomal protei 99.9 1.1E-21 2.3E-26 204.2 31.1 318 121-458 198-610 (730)
119 KOG0392 SNF2 family DNA-depend 99.9 1.4E-22 3E-27 211.7 22.5 323 121-451 975-1454(1549)
120 KOG0924 mRNA splicing factor A 99.9 1.6E-22 3.5E-27 200.1 20.1 305 123-451 358-697 (1042)
121 TIGR01407 dinG_rel DnaQ family 99.9 7E-21 1.5E-25 208.6 34.2 346 107-465 232-830 (850)
122 PRK05298 excinuclease ABC subu 99.9 2.7E-21 5.9E-26 204.6 29.9 146 328-474 429-589 (652)
123 KOG0389 SNF2 family DNA-depend 99.9 3.4E-22 7.5E-27 201.2 20.8 319 121-451 399-888 (941)
124 PRK12326 preprotein translocas 99.9 5.1E-21 1.1E-25 195.8 28.7 315 121-453 78-549 (764)
125 KOG1123 RNA polymerase II tran 99.9 1.9E-22 4.2E-27 193.3 16.7 310 120-455 301-657 (776)
126 KOG0949 Predicted helicase, DE 99.9 3.5E-22 7.6E-27 204.7 14.9 159 120-288 510-672 (1330)
127 KOG1000 Chromatin remodeling p 99.9 3.4E-21 7.3E-26 184.6 20.6 314 120-450 197-600 (689)
128 smart00487 DEXDc DEAD-like hel 99.9 1E-20 2.2E-25 172.4 21.6 186 117-308 4-191 (201)
129 PRK13103 secA preprotein trans 99.9 2.8E-20 6.1E-25 194.9 24.3 315 121-453 82-593 (913)
130 COG4889 Predicted helicase [Ge 99.9 4.2E-21 9.2E-26 194.5 14.5 358 99-468 140-618 (1518)
131 PRK12903 secA preprotein trans 99.8 8.9E-19 1.9E-23 181.8 27.3 315 121-453 78-541 (925)
132 KOG0925 mRNA splicing factor A 99.8 1.4E-19 3E-24 173.3 18.9 326 98-451 24-387 (699)
133 KOG0926 DEAH-box RNA helicase 99.8 1.5E-19 3.3E-24 182.0 19.0 299 132-451 267-704 (1172)
134 PRK07246 bifunctional ATP-depe 99.8 7.6E-18 1.6E-22 182.2 31.9 329 120-464 244-798 (820)
135 KOG0391 SNF2 family DNA-depend 99.8 2.3E-18 5E-23 178.9 22.4 133 327-459 1258-1393(1958)
136 CHL00122 secA preprotein trans 99.8 6.2E-18 1.3E-22 176.7 24.6 274 121-411 76-491 (870)
137 KOG0388 SNF2 family DNA-depend 99.8 2.3E-18 5E-23 171.4 19.7 149 326-479 1025-1175(1185)
138 cd00079 HELICc Helicase superf 99.8 1.2E-18 2.7E-23 147.6 14.3 119 329-447 12-131 (131)
139 KOG0386 Chromatin remodeling c 99.8 1.1E-18 2.3E-23 180.3 16.0 320 121-460 394-845 (1157)
140 KOG1002 Nucleotide excision re 99.8 1.2E-17 2.7E-22 160.2 21.5 137 328-466 619-762 (791)
141 TIGR03117 cas_csf4 CRISPR-asso 99.8 5.2E-16 1.1E-20 160.8 33.2 119 343-463 469-629 (636)
142 PRK08074 bifunctional ATP-depe 99.8 3.2E-16 6.8E-21 172.7 33.0 134 331-464 737-908 (928)
143 KOG4150 Predicted ATP-dependen 99.8 9.8E-18 2.1E-22 163.4 18.0 326 115-449 280-638 (1034)
144 KOG0953 Mitochondrial RNA heli 99.8 1.5E-17 3.3E-22 162.1 17.1 265 139-451 194-477 (700)
145 KOG4439 RNA polymerase II tran 99.8 2.8E-17 6E-22 164.0 19.4 120 327-446 727-851 (901)
146 PRK12902 secA preprotein trans 99.8 3.3E-16 7.1E-21 163.6 28.2 274 121-411 85-506 (939)
147 PF00271 Helicase_C: Helicase 99.8 3.1E-18 6.7E-23 131.0 9.0 78 362-439 1-78 (78)
148 cd00046 DEXDc DEAD-like helica 99.7 6E-17 1.3E-21 138.8 16.7 144 137-287 1-144 (144)
149 PF04851 ResIII: Type III rest 99.7 6.5E-17 1.4E-21 145.6 14.8 152 121-288 3-183 (184)
150 KOG0951 RNA helicase BRR2, DEA 99.7 1.6E-15 3.4E-20 160.0 21.1 314 121-459 1143-1502(1674)
151 TIGR02562 cas3_yersinia CRISPR 99.7 1.5E-14 3.3E-19 153.5 23.6 320 112-441 399-882 (1110)
152 COG0553 HepA Superfamily II DN 99.7 1E-14 2.2E-19 163.0 23.7 337 120-465 337-834 (866)
153 PRK11747 dinG ATP-dependent DN 99.6 1.5E-13 3.3E-18 147.0 30.4 130 331-463 520-688 (697)
154 PRK12901 secA preprotein trans 99.6 1.2E-14 2.7E-19 153.5 21.0 127 325-453 608-743 (1112)
155 KOG1015 Transcription regulato 99.6 6E-15 1.3E-19 151.3 17.3 124 328-451 1125-1275(1567)
156 COG1199 DinG Rad3-related DNA 99.6 1.8E-13 3.9E-18 147.5 29.3 103 345-450 480-616 (654)
157 smart00490 HELICc helicase sup 99.6 1.9E-15 4.1E-20 116.6 9.0 81 359-439 2-82 (82)
158 PRK14873 primosome assembly pr 99.6 1.5E-13 3.3E-18 144.5 26.1 279 142-452 166-540 (665)
159 TIGR00604 rad3 DNA repair heli 99.6 6E-13 1.3E-17 143.6 30.5 142 330-481 506-695 (705)
160 PF02399 Herpes_ori_bp: Origin 99.6 4.1E-13 8.9E-18 139.3 23.3 289 138-451 51-388 (824)
161 PF06862 DUF1253: Protein of u 99.6 3.3E-12 7.2E-17 126.3 28.1 289 172-461 37-425 (442)
162 PF00176 SNF2_N: SNF2 family N 99.4 1.2E-12 2.6E-17 127.5 14.0 156 125-287 1-172 (299)
163 COG0653 SecA Preprotein transl 99.4 2.4E-11 5.2E-16 127.2 20.0 317 121-452 78-546 (822)
164 COG0610 Type I site-specific r 99.4 7.4E-11 1.6E-15 129.8 23.8 297 137-449 274-651 (962)
165 PF07652 Flavi_DEAD: Flaviviru 99.4 2.3E-12 5E-17 106.5 8.5 135 136-291 4-140 (148)
166 KOG2340 Uncharacterized conser 99.3 3.7E-10 8.1E-15 110.4 20.8 343 118-461 213-678 (698)
167 KOG0921 Dosage compensation co 99.3 3.9E-11 8.4E-16 123.5 14.1 305 130-450 387-773 (1282)
168 smart00488 DEXDc2 DEAD-like he 99.2 1.5E-10 3.2E-15 111.1 14.3 73 121-195 8-84 (289)
169 smart00489 DEXDc3 DEAD-like he 99.2 1.5E-10 3.2E-15 111.1 14.3 73 121-195 8-84 (289)
170 KOG1016 Predicted DNA helicase 99.2 2.4E-10 5.2E-15 115.9 15.8 117 345-461 720-857 (1387)
171 PRK15483 type III restriction- 99.1 2.8E-08 6.1E-13 106.8 26.5 73 394-466 501-583 (986)
172 KOG1001 Helicase-like transcri 99.1 7.2E-10 1.6E-14 116.3 12.8 119 328-446 521-643 (674)
173 PF07517 SecA_DEAD: SecA DEAD- 99.0 8.9E-09 1.9E-13 96.2 14.9 129 119-259 75-210 (266)
174 KOG0952 DNA/RNA helicase MER3/ 98.8 9.9E-09 2.1E-13 108.2 8.4 259 122-396 928-1207(1230)
175 TIGR00596 rad1 DNA repair prot 98.8 1.3E-07 2.7E-12 101.8 16.8 66 222-287 7-72 (814)
176 PF13872 AAA_34: P-loop contai 98.7 3.7E-07 8E-12 85.6 12.7 173 102-293 24-226 (303)
177 PF13604 AAA_30: AAA domain; P 98.6 1.8E-07 3.9E-12 84.7 9.9 123 121-286 1-130 (196)
178 COG3587 Restriction endonuclea 98.6 5.7E-06 1.2E-10 86.3 21.7 72 393-464 482-566 (985)
179 PF13086 AAA_11: AAA domain; P 98.6 5.2E-07 1.1E-11 84.3 12.8 73 121-194 1-75 (236)
180 PF02562 PhoH: PhoH-like prote 98.5 6.3E-07 1.4E-11 80.5 10.8 146 120-286 3-155 (205)
181 PF13307 Helicase_C_2: Helicas 98.5 5.3E-07 1.1E-11 79.4 8.2 106 344-451 9-150 (167)
182 TIGR00376 DNA helicase, putati 98.4 4E-05 8.7E-10 81.6 23.0 68 120-195 156-224 (637)
183 KOG1802 RNA helicase nonsense 98.4 6.3E-06 1.4E-10 83.5 14.9 84 113-207 402-485 (935)
184 PF12340 DUF3638: Protein of u 98.4 8.2E-06 1.8E-10 73.9 13.1 152 99-260 3-186 (229)
185 PF09848 DUF2075: Uncharacteri 98.4 3.3E-05 7.1E-10 76.8 18.8 108 138-273 3-117 (352)
186 KOG1803 DNA helicase [Replicat 98.2 5.7E-06 1.2E-10 83.4 10.0 65 121-193 185-250 (649)
187 TIGR01447 recD exodeoxyribonuc 98.2 1.6E-05 3.5E-10 83.5 13.7 143 123-286 147-295 (586)
188 PRK10875 recD exonuclease V su 98.2 1.3E-05 2.7E-10 84.5 12.9 143 122-286 153-301 (615)
189 TIGR01448 recD_rel helicase, p 98.2 2.1E-05 4.5E-10 85.1 14.1 133 113-286 315-452 (720)
190 PRK10536 hypothetical protein; 98.2 4.5E-05 9.8E-10 70.5 14.2 143 117-284 55-210 (262)
191 KOG1132 Helicase of the DEAD s 98.0 3.8E-05 8.2E-10 80.7 11.5 80 120-199 20-137 (945)
192 TIGR02768 TraA_Ti Ti-type conj 97.9 0.00017 3.8E-09 78.3 14.8 122 120-284 351-474 (744)
193 PF13245 AAA_19: Part of AAA d 97.9 6E-05 1.3E-09 56.4 7.7 60 129-192 2-62 (76)
194 PRK13889 conjugal transfer rel 97.9 0.00012 2.7E-09 80.6 13.3 124 120-286 345-470 (988)
195 COG3421 Uncharacterized protei 97.8 0.00013 2.8E-09 73.5 10.9 137 141-289 2-167 (812)
196 KOG0383 Predicted helicase [Ge 97.8 2.8E-06 6.2E-11 88.6 -1.4 79 328-407 614-696 (696)
197 KOG1805 DNA replication helica 97.8 0.00016 3.4E-09 76.9 11.0 139 102-260 654-810 (1100)
198 PRK04296 thymidine kinase; Pro 97.8 6.5E-05 1.4E-09 67.6 7.2 108 138-286 4-114 (190)
199 PRK06526 transposase; Provisio 97.8 0.00013 2.8E-09 68.6 8.9 112 131-291 93-205 (254)
200 PRK13826 Dtr system oriT relax 97.7 0.00089 1.9E-08 74.5 15.4 124 120-286 380-505 (1102)
201 TIGR02760 TraI_TIGR conjugativ 97.7 0.0029 6.4E-08 75.6 20.3 236 121-393 429-685 (1960)
202 smart00492 HELICc3 helicase su 97.6 0.0005 1.1E-08 58.3 9.5 74 376-449 29-136 (141)
203 PRK08181 transposase; Validate 97.6 0.001 2.3E-08 62.9 12.5 120 123-291 89-213 (269)
204 COG1875 NYN ribonuclease and A 97.6 0.00074 1.6E-08 64.6 10.7 143 117-284 224-385 (436)
205 smart00491 HELICc2 helicase su 97.5 0.00044 9.6E-09 58.8 8.4 68 382-449 32-137 (142)
206 PF13871 Helicase_C_4: Helicas 97.5 0.00045 9.7E-09 64.9 8.7 83 385-467 52-146 (278)
207 PRK14974 cell division protein 97.5 0.0012 2.6E-08 64.4 11.9 130 138-299 142-276 (336)
208 PF13401 AAA_22: AAA domain; P 97.5 0.00044 9.5E-09 58.0 7.8 20 136-155 4-23 (131)
209 KOG0298 DEAD box-containing he 97.4 0.00047 1E-08 75.3 9.0 151 136-291 374-554 (1394)
210 PRK12723 flagellar biosynthesi 97.4 0.0038 8.3E-08 62.2 14.7 130 137-298 175-309 (388)
211 cd00009 AAA The AAA+ (ATPases 97.4 0.0023 5E-08 54.3 10.8 25 136-161 19-43 (151)
212 PF00580 UvrD-helicase: UvrD/R 97.3 0.00077 1.7E-08 65.9 8.0 123 122-256 1-125 (315)
213 PRK14722 flhF flagellar biosyn 97.2 0.0029 6.2E-08 62.5 11.2 179 136-353 137-317 (374)
214 PRK11889 flhF flagellar biosyn 97.2 0.01 2.2E-07 58.6 14.5 128 137-299 242-375 (436)
215 PRK07952 DNA replication prote 97.2 0.011 2.4E-07 55.1 14.1 109 137-292 100-210 (244)
216 KOG0989 Replication factor C, 97.2 0.0024 5.1E-08 59.9 8.9 46 241-287 124-169 (346)
217 PRK05707 DNA polymerase III su 97.1 0.0023 5E-08 62.6 9.3 42 121-163 3-48 (328)
218 COG2805 PilT Tfp pilus assembl 97.1 0.0014 3.1E-08 61.1 7.3 53 92-164 99-152 (353)
219 PF00448 SRP54: SRP54-type pro 97.1 0.00087 1.9E-08 60.4 5.7 54 245-298 82-136 (196)
220 PF05970 PIF1: PIF1-like helic 97.1 0.0021 4.5E-08 64.2 8.9 60 121-188 1-66 (364)
221 PRK08116 hypothetical protein; 97.1 0.023 5E-07 54.1 15.5 110 138-293 116-227 (268)
222 smart00382 AAA ATPases associa 97.1 0.0013 2.7E-08 55.5 6.0 41 136-184 2-42 (148)
223 PRK06921 hypothetical protein; 97.0 0.014 3.1E-07 55.3 13.6 44 136-187 117-160 (266)
224 COG1419 FlhF Flagellar GTP-bin 97.0 0.016 3.4E-07 57.1 13.2 135 136-302 203-339 (407)
225 PRK05703 flhF flagellar biosyn 97.0 0.032 6.9E-07 56.7 16.0 129 136-299 221-355 (424)
226 KOG1131 RNA polymerase II tran 97.0 0.016 3.4E-07 58.1 13.1 72 119-194 14-89 (755)
227 cd01124 KaiC KaiC is a circadi 96.9 0.0087 1.9E-07 53.6 10.6 49 139-196 2-50 (187)
228 PRK14712 conjugal transfer nic 96.9 0.009 2E-07 69.0 12.6 65 120-188 834-900 (1623)
229 PHA02533 17 large terminase pr 96.9 0.0072 1.6E-07 63.0 10.8 149 120-287 58-210 (534)
230 PF14617 CMS1: U3-containing 9 96.9 0.0032 6.8E-08 58.5 7.3 86 171-257 125-212 (252)
231 PRK13709 conjugal transfer nic 96.8 0.014 3E-07 68.4 13.6 127 120-286 966-1099(1747)
232 KOG1133 Helicase of the DEAD s 96.8 0.085 1.8E-06 54.9 17.6 210 247-485 527-804 (821)
233 PRK08769 DNA polymerase III su 96.8 0.012 2.6E-07 57.1 11.1 143 120-286 3-152 (319)
234 PRK06731 flhF flagellar biosyn 96.7 0.047 1E-06 51.7 14.1 129 136-299 75-209 (270)
235 PRK08727 hypothetical protein; 96.7 0.012 2.6E-07 54.8 10.0 47 245-291 92-140 (233)
236 KOG0701 dsRNA-specific nucleas 96.7 0.0018 4E-08 73.7 5.2 93 346-438 294-398 (1606)
237 cd01120 RecA-like_NTPases RecA 96.7 0.014 3E-07 50.6 9.9 38 139-184 2-39 (165)
238 PRK12377 putative replication 96.7 0.038 8.2E-07 51.7 12.9 107 136-290 101-209 (248)
239 PRK06893 DNA replication initi 96.6 0.0063 1.4E-07 56.5 7.6 45 245-289 90-136 (229)
240 PRK05642 DNA replication initi 96.6 0.013 2.8E-07 54.7 9.5 44 245-288 96-140 (234)
241 PRK14086 dnaA chromosomal repl 96.6 0.011 2.4E-07 61.9 9.6 108 138-292 316-425 (617)
242 PRK09183 transposase/IS protei 96.6 0.03 6.5E-07 53.0 11.7 48 132-188 98-145 (259)
243 COG2256 MGS1 ATPase related to 96.6 0.0073 1.6E-07 58.8 7.5 19 137-155 49-67 (436)
244 PRK06835 DNA replication prote 96.5 0.06 1.3E-06 52.7 13.7 111 135-292 182-294 (329)
245 COG1484 DnaC DNA replication p 96.5 0.022 4.8E-07 53.6 10.4 51 135-194 104-154 (254)
246 TIGR01075 uvrD DNA helicase II 96.5 0.015 3.4E-07 63.5 10.7 71 120-196 3-73 (715)
247 PRK12727 flagellar biosynthesi 96.5 0.22 4.8E-06 51.4 17.9 129 135-298 349-481 (559)
248 PRK07003 DNA polymerase III su 96.5 0.021 4.6E-07 60.8 10.9 39 245-284 118-156 (830)
249 PRK14723 flhF flagellar biosyn 96.5 0.037 8E-07 59.6 12.9 139 137-310 186-333 (767)
250 PRK12422 chromosomal replicati 96.5 0.017 3.7E-07 59.0 10.0 109 137-294 142-252 (445)
251 PRK00149 dnaA chromosomal repl 96.5 0.071 1.5E-06 55.0 14.7 110 137-293 149-260 (450)
252 TIGR03420 DnaA_homol_Hda DnaA 96.5 0.021 4.6E-07 52.8 9.9 21 135-155 37-57 (226)
253 PF05496 RuvB_N: Holliday junc 96.4 0.013 2.7E-07 53.2 7.8 18 138-155 52-69 (233)
254 PRK11773 uvrD DNA-dependent he 96.4 0.018 3.9E-07 63.0 10.7 70 121-196 9-78 (721)
255 PRK00771 signal recognition pa 96.4 0.034 7.5E-07 56.4 11.8 53 247-299 176-229 (437)
256 PRK08084 DNA replication initi 96.4 0.013 2.8E-07 54.7 8.2 44 247-290 98-144 (235)
257 PF13177 DNA_pol3_delta2: DNA 96.4 0.023 4.9E-07 49.6 9.3 43 245-288 101-143 (162)
258 TIGR02760 TraI_TIGR conjugativ 96.4 0.021 4.6E-07 68.5 11.8 62 120-188 1018-1084(1960)
259 PRK07764 DNA polymerase III su 96.4 0.021 4.6E-07 62.6 10.8 39 245-284 119-157 (824)
260 PRK06964 DNA polymerase III su 96.4 0.021 4.6E-07 56.0 9.7 42 244-286 130-171 (342)
261 PRK11054 helD DNA helicase IV; 96.4 0.016 3.5E-07 62.4 9.7 78 120-203 195-272 (684)
262 PF05127 Helicase_RecD: Helica 96.3 0.0035 7.5E-08 55.0 3.4 123 140-287 1-123 (177)
263 PRK12402 replication factor C 96.3 0.031 6.8E-07 55.2 10.7 40 245-285 124-163 (337)
264 PF00308 Bac_DnaA: Bacterial d 96.3 0.012 2.7E-07 54.1 7.3 107 138-291 36-144 (219)
265 PRK14956 DNA polymerase III su 96.3 0.014 3E-07 59.4 8.0 17 139-155 43-59 (484)
266 cd00561 CobA_CobO_BtuR ATP:cor 96.3 0.044 9.5E-07 47.3 10.0 53 244-296 93-147 (159)
267 PRK14088 dnaA chromosomal repl 96.3 0.069 1.5E-06 54.7 13.2 113 138-296 132-246 (440)
268 PRK14964 DNA polymerase III su 96.3 0.072 1.5E-06 54.8 13.1 40 244-284 114-153 (491)
269 PF03354 Terminase_1: Phage Te 96.3 0.013 2.7E-07 61.0 7.9 149 124-284 1-160 (477)
270 PRK10917 ATP-dependent DNA hel 96.3 0.022 4.8E-07 61.8 10.0 86 333-418 299-389 (681)
271 PRK12323 DNA polymerase III su 96.2 0.035 7.6E-07 58.4 10.8 42 244-286 122-163 (700)
272 PRK14958 DNA polymerase III su 96.2 0.046 9.9E-07 56.9 11.7 39 245-284 118-156 (509)
273 PRK08903 DnaA regulatory inact 96.2 0.025 5.5E-07 52.4 9.0 43 246-289 90-133 (227)
274 TIGR02881 spore_V_K stage V sp 96.2 0.024 5.1E-07 53.9 8.8 19 137-155 43-61 (261)
275 PRK10919 ATP-dependent DNA hel 96.2 0.026 5.7E-07 61.1 10.1 71 121-197 2-72 (672)
276 TIGR00362 DnaA chromosomal rep 96.2 0.07 1.5E-06 54.3 12.7 109 138-293 138-248 (405)
277 PRK07994 DNA polymerase III su 96.2 0.053 1.2E-06 57.6 11.8 38 245-283 118-155 (647)
278 PRK06645 DNA polymerase III su 96.1 0.025 5.4E-07 58.5 9.0 24 138-162 45-68 (507)
279 PRK08699 DNA polymerase III su 96.1 0.039 8.5E-07 54.0 9.9 40 122-162 2-46 (325)
280 PHA02544 44 clamp loader, smal 96.1 0.026 5.7E-07 55.3 8.7 40 246-285 100-139 (316)
281 PRK11331 5-methylcytosine-spec 96.1 0.023 4.9E-07 57.3 8.1 33 122-154 180-212 (459)
282 PRK14087 dnaA chromosomal repl 96.1 0.031 6.7E-07 57.3 9.4 109 138-291 143-253 (450)
283 PRK06871 DNA polymerase III su 96.0 0.055 1.2E-06 52.7 10.5 42 244-286 105-146 (325)
284 PRK14960 DNA polymerase III su 96.0 0.037 8E-07 58.3 9.8 39 245-284 117-155 (702)
285 TIGR01425 SRP54_euk signal rec 96.0 0.071 1.5E-06 53.7 11.6 54 246-299 182-236 (429)
286 PRK12726 flagellar biosynthesi 96.0 0.12 2.5E-06 51.1 12.6 129 136-298 206-339 (407)
287 PTZ00112 origin recognition co 96.0 0.075 1.6E-06 57.5 12.0 23 139-162 784-806 (1164)
288 PTZ00293 thymidine kinase; Pro 96.0 0.055 1.2E-06 48.9 9.6 38 136-181 4-41 (211)
289 PLN03025 replication factor C 96.0 0.078 1.7E-06 52.0 11.6 38 246-284 99-136 (319)
290 PRK07993 DNA polymerase III su 96.0 0.032 7E-07 54.7 8.7 137 121-286 2-147 (334)
291 TIGR01074 rep ATP-dependent DN 95.9 0.045 9.7E-07 59.6 10.6 70 122-197 2-71 (664)
292 TIGR00064 ftsY signal recognit 95.9 0.16 3.5E-06 48.4 13.0 55 245-299 153-214 (272)
293 PRK08691 DNA polymerase III su 95.9 0.084 1.8E-06 56.2 11.9 40 244-284 117-156 (709)
294 PHA03333 putative ATPase subun 95.9 0.15 3.2E-06 53.8 13.4 69 122-197 170-241 (752)
295 COG1435 Tdk Thymidine kinase [ 95.9 0.14 3E-06 45.2 11.2 101 139-272 7-107 (201)
296 TIGR01547 phage_term_2 phage t 95.9 0.026 5.6E-07 57.3 7.8 146 138-299 3-152 (396)
297 PRK08533 flagellar accessory p 95.9 0.071 1.5E-06 49.5 10.1 53 135-196 23-75 (230)
298 COG0470 HolB ATPase involved i 95.9 0.046 1E-06 53.6 9.5 40 245-285 108-147 (325)
299 PRK14961 DNA polymerase III su 95.8 0.08 1.7E-06 52.9 11.0 39 245-284 118-156 (363)
300 COG3973 Superfamily I DNA and 95.8 0.084 1.8E-06 54.2 10.9 92 104-197 187-285 (747)
301 TIGR00643 recG ATP-dependent D 95.8 0.037 8.1E-07 59.6 9.2 85 334-418 274-363 (630)
302 PRK14949 DNA polymerase III su 95.8 0.086 1.9E-06 57.5 11.6 38 245-283 118-155 (944)
303 PRK05986 cob(I)alamin adenolsy 95.8 0.045 9.7E-07 48.6 8.0 146 135-297 21-168 (191)
304 PF00004 AAA: ATPase family as 95.8 0.078 1.7E-06 44.1 9.2 16 139-154 1-16 (132)
305 PRK06090 DNA polymerase III su 95.8 0.059 1.3E-06 52.3 9.3 136 121-286 3-147 (319)
306 PRK08939 primosomal protein Dn 95.7 0.27 5.8E-06 47.7 13.6 108 136-292 156-266 (306)
307 TIGR03015 pepcterm_ATPase puta 95.6 0.049 1.1E-06 51.9 8.4 34 121-154 23-61 (269)
308 PF13173 AAA_14: AAA domain 95.6 0.11 2.4E-06 43.2 9.5 38 246-286 61-98 (128)
309 CHL00181 cbbX CbbX; Provisiona 95.6 0.15 3.3E-06 49.0 11.6 20 136-155 59-78 (287)
310 PRK13342 recombination factor 95.6 0.081 1.8E-06 53.9 10.2 18 138-155 38-55 (413)
311 PRK14965 DNA polymerase III su 95.6 0.14 3.1E-06 54.3 12.4 40 244-284 117-156 (576)
312 TIGR03877 thermo_KaiC_1 KaiC d 95.6 0.054 1.2E-06 50.6 8.3 52 136-196 21-72 (237)
313 TIGR00708 cobA cob(I)alamin ad 95.6 0.07 1.5E-06 46.7 8.2 52 245-296 96-149 (173)
314 PRK14959 DNA polymerase III su 95.6 0.066 1.4E-06 56.5 9.5 18 138-155 40-57 (624)
315 PRK14721 flhF flagellar biosyn 95.6 0.22 4.8E-06 50.2 12.9 172 136-355 191-364 (420)
316 PRK14969 DNA polymerase III su 95.6 0.065 1.4E-06 56.1 9.6 40 244-284 117-156 (527)
317 PRK07940 DNA polymerase III su 95.6 0.072 1.6E-06 53.5 9.5 42 244-286 115-156 (394)
318 PRK12724 flagellar biosynthesi 95.5 0.25 5.5E-06 49.5 13.0 54 245-298 298-356 (432)
319 PRK00411 cdc6 cell division co 95.5 0.14 3E-06 51.9 11.7 26 137-163 56-81 (394)
320 TIGR03881 KaiC_arch_4 KaiC dom 95.5 0.1 2.2E-06 48.4 9.8 53 135-196 19-71 (229)
321 PRK14952 DNA polymerase III su 95.5 0.11 2.4E-06 54.7 11.0 40 244-284 116-155 (584)
322 PF05621 TniB: Bacterial TniB 95.5 0.049 1.1E-06 51.8 7.4 53 137-193 62-117 (302)
323 PRK09111 DNA polymerase III su 95.5 0.085 1.8E-06 55.9 10.0 40 244-284 130-169 (598)
324 PRK05580 primosome assembly pr 95.5 0.13 2.8E-06 55.8 11.7 94 326-420 171-266 (679)
325 TIGR02785 addA_Gpos recombinat 95.4 0.069 1.5E-06 61.9 10.0 123 122-257 2-126 (1232)
326 PHA00729 NTP-binding motif con 95.4 0.12 2.6E-06 47.2 9.6 77 223-299 59-140 (226)
327 cd01122 GP4d_helicase GP4d_hel 95.4 0.054 1.2E-06 51.7 7.8 40 134-180 28-67 (271)
328 PRK14957 DNA polymerase III su 95.4 0.21 4.6E-06 52.2 12.5 40 244-284 117-156 (546)
329 KOG0991 Replication factor C, 95.4 0.061 1.3E-06 48.6 7.2 41 245-286 112-152 (333)
330 PRK14950 DNA polymerase III su 95.4 0.22 4.7E-06 53.2 12.9 39 244-283 118-156 (585)
331 PRK11823 DNA repair protein Ra 95.4 0.093 2E-06 53.8 9.7 88 136-260 80-170 (446)
332 COG1444 Predicted P-loop ATPas 95.4 0.1 2.3E-06 55.7 10.2 139 123-287 213-356 (758)
333 PRK14955 DNA polymerase III su 95.4 0.21 4.5E-06 50.6 12.2 40 244-284 125-164 (397)
334 PRK07471 DNA polymerase III su 95.4 0.12 2.6E-06 51.5 10.1 136 138-287 43-181 (365)
335 PRK05896 DNA polymerase III su 95.3 0.09 2E-06 55.2 9.5 39 245-284 118-156 (605)
336 TIGR00595 priA primosomal prot 95.3 0.1 2.2E-06 54.4 10.0 92 328-420 8-101 (505)
337 PRK13341 recombination factor 95.3 0.093 2E-06 56.9 9.9 40 246-290 109-148 (725)
338 cd01121 Sms Sms (bacterial rad 95.3 0.12 2.5E-06 51.6 9.8 90 136-259 82-171 (372)
339 TIGR02880 cbbX_cfxQ probable R 95.3 0.083 1.8E-06 50.7 8.5 20 136-155 58-77 (284)
340 PF05876 Terminase_GpA: Phage 95.3 0.025 5.4E-07 59.6 5.3 68 121-195 16-86 (557)
341 TIGR00580 mfd transcription-re 95.3 0.084 1.8E-06 58.8 9.6 82 337-418 493-579 (926)
342 PF02572 CobA_CobO_BtuR: ATP:c 95.2 0.25 5.3E-06 43.3 10.5 141 139-296 6-148 (172)
343 PRK05973 replicative DNA helic 95.2 0.12 2.7E-06 47.8 9.0 56 132-196 60-115 (237)
344 PRK13833 conjugal transfer pro 95.2 0.075 1.6E-06 51.7 7.9 66 112-185 121-187 (323)
345 PRK14951 DNA polymerase III su 95.2 0.13 2.8E-06 54.6 10.1 40 244-284 122-161 (618)
346 PRK14873 primosome assembly pr 95.1 0.16 3.5E-06 54.5 10.8 93 327-420 170-265 (665)
347 PRK14954 DNA polymerase III su 95.1 0.3 6.6E-06 52.0 12.6 40 244-284 125-164 (620)
348 cd00984 DnaB_C DnaB helicase C 95.1 0.075 1.6E-06 49.8 7.4 39 135-180 12-50 (242)
349 cd03115 SRP The signal recogni 95.1 0.38 8.3E-06 42.3 11.6 54 245-298 81-135 (173)
350 PRK09112 DNA polymerase III su 95.1 0.19 4E-06 49.8 10.4 42 244-286 139-180 (351)
351 COG0593 DnaA ATPase involved i 95.1 0.13 2.9E-06 51.2 9.3 47 246-292 175-223 (408)
352 PF06745 KaiC: KaiC; InterPro 95.0 0.1 2.2E-06 48.3 8.2 125 136-286 19-159 (226)
353 TIGR01073 pcrA ATP-dependent D 95.0 0.12 2.7E-06 56.7 10.0 72 120-197 3-74 (726)
354 TIGR03499 FlhF flagellar biosy 95.0 0.084 1.8E-06 50.7 7.7 19 137-155 195-213 (282)
355 PHA03368 DNA packaging termina 95.0 0.11 2.3E-06 54.6 8.7 130 137-286 255-389 (738)
356 KOG0745 Putative ATP-dependent 95.0 0.035 7.6E-07 54.7 4.8 26 136-163 226-251 (564)
357 PRK06067 flagellar accessory p 95.0 0.39 8.4E-06 44.7 11.9 52 136-196 25-76 (234)
358 PRK04195 replication factor C 95.0 0.2 4.3E-06 52.2 10.8 19 136-154 39-57 (482)
359 TIGR02639 ClpA ATP-dependent C 95.0 0.45 9.7E-06 52.3 14.0 19 137-155 204-222 (731)
360 COG0552 FtsY Signal recognitio 94.9 0.41 9E-06 46.0 11.7 129 139-298 142-280 (340)
361 TIGR02524 dot_icm_DotB Dot/Icm 94.9 0.076 1.6E-06 52.7 7.1 28 135-163 133-160 (358)
362 PRK10867 signal recognition pa 94.9 0.32 7E-06 49.4 11.7 18 138-155 102-119 (433)
363 COG4962 CpaF Flp pilus assembl 94.9 0.081 1.7E-06 51.0 6.9 60 117-185 153-213 (355)
364 PRK05563 DNA polymerase III su 94.8 0.12 2.7E-06 54.5 8.9 18 138-155 40-57 (559)
365 PRK06995 flhF flagellar biosyn 94.8 0.12 2.6E-06 53.0 8.5 19 137-155 257-275 (484)
366 TIGR02928 orc1/cdc6 family rep 94.8 0.22 4.8E-06 49.8 10.4 25 137-162 41-65 (365)
367 PRK13894 conjugal transfer ATP 94.8 0.1 2.2E-06 50.8 7.6 66 111-184 124-190 (319)
368 PRK14962 DNA polymerase III su 94.8 0.2 4.4E-06 51.6 10.1 17 139-155 39-55 (472)
369 PRK14963 DNA polymerase III su 94.7 0.12 2.7E-06 53.6 8.6 23 139-162 39-61 (504)
370 PRK11034 clpA ATP-dependent Cl 94.7 0.28 6.1E-06 53.5 11.6 20 136-155 207-226 (758)
371 KOG1513 Nuclear helicase MOP-3 94.7 0.031 6.7E-07 58.7 3.8 80 388-467 851-942 (1300)
372 COG1474 CDC6 Cdc6-related prot 94.7 0.39 8.4E-06 47.8 11.5 26 137-163 43-68 (366)
373 PRK00440 rfc replication facto 94.6 0.44 9.5E-06 46.6 12.0 39 246-285 102-140 (319)
374 COG4626 Phage terminase-like p 94.6 0.19 4.1E-06 51.5 9.3 145 120-285 60-223 (546)
375 TIGR00959 ffh signal recogniti 94.6 0.34 7.5E-06 49.1 11.1 54 246-299 182-236 (428)
376 TIGR02782 TrbB_P P-type conjug 94.6 0.14 3.1E-06 49.4 8.1 67 111-185 108-175 (299)
377 TIGR02525 plasmid_TraJ plasmid 94.6 0.11 2.4E-06 51.6 7.4 43 136-184 149-191 (372)
378 COG1200 RecG RecG-like helicas 94.5 0.19 4.1E-06 52.7 9.2 89 329-417 296-389 (677)
379 KOG0741 AAA+-type ATPase [Post 94.4 0.2 4.4E-06 50.7 8.7 58 94-154 211-274 (744)
380 PRK14948 DNA polymerase III su 94.4 0.2 4.3E-06 53.5 9.3 24 138-162 40-63 (620)
381 PRK10416 signal recognition pa 94.3 0.6 1.3E-05 45.5 11.9 55 245-299 195-256 (318)
382 COG2804 PulE Type II secretory 94.3 0.072 1.6E-06 53.9 5.4 40 123-163 243-284 (500)
383 PRK07399 DNA polymerase III su 94.3 0.3 6.5E-06 47.6 9.6 59 225-286 104-162 (314)
384 PF02456 Adeno_IVa2: Adenoviru 94.2 0.12 2.6E-06 48.8 6.3 40 139-184 90-129 (369)
385 KOG2028 ATPase related to the 94.2 0.098 2.1E-06 50.5 5.8 18 138-155 164-181 (554)
386 TIGR03878 thermo_KaiC_2 KaiC d 94.2 0.32 6.9E-06 46.1 9.5 52 136-195 36-90 (259)
387 TIGR00678 holB DNA polymerase 94.2 0.31 6.8E-06 43.6 9.1 40 244-284 94-133 (188)
388 PF01695 IstB_IS21: IstB-like 94.2 0.12 2.5E-06 45.9 6.1 49 131-188 42-90 (178)
389 KOG0738 AAA+-type ATPase [Post 94.1 2.5 5.4E-05 41.6 15.0 16 137-152 246-261 (491)
390 PF03969 AFG1_ATPase: AFG1-lik 94.1 1.1 2.4E-05 44.5 13.4 110 136-291 62-172 (362)
391 PRK04328 hypothetical protein; 94.1 0.38 8.3E-06 45.2 9.7 52 136-196 23-74 (249)
392 COG2909 MalT ATP-dependent tra 94.1 0.13 2.9E-06 55.0 7.1 42 247-288 130-171 (894)
393 COG1198 PriA Primosomal protei 94.0 0.19 4.1E-06 54.1 8.1 96 321-417 221-318 (730)
394 PRK08451 DNA polymerase III su 93.9 0.43 9.4E-06 49.7 10.3 40 244-284 115-154 (535)
395 COG2255 RuvB Holliday junction 93.9 0.32 7E-06 45.5 8.3 18 138-155 54-71 (332)
396 PRK10689 transcription-repair 93.9 0.3 6.4E-06 55.9 9.8 76 342-417 647-727 (1147)
397 PRK13900 type IV secretion sys 93.8 0.19 4.1E-06 49.3 7.2 44 133-185 157-200 (332)
398 TIGR01420 pilT_fam pilus retra 93.8 0.19 4.2E-06 49.7 7.3 42 136-184 122-163 (343)
399 PRK10436 hypothetical protein; 93.7 0.16 3.5E-06 52.1 6.8 40 123-163 203-244 (462)
400 TIGR03689 pup_AAA proteasome A 93.7 0.27 5.8E-06 51.0 8.3 18 136-153 216-233 (512)
401 TIGR03345 VI_ClpV1 type VI sec 93.6 0.81 1.8E-05 51.0 12.6 30 126-155 192-227 (852)
402 PRK04841 transcriptional regul 93.6 0.71 1.5E-05 52.3 12.4 43 246-288 121-163 (903)
403 PF06733 DEAD_2: DEAD_2; Inte 93.6 0.047 1E-06 48.3 2.3 46 216-261 113-160 (174)
404 PF03237 Terminase_6: Terminas 93.5 0.98 2.1E-05 45.0 12.2 145 140-302 1-154 (384)
405 TIGR03600 phage_DnaB phage rep 93.5 1.2 2.5E-05 45.6 12.8 37 136-179 194-230 (421)
406 PRK07133 DNA polymerase III su 93.5 0.83 1.8E-05 49.3 11.9 40 244-284 116-155 (725)
407 TIGR03346 chaperone_ClpB ATP-d 93.5 1 2.3E-05 50.3 13.3 19 137-155 195-213 (852)
408 TIGR02655 circ_KaiC circadian 93.5 0.55 1.2E-05 48.9 10.4 60 128-196 250-314 (484)
409 KOG0298 DEAD box-containing he 93.4 0.11 2.5E-06 57.5 5.3 99 344-446 1221-1319(1394)
410 COG2109 BtuR ATP:corrinoid ade 93.4 1.1 2.3E-05 39.5 10.1 52 246-297 122-175 (198)
411 CHL00095 clpC Clp protease ATP 93.3 0.82 1.8E-05 51.0 12.0 19 137-155 201-219 (821)
412 PRK13851 type IV secretion sys 93.2 0.13 2.9E-06 50.5 5.1 44 133-185 159-202 (344)
413 KOG1133 Helicase of the DEAD s 93.2 0.13 2.9E-06 53.5 5.1 44 120-163 14-61 (821)
414 COG3267 ExeA Type II secretory 93.2 0.68 1.5E-05 42.8 9.1 21 134-154 48-69 (269)
415 PRK07414 cob(I)yrinic acid a,c 93.2 1.4 3E-05 38.7 10.7 52 245-296 114-167 (178)
416 PF05729 NACHT: NACHT domain 93.2 0.76 1.7E-05 39.7 9.5 25 138-163 2-26 (166)
417 PHA00012 I assembly protein 93.1 2.7 5.9E-05 40.5 13.4 25 139-163 4-28 (361)
418 PRK06305 DNA polymerase III su 93.1 1 2.2E-05 46.4 11.5 39 245-284 120-158 (451)
419 TIGR03880 KaiC_arch_3 KaiC dom 93.1 0.48 1E-05 43.7 8.4 52 136-196 16-67 (224)
420 COG3972 Superfamily I DNA and 93.0 0.71 1.5E-05 46.5 9.6 144 109-260 151-309 (660)
421 COG1222 RPT1 ATP-dependent 26S 93.0 0.68 1.5E-05 44.9 9.2 18 136-153 185-202 (406)
422 COG1219 ClpX ATP-dependent pro 93.0 0.11 2.4E-06 49.3 3.9 28 134-163 95-122 (408)
423 PRK08058 DNA polymerase III su 93.0 0.84 1.8E-05 44.9 10.4 41 244-285 108-148 (329)
424 PF01443 Viral_helicase1: Vira 93.0 0.099 2.1E-06 48.6 3.6 14 139-152 1-14 (234)
425 TIGR00416 sms DNA repair prote 92.9 0.73 1.6E-05 47.4 10.1 98 129-260 82-184 (454)
426 TIGR02012 tigrfam_recA protein 92.8 0.24 5.2E-06 48.1 6.2 43 136-186 55-97 (321)
427 PRK13764 ATPase; Provisional 92.8 0.24 5.1E-06 52.3 6.5 42 135-184 256-297 (602)
428 PRK03992 proteasome-activating 92.8 0.36 7.9E-06 48.7 7.7 18 137-154 166-183 (389)
429 TIGR02688 conserved hypothetic 92.8 0.59 1.3E-05 46.8 8.9 25 131-155 204-228 (449)
430 PRK06647 DNA polymerase III su 92.8 1.1 2.5E-05 47.3 11.6 38 244-282 117-154 (563)
431 KOG1513 Nuclear helicase MOP-3 92.8 0.2 4.3E-06 53.0 5.7 153 120-286 263-453 (1300)
432 TIGR01243 CDC48 AAA family ATP 92.7 0.4 8.6E-06 52.8 8.5 18 137-154 488-505 (733)
433 PRK09354 recA recombinase A; P 92.7 0.34 7.3E-06 47.5 7.0 43 136-186 60-102 (349)
434 PRK06904 replicative DNA helic 92.7 1.9 4.1E-05 44.6 12.8 114 137-260 222-348 (472)
435 PRK14971 DNA polymerase III su 92.7 0.62 1.3E-05 49.8 9.5 42 243-286 118-159 (614)
436 TIGR02397 dnaX_nterm DNA polym 92.6 0.95 2E-05 45.0 10.3 24 138-162 38-61 (355)
437 TIGR00635 ruvB Holliday juncti 92.5 0.22 4.7E-06 48.5 5.5 18 137-154 31-48 (305)
438 cd01125 repA Hexameric Replica 92.5 1 2.2E-05 42.0 9.8 56 138-193 3-65 (239)
439 COG1110 Reverse gyrase [DNA re 92.4 0.4 8.8E-06 52.4 7.6 71 333-404 115-191 (1187)
440 TIGR00767 rho transcription te 92.4 0.65 1.4E-05 46.3 8.6 26 135-161 167-192 (415)
441 PF03796 DnaB_C: DnaB-like hel 92.4 0.57 1.2E-05 44.3 8.1 112 136-261 19-145 (259)
442 PRK14953 DNA polymerase III su 92.4 0.69 1.5E-05 48.0 9.2 39 244-283 117-155 (486)
443 KOG0741 AAA+-type ATPase [Post 92.4 1.4 3E-05 45.0 10.7 69 104-182 494-574 (744)
444 PHA03372 DNA packaging termina 92.4 0.74 1.6E-05 47.9 9.1 124 137-286 203-336 (668)
445 PF02534 T4SS-DNA_transf: Type 92.2 0.16 3.5E-06 52.7 4.4 50 137-196 45-94 (469)
446 PRK10865 protein disaggregatio 92.1 0.66 1.4E-05 51.8 9.3 19 137-155 200-218 (857)
447 COG1221 PspF Transcriptional r 92.1 0.97 2.1E-05 45.1 9.3 22 133-154 98-119 (403)
448 PRK13897 type IV secretion sys 92.1 0.19 4E-06 53.3 4.6 50 137-196 159-208 (606)
449 KOG2543 Origin recognition com 92.0 1.5 3.2E-05 43.0 10.2 46 245-290 114-161 (438)
450 TIGR02868 CydC thiol reductant 92.0 0.27 5.9E-06 52.0 5.8 41 244-284 486-526 (529)
451 cd01129 PulE-GspE PulE/GspE Th 91.9 0.37 8.1E-06 45.7 6.1 54 123-184 65-120 (264)
452 cd01128 rho_factor Transcripti 91.9 0.5 1.1E-05 44.3 6.8 20 133-152 13-32 (249)
453 cd01126 TraG_VirD4 The TraG/Tr 91.9 0.13 2.9E-06 51.8 3.2 48 138-195 1-48 (384)
454 TIGR02858 spore_III_AA stage I 91.8 0.91 2E-05 43.1 8.6 25 128-152 100-127 (270)
455 PRK14970 DNA polymerase III su 91.8 0.96 2.1E-05 45.3 9.3 24 138-162 41-64 (367)
456 TIGR00614 recQ_fam ATP-depende 91.7 3.1 6.6E-05 43.3 13.2 76 343-418 50-133 (470)
457 PF00437 T2SE: Type II/IV secr 91.7 0.27 5.8E-06 46.9 5.0 43 134-184 125-167 (270)
458 COG0466 Lon ATP-dependent Lon 91.7 3 6.5E-05 44.4 12.6 65 206-275 382-446 (782)
459 TIGR01243 CDC48 AAA family ATP 91.6 1.1 2.4E-05 49.3 10.3 18 136-153 212-229 (733)
460 COG1197 Mfd Transcription-repa 91.5 0.98 2.1E-05 50.5 9.4 82 336-417 635-721 (1139)
461 KOG0740 AAA+-type ATPase [Post 91.4 0.69 1.5E-05 46.4 7.6 53 245-297 244-309 (428)
462 COG1485 Predicted ATPase [Gene 91.3 5.3 0.00012 38.9 13.0 109 137-291 66-175 (367)
463 PRK09087 hypothetical protein; 91.3 0.62 1.4E-05 43.0 6.8 41 248-290 89-130 (226)
464 cd01130 VirB11-like_ATPase Typ 91.2 0.48 1E-05 42.3 5.8 32 121-152 9-41 (186)
465 PRK09376 rho transcription ter 91.2 1.4 3.1E-05 43.8 9.3 28 135-163 168-195 (416)
466 TIGR00763 lon ATP-dependent pr 91.0 2.4 5.3E-05 46.9 12.1 19 136-154 347-365 (775)
467 TIGR02533 type_II_gspE general 90.9 0.45 9.7E-06 49.3 5.9 39 123-162 227-267 (486)
468 PRK00080 ruvB Holliday junctio 90.7 0.62 1.3E-05 45.8 6.6 18 137-154 52-69 (328)
469 PF12846 AAA_10: AAA-like doma 90.6 0.41 8.9E-06 46.2 5.2 42 137-186 2-43 (304)
470 COG2812 DnaX DNA polymerase II 90.5 0.56 1.2E-05 48.4 6.1 41 243-286 116-156 (515)
471 PTZ00146 fibrillarin; Provisio 90.4 5 0.00011 38.4 12.0 36 120-155 108-151 (293)
472 PRK05564 DNA polymerase III su 90.4 2.2 4.7E-05 41.7 10.1 40 244-284 91-130 (313)
473 PRK08840 replicative DNA helic 90.4 3.7 8.1E-05 42.4 12.1 49 136-192 217-265 (464)
474 PF13481 AAA_25: AAA domain; P 90.4 1.7 3.6E-05 38.9 8.6 61 135-196 31-93 (193)
475 CHL00176 ftsH cell division pr 90.4 2.7 5.8E-05 45.2 11.3 18 137-154 217-234 (638)
476 COG0630 VirB11 Type IV secreto 90.3 0.5 1.1E-05 46.0 5.4 56 120-184 126-182 (312)
477 KOG0733 Nuclear AAA ATPase (VC 90.3 1 2.3E-05 46.7 7.7 53 97-152 506-561 (802)
478 cd01393 recA_like RecA is a b 90.2 1.4 3E-05 40.6 8.2 44 136-181 19-62 (226)
479 TIGR02538 type_IV_pilB type IV 90.1 0.62 1.3E-05 49.4 6.3 39 123-162 301-341 (564)
480 COG0467 RAD55 RecA-superfamily 90.1 0.61 1.3E-05 44.2 5.7 55 135-198 22-76 (260)
481 PF10593 Z1: Z1 domain; Inter 90.0 0.7 1.5E-05 43.0 5.9 103 368-479 110-217 (239)
482 KOG0739 AAA+-type ATPase [Post 90.0 3.2 7E-05 39.3 9.9 83 95-195 126-213 (439)
483 cd01131 PilT Pilus retraction 90.0 0.48 1E-05 42.8 4.7 39 139-184 4-42 (198)
484 PLN00020 ribulose bisphosphate 90.0 0.47 1E-05 46.6 4.8 19 137-155 149-167 (413)
485 COG1132 MdlB ABC-type multidru 89.9 0.65 1.4E-05 49.5 6.4 41 244-284 481-521 (567)
486 TIGR01241 FtsH_fam ATP-depende 89.9 1.5 3.2E-05 45.9 8.9 18 137-154 89-106 (495)
487 PRK08506 replicative DNA helic 89.8 2.7 5.8E-05 43.6 10.5 113 136-260 192-316 (472)
488 KOG0780 Signal recognition par 89.7 2.8 6.1E-05 41.2 9.6 55 245-299 182-237 (483)
489 KOG0344 ATP-dependent RNA heli 89.7 5.2 0.00011 41.4 12.0 99 144-257 365-467 (593)
490 COG0513 SrmB Superfamily II DN 89.7 1.6 3.6E-05 45.7 9.0 68 347-418 102-180 (513)
491 TIGR00665 DnaB replicative DNA 89.7 3.5 7.7E-05 42.3 11.4 113 136-260 195-319 (434)
492 PRK13850 type IV secretion sys 89.7 0.31 6.6E-06 52.4 3.6 50 137-196 140-189 (670)
493 PRK08760 replicative DNA helic 89.4 2.2 4.8E-05 44.2 9.6 110 138-259 231-352 (476)
494 PRK14701 reverse gyrase; Provi 89.3 1.4 3E-05 52.3 8.9 61 343-403 121-187 (1638)
495 COG5008 PilU Tfp pilus assembl 89.3 0.81 1.8E-05 42.4 5.5 23 139-162 130-152 (375)
496 cd03239 ABC_SMC_head The struc 89.2 0.47 1E-05 42.1 4.0 42 245-286 115-157 (178)
497 TIGR03743 SXT_TraD conjugative 89.2 1.1 2.4E-05 48.0 7.4 55 136-198 176-232 (634)
498 PRK08006 replicative DNA helic 89.1 6 0.00013 41.0 12.5 113 137-259 225-349 (471)
499 KOG0058 Peptide exporter, ABC 89.1 2.8 6E-05 44.6 9.9 41 244-285 620-660 (716)
500 KOG0742 AAA+-type ATPase [Post 89.1 1.2 2.7E-05 43.9 6.8 16 137-152 385-400 (630)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-87 Score=657.83 Aligned_cols=433 Identities=65% Similarity=1.067 Sum_probs=408.7
Q ss_pred CCCCCccccccccCccccCCCHHHHHHHHHhcCceeecCC-CCCCCCCCcCCC---------------------------
Q 010649 54 DGLTPFEKNFYVESPSVAAMSEREVEEYRQQREITVEGRD-VPKPVKSFRDVG--------------------------- 105 (505)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~p~~~~~f~~~~--------------------------- 105 (505)
..+.++++++|.+++.+......+.+.+++..++++++.+ +|.|+.+|++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 95 (519)
T KOG0331|consen 16 LDLSPFDKNFYKEHPSVKKRGSAEVERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSAAFQE 95 (519)
T ss_pred cccCcccccccccccccccccccccccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccCCcchhhhc
Confidence 5678899999999999999999999999999999988766 888888776544
Q ss_pred --CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhc-CCCCCCCCCCEEEEEcccH
Q 010649 106 --FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNA-QPFLAPGDGPIVLVLAPTR 182 (505)
Q Consensus 106 --l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~-~~~~~~~~~~~vlil~Pt~ 182 (505)
+++.+...++..+|..|+|+|.++||.+++|+|++.+|.||||||++|++|++.++.. +.....+++|++|||+|||
T Consensus 96 ~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTR 175 (519)
T KOG0331|consen 96 LGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTR 175 (519)
T ss_pred ccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcH
Confidence 4455566677999999999999999999999999999999999999999999999998 6777788899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCC
Q 010649 183 ELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG 262 (505)
Q Consensus 183 ~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~ 262 (505)
|||.|+++.+.+|+....+++.|+|||.+...|...+.++++|+|+||++|+++++....+|++++|+|+||||+|++++
T Consensus 176 ELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmG 255 (519)
T KOG0331|consen 176 ELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMG 255 (519)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhc-CCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCC-CcccccceeeeeeccChhHHHHHHHHHHHh
Q 010649 263 FEPQIKKILSQI-RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSP-DLKANHAIRQHVDIVSESQKYNKLVKLLED 340 (505)
Q Consensus 263 ~~~~~~~il~~~-~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~ 340 (505)
|++++++|+..+ ++++|++++|||||.+++.++..|+.+|..+.+... ++.++.++.|.+..++...|...|..+|..
T Consensus 256 Fe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~ 335 (519)
T KOG0331|consen 256 FEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLED 335 (519)
T ss_pred cHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHH
Confidence 999999999999 777899999999999999999999999999999866 788999999999999999999999999999
Q ss_pred hc--CCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEE
Q 010649 341 IM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 418 (505)
Q Consensus 341 ~~--~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~ 418 (505)
.. ...|+||||+|++.|+.|++.|+..++++..|||++++.+|+.+++.|++|+.+|||||+++++|||||+|++|||
T Consensus 336 ~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn 415 (519)
T KOG0331|consen 336 ISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN 415 (519)
T ss_pred HhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEe
Confidence 86 4459999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHHhCCCCCHHHHHhhcCCCCCCC
Q 010649 419 YDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAMGRGAPPSSA 486 (505)
Q Consensus 419 ~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~~~~~~ 486 (505)
||+|.+.++|+||+||+||+|+.|.+++|++..+...+..+++.+++++|.+|+.|.++++...++++
T Consensus 416 ydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~~~~~~~ 483 (519)
T KOG0331|consen 416 YDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARVSGSGGN 483 (519)
T ss_pred CCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhhcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999887666553
No 2
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.2e-82 Score=660.03 Aligned_cols=438 Identities=66% Similarity=1.060 Sum_probs=411.0
Q ss_pred CCCCC-CCCCCCCCccccccccCccccCCCHHHHHHHHHhcCcee-ecCCCCCCCCCCcCCCCCHHHHHHHHHcCCCCCc
Q 010649 46 ESPRK-LDLDGLTPFEKNFYVESPSVAAMSEREVEEYRQQREITV-EGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPT 123 (505)
Q Consensus 46 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~ 123 (505)
.++.. |+...+++|+|+||.+++++..+++++++++++..++.+ .+.++|+|+.+|++++|++.+++.+.+++|.+|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt 154 (545)
T PTZ00110 75 RLQPIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPT 154 (545)
T ss_pred ccCCCCCccccccchhhhcccCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCC
Confidence 34444 998899999999999999999999999999999998886 7899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceE
Q 010649 124 PIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKS 203 (505)
Q Consensus 124 ~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~ 203 (505)
|+|.++||.+++|+|+|++||||||||++|++|++.++..++......+|.+|||+||+|||.|+.+++.+|+....+++
T Consensus 155 ~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~ 234 (545)
T PTZ00110 155 PIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRN 234 (545)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccE
Confidence 99999999999999999999999999999999999999877655556689999999999999999999999999889999
Q ss_pred EEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEe
Q 010649 204 TCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYW 283 (505)
Q Consensus 204 ~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~ 283 (505)
.+++|+.+...+...+..+++|+|+||++|.+++.....++.++++|||||||+|++++|.+++.+++..+++++|+++|
T Consensus 235 ~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~ 314 (545)
T PTZ00110 235 TVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMW 314 (545)
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEE
Confidence 99999999988888899999999999999999999888889999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHcc-CCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHH
Q 010649 284 SATWPKEVEHLARQYLY-NPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQIT 361 (505)
Q Consensus 284 SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~vlVF~~~~~~~~~l~ 361 (505)
|||||.+++.+++.++. ++..+.+..........+.+.+..+....|...|.+++.... ...++||||++++.|+.++
T Consensus 315 SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~ 394 (545)
T PTZ00110 315 SATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLT 394 (545)
T ss_pred EeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHH
Confidence 99999999999999886 577777776665666778888888888899999999998876 5679999999999999999
Q ss_pred HHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCc
Q 010649 362 RQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAK 441 (505)
Q Consensus 362 ~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~ 441 (505)
..|+..++++..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++||+||+|.++++|+||+||+||.|+.
T Consensus 395 ~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~ 474 (545)
T PTZ00110 395 KELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAK 474 (545)
T ss_pred HHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecCccHHHHHHHHHHHHHhCCCCCHHHHHhhcCCCC
Q 010649 442 GTAYTFFTAANARFAKELITILEEAGQKVSPELAAMGRGAPP 483 (505)
Q Consensus 442 g~~~~~~~~~~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~~~ 483 (505)
|.|++|+++++...+.+|+++|++++|+||++|.+|+.....
T Consensus 475 G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~~~~~~~ 516 (545)
T PTZ00110 475 GASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKLSNERSN 516 (545)
T ss_pred ceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999986654
No 3
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5e-81 Score=578.76 Aligned_cols=435 Identities=47% Similarity=0.795 Sum_probs=408.4
Q ss_pred CCCCCCccccccccCccccCCCHHHHHHHHHhcC-cee------ecCCCCCCCCCCcC-CCCCHHHHHHHHHcCCCCCcH
Q 010649 53 LDGLTPFEKNFYVESPSVAAMSEREVEEYRQQRE-ITV------EGRDVPKPVKSFRD-VGFPDYVMQEISKAGFFEPTP 124 (505)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~------~~~~~p~~~~~f~~-~~l~~~~~~~l~~~~~~~~~~ 124 (505)
+.++||..|+||.+.++++.+++.++++.++++. |.+ +..++|+|..+|++ +...+++++++++.||.+|+|
T Consensus 166 W~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtP 245 (629)
T KOG0336|consen 166 WAKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTP 245 (629)
T ss_pred cccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCc
Confidence 4568999999999999999999999999998853 333 23568999999997 477899999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCC-CCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceE
Q 010649 125 IQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL-APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKS 203 (505)
Q Consensus 125 ~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~-~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~ 203 (505)
+|.++||.+|+|.|++.+|.||+|||++||+|.+.|+..++.. ....+|.+|+++||++||.|+.-++.++. ..+.+.
T Consensus 246 IqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kys-yng~ks 324 (629)
T KOG0336|consen 246 IQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYS-YNGLKS 324 (629)
T ss_pred chhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhh-hcCcce
Confidence 9999999999999999999999999999999999999887653 34558899999999999999999998875 456889
Q ss_pred EEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEe
Q 010649 204 TCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYW 283 (505)
Q Consensus 204 ~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~ 283 (505)
+|++||.+...++.++.++.+|+|+||++|.++......++..++|||+||||+|+||+|++++++|+-.++|++|+++.
T Consensus 325 vc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmT 404 (629)
T KOG0336|consen 325 VCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMT 404 (629)
T ss_pred EEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHH
Q 010649 284 SATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQ 363 (505)
Q Consensus 284 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~ 363 (505)
|||||+.+.+++..|+.+|..+.+++.++.+...++|.+.+..+.+|+..+..+++......++||||..+..|+.|...
T Consensus 405 SATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd 484 (629)
T KOG0336|consen 405 SATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSD 484 (629)
T ss_pred cccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccch
Confidence 99999999999999999999999999999999999999988889999999888888888888999999999999999999
Q ss_pred HHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccE
Q 010649 364 LRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGT 443 (505)
Q Consensus 364 L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~ 443 (505)
|.-.|+....+||+.++.+|+..++.|++|+++|||||+++++|+|+|+++||+|||+|.+++.|+||+||+||+|+.|.
T Consensus 485 ~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~ 564 (629)
T KOG0336|consen 485 FCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGT 564 (629)
T ss_pred hhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCccHHHHHHHHHHHHHhCCCCCHHHHHhhcCCCCCCCCC
Q 010649 444 AYTFFTAANARFAKELITILEEAGQKVSPELAAMGRGAPPSSAGH 488 (505)
Q Consensus 444 ~~~~~~~~~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~~~~~~~~ 488 (505)
+++|++.+|...+.+|+++|+++.|+||++|..||+.++-....|
T Consensus 565 sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAeryk~~q~kR 609 (629)
T KOG0336|consen 565 SISFLTRNDWSMAEELIQILERAEQEVPDELVRMAERYKLKQSKR 609 (629)
T ss_pred eEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHhhhccc
Confidence 999999999999999999999999999999999999886654433
No 4
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-78 Score=572.44 Aligned_cols=427 Identities=48% Similarity=0.795 Sum_probs=411.8
Q ss_pred CCCCCCCccccccccCccccCCCHHHHHHHHHhcCceeecCCCCCCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHH
Q 010649 52 DLDGLTPFEKNFYVESPSVAAMSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWP 131 (505)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~ 131 (505)
.....++|+|+||.++.++..+...++..++....+.+.+..+|+|+.+|++++|++.++.++.+..|.+|||+|.+++|
T Consensus 176 s~i~y~p~~kdfy~e~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalp 255 (731)
T KOG0339|consen 176 SEIDYEPFNKDFYEEHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALP 255 (731)
T ss_pred hhccccccccccccChhhhhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccc
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCC
Q 010649 132 MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVP 211 (505)
Q Consensus 132 ~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~ 211 (505)
.++++++++-+|.||||||.+|+.|++.|+..++.+.++++|..||||||++||.|++.++++|++..+++++++|||.+
T Consensus 256 talsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgs 335 (731)
T KOG0339|consen 256 TALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGS 335 (731)
T ss_pred cccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHH
Q 010649 212 KGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEV 291 (505)
Q Consensus 212 ~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~ 291 (505)
..+|...+..++.||||||++|++++..+..++.++++|||||+++|.+++|+++++.|...+++++|+|+||||++..+
T Consensus 336 k~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kI 415 (731)
T KOG0339|consen 336 KWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKI 415 (731)
T ss_pred HHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCcEEEEcCCCcccccceeeeeeccC-hhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCC
Q 010649 292 EHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS-ESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWP 370 (505)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~ 370 (505)
+.+++.++.+|+.+..+... ..+..+.|.+.++. +..|+..|+..|.+....+++|||+.-+..++.++..|+..++.
T Consensus 416 e~lard~L~dpVrvVqg~vg-ean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~ 494 (731)
T KOG0339|consen 416 EKLARDILSDPVRVVQGEVG-EANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFN 494 (731)
T ss_pred HHHHHHHhcCCeeEEEeehh-ccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccce
Confidence 99999999999999887655 67788899888775 56788899998888888889999999999999999999999999
Q ss_pred eEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecC
Q 010649 371 ALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTA 450 (505)
Q Consensus 371 ~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~ 450 (505)
+..+||+|.+.+|.+++..|+.+..+|||+|+++++|+|||++..||+||.-.+++.|.|||||+||+|..|.+|+++++
T Consensus 495 v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTe 574 (731)
T KOG0339|consen 495 VSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTE 574 (731)
T ss_pred eeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEech
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhCCCCCHHHHHhhc
Q 010649 451 ANARFAKELITILEEAGQKVSPELAAMGR 479 (505)
Q Consensus 451 ~~~~~~~~l~~~l~~~~~~i~~~l~~~~~ 479 (505)
.|.+++-.|++.|+.++|.||..|.+|+-
T Consensus 575 KDa~fAG~LVnnLe~agQnVP~~l~dlam 603 (731)
T KOG0339|consen 575 KDAEFAGHLVNNLEGAGQNVPDELMDLAM 603 (731)
T ss_pred hhHHHhhHHHHHHhhccccCChHHHHHHh
Confidence 99999999999999999999999999984
No 5
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=4.3e-74 Score=548.22 Aligned_cols=410 Identities=45% Similarity=0.756 Sum_probs=384.3
Q ss_pred ccccCCCHHHHHHHHHhcCceeecCCCCCCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCC
Q 010649 68 PSVAAMSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGS 147 (505)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGs 147 (505)
.....+++.++..|+....|.++|..+|.|+.+|++.+||.++++.+.+.||..|+|+|.+++|..++.+|+|..|.|||
T Consensus 214 k~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgs 293 (673)
T KOG0333|consen 214 KVLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGS 293 (673)
T ss_pred hhHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccC
Confidence 44667788888889888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhcCCCC----CCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCC
Q 010649 148 GKTLAYLLPAIVHVNAQPFL----APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGV 223 (505)
Q Consensus 148 GKT~~~~~~~l~~l~~~~~~----~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~ 223 (505)
|||++|++|++..+...|.. ....+|.++|++|||+||+|+.++-.+|++..+++++.+.||.+..++-..+..+|
T Consensus 294 Gktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gc 373 (673)
T KOG0333|consen 294 GKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGC 373 (673)
T ss_pred CccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccc
Confidence 99999999999999887643 34569999999999999999999999999999999999999999999988899999
Q ss_pred cEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCC-------------------------CC
Q 010649 224 EIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRP-------------------------DR 278 (505)
Q Consensus 224 ~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~-------------------------~~ 278 (505)
+|+|+||++|++.|++..+-+.++.+||+|||++|.|++|++++.++|.+++. -+
T Consensus 374 eiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yr 453 (673)
T KOG0333|consen 374 EIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYR 453 (673)
T ss_pred eeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhccccccee
Confidence 99999999999999999999999999999999999999999999999998852 16
Q ss_pred ceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHH
Q 010649 279 QTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCD 358 (505)
Q Consensus 279 ~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~ 358 (505)
|+++||||+|+.++.+++.|+.+|..+.++... .....+.|.+..+.+..|...|..+|.+.. ..++|||+|+++.|+
T Consensus 454 qT~mftatm~p~verlar~ylr~pv~vtig~~g-k~~~rveQ~v~m~~ed~k~kkL~eil~~~~-~ppiIIFvN~kk~~d 531 (673)
T KOG0333|consen 454 QTVMFTATMPPAVERLARSYLRRPVVVTIGSAG-KPTPRVEQKVEMVSEDEKRKKLIEILESNF-DPPIIIFVNTKKGAD 531 (673)
T ss_pred EEEEEecCCChHHHHHHHHHhhCCeEEEeccCC-CCccchheEEEEecchHHHHHHHHHHHhCC-CCCEEEEEechhhHH
Confidence 999999999999999999999999999999876 667789999999999999999999998863 458999999999999
Q ss_pred HHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccC
Q 010649 359 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA 438 (505)
Q Consensus 359 ~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~ 438 (505)
.|++.|.+.++.+..+||+.++++|+.+++.|++|..+|||||+++++|||||+|.+|||||+++++++|.|||||+||+
T Consensus 532 ~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRA 611 (673)
T KOG0333|consen 532 ALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRA 611 (673)
T ss_pred HHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEecCccHHHHHHHHHHHH-HhCCCCCHHHHHhhc
Q 010649 439 GAKGTAYTFFTAANARFAKELITILE-EAGQKVSPELAAMGR 479 (505)
Q Consensus 439 g~~g~~~~~~~~~~~~~~~~l~~~l~-~~~~~i~~~l~~~~~ 479 (505)
|+.|++++|+++.|...+.+|...|. .....+|++|..-..
T Consensus 612 Gk~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela~h~~ 653 (673)
T KOG0333|consen 612 GKSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELANHPD 653 (673)
T ss_pred ccCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhccChh
Confidence 99999999999999999999999887 557788888866544
No 6
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3e-71 Score=573.46 Aligned_cols=426 Identities=36% Similarity=0.614 Sum_probs=389.6
Q ss_pred CCCCCCCccccccccCccccC-CCHHHHHHHHHhcCceeecCCCCCCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHH
Q 010649 52 DLDGLTPFEKNFYVESPSVAA-MSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGW 130 (505)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i 130 (505)
..+.+++++++||..++.... ++.++++.+++..+|.+.|.+.|.|+.+|+++++++.+++.+...||..|||+|.++|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~ai 152 (518)
T PLN00206 73 KPKRLPATDECFYVRDPGSTSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAI 152 (518)
T ss_pred chhhcCCcCCcCCccCcchhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHH
Confidence 456678899999998887755 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCC--CCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEEC
Q 010649 131 PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPF--LAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYG 208 (505)
Q Consensus 131 ~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~--~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~g 208 (505)
|.+++|+|++++||||||||++|++|++.++..... .....++++|||+||++||.|+.+.++.+....++++..++|
T Consensus 153 p~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~g 232 (518)
T PLN00206 153 PAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVG 232 (518)
T ss_pred HHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEEC
Confidence 999999999999999999999999999998864321 112357899999999999999999999998888899999999
Q ss_pred CCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCCCh
Q 010649 209 GVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWP 288 (505)
Q Consensus 209 g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~ 288 (505)
|.....+...+..+++|+|+||++|.+++......++++++|||||||+|++++|..++..++..+ +.+|++++|||++
T Consensus 233 G~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l-~~~q~l~~SATl~ 311 (518)
T PLN00206 233 GDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQAL-SQPQVLLFSATVS 311 (518)
T ss_pred CcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhC-CCCcEEEEEeeCC
Confidence 999888888888899999999999999999888889999999999999999999999999999888 5789999999999
Q ss_pred HHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhhcC-CCeEEEEeCCcccHHHHHHHHHh-
Q 010649 289 KEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLRM- 366 (505)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~-~~~vlVF~~~~~~~~~l~~~L~~- 366 (505)
+.++.++..++.++..+.+.... .....+.+.+..+....+...+.+++..... ..++||||+++..|+.+++.|..
T Consensus 312 ~~v~~l~~~~~~~~~~i~~~~~~-~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~ 390 (518)
T PLN00206 312 PEVEKFASSLAKDIILISIGNPN-RPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVV 390 (518)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCC-CCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhc
Confidence 99999999999998888776654 4455677777778888888888888876433 35899999999999999999975
Q ss_pred CCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEE
Q 010649 367 DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYT 446 (505)
Q Consensus 367 ~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~ 446 (505)
.++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++||+||+|.++.+|+||+||+||.|..|.+++
T Consensus 391 ~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~ 470 (518)
T PLN00206 391 TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIV 470 (518)
T ss_pred cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCccHHHHHHHHHHHHHhCCCCCHHHHHhhc
Q 010649 447 FFTAANARFAKELITILEEAGQKVSPELAAMGR 479 (505)
Q Consensus 447 ~~~~~~~~~~~~l~~~l~~~~~~i~~~l~~~~~ 479 (505)
|++.++...+.++.+.|+..++.+|++|.++..
T Consensus 471 f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~~~ 503 (518)
T PLN00206 471 FVNEEDRNLFPELVALLKSSGAAIPRELANSRY 503 (518)
T ss_pred EEchhHHHHHHHHHHHHHHcCCCCCHHHHhChh
Confidence 999999999999999999999999999998873
No 7
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=7.4e-74 Score=527.66 Aligned_cols=416 Identities=42% Similarity=0.700 Sum_probs=389.2
Q ss_pred ccccCccccCCCHHHHHHHHHhcCceeecCCCCCCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEE
Q 010649 63 FYVESPSVAAMSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGI 142 (505)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~ 142 (505)
.|.+.--+..+|+++.+..+++-.|.++|+++|+|+.+|.++.||..+++.+++.|+.+|||+|.+.+|.+++|+|+|.+
T Consensus 134 ~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGI 213 (610)
T KOG0341|consen 134 AWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGI 213 (610)
T ss_pred ccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeE
Confidence 44555567888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchHHHHHHHHHHHHhcCCC---CCCCCCCEEEEEcccHHHHHHHHHHHHHhcC------CCCceEEEEECCCCch
Q 010649 143 AETGSGKTLAYLLPAIVHVNAQPF---LAPGDGPIVLVLAPTRELAVQIQQESTKFGA------SSKIKSTCIYGGVPKG 213 (505)
Q Consensus 143 a~TGsGKT~~~~~~~l~~l~~~~~---~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~------~~~i~~~~~~gg~~~~ 213 (505)
|-||||||++|.+|++...+.+.. ...+++|..||+||+||||.|+++.+..|.. ...++...+.||.+..
T Consensus 214 AfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~ 293 (610)
T KOG0341|consen 214 AFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVR 293 (610)
T ss_pred EeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHH
Confidence 999999999999999988776542 3467799999999999999999998887743 3447888999999999
Q ss_pred HHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHH
Q 010649 214 PQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEH 293 (505)
Q Consensus 214 ~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~ 293 (505)
++...+.++.+|+|+||++|.++|.++..+|.-+.|+.+||||+|.|++|+..++.++..++..+|+++||||+|..++.
T Consensus 294 eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~ 373 (610)
T KOG0341|consen 294 EQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQN 373 (610)
T ss_pred HHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEE
Q 010649 294 LARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALS 373 (505)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~ 373 (505)
+++..+..|+.+++++.. .++-++.|.+.++..+.|+..|++.|+...+ ++||||..+..++.+.++|--.|..++.
T Consensus 374 FAkSALVKPvtvNVGRAG-AAsldViQevEyVkqEaKiVylLeCLQKT~P--pVLIFaEkK~DVD~IhEYLLlKGVEava 450 (610)
T KOG0341|consen 374 FAKSALVKPVTVNVGRAG-AASLDVIQEVEYVKQEAKIVYLLECLQKTSP--PVLIFAEKKADVDDIHEYLLLKGVEAVA 450 (610)
T ss_pred HHHhhcccceEEeccccc-ccchhHHHHHHHHHhhhhhhhHHHHhccCCC--ceEEEeccccChHHHHHHHHHccceeEE
Confidence 999999999999999887 6677788889999999999999999987544 8999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCc-c
Q 010649 374 IHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA-N 452 (505)
Q Consensus 374 lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~ 452 (505)
|||+.++++|...++.|+.|+.+|||||++++.|+|+|++.+|||||+|..++.|+|||||+||.|++|.+.+|++.+ +
T Consensus 451 IHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~ 530 (610)
T KOG0341|consen 451 IHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQE 530 (610)
T ss_pred eecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccch
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999987 6
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHhhcCC
Q 010649 453 ARFAKELITILEEAGQKVSPELAAMGRGA 481 (505)
Q Consensus 453 ~~~~~~l~~~l~~~~~~i~~~l~~~~~~~ 481 (505)
...+-+|..+|.+++|++|+.|..++-..
T Consensus 531 esvLlDLK~LL~EakQ~vP~~L~~L~~~~ 559 (610)
T KOG0341|consen 531 ESVLLDLKHLLQEAKQEVPPVLAELAGPM 559 (610)
T ss_pred HHHHHHHHHHHHHhhccCCHHHHHhCCCc
Confidence 67889999999999999999999998543
No 8
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-72 Score=541.51 Aligned_cols=408 Identities=43% Similarity=0.714 Sum_probs=377.0
Q ss_pred HHHHHHHhcCce--eecCCCCCCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHH
Q 010649 77 EVEEYRQQREIT--VEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 77 ~~~~~~~~~~i~--~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~ 154 (505)
....|.+++.+. +.+.++|.++..|.+..+++.+..+++..++..|+|+|+.+||.+..|++++++|+||||||.+|+
T Consensus 50 ~~~nfd~~~~i~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFL 129 (482)
T KOG0335|consen 50 TGINFDKYNDIPVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFL 129 (482)
T ss_pred hhhccCCccceeeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHH
Confidence 444566666655 468899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCC-----CCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeC
Q 010649 155 LPAIVHVNAQPFLAP-----GDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIAT 229 (505)
Q Consensus 155 ~~~l~~l~~~~~~~~-----~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T 229 (505)
+|++.++........ ...|.+||++||||||.|+++++++|.....++++.+||+.+...+...+.++|+|+|||
T Consensus 130 iPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaT 209 (482)
T KOG0335|consen 130 IPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVAT 209 (482)
T ss_pred HHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEec
Confidence 999999987644221 125999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHccCCccCCccEEEEcCcchhhc-CCCHHHHHHHHHhcCC----CCceEEecCCChHHHHHHHHHHccC-Cc
Q 010649 230 PGRLIDMLESHNTNLRRVTYLVLDEADRMLD-MGFEPQIKKILSQIRP----DRQTLYWSATWPKEVEHLARQYLYN-PY 303 (505)
Q Consensus 230 ~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~-~~~~~~~~~il~~~~~----~~~~v~~SAT~~~~~~~~~~~~~~~-~~ 303 (505)
|++|.++++.+.+.|.++.++||||||+|+| ++|.+++++|+.+... .+|.+|||||+|.+++.++..++.+ ++
T Consensus 210 pGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi 289 (482)
T KOG0335|consen 210 PGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYI 289 (482)
T ss_pred CchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccce
Confidence 9999999999999999999999999999999 9999999999998853 7899999999999999999999997 77
Q ss_pred EEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhhc---CCC-----eEEEEeCCcccHHHHHHHHHhCCCCeEEEc
Q 010649 304 KVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM---DGS-----RILIFMDTKKGCDQITRQLRMDGWPALSIH 375 (505)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~---~~~-----~vlVF~~~~~~~~~l~~~L~~~~~~~~~lh 375 (505)
.+.+.... ....++.|.+..+.+..|...|+++|.... ... +++|||++++.|+.++..|...++++..+|
T Consensus 290 ~laV~rvg-~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIh 368 (482)
T KOG0335|consen 290 FLAVGRVG-STSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIH 368 (482)
T ss_pred EEEEeeec-cccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeec
Confidence 77776665 678889999999999999999999998654 233 899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHH
Q 010649 376 GDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARF 455 (505)
Q Consensus 376 g~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 455 (505)
|+.++.+|.+.++.|++|+++|||||+++++|+|||+|++||+||+|.+..+|+|||||+||+|+.|.++.|++..+...
T Consensus 369 g~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i 448 (482)
T KOG0335|consen 369 GDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNI 448 (482)
T ss_pred chhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHhhcCCCCCC
Q 010649 456 AKELITILEEAGQKVSPELAAMGRGAPPSS 485 (505)
Q Consensus 456 ~~~l~~~l~~~~~~i~~~l~~~~~~~~~~~ 485 (505)
.+.|.++|.+++|++|+||.+|+.+...+|
T Consensus 449 ~~~L~~~l~ea~q~vP~wl~~~~~~~~~~~ 478 (482)
T KOG0335|consen 449 AKALVEILTEANQEVPQWLSELSRERELGG 478 (482)
T ss_pred HHHHHHHHHHhcccCcHHHHhhhhhccccC
Confidence 999999999999999999999777654443
No 9
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-71 Score=512.96 Aligned_cols=367 Identities=39% Similarity=0.598 Sum_probs=347.4
Q ss_pred CCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEE
Q 010649 96 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIV 175 (505)
Q Consensus 96 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~v 175 (505)
+...+|.++++.+.++++++..++..|+++|+++||.++.|+|+|+.|+||||||.+|++|++++++.++ ..+.+
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p-----~~~~~ 132 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP-----KLFFA 132 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC-----CCceE
Confidence 3467899999999999999999999999999999999999999999999999999999999999999865 35889
Q ss_pred EEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHH-ccCCccCCccEEEEcC
Q 010649 176 LVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLE-SHNTNLRRVTYLVLDE 254 (505)
Q Consensus 176 lil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~-~~~~~l~~~~~lVlDE 254 (505)
|||+||||||.|+.+.+..++...+++++++.||.....+...+.+.++|+|+||++|.++++ .+.+++..++++|+||
T Consensus 133 lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 133 LVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDE 212 (476)
T ss_pred EEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhch
Confidence 999999999999999999999999999999999999999999999999999999999999998 5778899999999999
Q ss_pred cchhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHH
Q 010649 255 ADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKL 334 (505)
Q Consensus 255 ah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 334 (505)
||+++++.|.+.+..|+..++..+|++++|||++..+.++....+.+|..+...... ..-..+.|.+..++...|...|
T Consensus 213 ADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky-~tv~~lkQ~ylfv~~k~K~~yL 291 (476)
T KOG0330|consen 213 ADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKY-QTVDHLKQTYLFVPGKDKDTYL 291 (476)
T ss_pred HHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchh-cchHHhhhheEeccccccchhH
Confidence 999999999999999999999999999999999999999999999999988776654 5667788999999999999999
Q ss_pred HHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCC
Q 010649 335 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVK 414 (505)
Q Consensus 335 ~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~ 414 (505)
+.+|++... ..+||||++...++.++-.|+..|+.+..+||.|++..|.-.++.|++|...||||||+++||+|+|.|+
T Consensus 292 V~ll~e~~g-~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd 370 (476)
T KOG0330|consen 292 VYLLNELAG-NSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVD 370 (476)
T ss_pred HHHHHhhcC-CcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCce
Confidence 999997644 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHHhCCC
Q 010649 415 YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQK 469 (505)
Q Consensus 415 ~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 469 (505)
+|||||.|.+..+|+||+||++|+|++|.++.+++.-|.+.+..|...+.....+
T Consensus 371 ~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 371 VVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred EEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999888888888777655
No 10
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-71 Score=572.57 Aligned_cols=430 Identities=47% Similarity=0.796 Sum_probs=411.8
Q ss_pred CCCCCCCCccccccccCccccCCCHHHHHHHHHhcC-ceeecCCCCCCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHH
Q 010649 51 LDLDGLTPFEKNFYVESPSVAAMSEREVEEYRQQRE-ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQG 129 (505)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~ 129 (505)
......++|.++||.+.+++..++..++..|+...+ |.+.+...|.|+.+|.+.++...++..+++.+|..|+|+|.+|
T Consensus 316 ~S~~~~epFRknfy~e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qA 395 (997)
T KOG0334|consen 316 HSKISYEPFRKNFYIEVRDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQA 395 (997)
T ss_pred cccccchhhhhcccccchhHHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhh
Confidence 345567999999999999999999999999999977 9999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECC
Q 010649 130 WPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGG 209 (505)
Q Consensus 130 i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg 209 (505)
||+++.|+++|.+|.||||||++|++|++.|+..++....++||.+||++||++|+.|+.+++++|....+++++++||+
T Consensus 396 iP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg 475 (997)
T KOG0334|consen 396 IPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGG 475 (997)
T ss_pred cchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHhcCCcEEEeChHHHHHHHHcc---CCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCC
Q 010649 210 VPKGPQVRDLQKGVEIVIATPGRLIDMLESH---NTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (505)
Q Consensus 210 ~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~---~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT 286 (505)
.....++.++.+++.|+||||+++++++-.. ..++.++.++|+||||+|.+++|.+++..|+..+++++|++++|||
T Consensus 476 ~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSat 555 (997)
T KOG0334|consen 476 SGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSAT 555 (997)
T ss_pred ccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhh
Confidence 9999999999999999999999999988643 4567888899999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccC-hhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHH
Q 010649 287 WPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS-ESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLR 365 (505)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~ 365 (505)
+|..+..++...+..|+.++++... .....+.|.+.++. +..|+..|.++|.+.....++||||.....|+.+.+.|.
T Consensus 556 fpr~m~~la~~vl~~Pveiiv~~~s-vV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~ 634 (997)
T KOG0334|consen 556 FPRSMEALARKVLKKPVEIIVGGRS-VVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQ 634 (997)
T ss_pred hhHHHHHHHHHhhcCCeeEEEccce-eEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHH
Confidence 9999999999999999998887554 77888999999988 999999999999999888999999999999999999999
Q ss_pred hCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEE
Q 010649 366 MDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAY 445 (505)
Q Consensus 366 ~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~ 445 (505)
+.++.+..+||+.++.+|..++++|+++.+.+||||+++++|+|++.+.+|||||+|...++|+||.||+||+|++|.|+
T Consensus 635 ~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~Av 714 (997)
T KOG0334|consen 635 KAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAV 714 (997)
T ss_pred hcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCccHHHHHHHHHHHHHhCCCCCHHHHHhhcCC
Q 010649 446 TFFTAANARFAKELITILEEAGQKVSPELAAMGRGA 481 (505)
Q Consensus 446 ~~~~~~~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~ 481 (505)
+|+++++..++.+|++.+...++.+|..|..|...+
T Consensus 715 tFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l~~~f 750 (997)
T KOG0334|consen 715 TFITPDQLKYAGDLCKALELSKQPVPKLLQALSERF 750 (997)
T ss_pred EEeChHHhhhHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 999999999999999999999999999999998754
No 11
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-67 Score=540.67 Aligned_cols=373 Identities=44% Similarity=0.704 Sum_probs=341.8
Q ss_pred CCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010649 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (505)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil 178 (505)
..|+++++++.+++++.+.||..|+|+|.++||.++.|+|+++.|+||||||++|++|+++++.... .....+ +||+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~--~~~~~~-aLil 105 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV--ERKYVS-ALIL 105 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc--ccCCCc-eEEE
Confidence 7799999999999999999999999999999999999999999999999999999999999977431 111112 9999
Q ss_pred cccHHHHHHHHHHHHHhcCCC-CceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcch
Q 010649 179 APTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (505)
Q Consensus 179 ~Pt~~La~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~ 257 (505)
+||||||.|+++.+..+.... ++++.+++||.+...+...+..+++|+|+||++|++++....++++.+.++|+||||+
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADr 185 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADR 185 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhh
Confidence 999999999999999999988 7999999999999999999998999999999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCc-ccccceeeeeeccChhH-HHHHHH
Q 010649 258 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDL-KANHAIRQHVDIVSESQ-KYNKLV 335 (505)
Q Consensus 258 ~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-k~~~l~ 335 (505)
|++++|.+.+..|+..+++++|+++||||+|..+..+++.++.+|..+.+..... .....+.|.+..+.... |...|.
T Consensus 186 mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~ 265 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLL 265 (513)
T ss_pred hhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888774432 36778889998888766 999999
Q ss_pred HHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCE
Q 010649 336 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKY 415 (505)
Q Consensus 336 ~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~ 415 (505)
.++..... .++||||+++..|+.|+..|...|+.+..|||++++++|..+++.|++|+.+||||||+++||||||++++
T Consensus 266 ~ll~~~~~-~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~ 344 (513)
T COG0513 266 KLLKDEDE-GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSH 344 (513)
T ss_pred HHHhcCCC-CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccce
Confidence 99987544 37999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhcccccCCCccEEEEEecCc-cHHHHHHHHHHHHHh---CCCCCHHHH
Q 010649 416 VINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA-NARFAKELITILEEA---GQKVSPELA 475 (505)
Q Consensus 416 Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~---~~~i~~~l~ 475 (505)
|||||+|.++++|+||+||+||+|..|.+++|+++. +...+..+.+.+... ...+|....
T Consensus 345 VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~~~~ 408 (513)
T COG0513 345 VINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDEP 408 (513)
T ss_pred eEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCcchh
Confidence 999999999999999999999999999999999986 888888888887655 345555433
No 12
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-67 Score=464.77 Aligned_cols=378 Identities=34% Similarity=0.600 Sum_probs=350.9
Q ss_pred CCCCCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCC
Q 010649 93 DVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDG 172 (505)
Q Consensus 93 ~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~ 172 (505)
.--+++.+|+++++.+.+++.+...||.+|..+|+.|++.+++|+|++++|..|+|||.+|.+.+++.+.-. ...
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~-----~r~ 95 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS-----VRE 95 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc-----cce
Confidence 345678899999999999999999999999999999999999999999999999999999988877765542 124
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEE
Q 010649 173 PIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL 252 (505)
Q Consensus 173 ~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVl 252 (505)
..+|||+||||||.|+.+.+..++...++.+..+.||.+..+.++.+..+++++.+||+++.+++....+.-+.++++|+
T Consensus 96 tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVL 175 (400)
T KOG0328|consen 96 TQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVL 175 (400)
T ss_pred eeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEe
Confidence 67999999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred cCcchhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhH-HH
Q 010649 253 DEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQ-KY 331 (505)
Q Consensus 253 DEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~ 331 (505)
||||.|++.+|..++-.+.+.++++.|++++|||+|.++.+..+.|+.+|+.+.+.+.++ ..+.++|++..+..++ |.
T Consensus 176 DEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdel-tlEgIKqf~v~ve~EewKf 254 (400)
T KOG0328|consen 176 DEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDEL-TLEGIKQFFVAVEKEEWKF 254 (400)
T ss_pred ccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCC-chhhhhhheeeechhhhhH
Confidence 999999999999999999999999999999999999999999999999999999988874 4555777766665554 99
Q ss_pred HHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCC
Q 010649 332 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK 411 (505)
Q Consensus 332 ~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~ 411 (505)
..|.++...+.- .+.+|||+|++.++.|.+.+++.++.+.++||+|++++|++++++|++|+.+||++|++.++|+|+|
T Consensus 255 dtLcdLYd~LtI-tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~ 333 (400)
T KOG0328|consen 255 DTLCDLYDTLTI-TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQ 333 (400)
T ss_pred hHHHHHhhhheh-heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcc
Confidence 999998876543 4799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHHhCCCCCHHHHHh
Q 010649 412 DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAM 477 (505)
Q Consensus 412 ~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~i~~~l~~~ 477 (505)
.|++|||||+|.+.+.|+||+||.||.|++|.++-|+..+|.+.+.++.+.+.-+..++|..+.++
T Consensus 334 qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad~ 399 (400)
T KOG0328|consen 334 QVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVADL 399 (400)
T ss_pred eeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhhc
Confidence 999999999999999999999999999999999999999999999999999999999998776654
No 13
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2e-65 Score=524.07 Aligned_cols=365 Identities=38% Similarity=0.683 Sum_probs=330.0
Q ss_pred CCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCC-CCCCCEEEEE
Q 010649 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA-PGDGPIVLVL 178 (505)
Q Consensus 100 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~-~~~~~~vlil 178 (505)
+|+++++++.+++.+.+.+|.+|||+|.++|+.+++++|++++||||||||++|++|+++.+....... ....+++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 689999999999999999999999999999999999999999999999999999999999987643221 1234689999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchh
Q 010649 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 258 (505)
Q Consensus 179 ~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~ 258 (505)
+||++||.|+.+.+..+....++++..++|+.+...+...+...++|+|+||++|.+++......++++++|||||||++
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 99999999999999999988889999999999988888888888999999999999999888888999999999999999
Q ss_pred hcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHH
Q 010649 259 LDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLL 338 (505)
Q Consensus 259 ~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 338 (505)
++++|...++.++..++...|++++|||++.++..++..++.++..+.+.... .....+.+.+..++...+...+..++
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~l~ 240 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN-TASEQVTQHVHFVDKKRKRELLSQMI 240 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc-ccccceeEEEEEcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877665443 34456677777777777777777666
Q ss_pred HhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEE
Q 010649 339 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 418 (505)
Q Consensus 339 ~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~ 418 (505)
... ...++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++++||+
T Consensus 241 ~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~ 319 (456)
T PRK10590 241 GKG-NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN 319 (456)
T ss_pred HcC-CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE
Confidence 543 3468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHHh
Q 010649 419 YDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 466 (505)
Q Consensus 419 ~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 466 (505)
|++|.++.+|+||+||+||.|..|.+++|++.++...++.+.+.+...
T Consensus 320 ~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 320 YELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367 (456)
T ss_pred eCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999988888887776543
No 14
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-65 Score=488.49 Aligned_cols=362 Identities=36% Similarity=0.549 Sum_probs=333.6
Q ss_pred CCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010649 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (505)
Q Consensus 98 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vli 177 (505)
..+|.+++|+..+++++...||..|||+|..+||.++-|+|++.||.||||||.+|++|+|..++..|.. -...+|||
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~--~~~TRVLV 257 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK--VAATRVLV 257 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc--CcceeEEE
Confidence 4589999999999999999999999999999999999999999999999999999999999999987633 33678999
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHc-cCCccCCccEEEEcCcc
Q 010649 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDEAD 256 (505)
Q Consensus 178 l~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~-~~~~l~~~~~lVlDEah 256 (505)
|+|||||+.|++...+++...+.|.++.+.||-+...|...++..+||+|+||++|++++.+ ..+++.++.++|+||||
T Consensus 258 L~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD 337 (691)
T KOG0338|consen 258 LVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD 337 (691)
T ss_pred EeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH
Confidence 99999999999999999999999999999999999999999999999999999999999976 46789999999999999
Q ss_pred hhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeecc---ChhHHHHH
Q 010649 257 RMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIV---SESQKYNK 333 (505)
Q Consensus 257 ~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~k~~~ 333 (505)
+|++.+|..++..|+..++.++|+++||||+...+.+++..-+..|+.+.+.... .....+.|.+..+ .+..+...
T Consensus 338 RMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~-~~a~~LtQEFiRIR~~re~dRea~ 416 (691)
T KOG0338|consen 338 RMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNK-DTAPKLTQEFIRIRPKREGDREAM 416 (691)
T ss_pred HHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCcc-ccchhhhHHHheeccccccccHHH
Confidence 9999999999999999999999999999999999999999999999999988776 4445555555433 23456666
Q ss_pred HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCC
Q 010649 334 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV 413 (505)
Q Consensus 334 l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~ 413 (505)
+..++.... ..+++||+.|++.|+.+.-.|--.|+.+.-+||.++|.+|-..++.|++.+++|||||+++++|+||+.|
T Consensus 417 l~~l~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV 495 (691)
T KOG0338|consen 417 LASLITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGV 495 (691)
T ss_pred HHHHHHHhc-ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccce
Confidence 777777665 4589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHH
Q 010649 414 KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITIL 463 (505)
Q Consensus 414 ~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l 463 (505)
.+||||++|.+...|+||+||+.|+|+.|.+++|+.+++.++++.+++.-
T Consensus 496 ~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 496 QTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred eEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999998888764
No 15
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.1e-63 Score=517.77 Aligned_cols=365 Identities=39% Similarity=0.635 Sum_probs=328.4
Q ss_pred CCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCC--CCCCCEEE
Q 010649 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA--PGDGPIVL 176 (505)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~--~~~~~~vl 176 (505)
.+|+++++++.+++.|.+.||..|+|+|.++||.+++++|++++||||||||++|++|+++++...+... ....+++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 4699999999999999999999999999999999999999999999999999999999999987543211 22357899
Q ss_pred EEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHcc-CCccCCccEEEEcCc
Q 010649 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLDEA 255 (505)
Q Consensus 177 il~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~-~~~l~~~~~lVlDEa 255 (505)
||+||++||.|+++.+.+|+...++++..++|+.....+...+..+++|+|+||++|.+++.+. ...+..+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 9999999999999999999998999999999999988888888888999999999999998764 467889999999999
Q ss_pred chhhcCCCHHHHHHHHHhcCC--CCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHH
Q 010649 256 DRMLDMGFEPQIKKILSQIRP--DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNK 333 (505)
Q Consensus 256 h~~~~~~~~~~~~~il~~~~~--~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 333 (505)
|++++++|...+..++..++. ..|+++||||++..+..++..++.++..+.+.... .....+.+.+.......|...
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~k~~~ 247 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET-ITAARVRQRIYFPADEEKQTL 247 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc-ccccceeEEEEecCHHHHHHH
Confidence 999999999999999998875 78999999999999999999999988877665544 344556777777788888888
Q ss_pred HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCC
Q 010649 334 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV 413 (505)
Q Consensus 334 l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~ 413 (505)
+..++... ...++||||+++..|+.+++.|.+.++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++
T Consensus 248 L~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V 326 (572)
T PRK04537 248 LLGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGV 326 (572)
T ss_pred HHHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCC
Confidence 88887653 45689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHH
Q 010649 414 KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEE 465 (505)
Q Consensus 414 ~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 465 (505)
++||+||+|.+.++|+||+||+||.|..|.|++|+++.+...+.++.+.+..
T Consensus 327 ~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~ 378 (572)
T PRK04537 327 KYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQ 378 (572)
T ss_pred CEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999888777777766543
No 16
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.4e-63 Score=505.49 Aligned_cols=367 Identities=38% Similarity=0.582 Sum_probs=330.2
Q ss_pred CCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCC--CCCCCEE
Q 010649 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA--PGDGPIV 175 (505)
Q Consensus 98 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~--~~~~~~v 175 (505)
-.+|+++++++.+++++...||..|+|+|.++||.+++|+|++++||||||||++|++|++..+...+... ...++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 36899999999999999999999999999999999999999999999999999999999999987654321 1246889
Q ss_pred EEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCc
Q 010649 176 LVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEA 255 (505)
Q Consensus 176 lil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEa 255 (505)
|||+||++||.|+.+.+..+....++++..++||.....+...+..+++|+|+||++|.+++......+.++++||||||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEa 166 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA 166 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecH
Confidence 99999999999999999999988899999999999888888888888999999999999999988888999999999999
Q ss_pred chhhcCCCHHHHHHHHHhcCC--CCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHH
Q 010649 256 DRMLDMGFEPQIKKILSQIRP--DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNK 333 (505)
Q Consensus 256 h~~~~~~~~~~~~~il~~~~~--~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 333 (505)
|++++.+|...+..++..++. .++.+++|||++..+..++..++.+|..+.+.... .....+.+.+.......|...
T Consensus 167 d~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~-~~~~~i~~~~~~~~~~~k~~~ 245 (423)
T PRK04837 167 DRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRL 245 (423)
T ss_pred HHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCC-cCCCceeEEEEeCCHHHHHHH
Confidence 999999999999999998874 56789999999999999999999998887765543 334556666666777888888
Q ss_pred HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCC
Q 010649 334 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV 413 (505)
Q Consensus 334 l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~ 413 (505)
+..++... ...++||||+++..|+.++..|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++
T Consensus 246 l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v 324 (423)
T PRK04837 246 LQTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAV 324 (423)
T ss_pred HHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCcccc
Confidence 88888764 34689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHHh
Q 010649 414 KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 466 (505)
Q Consensus 414 ~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 466 (505)
++||+||+|.++++|+||+||+||.|+.|.+++|+++.+...+..+.+.+...
T Consensus 325 ~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~ 377 (423)
T PRK04837 325 THVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHS 377 (423)
T ss_pred CEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999998888877776655443
No 17
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=6.6e-64 Score=476.48 Aligned_cols=364 Identities=35% Similarity=0.563 Sum_probs=333.2
Q ss_pred CCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 010649 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (505)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vl 176 (505)
....|++..+++..+++++.+||..+|++|+..++.++.|+|+++.|.||+|||++|++|+++.+...+.... .+..+|
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r-~~~~vl 158 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR-NGTGVL 158 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC-CCeeEE
Confidence 3456788899999999999999999999999999999999999999999999999999999999988765444 577899
Q ss_pred EEcccHHHHHHHHHHHHHhcCCC-CceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCC-ccCCccEEEEcC
Q 010649 177 VLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDE 254 (505)
Q Consensus 177 il~Pt~~La~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~-~l~~~~~lVlDE 254 (505)
|||||||||.|++.+++++.... .+.+..+.||.........+.++++|+|+||++|.+++++... ..+.++++|+||
T Consensus 159 Ii~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDE 238 (543)
T KOG0342|consen 159 IICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDE 238 (543)
T ss_pred EecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeec
Confidence 99999999999999999988777 8999999999999999999999999999999999999998544 446678999999
Q ss_pred cchhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccC-CcEEEEcCC-CcccccceeeeeeccChhHHHH
Q 010649 255 ADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYN-PYKVIIGSP-DLKANHAIRQHVDIVSESQKYN 332 (505)
Q Consensus 255 ah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~ 332 (505)
||++++++|...++.|+..++..+|+++||||.+.+++++++..+.. +..+..... +......+.|-+.+++...++.
T Consensus 239 ADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ 318 (543)
T KOG0342|consen 239 ADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFS 318 (543)
T ss_pred chhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHH
Confidence 99999999999999999999999999999999999999999987766 555554433 2344566788888888888899
Q ss_pred HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCC
Q 010649 333 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD 412 (505)
Q Consensus 333 ~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~ 412 (505)
.+..+|++.....++||||+|...+..++..|+...++|..|||.++|..|..+..+|++.+.-||||||+++||+|+|+
T Consensus 319 ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~ 398 (543)
T KOG0342|consen 319 LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPD 398 (543)
T ss_pred HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCC
Confidence 99999999877789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHH
Q 010649 413 VKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIT 461 (505)
Q Consensus 413 ~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 461 (505)
|++||+||+|.++++|+||+||++|.|..|.+++++.+.+..++..|.+
T Consensus 399 V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~ 447 (543)
T KOG0342|consen 399 VDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKK 447 (543)
T ss_pred ceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999888777664
No 18
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=5.6e-62 Score=500.77 Aligned_cols=359 Identities=39% Similarity=0.620 Sum_probs=329.1
Q ss_pred CCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010649 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (505)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil 178 (505)
.+|+++++++.+++++.+.||.+|+|+|+++|+.+++++|++++||||||||++|++|++.++.... ..+++|||
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~-----~~~~~lil 78 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR-----FRVQALVL 78 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc-----CCceEEEE
Confidence 5799999999999999999999999999999999999999999999999999999999999886421 25679999
Q ss_pred cccHHHHHHHHHHHHHhcCCC-CceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcch
Q 010649 179 APTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (505)
Q Consensus 179 ~Pt~~La~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~ 257 (505)
+||++||.|+.++++.+.... ++++..++|+.+...+...+..+++|+|+||++|.+++.+....+.++++||+||||+
T Consensus 79 ~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~ 158 (460)
T PRK11776 79 CPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADR 158 (460)
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHH
Confidence 999999999999999987643 6889999999999989888889999999999999999998888899999999999999
Q ss_pred hhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHH
Q 010649 258 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL 337 (505)
Q Consensus 258 ~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 337 (505)
|++++|...+..++..+++.+|++++|||+|+.+..++..++.+|..+.+.... ....+.+.+..+....|...+..+
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~k~~~l~~l 236 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH--DLPAIEQRFYEVSPDERLPALQRL 236 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC--CCCCeeEEEEEeCcHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888776543 334477777778888899999888
Q ss_pred HHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEE
Q 010649 338 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI 417 (505)
Q Consensus 338 l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi 417 (505)
+.... ..++||||++++.++.+++.|...++.+..+||++++.+|+.+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 237 l~~~~-~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI 315 (460)
T PRK11776 237 LLHHQ-PESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVI 315 (460)
T ss_pred HHhcC-CCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEE
Confidence 87643 45899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHH
Q 010649 418 NYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEE 465 (505)
Q Consensus 418 ~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 465 (505)
+||+|.++.+|+||+||+||.|+.|.+++|+++.+...+..+.+.+..
T Consensus 316 ~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 316 NYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred EecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999988777777666543
No 19
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-63 Score=453.10 Aligned_cols=364 Identities=35% Similarity=0.521 Sum_probs=333.2
Q ss_pred CCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010649 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (505)
Q Consensus 98 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vli 177 (505)
..+|+.+++++|+.+.+++.++.+|||+|..+||.++.|+|+|.+|.||||||++|.+|+++.+.+.+ .+..+||
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP-----~giFalv 80 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP-----YGIFALV 80 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC-----CcceEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999998865 4778999
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHcc----CCccCCccEEEEc
Q 010649 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH----NTNLRRVTYLVLD 253 (505)
Q Consensus 178 l~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~----~~~l~~~~~lVlD 253 (505)
++||||||.|+.++|...++..++++.+++||+..-.+...+.+.++++|+||+++.+++.+. .+.++++.++|+|
T Consensus 81 lTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlD 160 (442)
T KOG0340|consen 81 LTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLD 160 (442)
T ss_pred ecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEec
Confidence 999999999999999999999999999999999998888999999999999999999998875 3457889999999
Q ss_pred CcchhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEc-CCCcccccceeeeeeccChhHHHH
Q 010649 254 EADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIG-SPDLKANHAIRQHVDIVSESQKYN 332 (505)
Q Consensus 254 Eah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~k~~ 332 (505)
|||++++..|...++.+.+.+++.+|.++||||+.+.+.++.......++.+... .+.......+.|.+..++...|..
T Consensus 161 EADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkda 240 (442)
T KOG0340|consen 161 EADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDA 240 (442)
T ss_pred chhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHH
Confidence 9999999999999999999999999999999999998888776655554333332 245567778889999999999999
Q ss_pred HHHHHHHhhcC--CCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCC
Q 010649 333 KLVKLLEDIMD--GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDV 410 (505)
Q Consensus 333 ~l~~~l~~~~~--~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi 410 (505)
+++.+|..... ...++||+++..+|+.|+..|+...+.+..+|+.|++.+|...+.+|+++..+||||||++++|+||
T Consensus 241 YLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDI 320 (442)
T KOG0340|consen 241 YLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDI 320 (442)
T ss_pred HHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCC
Confidence 99999987655 5689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHHh
Q 010649 411 KDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 466 (505)
Q Consensus 411 ~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 466 (505)
|.|++|||+|.|.++.+|+||+||+.|+|+.|.++.|+++.|.+.+..+.+....+
T Consensus 321 P~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkK 376 (442)
T KOG0340|consen 321 PTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKK 376 (442)
T ss_pred CceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999988877776655444
No 20
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.1e-61 Score=507.29 Aligned_cols=357 Identities=39% Similarity=0.642 Sum_probs=324.2
Q ss_pred CCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010649 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (505)
Q Consensus 98 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vli 177 (505)
..+|+++++++.+++++.+.||.+|+|+|.++|+.+++++++|++||||+|||++|++|++..+... ...+++||
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~-----~~~~~~LI 79 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-----LKAPQILV 79 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-----cCCCeEEE
Confidence 3569999999999999999999999999999999999999999999999999999999999887542 23678999
Q ss_pred EcccHHHHHHHHHHHHHhcCCC-CceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcc
Q 010649 178 LAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256 (505)
Q Consensus 178 l~Pt~~La~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah 256 (505)
|+||++||.|+++.+..+.... ++.++.++||.+...+...+..+++|+|+||++|.+++......++++.+|||||||
T Consensus 80 L~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH
Confidence 9999999999999999987653 689999999998888888888899999999999999999888889999999999999
Q ss_pred hhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHH
Q 010649 257 RMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVK 336 (505)
Q Consensus 257 ~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 336 (505)
.|++++|...+..++..++...|+++||||+|..+..+++.++.+|..+.+.... .....+.+.+..+....|...|..
T Consensus 160 ~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~-~~~~~i~q~~~~v~~~~k~~~L~~ 238 (629)
T PRK11634 160 EMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSV-TTRPDISQSYWTVWGMRKNEALVR 238 (629)
T ss_pred HHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCcc-ccCCceEEEEEEechhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888776554 344556777777777788888888
Q ss_pred HHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEE
Q 010649 337 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYV 416 (505)
Q Consensus 337 ~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~V 416 (505)
+|... ...++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++|
T Consensus 239 ~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~V 317 (629)
T PRK11634 239 FLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 (629)
T ss_pred HHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEE
Confidence 88754 34589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHH
Q 010649 417 INYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIT 461 (505)
Q Consensus 417 i~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 461 (505)
|+||+|.++++|+||+||+||.|+.|.+++|+++.+...++.+.+
T Consensus 318 I~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~ 362 (629)
T PRK11634 318 VNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 (629)
T ss_pred EEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHH
Confidence 999999999999999999999999999999999876655554433
No 21
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-62 Score=469.46 Aligned_cols=356 Identities=33% Similarity=0.542 Sum_probs=329.4
Q ss_pred CCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEE
Q 010649 96 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIV 175 (505)
Q Consensus 96 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~v 175 (505)
..+..|++++++...++.|+..+|..+|.+|.++||.+|+|+|+|..|.||||||++|++|++.++....+. ..+|--+
T Consensus 66 ~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs-~~DGlGa 144 (758)
T KOG0343|consen 66 TTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWS-PTDGLGA 144 (758)
T ss_pred hhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCC-CCCCcee
Confidence 345789999999999999999999999999999999999999999999999999999999999999876543 3457779
Q ss_pred EEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHc-cCCccCCccEEEEcC
Q 010649 176 LVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDE 254 (505)
Q Consensus 176 lil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~-~~~~l~~~~~lVlDE 254 (505)
|||+||||||.|+++.+.+.+....+....+.||.........+. .++|+||||++|+.++.. ..++.+++.+||+||
T Consensus 145 lIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDE 223 (758)
T KOG0343|consen 145 LIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDE 223 (758)
T ss_pred EEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEEecc
Confidence 999999999999999999999999999999999998766655544 589999999999998876 456778899999999
Q ss_pred cchhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCC-cccccceeeeeeccChhHHHHH
Q 010649 255 ADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPD-LKANHAIRQHVDIVSESQKYNK 333 (505)
Q Consensus 255 ah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~ 333 (505)
||+|++|+|...+..|++.+++.+|+++||||....+.++++..+.+|..+.+.... ...+..+.|.+.+++...|+..
T Consensus 224 ADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~ 303 (758)
T KOG0343|consen 224 ADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDM 303 (758)
T ss_pred HHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHH
Confidence 999999999999999999999999999999999999999999999999999988544 5677889999999999999999
Q ss_pred HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHh--CCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCC
Q 010649 334 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM--DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK 411 (505)
Q Consensus 334 l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~--~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~ 411 (505)
|..+|..+.. .+.|||++|.+++..++..+++ .|+++..+||.|++..|..++..|...+.-||+||++++||+|+|
T Consensus 304 L~sFI~shlk-~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFp 382 (758)
T KOG0343|consen 304 LWSFIKSHLK-KKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFP 382 (758)
T ss_pred HHHHHHhccc-cceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCc
Confidence 9999998765 5899999999999999999986 589999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHH
Q 010649 412 DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANAR 454 (505)
Q Consensus 412 ~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~ 454 (505)
.|++||.+|+|.+.++|+||+||+.|.+..|.+++++++.+.+
T Consensus 383 aVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE 425 (758)
T KOG0343|consen 383 AVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEE 425 (758)
T ss_pred ccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHH
Confidence 9999999999999999999999999999999999999999843
No 22
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-61 Score=456.75 Aligned_cols=356 Identities=34% Similarity=0.549 Sum_probs=317.5
Q ss_pred CCCcCCCC--CHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 010649 99 KSFRDVGF--PDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (505)
Q Consensus 99 ~~f~~~~l--~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vl 176 (505)
.+|++++. ++++++++...||...||+|..+||.++.++|+++.|+||||||++|++|++..+..+....+.....+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 35777655 4999999999999999999999999999999999999999999999999999999554322222234689
Q ss_pred EEcccHHHHHHHHHHHHHhcCC-CCceEEEEECCCCchHHHHHHh-cCCcEEEeChHHHHHHHHccC--CccCCccEEEE
Q 010649 177 VLAPTRELAVQIQQESTKFGAS-SKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHN--TNLRRVTYLVL 252 (505)
Q Consensus 177 il~Pt~~La~Q~~~~~~~~~~~-~~i~~~~~~gg~~~~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~~--~~l~~~~~lVl 252 (505)
||+||||||.|+.+.+..|... .++.+.+++||.+....+..+. .++.|+|+||++|.+++.... ++++.+.+||+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999999988766 6788999999999888877764 568899999999999998754 44559999999
Q ss_pred cCcchhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCc-ccccceeeeeeccChhHHH
Q 010649 253 DEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDL-KANHAIRQHVDIVSESQKY 331 (505)
Q Consensus 253 DEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~ 331 (505)
||||++++++|...+..|++.+++.+++-+||||...++.++++..+.+|..+.+..... ..+..+...+..++...|.
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~ 243 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKL 243 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHH
Confidence 999999999999999999999999999999999999999999999999999998877653 2455677788889999999
Q ss_pred HHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCC
Q 010649 332 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLD 409 (505)
Q Consensus 332 ~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gid 409 (505)
..++++|... ..+++|||.+|...++.....|... ..++..+||.|.+..|..++..|++..-.||+|||++++|||
T Consensus 244 ~~lv~~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlD 322 (567)
T KOG0345|consen 244 SQLVHLLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLD 322 (567)
T ss_pred HHHHHHHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCC
Confidence 9999999884 4579999999999999998888764 678999999999999999999999988889999999999999
Q ss_pred CCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHH
Q 010649 410 VKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARF 455 (505)
Q Consensus 410 i~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 455 (505)
||++++||+||+|.++..|+||+||++|+|+.|.+++|+.+.+..+
T Consensus 323 ip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aY 368 (567)
T KOG0345|consen 323 IPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAY 368 (567)
T ss_pred CCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHH
Confidence 9999999999999999999999999999999999999999965443
No 23
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.7e-60 Score=485.43 Aligned_cols=363 Identities=36% Similarity=0.591 Sum_probs=324.8
Q ss_pred CCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 010649 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (505)
Q Consensus 100 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~ 179 (505)
+|+++++++.+++.+.+.||.+|+++|.++|+.++.++|++++||||+|||++|++|+++++...+.. ....+++|||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~-~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR-KSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc-CCCCceEEEEC
Confidence 68999999999999999999999999999999999999999999999999999999999998764322 22357899999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhh
Q 010649 180 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (505)
Q Consensus 180 Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~ 259 (505)
||++||.|+.+.+..+....++.+..++|+.....+...+...++|+|+||++|.+++....+.+.++++|||||||+|+
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRML 160 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHh
Confidence 99999999999999999888999999999999888887788889999999999999999888889999999999999999
Q ss_pred cCCCHHHHHHHHHhcCCCCceEEecCCChH-HHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccC-hhHHHHHHHHH
Q 010649 260 DMGFEPQIKKILSQIRPDRQTLYWSATWPK-EVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS-ESQKYNKLVKL 337 (505)
Q Consensus 260 ~~~~~~~~~~il~~~~~~~~~v~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~ 337 (505)
+++|...+..+...++...|+++||||++. .+..+...++.++..+...... .....+.+.+.... ...|...+..+
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~~k~~~l~~l 239 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSR-RERKKIHQWYYRADDLEHKTALLCHL 239 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCc-ccccCceEEEEEeCCHHHHHHHHHHH
Confidence 999999999999999889999999999974 5888888888888877665443 33444555555554 45677777777
Q ss_pred HHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEE
Q 010649 338 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI 417 (505)
Q Consensus 338 l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi 417 (505)
+... ...++||||++++.|+.++..|+..++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||
T Consensus 240 ~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI 318 (434)
T PRK11192 240 LKQP-EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVI 318 (434)
T ss_pred HhcC-CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEE
Confidence 6542 346899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHH
Q 010649 418 NYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEE 465 (505)
Q Consensus 418 ~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 465 (505)
+||+|.+...|+||+||+||+|..|.+++|++..|...+..+.+++.+
T Consensus 319 ~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~ 366 (434)
T PRK11192 319 NFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEE 366 (434)
T ss_pred EECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998888888876654
No 24
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-63 Score=446.59 Aligned_cols=368 Identities=30% Similarity=0.529 Sum_probs=344.6
Q ss_pred CCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010649 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (505)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil 178 (505)
..|+++.+..+++..+...||..|.|+|+++||.++.|+|+++.|..|+|||.+|.+|++..+... ...-.++|+
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~-----~~~IQ~~il 159 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK-----KNVIQAIIL 159 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc-----ccceeEEEE
Confidence 558899999999999999999999999999999999999999999999999999999999987653 235679999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchh
Q 010649 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 258 (505)
Q Consensus 179 ~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~ 258 (505)
+||||||.|+.+.+.++++..++++...+||.+....+-.+....+++|+||++++++..++...++++.++|+||||.+
T Consensus 160 VPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKl 239 (459)
T KOG0326|consen 160 VPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKL 239 (459)
T ss_pred eecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhh
Confidence 99999999999999999999999999999999999999889999999999999999999999889999999999999999
Q ss_pred hcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHH
Q 010649 259 LDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLL 338 (505)
Q Consensus 259 ~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 338 (505)
++..|.+.++.++..+++++|++++|||+|-.+..+...++.+|+.+.+... .....+.|++..+.+..|..-|-.++
T Consensus 240 Ls~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e--Ltl~GvtQyYafV~e~qKvhCLntLf 317 (459)
T KOG0326|consen 240 LSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE--LTLKGVTQYYAFVEERQKVHCLNTLF 317 (459)
T ss_pred hchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh--hhhcchhhheeeechhhhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999887653 45677899999999999999888888
Q ss_pred HhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEE
Q 010649 339 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 418 (505)
Q Consensus 339 ~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~ 418 (505)
..+.- .+.|||||+...++.|++.+.+.|+.|..+|+.|.++.|..++.+|++|.++.||||+.+.+|||++++++|||
T Consensus 318 skLqI-NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN 396 (459)
T KOG0326|consen 318 SKLQI-NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN 396 (459)
T ss_pred HHhcc-cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe
Confidence 77644 47899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHHhCCCCCHHH
Q 010649 419 YDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPEL 474 (505)
Q Consensus 419 ~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~i~~~l 474 (505)
||.|.++++|+||+||.||.|.-|.|+.+++.+|...+..+.+-|......+|+.+
T Consensus 397 FDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~i 452 (459)
T KOG0326|consen 397 FDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNI 452 (459)
T ss_pred cCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcC
Confidence 99999999999999999999999999999999998888888887777777777544
No 25
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5e-59 Score=480.10 Aligned_cols=379 Identities=37% Similarity=0.558 Sum_probs=332.4
Q ss_pred CCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCC--CCCCC
Q 010649 96 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA--PGDGP 173 (505)
Q Consensus 96 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~--~~~~~ 173 (505)
.....|.++++++.+++.|.+.||..|+++|.++|+.+++|+|+|+++|||||||++|++|++..+...+... ....+
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 3356788999999999999999999999999999999999999999999999999999999999987653211 11257
Q ss_pred EEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHh-cCCcEEEeChHHHHHHHHccCCccCCccEEEE
Q 010649 174 IVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVL 252 (505)
Q Consensus 174 ~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVl 252 (505)
++|||+||++||.|+.+.+..+....++.+..++|+.....+...+. ..++|+|+||++|.+++......++++++|||
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 89999999999999999999998888899999999988777776664 45899999999999998888888999999999
Q ss_pred cCcchhhcCCCHHHHHHHHHhcCC--CCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHH
Q 010649 253 DEADRMLDMGFEPQIKKILSQIRP--DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQK 330 (505)
Q Consensus 253 DEah~~~~~~~~~~~~~il~~~~~--~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 330 (505)
||||++++++|...+..++..++. ..|++++|||++.++..+++.++.++..+.+.... .....+.+.+..+....+
T Consensus 244 DEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~k 322 (475)
T PRK01297 244 DEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPEN-VASDTVEQHVYAVAGSDK 322 (475)
T ss_pred chHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCc-CCCCcccEEEEEecchhH
Confidence 999999999999999999988853 67999999999999999999999998877665543 334455666777777788
Q ss_pred HHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCC
Q 010649 331 YNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDV 410 (505)
Q Consensus 331 ~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi 410 (505)
...+..++... ...++||||++++.++.++..|...++.+..+||++++++|.++++.|++|+++|||||+++++|||+
T Consensus 323 ~~~l~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi 401 (475)
T PRK01297 323 YKLLYNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHI 401 (475)
T ss_pred HHHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcc
Confidence 88888877653 34589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHHhC-CC-CCHHHHH
Q 010649 411 KDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAG-QK-VSPELAA 476 (505)
Q Consensus 411 ~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~-~~-i~~~l~~ 476 (505)
|++++||++++|.|..+|+||+||+||.|++|.+++|++++|..++..+.+++.... -+ .|.+|..
T Consensus 402 ~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T PRK01297 402 DGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCEMPPAELLK 469 (475)
T ss_pred cCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCcccCCcHHHhh
Confidence 999999999999999999999999999999999999999998888888877775543 23 4445544
No 26
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.1e-60 Score=450.87 Aligned_cols=364 Identities=35% Similarity=0.555 Sum_probs=319.2
Q ss_pred CCCCcCCCCCHHHHHHHH-HcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCC-CCCCCCCCEE
Q 010649 98 VKSFRDVGFPDYVMQEIS-KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQP-FLAPGDGPIV 175 (505)
Q Consensus 98 ~~~f~~~~l~~~~~~~l~-~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~-~~~~~~~~~v 175 (505)
-..|..+++++.+.+.|+ .+++..||.+|.++||.+++|+|++|.++||||||++|++|+++.+.... .....+|+.+
T Consensus 135 s~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~A 214 (708)
T KOG0348|consen 135 SAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYA 214 (708)
T ss_pred cccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceE
Confidence 356889999999999997 57999999999999999999999999999999999999999999998764 3456679999
Q ss_pred EEEcccHHHHHHHHHHHHHhcCCC-CceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHc-cCCccCCccEEEEc
Q 010649 176 LVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLD 253 (505)
Q Consensus 176 lil~Pt~~La~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~-~~~~l~~~~~lVlD 253 (505)
||++||||||.|+++.+.++.+.. .|..+.+.||..+..+...++++++|+|+||++|++++.+ ..+.++++.|||||
T Consensus 215 LVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlD 294 (708)
T KOG0348|consen 215 LVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLD 294 (708)
T ss_pred EEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEec
Confidence 999999999999999999987654 4666788999999999999999999999999999999987 45678899999999
Q ss_pred CcchhhcCCCHHHHHHHHHhcC-------------CCCceEEecCCChHHHHHHHHHHccCCcEEEEcCC----------
Q 010649 254 EADRMLDMGFEPQIKKILSQIR-------------PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSP---------- 310 (505)
Q Consensus 254 Eah~~~~~~~~~~~~~il~~~~-------------~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------- 310 (505)
|+|++++.||+..+..|++.+. +..|.+++|||+.+.+.+++..-+.||..+.....
T Consensus 295 EaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a 374 (708)
T KOG0348|consen 295 EADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKA 374 (708)
T ss_pred chhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhh
Confidence 9999999999999999988772 23688999999999999999999999988772111
Q ss_pred --------------CcccccceeeeeeccChhHHHHHHHHHHHhhc---CCCeEEEEeCCcccHHHHHHHHHhC------
Q 010649 311 --------------DLKANHAIRQHVDIVSESQKYNKLVKLLEDIM---DGSRILIFMDTKKGCDQITRQLRMD------ 367 (505)
Q Consensus 311 --------------~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~---~~~~vlVF~~~~~~~~~l~~~L~~~------ 367 (505)
....+..+.|.+.+++...++..|..+|.+.. +..++|||+++.+.++.-+..|.+.
T Consensus 375 ~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e 454 (708)
T KOG0348|consen 375 VQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLE 454 (708)
T ss_pred hhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccc
Confidence 12345567788888888888888888877643 3458999999999999888887541
Q ss_pred ----------------CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHh
Q 010649 368 ----------------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHR 431 (505)
Q Consensus 368 ----------------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr 431 (505)
+.++..+||+|++++|..+++.|...+..||+|||+++||+|+|+|++||.||+|.+.++|+||
T Consensus 455 ~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHR 534 (708)
T KOG0348|consen 455 GSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHR 534 (708)
T ss_pred cccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHH
Confidence 2456789999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCccEEEEEecCccHHHHHHHHH
Q 010649 432 IGRTGRAGAKGTAYTFFTAANARFAKELIT 461 (505)
Q Consensus 432 ~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 461 (505)
+||+.|+|..|.+++|+.+.+.+++..|..
T Consensus 535 vGRTARaG~kG~alLfL~P~Eaey~~~l~~ 564 (708)
T KOG0348|consen 535 VGRTARAGEKGEALLFLLPSEAEYVNYLKK 564 (708)
T ss_pred hhhhhhccCCCceEEEecccHHHHHHHHHh
Confidence 999999999999999999999887666554
No 27
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-59 Score=437.04 Aligned_cols=368 Identities=31% Similarity=0.491 Sum_probs=336.4
Q ss_pred CCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCC-CCCCCCEEEE
Q 010649 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL-APGDGPIVLV 177 (505)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~-~~~~~~~vli 177 (505)
.+|+++++++.+++++.+.|+..||-+|+.+||.+++|+|+++.|.||||||.+|++|+++.+...... ....++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 679999999999999999999999999999999999999999999999999999999999999886554 3455899999
Q ss_pred EcccHHHHHHHHHHHHHhcCCC--CceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccC-CccCCccEEEEcC
Q 010649 178 LAPTRELAVQIQQESTKFGASS--KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN-TNLRRVTYLVLDE 254 (505)
Q Consensus 178 l~Pt~~La~Q~~~~~~~~~~~~--~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~-~~l~~~~~lVlDE 254 (505)
|+||+|||.|++..+.++...+ .+++.-+...++.......+...++|+|+||++++.++..+. ..+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 9999999999999988875443 356666666666666666777889999999999999998876 6788899999999
Q ss_pred cchhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHH
Q 010649 255 ADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKL 334 (505)
Q Consensus 255 ah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 334 (505)
||.++..||+..+.++.+.+++..|.++||||+.+++..+.+.++.+|+.+.+...++.....+.|+...+.+.+|...+
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflll 258 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLL 258 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred HHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc-----------
Q 010649 335 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV----------- 403 (505)
Q Consensus 335 ~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~----------- 403 (505)
..+++-..-.+++|||+|+++.|..|.-.|++.|++.++++|.|+...|..++++|+.|-++++||||.
T Consensus 259 yallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~ 338 (569)
T KOG0346|consen 259 YALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEV 338 (569)
T ss_pred HHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccc
Confidence 999987666789999999999999999999999999999999999999999999999999999999991
Q ss_pred ------------------------ccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHH
Q 010649 404 ------------------------AARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKEL 459 (505)
Q Consensus 404 ------------------------~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l 459 (505)
++||||+.+|.+|+|||+|.+...|+||+||++|.+++|.++.|+.+.+......|
T Consensus 339 kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~l 418 (569)
T KOG0346|consen 339 KGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESL 418 (569)
T ss_pred cccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHH
Confidence 26899999999999999999999999999999999999999999999988766677
Q ss_pred HHHHHHh
Q 010649 460 ITILEEA 466 (505)
Q Consensus 460 ~~~l~~~ 466 (505)
..+++..
T Consensus 419 e~~~~d~ 425 (569)
T KOG0346|consen 419 ESILKDE 425 (569)
T ss_pred HHHHhhH
Confidence 7666653
No 28
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.2e-57 Score=462.66 Aligned_cols=368 Identities=33% Similarity=0.592 Sum_probs=323.1
Q ss_pred CCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 010649 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (505)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vl 176 (505)
...+|+++++++.+.+++.+.+|..|+|+|.++|+.++++++++++||||||||++|++|++..+... ..++++|
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-----~~~~~~l 100 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD-----LNACQAL 100 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC-----CCCceEE
Confidence 46789999999999999999999999999999999999999999999999999999999999887532 2367899
Q ss_pred EEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcc
Q 010649 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256 (505)
Q Consensus 177 il~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah 256 (505)
||+|+++|+.|+.+.+..++....+.+..++|+.....+...+..+++|+|+||++|.+++......+.++++||+||||
T Consensus 101 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah 180 (401)
T PTZ00424 101 ILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEAD 180 (401)
T ss_pred EECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHH
Confidence 99999999999999999998887888888899988877777788889999999999999998878889999999999999
Q ss_pred hhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccCh-hHHHHHHH
Q 010649 257 RMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE-SQKYNKLV 335 (505)
Q Consensus 257 ~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~ 335 (505)
++.+.+|...+..++..++++.|++++|||+|+.+..+...++.++..+.+..... ....+.+.+..... ..+...+.
T Consensus 181 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 259 (401)
T PTZ00424 181 EMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDEL-TLEGIRQFYVAVEKEEWKFDTLC 259 (401)
T ss_pred HHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCc-ccCCceEEEEecChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888776555432 23334444444433 44556666
Q ss_pred HHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCE
Q 010649 336 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKY 415 (505)
Q Consensus 336 ~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~ 415 (505)
.++... ...++||||+++++++.++..|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++
T Consensus 260 ~~~~~~-~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~ 338 (401)
T PTZ00424 260 DLYETL-TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSL 338 (401)
T ss_pred HHHHhc-CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCE
Confidence 665543 3468999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHHhCCCCC
Q 010649 416 VINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVS 471 (505)
Q Consensus 416 Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~i~ 471 (505)
||++++|.+..+|+||+||+||.|+.|.|++|+++++...+..+.+.+.....+.+
T Consensus 339 VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~ 394 (401)
T PTZ00424 339 VINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMP 394 (401)
T ss_pred EEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccC
Confidence 99999999999999999999999999999999999988888877766655444444
No 29
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-56 Score=409.08 Aligned_cols=373 Identities=29% Similarity=0.474 Sum_probs=322.3
Q ss_pred CCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCC
Q 010649 96 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGP 173 (505)
Q Consensus 96 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~--~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~ 173 (505)
-.+.+|+++.|.+++++.+..++|..|+.+|+.++|.++.. +++|.++..|+|||.+|.+.++.++... ...|
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~-----~~~P 161 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD-----VVVP 161 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc-----ccCC
Confidence 35788999999999999999999999999999999999975 7899999999999999999999887653 2368
Q ss_pred EEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHc-cCCccCCccEEEE
Q 010649 174 IVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVL 252 (505)
Q Consensus 174 ~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~-~~~~l~~~~~lVl 252 (505)
.+++|+|||+||.|+.+.+.+.++..++......-+... ..-.. -..+|+|.||+.+.+++.. +...+..+.++|+
T Consensus 162 Q~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~-~rG~~--i~eqIviGTPGtv~Dlm~klk~id~~kikvfVl 238 (477)
T KOG0332|consen 162 QCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKA-KRGNK--LTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVL 238 (477)
T ss_pred CceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCccc-ccCCc--chhheeeCCCccHHHHHHHHHhhChhhceEEEe
Confidence 899999999999999999999999887777766655411 00011 1248999999999999887 7778899999999
Q ss_pred cCcchhhc-CCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHH
Q 010649 253 DEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKY 331 (505)
Q Consensus 253 DEah~~~~-~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 331 (505)
||||.|++ .||..+-..|...++++.|++++|||+...+..++...+.++..+.+.+.++........++.+..+.+|+
T Consensus 239 DEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~ 318 (477)
T KOG0332|consen 239 DEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKY 318 (477)
T ss_pred cchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHH
Confidence 99999987 46888999999999999999999999999999999999999999999998866655555556666788999
Q ss_pred HHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCC
Q 010649 332 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK 411 (505)
Q Consensus 332 ~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~ 411 (505)
+.|.++.... .-+..||||.|++.|.+|+..|...|+.+..+||+|..++|..++++|+.|..+|||+|++++||||++
T Consensus 319 ~~l~~lyg~~-tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~ 397 (477)
T KOG0332|consen 319 QALVNLYGLL-TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVA 397 (477)
T ss_pred HHHHHHHhhh-hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccc
Confidence 9999965443 345799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCC------ChhHHHHhhcccccCCCccEEEEEecCc-cHHHHHHHHHHHHHh-CCCCCHHHHHh
Q 010649 412 DVKYVINYDFPG------SLEDYVHRIGRTGRAGAKGTAYTFFTAA-NARFAKELITILEEA-GQKVSPELAAM 477 (505)
Q Consensus 412 ~~~~Vi~~~~p~------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~-~~~i~~~l~~~ 477 (505)
.|++|||||+|. ++++|+||+||+||.|+.|.++.++... ..+.+..|.++.... ....|..+.++
T Consensus 398 qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E~ 471 (477)
T KOG0332|consen 398 QVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLDEL 471 (477)
T ss_pred eEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHHHH
Confidence 999999999995 7899999999999999999999988876 456777777777433 44455555554
No 30
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-56 Score=436.06 Aligned_cols=397 Identities=34% Similarity=0.511 Sum_probs=350.1
Q ss_pred HHhcCceeecCCCCCCCCCCcC----CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHH
Q 010649 82 RQQREITVEGRDVPKPVKSFRD----VGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA 157 (505)
Q Consensus 82 ~~~~~i~~~~~~~p~~~~~f~~----~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~ 157 (505)
++...+.+.|.++|.|+.+|.+ +.++..+++++...+|..|+|+|.+++|.+++++++++|||||+|||++|.+|+
T Consensus 115 Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pi 194 (593)
T KOG0344|consen 115 RKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPI 194 (593)
T ss_pred hhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHH
Confidence 3445778899999999999998 468999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc--CCCCceEEEEECCCCchH-HHHHHhcCCcEEEeChHHHH
Q 010649 158 IVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG--ASSKIKSTCIYGGVPKGP-QVRDLQKGVEIVIATPGRLI 234 (505)
Q Consensus 158 l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~--~~~~i~~~~~~gg~~~~~-~~~~~~~~~~Iiv~T~~~l~ 234 (505)
+.++..........+-+++|+.|+++||.|++.++.++. ....++...+........ ........++|+|.||-++.
T Consensus 195 l~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~ 274 (593)
T KOG0344|consen 195 LQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIV 274 (593)
T ss_pred HHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHH
Confidence 999987654444567889999999999999999999998 555555544443322222 12222345799999999999
Q ss_pred HHHHccC--CccCCccEEEEcCcchhhcC-CCHHHHHHHHHhcC-CCCceEEecCCChHHHHHHHHHHccCCcEEEEcCC
Q 010649 235 DMLESHN--TNLRRVTYLVLDEADRMLDM-GFEPQIKKILSQIR-PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSP 310 (505)
Q Consensus 235 ~~l~~~~--~~l~~~~~lVlDEah~~~~~-~~~~~~~~il~~~~-~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 310 (505)
..+.... ..++.+.++|+||+|++.+. .|..++..|++.+. ++..+-+||||.+..+++++...+.++..+.++..
T Consensus 275 ~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~ 354 (593)
T KOG0344|consen 275 GLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLR 354 (593)
T ss_pred HHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecc
Confidence 9888765 67899999999999999998 89999999988875 67888899999999999999999999999999888
Q ss_pred CcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHH-HhCCCCeEEEcCCCCHHHHHHHHHH
Q 010649 311 DLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL-RMDGWPALSIHGDKSQAERDWVLSE 389 (505)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L-~~~~~~~~~lhg~~~~~~r~~~~~~ 389 (505)
+.......+..+.+..+..|+..+.+++....+ .++|||+.+++.|..|...| ...++.+.++||..++.+|++++++
T Consensus 355 ~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~-PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~ 433 (593)
T KOG0344|consen 355 NSANETVDQELVFCGSEKGKLLALRQLVASGFK-PPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMER 433 (593)
T ss_pred hhHhhhhhhhheeeecchhHHHHHHHHHhccCC-CCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHH
Confidence 744333344445667888999999999988654 48999999999999999999 7789999999999999999999999
Q ss_pred HhcCCCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHHhCCC
Q 010649 390 FKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQK 469 (505)
Q Consensus 390 f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 469 (505)
|+.|+++|||||+++++|+|+.++++|||||.|.+...|+||+||+||+|+.|.|++||+..+....+.+.+.++..+-+
T Consensus 434 FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~e 513 (593)
T KOG0344|consen 434 FRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGCE 513 (593)
T ss_pred HhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhhc
Q 010649 470 VSPELAAMGR 479 (505)
Q Consensus 470 i~~~l~~~~~ 479 (505)
+|++++.|..
T Consensus 514 vpe~~m~~~k 523 (593)
T KOG0344|consen 514 VPEKIMGIKK 523 (593)
T ss_pred chHHHHhhhh
Confidence 9999999885
No 31
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-56 Score=430.83 Aligned_cols=370 Identities=34% Similarity=0.486 Sum_probs=301.7
Q ss_pred CCCCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CcEEEEccCCCchHHHHHHHHHHHHhcCCCC-----
Q 010649 94 VPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFL----- 167 (505)
Q Consensus 94 ~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~-~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~----- 167 (505)
.+..+..|.++.+|..++.+|..+||..|+++|.-.||.+..+ .|++..|.||||||++|-+|+++.+......
T Consensus 176 ~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~ 255 (731)
T KOG0347|consen 176 SKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELS 255 (731)
T ss_pred cccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhh
Confidence 3456778999999999999999999999999999999999998 7999999999999999999999955432211
Q ss_pred ---CCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCC--
Q 010649 168 ---APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-- 242 (505)
Q Consensus 168 ---~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~-- 242 (505)
.....+..||++||||||.|+.+-+......+++++..++||.....|.+.+...++|+|+||++|..++.....
T Consensus 256 ~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 256 NTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred hHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhh
Confidence 111234499999999999999999999999999999999999999999999999999999999999999987655
Q ss_pred -ccCCccEEEEcCcchhhcCCCHHHHHHHHHhcC-----CCCceEEecCCChHHH---------------------HHHH
Q 010649 243 -NLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR-----PDRQTLYWSATWPKEV---------------------EHLA 295 (505)
Q Consensus 243 -~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~-----~~~~~v~~SAT~~~~~---------------------~~~~ 295 (505)
++.++.+||+||+|+|.+.++...+.+++..+. ..+|++.||||+.-.. +.+.
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lm 415 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLM 415 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHH
Confidence 567889999999999999999999999988775 5689999999975322 2222
Q ss_pred HHHc--cCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEE
Q 010649 296 RQYL--YNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALS 373 (505)
Q Consensus 296 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~ 373 (505)
+... ..|..+-+.... .....+......|+..+|--.|..+|.. -.+++|||||+++.+..|+-+|+..+++...
T Consensus 416 k~ig~~~kpkiiD~t~q~-~ta~~l~Es~I~C~~~eKD~ylyYfl~r--yPGrTlVF~NsId~vKRLt~~L~~L~i~p~~ 492 (731)
T KOG0347|consen 416 KKIGFRGKPKIIDLTPQS-ATASTLTESLIECPPLEKDLYLYYFLTR--YPGRTLVFCNSIDCVKRLTVLLNNLDIPPLP 492 (731)
T ss_pred HHhCccCCCeeEecCcch-hHHHHHHHHhhcCCccccceeEEEEEee--cCCceEEEechHHHHHHHHHHHhhcCCCCch
Confidence 2211 112111111111 1111111112222222222222222222 2358999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccH
Q 010649 374 IHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (505)
Q Consensus 374 lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 453 (505)
+|+.|.+.+|-+.+++|++....||||||+++||+|||+|.|||||-.|.+.+.|+||.||+.|++..|..++++.+.+.
T Consensus 493 LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~ 572 (731)
T KOG0347|consen 493 LHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEV 572 (731)
T ss_pred hhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHh
Q 010649 454 RFAKELITILEEA 466 (505)
Q Consensus 454 ~~~~~l~~~l~~~ 466 (505)
..+..|+.-|...
T Consensus 573 ~~~~KL~ktL~k~ 585 (731)
T KOG0347|consen 573 GPLKKLCKTLKKK 585 (731)
T ss_pred HHHHHHHHHHhhc
Confidence 8888888877654
No 32
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.5e-55 Score=404.26 Aligned_cols=370 Identities=34% Similarity=0.583 Sum_probs=338.0
Q ss_pred CCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010649 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (505)
Q Consensus 98 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vli 177 (505)
+.+|++++|++.+++.+...||.+|+.+|+.||..+..|.|+++.+++|+|||.+|.+++++++.. +.....+|+
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~-----~~ke~qali 99 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM-----SVKETQALI 99 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc-----chHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999999999988743 223566999
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHH-hcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcc
Q 010649 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL-QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256 (505)
Q Consensus 178 l~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~-~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah 256 (505)
++|+++||.|+++....++...+.++..+.||.....+...+ ...++|+++||+++.+++....+....++++|+||+|
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaD 179 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEAD 179 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchH
Confidence 999999999999999999999999999999998887554444 4458999999999999999888888889999999999
Q ss_pred hhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHH
Q 010649 257 RMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVK 336 (505)
Q Consensus 257 ~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 336 (505)
.++..+|..++..+...++++.|++++|||.|.++..+.+.++.+|+.+.....++. ...++|.+..+....|+..|.+
T Consensus 180 EmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~lt-l~gikq~~i~v~k~~k~~~l~d 258 (397)
T KOG0327|consen 180 EMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELT-LEGIKQFYINVEKEEKLDTLCD 258 (397)
T ss_pred hhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhh-hhheeeeeeeccccccccHHHH
Confidence 999999999999999999999999999999999999999999999999999888844 6677788777777779999999
Q ss_pred HHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEE
Q 010649 337 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYV 416 (505)
Q Consensus 337 ~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~V 416 (505)
+.. .-...+||||+++.++.+...|...++.+..+|++|.+.+|+.++..|+.|..+|||+|+.+++|+|+..+..|
T Consensus 259 l~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slv 335 (397)
T KOG0327|consen 259 LYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLV 335 (397)
T ss_pred HHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhccee
Confidence 888 33578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHHhCCCCCHHHHH
Q 010649 417 INYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAA 476 (505)
Q Consensus 417 i~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~i~~~l~~ 476 (505)
|+|++|.+.++|+||+||+||.|.+|.++.+++..+.+.++++.+++.-.-.++|....+
T Consensus 336 inydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~~ 395 (397)
T KOG0327|consen 336 VNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFAD 395 (397)
T ss_pred eeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchhh
Confidence 999999999999999999999999999999999999999999887776666666655443
No 33
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.2e-55 Score=407.45 Aligned_cols=362 Identities=35% Similarity=0.570 Sum_probs=340.0
Q ss_pred CCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010649 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (505)
Q Consensus 98 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vli 177 (505)
--.|+.++|+..+++++.+.||..|+|+|+..+|.++++++++..+-||||||.+|++|+++++.... ..+-++++
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s----~~g~Rali 95 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS----QTGLRALI 95 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc----ccccceee
Confidence 46799999999999999999999999999999999999999999999999999999999999998753 34678999
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcch
Q 010649 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (505)
Q Consensus 178 l~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~ 257 (505)
++||++||.|..+..+.++...+++.++++||.+..+++..+..++|||++||+++.++.-.....|+.+.||||||+|+
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadr 175 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADR 175 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhH
Confidence 99999999999999999999999999999999999999999999999999999999887766667899999999999999
Q ss_pred hhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHH
Q 010649 258 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL 337 (505)
Q Consensus 258 ~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 337 (505)
+..++|.+++.+++..++.++|+++||||+|+.+-++++.-+.+|..+.+.... ..+..++..+..+...+|...|+.+
T Consensus 176 lfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvet-kise~lk~~f~~~~~a~K~aaLl~i 254 (529)
T KOG0337|consen 176 LFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVET-KISELLKVRFFRVRKAEKEAALLSI 254 (529)
T ss_pred HHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhh-hcchhhhhheeeeccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998866544 5666777778888999999999999
Q ss_pred HHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEE
Q 010649 338 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI 417 (505)
Q Consensus 338 l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi 417 (505)
+.....+++++|||.++.+++.+...|+..++.+..++|.+++..|..-+.+|+.++..+||.|+++++|+|||-.+.||
T Consensus 255 l~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvi 334 (529)
T KOG0337|consen 255 LGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVI 334 (529)
T ss_pred HhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccc
Confidence 99887778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHH
Q 010649 418 NYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILE 464 (505)
Q Consensus 418 ~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~ 464 (505)
|||.|.+...|+||+||+.|+|+.|.+|.++.+++..++-+|..++.
T Consensus 335 nyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflg 381 (529)
T KOG0337|consen 335 NYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLG 381 (529)
T ss_pred cccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcC
Confidence 99999999999999999999999999999999999888888776654
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=4.9e-52 Score=443.01 Aligned_cols=330 Identities=21% Similarity=0.300 Sum_probs=266.6
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHH
Q 010649 106 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (505)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La 185 (505)
+++.+.+.+++.||.+|+++|.++|+.+++|+|+++++|||||||++|++|+++.+...+ ++++|||+||++||
T Consensus 21 l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~------~~~aL~l~PtraLa 94 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDP------RATALYLAPTKALA 94 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCC------CcEEEEEcChHHHH
Confidence 889999999999999999999999999999999999999999999999999999987632 67899999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHcc----CCccCCccEEEEcCcchhhcC
Q 010649 186 VQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH----NTNLRRVTYLVLDEADRMLDM 261 (505)
Q Consensus 186 ~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~----~~~l~~~~~lVlDEah~~~~~ 261 (505)
.|+.+.++++. ..++++..+.|+.+. .+...+...++|+|+||++|...+... ...++++++|||||||.+.+.
T Consensus 95 ~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~ 172 (742)
T TIGR03817 95 ADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGV 172 (742)
T ss_pred HHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCc
Confidence 99999999987 446788777777654 444566677999999999986533221 123788999999999999763
Q ss_pred CCHHHHHHHHHhc-------CCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeecc---------
Q 010649 262 GFEPQIKKILSQI-------RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIV--------- 325 (505)
Q Consensus 262 ~~~~~~~~il~~~-------~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 325 (505)
|...+..++..+ ..++|++++|||+++..+ +++.++..+..+. .... .........+...
T Consensus 173 -fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i-~~~~-~~~~~~~~~~~~p~~~~~~~~~ 248 (742)
T TIGR03817 173 -FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAV-TEDG-SPRGARTVALWEPPLTELTGEN 248 (742)
T ss_pred -cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEE-CCCC-CCcCceEEEEecCCcccccccc
Confidence 677666555443 467899999999998654 6777777775543 2221 1111111111100
Q ss_pred -------ChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC--------CCCeEEEcCCCCHHHHHHHHHHH
Q 010649 326 -------SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--------GWPALSIHGDKSQAERDWVLSEF 390 (505)
Q Consensus 326 -------~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~--------~~~~~~lhg~~~~~~r~~~~~~f 390 (505)
....+...+..++. .+.++||||+|++.|+.++..|++. +..+..+||++++++|..++++|
T Consensus 249 ~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f 325 (742)
T TIGR03817 249 GAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERAL 325 (742)
T ss_pred ccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHH
Confidence 01234444545544 3569999999999999999988753 56788999999999999999999
Q ss_pred hcCCCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecC
Q 010649 391 KAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTA 450 (505)
Q Consensus 391 ~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~ 450 (505)
++|++++||||+++++|||||++++||++++|.+.++|+||+||+||.|+.|.++++...
T Consensus 326 ~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~ 385 (742)
T TIGR03817 326 RDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARD 385 (742)
T ss_pred HcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCC
Confidence 999999999999999999999999999999999999999999999999999999998874
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=4.4e-52 Score=405.45 Aligned_cols=355 Identities=30% Similarity=0.473 Sum_probs=318.7
Q ss_pred cCCCCCCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCC
Q 010649 91 GRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG 170 (505)
Q Consensus 91 ~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~ 170 (505)
++-.+.....|+++-+...++..|...+|..|+++|..|||+++.+-|+|++|..|+|||++|.+.++..+... .
T Consensus 17 ~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~-----~ 91 (980)
T KOG4284|consen 17 IDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR-----S 91 (980)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc-----c
Confidence 33446667789999999999999999999999999999999999999999999999999999998888776543 2
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhcC-CCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccE
Q 010649 171 DGPIVLVLAPTRELAVQIQQESTKFGA-SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTY 249 (505)
Q Consensus 171 ~~~~vlil~Pt~~La~Q~~~~~~~~~~-~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~ 249 (505)
..+..+||+||||+|.|+.+.+.+++. ..+.++.++.||+........+.. ++|+|+||+++..+++.+.++.+++.+
T Consensus 92 ~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vrl 170 (980)
T KOG4284|consen 92 SHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVRL 170 (980)
T ss_pred CcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccceeE
Confidence 467899999999999999999999987 467899999999988777766654 789999999999999999999999999
Q ss_pred EEEcCcchhhc-CCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccCh-
Q 010649 250 LVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE- 327 (505)
Q Consensus 250 lVlDEah~~~~-~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 327 (505)
+|+||||.+.+ ..|..++..|+..++..+|++.+|||.|..+..++..|+.+|..+.+...+ .....++|++.....
T Consensus 171 fVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d-~~L~GikQyv~~~~s~ 249 (980)
T KOG4284|consen 171 FVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADD-VQLFGIKQYVVAKCSP 249 (980)
T ss_pred EEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCC-ceeechhheeeeccCC
Confidence 99999999998 559999999999999999999999999999999999999999999887766 444567777765543
Q ss_pred -------hHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEE
Q 010649 328 -------SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTA 400 (505)
Q Consensus 328 -------~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVa 400 (505)
..|++.|-.+++.+.- .++||||+....|+-++.+|...|++|.+|.|.|++.+|..+++.+++-.++|||+
T Consensus 250 nnsveemrlklq~L~~vf~~ipy-~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVs 328 (980)
T KOG4284|consen 250 NNSVEEMRLKLQKLTHVFKSIPY-VQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVS 328 (980)
T ss_pred cchHHHHHHHHHHHHHHHhhCch-HHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEe
Confidence 2466777777766533 47999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccH
Q 010649 401 TDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (505)
Q Consensus 401 T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 453 (505)
||..+||||-+++++|||.|.|-+.++|.||||||||.|..|.+++|+.....
T Consensus 329 TDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 329 TDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred cchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 99999999999999999999999999999999999999999999999987754
No 36
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=5.1e-50 Score=424.39 Aligned_cols=344 Identities=22% Similarity=0.315 Sum_probs=266.6
Q ss_pred CCcCCCC--CHHHHHHHH-HcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 010649 100 SFRDVGF--PDYVMQEIS-KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (505)
Q Consensus 100 ~f~~~~l--~~~~~~~l~-~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vl 176 (505)
.|...++ ...+...++ ..|+..++|+|.++|+.++.|+|+++++|||+|||++|++|++.. ...+|
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----------~GiTL 504 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----------PGITL 504 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----------CCcEE
Confidence 4554444 344544444 368999999999999999999999999999999999999999854 34699
Q ss_pred EEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHh------cCCcEEEeChHHHHH--HHHcc---CCccC
Q 010649 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ------KGVEIVIATPGRLID--MLESH---NTNLR 245 (505)
Q Consensus 177 il~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~------~~~~Iiv~T~~~l~~--~l~~~---~~~l~ 245 (505)
||+|+++|+.++...+... ++....+.++....++...+. ..++|+++||++|.. .+... .....
T Consensus 505 VISPLiSLmqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~ 580 (1195)
T PLN03137 505 VISPLVSLIQDQIMNLLQA----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRG 580 (1195)
T ss_pred EEeCHHHHHHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcc
Confidence 9999999998666666553 488888889887666544332 358999999999852 22211 11234
Q ss_pred CccEEEEcCcchhhcCC--CHHHHHHH--HHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeee
Q 010649 246 RVTYLVLDEADRMLDMG--FEPQIKKI--LSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQH 321 (505)
Q Consensus 246 ~~~~lVlDEah~~~~~~--~~~~~~~i--l~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (505)
.+.+|||||||++++++ |.+.+..+ +...-+..+++++|||++..+.+.+...+.....+.+.... ...++...
T Consensus 581 ~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf--~RpNL~y~ 658 (1195)
T PLN03137 581 LLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSF--NRPNLWYS 658 (1195)
T ss_pred ccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeeccc--CccceEEE
Confidence 58899999999999987 77877653 44444678999999999998887666555433222222211 11222222
Q ss_pred eeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc
Q 010649 322 VDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT 401 (505)
Q Consensus 322 ~~~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT 401 (505)
+. .........+..++.....+.+.||||.+++.|+.++..|+..++.+..+||+|++.+|..++++|.+|+++|||||
T Consensus 659 Vv-~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVAT 737 (1195)
T PLN03137 659 VV-PKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICAT 737 (1195)
T ss_pred Ee-ccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEe
Confidence 21 11222345566666655445689999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHH
Q 010649 402 DVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIT 461 (505)
Q Consensus 402 ~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 461 (505)
+++++|||+|+|++||||++|.|++.|+||+|||||.|..+.|++|+...|......++.
T Consensus 738 dAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 738 VAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred chhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999877666555553
No 37
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.4e-50 Score=410.78 Aligned_cols=325 Identities=26% Similarity=0.384 Sum_probs=257.1
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010649 116 KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (505)
Q Consensus 116 ~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 195 (505)
..||..|+|+|.++|+.+++++++++++|||+|||++|++|++.. +..+|||+|+++|+.|+.+.+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----------~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----------DGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----------CCcEEEEecHHHHHHHHHHHHHHc
Confidence 468999999999999999999999999999999999999998853 446999999999999999988875
Q ss_pred cCCCCceEEEEECCCCchHHH---HHH-hcCCcEEEeChHHHHHH---HHccCCccCCccEEEEcCcchhhcCC--CHHH
Q 010649 196 GASSKIKSTCIYGGVPKGPQV---RDL-QKGVEIVIATPGRLIDM---LESHNTNLRRVTYLVLDEADRMLDMG--FEPQ 266 (505)
Q Consensus 196 ~~~~~i~~~~~~gg~~~~~~~---~~~-~~~~~Iiv~T~~~l~~~---l~~~~~~l~~~~~lVlDEah~~~~~~--~~~~ 266 (505)
+ +.+..+.++....+.. ..+ ...++|+++||+++... +... ....++++|||||||++.+++ |.+.
T Consensus 75 g----i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l-~~~~~i~~iViDEaH~i~~~g~~fr~~ 149 (470)
T TIGR00614 75 G----IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTL-EERKGITLIAVDEAHCISQWGHDFRPD 149 (470)
T ss_pred C----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHH-HhcCCcCEEEEeCCcccCccccccHHH
Confidence 4 6666677665544322 222 23479999999997532 2111 146789999999999999876 6666
Q ss_pred HHHH--HHhcCCCCceEEecCCChHHHHHHHHHHcc--CCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhhc
Q 010649 267 IKKI--LSQIRPDRQTLYWSATWPKEVEHLARQYLY--NPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM 342 (505)
Q Consensus 267 ~~~i--l~~~~~~~~~v~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~ 342 (505)
+..+ +....++.+++++|||+++.+.......+. ++..+. .... ..++...+.. ........+..++....
T Consensus 150 ~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~-~s~~---r~nl~~~v~~-~~~~~~~~l~~~l~~~~ 224 (470)
T TIGR00614 150 YKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFC-TSFD---RPNLYYEVRR-KTPKILEDLLRFIRKEF 224 (470)
T ss_pred HHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEe-CCCC---CCCcEEEEEe-CCccHHHHHHHHHHHhc
Confidence 6554 333347889999999999887665555432 333322 2211 1122222211 11235556777776555
Q ss_pred CCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCC
Q 010649 343 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFP 422 (505)
Q Consensus 343 ~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p 422 (505)
++.++||||++++.|+.++..|+..++.+..+|++|++.+|..+++.|++|+++|||||+++++|||+|++++||++++|
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P 304 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLP 304 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCC
Confidence 66678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHH
Q 010649 423 GSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIT 461 (505)
Q Consensus 423 ~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 461 (505)
.|++.|+||+||+||.|..|.|++|+++.|...++.++.
T Consensus 305 ~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 305 KSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred CCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 999999999999999999999999999988777666654
No 38
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.6e-51 Score=387.06 Aligned_cols=350 Identities=29% Similarity=0.473 Sum_probs=291.4
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHhc---------CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc
Q 010649 110 VMQEISKAGFFEPTPIQAQGWPMALK---------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (505)
Q Consensus 110 ~~~~l~~~~~~~~~~~Q~~~i~~~l~---------~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P 180 (505)
+.+.+.++++..+.|+|..++|+++. .+|+++.||||||||++|.+|+++.+...+. +.-++|||+|
T Consensus 148 ~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v----~~LRavVivP 223 (620)
T KOG0350|consen 148 IDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPV----KRLRAVVIVP 223 (620)
T ss_pred HHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCc----cceEEEEEee
Confidence 44558899999999999999999863 4789999999999999999999999887542 3577999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcC-----CcEEEeChHHHHHHHHc-cCCccCCccEEEEcC
Q 010649 181 TRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKG-----VEIVIATPGRLIDMLES-HNTNLRRVTYLVLDE 254 (505)
Q Consensus 181 t~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~-----~~Iiv~T~~~l~~~l~~-~~~~l~~~~~lVlDE 254 (505)
|++|+.|+++++.++....++.|+.+.|..+...+...+... .||+|+||++|.+++.+ +.++|+++.++|+||
T Consensus 224 tr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDE 303 (620)
T KOG0350|consen 224 TRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDE 303 (620)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEech
Confidence 999999999999999999999999999988888777777654 38999999999999985 678899999999999
Q ss_pred cchhhcCCCHHHHHHHHHhcC----------------------------------CCCceEEecCCChHHHHHHHHHHcc
Q 010649 255 ADRMLDMGFEPQIKKILSQIR----------------------------------PDRQTLYWSATWPKEVEHLARQYLY 300 (505)
Q Consensus 255 ah~~~~~~~~~~~~~il~~~~----------------------------------~~~~~v~~SAT~~~~~~~~~~~~~~ 300 (505)
||||++..|..++-.+...+. +..+.+++|||+..+-..+...-+.
T Consensus 304 ADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~ 383 (620)
T KOG0350|consen 304 ADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLH 383 (620)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcC
Confidence 999998777666665543331 2234678889887777777777777
Q ss_pred CCcEEEEcCC---CcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHH----hCCCCeEE
Q 010649 301 NPYKVIIGSP---DLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLR----MDGWPALS 373 (505)
Q Consensus 301 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~----~~~~~~~~ 373 (505)
.|..+.+..+ .+..+..+.+....+....|...+..++... +..++|+|+++...+..++..|+ +..+.+..
T Consensus 384 ~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~-k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~ 462 (620)
T KOG0350|consen 384 IPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN-KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSE 462 (620)
T ss_pred CCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh-hcceEEEEecchHHHHHHHHHHHHHhccccchhhh
Confidence 7755554432 2233444555555555556677777777654 45689999999999999999887 34667778
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccH
Q 010649 374 IHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (505)
Q Consensus 374 lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 453 (505)
+.|.++...|.+.+.+|..|.+.||||+|+++||+|+.+++.||+||+|.+..+|+||+||++|+|+.|.|+.+.+..+.
T Consensus 463 ~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~ 542 (620)
T KOG0350|consen 463 FTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEK 542 (620)
T ss_pred hhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHH
Q 010649 454 RFAKELITILE 464 (505)
Q Consensus 454 ~~~~~l~~~l~ 464 (505)
..+.++++...
T Consensus 543 r~F~klL~~~~ 553 (620)
T KOG0350|consen 543 RLFSKLLKKTN 553 (620)
T ss_pred hHHHHHHHHhc
Confidence 77776666443
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.1e-47 Score=404.29 Aligned_cols=332 Identities=23% Similarity=0.372 Sum_probs=257.4
Q ss_pred CHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHH
Q 010649 107 PDYVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (505)
Q Consensus 107 ~~~~~~~l~~-~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La 185 (505)
++...+.+++ .||..++|+|.++++.+++++++++++|||+|||++|++|++.. ...+|||+|+++|+
T Consensus 10 ~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----------~g~tlVisPl~sL~ 78 (607)
T PRK11057 10 ESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----------DGLTLVVSPLISLM 78 (607)
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------CCCEEEEecHHHHH
Confidence 3344444443 69999999999999999999999999999999999999999854 33599999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEECCCCchHHHH---HHh-cCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcC
Q 010649 186 VQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM 261 (505)
Q Consensus 186 ~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~ 261 (505)
.|+.+.+..++ +....+.++........ .+. ...+++++||++|............++++|||||||++.++
T Consensus 79 ~dqv~~l~~~g----i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~ 154 (607)
T PRK11057 79 KDQVDQLLANG----VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQW 154 (607)
T ss_pred HHHHHHHHHcC----CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccc
Confidence 99999988764 66666666655444322 222 34789999999986322112233457899999999999987
Q ss_pred C--CHHHHHHH--HHhcCCCCceEEecCCChHHHHHHHHHHc--cCCcEEEEcCCCcccccceeeeeeccChhHHHHHHH
Q 010649 262 G--FEPQIKKI--LSQIRPDRQTLYWSATWPKEVEHLARQYL--YNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLV 335 (505)
Q Consensus 262 ~--~~~~~~~i--l~~~~~~~~~v~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 335 (505)
+ |.+.+..+ +....++.+++++|||++..+.......+ .+|.. ...... ..++. +.......+...+.
T Consensus 155 G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~-~~~~~~---r~nl~--~~v~~~~~~~~~l~ 228 (607)
T PRK11057 155 GHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLI-QISSFD---RPNIR--YTLVEKFKPLDQLM 228 (607)
T ss_pred cCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEE-EECCCC---CCcce--eeeeeccchHHHHH
Confidence 6 66665544 22333688999999999987765444433 23332 222211 11221 22223334455666
Q ss_pred HHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCE
Q 010649 336 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKY 415 (505)
Q Consensus 336 ~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~ 415 (505)
..+... .+.++||||+++++|+.++..|++.++.+..+|++|++.+|..+++.|+.|+++|||||+++++|||+|++++
T Consensus 229 ~~l~~~-~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~ 307 (607)
T PRK11057 229 RYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRF 307 (607)
T ss_pred HHHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCE
Confidence 666543 4568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHH
Q 010649 416 VINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELI 460 (505)
Q Consensus 416 Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 460 (505)
||+|++|.|.++|+||+||+||.|..|.|++|+++.|...++.++
T Consensus 308 VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 308 VVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred EEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 999999999999999999999999999999999998876655544
No 40
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=9.5e-48 Score=414.63 Aligned_cols=336 Identities=22% Similarity=0.309 Sum_probs=262.2
Q ss_pred CCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010649 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (505)
Q Consensus 100 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil 178 (505)
.|+++++|+.+++.+.+.|+.+|+|+|.++++. +++++|++++||||||||++|.+|++.++.. +.++|||
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~--------~~kal~i 73 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR--------GGKALYI 73 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc--------CCcEEEE
Confidence 578899999999999999999999999999998 6789999999999999999999999998853 5679999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchh
Q 010649 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 258 (505)
Q Consensus 179 ~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~ 258 (505)
+|+++||.|+.+.+.++.. .++++..++|+...... ....++|+|+||+++..++.+....+.++++||+||+|.+
T Consensus 74 ~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l 149 (737)
T PRK02362 74 VPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLI 149 (737)
T ss_pred eChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcccc
Confidence 9999999999999998753 47888889988654332 2245799999999998888776666789999999999999
Q ss_pred hcCCCHHHHHHHHHhc---CCCCceEEecCCChHHHHHHHHHHccC-------CcEEEE--cCCCcccccceeeeeeccC
Q 010649 259 LDMGFEPQIKKILSQI---RPDRQTLYWSATWPKEVEHLARQYLYN-------PYKVII--GSPDLKANHAIRQHVDIVS 326 (505)
Q Consensus 259 ~~~~~~~~~~~il~~~---~~~~~~v~~SAT~~~~~~~~~~~~~~~-------~~~~~~--~~~~~~~~~~~~~~~~~~~ 326 (505)
.+.+++..++.++..+ .+..|+|++|||+++ ..+++.+.... |..+.. ..............+....
T Consensus 150 ~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~ 228 (737)
T PRK02362 150 DSANRGPTLEVTLAKLRRLNPDLQVVALSATIGN-ADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPS 228 (737)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCC-HHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCcc
Confidence 9988899888887665 478999999999975 34444433221 111110 0000000000000010011
Q ss_pred hhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCC------------------------------------CC
Q 010649 327 ESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDG------------------------------------WP 370 (505)
Q Consensus 327 ~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~------------------------------------~~ 370 (505)
.......+.+. ...++++||||++++.|+.++..|.... ..
T Consensus 229 ~~~~~~~~~~~---~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~g 305 (737)
T PRK02362 229 KDDTLNLVLDT---LEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKG 305 (737)
T ss_pred chHHHHHHHHH---HHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhC
Confidence 11222223332 3356799999999999999888875421 35
Q ss_pred eEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEE----cC-----CCCChhHHHHhhcccccCCCc
Q 010649 371 ALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YD-----FPGSLEDYVHRIGRTGRAGAK 441 (505)
Q Consensus 371 ~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~----~~-----~p~s~~~~~Qr~GR~~R~g~~ 441 (505)
+..+|++|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.+..+|.||+|||||.|.+
T Consensus 306 va~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d 385 (737)
T PRK02362 306 AAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLD 385 (737)
T ss_pred EEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 788999999999999999999999999999999999999999999996 66 578899999999999999876
Q ss_pred --cEEEEEecCc
Q 010649 442 --GTAYTFFTAA 451 (505)
Q Consensus 442 --g~~~~~~~~~ 451 (505)
|.+++++...
T Consensus 386 ~~G~~ii~~~~~ 397 (737)
T PRK02362 386 PYGEAVLLAKSY 397 (737)
T ss_pred CCceEEEEecCc
Confidence 8899988664
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=2.1e-46 Score=407.54 Aligned_cols=343 Identities=22% Similarity=0.272 Sum_probs=254.7
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCC-CCCCCEEEEEcccHHH
Q 010649 106 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA-PGDGPIVLVLAPTREL 184 (505)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~-~~~~~~vlil~Pt~~L 184 (505)
+++.+.+.+.+ +|..|+|+|.++|+.+++++|++++||||||||++|++|++.++....... ...++++|||+|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56666666555 788999999999999999999999999999999999999999887532211 1346789999999999
Q ss_pred HHHHHHHHHH-------h----cCCC-CceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCC--ccCCccEE
Q 010649 185 AVQIQQESTK-------F----GASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT--NLRRVTYL 250 (505)
Q Consensus 185 a~Q~~~~~~~-------~----~~~~-~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~--~l~~~~~l 250 (505)
++|+++.+.. + +... ++++...+|+.+.......+.+.++|+|+||++|..++.+... .+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999875542 2 2233 6788999999888777777777899999999999877765433 47889999
Q ss_pred EEcCcchhhcCCCHHHHHHHHHh----cCCCCceEEecCCChHHHHHHHHHHccC-----CcEEEEcCCCcccccceeee
Q 010649 251 VLDEADRMLDMGFEPQIKKILSQ----IRPDRQTLYWSATWPKEVEHLARQYLYN-----PYKVIIGSPDLKANHAIRQH 321 (505)
Q Consensus 251 VlDEah~~~~~~~~~~~~~il~~----~~~~~~~v~~SAT~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 321 (505)
|+||+|.+.+..+...+..++.. ..+..|++++|||+++ ...++...... +..+.+..........+...
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~ 255 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVI 255 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEEccCCCccceEEEe
Confidence 99999999987766665554433 3467899999999976 33444333221 21111111110111111100
Q ss_pred -----eeccChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhC------CCCeEEEcCCCCHHHHHHHHHH
Q 010649 322 -----VDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMD------GWPALSIHGDKSQAERDWVLSE 389 (505)
Q Consensus 322 -----~~~~~~~~k~~~l~~~l~~~-~~~~~vlVF~~~~~~~~~l~~~L~~~------~~~~~~lhg~~~~~~r~~~~~~ 389 (505)
............+...+.+. ...+++||||+|+..|+.++..|++. +..+..+||++++++|..+++.
T Consensus 256 ~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~ 335 (876)
T PRK13767 256 SPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEK 335 (876)
T ss_pred ccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHH
Confidence 00011112223333333332 33568999999999999999999873 4679999999999999999999
Q ss_pred HhcCCCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccC-CCccEEEEEecC
Q 010649 390 FKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA-GAKGTAYTFFTA 450 (505)
Q Consensus 390 f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~-g~~g~~~~~~~~ 450 (505)
|++|+++|||||+++++|||+|++++||+++.|.+..+|+||+||+||. |..+.++++...
T Consensus 336 fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 336 LKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred HHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 9999999999999999999999999999999999999999999999986 334445555443
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.1e-46 Score=397.96 Aligned_cols=322 Identities=24% Similarity=0.376 Sum_probs=257.7
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 117 ~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
.||.+++|+|.++|+.++.|+|+++++|||+|||++|++|++.. ...++||+|+++|+.|+.+.+..++
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----------~g~~lVisPl~sL~~dq~~~l~~~g 77 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----------KGLTVVISPLISLMKDQVDQLRAAG 77 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999998853 3358999999999999999988864
Q ss_pred CCCCceEEEEECCCCchHHHHH----HhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCC--CHHHHHHH
Q 010649 197 ASSKIKSTCIYGGVPKGPQVRD----LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG--FEPQIKKI 270 (505)
Q Consensus 197 ~~~~i~~~~~~gg~~~~~~~~~----~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~--~~~~~~~i 270 (505)
+.+..+.++.+..+.... .....+|+++||++|............++++|||||||++.+++ |.+.+..+
T Consensus 78 ----i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l 153 (591)
T TIGR01389 78 ----VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRL 153 (591)
T ss_pred ----CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHH
Confidence 677777777665443222 23458999999999865333333445689999999999999865 77766655
Q ss_pred HHhc--CCCCceEEecCCChHHHHHHHHHHccC--CcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCe
Q 010649 271 LSQI--RPDRQTLYWSATWPKEVEHLARQYLYN--PYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSR 346 (505)
Q Consensus 271 l~~~--~~~~~~v~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 346 (505)
.... -+..+++++|||++..+.......+.. +..+ .... ...++. +.......+...+.+.+.... +.+
T Consensus 154 ~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~-~~~~---~r~nl~--~~v~~~~~~~~~l~~~l~~~~-~~~ 226 (591)
T TIGR01389 154 GSLAERFPQVPRIALTATADAETRQDIRELLRLADANEF-ITSF---DRPNLR--FSVVKKNNKQKFLLDYLKKHR-GQS 226 (591)
T ss_pred HHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeE-ecCC---CCCCcE--EEEEeCCCHHHHHHHHHHhcC-CCC
Confidence 3322 245569999999998887766665542 3222 2111 111222 222334456667777777643 568
Q ss_pred EEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCCChh
Q 010649 347 ILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLE 426 (505)
Q Consensus 347 vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~ 426 (505)
+||||++++.|+.++..|...++++..+|++|+.++|..+++.|.+|+++|||||+++++|||+|++++||++++|.|.+
T Consensus 227 ~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~ 306 (591)
T TIGR01389 227 GIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLE 306 (591)
T ss_pred EEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccCCCccEEEEEecCccHHHHHHHH
Q 010649 427 DYVHRIGRTGRAGAKGTAYTFFTAANARFAKELI 460 (505)
Q Consensus 427 ~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 460 (505)
.|+|++||+||.|..+.|+++++..|....+.++
T Consensus 307 ~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 307 SYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred HHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 9999999999999999999999988765554443
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=4.7e-46 Score=400.53 Aligned_cols=337 Identities=20% Similarity=0.249 Sum_probs=262.7
Q ss_pred CCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010649 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (505)
Q Consensus 100 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil 178 (505)
+|+++++++.+.+.+++.|+.+|+|+|.++++. +++++|+++++|||||||++|.+|++.++... +.++|||
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-------~~~~l~l 74 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-------GGKAVYL 74 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc-------CCeEEEE
Confidence 477889999999999999999999999999986 78999999999999999999999999887652 5689999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchh
Q 010649 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 258 (505)
Q Consensus 179 ~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~ 258 (505)
+|+++|+.|+++.+..+. ..++++..++|+...... ....++|+|+||+++..++......++++++||+||+|.+
T Consensus 75 ~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l 150 (720)
T PRK00254 75 VPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLI 150 (720)
T ss_pred eChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCcc
Confidence 999999999999998864 457889999998765432 2356899999999998888776667889999999999999
Q ss_pred hcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccCh-------hHHH
Q 010649 259 LDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE-------SQKY 331 (505)
Q Consensus 259 ~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~k~ 331 (505)
.+.++...++.++..+....|+|++|||+++ ..+++.. +..........+.........+....... ....
T Consensus 151 ~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~w-l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (720)
T PRK00254 151 GSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAEW-LNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWE 228 (720)
T ss_pred CCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHHH-hCCccccCCCCCCcceeeEecCCeeeccCcchhcchHHHH
Confidence 9988999999999999999999999999976 4556554 33222111001000000001111111111 1111
Q ss_pred HHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC---------------------------------CCCeEEEcCCC
Q 010649 332 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD---------------------------------GWPALSIHGDK 378 (505)
Q Consensus 332 ~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~---------------------------------~~~~~~lhg~~ 378 (505)
..+.+.+. .++++||||++++.|+.++..|... ...+..+|++|
T Consensus 229 ~~~~~~i~---~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl 305 (720)
T PRK00254 229 SLVYDAVK---KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGL 305 (720)
T ss_pred HHHHHHHH---hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCC
Confidence 22233332 4578999999999998877666321 23588999999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEE-------cCCCC-ChhHHHHhhcccccCC--CccEEEEEe
Q 010649 379 SQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN-------YDFPG-SLEDYVHRIGRTGRAG--AKGTAYTFF 448 (505)
Q Consensus 379 ~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~-------~~~p~-s~~~~~Qr~GR~~R~g--~~g~~~~~~ 448 (505)
++++|..+++.|++|.++|||||+++++|+|+|++++||. ++.|. +..+|.||+|||||.| ..|.+++++
T Consensus 306 ~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~ 385 (720)
T PRK00254 306 GRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVA 385 (720)
T ss_pred CHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEe
Confidence 9999999999999999999999999999999999999994 44433 4679999999999975 569999998
Q ss_pred cCcc
Q 010649 449 TAAN 452 (505)
Q Consensus 449 ~~~~ 452 (505)
...+
T Consensus 386 ~~~~ 389 (720)
T PRK00254 386 TTEE 389 (720)
T ss_pred cCcc
Confidence 8655
No 44
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=4.4e-44 Score=385.17 Aligned_cols=336 Identities=21% Similarity=0.225 Sum_probs=257.4
Q ss_pred CCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcC------CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010649 106 FPDYVMQEISK-AGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (505)
Q Consensus 106 l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~l~~------~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil 178 (505)
.+..+.+.+.+ .+| +|||+|.++|+.++++ .+.+++||||+|||.+|++|++..+.. +++++||
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--------g~qvlvL 506 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--------GKQVAVL 506 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--------CCeEEEE
Confidence 44566666665 466 6999999999999874 689999999999999999999888765 6789999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHH---HHHHhc-CCcEEEeChHHHHHHHHccCCccCCccEEEEcC
Q 010649 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDE 254 (505)
Q Consensus 179 ~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDE 254 (505)
+||++||.|+++.+.+++...++++..++++.+..+. ...+.. .++|+|+||..+ +....+.++++||+||
T Consensus 507 vPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDE 581 (926)
T TIGR00580 507 VPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDE 581 (926)
T ss_pred eCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeec
Confidence 9999999999999999888888888888887764433 233333 489999999432 3456788999999999
Q ss_pred cchhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHH
Q 010649 255 ADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKL 334 (505)
Q Consensus 255 ah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 334 (505)
+|++ ....+..+..+++++++++||||+.+....+......++..+..... ....+...+.........
T Consensus 582 ahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~---~R~~V~t~v~~~~~~~i~--- 650 (926)
T TIGR00580 582 EQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPE---DRLPVRTFVMEYDPELVR--- 650 (926)
T ss_pred cccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCC---CccceEEEEEecCHHHHH---
Confidence 9994 33445666777788999999999876665555444444443332211 112233333222221111
Q ss_pred HHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCC
Q 010649 335 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD 412 (505)
Q Consensus 335 ~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~ 412 (505)
..++.+...+++++|||++++.++.+++.|++. ++++..+||+|++.+|..++++|++|+++|||||+++++|||+|+
T Consensus 651 ~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~ 730 (926)
T TIGR00580 651 EAIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPN 730 (926)
T ss_pred HHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhccccccc
Confidence 122334445679999999999999999999984 788999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCC-ChhHHHHhhcccccCCCccEEEEEecCcc--HHHHHHHHHHHHHh
Q 010649 413 VKYVINYDFPG-SLEDYVHRIGRTGRAGAKGTAYTFFTAAN--ARFAKELITILEEA 466 (505)
Q Consensus 413 ~~~Vi~~~~p~-s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~--~~~~~~l~~~l~~~ 466 (505)
+++||+++.|. +..+|.||+||+||.|+.|.|++++...+ .+...+-++.+++.
T Consensus 731 v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 731 ANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred CCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHh
Confidence 99999999865 67899999999999999999999997653 13333334444443
No 45
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.2e-44 Score=378.83 Aligned_cols=314 Identities=21% Similarity=0.255 Sum_probs=244.8
Q ss_pred cCCCCCcHHHHHHHHHHhcCC-cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCE-EEEEcccHHHHHHHHHHHHH
Q 010649 117 AGFFEPTPIQAQGWPMALKGR-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI-VLVLAPTRELAVQIQQESTK 194 (505)
Q Consensus 117 ~~~~~~~~~Q~~~i~~~l~~~-~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~-vlil~Pt~~La~Q~~~~~~~ 194 (505)
.||. |+|||.++++.++.|+ ++++.+|||||||.++.++++.. .. ....++ +++++|||+||.|+++.+.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~-----~~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI-----GAKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc-----cccccceEEEeCchHHHHHHHHHHHHH
Confidence 5776 9999999999999998 57778999999998765544422 11 112344 45577999999999999999
Q ss_pred hcCCC-----------------------CceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCC---------
Q 010649 195 FGASS-----------------------KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT--------- 242 (505)
Q Consensus 195 ~~~~~-----------------------~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~--------- 242 (505)
++... ++++.+++||.+...++..+..+++|||+|+ +++.+..+
T Consensus 85 ~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~ 160 (844)
T TIGR02621 85 IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFK 160 (844)
T ss_pred HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccccccccc
Confidence 87644 4889999999999999999999999999996 44444333
Q ss_pred -------ccCCccEEEEcCcchhhcCCCHHHHHHHHHhc--CCC---CceEEecCCChHHHHHHHHHHccCCcEEEEcCC
Q 010649 243 -------NLRRVTYLVLDEADRMLDMGFEPQIKKILSQI--RPD---RQTLYWSATWPKEVEHLARQYLYNPYKVIIGSP 310 (505)
Q Consensus 243 -------~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~--~~~---~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 310 (505)
.+.++++||||||| ++++|...+..|++.+ ++. +|+++||||++.++..+...++.++..+.+...
T Consensus 161 ~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~ 238 (844)
T TIGR02621 161 SRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKK 238 (844)
T ss_pred cccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccc
Confidence 26789999999999 6789999999999975 332 699999999999888888888877776655443
Q ss_pred CcccccceeeeeeccChhHHHHHHHHHHHhh--cCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHH----
Q 010649 311 DLKANHAIRQHVDIVSESQKYNKLVKLLEDI--MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERD---- 384 (505)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~---- 384 (505)
.. ....+.+.+ .+....|...+...+... ...+++||||+|++.|+.+++.|++.++ ..+||+|++.+|.
T Consensus 239 ~l-~a~ki~q~v-~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~ 314 (844)
T TIGR02621 239 RL-AAKKIVKLV-PPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVK 314 (844)
T ss_pred cc-cccceEEEE-ecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHH
Confidence 32 223344433 334444544444333221 2346899999999999999999998876 8999999999999
Q ss_pred -HHHHHHhc----CC-------CcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcc-EEEEEecC
Q 010649 385 -WVLSEFKA----GK-------SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKG-TAYTFFTA 450 (505)
Q Consensus 385 -~~~~~f~~----g~-------~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g-~~~~~~~~ 450 (505)
.++++|++ +. ..|||||+++++||||+. ++||++..| .+.|+||+||++|.|+.+ ..+.++..
T Consensus 315 ~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 315 KEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 88999987 44 679999999999999986 888887777 799999999999999863 43555533
No 46
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=6.4e-45 Score=390.19 Aligned_cols=337 Identities=21% Similarity=0.277 Sum_probs=254.2
Q ss_pred CCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 010649 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (505)
Q Consensus 100 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~ 179 (505)
.|+++++++.+++.+.+.++. |+|+|.++++.+.++++++++||||||||++|.++++..+.. +.++||++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------~~k~v~i~ 72 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------GLKSIYIV 72 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------CCcEEEEe
Confidence 477889999999999998875 999999999999999999999999999999999999888764 46799999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhh
Q 010649 180 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (505)
Q Consensus 180 Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~ 259 (505)
|+++||.|+++++.++. ..++++...+|+...... ....++|+|+||+++..++.+....+.++++||+||+|.+.
T Consensus 73 P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~ 148 (674)
T PRK01172 73 PLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIG 148 (674)
T ss_pred chHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhcc
Confidence 99999999999999864 456788888887654332 23467999999999988887766678899999999999999
Q ss_pred cCCCHHHHHHHHHh---cCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHH
Q 010649 260 DMGFEPQIKKILSQ---IRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVK 336 (505)
Q Consensus 260 ~~~~~~~~~~il~~---~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 336 (505)
+..+...++.++.. ++++.|+|++|||+++ ..++++++...................................+..
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~wl~~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~ 227 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQWLNASLIKSNFRPVPLKLGILYRKRLILDGYERSQVDINS 227 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHHHhCCCccCCCCCCCCeEEEEEecCeeeecccccccccHHH
Confidence 88888888877654 4578999999999976 4556554322211100000000000000000000001111112333
Q ss_pred HHHh-hcCCCeEEEEeCCcccHHHHHHHHHhCC-------------------------CCeEEEcCCCCHHHHHHHHHHH
Q 010649 337 LLED-IMDGSRILIFMDTKKGCDQITRQLRMDG-------------------------WPALSIHGDKSQAERDWVLSEF 390 (505)
Q Consensus 337 ~l~~-~~~~~~vlVF~~~~~~~~~l~~~L~~~~-------------------------~~~~~lhg~~~~~~r~~~~~~f 390 (505)
++.+ ...++++||||++++.|+.++..|.+.. ..+..+|++|++++|..+++.|
T Consensus 228 ~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f 307 (674)
T PRK01172 228 LIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMF 307 (674)
T ss_pred HHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHH
Confidence 4443 3456799999999999999998886531 2467899999999999999999
Q ss_pred hcCCCcEEEEcccccccCCCCCCCEEEEcCC---------CCChhHHHHhhcccccCCC--ccEEEEEecCc
Q 010649 391 KAGKSPIMTATDVAARGLDVKDVKYVINYDF---------PGSLEDYVHRIGRTGRAGA--KGTAYTFFTAA 451 (505)
Q Consensus 391 ~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~---------p~s~~~~~Qr~GR~~R~g~--~g~~~~~~~~~ 451 (505)
++|.++|||||+++++|+|+|+..+|| .+. |.+..+|.||+|||||.|. .|.+++++...
T Consensus 308 ~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 308 RNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred HcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 999999999999999999999875555 332 4578899999999999985 47788776544
No 47
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=5.3e-44 Score=371.77 Aligned_cols=338 Identities=25% Similarity=0.301 Sum_probs=273.4
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHH
Q 010649 106 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (505)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La 185 (505)
|++.+.+.++.. |.+|||.|.+|||.+.+|+|++++||||||||+++++|++..+..........+..+|||+|.++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 788899999888 9999999999999999999999999999999999999999999886422334578899999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccC--CccCCccEEEEcCcchhhcCCC
Q 010649 186 VQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN--TNLRRVTYLVLDEADRMLDMGF 263 (505)
Q Consensus 186 ~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~--~~l~~~~~lVlDEah~~~~~~~ 263 (505)
+.+...+..++...++.+.+.+|+++..+..+...+.+||+|+|||.|.-++.... ..+.++.++|+||+|.+.+...
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 99999999999999999999999999888888888999999999999987776543 3588999999999999987766
Q ss_pred HHHHHHHHHhc---CCCCceEEecCCChHHHHHHHHHHccCC--cEEEEcCCCcccccceeeeeeccC-------hhHHH
Q 010649 264 EPQIKKILSQI---RPDRQTLYWSATWPKEVEHLARQYLYNP--YKVIIGSPDLKANHAIRQHVDIVS-------ESQKY 331 (505)
Q Consensus 264 ~~~~~~il~~~---~~~~~~v~~SAT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------~~~k~ 331 (505)
+.++...+..+ .++.|.+++|||..+ ....++.+.... ..+..... .....+.-...... ....+
T Consensus 167 G~~Lsl~LeRL~~l~~~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~--~k~~~i~v~~p~~~~~~~~~~~~~~~ 243 (814)
T COG1201 167 GVQLALSLERLRELAGDFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSA--AKKLEIKVISPVEDLIYDEELWAALY 243 (814)
T ss_pred chhhhhhHHHHHhhCcccEEEeehhccCC-HHHHHHHhcCCCCceEEEEccc--CCcceEEEEecCCccccccchhHHHH
Confidence 66555544443 238999999999874 556666655553 33322221 11111211111111 12233
Q ss_pred HHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCC-CCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCC
Q 010649 332 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDG-WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDV 410 (505)
Q Consensus 332 ~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~-~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi 410 (505)
..+.+++++ ...+|||+||+..++.++..|++.+ .++..+||+++.++|..++++|++|+.+++|||+.++-|||+
T Consensus 244 ~~i~~~v~~---~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDi 320 (814)
T COG1201 244 ERIAELVKK---HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDI 320 (814)
T ss_pred HHHHHHHhh---cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhcccc
Confidence 334444433 4489999999999999999999886 889999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCCChhHHHHhhccccc-CCCccEEEEEecC
Q 010649 411 KDVKYVINYDFPGSLEDYVHRIGRTGR-AGAKGTAYTFFTA 450 (505)
Q Consensus 411 ~~~~~Vi~~~~p~s~~~~~Qr~GR~~R-~g~~g~~~~~~~~ 450 (505)
-+++.||++..|.+...++||+||+|+ .+....++++...
T Consensus 321 G~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 321 GDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999999995 5555666666655
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=5e-43 Score=372.60 Aligned_cols=360 Identities=19% Similarity=0.226 Sum_probs=259.0
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhcC------CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEccc
Q 010649 108 DYVMQEISKAGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (505)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~------~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt 181 (505)
..+.+.+.+.--++||++|.++++.+.++ .+.++++|||||||++|++|++..+.. +.+++|++||
T Consensus 248 ~~~~~~~~~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~--------g~q~lilaPT 319 (681)
T PRK10917 248 GELLKKFLASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA--------GYQAALMAPT 319 (681)
T ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc--------CCeEEEEecc
Confidence 44555555443347999999999999876 379999999999999999999887754 7789999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEECCCCchHH---HHHHhc-CCcEEEeChHHHHHHHHccCCccCCccEEEEcCcch
Q 010649 182 RELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (505)
Q Consensus 182 ~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~ 257 (505)
++||.|+++.+++++...++++..++|+.+.... ...+.. .++|+|+||+.+.+ ...+.++++||+||+|+
T Consensus 320 ~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 320 EILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHR 394 (681)
T ss_pred HHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhh
Confidence 9999999999999998888999999999875433 334444 49999999987743 34578899999999999
Q ss_pred hhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHH
Q 010649 258 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL 337 (505)
Q Consensus 258 ~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 337 (505)
+.. ..+..+......+++++||||+.+....+.. ..+.....+.... .....+...+.... +...+.+.
T Consensus 395 fg~-----~qr~~l~~~~~~~~iL~~SATp~prtl~~~~--~g~~~~s~i~~~p-~~r~~i~~~~~~~~---~~~~~~~~ 463 (681)
T PRK10917 395 FGV-----EQRLALREKGENPHVLVMTATPIPRTLAMTA--YGDLDVSVIDELP-PGRKPITTVVIPDS---RRDEVYER 463 (681)
T ss_pred hhH-----HHHHHHHhcCCCCCEEEEeCCCCHHHHHHHH--cCCCceEEEecCC-CCCCCcEEEEeCcc---cHHHHHHH
Confidence 642 2233344445578999999998665443332 2222222222111 11222333322222 22233333
Q ss_pred HH-hhcCCCeEEEEeCCcc--------cHHHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Q 010649 338 LE-DIMDGSRILIFMDTKK--------GCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAAR 406 (505)
Q Consensus 338 l~-~~~~~~~vlVF~~~~~--------~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~ 406 (505)
+. ....+.+++|||+.++ .+..+++.|.+. ++++..+||+|++.+|+.++++|++|+++|||||+++++
T Consensus 464 i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~ 543 (681)
T PRK10917 464 IREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEV 543 (681)
T ss_pred HHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceee
Confidence 33 3345679999999654 455667777765 478999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEcCCCC-ChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHHhCCCCCHHHHHhhcCCCCCC
Q 010649 407 GLDVKDVKYVINYDFPG-SLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAMGRGAPPSS 485 (505)
Q Consensus 407 Gidi~~~~~Vi~~~~p~-s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~~~~~ 485 (505)
|+|+|++++||+++.|. ..+++.||+||+||.|..|.|++++..........-++.+++...-+.-.-.++.- ++.|
T Consensus 544 GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~~~dgf~iae~dl~~--rg~g 621 (681)
T PRK10917 544 GVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRETNDGFVIAEKDLEL--RGPG 621 (681)
T ss_pred CcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHHhcchHHHHHHhHhh--CCCc
Confidence 99999999999999986 57889999999999999999999996443334555566666544433322233332 4444
Q ss_pred CCCCCCcC
Q 010649 486 AGHGGFRD 493 (505)
Q Consensus 486 ~~~~~~~~ 493 (505)
.-.|..++
T Consensus 622 ~~~g~~q~ 629 (681)
T PRK10917 622 ELLGTRQS 629 (681)
T ss_pred cccCceec
Confidence 44444443
No 49
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.8e-46 Score=324.55 Aligned_cols=334 Identities=29% Similarity=0.522 Sum_probs=294.0
Q ss_pred CCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010649 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (505)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil 178 (505)
.-|.++-+.+++++++-.+||.+|...|.++||.+.-|-+++++|..|.|||.+|.++.++++..- .....+|++
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv-----~g~vsvlvm 116 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV-----DGQVSVLVM 116 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC-----CCeEEEEEE
Confidence 457788899999999999999999999999999999999999999999999999999988886542 235679999
Q ss_pred cccHHHHHHHHHHHHHhcCC-CCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcch
Q 010649 179 APTRELAVQIQQESTKFGAS-SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (505)
Q Consensus 179 ~Pt~~La~Q~~~~~~~~~~~-~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~ 257 (505)
|.|||||-|+..+..+|.+. ...++.+++||.+.......+.+-++|+|+||++++.+..++.+++++++.+|+||||.
T Consensus 117 chtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdk 196 (387)
T KOG0329|consen 117 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDK 196 (387)
T ss_pred eccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHH
Confidence 99999999999999988765 45899999999999888888888899999999999999999999999999999999998
Q ss_pred hhcC-CCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHH
Q 010649 258 MLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVK 336 (505)
Q Consensus 258 ~~~~-~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 336 (505)
|+.. .....+..|.+..+...|+++||||+++++....+.|+.+|..+.+........+.+.|++....+.+|...+.+
T Consensus 197 mle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~d 276 (387)
T KOG0329|consen 197 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLND 276 (387)
T ss_pred HHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhh
Confidence 8753 357788888888899999999999999999999999999999999888776777888899988999999999999
Q ss_pred HHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEE
Q 010649 337 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYV 416 (505)
Q Consensus 337 ~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~V 416 (505)
+|..+ +-.+++||+.+.... . | ..+ +|||+++++|+||..++.|
T Consensus 277 LLd~L-eFNQVvIFvKsv~Rl------------------------------~-f---~kr-~vat~lfgrgmdiervNi~ 320 (387)
T KOG0329|consen 277 LLDVL-EFNQVVIFVKSVQRL------------------------------S-F---QKR-LVATDLFGRGMDIERVNIV 320 (387)
T ss_pred hhhhh-hhcceeEeeehhhhh------------------------------h-h---hhh-hHHhhhhccccCcccceee
Confidence 88765 345899999886540 0 3 223 8999999999999999999
Q ss_pred EEcCCCCChhHHHHhhcccccCCCccEEEEEecCc-cHHHHHHHHHHHHHhCCCCCHH
Q 010649 417 INYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA-NARFAKELITILEEAGQKVSPE 473 (505)
Q Consensus 417 i~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~i~~~ 473 (505)
+|||+|.+..+|.||++||||.|..|.++.|++.. +..++..+.+..+-...++|++
T Consensus 321 ~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 321 FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred eccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 99999999999999999999999999999999865 5667777777776666677766
No 50
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=5.7e-43 Score=384.37 Aligned_cols=320 Identities=20% Similarity=0.198 Sum_probs=251.3
Q ss_pred CHHHHHHH-HHcCCCCCcHHHHHHHHHHhcC------CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 010649 107 PDYVMQEI-SKAGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (505)
Q Consensus 107 ~~~~~~~l-~~~~~~~~~~~Q~~~i~~~l~~------~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~ 179 (505)
+....+.+ ....| +||++|.++|+.++.+ +|++++++||+|||.+|+.+++..+.. +++++||+
T Consensus 586 ~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~--------g~qvlvLv 656 (1147)
T PRK10689 586 DREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN--------HKQVAVLV 656 (1147)
T ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc--------CCeEEEEe
Confidence 34444444 45566 8999999999999986 789999999999999999887766543 77899999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHh----cCCcEEEeChHHHHHHHHccCCccCCccEEEEcCc
Q 010649 180 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ----KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEA 255 (505)
Q Consensus 180 Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~----~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEa 255 (505)
||++||.|+++.+.+++...++++.+++++.+..++...+. ..++|+|+||+.+ . ....+.++++||+||+
T Consensus 657 PT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~-~~v~~~~L~lLVIDEa 731 (1147)
T PRK10689 657 PTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q-SDVKWKDLGLLIVDEE 731 (1147)
T ss_pred CcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h-CCCCHhhCCEEEEech
Confidence 99999999999999877777788888888877666554332 3589999999644 2 3456789999999999
Q ss_pred chhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHH
Q 010649 256 DRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLV 335 (505)
Q Consensus 256 h~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 335 (505)
|++. +. ....+..+++++|+++||||+.+....++...+.++..+...... ...+...+....... ...
T Consensus 732 hrfG---~~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~---r~~v~~~~~~~~~~~---~k~ 800 (1147)
T PRK10689 732 HRFG---VR--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR---RLAVKTFVREYDSLV---VRE 800 (1147)
T ss_pred hhcc---hh--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC---CCCceEEEEecCcHH---HHH
Confidence 9972 22 245567778899999999998887777777777777655432221 122333222222211 122
Q ss_pred HHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCC
Q 010649 336 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV 413 (505)
Q Consensus 336 ~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~ 413 (505)
.++.+...+++++|||++++.++.+++.|++. +.++..+||+|++.+|..++++|++|+++|||||+++++|||+|++
T Consensus 801 ~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v 880 (1147)
T PRK10689 801 AILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTA 880 (1147)
T ss_pred HHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccC
Confidence 33444445679999999999999999999886 7889999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCC-CChhHHHHhhcccccCCCccEEEEEecCc
Q 010649 414 KYVINYDFP-GSLEDYVHRIGRTGRAGAKGTAYTFFTAA 451 (505)
Q Consensus 414 ~~Vi~~~~p-~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 451 (505)
++||..+.+ .+..+|+||+||+||.|+.|.|++++...
T Consensus 881 ~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 881 NTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred CEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 999965443 35678999999999999999999888654
No 51
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2.5e-42 Score=365.02 Aligned_cols=358 Identities=19% Similarity=0.238 Sum_probs=255.7
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHhcC------CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHH
Q 010649 110 VMQEISKAGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 183 (505)
Q Consensus 110 ~~~~l~~~~~~~~~~~Q~~~i~~~l~~------~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~ 183 (505)
+.+.+...+| +||++|.++++.++++ .+.++++|||||||++|++|++..+.. +.+++|++||++
T Consensus 225 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~--------g~qvlilaPT~~ 295 (630)
T TIGR00643 225 LTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA--------GYQVALMAPTEI 295 (630)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc--------CCcEEEECCHHH
Confidence 3445556677 8999999999999875 258999999999999999999887764 678999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEECCCCchHH---HHHHh-cCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhh
Q 010649 184 LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (505)
Q Consensus 184 La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~ 259 (505)
||.|+++.+.+++...++++..++|+...... ...+. ..++|+|+||+.+.+ ...+.++++||+||+|++.
T Consensus 296 LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg 370 (630)
T TIGR00643 296 LAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFG 370 (630)
T ss_pred HHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhcc
Confidence 99999999999988888999999999876543 33333 347999999987743 3457889999999999964
Q ss_pred cCCCHHHHHHHHHhcC--CCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHH
Q 010649 260 DMGFEPQIKKILSQIR--PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL 337 (505)
Q Consensus 260 ~~~~~~~~~~il~~~~--~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 337 (505)
.. +...+..... ..+++++||||+.+....+.. ..+.....+.... .....+...+. ....+ ..+...
T Consensus 371 ~~----qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~--~~~l~~~~i~~~p-~~r~~i~~~~~--~~~~~-~~~~~~ 440 (630)
T TIGR00643 371 VE----QRKKLREKGQGGFTPHVLVMSATPIPRTLALTV--YGDLDTSIIDELP-PGRKPITTVLI--KHDEK-DIVYEF 440 (630)
T ss_pred HH----HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHh--cCCcceeeeccCC-CCCCceEEEEe--CcchH-HHHHHH
Confidence 32 2223333332 268999999997654433322 1111111111111 11122222222 22222 334444
Q ss_pred HHh-hcCCCeEEEEeCCcc--------cHHHHHHHHHh--CCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Q 010649 338 LED-IMDGSRILIFMDTKK--------GCDQITRQLRM--DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAAR 406 (505)
Q Consensus 338 l~~-~~~~~~vlVF~~~~~--------~~~~l~~~L~~--~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~ 406 (505)
+.+ ...+.+++|||+..+ .++.+++.|.+ .++.+..+||+|++.+|..++++|++|+.+|||||+++++
T Consensus 441 i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~ 520 (630)
T TIGR00643 441 IEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEV 520 (630)
T ss_pred HHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeec
Confidence 433 345678999998764 45567777765 3678999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEcCCCC-ChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHHhCCCCCHHHHHhhcCCCCCC
Q 010649 407 GLDVKDVKYVINYDFPG-SLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAMGRGAPPSS 485 (505)
Q Consensus 407 Gidi~~~~~Vi~~~~p~-s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~~~~~ 485 (505)
|||+|++++||+++.|. +.++|.||+||+||.|..|.|++++...........++.+.+...-+.-.-.+|.- ++.|
T Consensus 521 GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~~rl~~~~~~~dgf~iae~dl~~--Rg~g 598 (630)
T TIGR00643 521 GVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKRLRVMADTLDGFVIAEEDLEL--RGPG 598 (630)
T ss_pred CcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCCCCHHHHHHHHHHHhhcccHHHHHHHHhc--CCCc
Confidence 99999999999999986 68899999999999999999999994333334444456666655444333344443 4444
Q ss_pred CCCCCCcC
Q 010649 486 AGHGGFRD 493 (505)
Q Consensus 486 ~~~~~~~~ 493 (505)
.-.|-.++
T Consensus 599 ~~~g~~Qs 606 (630)
T TIGR00643 599 DLLGTKQS 606 (630)
T ss_pred ccCCCccc
Confidence 44443433
No 52
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.5e-41 Score=323.95 Aligned_cols=324 Identities=26% Similarity=0.296 Sum_probs=248.7
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 010649 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (505)
Q Consensus 119 ~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~ 198 (505)
..+++.||......++.+ |++++.|||.|||+++++-+...+.+.+ + ++|+++||+-|+.|..+.|.++..-
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~------~-kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG------G-KVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC------C-eEEEecCCchHHHHHHHHHHHHhCC
Confidence 347899999999888875 9999999999999999987777777642 3 8999999999999999999999888
Q ss_pred CCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCC
Q 010649 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 278 (505)
Q Consensus 199 ~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~ 278 (505)
..-.++.++|.....+....+.+ .+|+|+||+.+.+.+..+..++.++.++|||||||-....-...+.+......+++
T Consensus 85 p~~~i~~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~ 163 (542)
T COG1111 85 PEDEIAALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNP 163 (542)
T ss_pred ChhheeeecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCc
Confidence 77888999998877665555544 69999999999999999999999999999999999765543445555445556788
Q ss_pred ceEEecCCChHHHHHH---HHHHccCCcEEE-------------------------------------------------
Q 010649 279 QTLYWSATWPKEVEHL---ARQYLYNPYKVI------------------------------------------------- 306 (505)
Q Consensus 279 ~~v~~SAT~~~~~~~~---~~~~~~~~~~~~------------------------------------------------- 306 (505)
.++++|||+..+.+.+ +..+....+.+.
T Consensus 164 ~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g 243 (542)
T COG1111 164 LILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELG 243 (542)
T ss_pred eEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999954322211 111110000000
Q ss_pred ---EcCC----Ccc----------cc--cc----------------------------eeee------------------
Q 010649 307 ---IGSP----DLK----------AN--HA----------------------------IRQH------------------ 321 (505)
Q Consensus 307 ---~~~~----~~~----------~~--~~----------------------------~~~~------------------ 321 (505)
...+ ++. .. .. ..++
T Consensus 244 ~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~ 323 (542)
T COG1111 244 VIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKS 323 (542)
T ss_pred ceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHH
Confidence 0000 000 00 00 0000
Q ss_pred -----------------eeccChhHHHHHHHHHHHhhc---CCCeEEEEeCCcccHHHHHHHHHhCCCCeE--EE-----
Q 010649 322 -----------------VDIVSESQKYNKLVKLLEDIM---DGSRILIFMDTKKGCDQITRQLRMDGWPAL--SI----- 374 (505)
Q Consensus 322 -----------------~~~~~~~~k~~~l~~~l~~~~---~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~--~l----- 374 (505)
....-+.+|+..+.+++++.. ++.++|||++.+++|+.+.++|.+.+..+. ++
T Consensus 324 l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r 403 (542)
T COG1111 324 LLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASR 403 (542)
T ss_pred HhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecccc
Confidence 000012355666666676654 345999999999999999999999887774 33
Q ss_pred --cCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCcc
Q 010649 375 --HGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAAN 452 (505)
Q Consensus 375 --hg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 452 (505)
..+|+|.++.+++++|++|+++|||||+++++|+|||++++||+|++..|+..++||.||+||. +.|.++++++++.
T Consensus 404 ~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gt 482 (542)
T COG1111 404 EGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGT 482 (542)
T ss_pred ccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCc
Confidence 2479999999999999999999999999999999999999999999999999999999999998 8999999999983
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2e-41 Score=373.67 Aligned_cols=295 Identities=23% Similarity=0.291 Sum_probs=223.0
Q ss_pred EEccCCCchHHHHHHHHHHHHhcCCCC-----CCCCCCEEEEEcccHHHHHHHHHHHHHhc------------CCCCceE
Q 010649 141 GIAETGSGKTLAYLLPAIVHVNAQPFL-----APGDGPIVLVLAPTRELAVQIQQESTKFG------------ASSKIKS 203 (505)
Q Consensus 141 i~a~TGsGKT~~~~~~~l~~l~~~~~~-----~~~~~~~vlil~Pt~~La~Q~~~~~~~~~------------~~~~i~~ 203 (505)
|+||||||||++|++|++..+...+.. ....+.++|||+|+++|++|+.+.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999998764311 12246889999999999999999886421 1246889
Q ss_pred EEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHcc-CCccCCccEEEEcCcchhhcCCCHH----HHHHHHHhcCCCC
Q 010649 204 TCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLDEADRMLDMGFEP----QIKKILSQIRPDR 278 (505)
Q Consensus 204 ~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~-~~~l~~~~~lVlDEah~~~~~~~~~----~~~~il~~~~~~~ 278 (505)
...+|+.+..++...+.+.++|+|+||++|..++.++ ...++++++|||||+|.+.+..++. .++.+...+..+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999888777777778999999999998887654 3468999999999999999765444 4445555556788
Q ss_pred ceEEecCCChHHHHHHHHHHccC-CcEEEEcCCCcccccceeeeeeccCh------------------h-HHH-HHHHHH
Q 010649 279 QTLYWSATWPKEVEHLARQYLYN-PYKVIIGSPDLKANHAIRQHVDIVSE------------------S-QKY-NKLVKL 337 (505)
Q Consensus 279 ~~v~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~-~k~-~~l~~~ 337 (505)
|+|++|||+++ .+++++.+... +..+. .... .....+...+...+. . ... .....+
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~Iv-~~~~-~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTVV-NPPA-MRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEEE-CCCC-CcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 99999999987 45666544333 43332 2221 111122211111000 0 000 111234
Q ss_pred HHhhcCCCeEEEEeCCcccHHHHHHHHHhCC---------------------------------CCeEEEcCCCCHHHHH
Q 010649 338 LEDIMDGSRILIFMDTKKGCDQITRQLRMDG---------------------------------WPALSIHGDKSQAERD 384 (505)
Q Consensus 338 l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~---------------------------------~~~~~lhg~~~~~~r~ 384 (505)
+.......++||||||++.|+.++..|++.. +.+..+||++++++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 4444456789999999999999999997631 1256899999999999
Q ss_pred HHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccC
Q 010649 385 WVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA 438 (505)
Q Consensus 385 ~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~ 438 (505)
.+++.|++|++++||||++++.||||+++++||+++.|.+..+|+||+||+||.
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 999999999999999999999999999999999999999999999999999996
No 54
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.4e-41 Score=341.76 Aligned_cols=326 Identities=25% Similarity=0.375 Sum_probs=257.8
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 117 ~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
.|+..++|-|.++|..+++++|+++..|||.||+++|.+|++-. . | .+|||+|..+|...+.+.+...+
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~--~--------G-~TLVVSPLiSLM~DQV~~l~~~G 81 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL--E--------G-LTLVVSPLISLMKDQVDQLEAAG 81 (590)
T ss_pred hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc--C--------C-CEEEECchHHHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999865 1 3 49999999999999889888876
Q ss_pred CCCCceEEEEECCCCchHHH---HHHhc-CCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCC--CHHHHHHH
Q 010649 197 ASSKIKSTCIYGGVPKGPQV---RDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG--FEPQIKKI 270 (505)
Q Consensus 197 ~~~~i~~~~~~gg~~~~~~~---~~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~--~~~~~~~i 270 (505)
+.+..+.+..+..+.. ..+.. ..++++.+||+|..--......-.++.++||||||+++++| |.+.+..+
T Consensus 82 ----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~l 157 (590)
T COG0514 82 ----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRL 157 (590)
T ss_pred ----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHH
Confidence 6777777665544432 22333 37999999999854222112224567899999999999997 99888876
Q ss_pred HHhcC--CCCceEEecCCChHHHHHHHHHHccCCc-EEEEcCCCcccccceeeeeecc-ChhHHHHHHHHHHHhhcCCCe
Q 010649 271 LSQIR--PDRQTLYWSATWPKEVEHLARQYLYNPY-KVIIGSPDLKANHAIRQHVDIV-SESQKYNKLVKLLEDIMDGSR 346 (505)
Q Consensus 271 l~~~~--~~~~~v~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~~~~ 346 (505)
-.... ++..++.+|||.++.+...+...+.... .+...+.+ ..++...+... +...+...+.+ ........
T Consensus 158 g~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfd---RpNi~~~v~~~~~~~~q~~fi~~--~~~~~~~~ 232 (590)
T COG0514 158 GRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFD---RPNLALKVVEKGEPSDQLAFLAT--VLPQLSKS 232 (590)
T ss_pred HHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCC---CchhhhhhhhcccHHHHHHHHHh--hccccCCC
Confidence 44332 4889999999999888877766554433 33333322 22222222222 22333332222 11334457
Q ss_pred EEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCCChh
Q 010649 347 ILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLE 426 (505)
Q Consensus 347 vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~ 426 (505)
.||||.|++.++.+++.|...|+.+..+|++|+.++|..+.++|..++++|+|||.+++.|||-|++++||||++|.|++
T Consensus 233 GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~E 312 (590)
T COG0514 233 GIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIE 312 (590)
T ss_pred eEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccCCCccEEEEEecCccHHHHHHHHHH
Q 010649 427 DYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITI 462 (505)
Q Consensus 427 ~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~ 462 (505)
.|.|-+|||||.|....|++++.+.|......+++.
T Consensus 313 sYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 313 SYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred HHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 999999999999999999999999998776666654
No 55
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=4.6e-41 Score=350.24 Aligned_cols=310 Identities=18% Similarity=0.224 Sum_probs=231.7
Q ss_pred HHHHHHHHHHhcCCcEEEEccCCCchHHH---------HHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 010649 124 PIQAQGWPMALKGRDLIGIAETGSGKTLA---------YLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (505)
Q Consensus 124 ~~Q~~~i~~~l~~~~~li~a~TGsGKT~~---------~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~ 194 (505)
.+|+++++.+++++++|++|+||||||.+ |++|.+..+.... .....++++|++||++||.|+...+.+
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 47999999999999999999999999987 3344454443210 122356899999999999999999887
Q ss_pred hcCC---CCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHH
Q 010649 195 FGAS---SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKIL 271 (505)
Q Consensus 195 ~~~~---~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il 271 (505)
.... .+..+.+.+|+... .......+..+|+|+|++.. ...++++++|||||||.+..++ ..+..++
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--DllL~ll 314 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVA 314 (675)
T ss_pred HhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHHHHHH
Confidence 5433 35667888999863 22222334679999997521 2347889999999999987764 4455555
Q ss_pred HhcC-CCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccC----------hhHHHHHHHHHHHh
Q 010649 272 SQIR-PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS----------ESQKYNKLVKLLED 340 (505)
Q Consensus 272 ~~~~-~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~k~~~l~~~l~~ 340 (505)
.... ..+|+++||||++.+++.+ ..++.++..+.+... ....+.+.+.... ...+. .+...+..
T Consensus 315 k~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr---t~~pV~~~yi~~~~~~~~~~~y~~~~k~-~~l~~L~~ 389 (675)
T PHA02653 315 RKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG---TLFPISEVYVKNKYNPKNKRAYIEEEKK-NIVTALKK 389 (675)
T ss_pred HHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC---cCCCeEEEEeecCcccccchhhhHHHHH-HHHHHHHH
Confidence 4443 3459999999999888877 578888877766432 1233333332111 11222 23333333
Q ss_pred hc--CCCeEEEEeCCcccHHHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHHH-hcCCCcEEEEcccccccCCCCCCCE
Q 010649 341 IM--DGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEF-KAGKSPIMTATDVAARGLDVKDVKY 415 (505)
Q Consensus 341 ~~--~~~~vlVF~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f-~~g~~~vLVaT~~~~~Gidi~~~~~ 415 (505)
.. ..+++||||+++.+++.+++.|++. ++.+..+||++++. ++++++| ++|+.+|||||+++++|||||+|++
T Consensus 390 ~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~ 467 (675)
T PHA02653 390 YTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATH 467 (675)
T ss_pred hhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeE
Confidence 22 3458999999999999999999876 68999999999975 5677777 7899999999999999999999999
Q ss_pred EEEcC---CCC---------ChhHHHHhhcccccCCCccEEEEEecCccH
Q 010649 416 VINYD---FPG---------SLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (505)
Q Consensus 416 Vi~~~---~p~---------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 453 (505)
||+++ .|. |.++|+||+||+||. ++|.|+.|+++.+.
T Consensus 468 VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 468 VYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred EEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 99998 554 788999999999999 89999999998764
No 56
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=8.9e-41 Score=344.79 Aligned_cols=345 Identities=16% Similarity=0.193 Sum_probs=240.6
Q ss_pred HHHHHHHHHhcCceeecCCCCCCCCCCcCC---CCCHHHHHHHHHcC--CCCCcHHHHHHHHHHhcCCcEEEEccCCCch
Q 010649 75 EREVEEYRQQREITVEGRDVPKPVKSFRDV---GFPDYVMQEISKAG--FFEPTPIQAQGWPMALKGRDLIGIAETGSGK 149 (505)
Q Consensus 75 ~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~---~l~~~~~~~l~~~~--~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGK 149 (505)
...+..+.++..+...- +.+....+.+ .+...+.......+ ...|+++|.++++.++.+++.++++|||+||
T Consensus 66 ~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~r~~Q~~av~~~l~~~~~il~apTGsGK 142 (501)
T PHA02558 66 VGQLKKFAKNRGYSIWV---DPRIEENEDISREDFDEWVSSLEIYSGNKKIEPHWYQYDAVYEGLKNNRRLLNLPTSAGK 142 (501)
T ss_pred HHHHHHHHHhcCCeEec---CcccccCCCCCHHHHHhHhhhcccccCCCcCCCCHHHHHHHHHHHhcCceEEEeCCCCCH
Confidence 55666777776665432 2222222211 12223332222222 4589999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeC
Q 010649 150 TLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIAT 229 (505)
Q Consensus 150 T~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T 229 (505)
|+++.. +...+... ...++|||+||++|+.||.+.+.+++......+..+.+|.... ...+|+|+|
T Consensus 143 T~i~~~-l~~~~~~~------~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT 208 (501)
T PHA02558 143 SLIQYL-LSRYYLEN------YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------TDAPIVVST 208 (501)
T ss_pred HHHHHH-HHHHHHhc------CCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-------CCCCEEEee
Confidence 997654 22222221 1337999999999999999999998765555566677765442 347999999
Q ss_pred hHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHH-HHccCCcEEEEc
Q 010649 230 PGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLAR-QYLYNPYKVIIG 308 (505)
Q Consensus 230 ~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~-~~~~~~~~~~~~ 308 (505)
|+++.+... ..+.++++||+||||++.. ..+..++..+++.+++++||||++........ ..+..|+...+.
T Consensus 209 ~qsl~~~~~---~~~~~~~~iIvDEaH~~~~----~~~~~il~~~~~~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~ 281 (501)
T PHA02558 209 WQSAVKQPK---EWFDQFGMVIVDECHLFTG----KSLTSIITKLDNCKFKFGLTGSLRDGKANILQYVGLFGDIFKPVT 281 (501)
T ss_pred HHHHhhchh---hhccccCEEEEEchhcccc----hhHHHHHHhhhccceEEEEeccCCCccccHHHHHHhhCCceEEec
Confidence 999876432 2467899999999999875 34567777777788999999998653221110 001111111111
Q ss_pred C---------------------CCcccc----cceeeee-eccChhHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHH
Q 010649 309 S---------------------PDLKAN----HAIRQHV-DIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQIT 361 (505)
Q Consensus 309 ~---------------------~~~~~~----~~~~~~~-~~~~~~~k~~~l~~~l~~~~-~~~~vlVF~~~~~~~~~l~ 361 (505)
. ...... ....+.+ .......+...+.+++.... .+.++||||++.++++.|+
T Consensus 282 ~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~ 361 (501)
T PHA02558 282 TSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLY 361 (501)
T ss_pred HHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHH
Confidence 0 000000 0000000 11223334444555554433 3468999999999999999
Q ss_pred HHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc-ccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCC
Q 010649 362 RQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGA 440 (505)
Q Consensus 362 ~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT-~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~ 440 (505)
+.|++.+.++..+||++++++|..+++.|++++..||||| +++++|+|+|++++||+++++.|...|+||+||++|.+.
T Consensus 362 ~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~ 441 (501)
T PHA02558 362 EMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHG 441 (501)
T ss_pred HHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCC
Confidence 9999999999999999999999999999999999999998 999999999999999999999999999999999999876
Q ss_pred ccE
Q 010649 441 KGT 443 (505)
Q Consensus 441 ~g~ 443 (505)
.+.
T Consensus 442 ~K~ 444 (501)
T PHA02558 442 SKS 444 (501)
T ss_pred CCc
Confidence 543
No 57
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=6.7e-40 Score=360.94 Aligned_cols=303 Identities=22% Similarity=0.278 Sum_probs=239.0
Q ss_pred HHHHHc-CCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHH
Q 010649 112 QEISKA-GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQ 190 (505)
Q Consensus 112 ~~l~~~-~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~ 190 (505)
+.+++. |+ .|+++|.++++.++.|++++++||||+|||. |.++++..+.. .++++|||+||++|+.|+.+
T Consensus 71 ~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-------~g~~alIL~PTreLa~Qi~~ 141 (1176)
T PRK09401 71 KFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-------KGKKSYIIFPTRLLVEQVVE 141 (1176)
T ss_pred HHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeccHHHHHHHHH
Confidence 344443 55 8999999999999999999999999999996 45555555433 27789999999999999999
Q ss_pred HHHHhcCCCCceEEEEECCCCc-----hHHHHHHh-cCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhc----
Q 010649 191 ESTKFGASSKIKSTCIYGGVPK-----GPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD---- 260 (505)
Q Consensus 191 ~~~~~~~~~~i~~~~~~gg~~~-----~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~---- 260 (505)
.+++++...++.+..++++... ..+...+. ..++|+|+||++|.+++. .+...++++||+||||++++
T Consensus 142 ~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~ 219 (1176)
T PRK09401 142 KLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKN 219 (1176)
T ss_pred HHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccc
Confidence 9999998888888777776542 22333444 358999999999998876 34556799999999999986
Q ss_pred -------CCCH-HHHHHHHHhcCC------------------------CCceEEecCCChHH-HHHHHHHHccCCcEEEE
Q 010649 261 -------MGFE-PQIKKILSQIRP------------------------DRQTLYWSATWPKE-VEHLARQYLYNPYKVII 307 (505)
Q Consensus 261 -------~~~~-~~~~~il~~~~~------------------------~~~~v~~SAT~~~~-~~~~~~~~~~~~~~~~~ 307 (505)
++|. ..+..++..++. ..|++++|||+++. +.. .++.++..+.+
T Consensus 220 id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v 296 (1176)
T PRK09401 220 IDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEV 296 (1176)
T ss_pred hhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEe
Confidence 6774 677777776654 68999999999764 332 22334444555
Q ss_pred cCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCccc---HHHHHHHHHhCCCCeEEEcCCCCHHHHH
Q 010649 308 GSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKG---CDQITRQLRMDGWPALSIHGDKSQAERD 384 (505)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~---~~~l~~~L~~~~~~~~~lhg~~~~~~r~ 384 (505)
+... ....++.+.+..+. .+...+..++.... .++||||+++.. |+.+++.|+..|+++..+||+| .
T Consensus 297 ~~~~-~~~rnI~~~yi~~~--~k~~~L~~ll~~l~--~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~ 366 (1176)
T PRK09401 297 GSPV-FYLRNIVDSYIVDE--DSVEKLVELVKRLG--DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----E 366 (1176)
T ss_pred cCcc-cccCCceEEEEEcc--cHHHHHHHHHHhcC--CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----H
Confidence 5543 23345666555444 56777888876653 479999999888 9999999999999999999999 2
Q ss_pred HHHHHHhcCCCcEEEE----cccccccCCCCC-CCEEEEcCCCC------ChhHHHHhhcccccC
Q 010649 385 WVLSEFKAGKSPIMTA----TDVAARGLDVKD-VKYVINYDFPG------SLEDYVHRIGRTGRA 438 (505)
Q Consensus 385 ~~~~~f~~g~~~vLVa----T~~~~~Gidi~~-~~~Vi~~~~p~------s~~~~~Qr~GR~~R~ 438 (505)
..+++|++|+++|||| |++++||||+|+ +++||||+.|. ....+.||+||+...
T Consensus 367 ~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 367 RKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred HHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 3459999999999999 699999999999 89999999998 678899999999743
No 58
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.2e-39 Score=347.61 Aligned_cols=305 Identities=20% Similarity=0.267 Sum_probs=234.8
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH-hcCCCCceE
Q 010649 125 IQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASSKIKS 203 (505)
Q Consensus 125 ~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~-~~~~~~i~~ 203 (505)
+-.+.+..+.+++++|++|+||||||+++.++++..... +++++|+.|+|++|.|+++.+.+ ++...+..+
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~--------~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~V 77 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI--------GGKIIMLEPRRLAARSAAQRLASQLGEAVGQTV 77 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc--------CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEE
Confidence 344566667788999999999999999999998877522 46799999999999999998864 444445555
Q ss_pred EEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcc-hhhcCCCHHH-HHHHHHhcCCCCceE
Q 010649 204 TCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD-RMLDMGFEPQ-IKKILSQIRPDRQTL 281 (505)
Q Consensus 204 ~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah-~~~~~~~~~~-~~~il~~~~~~~~~v 281 (505)
...+.+.. ......+|+|+|+++|.+++.. ...++++++|||||+| ++++.++... +..+...++++.|+|
T Consensus 78 Gy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlI 150 (819)
T TIGR01970 78 GYRVRGEN------KVSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKIL 150 (819)
T ss_pred EEEEcccc------ccCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEE
Confidence 55444432 1234578999999999999876 4578999999999999 5777766543 345666678899999
Q ss_pred EecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHH-----HHHHHHHHhhcCCCeEEEEeCCccc
Q 010649 282 YWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKY-----NKLVKLLEDIMDGSRILIFMDTKKG 356 (505)
Q Consensus 282 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~l~~~l~~~~~~~~vlVF~~~~~~ 356 (505)
+||||++... ...++.++..+.+... ...+.+.+.......+. ..+..++.. ..+.+||||+++.+
T Consensus 151 lmSATl~~~~---l~~~l~~~~vI~~~gr----~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~e 221 (819)
T TIGR01970 151 AMSATLDGER---LSSLLPDAPVVESEGR----SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGSILVFLPGQAE 221 (819)
T ss_pred EEeCCCCHHH---HHHHcCCCcEEEecCc----ceeeeeEEeecchhhhHHHHHHHHHHHHHHh--cCCcEEEEECCHHH
Confidence 9999998754 3456655544443221 12234444333333332 223333332 34689999999999
Q ss_pred HHHHHHHHHh---CCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCC----------
Q 010649 357 CDQITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPG---------- 423 (505)
Q Consensus 357 ~~~l~~~L~~---~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~---------- 423 (505)
++.+++.|++ .++.+..+||+|++++|..+++.|++|+.+|||||+++++|||||+|++||+++.|.
T Consensus 222 I~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~ 301 (819)
T TIGR01970 222 IRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGI 301 (819)
T ss_pred HHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCC
Confidence 9999999987 478899999999999999999999999999999999999999999999999999875
Q ss_pred --------ChhHHHHhhcccccCCCccEEEEEecCccHH
Q 010649 424 --------SLEDYVHRIGRTGRAGAKGTAYTFFTAANAR 454 (505)
Q Consensus 424 --------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~ 454 (505)
|.++|.||.||+||. +.|.||.++++.+..
T Consensus 302 ~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 302 TRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred ceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 345699999999999 899999999986543
No 59
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.5e-39 Score=333.63 Aligned_cols=317 Identities=21% Similarity=0.257 Sum_probs=249.7
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 010649 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~ 199 (505)
..|+|+|..+++.+++|+ |+.+.||+|||++|++|++.+... ++.++||+||++||.|.++++..+....
T Consensus 102 ~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~--------G~~v~VvTptreLA~qdae~~~~l~~~l 171 (656)
T PRK12898 102 QRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA--------GLPVHVITVNDYLAERDAELMRPLYEAL 171 (656)
T ss_pred CCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc--------CCeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 379999999999999998 999999999999999999988664 7789999999999999999999999999
Q ss_pred CceEEEEECCCCchHHHHHHhcCCcEEEeChHHH-HHHHHcc-------------------------CCccCCccEEEEc
Q 010649 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH-------------------------NTNLRRVTYLVLD 253 (505)
Q Consensus 200 ~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~-------------------------~~~l~~~~~lVlD 253 (505)
++++.+++|+.+. +.+....+++|+++|...| .++|... ......+.+.|||
T Consensus 172 Glsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvD 249 (656)
T PRK12898 172 GLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVD 249 (656)
T ss_pred CCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEee
Confidence 9999999999753 4555567899999999876 3444321 1123567899999
Q ss_pred Ccchhh-cC-----------------CCHHHHHHHHHhc-----------------------------------------
Q 010649 254 EADRML-DM-----------------GFEPQIKKILSQI----------------------------------------- 274 (505)
Q Consensus 254 Eah~~~-~~-----------------~~~~~~~~il~~~----------------------------------------- 274 (505)
|+|.++ |. .+......++..+
T Consensus 250 EvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~ 329 (656)
T PRK12898 250 EADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVR 329 (656)
T ss_pred cccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchH
Confidence 999654 00 0000000100000
Q ss_pred ---------------CC-------------------------------------------------------------CC
Q 010649 275 ---------------RP-------------------------------------------------------------DR 278 (505)
Q Consensus 275 ---------------~~-------------------------------------------------------------~~ 278 (505)
.. -.
T Consensus 330 ~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~ 409 (656)
T PRK12898 330 REELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYL 409 (656)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhH
Confidence 00 02
Q ss_pred ceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhhc-CCCeEEEEeCCcccH
Q 010649 279 QTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGC 357 (505)
Q Consensus 279 ~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~vlVF~~~~~~~ 357 (505)
++.+||||.+....++.+.|..++..+....+. .....+.+..++...|...|.+.+.... .+.++||||+|++.+
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~---~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~s 486 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS---QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAAS 486 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc---cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHH
Confidence 567899999988888888888887665444433 2223344556677889999999988754 346899999999999
Q ss_pred HHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCC---CCC-----EEEEcCCCCChhHHH
Q 010649 358 DQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK---DVK-----YVINYDFPGSLEDYV 429 (505)
Q Consensus 358 ~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~---~~~-----~Vi~~~~p~s~~~~~ 429 (505)
+.++..|.+.++++..+||++++ |+..+..|..++..|+|||++++||+||+ +|. +||++++|.|...|.
T Consensus 487 e~L~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~ 564 (656)
T PRK12898 487 ERLSALLREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDR 564 (656)
T ss_pred HHHHHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHH
Confidence 99999999999999999998654 45555556666667999999999999999 666 999999999999999
Q ss_pred HhhcccccCCCccEEEEEecCccH
Q 010649 430 HRIGRTGRAGAKGTAYTFFTAANA 453 (505)
Q Consensus 430 Qr~GR~~R~g~~g~~~~~~~~~~~ 453 (505)
||+||+||.|.+|.++.|++..|.
T Consensus 565 hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 565 QLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred HhcccccCCCCCeEEEEEechhHH
Confidence 999999999999999999998663
No 60
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=7e-41 Score=323.87 Aligned_cols=372 Identities=21% Similarity=0.311 Sum_probs=289.1
Q ss_pred cccccccCccccCCCHHHHHHHHHhcCceeecCCCCCCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCc
Q 010649 60 EKNFYVESPSVAAMSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALKGRD 138 (505)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-~l~~~~ 138 (505)
+|..+..+|.+....+.|+ .++++++.+...+ +-...+++.+|+.+...++..|+.++.|+|.-++.. ++.|+|
T Consensus 160 Dkvl~ml~p~fdP~~~pE~---TryD~v~a~~~~~--~r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~n 234 (830)
T COG1202 160 DKVLEMLDPRFDPLEDPEL---TRYDEVTAETDEV--ERVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGEN 234 (830)
T ss_pred HHHHHHhCccCCcccCccc---ccceeeecccccc--ccccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCc
Confidence 3444444444444333333 2334444333322 224467888999999999999999999999999987 679999
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHH--
Q 010649 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV-- 216 (505)
Q Consensus 139 ~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~-- 216 (505)
.+++.+|+||||++..++-+..++.. +.+.|+|+|..+||+|.+++|++-....++++..-.|..-.....
T Consensus 235 llVVSaTasGKTLIgElAGi~~~l~~-------g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~p 307 (830)
T COG1202 235 LLVVSATASGKTLIGELAGIPRLLSG-------GKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEP 307 (830)
T ss_pred eEEEeccCCCcchHHHhhCcHHHHhC-------CCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCc
Confidence 99999999999999999999888763 788999999999999999999987777888887777654332221
Q ss_pred --HHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhc---CCCCceEEecCCChHHH
Q 010649 217 --RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI---RPDRQTLYWSATWPKEV 291 (505)
Q Consensus 217 --~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~---~~~~~~v~~SAT~~~~~ 291 (505)
......+||||+||+-+-.++... ..+.++..||+||+|.+.+...++.+.-++..+ -+..|+|.+|||..+ -
T Consensus 308 v~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgN-p 385 (830)
T COG1202 308 VVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGN-P 385 (830)
T ss_pred cccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCC-h
Confidence 122345899999999997777665 678999999999999999877777777665554 478999999999876 5
Q ss_pred HHHHHHHccCCcEEEEcCCCcccccceeeeeecc-ChhHHHHHHHHHHHhhcC-------CCeEEEEeCCcccHHHHHHH
Q 010649 292 EHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIV-SESQKYNKLVKLLEDIMD-------GSRILIFMDTKKGCDQITRQ 363 (505)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~-------~~~vlVF~~~~~~~~~l~~~ 363 (505)
+++++.+....+... ..+..+...+.++ ++.+|...+..+.+.-.. .+++|||++|++.|+.|+..
T Consensus 386 ~elA~~l~a~lV~y~------~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~ 459 (830)
T COG1202 386 EELAKKLGAKLVLYD------ERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADA 459 (830)
T ss_pred HHHHHHhCCeeEeec------CCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHH
Confidence 667777766555432 2233344444444 478888888888765321 34899999999999999999
Q ss_pred HHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEE---cCC-CCChhHHHHhhcccccCC
Q 010649 364 LRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN---YDF-PGSLEDYVHRIGRTGRAG 439 (505)
Q Consensus 364 L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~---~~~-p~s~~~~~Qr~GR~~R~g 439 (505)
|...|+++..+|++++..+|..+...|.++++.++|+|.+++.|+|+|.-.+|+. .+. +-|+.+|.||.|||||.+
T Consensus 460 L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~ 539 (830)
T COG1202 460 LTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPD 539 (830)
T ss_pred hhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCC
Confidence 9999999999999999999999999999999999999999999999997665542 122 348999999999999987
Q ss_pred C--ccEEEEEecCc
Q 010649 440 A--KGTAYTFFTAA 451 (505)
Q Consensus 440 ~--~g~~~~~~~~~ 451 (505)
- .|.+|+++.+.
T Consensus 540 yHdrGkVyllvepg 553 (830)
T COG1202 540 YHDRGKVYLLVEPG 553 (830)
T ss_pred cccCceEEEEecCC
Confidence 5 48999988764
No 61
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=4.8e-40 Score=347.09 Aligned_cols=336 Identities=22% Similarity=0.285 Sum_probs=262.6
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccH
Q 010649 104 VGFPDYVMQEISKAGFFEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (505)
Q Consensus 104 ~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l-~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~ 182 (505)
..+++.+.+.++..++.++.|.|+.++...+ +++|+|+++|||||||+++++.++..+.+. +.++++|||++
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-------~~k~vYivPlk 86 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-------GGKVVYIVPLK 86 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------CCcEEEEeChH
Confidence 3477788888888888899999999987755 459999999999999999999999998873 56799999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCC
Q 010649 183 ELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG 262 (505)
Q Consensus 183 ~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~ 262 (505)
+||+|.++++.+ ....+++|...+|+...... ...+++|+|+|||++-..+.+....+..+++||+||+|.+.+..
T Consensus 87 ALa~Ek~~~~~~-~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~ 162 (766)
T COG1204 87 ALAEEKYEEFSR-LEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRT 162 (766)
T ss_pred HHHHHHHHHhhh-HHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcc
Confidence 999999999993 35667999999999876542 23468999999999977777766677899999999999999987
Q ss_pred CHHHHHHHHHhcC---CCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhH-------HHH
Q 010649 263 FEPQIKKILSQIR---PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQ-------KYN 332 (505)
Q Consensus 263 ~~~~~~~il~~~~---~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------k~~ 332 (505)
.++.++.++...+ ...|++++|||+|+ ..+++.+...++.........+.......+.+....... ...
T Consensus 163 RG~~lE~iv~r~~~~~~~~rivgLSATlpN-~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~ 241 (766)
T COG1204 163 RGPVLESIVARMRRLNELIRIVGLSATLPN-AEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNL 241 (766)
T ss_pred cCceehhHHHHHHhhCcceEEEEEeeecCC-HHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHH
Confidence 7888888877765 44799999999987 778888776665532222222222223333333322222 233
Q ss_pred HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC------------------C-------------------CCeEEEc
Q 010649 333 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD------------------G-------------------WPALSIH 375 (505)
Q Consensus 333 ~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~------------------~-------------------~~~~~lh 375 (505)
.+..++..+.+++++||||++++.+...++.|+.. . ..+..+|
T Consensus 242 ~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHh 321 (766)
T COG1204 242 ALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHH 321 (766)
T ss_pred HHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccc
Confidence 34444455667789999999999999998888730 0 1245789
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEE----EcC-----CCCChhHHHHhhcccccCCCc--cEE
Q 010649 376 GDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI----NYD-----FPGSLEDYVHRIGRTGRAGAK--GTA 444 (505)
Q Consensus 376 g~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi----~~~-----~p~s~~~~~Qr~GR~~R~g~~--g~~ 444 (505)
++++.++|..+.+.|+.|.++|||||+++++|+|+|.-++|| .|+ .+-+.-++.||+|||||.|-+ |.+
T Consensus 322 AGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~ 401 (766)
T COG1204 322 AGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEA 401 (766)
T ss_pred cCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcE
Confidence 999999999999999999999999999999999999888877 455 344688999999999998865 677
Q ss_pred EEEecCc
Q 010649 445 YTFFTAA 451 (505)
Q Consensus 445 ~~~~~~~ 451 (505)
+++.+..
T Consensus 402 ~i~~~~~ 408 (766)
T COG1204 402 IILATSH 408 (766)
T ss_pred EEEecCc
Confidence 7777433
No 62
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=1.3e-39 Score=325.19 Aligned_cols=300 Identities=22% Similarity=0.241 Sum_probs=213.7
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCch----
Q 010649 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKG---- 213 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~---- 213 (505)
++++.||||||||++|++|++..+... ...+++|++|+++|+.|+.+.+..++.. .+..++++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~------~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~ 71 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ------KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKE 71 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC------CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhc
Confidence 479999999999999999999876542 2568999999999999999999997432 233334432210
Q ss_pred --------HHHHHH------hcCCcEEEeChHHHHHHHHccC----Ccc--CCccEEEEcCcchhhcCCCHHHHHHHHHh
Q 010649 214 --------PQVRDL------QKGVEIVIATPGRLIDMLESHN----TNL--RRVTYLVLDEADRMLDMGFEPQIKKILSQ 273 (505)
Q Consensus 214 --------~~~~~~------~~~~~Iiv~T~~~l~~~l~~~~----~~l--~~~~~lVlDEah~~~~~~~~~~~~~il~~ 273 (505)
...... ....+|+|+||+++...+.... ..+ ...++||+||+|.+.+..+.. +..++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~ 150 (358)
T TIGR01587 72 MGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEV 150 (358)
T ss_pred cCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHH
Confidence 000111 1236799999999988766521 111 123789999999998765433 5555555
Q ss_pred cC-CCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeee--ccChhHHHHHHHHHHHhhcCCCeEEEE
Q 010649 274 IR-PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVD--IVSESQKYNKLVKLLEDIMDGSRILIF 350 (505)
Q Consensus 274 ~~-~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~k~~~l~~~l~~~~~~~~vlVF 350 (505)
+. .+.|+++||||+|+.+.+++..+...+.......... .....+.+. ......+...+..++.....+.++|||
T Consensus 151 l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf 228 (358)
T TIGR01587 151 LKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEE--RRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAII 228 (358)
T ss_pred HHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCccc--cccccccceeeccccccCHHHHHHHHHHhhCCCeEEEE
Confidence 53 5789999999999887777766543322111111000 000111111 112234555666666665567899999
Q ss_pred eCCcccHHHHHHHHHhCCC--CeEEEcCCCCHHHHHH----HHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCCC
Q 010649 351 MDTKKGCDQITRQLRMDGW--PALSIHGDKSQAERDW----VLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGS 424 (505)
Q Consensus 351 ~~~~~~~~~l~~~L~~~~~--~~~~lhg~~~~~~r~~----~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s 424 (505)
|++++.|+.++..|++.+. .+..+||++++.+|.. +++.|++++.+|||||+++++|+|++ +++||++..|
T Consensus 229 ~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~-- 305 (358)
T TIGR01587 229 VNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP-- 305 (358)
T ss_pred ECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--
Confidence 9999999999999988765 4899999999999976 48899999999999999999999995 8899988877
Q ss_pred hhHHHHhhcccccCCCc----cEEEEEecCcc
Q 010649 425 LEDYVHRIGRTGRAGAK----GTAYTFFTAAN 452 (505)
Q Consensus 425 ~~~~~Qr~GR~~R~g~~----g~~~~~~~~~~ 452 (505)
+++|+||+||+||.|+. |..++|....+
T Consensus 306 ~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 306 IDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 88999999999998864 36777766543
No 63
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=2.2e-39 Score=363.86 Aligned_cols=325 Identities=19% Similarity=0.247 Sum_probs=248.1
Q ss_pred HHHHHHHH-cCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHH
Q 010649 109 YVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ 187 (505)
Q Consensus 109 ~~~~~l~~-~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q 187 (505)
++.+.+++ .|| +|+++|+++++.+++|++++++||||+|||++++++++.... .++++|||+||++|+.|
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~--------~g~~aLVl~PTreLa~Q 137 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL--------KGKKCYIILPTTLLVKQ 137 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh--------cCCeEEEEECHHHHHHH
Confidence 44556655 788 799999999999999999999999999999966655554322 26789999999999999
Q ss_pred HHHHHHHhcCCC--CceEEEEECCCCchHHH---HHHhc-CCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhc-
Q 010649 188 IQQESTKFGASS--KIKSTCIYGGVPKGPQV---RDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD- 260 (505)
Q Consensus 188 ~~~~~~~~~~~~--~i~~~~~~gg~~~~~~~---~~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~- 260 (505)
+.+.+..++... ++.+..++|+.+..++. ..+.. .++|+|+||++|.+.+... . ..+++++|+||||+|++
T Consensus 138 i~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml~~ 215 (1638)
T PRK14701 138 TVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFLKA 215 (1638)
T ss_pred HHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceecccc
Confidence 999999987654 46677888988776553 33444 4899999999998876542 1 26799999999999986
Q ss_pred ----------CCCHHHHHH----HHH----------------------hcCCCCc-eEEecCCChHHHHHHHHHHccCCc
Q 010649 261 ----------MGFEPQIKK----ILS----------------------QIRPDRQ-TLYWSATWPKEVEHLARQYLYNPY 303 (505)
Q Consensus 261 ----------~~~~~~~~~----il~----------------------~~~~~~~-~v~~SAT~~~~~~~~~~~~~~~~~ 303 (505)
++|.+.+.. ++. .++..+| ++++|||++.... ...++.++.
T Consensus 216 ~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l~~~~l 293 (1638)
T PRK14701 216 SKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKLYRELL 293 (1638)
T ss_pred ccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHHhhcCe
Confidence 588887764 332 2234555 5679999985311 112345566
Q ss_pred EEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCccc---HHHHHHHHHhCCCCeEEEcCCCCH
Q 010649 304 KVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKG---CDQITRQLRMDGWPALSIHGDKSQ 380 (505)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~---~~~l~~~L~~~~~~~~~lhg~~~~ 380 (505)
.+.++... ....++.+.+.......+ ..+.++++.. +..+||||++++. |+.++..|+..|+++..+|++
T Consensus 294 ~f~v~~~~-~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~--- 366 (1638)
T PRK14701 294 GFEVGSGR-SALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK--- 366 (1638)
T ss_pred EEEecCCC-CCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch---
Confidence 66665554 334456666555554444 5677777765 3579999999886 589999999999999999995
Q ss_pred HHHHHHHHHHhcCCCcEEEEc----ccccccCCCCC-CCEEEEcCCCC---ChhHHHHhh-------------cccccCC
Q 010649 381 AERDWVLSEFKAGKSPIMTAT----DVAARGLDVKD-VKYVINYDFPG---SLEDYVHRI-------------GRTGRAG 439 (505)
Q Consensus 381 ~~r~~~~~~f~~g~~~vLVaT----~~~~~Gidi~~-~~~Vi~~~~p~---s~~~~~Qr~-------------GR~~R~g 439 (505)
|..++++|++|+++||||| ++++||||+|+ |++|||||+|. +.+.|.|.. ||++|.|
T Consensus 367 --R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g 444 (1638)
T PRK14701 367 --NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEG 444 (1638)
T ss_pred --HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccC
Confidence 8899999999999999999 58999999999 99999999999 877666655 9999999
Q ss_pred CccEEEEEecCccHHH
Q 010649 440 AKGTAYTFFTAANARF 455 (505)
Q Consensus 440 ~~g~~~~~~~~~~~~~ 455 (505)
....++..+...+...
T Consensus 445 ~~~~~~~~~~~~~~~~ 460 (1638)
T PRK14701 445 IPIEGVLDVFPEDVEF 460 (1638)
T ss_pred CcchhHHHhHHHHHHH
Confidence 8877774444433333
No 64
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=7.1e-39 Score=342.54 Aligned_cols=304 Identities=19% Similarity=0.290 Sum_probs=233.4
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH-hcCCCCceE
Q 010649 125 IQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASSKIKS 203 (505)
Q Consensus 125 ~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~-~~~~~~i~~ 203 (505)
+-.+.+..+.++++++++|+||||||++|.++++..... ..+++|++|||++|.|+++.+.+ ++...+..+
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~--------~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI--------NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc--------CCeEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 344566677788999999999999999999888865321 34799999999999999999864 455556666
Q ss_pred EEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcch-hhcCCC-HHHHHHHHHhcCCCCceE
Q 010649 204 TCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR-MLDMGF-EPQIKKILSQIRPDRQTL 281 (505)
Q Consensus 204 ~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~-~~~~~~-~~~~~~il~~~~~~~~~v 281 (505)
...+++.... ....+|+|+||++|.+++.. ...++++++|||||+|. .++.++ ...+..++..++++.|++
T Consensus 81 Gy~vr~~~~~------~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqli 153 (812)
T PRK11664 81 GYRMRAESKV------GPNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLL 153 (812)
T ss_pred EEEecCcccc------CCCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEE
Confidence 6666654321 23468999999999998876 45789999999999995 455443 233455667778899999
Q ss_pred EecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHH-----HHHHHHHhhcCCCeEEEEeCCccc
Q 010649 282 YWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYN-----KLVKLLEDIMDGSRILIFMDTKKG 356 (505)
Q Consensus 282 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-----~l~~~l~~~~~~~~vlVF~~~~~~ 356 (505)
+||||++.+. + ..++.++..+.+... ...+.+.+.......+.. .+..++.. ..+.+||||+++.+
T Consensus 154 lmSATl~~~~--l-~~~~~~~~~I~~~gr----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~e 224 (812)
T PRK11664 154 IMSATLDNDR--L-QQLLPDAPVIVSEGR----SFPVERRYQPLPAHQRFDEAVARATAELLRQ--ESGSLLLFLPGVGE 224 (812)
T ss_pred EEecCCCHHH--H-HHhcCCCCEEEecCc----cccceEEeccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEcCCHHH
Confidence 9999998642 3 456665544443321 122444444344333332 23333322 34689999999999
Q ss_pred HHHHHHHHHh---CCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCC----------
Q 010649 357 CDQITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPG---------- 423 (505)
Q Consensus 357 ~~~l~~~L~~---~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~---------- 423 (505)
++.+++.|++ .++.+..+||++++.+|..+++.|++|+.+|||||+++++|||||+|++||+++.+.
T Consensus 225 i~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~ 304 (812)
T PRK11664 225 IQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGL 304 (812)
T ss_pred HHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCc
Confidence 9999999987 578899999999999999999999999999999999999999999999999988764
Q ss_pred --------ChhHHHHhhcccccCCCccEEEEEecCccH
Q 010649 424 --------SLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (505)
Q Consensus 424 --------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 453 (505)
|.++|.||.||+||. +.|.||.++++.+.
T Consensus 305 ~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 305 TRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred ceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 346899999999999 79999999997643
No 65
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=4.7e-38 Score=346.93 Aligned_cols=292 Identities=19% Similarity=0.310 Sum_probs=221.4
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHH
Q 010649 109 YVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (505)
Q Consensus 109 ~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~ 188 (505)
++.+.+.+....+|+++|+.+++.++.|++++++||||+|||+ |.+|++..+.. .++++|||+||++||.|+
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-------~g~~vLIL~PTreLa~Qi 137 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-------KGKRCYIILPTTLLVIQV 137 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeCHHHHHHHH
Confidence 4455555555668999999999999999999999999999997 66666666543 267899999999999999
Q ss_pred HHHHHHhcCCCCceEE---EEECCCCchHHH---HHHhc-CCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhc-
Q 010649 189 QQESTKFGASSKIKST---CIYGGVPKGPQV---RDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD- 260 (505)
Q Consensus 189 ~~~~~~~~~~~~i~~~---~~~gg~~~~~~~---~~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~- 260 (505)
++.+.++....++.+. .++|+.+...+. ..+.. +++|+|+||++|.+.+.... . +++++|+||||+|++
T Consensus 138 ~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L~~ 214 (1171)
T TIGR01054 138 AEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALLKA 214 (1171)
T ss_pred HHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhhhc
Confidence 9999999876665543 467887765442 33333 48999999999988776522 2 899999999999998
Q ss_pred ----------CCCHHH-HHHHH----------------------HhcCCCCc--eEEecCC-ChHHHHHHHHHHccCCcE
Q 010649 261 ----------MGFEPQ-IKKIL----------------------SQIRPDRQ--TLYWSAT-WPKEVEHLARQYLYNPYK 304 (505)
Q Consensus 261 ----------~~~~~~-~~~il----------------------~~~~~~~~--~v~~SAT-~~~~~~~~~~~~~~~~~~ 304 (505)
+||.++ +..++ +.++..+| ++++||| +|..+.. .++.+...
T Consensus 215 ~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~ 291 (1171)
T TIGR01054 215 SKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLG 291 (1171)
T ss_pred cccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccc
Confidence 677664 44433 23344455 5678999 5655432 23444445
Q ss_pred EEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCc---ccHHHHHHHHHhCCCCeEEEcCCCCHH
Q 010649 305 VIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTK---KGCDQITRQLRMDGWPALSIHGDKSQA 381 (505)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~---~~~~~l~~~L~~~~~~~~~lhg~~~~~ 381 (505)
+.++... ....++.+.+..... +...+.++++.. +.++||||+++ +.|+.++..|++.|+++..+||++++
T Consensus 292 ~~v~~~~-~~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~- 365 (1171)
T TIGR01054 292 FEVGGGS-DTLRNVVDVYVEDED--LKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK- 365 (1171)
T ss_pred eEecCcc-ccccceEEEEEeccc--HHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH-
Confidence 5555443 334455555543332 245567777664 35799999999 99999999999999999999999973
Q ss_pred HHHHHHHHHhcCCCcEEEE----cccccccCCCCC-CCEEEEcCCCC
Q 010649 382 ERDWVLSEFKAGKSPIMTA----TDVAARGLDVKD-VKYVINYDFPG 423 (505)
Q Consensus 382 ~r~~~~~~f~~g~~~vLVa----T~~~~~Gidi~~-~~~Vi~~~~p~ 423 (505)
.++++|++|+++|||| |++++||||+|+ +++|||||+|.
T Consensus 366 ---~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 366 ---EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred ---HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 6899999999999999 499999999999 89999988774
No 66
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=4.4e-37 Score=335.76 Aligned_cols=324 Identities=25% Similarity=0.317 Sum_probs=244.6
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 010649 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (505)
Q Consensus 119 ~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~ 198 (505)
..++++||.+++..++.+ ++++++|||+|||++|++++...+.. .+.++|||+||++|+.||.+.++++...
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~-------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK-------KGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh-------CCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 357899999999988886 99999999999999999888777632 2567999999999999999999998755
Q ss_pred CCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCC
Q 010649 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 278 (505)
Q Consensus 199 ~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~ 278 (505)
....+..++|+.+... ...+...++|+|+||+.+...+......+.++++|||||||++........+........+.+
T Consensus 85 ~~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~ 163 (773)
T PRK13766 85 PEEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNP 163 (773)
T ss_pred CCceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCC
Confidence 4557777887766543 334455689999999999888877777888999999999999876543444444444445677
Q ss_pred ceEEecCCChHH---HHHHHHHHccCCcEEE--------------------EcCCC------------------------
Q 010649 279 QTLYWSATWPKE---VEHLARQYLYNPYKVI--------------------IGSPD------------------------ 311 (505)
Q Consensus 279 ~~v~~SAT~~~~---~~~~~~~~~~~~~~~~--------------------~~~~~------------------------ 311 (505)
++++||||+... +..+.+.+....+.+. +..+.
T Consensus 164 ~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~ 243 (773)
T PRK13766 164 LVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELG 243 (773)
T ss_pred EEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 899999997322 2222222111000000 00000
Q ss_pred cc--cc------------cceee---------------------------------------------------------
Q 010649 312 LK--AN------------HAIRQ--------------------------------------------------------- 320 (505)
Q Consensus 312 ~~--~~------------~~~~~--------------------------------------------------------- 320 (505)
.. .. ..+.+
T Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~ 323 (773)
T PRK13766 244 VIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKAS 323 (773)
T ss_pred CcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHH
Confidence 00 00 00000
Q ss_pred ---------------eeeccChhHHHHHHHHHHHhhc---CCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCC-----
Q 010649 321 ---------------HVDIVSESQKYNKLVKLLEDIM---DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD----- 377 (505)
Q Consensus 321 ---------------~~~~~~~~~k~~~l~~~l~~~~---~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~----- 377 (505)
.........|+..|.++|.+.. ...++||||++++.|+.|++.|...++.+..+||.
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~ 403 (773)
T PRK13766 324 KRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDG 403 (773)
T ss_pred HHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccc
Confidence 0000122356667777776643 45699999999999999999999999999999886
Q ss_pred ---CCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCcc
Q 010649 378 ---KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAAN 452 (505)
Q Consensus 378 ---~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 452 (505)
+++.+|..++++|++|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.+. |.+++++..+.
T Consensus 404 ~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 404 DKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred cCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999999999999999854 88888887653
No 67
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=7e-38 Score=327.94 Aligned_cols=319 Identities=20% Similarity=0.259 Sum_probs=241.2
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcC
Q 010649 118 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (505)
Q Consensus 118 ~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~ 197 (505)
|+ .|+++|..+++.+.+|+ |+.+.||+|||++|++|++..... ++.|+|++||++||.|.++++..+..
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~--------G~~v~VvTpt~~LA~qd~e~~~~l~~ 144 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE--------GKGVHLITVNDYLAKRDAEEMGQVYE 144 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc--------CCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 44 79999999999888776 999999999999999999977665 77799999999999999999999999
Q ss_pred CCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHH-HHHHHcc------CCccCCccEEEEcCcchhhc-C--------
Q 010649 198 SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRMLD-M-------- 261 (505)
Q Consensus 198 ~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~------~~~l~~~~~lVlDEah~~~~-~-------- 261 (505)
..++.+.++.|+.+...+.+ ....++|+++||++| .++|... ...++.+.++||||||+|+= .
T Consensus 145 ~lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliis 223 (790)
T PRK09200 145 FLGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIIS 223 (790)
T ss_pred hcCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeee
Confidence 99999999999988433333 345699999999998 4555432 23567899999999998651 0
Q ss_pred -------CCHHHHHHHHHhcCCC---------------------------------------------------------
Q 010649 262 -------GFEPQIKKILSQIRPD--------------------------------------------------------- 277 (505)
Q Consensus 262 -------~~~~~~~~il~~~~~~--------------------------------------------------------- 277 (505)
.+...+..++..+...
T Consensus 224 g~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~ 303 (790)
T PRK09200 224 GKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDV 303 (790)
T ss_pred CCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCC
Confidence 0111122222222110
Q ss_pred ------------------------------------------------------------CceEEecCCChHHHHHHHHH
Q 010649 278 ------------------------------------------------------------RQTLYWSATWPKEVEHLARQ 297 (505)
Q Consensus 278 ------------------------------------------------------------~~~v~~SAT~~~~~~~~~~~ 297 (505)
..+.+||+|...+..++.+.
T Consensus 304 dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~ 383 (790)
T PRK09200 304 DYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEV 383 (790)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHH
Confidence 13345555554434444333
Q ss_pred HccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcC
Q 010649 298 YLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHG 376 (505)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg 376 (505)
|..+-.. +......... -.......+...|...+.+.+... ....++||||+|++.++.++..|.+.++++..+|+
T Consensus 384 Y~l~v~~--IPt~kp~~r~-d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~ 460 (790)
T PRK09200 384 YNMEVVQ--IPTNRPIIRI-DYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNA 460 (790)
T ss_pred hCCcEEE--CCCCCCcccc-cCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecC
Confidence 3222111 1111100111 112233456678999998888764 45679999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEcccccccCCC---CCCC-----EEEEcCCCCChhHHHHhhcccccCCCccEEEEEe
Q 010649 377 DKSQAERDWVLSEFKAGKSPIMTATDVAARGLDV---KDVK-----YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFF 448 (505)
Q Consensus 377 ~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi---~~~~-----~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 448 (505)
++.+.++..+..+++.| .|+|||++++||+|| |++. +||++++|.|...|+||+||+||.|.+|.++.|+
T Consensus 461 ~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~i 538 (790)
T PRK09200 461 KNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFI 538 (790)
T ss_pred CccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEE
Confidence 99999988888887766 699999999999999 6898 9999999999999999999999999999999999
Q ss_pred cCccH
Q 010649 449 TAANA 453 (505)
Q Consensus 449 ~~~~~ 453 (505)
+..|.
T Consensus 539 s~eD~ 543 (790)
T PRK09200 539 SLEDD 543 (790)
T ss_pred cchHH
Confidence 98654
No 68
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=9.3e-38 Score=317.47 Aligned_cols=334 Identities=25% Similarity=0.277 Sum_probs=243.0
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHH
Q 010649 106 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (505)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La 185 (505)
+++.......--....+|+||.+.+..+| ++|+|+++|||+|||++|...++.|+...+ ..++++++|++-|+
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p------~~KiVF~aP~~pLv 119 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP------KGKVVFLAPTRPLV 119 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC------cceEEEeeCCchHH
Confidence 44444444444455689999999999999 999999999999999999998999988864 46799999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCc-cCCccEEEEcCcchhhcCC-C
Q 010649 186 VQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTN-LRRVTYLVLDEADRMLDMG-F 263 (505)
Q Consensus 186 ~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~-l~~~~~lVlDEah~~~~~~-~ 263 (505)
.|+.+.+..++.. ..+....|+.........+....+|+|+||+.|.+.|.+.... ++.|.++||||||+-.... +
T Consensus 120 ~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y 197 (746)
T KOG0354|consen 120 NQQIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPY 197 (746)
T ss_pred HHHHHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccH
Confidence 9999888887755 5666677774444444466667899999999999988775433 6899999999999876544 4
Q ss_pred HHHHHHHHHhcCCCCceEEecCCChHHHHHHHHH---HccC----------------------CcE--------------
Q 010649 264 EPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQ---YLYN----------------------PYK-------------- 304 (505)
Q Consensus 264 ~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~---~~~~----------------------~~~-------------- 304 (505)
...++.++..-....|+|++|||+.++....... ++.+ |..
T Consensus 198 ~~Vmr~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~ 277 (746)
T KOG0354|consen 198 NNIMREYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGM 277 (746)
T ss_pred HHHHHHHHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHH
Confidence 4555566666555669999999965432222111 0000 000
Q ss_pred ----------------EEEcC--CCc-------ccccc--eeee--e---------------------------------
Q 010649 305 ----------------VIIGS--PDL-------KANHA--IRQH--V--------------------------------- 322 (505)
Q Consensus 305 ----------------~~~~~--~~~-------~~~~~--~~~~--~--------------------------------- 322 (505)
..... .+. ..... -.+. +
T Consensus 278 ~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e 357 (746)
T KOG0354|consen 278 IIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEE 357 (746)
T ss_pred HHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccc
Confidence 00000 000 00000 0000 0
Q ss_pred -----------------------------e--ccChhHHHHHHHHHHHhhc---CCCeEEEEeCCcccHHHHHHHHHh--
Q 010649 323 -----------------------------D--IVSESQKYNKLVKLLEDIM---DGSRILIFMDTKKGCDQITRQLRM-- 366 (505)
Q Consensus 323 -----------------------------~--~~~~~~k~~~l~~~l~~~~---~~~~vlVF~~~~~~~~~l~~~L~~-- 366 (505)
. ......|+..+.+.+.+.. ++.++||||.++..|+.|..+|.+
T Consensus 358 ~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~ 437 (746)
T KOG0354|consen 358 VALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLH 437 (746)
T ss_pred cchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhh
Confidence 0 0012345666666665543 345999999999999999999983
Q ss_pred -CCCCeEEEc--------CCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhccccc
Q 010649 367 -DGWPALSIH--------GDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGR 437 (505)
Q Consensus 367 -~~~~~~~lh--------g~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R 437 (505)
.+++...+- .+|++.++.++++.|++|+++|||||+++++|+||+.|++||.||...|+...+||.|| ||
T Consensus 438 ~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gR 516 (746)
T KOG0354|consen 438 ELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GR 516 (746)
T ss_pred hcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cc
Confidence 234444433 37999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CCCccEEEEEecC
Q 010649 438 AGAKGTAYTFFTA 450 (505)
Q Consensus 438 ~g~~g~~~~~~~~ 450 (505)
+ +.|.++++++.
T Consensus 517 a-~ns~~vll~t~ 528 (746)
T KOG0354|consen 517 A-RNSKCVLLTTG 528 (746)
T ss_pred c-cCCeEEEEEcc
Confidence 9 78899999884
No 69
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=2e-37 Score=321.50 Aligned_cols=320 Identities=18% Similarity=0.198 Sum_probs=235.0
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 010649 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~ 199 (505)
..++|+|.|++..+..++..++.++||+|||++|++|++.+... ++.++||+|+++||.|+.+++..+....
T Consensus 67 lglrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~--------g~~V~VVTpn~yLA~Rdae~m~~l~~~L 138 (762)
T TIGR03714 67 LGMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT--------GKGAMLVTTNDYLAKRDAEEMGPVYEWL 138 (762)
T ss_pred cCCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc--------CCceEEeCCCHHHHHHHHHHHHHHHhhc
Confidence 34577777777766656668999999999999999998877665 5569999999999999999999999889
Q ss_pred CceEEEEECCCC---chHHHHHHhcCCcEEEeChHHH-HHHHHc------cCCccCCccEEEEcCcchhhcC-C------
Q 010649 200 KIKSTCIYGGVP---KGPQVRDLQKGVEIVIATPGRL-IDMLES------HNTNLRRVTYLVLDEADRMLDM-G------ 262 (505)
Q Consensus 200 ~i~~~~~~gg~~---~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~------~~~~l~~~~~lVlDEah~~~~~-~------ 262 (505)
++.+.+++++.. .....+....+++|+++||++| .+++.. ....++.+.++|+||||.|+-. .
T Consensus 139 GLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartplii 218 (762)
T TIGR03714 139 GLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVI 218 (762)
T ss_pred CCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeee
Confidence 999988877622 2233344456799999999999 555532 2345678999999999987411 0
Q ss_pred ---------CHHHHHHHHHhcCCC--------------------------------------------------------
Q 010649 263 ---------FEPQIKKILSQIRPD-------------------------------------------------------- 277 (505)
Q Consensus 263 ---------~~~~~~~il~~~~~~-------------------------------------------------------- 277 (505)
+...+..++..+.+.
T Consensus 219 sg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d 298 (762)
T TIGR03714 219 SGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRN 298 (762)
T ss_pred eCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcC
Confidence 111111222222110
Q ss_pred -------------------------------------------------------------CceEEecCCChHHHHHHHH
Q 010649 278 -------------------------------------------------------------RQTLYWSATWPKEVEHLAR 296 (505)
Q Consensus 278 -------------------------------------------------------------~~~v~~SAT~~~~~~~~~~ 296 (505)
.++.+||+|...+..++.+
T Consensus 299 ~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~ 378 (762)
T TIGR03714 299 KDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIE 378 (762)
T ss_pred CceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHH
Confidence 2344555555444444444
Q ss_pred HHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEc
Q 010649 297 QYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIH 375 (505)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lh 375 (505)
.|..+-.. +....... ..............|...+.+.+.+. ....++||||++++.++.++..|.+.++++..+|
T Consensus 379 iY~l~v~~--IPt~kp~~-r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~ 455 (762)
T TIGR03714 379 TYSLSVVK--IPTNKPII-RIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLN 455 (762)
T ss_pred HhCCCEEE--cCCCCCee-eeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEec
Confidence 33222111 11111000 01112234456778899888888764 4566999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCC---------CCCEEEEcCCCCChhHHHHhhcccccCCCccEEEE
Q 010649 376 GDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK---------DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYT 446 (505)
Q Consensus 376 g~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~---------~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~ 446 (505)
+++.+.++..+..+++.| .|+|||++++||+||| ++.+|+++++|....+ +||+||+||.|.+|.++.
T Consensus 456 a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~ 532 (762)
T TIGR03714 456 AQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQF 532 (762)
T ss_pred CCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEE
Confidence 999999988887777766 6999999999999999 8999999999988777 999999999999999999
Q ss_pred EecCccH
Q 010649 447 FFTAANA 453 (505)
Q Consensus 447 ~~~~~~~ 453 (505)
|++..|.
T Consensus 533 ~is~eD~ 539 (762)
T TIGR03714 533 FVSLEDD 539 (762)
T ss_pred EEccchh
Confidence 9998764
No 70
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=2.1e-38 Score=296.88 Aligned_cols=310 Identities=30% Similarity=0.481 Sum_probs=241.4
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHh---cCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCcc
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKF---GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVT 248 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~---~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~ 248 (505)
.|.++|+-|++||++|....+++| .....++...+.||.-...|...+..+.+|+|+||+++.+.+......+..+.
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~cr 365 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCR 365 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeE
Confidence 567999999999999999966665 44555677788999999999999999999999999999999999999999999
Q ss_pred EEEEcCcchhhcCCCHHHHHHHHHhcC------CCCceEEecCCChH-HHHHHHHHHccCCcEEEEcCCCcccccceeee
Q 010649 249 YLVLDEADRMLDMGFEPQIKKILSQIR------PDRQTLYWSATWPK-EVEHLARQYLYNPYKVIIGSPDLKANHAIRQH 321 (505)
Q Consensus 249 ~lVlDEah~~~~~~~~~~~~~il~~~~------~~~~~v~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (505)
++|+||++.++..++...+..+..+++ ...|.+..|||+.. ++..+....+.-|.-+.+...++ ....+...
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~-vpetvHhv 444 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDL-VPETVHHV 444 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccc-cchhhccc
Confidence 999999999999888888888877775 34688999999742 34555555555555555444331 11111111
Q ss_pred eeccC------------------------------hhHHHHHHHH---------HHHhhcCCCeEEEEeCCcccHHHHHH
Q 010649 322 VDIVS------------------------------ESQKYNKLVK---------LLEDIMDGSRILIFMDTKKGCDQITR 362 (505)
Q Consensus 322 ~~~~~------------------------------~~~k~~~l~~---------~l~~~~~~~~vlVF~~~~~~~~~l~~ 362 (505)
+..+. ..+....... .++++ ...+.||||.|+..|+.|.+
T Consensus 445 v~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h-~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 445 VKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH-AMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred eeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh-ccCceEEEEeccccchHHHH
Confidence 11110 0111111112 22222 33589999999999999999
Q ss_pred HHHhCC---CCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCC
Q 010649 363 QLRMDG---WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAG 439 (505)
Q Consensus 363 ~L~~~~---~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g 439 (505)
++++.+ +.|+++||+..+.+|.+.++.|+....++||||+++++|+||..+-++|+..+|.+...|+|||||+||+.
T Consensus 524 ~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 524 MMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred HHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhh
Confidence 998864 68999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEecC--------------------------------ccHHHHHHHHHHHHHhCCCCCHHHHHhhcCCCC
Q 010649 440 AKGTAYTFFTA--------------------------------ANARFAKELITILEEAGQKVSPELAAMGRGAPP 483 (505)
Q Consensus 440 ~~g~~~~~~~~--------------------------------~~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~~~ 483 (505)
+.|.++.++.. ++...+.++.+.|....|++...+.--...+.+
T Consensus 604 rmglaislvat~~ekvwyh~c~srgr~c~nt~l~e~~gc~iwyne~~llaeve~hln~ti~qv~~~~~vpv~~fdg 679 (725)
T KOG0349|consen 604 RMGLAISLVATVPEKVWYHWCKSRGRSCNNTNLTEVRGCCIWYNEPNLLAEVEDHLNITIQQVDKTMDVPVNDFDG 679 (725)
T ss_pred hcceeEEEeeccchheeehhhhccCCcccCCccccccceEEEeCchhHHHHHHHhhcceeeeeCCCCCCcccccCC
Confidence 88999887653 235667777777777777777766665655544
No 71
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.5e-37 Score=317.67 Aligned_cols=321 Identities=19% Similarity=0.222 Sum_probs=226.6
Q ss_pred CCCcHHHHHHHHHHhc-C--CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 120 FEPTPIQAQGWPMALK-G--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~-~--~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
..|+|||.+++..+.. + +..++++|||+|||++++.. +..+ +.++|||||+.+|+.||.+++.+|.
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~a-a~~l----------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTA-ACTV----------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHH-HHHh----------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 4799999999998874 3 46899999999999997754 3332 2349999999999999999999987
Q ss_pred CCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHc--------cCCccCCccEEEEcCcchhhcCCCHHHHH
Q 010649 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES--------HNTNLRRVTYLVLDEADRMLDMGFEPQIK 268 (505)
Q Consensus 197 ~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~--------~~~~l~~~~~lVlDEah~~~~~~~~~~~~ 268 (505)
......+..++|+.... ......|+|+|++.+.....+ ..+.-..+++||+||||++. ...+.
T Consensus 323 ~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp----A~~fr 393 (732)
T TIGR00603 323 TIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP----AAMFR 393 (732)
T ss_pred CCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc----HHHHH
Confidence 55555666666653221 122368999999987532211 11223468899999999986 45566
Q ss_pred HHHHhcCCCCceEEecCCChHHHHH--HHHHHccCCcEEEEcCCCcccccce--------------------------ee
Q 010649 269 KILSQIRPDRQTLYWSATWPKEVEH--LARQYLYNPYKVIIGSPDLKANHAI--------------------------RQ 320 (505)
Q Consensus 269 ~il~~~~~~~~~v~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~ 320 (505)
.++..+. ....+++|||+..+... .... +..|........++.....+ ..
T Consensus 394 ~il~~l~-a~~RLGLTATP~ReD~~~~~L~~-LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k 471 (732)
T TIGR00603 394 RVLTIVQ-AHCKLGLTATLVREDDKITDLNF-LIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKR 471 (732)
T ss_pred HHHHhcC-cCcEEEEeecCcccCCchhhhhh-hcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhh
Confidence 6666663 45679999998643211 1111 22222222111110000000 00
Q ss_pred eeeccChhHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcC-CCcEE
Q 010649 321 HVDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG-KSPIM 398 (505)
Q Consensus 321 ~~~~~~~~~k~~~l~~~l~~~~-~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g-~~~vL 398 (505)
......+..|+..+..+++.+. .+.++||||++...++.++..|. +..+||++++.+|..+++.|+++ .+++|
T Consensus 472 ~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vL 546 (732)
T TIGR00603 472 MLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTI 546 (732)
T ss_pred hHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEE
Confidence 0111233456666666776542 55699999999999999988873 45699999999999999999975 88999
Q ss_pred EEcccccccCCCCCCCEEEEcCCC-CChhHHHHhhcccccCCCccEE-------EEEecCcc--HHHHHHHHHHHHHhC
Q 010649 399 TATDVAARGLDVKDVKYVINYDFP-GSLEDYVHRIGRTGRAGAKGTA-------YTFFTAAN--ARFAKELITILEEAG 467 (505)
Q Consensus 399 VaT~~~~~Gidi~~~~~Vi~~~~p-~s~~~~~Qr~GR~~R~g~~g~~-------~~~~~~~~--~~~~~~l~~~l~~~~ 467 (505)
|+|+++.+|||+|++++||+++.| .|..+|+||+||++|.+..|.+ |.|++.+. ..+...-..+|.+.+
T Consensus 547 v~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~qG 625 (732)
T TIGR00603 547 FLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQG 625 (732)
T ss_pred EEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHHHCC
Confidence 999999999999999999999987 4999999999999999876654 88888874 445566666666553
No 72
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.5e-36 Score=312.96 Aligned_cols=316 Identities=22% Similarity=0.255 Sum_probs=238.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010649 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~ 200 (505)
.|+++|..+...+.+|+ |+.++||+|||++|++|++..... +..|+|++||++||.|.++++..+....+
T Consensus 56 ~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l~~~LG 125 (745)
T TIGR00963 56 RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQVYRFLG 125 (745)
T ss_pred CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHHhccCC
Confidence 68888888888777665 999999999999999999755554 44599999999999999999999999999
Q ss_pred ceEEEEECCCCchHHHHHHhcCCcEEEeChHHH-HHHHHcc------CCccCCccEEEEcCcchhhc-CCC---------
Q 010649 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRMLD-MGF--------- 263 (505)
Q Consensus 201 i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~------~~~l~~~~~lVlDEah~~~~-~~~--------- 263 (505)
+++.+++|+.+...... ...++|+++||.+| .+++... ...++.+.++|+||+|+++- ...
T Consensus 126 Lsv~~i~g~~~~~~r~~--~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~ 203 (745)
T TIGR00963 126 LSVGLILSGMSPEERRE--AYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPA 203 (745)
T ss_pred CeEEEEeCCCCHHHHHH--hcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCC
Confidence 99999999987644333 33589999999999 8888765 34678899999999998652 100
Q ss_pred ------HHHHHHHHHhcCCC------------------------------------------------------------
Q 010649 264 ------EPQIKKILSQIRPD------------------------------------------------------------ 277 (505)
Q Consensus 264 ------~~~~~~il~~~~~~------------------------------------------------------------ 277 (505)
......+...+..+
T Consensus 204 ~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYi 283 (745)
T TIGR00963 204 EKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYI 283 (745)
T ss_pred CCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEE
Confidence 00011111111100
Q ss_pred ---------------------------------------------------------CceEEecCCChHHHHHHHHHHcc
Q 010649 278 ---------------------------------------------------------RQTLYWSATWPKEVEHLARQYLY 300 (505)
Q Consensus 278 ---------------------------------------------------------~~~v~~SAT~~~~~~~~~~~~~~ 300 (505)
..+.+||+|...+..++.+.|..
T Consensus 284 V~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l 363 (745)
T TIGR00963 284 VRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNL 363 (745)
T ss_pred EECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCC
Confidence 13445555555444444444433
Q ss_pred CCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHh-hcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCC
Q 010649 301 NPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 379 (505)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~ 379 (505)
+-..+....+ .... ........+...|...+.+.+.+ +..+.++||||+++..++.++..|.+.++++..+|+.
T Consensus 364 ~vv~IPtnkp--~~R~-d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~-- 438 (745)
T TIGR00963 364 EVVVVPTNRP--VIRK-DLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK-- 438 (745)
T ss_pred CEEEeCCCCC--eeee-eCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--
Confidence 3222111111 0001 11112234566788777776654 4456799999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcccccccCCCCC-------CCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCcc
Q 010649 380 QAERDWVLSEFKAGKSPIMTATDVAARGLDVKD-------VKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAAN 452 (505)
Q Consensus 380 ~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~-------~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 452 (505)
+.+|+..+..|..+...|+|||++++||+||+. ..+||+++.|.|...|.|++||+||.|.+|.+..|++..|
T Consensus 439 q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 439 NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 889999999999999999999999999999998 5599999999999999999999999999999999999886
Q ss_pred H
Q 010649 453 A 453 (505)
Q Consensus 453 ~ 453 (505)
.
T Consensus 519 ~ 519 (745)
T TIGR00963 519 N 519 (745)
T ss_pred H
Confidence 4
No 73
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.1e-36 Score=312.75 Aligned_cols=339 Identities=22% Similarity=0.296 Sum_probs=257.9
Q ss_pred cCCCCCcHHHHHHHHHHhc-CCcEEEEccCCCchHHHHHHHHHHHHhcCC--CCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 010649 117 AGFFEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQP--FLAPGDGPIVLVLAPTRELAVQIQQEST 193 (505)
Q Consensus 117 ~~~~~~~~~Q~~~i~~~l~-~~~~li~a~TGsGKT~~~~~~~l~~l~~~~--~~~~~~~~~vlil~Pt~~La~Q~~~~~~ 193 (505)
.+|..++.+|.+++|.++. ..|+|||||||||||.+|++.++..+.+.. ..-..+..++++|+|+++||.++.+.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 5677899999999999985 578999999999999999999998887521 1223357889999999999999999998
Q ss_pred HhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccC----CccCCccEEEEcCcchhhcCCCHHHHHH
Q 010649 194 KFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN----TNLRRVTYLVLDEADRMLDMGFEPQIKK 269 (505)
Q Consensus 194 ~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~----~~l~~~~~lVlDEah~~~~~~~~~~~~~ 269 (505)
+-+...++.|..++|++...... ...++|+|+|||++ |.+.++. ..++.+.+||+||+|.+-+. .++.++.
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlEt 260 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLET 260 (1230)
T ss_pred hhcccccceEEEecCcchhhHHH---HHhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHHH
Confidence 87788899999999998764433 34589999999998 5554432 23567899999999987765 4888888
Q ss_pred HHHhc-------CCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChh---HHHH-----HH
Q 010649 270 ILSQI-------RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSES---QKYN-----KL 334 (505)
Q Consensus 270 il~~~-------~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~-----~l 334 (505)
|+... ....++|++|||+|+ .++++..+..+|..-.+.......+..+.+.+...... .+.. ..
T Consensus 261 iVaRtlr~vessqs~IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~ 339 (1230)
T KOG0952|consen 261 IVARTLRLVESSQSMIRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCY 339 (1230)
T ss_pred HHHHHHHHHHhhhhheEEEEeeccCCC-HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHH
Confidence 76654 357899999999997 88888877777554444333334444555555443322 1111 12
Q ss_pred HHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC----C-------------------CCeEEEcCCCCHHHHHHHHHHHh
Q 010649 335 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD----G-------------------WPALSIHGDKSQAERDWVLSEFK 391 (505)
Q Consensus 335 ~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~----~-------------------~~~~~lhg~~~~~~r~~~~~~f~ 391 (505)
.++++-+.++.+++|||.++..+-..++.|.+. + .....+|++|..++|..+.+.|.
T Consensus 340 ~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~ 419 (1230)
T KOG0952|consen 340 DKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFK 419 (1230)
T ss_pred HHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHh
Confidence 223334556789999999999999988888652 1 12447899999999999999999
Q ss_pred cCCCcEEEEcccccccCCCCCCCEEE----EcCCCC------ChhHHHHhhcccccCC--CccEEEEEecCccHHHHHHH
Q 010649 392 AGKSPIMTATDVAARGLDVKDVKYVI----NYDFPG------SLEDYVHRIGRTGRAG--AKGTAYTFFTAANARFAKEL 459 (505)
Q Consensus 392 ~g~~~vLVaT~~~~~Gidi~~~~~Vi----~~~~p~------s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~~~~~~~l 459 (505)
.|.++||+||..+++|+|+|+-.++| .||... .+-+.+|..|||||.. ..|.++++.+.+.......|
T Consensus 420 ~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sL 499 (1230)
T KOG0952|consen 420 EGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESL 499 (1230)
T ss_pred cCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHH
Confidence 99999999999999999999877777 344332 4678999999999964 45888888888766555554
Q ss_pred HH
Q 010649 460 IT 461 (505)
Q Consensus 460 ~~ 461 (505)
+.
T Consensus 500 l~ 501 (1230)
T KOG0952|consen 500 LT 501 (1230)
T ss_pred Hc
Confidence 43
No 74
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1.1e-35 Score=293.90 Aligned_cols=291 Identities=18% Similarity=0.186 Sum_probs=202.6
Q ss_pred HHHHHHHHHhcCCc--EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC----
Q 010649 125 IQAQGWPMALKGRD--LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS---- 198 (505)
Q Consensus 125 ~Q~~~i~~~l~~~~--~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~---- 198 (505)
+|.++++.+.++.+ ++++||||||||++|++|++.. ..++++++|+++|++|+.+.+.++...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 59999999998874 7889999999999999988842 234899999999999999998887632
Q ss_pred CCceEEEEECCCCchH-HH-----------------H--HHhcCCcEEEeChHHHHHHHHcc---C-----CccCCccEE
Q 010649 199 SKIKSTCIYGGVPKGP-QV-----------------R--DLQKGVEIVIATPGRLIDMLESH---N-----TNLRRVTYL 250 (505)
Q Consensus 199 ~~i~~~~~~gg~~~~~-~~-----------------~--~~~~~~~Iiv~T~~~l~~~l~~~---~-----~~l~~~~~l 250 (505)
.+..+..+.|...... .. + .....++|+++||+.|..++... . ..+.++++|
T Consensus 70 ~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~i 149 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEE
Confidence 3455666665422110 00 0 01235789999999997655431 1 125789999
Q ss_pred EEcCcchhhcCC-----CHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHH--ccCCcEEEEcCCCc-----------
Q 010649 251 VLDEADRMLDMG-----FEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQY--LYNPYKVIIGSPDL----------- 312 (505)
Q Consensus 251 VlDEah~~~~~~-----~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~----------- 312 (505)
||||+|.+.... +......++.......+++++|||+++.+.+..... +..+.....+..-.
T Consensus 150 V~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 229 (357)
T TIGR03158 150 IFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADN 229 (357)
T ss_pred EEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccc
Confidence 999999876433 222344444544456799999999999888777765 44444333222000
Q ss_pred c------cccceeeeeeccChhHHHHHHH---HHHHhh---cCCCeEEEEeCCcccHHHHHHHHHhCC--CCeEEEcCCC
Q 010649 313 K------ANHAIRQHVDIVSESQKYNKLV---KLLEDI---MDGSRILIFMDTKKGCDQITRQLRMDG--WPALSIHGDK 378 (505)
Q Consensus 313 ~------~~~~~~~~~~~~~~~~k~~~l~---~~l~~~---~~~~~vlVF~~~~~~~~~l~~~L~~~~--~~~~~lhg~~ 378 (505)
. ....+.+.+.. ....+...+. +.+.+. ..++++||||++++.++.++..|++.+ +.+..+||.+
T Consensus 230 ~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~ 308 (357)
T TIGR03158 230 KTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFA 308 (357)
T ss_pred cccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCC
Confidence 0 00123333322 2223333333 333221 245699999999999999999999864 5788999999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccc
Q 010649 379 SQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTG 436 (505)
Q Consensus 379 ~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~ 436 (505)
++.+|..+ ++.+|||||+++++|||+|.+ +|| ++ |.+.++|+||+||+|
T Consensus 309 ~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 309 PKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 99988754 378899999999999999986 555 45 889999999999986
No 75
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=6.7e-35 Score=312.39 Aligned_cols=334 Identities=23% Similarity=0.345 Sum_probs=258.8
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHH
Q 010649 106 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (505)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La 185 (505)
....+..++.+.+...|++||.+|+..+.+|+++||+.+||||||.+|++|++.++...+ .-++|+|.||++||
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~------~a~AL~lYPtnALa 128 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP------SARALLLYPTNALA 128 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc------CccEEEEechhhhH
Confidence 344567888889999999999999999999999999999999999999999999999864 33689999999999
Q ss_pred HHHHHHHHHhcCCCC--ceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHcc----CCccCCccEEEEcCcchhh
Q 010649 186 VQIQQESTKFGASSK--IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH----NTNLRRVTYLVLDEADRML 259 (505)
Q Consensus 186 ~Q~~~~~~~~~~~~~--i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~----~~~l~~~~~lVlDEah~~~ 259 (505)
+.+.+.+.++....+ +....+.|+....+........++|++|||++|..++... .+.++++++|||||+|..-
T Consensus 129 ~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYr 208 (851)
T COG1205 129 NDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYR 208 (851)
T ss_pred hhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecc
Confidence 999999999987766 7777777877776666777888999999999997755443 2346779999999999654
Q ss_pred cCCCHHHH----HHHHHh---cCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccC------
Q 010649 260 DMGFEPQI----KKILSQ---IRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS------ 326 (505)
Q Consensus 260 ~~~~~~~~----~~il~~---~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 326 (505)
-. |+..+ +.+... .....|+|+.|||+.+ ..+++..+........+.... . .......+...+
T Consensus 209 Gv-~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~n-p~e~~~~l~~~~f~~~v~~~g-~-~~~~~~~~~~~p~~~~~~ 284 (851)
T COG1205 209 GV-QGSEVALLLRRLLRRLRRYGSPLQIICTSATLAN-PGEFAEELFGRDFEVPVDEDG-S-PRGLRYFVRREPPIRELA 284 (851)
T ss_pred cc-chhHHHHHHHHHHHHHhccCCCceEEEEeccccC-hHHHHHHhcCCcceeeccCCC-C-CCCceEEEEeCCcchhhh
Confidence 32 33333 333333 3468899999999876 556667776666655322221 1 111111111111
Q ss_pred ---hhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHH----HHHHhCC----CCeEEEcCCCCHHHHHHHHHHHhcCC
Q 010649 327 ---ESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQIT----RQLRMDG----WPALSIHGDKSQAERDWVLSEFKAGK 394 (505)
Q Consensus 327 ---~~~k~~~l~~~l~~~-~~~~~vlVF~~~~~~~~~l~----~~L~~~~----~~~~~lhg~~~~~~r~~~~~~f~~g~ 394 (505)
...+...+..++... ..+-++|+|+.++..++.+. ..+...+ ..+..+++++...+|..++..|+.|+
T Consensus 285 ~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~ 364 (851)
T COG1205 285 ESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGE 364 (851)
T ss_pred hhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCC
Confidence 123334444444333 24559999999999999997 4444445 56888999999999999999999999
Q ss_pred CcEEEEcccccccCCCCCCCEEEEcCCCC-ChhHHHHhhcccccCCCccEEEEEec
Q 010649 395 SPIMTATDVAARGLDVKDVKYVINYDFPG-SLEDYVHRIGRTGRAGAKGTAYTFFT 449 (505)
Q Consensus 395 ~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~-s~~~~~Qr~GR~~R~g~~g~~~~~~~ 449 (505)
+.++++|++++-|+||-+++.||.+..|. +..++.||.||+||.++.+..+.+..
T Consensus 365 ~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 365 LLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred ccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 99999999999999999999999999999 89999999999999987776666665
No 76
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=4.9e-35 Score=311.00 Aligned_cols=330 Identities=23% Similarity=0.318 Sum_probs=263.8
Q ss_pred HHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 010649 115 SKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (505)
Q Consensus 115 ~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~ 194 (505)
...|....+|-|.++|..++.|+++++.+|||.||+++|.+|++.. ++..|||.|..+|.+.+...+.
T Consensus 258 ~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-----------~gitvVISPL~SLm~DQv~~L~- 325 (941)
T KOG0351|consen 258 EVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-----------GGVTVVISPLISLMQDQVTHLS- 325 (941)
T ss_pred HHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-----------CCceEEeccHHHHHHHHHHhhh-
Confidence 4578889999999999999999999999999999999999998754 4579999999999765555553
Q ss_pred hcCCCCceEEEEECCCCchHH---HHHHhc---CCcEEEeChHHHHHH--HHccCCccCC---ccEEEEcCcchhhcCC-
Q 010649 195 FGASSKIKSTCIYGGVPKGPQ---VRDLQK---GVEIVIATPGRLIDM--LESHNTNLRR---VTYLVLDEADRMLDMG- 262 (505)
Q Consensus 195 ~~~~~~i~~~~~~gg~~~~~~---~~~~~~---~~~Iiv~T~~~l~~~--l~~~~~~l~~---~~~lVlDEah~~~~~~- 262 (505)
..+|....+.++....++ .+.+.. .++|+..|||++... +......+.. +.++|+||||++.+++
T Consensus 326 ---~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgH 402 (941)
T KOG0351|consen 326 ---KKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGH 402 (941)
T ss_pred ---hcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcc
Confidence 334777888887766533 233333 478999999997542 1111223333 7899999999999987
Q ss_pred -CHHHHHHHHHh--cCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHH
Q 010649 263 -FEPQIKKILSQ--IRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLE 339 (505)
Q Consensus 263 -~~~~~~~il~~--~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~ 339 (505)
|.+.++.+... ..+...++.+|||....+.+.+-..+.-.....+... ....++...+..-........+...++
T Consensus 403 dFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s--fnR~NL~yeV~~k~~~~~~~~~~~~~~ 480 (941)
T KOG0351|consen 403 DFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS--FNRPNLKYEVSPKTDKDALLDILEESK 480 (941)
T ss_pred cccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc--CCCCCceEEEEeccCccchHHHHHHhh
Confidence 88888776433 2355789999999988887766665554333333332 233445544444444455666667777
Q ss_pred hhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEc
Q 010649 340 DIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINY 419 (505)
Q Consensus 340 ~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~ 419 (505)
...+....||+|.++.+|+.++..|+..++.+..+|++|+..+|..+..+|..++++|+|||=+++.|||-|+|+.||||
T Consensus 481 ~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~ 560 (941)
T KOG0351|consen 481 LRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHY 560 (941)
T ss_pred hcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEEC
Confidence 77788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHH
Q 010649 420 DFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIT 461 (505)
Q Consensus 420 ~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 461 (505)
.+|.|++.|.|-+|||||.|....|++|+...|...+..++.
T Consensus 561 ~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 561 SLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred CCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 999999999999999999999999999999997766655554
No 77
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=2.6e-34 Score=312.24 Aligned_cols=301 Identities=23% Similarity=0.327 Sum_probs=214.5
Q ss_pred HHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc----cHHHHHHHHHHHHH-hcCC
Q 010649 124 PIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP----TRELAVQIQQESTK-FGAS 198 (505)
Q Consensus 124 ~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P----t~~La~Q~~~~~~~-~~~~ 198 (505)
.+..+.+..+..++.++++|+||||||+ .+|.+...... +....+++..| +++||.++.+++.. ++..
T Consensus 77 ~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~-----g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~ 149 (1294)
T PRK11131 77 QKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR-----GVKGLIGHTQPRRLAARTVANRIAEELETELGGC 149 (1294)
T ss_pred HHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC-----CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcce
Confidence 3445566667777788999999999998 46744332211 11224555567 56888888888875 4443
Q ss_pred CCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcc-hhhcCCCHHH-HHHHHHhcCC
Q 010649 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD-RMLDMGFEPQ-IKKILSQIRP 276 (505)
Q Consensus 199 ~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah-~~~~~~~~~~-~~~il~~~~~ 276 (505)
.++.+ .... .....++|+|+||++|++.+..+. .++++++||||||| ++++.+|... +..++. .++
T Consensus 150 VGY~v-------rf~~---~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~-~rp 217 (1294)
T PRK11131 150 VGYKV-------RFND---QVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLP-RRP 217 (1294)
T ss_pred eceee-------cCcc---ccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhh-cCC
Confidence 33322 1111 113468999999999999988654 48999999999999 6888887654 333333 246
Q ss_pred CCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccCh------hHHHHHHHHHHHhh--cCCCeEE
Q 010649 277 DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE------SQKYNKLVKLLEDI--MDGSRIL 348 (505)
Q Consensus 277 ~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~k~~~l~~~l~~~--~~~~~vl 348 (505)
+.|+|+||||++. +.+.+.|...|. +.+.... ..+...+..... .+.+..+++.+..+ ...+.+|
T Consensus 218 dlKvILmSATid~--e~fs~~F~~apv-I~V~Gr~----~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdIL 290 (1294)
T PRK11131 218 DLKVIITSATIDP--ERFSRHFNNAPI-IEVSGRT----YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDIL 290 (1294)
T ss_pred CceEEEeeCCCCH--HHHHHHcCCCCE-EEEcCcc----ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEE
Confidence 8899999999974 466666655554 3332211 112333322211 23344444444332 2346899
Q ss_pred EEeCCcccHHHHHHHHHhCCCC---eEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCC----
Q 010649 349 IFMDTKKGCDQITRQLRMDGWP---ALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF---- 421 (505)
Q Consensus 349 VF~~~~~~~~~l~~~L~~~~~~---~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~---- 421 (505)
|||+++.+++.+++.|++.+++ +..+||++++++|..+++. .|..+|||||+++++|||||++++||+++.
T Consensus 291 VFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~ 368 (1294)
T PRK11131 291 IFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARIS 368 (1294)
T ss_pred EEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccc
Confidence 9999999999999999987665 6789999999999999886 578899999999999999999999999863
Q ss_pred -----------C---CChhHHHHhhcccccCCCccEEEEEecCccH
Q 010649 422 -----------P---GSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (505)
Q Consensus 422 -----------p---~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 453 (505)
| .|.++|.||+||+||. ++|.||.++++.+.
T Consensus 369 ~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 369 RYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred ccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 3 3568999999999999 79999999998653
No 78
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=3.2e-33 Score=300.03 Aligned_cols=334 Identities=16% Similarity=0.139 Sum_probs=220.9
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 010649 121 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~~--~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~ 198 (505)
.|.|||.+++..++.. ..+|+..++|.|||..+.+.+...+.. +...++|||||. .|..||..++.+.+.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~------g~~~rvLIVvP~-sL~~QW~~El~~kF~- 223 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT------GRAERVLILVPE-TLQHQWLVEMLRRFN- 223 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc------CCCCcEEEEcCH-HHHHHHHHHHHHHhC-
Confidence 6999999999887653 469999999999999987644333333 124569999998 899999999975432
Q ss_pred CCceEEEEECCCCchHHHH---HHhcCCcEEEeChHHHHHHHH-ccCCccCCccEEEEcCcchhhcCC--CHHHHHHHHH
Q 010649 199 SKIKSTCIYGGVPKGPQVR---DLQKGVEIVIATPGRLIDMLE-SHNTNLRRVTYLVLDEADRMLDMG--FEPQIKKILS 272 (505)
Q Consensus 199 ~~i~~~~~~gg~~~~~~~~---~~~~~~~Iiv~T~~~l~~~l~-~~~~~l~~~~~lVlDEah~~~~~~--~~~~~~~il~ 272 (505)
+....+.+.. ...... ......+++|+|++.+...-. .....-..+++|||||||++.... -...+..+..
T Consensus 224 --l~~~i~~~~~-~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~ 300 (956)
T PRK04914 224 --LRFSLFDEER-YAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQ 300 (956)
T ss_pred --CCeEEEcCcc-hhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHH
Confidence 3333222221 110000 111236899999987754111 011222478999999999987321 1122333322
Q ss_pred hcCCCCceEEecCCChHH-------------------HHHH-------------HH-----------------HHccCC-
Q 010649 273 QIRPDRQTLYWSATWPKE-------------------VEHL-------------AR-----------------QYLYNP- 302 (505)
Q Consensus 273 ~~~~~~~~v~~SAT~~~~-------------------~~~~-------------~~-----------------~~~~~~- 302 (505)
.......++++|||+-.. ...+ +. .++.+.
T Consensus 301 La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~ 380 (956)
T PRK04914 301 LAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQD 380 (956)
T ss_pred HhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccc
Confidence 223456889999995310 0000 00 000000
Q ss_pred --------------------------------cEEEEcCC--Cc-ccccceeeeee------------------------
Q 010649 303 --------------------------------YKVIIGSP--DL-KANHAIRQHVD------------------------ 323 (505)
Q Consensus 303 --------------------------------~~~~~~~~--~~-~~~~~~~~~~~------------------------ 323 (505)
..+.+... .. .......+.+.
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~ 460 (956)
T PRK04914 381 IEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLY 460 (956)
T ss_pred hhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcC
Confidence 00000000 00 00000000000
Q ss_pred -------------ccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHH-hCCCCeEEEcCCCCHHHHHHHHHH
Q 010649 324 -------------IVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLR-MDGWPALSIHGDKSQAERDWVLSE 389 (505)
Q Consensus 324 -------------~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~-~~~~~~~~lhg~~~~~~r~~~~~~ 389 (505)
......|...|.++++... ..|+||||+++..++.+++.|+ ..|+++..+||+|++.+|+.+++.
T Consensus 461 pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~-~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~ 539 (956)
T PRK04914 461 PEQIYQEFEDNATWWNFDPRVEWLIDFLKSHR-SEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAY 539 (956)
T ss_pred HHHHHHHHhhhhhccccCHHHHHHHHHHHhcC-CCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHH
Confidence 0112345666777776643 5699999999999999999994 679999999999999999999999
Q ss_pred HhcC--CCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHHh
Q 010649 390 FKAG--KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 466 (505)
Q Consensus 390 f~~g--~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 466 (505)
|+++ ..+|||||+++++|+|++.+++||+||+|+|+..|.||+||++|.|+++.+.+++...+......+.+.+.+.
T Consensus 540 F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~ 618 (956)
T PRK04914 540 FADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEG 618 (956)
T ss_pred HhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhh
Confidence 9984 5999999999999999999999999999999999999999999999999888777776655666666655553
No 79
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.7e-33 Score=285.03 Aligned_cols=293 Identities=24% Similarity=0.287 Sum_probs=205.6
Q ss_pred CCCcHHHHHHHHHHhc----CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010649 120 FEPTPIQAQGWPMALK----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 195 (505)
.+|+++|++++..+.. .+..++++|||+|||.+++. ++..+.. .+|||||+++|+.||++.+.++
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~-~~~~~~~----------~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAE-AIAELKR----------STLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHH-HHHHhcC----------CEEEEECcHHHHHHHHHHHHHh
Confidence 4799999999999988 88899999999999998766 3444332 2999999999999999888876
Q ss_pred cCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcC
Q 010649 196 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR 275 (505)
Q Consensus 196 ~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~ 275 (505)
.... .....+++..... .. ..|+|+|++.+.............+++||+||||++.+.. .+.+...+.
T Consensus 104 ~~~~--~~~g~~~~~~~~~-----~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~----~~~~~~~~~ 171 (442)
T COG1061 104 LLLN--DEIGIYGGGEKEL-----EP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS----YRRILELLS 171 (442)
T ss_pred cCCc--cccceecCceecc-----CC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHH----HHHHHHhhh
Confidence 5432 1223333332211 11 3699999999877521123333479999999999988654 334444443
Q ss_pred CCCceEEecCCChHHHHHH---HHHHccCCcEEEEcCCCc-----ccccceeee--------------------------
Q 010649 276 PDRQTLYWSATWPKEVEHL---ARQYLYNPYKVIIGSPDL-----KANHAIRQH-------------------------- 321 (505)
Q Consensus 276 ~~~~~v~~SAT~~~~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-------------------------- 321 (505)
....+++||||++...... ...++. +........++ ..+......
T Consensus 172 ~~~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~ 250 (442)
T COG1061 172 AAYPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRAR 250 (442)
T ss_pred cccceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhh
Confidence 3333899999976433111 111111 11111111100 000000000
Q ss_pred ----------eeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHh
Q 010649 322 ----------VDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFK 391 (505)
Q Consensus 322 ----------~~~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~ 391 (505)
........+...+..++.....+.+++|||.++.+++.++..+...+. +..+.++.+..+|..+++.|+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr 329 (442)
T COG1061 251 GTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFR 329 (442)
T ss_pred hhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHH
Confidence 000112233333444444433456999999999999999999998888 899999999999999999999
Q ss_pred cCCCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhccccc
Q 010649 392 AGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGR 437 (505)
Q Consensus 392 ~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R 437 (505)
.|.+++||++.++.+|+|+|+++++|...+..|...|+||+||..|
T Consensus 330 ~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 330 TGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred cCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 9999999999999999999999999999999999999999999999
No 80
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=2.4e-32 Score=274.17 Aligned_cols=364 Identities=20% Similarity=0.235 Sum_probs=267.3
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC------CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 010649 106 FPDYVMQEISKAGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (505)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~------~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~ 179 (505)
....+++.+.+.==++||..|++++..|... .+-+++++.|||||++++++++..+.. |.++.+++
T Consensus 247 ~~~~l~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~--------G~Q~ALMA 318 (677)
T COG1200 247 ANGELLAKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA--------GYQAALMA 318 (677)
T ss_pred ccHHHHHHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc--------CCeeEEec
Confidence 3444555554433458999999999998753 257999999999999999988888776 88899999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHH---HHHHhcC-CcEEEeChHHHHHHHHccCCccCCccEEEEcCc
Q 010649 180 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQKG-VEIVIATPGRLIDMLESHNTNLRRVTYLVLDEA 255 (505)
Q Consensus 180 Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~~~~~-~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEa 255 (505)
||.-||.|.++.+.+++...++++..++|....... ...+..+ .+|+|+| +.|.++...++++.++|+||=
T Consensus 319 PTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT-----HALiQd~V~F~~LgLVIiDEQ 393 (677)
T COG1200 319 PTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGT-----HALIQDKVEFHNLGLVIIDEQ 393 (677)
T ss_pred cHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc-----chhhhcceeecceeEEEEecc
Confidence 999999999999999999999999999998765443 3344444 8999999 555666788999999999999
Q ss_pred chhhcCCCHHHHHHHHHhcCC-CCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHH
Q 010649 256 DRMLDMGFEPQIKKILSQIRP-DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKL 334 (505)
Q Consensus 256 h~~~~~~~~~~~~~il~~~~~-~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 334 (505)
|| |+-.-+..+..-.. .+.+++||||+-+....+ ....+-..-.+...... ...+.- ..+.....-..+
T Consensus 394 HR-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAl--t~fgDldvS~IdElP~G-RkpI~T--~~i~~~~~~~v~ 463 (677)
T COG1200 394 HR-----FGVHQRLALREKGEQNPHVLVMTATPIPRTLAL--TAFGDLDVSIIDELPPG-RKPITT--VVIPHERRPEVY 463 (677)
T ss_pred cc-----ccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHH--HHhccccchhhccCCCC-CCceEE--EEeccccHHHHH
Confidence 99 45555666655555 789999999985544333 23333222222221111 112222 222333333333
Q ss_pred HHHHHhhcCCCeEEEEeCCcccH--------HHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 010649 335 VKLLEDIMDGSRILIFMDTKKGC--------DQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVA 404 (505)
Q Consensus 335 ~~~l~~~~~~~~vlVF~~~~~~~--------~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~ 404 (505)
..+-+++.++.++.|.|+-+++. ..++..|+.. ++.+..+||.|+.+++++++++|++|+++|||||.++
T Consensus 464 e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVI 543 (677)
T COG1200 464 ERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVI 543 (677)
T ss_pred HHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEE
Confidence 34445566788999999887654 4556666643 5668999999999999999999999999999999999
Q ss_pred cccCCCCCCCEEEEcCCC-CChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHHhCCCCCHHHHHhhcCCCC
Q 010649 405 ARGLDVKDVKYVINYDFP-GSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAMGRGAPP 483 (505)
Q Consensus 405 ~~Gidi~~~~~Vi~~~~p-~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~~~ 483 (505)
+.|||+|+++++|+.+.- .-.++.-|-.||+||.+..+.|++++.+...+..+.-++++++...-+-=.=+++ .-+|
T Consensus 544 EVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~DGF~IAE~DL--klRG 621 (677)
T COG1200 544 EVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETTDGFVIAEEDL--KLRG 621 (677)
T ss_pred EecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhcCCcceehhhhH--hccC
Confidence 999999999999988754 3578999999999999999999999999876777777777777654332111122 2355
Q ss_pred CCCCCCCCcCC
Q 010649 484 SSAGHGGFRDR 494 (505)
Q Consensus 484 ~~~~~~~~~~~ 494 (505)
.|--.|..+++
T Consensus 622 pGe~lG~rQSG 632 (677)
T COG1200 622 PGELLGTRQSG 632 (677)
T ss_pred CccccCCcccC
Confidence 55555556553
No 81
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=7.2e-34 Score=266.25 Aligned_cols=330 Identities=22% Similarity=0.359 Sum_probs=243.1
Q ss_pred HHHHHHHH-cCCC-CCcHHHHHHHHHHhcC-CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHH
Q 010649 109 YVMQEISK-AGFF-EPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (505)
Q Consensus 109 ~~~~~l~~-~~~~-~~~~~Q~~~i~~~l~~-~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La 185 (505)
.+.++|++ .|+. .-++.|++|+..+.++ .|+.+++|||+||+++|.+|+|.+ +...||++|..+|.
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiALI 74 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIALI 74 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHHH
Confidence 34455554 3443 3488999999998765 689999999999999999999876 44799999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEECCCCchHH---HHHHh---cCCcEEEeChHHHH-----HHHHccCCccCCccEEEEcC
Q 010649 186 VQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQ---KGVEIVIATPGRLI-----DMLESHNTNLRRVTYLVLDE 254 (505)
Q Consensus 186 ~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~~~---~~~~Iiv~T~~~l~-----~~l~~~~~~l~~~~~lVlDE 254 (505)
..+.+-+.++. +.+..+....+..+. +.++. ....++..||+... ++|+. ..+-..+.++|+||
T Consensus 75 kDQiDHL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~-L~~r~~L~Y~vVDE 149 (641)
T KOG0352|consen 75 KDQIDHLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG-LANRDVLRYIVVDE 149 (641)
T ss_pred HHHHHHHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH-HhhhceeeeEEech
Confidence 88888877753 344444444333322 23332 34679999998742 23322 22234578999999
Q ss_pred cchhhcCC--CHHHHHHH--HHhcCCCCceEEecCCChHHHHHHHHH--HccCCcEEEEcCCCcccccceeeeeec-cCh
Q 010649 255 ADRMLDMG--FEPQIKKI--LSQIRPDRQTLYWSATWPKEVEHLARQ--YLYNPYKVIIGSPDLKANHAIRQHVDI-VSE 327 (505)
Q Consensus 255 ah~~~~~~--~~~~~~~i--l~~~~~~~~~v~~SAT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 327 (505)
||.+.+++ |.+.+.++ ++..-++...|.+|||....+++.+-. .+.+|+.+.-. +.. ..++-..+.+ ..-
T Consensus 150 AHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkT-P~F--R~NLFYD~~~K~~I 226 (641)
T KOG0352|consen 150 AHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKT-PTF--RDNLFYDNHMKSFI 226 (641)
T ss_pred hhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccC-cch--hhhhhHHHHHHHHh
Confidence 99999987 77777665 333347888999999999888775443 34556554322 111 1111111100 011
Q ss_pred hHHHHHHHHHHHhhcC------------CCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCC
Q 010649 328 SQKYNKLVKLLEDIMD------------GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS 395 (505)
Q Consensus 328 ~~k~~~l~~~l~~~~~------------~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~ 395 (505)
++-+..|.++-..... .+-.||||.|+++|+.++-.|...|+++..+|.++...+|.++.++|-+++.
T Consensus 227 ~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~ 306 (641)
T KOG0352|consen 227 TDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEI 306 (641)
T ss_pred hhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCC
Confidence 2334444444332211 1257999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHH
Q 010649 396 PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAK 457 (505)
Q Consensus 396 ~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~ 457 (505)
+|++||..++.|+|-|+|++|||+++|.|+.-|.|-.||+||.|....|-+++..+|...+.
T Consensus 307 PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~ 368 (641)
T KOG0352|consen 307 PVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALN 368 (641)
T ss_pred CEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999988765443
No 82
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=2e-33 Score=259.73 Aligned_cols=334 Identities=21% Similarity=0.334 Sum_probs=263.4
Q ss_pred CCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEccc
Q 010649 103 DVGFPDYVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (505)
Q Consensus 103 ~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt 181 (505)
+++.+.+..+.|+. .....++|.|..+|+..+.+++++++.|||.||+++|.+|++.. ...+||+||.
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----------dg~alvi~pl 143 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----------DGFALVICPL 143 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----------CCceEeechh
Confidence 45666777777764 45677899999999999999999999999999999999999865 4459999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHH---HH---hcCCcEEEeChHHHHH---HHHc--cCCccCCccEE
Q 010649 182 RELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DL---QKGVEIVIATPGRLID---MLES--HNTNLRRVTYL 250 (505)
Q Consensus 182 ~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~~---~~~~~Iiv~T~~~l~~---~l~~--~~~~l~~~~~l 250 (505)
.+|.+.+.-+++.++ +....+....++.+..+ .+ .....++..||+++.. ++.+ +......++++
T Consensus 144 islmedqil~lkqlg----i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~i 219 (695)
T KOG0353|consen 144 ISLMEDQILQLKQLG----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLI 219 (695)
T ss_pred HHHHHHHHHHHHHhC----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEE
Confidence 999998888888876 33333433333322211 11 1235789999998743 2221 23445678999
Q ss_pred EEcCcchhhcCC--CHHHHHH--HHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeee--c
Q 010649 251 VLDEADRMLDMG--FEPQIKK--ILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVD--I 324 (505)
Q Consensus 251 VlDEah~~~~~~--~~~~~~~--il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 324 (505)
.+||+|++.+++ |.+.+.. ++..--+...++++|||..+.+...++..+.-...+.+..... ..++...+. .
T Consensus 220 aidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fn--r~nl~yev~qkp 297 (695)
T KOG0353|consen 220 AIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFN--RPNLKYEVRQKP 297 (695)
T ss_pred eecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccC--CCCceeEeeeCC
Confidence 999999999886 6665543 4555557889999999999998888888776554444443321 223333332 2
Q ss_pred cChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 010649 325 VSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVA 404 (505)
Q Consensus 325 ~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~ 404 (505)
.++.+-.+.+..+++....+...||||-+.+.|+.++..|+..|+.+..+|..|.++++.-+-+.|-.|++.|+|||-++
T Consensus 298 ~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvaf 377 (695)
T KOG0353|consen 298 GNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAF 377 (695)
T ss_pred CChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeee
Confidence 34556677778888777777889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCEEEEcCCCCChhHHHH-------------------------------------------hhcccccCCCc
Q 010649 405 ARGLDVKDVKYVINYDFPGSLEDYVH-------------------------------------------RIGRTGRAGAK 441 (505)
Q Consensus 405 ~~Gidi~~~~~Vi~~~~p~s~~~~~Q-------------------------------------------r~GR~~R~g~~ 441 (505)
+.|||-|+|++|||..+|.|++.|.| -.||+||.+.+
T Consensus 378 gmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~ 457 (695)
T KOG0353|consen 378 GMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMK 457 (695)
T ss_pred cccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCc
Confidence 99999999999999999999999999 67999999999
Q ss_pred cEEEEEecCccH
Q 010649 442 GTAYTFFTAANA 453 (505)
Q Consensus 442 g~~~~~~~~~~~ 453 (505)
..|++++--.|.
T Consensus 458 a~cilyy~~~di 469 (695)
T KOG0353|consen 458 ADCILYYGFADI 469 (695)
T ss_pred ccEEEEechHHH
Confidence 999999987653
No 83
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=5.5e-33 Score=288.99 Aligned_cols=346 Identities=19% Similarity=0.254 Sum_probs=256.0
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCC---CCCCEEEEEcc
Q 010649 105 GFPDYVMQEISKAGFFEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAP---GDGPIVLVLAP 180 (505)
Q Consensus 105 ~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~-~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~---~~~~~vlil~P 180 (505)
.+|++-..++. |..++.++|....+.++.+ .++++|||||+|||.++++.+++.+........ -...++++++|
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 46777766663 4556999999999999876 579999999999999999999999887643221 12457999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccC---CccCCccEEEEcCcch
Q 010649 181 TRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN---TNLRRVTYLVLDEADR 257 (505)
Q Consensus 181 t~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~---~~l~~~~~lVlDEah~ 257 (505)
.++|++.|...+.+.....++.|...+|+.....+.. ...+|+||||+++ |.+.++. ...+-+.++|+||+|.
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qi---eeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHL 448 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQI---EETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHL 448 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEecccccchhhhh---hcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhh
Confidence 9999999999999988999999999999876544332 2468999999998 6665542 2344578999999997
Q ss_pred hhcCCCHHHHHHHHHhc-------CCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHH
Q 010649 258 MLDMGFEPQIKKILSQI-------RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQK 330 (505)
Q Consensus 258 ~~~~~~~~~~~~il~~~-------~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 330 (505)
+-|. .++.++.++... ....+++++|||+|+ ..+.+.....++..+..- .....+..+.|.+.-+.+...
T Consensus 449 LhDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPN-y~DV~~Fl~v~~~glf~f-d~syRpvPL~qq~Igi~ek~~ 525 (1674)
T KOG0951|consen 449 LHDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPN-YEDVASFLRVDPEGLFYF-DSSYRPVPLKQQYIGITEKKP 525 (1674)
T ss_pred cccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCc-hhhhHHHhccCccccccc-CcccCcCCccceEeccccCCc
Confidence 7665 478887776554 246899999999997 555555555555332222 222344556666554443222
Q ss_pred ---HH----HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHh-------------------------------------
Q 010649 331 ---YN----KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM------------------------------------- 366 (505)
Q Consensus 331 ---~~----~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~------------------------------------- 366 (505)
.+ .+.+-+-++...++|||||.+++++.+.|+.++.
T Consensus 526 ~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdL 605 (1674)
T KOG0951|consen 526 LKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDL 605 (1674)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHH
Confidence 12 2223333333447999999999998887777752
Q ss_pred CCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEE----EcCC------CCChhHHHHhhcccc
Q 010649 367 DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI----NYDF------PGSLEDYVHRIGRTG 436 (505)
Q Consensus 367 ~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi----~~~~------p~s~~~~~Qr~GR~~ 436 (505)
..+.+..+|++|+..+|..+.+.|.+|+++|||+|..+++|+|+|..+++| -||+ +-++.+.+||+||+|
T Consensus 606 LpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgrag 685 (1674)
T KOG0951|consen 606 LPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAG 685 (1674)
T ss_pred hhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcC
Confidence 124567899999999999999999999999999999999999999988888 3554 337899999999999
Q ss_pred cCCCc--cEEEEEecCccHHHHHHH
Q 010649 437 RAGAK--GTAYTFFTAANARFAKEL 459 (505)
Q Consensus 437 R~g~~--g~~~~~~~~~~~~~~~~l 459 (505)
|.+.+ |..+++...++..+..++
T Consensus 686 rp~~D~~gegiiit~~se~qyyls~ 710 (1674)
T KOG0951|consen 686 RPQYDTCGEGIIITDHSELQYYLSL 710 (1674)
T ss_pred CCccCcCCceeeccCchHhhhhHHh
Confidence 97654 666666666555444443
No 84
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=4.6e-31 Score=279.98 Aligned_cols=314 Identities=19% Similarity=0.192 Sum_probs=218.5
Q ss_pred CCCcHHHHHHHHHHhcC---CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 120 FEPTPIQAQGWPMALKG---RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~---~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
..|++.|+++++.+.++ +++++.++||||||.+|+.++...+.. +.++|||+|+++|+.|+.+.+++.+
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~--------g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ--------GKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 36899999999999874 789999999999999998876665543 6789999999999999999998854
Q ss_pred CCCCceEEEEECCCCchHHHHH---H-hcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCC---HHHHH-
Q 010649 197 ASSKIKSTCIYGGVPKGPQVRD---L-QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF---EPQIK- 268 (505)
Q Consensus 197 ~~~~i~~~~~~gg~~~~~~~~~---~-~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~---~~~~~- 268 (505)
+..+..++++.+..+.... + ....+|+|+|++.+. ..+.++++||+||+|....... ....+
T Consensus 215 ---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~ 284 (679)
T PRK05580 215 ---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARD 284 (679)
T ss_pred ---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHH
Confidence 3578889998776544332 2 235799999998763 4477899999999997653321 11112
Q ss_pred -HHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccCh------hHHHHHHHHHHHhh
Q 010649 269 -KILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE------SQKYNKLVKLLEDI 341 (505)
Q Consensus 269 -~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~k~~~l~~~l~~~ 341 (505)
.++.....+.+++++|||++.+....+.. .....+.+..............+..... ..--..+.+.+++.
T Consensus 285 va~~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~ 362 (679)
T PRK05580 285 LAVVRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQR 362 (679)
T ss_pred HHHHHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHH
Confidence 23334457889999999987655444321 1111111111110000111111111100 00113344444443
Q ss_pred -cCCCeEEEEeCCcc------------------------------------------------------------cHHHH
Q 010649 342 -MDGSRILIFMDTKK------------------------------------------------------------GCDQI 360 (505)
Q Consensus 342 -~~~~~vlVF~~~~~------------------------------------------------------------~~~~l 360 (505)
..+.++|||+|.+. .++.+
T Consensus 363 l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~ 442 (679)
T PRK05580 363 LERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERL 442 (679)
T ss_pred HHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHH
Confidence 34558999988632 34677
Q ss_pred HHHHHhC--CCCeEEEcCCCC--HHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCC--CCC----------
Q 010649 361 TRQLRMD--GWPALSIHGDKS--QAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF--PGS---------- 424 (505)
Q Consensus 361 ~~~L~~~--~~~~~~lhg~~~--~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~--p~s---------- 424 (505)
++.|++. +.++..+|+++. ..+++.++++|++|+.+|||+|+++++|+|+|++++|+.+|. +-+
T Consensus 443 ~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~ 522 (679)
T PRK05580 443 EEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERT 522 (679)
T ss_pred HHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHH
Confidence 7888774 778999999986 467999999999999999999999999999999999865544 322
Q ss_pred hhHHHHhhcccccCCCccEEEEEecCccH
Q 010649 425 LEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (505)
Q Consensus 425 ~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 453 (505)
.+.|.|++||+||.+..|.+++.....+.
T Consensus 523 ~~~l~q~~GRagR~~~~g~viiqT~~p~~ 551 (679)
T PRK05580 523 FQLLTQVAGRAGRAEKPGEVLIQTYHPEH 551 (679)
T ss_pred HHHHHHHHhhccCCCCCCEEEEEeCCCCC
Confidence 36799999999999999999976655443
No 85
>PRK09694 helicase Cas3; Provisional
Probab=100.00 E-value=3.5e-31 Score=282.69 Aligned_cols=353 Identities=20% Similarity=0.239 Sum_probs=226.8
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 010649 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (505)
Q Consensus 119 ~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~ 198 (505)
..+|+|+|+.+........-+++.||||+|||.+++.++...+.. +....++|..||+++++|+++.+.++...
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~------~~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ------GLADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh------CCCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 458999999886554445668999999999999988765543322 12467999999999999999998764321
Q ss_pred --CCceEEEEECCCCchHHHH--------------------H-Hh---c---CCcEEEeChHHHHHHHH-ccCCccCCc-
Q 010649 199 --SKIKSTCIYGGVPKGPQVR--------------------D-LQ---K---GVEIVIATPGRLIDMLE-SHNTNLRRV- 247 (505)
Q Consensus 199 --~~i~~~~~~gg~~~~~~~~--------------------~-~~---~---~~~Iiv~T~~~l~~~l~-~~~~~l~~~- 247 (505)
....+...+|......... . +. + -.+|+|||..+++..+. .+...++.+
T Consensus 358 ~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 358 LFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred hcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 1235666666543221100 0 11 1 16899999988775433 333333333
Q ss_pred ---cEEEEcCcchhhcCCCHHHHHHHHHhc-CCCCceEEecCCChHHHHHH-HHHHccC-C------cEEE--EcCC---
Q 010649 248 ---TYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTLYWSATWPKEVEHL-ARQYLYN-P------YKVI--IGSP--- 310 (505)
Q Consensus 248 ---~~lVlDEah~~~~~~~~~~~~~il~~~-~~~~~~v~~SAT~~~~~~~~-~~~~~~~-~------~~~~--~~~~--- 310 (505)
++|||||+|.+-. .....+..+++.+ .....+|+||||+|....+. .+.+-.. + +... ....
T Consensus 438 La~svvIiDEVHAyD~-ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 438 LGRSVLIVDEVHAYDA-YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred hccCeEEEechhhCCH-HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 4899999998633 2244555555544 34677999999999877653 3333211 0 0000 0000
Q ss_pred C--ccc-----ccceeeeeecc--Ch-hHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCC---CCeEEEcCC
Q 010649 311 D--LKA-----NHAIRQHVDIV--SE-SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDG---WPALSIHGD 377 (505)
Q Consensus 311 ~--~~~-----~~~~~~~~~~~--~~-~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~---~~~~~lhg~ 377 (505)
. ... .......+... .. ......+..+++....++++||||||++.|..+++.|++.. .++..+|+.
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsr 596 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHAR 596 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCC
Confidence 0 000 00011111111 11 11222333344444567799999999999999999998764 679999999
Q ss_pred CCHHHH----HHHHHHH-hcCC---CcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCc----c---
Q 010649 378 KSQAER----DWVLSEF-KAGK---SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAK----G--- 442 (505)
Q Consensus 378 ~~~~~r----~~~~~~f-~~g~---~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~----g--- 442 (505)
++..+| +++++.| ++++ ..|||||+++++|||| +++++|....| .+.++||+||++|.+.. |
T Consensus 597 f~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~~rp~~~~~ 673 (878)
T PRK09694 597 FTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRKYRPAGFEI 673 (878)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCCCCCCCCcC
Confidence 999999 4677788 6665 4699999999999999 68999998888 78999999999998753 2
Q ss_pred -EEEEEecC-----------ccHHHHHHHHHHHHHhC---CCCCHHHHHhhcCC
Q 010649 443 -TAYTFFTA-----------ANARFAKELITILEEAG---QKVSPELAAMGRGA 481 (505)
Q Consensus 443 -~~~~~~~~-----------~~~~~~~~l~~~l~~~~---~~i~~~l~~~~~~~ 481 (505)
.++++... .+...+..-...|.+.+ ..+|+....+.+..
T Consensus 674 p~~~V~~p~~~~~~~~~~VY~~~~~L~rT~~~L~~~~~~~~~~P~~~~~lve~v 727 (878)
T PRK09694 674 PVATVLLPDGEGYGRSGYIYGNTRVLWRTEQLLEEHNAASLFFPDAYREWIESV 727 (878)
T ss_pred ceEEEEeccccccCCceeecCchHHHHHHHHHHHhcCCCCcCChHHHHHHHHHH
Confidence 23333221 12223333345666664 56899888888743
No 86
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.8e-31 Score=291.31 Aligned_cols=302 Identities=22% Similarity=0.278 Sum_probs=212.2
Q ss_pred HHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEE
Q 010649 127 AQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCI 206 (505)
Q Consensus 127 ~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~ 206 (505)
.+.+..+..++.+|++|+||||||+. +|.+..-.. .+...++++..|.|.-|..+++.+.+... ..+...
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~-----~~~~~~I~~tQPRRlAA~svA~RvA~elg---~~lG~~ 142 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELG-----RGSHGLIGHTQPRRLAARTVAQRIAEELG---TPLGEK 142 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcC-----CCCCceEecCCccHHHHHHHHHHHHHHhC---CCcceE
Confidence 45556666777899999999999984 565433221 11234677788988777766666554322 223333
Q ss_pred ECCC-CchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcc-hhhcCCCHHH-HHHHHHhcCCCCceEEe
Q 010649 207 YGGV-PKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD-RMLDMGFEPQ-IKKILSQIRPDRQTLYW 283 (505)
Q Consensus 207 ~gg~-~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah-~~~~~~~~~~-~~~il~~~~~~~~~v~~ 283 (505)
+|.. ....+ ......|.++|++.|++.+..+. .+.++++||||||| ++++.+|... ++.++. .+++.++|+|
T Consensus 143 VGY~vR~~~~---~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~-~rpdLKlIlm 217 (1283)
T TIGR01967 143 VGYKVRFHDQ---VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLP-RRPDLKIIIT 217 (1283)
T ss_pred EeeEEcCCcc---cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHh-hCCCCeEEEE
Confidence 3321 11111 13457899999999999887654 58999999999999 6888887765 455543 4578999999
Q ss_pred cCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccC------hhHHHHHHHHHHHhhc--CCCeEEEEeCCcc
Q 010649 284 SATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS------ESQKYNKLVKLLEDIM--DGSRILIFMDTKK 355 (505)
Q Consensus 284 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~k~~~l~~~l~~~~--~~~~vlVF~~~~~ 355 (505)
|||++. ..+.+.|...|+ +.+.... ..+...+.... ..++...+...+.... ..+.+|||++++.
T Consensus 218 SATld~--~~fa~~F~~apv-I~V~Gr~----~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~ 290 (1283)
T TIGR01967 218 SATIDP--ERFSRHFNNAPI-IEVSGRT----YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGER 290 (1283)
T ss_pred eCCcCH--HHHHHHhcCCCE-EEECCCc----ccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHH
Confidence 999964 567666655554 3332211 11222222111 1234455555554432 3468999999999
Q ss_pred cHHHHHHHHHhCC---CCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCC----------
Q 010649 356 GCDQITRQLRMDG---WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFP---------- 422 (505)
Q Consensus 356 ~~~~l~~~L~~~~---~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p---------- 422 (505)
+++.+++.|++.+ +.+..+||++++++|..+++.+ +..+|||||+++++|||||++++||+++++
T Consensus 291 EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~ 368 (1283)
T TIGR01967 291 EIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTK 368 (1283)
T ss_pred HHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccC
Confidence 9999999998764 4578899999999999986654 246899999999999999999999999854
Q ss_pred --------CChhHHHHhhcccccCCCccEEEEEecCccH
Q 010649 423 --------GSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (505)
Q Consensus 423 --------~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 453 (505)
-|.++|.||.||+||.+ +|.||.++++.+.
T Consensus 369 ~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 369 VQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred ccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 26689999999999996 9999999997654
No 87
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=4.3e-31 Score=242.31 Aligned_cols=202 Identities=52% Similarity=0.868 Sum_probs=184.5
Q ss_pred CcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc
Q 010649 101 FRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (505)
Q Consensus 101 f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P 180 (505)
|+++++++.+.+.+...++..|+++|.++++.+++++++++++|||+|||++|++|++.++.... ...+++++|++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~---~~~~~~viii~p 77 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP---KKDGPQALILAP 77 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---ccCCceEEEEcC
Confidence 67889999999999999999999999999999999999999999999999999999999888742 124788999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhc
Q 010649 181 TRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 260 (505)
Q Consensus 181 t~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~ 260 (505)
+++|+.|+.+.+..+....++.+..++|+.........+..+++|+|+||++|.+++.+....+.+++++|+||+|.+.+
T Consensus 78 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~ 157 (203)
T cd00268 78 TRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD 157 (203)
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc
Confidence 99999999999999988778899999999887777666666899999999999999988878889999999999999999
Q ss_pred CCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEE
Q 010649 261 MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKV 305 (505)
Q Consensus 261 ~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~ 305 (505)
.++...+..++..++...+++++|||+++.+..++..++.+|+.+
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 158 MGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred cChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 889999999999999999999999999999999999999888764
No 88
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.98 E-value=1.4e-29 Score=267.76 Aligned_cols=323 Identities=22% Similarity=0.252 Sum_probs=252.2
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc----C--CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010649 105 GFPDYVMQEISKAGFFEPTPIQAQGWPMALK----G--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (505)
Q Consensus 105 ~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~----~--~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil 178 (505)
+.+....+.+...--++-||-|..||..++. + -|-++|++.|-|||.+|+-+++..+.. +++|.||
T Consensus 578 ~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~--------GKQVAvL 649 (1139)
T COG1197 578 PPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD--------GKQVAVL 649 (1139)
T ss_pred CCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC--------CCeEEEE
Confidence 3456666777655445889999999999874 3 368999999999999999988888776 8999999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHH---HHh-cCCcEEEeChHHHHHHHHccCCccCCccEEEEcC
Q 010649 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDE 254 (505)
Q Consensus 179 ~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDE 254 (505)
|||.-||+|-++.|++-+...++++..+.--.+..++.. .+. ...||+|+| +.|-++...++++.+||+||
T Consensus 650 VPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~FkdLGLlIIDE 724 (1139)
T COG1197 650 VPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKDLGLLIIDE 724 (1139)
T ss_pred cccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEecCCeEEEec
Confidence 999999999999999988898999988776655555533 333 348999999 55556678899999999999
Q ss_pred cchhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHH
Q 010649 255 ADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKL 334 (505)
Q Consensus 255 ah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 334 (505)
-|+ |+-.-+.-++.++.+.-++-||||+-+....++-.-+.+-- ++...+ .....+.-++ .+.+....=
T Consensus 725 EqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlS-vI~TPP--~~R~pV~T~V---~~~d~~~ir 793 (1139)
T COG1197 725 EQR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLS-VIATPP--EDRLPVKTFV---SEYDDLLIR 793 (1139)
T ss_pred hhh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhh-hccCCC--CCCcceEEEE---ecCChHHHH
Confidence 999 55566677788889999999999985555444433333322 111111 1111222222 222222223
Q ss_pred HHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCC
Q 010649 335 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD 412 (505)
Q Consensus 335 ~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~ 412 (505)
..+++++..++++-..+|..+..+.++..|++. ..++.+.||.|+..+-+.++.+|.+|+.+|||||.+++.|||||+
T Consensus 794 eAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPn 873 (1139)
T COG1197 794 EAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPN 873 (1139)
T ss_pred HHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCC
Confidence 334566777889999999999999999999985 566889999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCC-CChhHHHHhhcccccCCCccEEEEEecCc
Q 010649 413 VKYVINYDFP-GSLEDYVHRIGRTGRAGAKGTAYTFFTAA 451 (505)
Q Consensus 413 ~~~Vi~~~~p-~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 451 (505)
++.+|..+.. .-.++..|..||+||..+.+.||.++.+.
T Consensus 874 ANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 874 ANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred CceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 9998876654 36899999999999999999999999865
No 89
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.98 E-value=4.2e-30 Score=268.82 Aligned_cols=317 Identities=17% Similarity=0.204 Sum_probs=226.8
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCc
Q 010649 122 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 201 (505)
Q Consensus 122 ~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i 201 (505)
++|+-.|.+-.+.-++.-|+.++||+|||++|.+|++.++.. +..|+||+||++||.|.++++..+....++
T Consensus 81 ~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~--------G~~V~VvTpn~yLA~qd~e~m~~l~~~lGL 152 (896)
T PRK13104 81 LRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAIS--------GRGVHIVTVNDYLAKRDSQWMKPIYEFLGL 152 (896)
T ss_pred CCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 344444444443334556899999999999999999988765 455999999999999999999999999999
Q ss_pred eEEEEECCCCchHHHHHHhcCCcEEEeChHHH-HHHHHcc-CCcc-----CCccEEEEcCcchhhc-C------------
Q 010649 202 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH-NTNL-----RRVTYLVLDEADRMLD-M------------ 261 (505)
Q Consensus 202 ~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~-~~~l-----~~~~~lVlDEah~~~~-~------------ 261 (505)
.+.+++|+.+........ .++|+++||++| .+++... ..++ ..+.++||||||.|+- .
T Consensus 153 tv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~ 230 (896)
T PRK13104 153 TVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAE 230 (896)
T ss_pred eEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCc
Confidence 999999998776554433 589999999999 8888765 3333 5899999999998651 1
Q ss_pred ---CCHHHHHHHHHhcCCC--------------CceEEec----------------------------------------
Q 010649 262 ---GFEPQIKKILSQIRPD--------------RQTLYWS---------------------------------------- 284 (505)
Q Consensus 262 ---~~~~~~~~il~~~~~~--------------~~~v~~S---------------------------------------- 284 (505)
.....+..++..+... .+.+.+|
T Consensus 231 ~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~ 310 (896)
T PRK13104 231 DSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALK 310 (896)
T ss_pred cchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHH
Confidence 0112222222222211 1222222
Q ss_pred ----------------------------------------------------------------------------CCCh
Q 010649 285 ----------------------------------------------------------------------------ATWP 288 (505)
Q Consensus 285 ----------------------------------------------------------------------------AT~~ 288 (505)
+|..
T Consensus 311 A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~ 390 (896)
T PRK13104 311 AHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTAD 390 (896)
T ss_pred HHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCCh
Confidence 2222
Q ss_pred HHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhC
Q 010649 289 KEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMD 367 (505)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~vlVF~~~~~~~~~l~~~L~~~ 367 (505)
.+..++..-|..+.+.+.... .................|...+.+.+.+. ..+.|+||||+|++.++.++..|.+.
T Consensus 391 te~~Ef~~iY~l~Vv~IPtnk---p~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~ 467 (896)
T PRK13104 391 TEAYEFQQIYNLEVVVIPTNR---SMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKE 467 (896)
T ss_pred hHHHHHHHHhCCCEEECCCCC---CcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHc
Confidence 212222111111111000000 00000111223345677888887777654 45669999999999999999999999
Q ss_pred CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCC----------------------------------
Q 010649 368 GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV---------------------------------- 413 (505)
Q Consensus 368 ~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~---------------------------------- 413 (505)
++++..+|+.+.+.++..+.++|+.|. |+|||++++||+||.=-
T Consensus 468 gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 545 (896)
T PRK13104 468 NIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVI 545 (896)
T ss_pred CCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHH
Confidence 999999999999999999999999995 99999999999998621
Q ss_pred ----CEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccH
Q 010649 414 ----KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (505)
Q Consensus 414 ----~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 453 (505)
=+||-...+.|..--.|-.||+||.|.+|.+-.|++-.|.
T Consensus 546 ~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 546 AAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred HcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 1677788888999999999999999999999999987764
No 90
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.2e-29 Score=265.26 Aligned_cols=316 Identities=20% Similarity=0.240 Sum_probs=236.4
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010649 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~ 200 (505)
.|++.|.-+.-.+.+| -|+.++||+|||++|.+|++...+. +..|-|++||..||.|.++++..+....+
T Consensus 81 ~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l~~~LG 150 (830)
T PRK12904 81 RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPLYEFLG 150 (830)
T ss_pred CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHHhhcC
Confidence 6777777776555444 5999999999999999999755554 34488999999999999999999999999
Q ss_pred ceEEEEECCCCchHHHHHHhcCCcEEEeChHHH-HHHHHccC------CccCCccEEEEcCcchhhc-C-----------
Q 010649 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESHN------TNLRRVTYLVLDEADRMLD-M----------- 261 (505)
Q Consensus 201 i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~~------~~l~~~~~lVlDEah~~~~-~----------- 261 (505)
+.+.++.++.+...+.... .++|+++|+..| .+++.... ..++.+.++||||||.|+= .
T Consensus 151 lsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~ 228 (830)
T PRK12904 151 LSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPA 228 (830)
T ss_pred CeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCC
Confidence 9999999998876655543 489999999999 88887543 2367899999999998651 0
Q ss_pred ----CCHHHHHHHHHhcCCC------------------------------------------------------------
Q 010649 262 ----GFEPQIKKILSQIRPD------------------------------------------------------------ 277 (505)
Q Consensus 262 ----~~~~~~~~il~~~~~~------------------------------------------------------------ 277 (505)
.....+..++..+..+
T Consensus 229 ~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYi 308 (830)
T PRK12904 229 EDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYI 308 (830)
T ss_pred CcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEE
Confidence 0112222222222110
Q ss_pred ---------------------------------------------------------CceEEecCCChHHHHHHHHHHcc
Q 010649 278 ---------------------------------------------------------RQTLYWSATWPKEVEHLARQYLY 300 (505)
Q Consensus 278 ---------------------------------------------------------~~~v~~SAT~~~~~~~~~~~~~~ 300 (505)
..+.+||+|...+..++.+.|..
T Consensus 309 V~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l 388 (830)
T PRK12904 309 VKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNL 388 (830)
T ss_pred EECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCC
Confidence 13445555555444444444433
Q ss_pred CCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCC
Q 010649 301 NPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 379 (505)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~ 379 (505)
+-..+....+ ................|...+.+.+.+. ..+.++||||+|+..++.++..|.+.++++..+|+.
T Consensus 389 ~vv~IPtnkp---~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak-- 463 (830)
T PRK12904 389 DVVVIPTNRP---MIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK-- 463 (830)
T ss_pred CEEEcCCCCC---eeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--
Confidence 3222111110 0000112233446678899999888763 445699999999999999999999999999999995
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcccccccCCCCCC--------------------------------------CEEEEcCC
Q 010649 380 QAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV--------------------------------------KYVINYDF 421 (505)
Q Consensus 380 ~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~--------------------------------------~~Vi~~~~ 421 (505)
+.+|+..+.+|..+...|+|||++++||+||+-- =+||-...
T Consensus 464 q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTer 543 (830)
T PRK12904 464 NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTER 543 (830)
T ss_pred hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEeccc
Confidence 7899999999999999999999999999999742 16888888
Q ss_pred CCChhHHHHhhcccccCCCccEEEEEecCccH
Q 010649 422 PGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (505)
Q Consensus 422 p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 453 (505)
+.|..--.|-.||+||.|.+|.+-.|++-+|.
T Consensus 544 hesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 544 HESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred CchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 99999999999999999999999999988764
No 91
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=2.8e-29 Score=257.23 Aligned_cols=290 Identities=21% Similarity=0.263 Sum_probs=194.5
Q ss_pred EEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHH---
Q 010649 140 IGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV--- 216 (505)
Q Consensus 140 li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~--- 216 (505)
++.++||||||.+|+..+ ..+... +.++||++|+++|+.|+.+.+++.+ +..+..++++.+..+..
T Consensus 1 LL~g~TGsGKT~v~l~~i-~~~l~~-------g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~ 69 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAI-EKVLAL-------GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAW 69 (505)
T ss_pred CccCCCCCCHHHHHHHHH-HHHHHc-------CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHH
Confidence 478999999999987654 443332 6789999999999999999998754 25677888887655442
Q ss_pred HHHh-cCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCC-----CH-HHHHHHHHhcCCCCceEEecCCChH
Q 010649 217 RDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-----FE-PQIKKILSQIRPDRQTLYWSATWPK 289 (505)
Q Consensus 217 ~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~-----~~-~~~~~il~~~~~~~~~v~~SAT~~~ 289 (505)
..+. ..++|+|+|+..+. ..+.++++|||||+|.....+ |. ..+ .++.....+.++|++|||++.
T Consensus 70 ~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~-a~~ra~~~~~~vil~SATPsl 141 (505)
T TIGR00595 70 RKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDV-AVYRAKKFNCPVVLGSATPSL 141 (505)
T ss_pred HHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHH-HHHHHHhcCCCEEEEeCCCCH
Confidence 2232 35799999998763 347789999999999876322 11 122 223333468899999999775
Q ss_pred HHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChh---HHHHHHHHHHHh-hcCCCeEEEEeCCccc---------
Q 010649 290 EVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSES---QKYNKLVKLLED-IMDGSRILIFMDTKKG--------- 356 (505)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~~l~~-~~~~~~vlVF~~~~~~--------- 356 (505)
+....+.. .....+.+............+.+...... .--..+++.+++ +..++++|||+|++..
T Consensus 142 es~~~~~~--g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~C 219 (505)
T TIGR00595 142 ESYHNAKQ--KAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSC 219 (505)
T ss_pred HHHHHHhc--CCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhC
Confidence 54433321 11111111110000011111111111111 111234444444 3445689999887653
Q ss_pred ---------------------------------------------------HHHHHHHHHhC--CCCeEEEcCCCCHHHH
Q 010649 357 ---------------------------------------------------CDQITRQLRMD--GWPALSIHGDKSQAER 383 (505)
Q Consensus 357 ---------------------------------------------------~~~l~~~L~~~--~~~~~~lhg~~~~~~r 383 (505)
.+.+++.|++. +.++..+|++++..++
T Consensus 220 g~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~ 299 (505)
T TIGR00595 220 GYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKG 299 (505)
T ss_pred cCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCcc
Confidence 37778888775 6789999999987665
Q ss_pred --HHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCC------------ChhHHHHhhcccccCCCccEEEEEec
Q 010649 384 --DWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPG------------SLEDYVHRIGRTGRAGAKGTAYTFFT 449 (505)
Q Consensus 384 --~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~------------s~~~~~Qr~GR~~R~g~~g~~~~~~~ 449 (505)
+.+++.|++|+.+|||+|+++++|+|+|++++|+.++... ..+.|.|++||+||.+..|.+++...
T Consensus 300 ~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~ 379 (505)
T TIGR00595 300 AHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTY 379 (505)
T ss_pred HHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeC
Confidence 8999999999999999999999999999999886444321 24678999999999999998886543
Q ss_pred C
Q 010649 450 A 450 (505)
Q Consensus 450 ~ 450 (505)
.
T Consensus 380 ~ 380 (505)
T TIGR00595 380 N 380 (505)
T ss_pred C
Confidence 3
No 92
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.97 E-value=1.7e-29 Score=272.27 Aligned_cols=316 Identities=21% Similarity=0.245 Sum_probs=219.7
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 121 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l----~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
+|+|||.+++.++. .+.+.|++.++|.|||+.++. ++.++.... +....+|||||. ++..||..++.+|+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIa-lL~~L~~~~----~~~gp~LIVvP~-SlL~nW~~Ei~kw~ 242 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTIS-LLGYLHEYR----GITGPHMVVAPK-STLGNWMNEIRRFC 242 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHH-HHHHHHHhc----CCCCCEEEEeCh-HHHHHHHHHHHHHC
Confidence 68999999999876 467899999999999998554 455544321 123348999997 67789999999998
Q ss_pred CCCCceEEEEECCCCchHHHHH---HhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHh
Q 010649 197 ASSKIKSTCIYGGVPKGPQVRD---LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 273 (505)
Q Consensus 197 ~~~~i~~~~~~gg~~~~~~~~~---~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~ 273 (505)
+. +++..++|.......... .....+|+|+|++.+...... +.-..+++|||||||++.+. ...+.+.+..
T Consensus 243 p~--l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k~~W~~VIvDEAHrIKN~--~Sklskalr~ 316 (1033)
T PLN03142 243 PV--LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKRFSWRYIIIDEAHRIKNE--NSLLSKTMRL 316 (1033)
T ss_pred CC--CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hccCCCCEEEEcCccccCCH--HHHHHHHHHH
Confidence 54 667777775443222211 123578999999998664322 22235789999999999865 3445556666
Q ss_pred cCCCCceEEecCCChH----HHHHHHH-------------------------------------HH------------cc
Q 010649 274 IRPDRQTLYWSATWPK----EVEHLAR-------------------------------------QY------------LY 300 (505)
Q Consensus 274 ~~~~~~~v~~SAT~~~----~~~~~~~-------------------------------------~~------------~~ 300 (505)
+. ....+++|+|+-. ++..++. .+ +.
T Consensus 317 L~-a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LP 395 (1033)
T PLN03142 317 FS-TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 395 (1033)
T ss_pred hh-cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCC
Confidence 64 4456889999521 1111110 00 00
Q ss_pred CCcEEEE--cCCCc----------------cccc-------ceee----------------------eeeccChhHHHHH
Q 010649 301 NPYKVII--GSPDL----------------KANH-------AIRQ----------------------HVDIVSESQKYNK 333 (505)
Q Consensus 301 ~~~~~~~--~~~~~----------------~~~~-------~~~~----------------------~~~~~~~~~k~~~ 333 (505)
......+ ..... .... .+.+ .-..+..+.|+..
T Consensus 396 pK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~l 475 (1033)
T PLN03142 396 PKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVL 475 (1033)
T ss_pred CceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHH
Confidence 0000000 00000 0000 0000 0001123567777
Q ss_pred HHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcC---CCcEEEEcccccccCC
Q 010649 334 LVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG---KSPIMTATDVAARGLD 409 (505)
Q Consensus 334 l~~~l~~~~-~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g---~~~vLVaT~~~~~Gid 409 (505)
|..+|..+. .+.+||||++....++.|.++|...++.+..+||+++..+|..+++.|++. ...+|++|.+++.|||
T Consensus 476 LdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGIN 555 (1033)
T PLN03142 476 LDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGIN 555 (1033)
T ss_pred HHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCc
Confidence 777777654 356999999999999999999999999999999999999999999999853 2357899999999999
Q ss_pred CCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEec
Q 010649 410 VKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT 449 (505)
Q Consensus 410 i~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 449 (505)
+..+++||+||++||+....|++||++|.|+...+.++..
T Consensus 556 Lt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRL 595 (1033)
T PLN03142 556 LATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRF 595 (1033)
T ss_pred hhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEE
Confidence 9999999999999999999999999999999866554443
No 93
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=5.3e-30 Score=260.99 Aligned_cols=312 Identities=19% Similarity=0.204 Sum_probs=231.8
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 010649 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~ 199 (505)
++|-++|++||-++..|..+++.|+|.+|||++|..++...-. ++.+++|.+|-++|-+|.+..|+.-+...
T Consensus 296 FelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~--------h~TR~iYTSPIKALSNQKfRDFk~tF~Dv 367 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK--------HMTRTIYTSPIKALSNQKFRDFKETFGDV 367 (1248)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh--------hccceEecchhhhhccchHHHHHHhcccc
Confidence 5899999999999999999999999999999998875543322 26779999999999999999998765443
Q ss_pred CceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCc
Q 010649 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQ 279 (505)
Q Consensus 200 ~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~ 279 (505)
..++|+... ...+.++|+|.+.|.++|-+...-++++.+|||||+|.+.|...+..++.++-.++++.+
T Consensus 368 ----gLlTGDvqi-------nPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~ 436 (1248)
T KOG0947|consen 368 ----GLLTGDVQI-------NPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVN 436 (1248)
T ss_pred ----ceeecceee-------CCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccce
Confidence 367777654 455789999999999999998888899999999999999999999999999999999999
Q ss_pred eEEecCCChHHHHHHHHHHccC---CcEEEEcCCC-------------cc---------cc-------ccee---eeee-
Q 010649 280 TLYWSATWPKEVEHLARQYLYN---PYKVIIGSPD-------------LK---------AN-------HAIR---QHVD- 323 (505)
Q Consensus 280 ~v~~SAT~~~~~~~~~~~~~~~---~~~~~~~~~~-------------~~---------~~-------~~~~---~~~~- 323 (505)
+|++|||.|+.. +++.+.... .+.++..... +. .. .... ..+.
T Consensus 437 ~IlLSATVPN~~-EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~ 515 (1248)
T KOG0947|consen 437 FILLSATVPNTL-EFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDV 515 (1248)
T ss_pred EEEEeccCCChH-HHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccc
Confidence 999999998743 455543221 1111111000 00 00 0000 0000
Q ss_pred ---------------------c------cChhHHH--HHHHHHHHhhcCC--CeEEEEeCCcccHHHHHHHHHhCCC---
Q 010649 324 ---------------------I------VSESQKY--NKLVKLLEDIMDG--SRILIFMDTKKGCDQITRQLRMDGW--- 369 (505)
Q Consensus 324 ---------------------~------~~~~~k~--~~l~~~l~~~~~~--~~vlVF~~~~~~~~~l~~~L~~~~~--- 369 (505)
. .....+. ....+++...... -|++|||-+++.|+..+++|...++
T Consensus 516 ~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~ 595 (1248)
T KOG0947|consen 516 EKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDS 595 (1248)
T ss_pred ccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccc
Confidence 0 0000111 1344444443332 3899999999999999999965321
Q ss_pred ------------------------------------CeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCC
Q 010649 370 ------------------------------------PALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV 413 (505)
Q Consensus 370 ------------------------------------~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~ 413 (505)
.+.++||++-+--++-+.-.|..|-++||+||.+++.|||+|.-
T Consensus 596 ~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPAR 675 (1248)
T KOG0947|consen 596 KEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPAR 675 (1248)
T ss_pred hhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCce
Confidence 23478999999999999999999999999999999999999987
Q ss_pred CEEEEcCC--------CCChhHHHHhhcccccCCCc--cEEEEEecCc
Q 010649 414 KYVINYDF--------PGSLEDYVHRIGRTGRAGAK--GTAYTFFTAA 451 (505)
Q Consensus 414 ~~Vi~~~~--------p~s~~~~~Qr~GR~~R~g~~--g~~~~~~~~~ 451 (505)
++|+.--. --.+.+|.||.|||||.|-+ |+++++....
T Consensus 676 tvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 676 TVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred eEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 77763211 12589999999999998865 7766666543
No 94
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=4.1e-29 Score=260.80 Aligned_cols=180 Identities=18% Similarity=0.261 Sum_probs=141.4
Q ss_pred ccccCCCHHHHHHHHHhcCcee-ecCCCCCCCCCCcCCCCCHHHHHHHH-----HcCCCCC---cHHHHHHHHHHhcCCc
Q 010649 68 PSVAAMSEREVEEYRQQREITV-EGRDVPKPVKSFRDVGFPDYVMQEIS-----KAGFFEP---TPIQAQGWPMALKGRD 138 (505)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~i~~-~~~~~p~~~~~f~~~~l~~~~~~~l~-----~~~~~~~---~~~Q~~~i~~~l~~~~ 138 (505)
+....+|++++..........+ .+..+.. + --+.+.+..++.+.+. ..||..| +|+|.++++.++.+++
T Consensus 32 ~~~~~lsd~eL~~kt~~~k~~l~~~~~ld~-~-l~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~g 109 (970)
T PRK12899 32 EKFSSLSDDELRNKTAELKQRYQDGESLDK-L-LPEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKG 109 (970)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHcCCchHH-H-HHHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCC
Confidence 4567777777654333211111 1211111 0 1245678888888776 5788888 9999999999999999
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHH
Q 010649 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 218 (505)
Q Consensus 139 ~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~ 218 (505)
+++.++||+|||++|++|++.++.. +..++||+||++||.|..+++..+....++++.+++||.+...+...
T Consensus 110 vIAeaqTGeGKTLAf~LP~l~~aL~--------g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~ 181 (970)
T PRK12899 110 FITEMQTGEGKTLTAVMPLYLNALT--------GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEI 181 (970)
T ss_pred eEEEeCCCCChHHHHHHHHHHHHhh--------cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHH
Confidence 9999999999999999999988764 22389999999999999999999999899999999999998877655
Q ss_pred HhcCCcEEEeChHHH-HHHHHccCCccC-------CccEEEEcCcchhh
Q 010649 219 LQKGVEIVIATPGRL-IDMLESHNTNLR-------RVTYLVLDEADRML 259 (505)
Q Consensus 219 ~~~~~~Iiv~T~~~l-~~~l~~~~~~l~-------~~~~lVlDEah~~~ 259 (505)
+ .++|+|+||++| .+++......++ .+.++||||||.|+
T Consensus 182 y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 182 Y--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred c--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 4 589999999999 999987655544 45899999999875
No 95
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=4.8e-29 Score=259.76 Aligned_cols=316 Identities=20% Similarity=0.259 Sum_probs=229.1
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010649 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~ 200 (505)
.|++.|.-+.-.+.+|+ |+...||+|||+++.+|++..... |..|-|++|+.-||.|-++++..+....+
T Consensus 80 ~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~--------G~~v~vvT~neyLA~Rd~e~~~~~~~~LG 149 (796)
T PRK12906 80 RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT--------GKGVHVVTVNEYLSSRDATEMGELYRWLG 149 (796)
T ss_pred CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc--------CCCeEEEeccHHHHHhhHHHHHHHHHhcC
Confidence 67788877766655554 999999999999999999988877 77799999999999999999999999999
Q ss_pred ceEEEEECCCCchHHHHHHhcCCcEEEeChHHHH-HHHHcc------CCccCCccEEEEcCcchhh-cC-----------
Q 010649 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-DMLESH------NTNLRRVTYLVLDEADRML-DM----------- 261 (505)
Q Consensus 201 i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~-~~l~~~------~~~l~~~~~lVlDEah~~~-~~----------- 261 (505)
+.+.++.++.+...... .-.|+|+.+|...|- ++|... ....+.+.+.||||+|.++ |.
T Consensus 150 l~vg~i~~~~~~~~r~~--~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~ 227 (796)
T PRK12906 150 LTVGLNLNSMSPDEKRA--AYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQA 227 (796)
T ss_pred CeEEEeCCCCCHHHHHH--HhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCC
Confidence 99999988765543332 346899999987753 233221 1224568899999999754 10
Q ss_pred -C---CHHHHHHHHHhcCCC------------------------------------------------------------
Q 010649 262 -G---FEPQIKKILSQIRPD------------------------------------------------------------ 277 (505)
Q Consensus 262 -~---~~~~~~~il~~~~~~------------------------------------------------------------ 277 (505)
. ....+..++..+...
T Consensus 228 ~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A 307 (796)
T PRK12906 228 EKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRA 307 (796)
T ss_pred CcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHH
Confidence 0 111112222211110
Q ss_pred --------------------------------------------------------------------CceEEecCCChH
Q 010649 278 --------------------------------------------------------------------RQTLYWSATWPK 289 (505)
Q Consensus 278 --------------------------------------------------------------------~~~v~~SAT~~~ 289 (505)
.++.+||+|...
T Consensus 308 ~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~ 387 (796)
T PRK12906 308 NYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKT 387 (796)
T ss_pred HHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHH
Confidence 123344444433
Q ss_pred HHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhCC
Q 010649 290 EVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDG 368 (505)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~vlVF~~~~~~~~~l~~~L~~~~ 368 (505)
+..++.+.|..+-+.+ .... .............+...|...+.+.+... ..+.++||||+|+..++.++..|.+.+
T Consensus 388 e~~Ef~~iY~l~vv~I--Ptnk-p~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~g 464 (796)
T PRK12906 388 EEEEFREIYNMEVITI--PTNR-PVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAG 464 (796)
T ss_pred HHHHHHHHhCCCEEEc--CCCC-CeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 3333333332221111 1000 00000111223445677888888888654 456799999999999999999999999
Q ss_pred CCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCC---CCC-----EEEEcCCCCChhHHHHhhcccccCCC
Q 010649 369 WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK---DVK-----YVINYDFPGSLEDYVHRIGRTGRAGA 440 (505)
Q Consensus 369 ~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~---~~~-----~Vi~~~~p~s~~~~~Qr~GR~~R~g~ 440 (505)
+++..+|+++...++..+..+++.|. |+|||++++||+||+ +|. +||+++.|.|...|.|++||+||.|.
T Consensus 465 i~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~ 542 (796)
T PRK12906 465 IPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGD 542 (796)
T ss_pred CCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCC
Confidence 99999999999888888888888777 999999999999995 888 99999999999999999999999999
Q ss_pred ccEEEEEecCccH
Q 010649 441 KGTAYTFFTAANA 453 (505)
Q Consensus 441 ~g~~~~~~~~~~~ 453 (505)
+|.+..|++.+|.
T Consensus 543 ~G~s~~~~sleD~ 555 (796)
T PRK12906 543 PGSSRFYLSLEDD 555 (796)
T ss_pred CcceEEEEeccch
Confidence 9999999998764
No 96
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.97 E-value=9.7e-29 Score=271.39 Aligned_cols=308 Identities=16% Similarity=0.205 Sum_probs=199.1
Q ss_pred CCCcHHHHHHHHHHhc-----CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 010649 120 FEPTPIQAQGWPMALK-----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~-----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~ 194 (505)
..|+++|.+|+..+.. .++++++++||||||.+++. ++..+... ...++||||+|+++|+.|+.+.+..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~-----~~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKA-----KRFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhc-----CccCeEEEEecHHHHHHHHHHHHHh
Confidence 4689999999987652 35799999999999988554 44444432 1246899999999999999999998
Q ss_pred hcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHcc-----CCccCCccEEEEcCcchhhcC--------
Q 010649 195 FGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-----NTNLRRVTYLVLDEADRMLDM-------- 261 (505)
Q Consensus 195 ~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~-----~~~l~~~~~lVlDEah~~~~~-------- 261 (505)
+..........+++....... .......|+|+|+++|...+... ...+..+++||+||||+....
T Consensus 486 ~~~~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~ 563 (1123)
T PRK11448 486 TKIEGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGE 563 (1123)
T ss_pred cccccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccch
Confidence 753322121112211100011 11334789999999998765321 235678999999999995310
Q ss_pred -------CCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHH--------------HHccC---CcEEEEcCCC--cccc
Q 010649 262 -------GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLAR--------------QYLYN---PYKVIIGSPD--LKAN 315 (505)
Q Consensus 262 -------~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~--------------~~~~~---~~~~~~~~~~--~~~~ 315 (505)
.+...++.++..+ +...|+||||+......+.. -++.+ |+.+...... ....
T Consensus 564 ~~~~~~~~~~~~yr~iL~yF--dA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~ 641 (1123)
T PRK11448 564 LQFRDQLDYVSKYRRVLDYF--DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFE 641 (1123)
T ss_pred hccchhhhHHHHHHHHHhhc--CccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccccccc
Confidence 1246778888765 35689999998644322211 11111 1221110000 0000
Q ss_pred c--------ceeeee--eccCh---------------hHHHHHHHHHHHhh---cCCCeEEEEeCCcccHHHHHHHHHhC
Q 010649 316 H--------AIRQHV--DIVSE---------------SQKYNKLVKLLEDI---MDGSRILIFMDTKKGCDQITRQLRMD 367 (505)
Q Consensus 316 ~--------~~~~~~--~~~~~---------------~~k~~~l~~~l~~~---~~~~~vlVF~~~~~~~~~l~~~L~~~ 367 (505)
. .....+ ...++ ......+.+.+.+. ....++||||.++.+|+.+++.|.+.
T Consensus 642 ~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~ 721 (1123)
T PRK11448 642 KGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEA 721 (1123)
T ss_pred ccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHH
Confidence 0 000000 00000 00111111211111 12369999999999999999888653
Q ss_pred ------CC---CeEEEcCCCCHHHHHHHHHHHhcCCC-cEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhccccc
Q 010649 368 ------GW---PALSIHGDKSQAERDWVLSEFKAGKS-PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGR 437 (505)
Q Consensus 368 ------~~---~~~~lhg~~~~~~r~~~~~~f~~g~~-~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R 437 (505)
++ .+..+||+.+ ++..++++|+++.. +|+|+++++.+|+|+|.+.+||+++++.|...|+||+||+.|
T Consensus 722 f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR 799 (1123)
T PRK11448 722 FKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATR 799 (1123)
T ss_pred HHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhcc
Confidence 22 4567899875 46789999999887 589999999999999999999999999999999999999999
Q ss_pred CC
Q 010649 438 AG 439 (505)
Q Consensus 438 ~g 439 (505)
.-
T Consensus 800 ~~ 801 (1123)
T PRK11448 800 LC 801 (1123)
T ss_pred CC
Confidence 63
No 97
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=1e-29 Score=253.00 Aligned_cols=309 Identities=20% Similarity=0.261 Sum_probs=237.1
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 010649 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~ 199 (505)
++|-|+|.++|..+-.+..+++.|.|.+|||.+|..++...+.. +.+|++.+|-++|-+|.+.++..-+..
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~--------kQRVIYTSPIKALSNQKYREl~~EF~D- 198 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE--------KQRVIYTSPIKALSNQKYRELLEEFKD- 198 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh--------cCeEEeeChhhhhcchhHHHHHHHhcc-
Confidence 58899999999999999999999999999999999987777766 667999999999999999998865533
Q ss_pred CceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCc
Q 010649 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQ 279 (505)
Q Consensus 200 ~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~ 279 (505)
|...+|+... ...+--+|+|.+.|..++-++.--++.+.||||||+|.|-|...+-.|+..+-.++++.+
T Consensus 199 ---VGLMTGDVTI-------nP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr 268 (1041)
T KOG0948|consen 199 ---VGLMTGDVTI-------NPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVR 268 (1041)
T ss_pred ---cceeecceee-------CCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccce
Confidence 4555666544 345678999999999999988878899999999999999999888888888888999999
Q ss_pred eEEecCCChHHHHHHHHHHc---cCCcEEEEcCCCcccccceeeee---------eccCh-----hHHHHHHH-------
Q 010649 280 TLYWSATWPKEVEHLARQYL---YNPYKVIIGSPDLKANHAIRQHV---------DIVSE-----SQKYNKLV------- 335 (505)
Q Consensus 280 ~v~~SAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-----~~k~~~l~------- 335 (505)
.+++|||+|+ ..+++.+.. ..|..+........ .+.+++ .++++ ++.+...+
T Consensus 269 ~VFLSATiPN-A~qFAeWI~~ihkQPcHVVYTdyRPT---PLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~ 344 (1041)
T KOG0948|consen 269 FVFLSATIPN-ARQFAEWICHIHKQPCHVVYTDYRPT---PLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAG 344 (1041)
T ss_pred EEEEeccCCC-HHHHHHHHHHHhcCCceEEeecCCCC---cceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccC
Confidence 9999999997 445666543 34555544332211 111111 11111 11222222
Q ss_pred ----------------------------HHHHhhcC--CCeEEEEeCCcccHHHHHHHHHhCCCC---------------
Q 010649 336 ----------------------------KLLEDIMD--GSRILIFMDTKKGCDQITRQLRMDGWP--------------- 370 (505)
Q Consensus 336 ----------------------------~~l~~~~~--~~~vlVF~~~~~~~~~l~~~L~~~~~~--------------- 370 (505)
.+++.... -.++|||+-++++|+.++-.+.+..+.
T Consensus 345 ~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nA 424 (1041)
T KOG0948|consen 345 ESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNA 424 (1041)
T ss_pred CCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHH
Confidence 22222211 238999999999999999888654322
Q ss_pred ------------------------eEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEE----cCC-
Q 010649 371 ------------------------ALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YDF- 421 (505)
Q Consensus 371 ------------------------~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~----~~~- 421 (505)
+..+|+++-+--++-+.-.|..|-+++|+||.+++.|+|+|.-++|+- ||-
T Consensus 425 i~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~ 504 (1041)
T KOG0948|consen 425 IDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGK 504 (1041)
T ss_pred HHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCc
Confidence 237799999999999999999999999999999999999998777762 222
Q ss_pred ---CCChhHHHHhhcccccCCCc--cEEEEEecCc
Q 010649 422 ---PGSLEDYVHRIGRTGRAGAK--GTAYTFFTAA 451 (505)
Q Consensus 422 ---p~s~~~~~Qr~GR~~R~g~~--g~~~~~~~~~ 451 (505)
.-+.-.|+||.|||||.|-+ |.+++++++.
T Consensus 505 ~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 505 KFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred ceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 22678999999999999875 8888888765
No 98
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.97 E-value=7.6e-29 Score=254.40 Aligned_cols=343 Identities=21% Similarity=0.268 Sum_probs=246.3
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHH--HHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHH
Q 010649 106 FPDYVMQEISKAGFFEPTPIQAQGW--PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 183 (505)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~~~i--~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~ 183 (505)
++....-..+..|...++.||.+++ +.++.+++.|..+||+.|||+++.+-++..+... ...++++.|..+
T Consensus 208 ~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-------rr~~llilp~vs 280 (1008)
T KOG0950|consen 208 PTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-------RRNVLLILPYVS 280 (1008)
T ss_pred chHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-------hhceeEecceee
Confidence 3333344445678889999999998 5688899999999999999999999888887764 456999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHc--cCCccCCccEEEEcCcchhhcC
Q 010649 184 LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES--HNTNLRRVTYLVLDEADRMLDM 261 (505)
Q Consensus 184 La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~--~~~~l~~~~~lVlDEah~~~~~ 261 (505)
.+..-...+..|....++.+.+.+|..+.... .+...+.|||.|+-..++++ ..-.+..+++||+||.|.+.+.
T Consensus 281 iv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~ 356 (1008)
T KOG0950|consen 281 IVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDK 356 (1008)
T ss_pred hhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeecc
Confidence 99999999999999999999998877655433 23458999999986544433 1223567899999999999999
Q ss_pred CCHHHHHHHHHhc-----CCCCceEEecCCChHHHHHHHHHHccCCcEEE-EcCCCcccccceeeeeeccChhHHH----
Q 010649 262 GFEPQIKKILSQI-----RPDRQTLYWSATWPKEVEHLARQYLYNPYKVI-IGSPDLKANHAIRQHVDIVSESQKY---- 331 (505)
Q Consensus 262 ~~~~~~~~il~~~-----~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~k~---- 331 (505)
+.+..++.++.++ ....|+|+||||+|+ +..+.. ++...+... +....+.....+-..+.......-.
T Consensus 357 ~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N-~~lL~~-~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia 434 (1008)
T KOG0950|consen 357 GRGAILELLLAKILYENLETSVQIIGMSATIPN-NSLLQD-WLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIA 434 (1008)
T ss_pred ccchHHHHHHHHHHHhccccceeEeeeecccCC-hHHHHH-HhhhhheecccCcccchhccCCCcccccchhhHHHHHhh
Confidence 9888888877664 345689999999986 333322 222111111 1111111111111111111000000
Q ss_pred ------------HHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHh--------------------------------
Q 010649 332 ------------NKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRM-------------------------------- 366 (505)
Q Consensus 332 ------------~~l~~~l~~~-~~~~~vlVF~~~~~~~~~l~~~L~~-------------------------------- 366 (505)
+.++.+..+. .++.++||||++++.|+.++..+..
T Consensus 435 ~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld 514 (1008)
T KOG0950|consen 435 NLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILD 514 (1008)
T ss_pred hhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccc
Confidence 2223333332 2344699999999999888765522
Q ss_pred ------CCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCC----CCChhHHHHhhcccc
Q 010649 367 ------DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF----PGSLEDYVHRIGRTG 436 (505)
Q Consensus 367 ------~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~----p~s~~~~~Qr~GR~~ 436 (505)
..+.+.++|++++.++|+.+...|++|...|++||++++.|+|+|..+++|-.-+ ..+.-+|.||+||||
T Consensus 515 ~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAG 594 (1008)
T KOG0950|consen 515 PVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAG 594 (1008)
T ss_pred hHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhh
Confidence 0134668899999999999999999999999999999999999999998885432 346789999999999
Q ss_pred cCCCc--cEEEEEecCccHHHHHHHHH
Q 010649 437 RAGAK--GTAYTFFTAANARFAKELIT 461 (505)
Q Consensus 437 R~g~~--g~~~~~~~~~~~~~~~~l~~ 461 (505)
|+|-+ |.+++++.+.+.+...+++.
T Consensus 595 R~gidT~GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 595 RTGIDTLGDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred hcccccCcceEEEeeccchhHHHHHHh
Confidence 99864 99999999998776655444
No 99
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.96 E-value=8.8e-27 Score=213.61 Aligned_cols=307 Identities=20% Similarity=0.239 Sum_probs=218.0
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 121 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l----~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
+|+|.|+.+-..++ +.+++|++|-||+|||.+ +...++..+.+ |.++.+.+|....+.+++..+++-+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~-------G~~vciASPRvDVclEl~~Rlk~aF 168 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ-------GGRVCIASPRVDVCLELYPRLKQAF 168 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc-------CCeEEEecCcccchHHHHHHHHHhh
Confidence 78999998876554 568999999999999987 66677777764 7889999999999999999999865
Q ss_pred CCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHH-HHHHhcC
Q 010649 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIK-KILSQIR 275 (505)
Q Consensus 197 ~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~-~il~~~~ 275 (505)
.. +.+.++||+.+..- ...++|+|...|+++-. .|+++|+||+|.+.-.. .+.+. .+-+..+
T Consensus 169 ~~--~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~-d~~L~~Av~~ark 231 (441)
T COG4098 169 SN--CDIDLLYGDSDSYF-------RAPLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSD-DQSLQYAVKKARK 231 (441)
T ss_pred cc--CCeeeEecCCchhc-------cccEEEEehHHHHHHHh-------hccEEEEeccccccccC-CHHHHHHHHHhhc
Confidence 44 66788898765421 25899999999887743 57899999999876433 22333 3334445
Q ss_pred CCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHH------HHHHHHHHhhc-CCCeEE
Q 010649 276 PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKY------NKLVKLLEDIM-DGSRIL 348 (505)
Q Consensus 276 ~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~------~~l~~~l~~~~-~~~~vl 348 (505)
+.--+|.+|||+++.+++-+..--.. .+.+....-..+-.+-..+...+...++ ..|...|+... .+.++|
T Consensus 232 ~~g~~IylTATp~k~l~r~~~~g~~~--~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~l 309 (441)
T COG4098 232 KEGATIYLTATPTKKLERKILKGNLR--ILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVL 309 (441)
T ss_pred ccCceEEEecCChHHHHHHhhhCCee--EeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEE
Confidence 66778999999998776554432111 1111111101111122222222333332 24666666543 456999
Q ss_pred EEeCCcccHHHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCC--CCC
Q 010649 349 IFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF--PGS 424 (505)
Q Consensus 349 VF~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~--p~s 424 (505)
||+++++.++.++..|++. ...+..+|+. ...|.+..++|++|++++||+|.+++||+.+|++++.|.-.- ..+
T Consensus 310 iF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfT 387 (441)
T COG4098 310 IFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFT 387 (441)
T ss_pred EEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCccccc
Confidence 9999999999999999553 3445778885 356888999999999999999999999999999998775443 357
Q ss_pred hhHHHHhhcccccCCC--ccEEEEEecCccHHHH
Q 010649 425 LEDYVHRIGRTGRAGA--KGTAYTFFTAANARFA 456 (505)
Q Consensus 425 ~~~~~Qr~GR~~R~g~--~g~~~~~~~~~~~~~~ 456 (505)
.+.++|..||+||.-. +|.+..|..-....+.
T Consensus 388 esaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~ 421 (441)
T COG4098 388 ESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMK 421 (441)
T ss_pred HHHHHHHhhhccCCCcCCCCcEEEEeccchHHHH
Confidence 8999999999999643 4766666655554443
No 100
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=7.1e-28 Score=254.92 Aligned_cols=312 Identities=21% Similarity=0.271 Sum_probs=233.2
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 010649 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~ 199 (505)
++|-++|++++..+..+.+++++||||+|||+++..++...+.. +.++++.+|.++|.+|.+.++.......
T Consensus 118 F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~--------~qrviYTsPIKALsNQKyrdl~~~fgdv 189 (1041)
T COG4581 118 FELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD--------GQRVIYTSPIKALSNQKYRDLLAKFGDV 189 (1041)
T ss_pred CCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc--------CCceEeccchhhhhhhHHHHHHHHhhhh
Confidence 48999999999999999999999999999999988876666555 6669999999999999998887643322
Q ss_pred CceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCc
Q 010649 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQ 279 (505)
Q Consensus 200 ~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~ 279 (505)
.-.+..++|+... ..++.++|+|.+.|.+++-.+...+..+.+|||||+|.|.|...+..++.++-.++...+
T Consensus 190 ~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~ 262 (1041)
T COG4581 190 ADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVR 262 (1041)
T ss_pred hhhccceecceee-------CCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCc
Confidence 2334666776654 456889999999999999998888999999999999999999999999999999999999
Q ss_pred eEEecCCChHHHHHHHHHHc---cCCcEEEEcCCCcccccceeeeee-------ccChhH--------------------
Q 010649 280 TLYWSATWPKEVEHLARQYL---YNPYKVIIGSPDLKANHAIRQHVD-------IVSESQ-------------------- 329 (505)
Q Consensus 280 ~v~~SAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-------------------- 329 (505)
+|+||||.|+ .+++..++- ..|..++..... +..+.+++. .+++..
T Consensus 263 ~v~LSATv~N-~~EF~~Wi~~~~~~~~~vv~t~~R---pvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~ 338 (1041)
T COG4581 263 FVFLSATVPN-AEEFAEWIQRVHSQPIHVVSTEHR---PVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEK 338 (1041)
T ss_pred EEEEeCCCCC-HHHHHHHHHhccCCCeEEEeecCC---CCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchh
Confidence 9999999987 444555442 234443332211 111111111 001000
Q ss_pred ---------------------------HHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC---------------
Q 010649 330 ---------------------------KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--------------- 367 (505)
Q Consensus 330 ---------------------------k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~--------------- 367 (505)
+...++..+... ..-++|+|+-+++.|+.++..+...
T Consensus 339 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~-~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~i 417 (1041)
T COG4581 339 VRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKD-NLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREI 417 (1041)
T ss_pred ccccCccccccccccccccCCcccccccchHHHhhhhhh-cCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHH
Confidence 001122222111 1238999999999998887776421
Q ss_pred -------------CCC-------------eEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEE----
Q 010649 368 -------------GWP-------------ALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI---- 417 (505)
Q Consensus 368 -------------~~~-------------~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi---- 417 (505)
+++ +.++|++|-+..+..+...|..|-++|++||.+++.|+|+|.-++|+
T Consensus 418 i~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~ 497 (1041)
T COG4581 418 IDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLS 497 (1041)
T ss_pred HHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeE
Confidence 121 23679999999999999999999999999999999999999877666
Q ss_pred EcC----CCCChhHHHHhhcccccCCCc--cEEEEEecCc
Q 010649 418 NYD----FPGSLEDYVHRIGRTGRAGAK--GTAYTFFTAA 451 (505)
Q Consensus 418 ~~~----~p~s~~~~~Qr~GR~~R~g~~--g~~~~~~~~~ 451 (505)
.+| .+-++..|.|+.|||||.|.+ |.++++..+.
T Consensus 498 K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 498 KFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred EecCCceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 222 133689999999999999976 7777774443
No 101
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.96 E-value=7.7e-27 Score=233.53 Aligned_cols=328 Identities=23% Similarity=0.319 Sum_probs=231.6
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 121 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l----~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
++++||.+.++++. .|-++|+..++|.|||+. .++++.++.... ...|| .||+||...|. .|..++++|.
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~---~~~GP-fLVi~P~StL~-NW~~Ef~rf~ 240 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRK---GIPGP-FLVIAPKSTLD-NWMNEFKRFT 240 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhc---CCCCC-eEEEeeHhhHH-HHHHHHHHhC
Confidence 68999999999876 366899999999999988 444666665532 11244 89999997775 5999999998
Q ss_pred CCCCceEEEEECCCCchHHHH-HH--hcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHh
Q 010649 197 ASSKIKSTCIYGGVPKGPQVR-DL--QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 273 (505)
Q Consensus 197 ~~~~i~~~~~~gg~~~~~~~~-~~--~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~ 273 (505)
+. +.+++++|+........ ++ ....+|+|+|++..+..-. .+.-..+.++||||||++.+. ...+.++++.
T Consensus 241 P~--l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~--~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~ 314 (971)
T KOG0385|consen 241 PS--LNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS--FLKKFNWRYLVIDEAHRIKNE--KSKLSKILRE 314 (971)
T ss_pred CC--cceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH--HHhcCCceEEEechhhhhcch--hhHHHHHHHH
Confidence 66 78889999865443322 22 2357999999999765421 122235789999999999986 4566677777
Q ss_pred cCCCCceEEecCCChH-HH------------------HHHHHHH----------------------------------cc
Q 010649 274 IRPDRQTLYWSATWPK-EV------------------EHLARQY----------------------------------LY 300 (505)
Q Consensus 274 ~~~~~~~v~~SAT~~~-~~------------------~~~~~~~----------------------------------~~ 300 (505)
+..+. .+++|+|+-. ++ +.+-.+| +.
T Consensus 315 f~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLp 393 (971)
T KOG0385|consen 315 FKTDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLP 393 (971)
T ss_pred hcccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCC
Confidence 75444 4667888310 00 0000000 00
Q ss_pred CCcEEEE--cCCC-------------c----------------------------------ccccceeeeeeccChhHHH
Q 010649 301 NPYKVII--GSPD-------------L----------------------------------KANHAIRQHVDIVSESQKY 331 (505)
Q Consensus 301 ~~~~~~~--~~~~-------------~----------------------------------~~~~~~~~~~~~~~~~~k~ 331 (505)
....+.+ +... + .........-..+..+.|+
T Consensus 394 pKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm 473 (971)
T KOG0385|consen 394 PKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKM 473 (971)
T ss_pred CcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcce
Confidence 0001110 0000 0 0000001111123346788
Q ss_pred HHHHHHHHhhcC-CCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCC---CcEEEEccccccc
Q 010649 332 NKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGK---SPIMTATDVAARG 407 (505)
Q Consensus 332 ~~l~~~l~~~~~-~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~---~~vLVaT~~~~~G 407 (505)
..|..+|..+.. +++||||.+.-...+.|.+++.-.++....|.|+++.++|...++.|.... .-+|++|.+.+-|
T Consensus 474 ~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLG 553 (971)
T KOG0385|consen 474 LVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLG 553 (971)
T ss_pred ehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccc
Confidence 888888877654 569999999999999999999999999999999999999999999999654 3378899999999
Q ss_pred CCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHH
Q 010649 408 LDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIT 461 (505)
Q Consensus 408 idi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 461 (505)
||+..+++||.||..|||..-.|...||+|.||...+.+|-...+..+...+++
T Consensus 554 INL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~Ive 607 (971)
T KOG0385|consen 554 INLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVE 607 (971)
T ss_pred cccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHH
Confidence 999999999999999999999999999999999876666555554444444444
No 102
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.1e-26 Score=242.62 Aligned_cols=316 Identities=18% Similarity=0.222 Sum_probs=224.5
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010649 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~ 200 (505)
.|++.|.-+ .+.-++.-|+.++||.|||++|.+|++.+.+. +..|.||+|+..||.|..+++..+....+
T Consensus 82 ~~ydVQliG--gl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~--------g~~VhIvT~ndyLA~RD~e~m~~l~~~lG 151 (908)
T PRK13107 82 RHFDVQLLG--GMVLDSNRIAEMRTGEGKTLTATLPAYLNALT--------GKGVHVITVNDYLARRDAENNRPLFEFLG 151 (908)
T ss_pred CcCchHHhc--chHhcCCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 455555544 33334567899999999999999999988775 55599999999999999999999999999
Q ss_pred ceEEEEECCCCchHHHHHHhcCCcEEEeChHHH-HHHHHcc-CCc-----cCCccEEEEcCcchhhcCC-----------
Q 010649 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH-NTN-----LRRVTYLVLDEADRMLDMG----------- 262 (505)
Q Consensus 201 i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~-~~~-----l~~~~~lVlDEah~~~~~~----------- 262 (505)
+.+.++.++.+... +.-.-.++|+++||+.| .++|... ... .+.+.++||||+|.++-..
T Consensus 152 lsv~~i~~~~~~~~--r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~ 229 (908)
T PRK13107 152 LTVGINVAGLGQQE--KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAA 229 (908)
T ss_pred CeEEEecCCCCHHH--HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCC
Confidence 99999999877522 22233689999999999 7887764 323 2778999999999765210
Q ss_pred -----CHHHHHHHHHhcC-------------------CCCc---------------------------------------
Q 010649 263 -----FEPQIKKILSQIR-------------------PDRQ--------------------------------------- 279 (505)
Q Consensus 263 -----~~~~~~~il~~~~-------------------~~~~--------------------------------------- 279 (505)
....+..++..+. ...+
T Consensus 230 ~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~ 309 (908)
T PRK13107 230 EDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHH 309 (908)
T ss_pred ccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHH
Confidence 1111111111111 0111
Q ss_pred -----------------------------------------------------------------------------eEE
Q 010649 280 -----------------------------------------------------------------------------TLY 282 (505)
Q Consensus 280 -----------------------------------------------------------------------------~v~ 282 (505)
+.+
T Consensus 310 i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~G 389 (908)
T PRK13107 310 VNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAG 389 (908)
T ss_pred HHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhc
Confidence 122
Q ss_pred ecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHH
Q 010649 283 WSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQIT 361 (505)
Q Consensus 283 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~vlVF~~~~~~~~~l~ 361 (505)
||+|...+..++.+-|..+-+.+....+ ... .-.....+.....|...+++.+.+. ..+.++||||.|+..++.++
T Consensus 390 MTGTa~te~~Ef~~iY~l~Vv~IPTnkp--~~R-~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls 466 (908)
T PRK13107 390 MTGTADTEAFEFQHIYGLDTVVVPTNRP--MVR-KDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLA 466 (908)
T ss_pred ccCCChHHHHHHHHHhCCCEEECCCCCC--ccc-eeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHH
Confidence 2222222222222222111111100000 000 0111122344577888887777665 45669999999999999999
Q ss_pred HHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCC----------------------------
Q 010649 362 RQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV---------------------------- 413 (505)
Q Consensus 362 ~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~---------------------------- 413 (505)
..|.+.++++..+|+.+++.++..+.+.|+.|. |+|||++++||+||.=-
T Consensus 467 ~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (908)
T PRK13107 467 RLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIR 544 (908)
T ss_pred HHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhh
Confidence 999999999999999999999999999999998 99999999999999621
Q ss_pred ---------CEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccH
Q 010649 414 ---------KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (505)
Q Consensus 414 ---------~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 453 (505)
=+||-...+.|..--.|-.||+||.|.+|.+..|++-.|.
T Consensus 545 ~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 545 HDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 2688888899999999999999999999999999988764
No 103
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.95 E-value=1.5e-26 Score=205.69 Aligned_cols=165 Identities=33% Similarity=0.548 Sum_probs=142.9
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCce
Q 010649 123 TPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIK 202 (505)
Q Consensus 123 ~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~ 202 (505)
||+|.++++.+.+++++++.+|||+|||++++++++..+... ...+++|++|+++|++|..+.+.+++...+++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 74 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG------KDARVLIIVPTRALAEQQFERLRKFFSNTNVR 74 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT------SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC------CCceEEEEeecccccccccccccccccccccc
Confidence 689999999999999999999999999999999999888763 13489999999999999999999999888889
Q ss_pred EEEEECCCCch-HHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcC--CCCc
Q 010649 203 STCIYGGVPKG-PQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR--PDRQ 279 (505)
Q Consensus 203 ~~~~~gg~~~~-~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~--~~~~ 279 (505)
+..++++.... .....+..+++|+|+||++|.+.+.....++.++++||+||+|.+....+...+..++..+. +..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~ 154 (169)
T PF00270_consen 75 VVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQ 154 (169)
T ss_dssp EEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSE
T ss_pred cccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCc
Confidence 99999988755 33344456799999999999999988656777899999999999999888888988888873 3689
Q ss_pred eEEecCCChHHHHH
Q 010649 280 TLYWSATWPKEVEH 293 (505)
Q Consensus 280 ~v~~SAT~~~~~~~ 293 (505)
++++|||+++.++.
T Consensus 155 ~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 155 IILLSATLPSNVEK 168 (169)
T ss_dssp EEEEESSSTHHHHH
T ss_pred EEEEeeCCChhHhh
Confidence 99999999976654
No 104
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.94 E-value=2e-25 Score=235.06 Aligned_cols=308 Identities=21% Similarity=0.290 Sum_probs=216.5
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH-hcCCCCc
Q 010649 123 TPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASSKI 201 (505)
Q Consensus 123 ~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~-~~~~~~i 201 (505)
+....+.+.++.++..+++++|||||||+..-. .+.+... ..+.++.+.-|.|--|..+++.+.+ ++...+-
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~----~lle~g~---~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~ 124 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQ----FLLEEGL---GIAGKIGCTQPRRLAARSVAERVAEELGEKLGE 124 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHH----HHHhhhc---ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCc
Confidence 344556666677788899999999999986322 2222221 2356799999999666666666554 3333332
Q ss_pred eEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcc-hhhcCCCHH-HHHHHHHhcCCCCc
Q 010649 202 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD-RMLDMGFEP-QIKKILSQIRPDRQ 279 (505)
Q Consensus 202 ~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah-~~~~~~~~~-~~~~il~~~~~~~~ 279 (505)
.|....-..+ .......|-++|.+.|++.+..+.. |+.+++||+||+| +.++.++.- .+..++...+++.+
T Consensus 125 ~VGY~iRfe~------~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLK 197 (845)
T COG1643 125 TVGYSIRFES------KVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLK 197 (845)
T ss_pred eeeEEEEeec------cCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCce
Confidence 2322111111 1123468999999999999887554 8999999999999 444444333 34455667777899
Q ss_pred eEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeee-ecc-ChhHHHHHHHHHHHhhc--CCCeEEEEeCCcc
Q 010649 280 TLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHV-DIV-SESQKYNKLVKLLEDIM--DGSRILIFMDTKK 355 (505)
Q Consensus 280 ~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~k~~~l~~~l~~~~--~~~~vlVF~~~~~ 355 (505)
+|.||||+. .+++.+.|..-|+..+-+... .+...+ ... .+..-...+...+..+. ..+.+|||.+...
T Consensus 198 iIimSATld--~~rfs~~f~~apvi~i~GR~f-----PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~ 270 (845)
T COG1643 198 LIIMSATLD--AERFSAYFGNAPVIEIEGRTY-----PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQR 270 (845)
T ss_pred EEEEecccC--HHHHHHHcCCCCEEEecCCcc-----ceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHH
Confidence 999999994 455655554445444333321 122222 111 22223444455444433 3458999999999
Q ss_pred cHHHHHHHHHh----CCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCC----------
Q 010649 356 GCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF---------- 421 (505)
Q Consensus 356 ~~~~l~~~L~~----~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~---------- 421 (505)
+.+.+++.|++ ....+..+||.++.+++..+++--..++.+|++||++++++|.||++.+||+-+.
T Consensus 271 EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~ 350 (845)
T COG1643 271 EIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRT 350 (845)
T ss_pred HHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccccccccc
Confidence 99999999987 3577889999999999999988888887889999999999999999999996654
Q ss_pred --------CCChhHHHHhhcccccCCCccEEEEEecCcc
Q 010649 422 --------PGSLEDYVHRIGRTGRAGAKGTAYTFFTAAN 452 (505)
Q Consensus 422 --------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 452 (505)
|-|.++..||.|||||. .+|.||-++++++
T Consensus 351 g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~ 388 (845)
T COG1643 351 GLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEED 388 (845)
T ss_pred CceeeeEEEechhhhhhhccccccC-CCceEEEecCHHH
Confidence 33788999999999999 6899999999854
No 105
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.94 E-value=2e-25 Score=239.24 Aligned_cols=325 Identities=18% Similarity=0.253 Sum_probs=219.8
Q ss_pred CCcHHHHHHHHHHhcC---C-cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 121 EPTPIQAQGWPMALKG---R-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~~---~-~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
.+++.|..++..++.. . .+++.||||+|||.+++++++..+... .....+++++.|+++++++++..+..+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK----IKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc----ccccceEEEEccHHHHHHHHHHHHHhhh
Confidence 4589999999988753 3 688999999999999999888776662 1147789999999999999999999876
Q ss_pred CCCCceEEEEECCCCchHHHHHHh---------------cCCcEEEeChHHHHHHHHccC-Cc-c--CCccEEEEcCcch
Q 010649 197 ASSKIKSTCIYGGVPKGPQVRDLQ---------------KGVEIVIATPGRLIDMLESHN-TN-L--RRVTYLVLDEADR 257 (505)
Q Consensus 197 ~~~~i~~~~~~gg~~~~~~~~~~~---------------~~~~Iiv~T~~~l~~~l~~~~-~~-l--~~~~~lVlDEah~ 257 (505)
..........++.... ....... .-..++++||-.+........ .. + --.+++||||+|.
T Consensus 271 ~~~~~~~~~~h~~~~~-~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 271 GLFSVIGKSLHSSSKE-PLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred cccccccccccccccc-hhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHh
Confidence 5543332212222211 1111000 012344555544433211111 11 1 1236899999999
Q ss_pred hhcCCCHHHHHHHHHhc-CCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcc-ccc-ceeeee-eccChhHHHHH
Q 010649 258 MLDMGFEPQIKKILSQI-RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLK-ANH-AIRQHV-DIVSESQKYNK 333 (505)
Q Consensus 258 ~~~~~~~~~~~~il~~~-~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~-~~~~~~~k~~~ 333 (505)
+.+......+..++..+ ..+..+|+||||+|+...+.....+.....+........ ... .+.+.. ...........
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 429 (733)
T COG1203 350 YADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEEL 429 (733)
T ss_pred hcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhh
Confidence 88773344444444444 357889999999999999998888776655544322100 000 111110 00011100122
Q ss_pred HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHh----cCCCcEEEEcccccccCC
Q 010649 334 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFK----AGKSPIMTATDVAARGLD 409 (505)
Q Consensus 334 l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~----~g~~~vLVaT~~~~~Gid 409 (505)
.........++++++|.|||+..|..++..|+..+.++..+|+.+...+|.+.++.++ .....|+|||++++.|+|
T Consensus 430 ~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvD 509 (733)
T COG1203 430 IELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVD 509 (733)
T ss_pred hhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEec
Confidence 3333444556789999999999999999999998778999999999999998888654 467889999999999999
Q ss_pred CCCCCEEEEcCCCCChhHHHHhhcccccCC--CccEEEEEecCccH
Q 010649 410 VKDVKYVINYDFPGSLEDYVHRIGRTGRAG--AKGTAYTFFTAANA 453 (505)
Q Consensus 410 i~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~~ 453 (505)
+ +.+++|-=-.| +...+||+||++|.| ..|..+++......
T Consensus 510 i-dfd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~~~ 552 (733)
T COG1203 510 I-DFDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEERG 552 (733)
T ss_pred c-ccCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeecccCC
Confidence 9 57877754445 899999999999999 56777777766543
No 106
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=3.3e-24 Score=215.81 Aligned_cols=318 Identities=22% Similarity=0.265 Sum_probs=219.9
Q ss_pred CCcHHHHHHHHHHhc----CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 121 EPTPIQAQGWPMALK----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
.|.|||++++.++.+ +...|+-.+||.|||.. ++..|..+...... -..+|||||. .+..||..++..|+
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~k~----~~paLIVCP~-Tii~qW~~E~~~w~ 278 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSGKL----TKPALIVCPA-TIIHQWMKEFQTWW 278 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhcccc----cCceEEEccH-HHHHHHHHHHHHhC
Confidence 469999999999863 45689999999999976 33344444443111 2449999998 78889999999998
Q ss_pred CCCCceEEEEECCCCchH--------H-----HHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCC
Q 010649 197 ASSKIKSTCIYGGVPKGP--------Q-----VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF 263 (505)
Q Consensus 197 ~~~~i~~~~~~gg~~~~~--------~-----~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~ 263 (505)
+. +++..+++..+... . .+.......|+|+|++.+.- ..+...-..++++|+||.|++.+..
T Consensus 279 p~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d~l~~~~W~y~ILDEGH~IrNpn- 353 (923)
T KOG0387|consen 279 PP--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGDDLLGILWDYVILDEGHRIRNPN- 353 (923)
T ss_pred cc--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCcccccccccEEEecCcccccCCc-
Confidence 66 77888887665211 1 11112345799999987632 2223344568899999999998763
Q ss_pred HHHHHHHHHhcCCCCceEEecCCCh-HHHHHHH-----------------------------------------------
Q 010649 264 EPQIKKILSQIRPDRQTLYWSATWP-KEVEHLA----------------------------------------------- 295 (505)
Q Consensus 264 ~~~~~~il~~~~~~~~~v~~SAT~~-~~~~~~~----------------------------------------------- 295 (505)
.++...+..++ ..+.+.+|+|+- +.+.++.
T Consensus 354 -s~islackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~ 431 (923)
T KOG0387|consen 354 -SKISLACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVA 431 (923)
T ss_pred -cHHHHHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHH
Confidence 44555555553 455566788831 1111110
Q ss_pred -----HHHc-------------cC-CcEEEE-----------------------------------------cCCCcccc
Q 010649 296 -----RQYL-------------YN-PYKVII-----------------------------------------GSPDLKAN 315 (505)
Q Consensus 296 -----~~~~-------------~~-~~~~~~-----------------------------------------~~~~~~~~ 315 (505)
.-|+ .. ...+.+ .-+.+...
T Consensus 432 Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~ 511 (923)
T KOG0387|consen 432 LRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDR 511 (923)
T ss_pred HHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccC
Confidence 0000 00 000000 00000000
Q ss_pred c--ceeeee---eccChhHHHHHHHHHHHhhcC-CCeEEEEeCCcccHHHHHHHHH-hCCCCeEEEcCCCCHHHHHHHHH
Q 010649 316 H--AIRQHV---DIVSESQKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLR-MDGWPALSIHGDKSQAERDWVLS 388 (505)
Q Consensus 316 ~--~~~~~~---~~~~~~~k~~~l~~~l~~~~~-~~~vlVF~~~~~~~~~l~~~L~-~~~~~~~~lhg~~~~~~r~~~~~ 388 (505)
. ...+.. -......|+..+..+|..+.. +.++|+|..++...+.|...|. ..++.++.+.|..+...|..+++
T Consensus 512 ~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd 591 (923)
T KOG0387|consen 512 RDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVD 591 (923)
T ss_pred cccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHH
Confidence 0 000000 123346788888888887654 5599999999999999999999 58999999999999999999999
Q ss_pred HHhcCCCc--EEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEE--EecCc
Q 010649 389 EFKAGKSP--IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYT--FFTAA 451 (505)
Q Consensus 389 ~f~~g~~~--vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~--~~~~~ 451 (505)
+|.+++.. +|++|.+.+-|+|+..++-||.||+.|||++-.|..-|+.|.||+..+++ +++..
T Consensus 592 ~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~g 658 (923)
T KOG0387|consen 592 RFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAG 658 (923)
T ss_pred hhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCC
Confidence 99987544 67799999999999999999999999999999999999999999865444 55544
No 107
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.93 E-value=3.9e-24 Score=213.12 Aligned_cols=306 Identities=23% Similarity=0.303 Sum_probs=212.0
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH-hcCCCCc
Q 010649 123 TPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASSKI 201 (505)
Q Consensus 123 ~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~-~~~~~~i 201 (505)
+.+-.+.+..+..++-+|+.++||||||+. +-+.+.+..+... + ++.+..|+|.-|..+++.... .+...+-
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQ----ipQyL~eaG~~~~--g-~I~~TQPRRVAavslA~RVAeE~~~~lG~ 125 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQ----IPQYLAEAGFASS--G-KIACTQPRRVAAVSLAKRVAEEMGCQLGE 125 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCcccc----HhHHHHhcccccC--C-cEEeecCchHHHHHHHHHHHHHhCCCcCc
Confidence 344556677777888899999999999986 3344444332222 3 389999999777666655443 3333332
Q ss_pred eEEE--EECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcch-hhcCCC-HHHHHHHHHhcCCC
Q 010649 202 KSTC--IYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR-MLDMGF-EPQIKKILSQIRPD 277 (505)
Q Consensus 202 ~~~~--~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~-~~~~~~-~~~~~~il~~~~~~ 277 (505)
.|.. -+.+.. .....|.+.|.+.|++.+..+ ..|+++++||+||||. -+..+. .-.+++++ .-+++
T Consensus 126 ~VGY~IRFed~t--------s~~TrikymTDG~LLRE~l~D-p~LskYsvIIlDEAHERsl~TDiLlGlLKki~-~~R~~ 195 (674)
T KOG0922|consen 126 EVGYTIRFEDST--------SKDTRIKYMTDGMLLREILKD-PLLSKYSVIILDEAHERSLHTDILLGLLKKIL-KKRPD 195 (674)
T ss_pred eeeeEEEecccC--------CCceeEEEecchHHHHHHhcC-CccccccEEEEechhhhhhHHHHHHHHHHHHH-hcCCC
Confidence 2221 111111 124689999999999887764 4589999999999993 222221 22333333 33577
Q ss_pred CceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHh---hcCCCeEEEEeCCc
Q 010649 278 RQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLED---IMDGSRILIFMDTK 354 (505)
Q Consensus 278 ~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~~vlVF~~~~ 354 (505)
.++|.||||+. .+.+...|...|+..+-++.. .++..+...+..+-....+..+.+ ..+.+-+|||....
T Consensus 196 LklIimSATld--a~kfS~yF~~a~i~~i~GR~f-----PVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGq 268 (674)
T KOG0922|consen 196 LKLIIMSATLD--AEKFSEYFNNAPILTIPGRTF-----PVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQ 268 (674)
T ss_pred ceEEEEeeeec--HHHHHHHhcCCceEeecCCCC-----ceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCH
Confidence 89999999984 455666565556665544432 233333333444444333333222 23456899999999
Q ss_pred ccHHHHHHHHHhC------CC--CeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCC-----
Q 010649 355 KGCDQITRQLRMD------GW--PALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF----- 421 (505)
Q Consensus 355 ~~~~~l~~~L~~~------~~--~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~----- 421 (505)
++.+.+++.|.+. +. -+..+||.++.+++..+++.-..|..+|+++|+++++.+.||++.+||+-+.
T Consensus 269 eEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~ 348 (674)
T KOG0922|consen 269 EEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKK 348 (674)
T ss_pred HHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEe
Confidence 9999999999764 11 2467999999999999999888899999999999999999999999996553
Q ss_pred -------------CCChhHHHHhhcccccCCCccEEEEEecCccH
Q 010649 422 -------------PGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (505)
Q Consensus 422 -------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 453 (505)
|-|.++-.||.|||||. .+|.||.++++++.
T Consensus 349 y~p~~g~~~L~v~~ISkasA~QRaGRAGRt-~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 349 YNPRTGLDSLIVVPISKASANQRAGRAGRT-GPGKCYRLYTESAY 392 (674)
T ss_pred eccccCccceeEEechHHHHhhhcccCCCC-CCceEEEeeeHHHH
Confidence 34889999999999999 58999999998754
No 108
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.92 E-value=4e-24 Score=223.89 Aligned_cols=328 Identities=20% Similarity=0.276 Sum_probs=219.9
Q ss_pred CCCcHHHHHHHHHHh----cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010649 120 FEPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l----~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 195 (505)
.+|+.||.+.+++++ .+.++|+..++|.|||+. .+..|..+.... .-.|| .|||+|...+. .|..++..+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~---~~~gp-flvvvplst~~-~W~~ef~~w 442 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSL---QIHGP-FLVVVPLSTIT-AWEREFETW 442 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhh---hccCC-eEEEeehhhhH-HHHHHHHHH
Confidence 589999999999876 478999999999999976 333455444321 11245 89999986665 488888888
Q ss_pred cCCCCceEEEEECCCCchHHHHHHh----c-----CCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHH
Q 010649 196 GASSKIKSTCIYGGVPKGPQVRDLQ----K-----GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQ 266 (505)
Q Consensus 196 ~~~~~i~~~~~~gg~~~~~~~~~~~----~-----~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~ 266 (505)
. .+++++++|.......++... . ..+++++|++.++.-.. .+.--.+.++++||||++.+. ...
T Consensus 443 ~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahrLkN~--~~~ 515 (1373)
T KOG0384|consen 443 T---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHRLKND--ESK 515 (1373)
T ss_pred h---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhhcCch--HHH
Confidence 6 578888898877766655432 1 36899999988754221 111224568999999999865 344
Q ss_pred HHHHHHhcCCCCceEEecCCCh-HHHHHHHHHH-ccCC------------------------------------------
Q 010649 267 IKKILSQIRPDRQTLYWSATWP-KEVEHLARQY-LYNP------------------------------------------ 302 (505)
Q Consensus 267 ~~~il~~~~~~~~~v~~SAT~~-~~~~~~~~~~-~~~~------------------------------------------ 302 (505)
+...+..+..+ ..|++|+|+- +.+.++.... +..|
T Consensus 516 l~~~l~~f~~~-~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvek 594 (1373)
T KOG0384|consen 516 LYESLNQFKMN-HRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEK 594 (1373)
T ss_pred HHHHHHHhccc-ceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhcc
Confidence 44445555433 3466788842 2222222111 0000
Q ss_pred -----cEEEEcCC--C---------------------cccccceeeee----ecc-------------------------
Q 010649 303 -----YKVIIGSP--D---------------------LKANHAIRQHV----DIV------------------------- 325 (505)
Q Consensus 303 -----~~~~~~~~--~---------------------~~~~~~~~~~~----~~~------------------------- 325 (505)
...++... . -.....+...+ .++
T Consensus 595 slp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~ 674 (1373)
T KOG0384|consen 595 SLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEA 674 (1373)
T ss_pred CCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHH
Confidence 00000000 0 00000000000 000
Q ss_pred -----ChhHHHHHHHHHHHhhcC-CCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcC---CCc
Q 010649 326 -----SESQKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG---KSP 396 (505)
Q Consensus 326 -----~~~~k~~~l~~~l~~~~~-~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g---~~~ 396 (505)
..+.|+..|..+|-.+.. +++||||.+..+..+.|+++|...+++...|.|.+..+.|+.+++.|..- ...
T Consensus 675 L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFv 754 (1373)
T KOG0384|consen 675 LQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFV 754 (1373)
T ss_pred HHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceE
Confidence 011222223344444444 46999999999999999999999999999999999999999999999854 566
Q ss_pred EEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEE--EEEecCccHHHHHHHHHHH
Q 010649 397 IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTA--YTFFTAANARFAKELITIL 463 (505)
Q Consensus 397 vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~--~~~~~~~~~~~~~~l~~~l 463 (505)
+|+||.+.+-|||+..++.||+||..|||..-+|...||+|.||+..+ |-|++.+ .+-+++++..
T Consensus 755 FLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~--TvEeEilERA 821 (1373)
T KOG0384|consen 755 FLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN--TVEEEILERA 821 (1373)
T ss_pred EEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC--chHHHHHHHH
Confidence 999999999999999999999999999999999999999999998654 5566655 3344444433
No 109
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.92 E-value=4.9e-23 Score=216.16 Aligned_cols=317 Identities=21% Similarity=0.254 Sum_probs=224.3
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH-hcCCC
Q 010649 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASS 199 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~-~~~~~ 199 (505)
..+..+.+.+.++.+++.++++++||+|||+...-.++....... ....+++-.|+|--|..+++.+.. .+...
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-----~~~~IicTQPRRIsAIsvAeRVa~ER~~~~ 247 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-----AACNIICTQPRRISAISVAERVAKERGESL 247 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-----CCCeEEecCCchHHHHHHHHHHHHHhcccc
Confidence 446778888899999999999999999999986666666665532 467799999998777777776554 23233
Q ss_pred CceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcc-hhhcCCCHHHHHHHHHhcCCCC
Q 010649 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD-RMLDMGFEPQIKKILSQIRPDR 278 (505)
Q Consensus 200 ~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah-~~~~~~~~~~~~~il~~~~~~~ 278 (505)
+-.|..-....+. ......+++||.+.|++.+.. ...+..++++|+||+| +-.+.+|.-.+.+.+...+++.
T Consensus 248 g~~VGYqvrl~~~------~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~L 320 (924)
T KOG0920|consen 248 GEEVGYQVRLESK------RSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDL 320 (924)
T ss_pred CCeeeEEEeeecc------cCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCc
Confidence 3222221111111 122367999999999999988 5568899999999999 4556667777777777778999
Q ss_pred ceEEecCCChHHHHHHHHHHccCCcEEEEcCCCccc--------------ccceeee------------eeccChhHHHH
Q 010649 279 QTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKA--------------NHAIRQH------------VDIVSESQKYN 332 (505)
Q Consensus 279 ~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~------------~~~~~~~~k~~ 332 (505)
++|+||||+. .+.+...|...|...+.+...... .....+. +.....+-...
T Consensus 321 kvILMSAT~d--ae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~ 398 (924)
T KOG0920|consen 321 KVILMSATLD--AELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYD 398 (924)
T ss_pred eEEEeeeecc--hHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHH
Confidence 9999999986 333433343333333322111000 0000000 11111122334
Q ss_pred HHHHHHHh---hcCCCeEEEEeCCcccHHHHHHHHHhC-------CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 010649 333 KLVKLLED---IMDGSRILIFMDTKKGCDQITRQLRMD-------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (505)
Q Consensus 333 ~l~~~l~~---~~~~~~vlVF~~~~~~~~~l~~~L~~~-------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~ 402 (505)
.+.+++.- ....+.+|||.+...++..+.+.|... .+-+..+|+.|+..+++.++...-.|..+|++||+
T Consensus 399 Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTN 478 (924)
T KOG0920|consen 399 LIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATN 478 (924)
T ss_pred HHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhh
Confidence 44444443 333568999999999999999999642 24567899999999999999999999999999999
Q ss_pred cccccCCCCCCCEEEEcCC--------CC----------ChhHHHHhhcccccCCCccEEEEEecCcc
Q 010649 403 VAARGLDVKDVKYVINYDF--------PG----------SLEDYVHRIGRTGRAGAKGTAYTFFTAAN 452 (505)
Q Consensus 403 ~~~~Gidi~~~~~Vi~~~~--------p~----------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 452 (505)
+++.+|.|++|-+||+... -. |.+.-.||.|||||. ++|.||.+++...
T Consensus 479 IAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 479 IAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSR 545 (924)
T ss_pred hHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhh
Confidence 9999999999999995543 21 567788999999999 8999999999764
No 110
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.92 E-value=9.6e-23 Score=210.54 Aligned_cols=322 Identities=21% Similarity=0.235 Sum_probs=214.5
Q ss_pred CCcHHHHHHHHHHhc---CC-------cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHH
Q 010649 121 EPTPIQAQGWPMALK---GR-------DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQ 190 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~---~~-------~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~ 190 (505)
.++|+|.+++..+.. |. .+|+...+|+|||+..+. +++.++.+.+.....-.+.|||+|. .|+..|.+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~Is-flwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCIS-FIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHH-HHHHHHHhCcCccccccccEEEccH-HHHHHHHH
Confidence 679999999998763 22 378889999999998544 5555555422211123679999997 79999999
Q ss_pred HHHHhcCCCCceEEEEECCCCc-hHH---HHH---HhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCC
Q 010649 191 ESTKFGASSKIKSTCIYGGVPK-GPQ---VRD---LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF 263 (505)
Q Consensus 191 ~~~~~~~~~~i~~~~~~gg~~~-~~~---~~~---~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~ 263 (505)
++.+|.....+....+++.... ... +.. -....-|++.+++.+.+.+.. ..+..+++||+||.|++.+.
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~-- 391 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNS-- 391 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccch--
Confidence 9999987667788888887664 111 110 111246889999998766553 34567899999999998876
Q ss_pred HHHHHHHHHhcCCCCceEEecCCCh-HH---------------------------------------------------H
Q 010649 264 EPQIKKILSQIRPDRQTLYWSATWP-KE---------------------------------------------------V 291 (505)
Q Consensus 264 ~~~~~~il~~~~~~~~~v~~SAT~~-~~---------------------------------------------------~ 291 (505)
...+.+.+..+.. ++.|++|+|+= ++ +
T Consensus 392 ~s~~~kaL~~l~t-~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL 470 (776)
T KOG0390|consen 392 DSLTLKALSSLKT-PRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQEL 470 (776)
T ss_pred hhHHHHHHHhcCC-CceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHH
Confidence 4566677777754 44577899931 01 1
Q ss_pred HHHHHHHcc-----------------------------------------------------------CCcEEEEcCCCc
Q 010649 292 EHLARQYLY-----------------------------------------------------------NPYKVIIGSPDL 312 (505)
Q Consensus 292 ~~~~~~~~~-----------------------------------------------------------~~~~~~~~~~~~ 312 (505)
..+...++. .|..+.......
T Consensus 471 ~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~ 550 (776)
T KOG0390|consen 471 RELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTE 550 (776)
T ss_pred HHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhccccccc
Confidence 111111110 000000000000
Q ss_pred ----ccc-------cceeeeeeccChhHHHHHHHHHHHhhcCC--CeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCC
Q 010649 313 ----KAN-------HAIRQHVDIVSESQKYNKLVKLLEDIMDG--SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 379 (505)
Q Consensus 313 ----~~~-------~~~~~~~~~~~~~~k~~~l~~~l~~~~~~--~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~ 379 (505)
..+ ..............|+..|..++...... .++++..+.+...+.+....+-.|+.+..+||.++
T Consensus 551 ~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~ 630 (776)
T KOG0390|consen 551 KEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTS 630 (776)
T ss_pred ccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCc
Confidence 000 00000001111245666666666443321 24445556666667777777777999999999999
Q ss_pred HHHHHHHHHHHhcCCCc---EEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEec
Q 010649 380 QAERDWVLSEFKAGKSP---IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT 449 (505)
Q Consensus 380 ~~~r~~~~~~f~~g~~~---vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 449 (505)
..+|+.+++.|++.... +|.+|.+.+.||++-+++.||.+|++|||+.-.|++.|+.|.||+..|++|-.
T Consensus 631 ~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrL 703 (776)
T KOG0390|consen 631 IKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRL 703 (776)
T ss_pred hHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEe
Confidence 99999999999975433 56678999999999999999999999999999999999999999987776544
No 111
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.91 E-value=3e-23 Score=211.46 Aligned_cols=296 Identities=21% Similarity=0.224 Sum_probs=193.2
Q ss_pred CCCcHHHHHHHHHHh----cCC-cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 010649 120 FEPTPIQAQGWPMAL----KGR-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l----~~~-~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~ 194 (505)
..++++|..||..+. +|+ .+|+++.||+|||.+++. ++..|... +..++||+|+.+++|+.|....+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r~-----~~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIKS-----GWVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHhc-----chhheeeEEechHHHHHHHHHHHHH
Confidence 368999999998654 343 499999999999998655 56666553 3467899999999999999999999
Q ss_pred hcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHcc-----CCccCCccEEEEcCcchhhcCCCHHHHHH
Q 010649 195 FGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-----NTNLRRVTYLVLDEADRMLDMGFEPQIKK 269 (505)
Q Consensus 195 ~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~-----~~~l~~~~~lVlDEah~~~~~~~~~~~~~ 269 (505)
|.+..... ..+.+ ... ...++|.|+|++++...+... .+....|++||+|||||-. ......
T Consensus 238 ~~P~~~~~-n~i~~-~~~-------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~~~~~ 304 (875)
T COG4096 238 FLPFGTKM-NKIED-KKG-------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YSEWSS 304 (875)
T ss_pred hCCCccce-eeeec-ccC-------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----HhhhHH
Confidence 87663321 11111 111 125799999999998887654 3445568999999999954 445557
Q ss_pred HHHhcCCCCceEEecCCChHHHHHHHHHHc-cCCcEEE------------------E--c--CCCcccc----------c
Q 010649 270 ILSQIRPDRQTLYWSATWPKEVEHLARQYL-YNPYKVI------------------I--G--SPDLKAN----------H 316 (505)
Q Consensus 270 il~~~~~~~~~v~~SAT~~~~~~~~~~~~~-~~~~~~~------------------~--~--~~~~~~~----------~ 316 (505)
|+..+..-. +++|||+...+..-.-.|. ..|.... + . ....... .
T Consensus 305 I~dYFdA~~--~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~ 382 (875)
T COG4096 305 ILDYFDAAT--QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGE 382 (875)
T ss_pred HHHHHHHHH--HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcc
Confidence 777764433 3449998764433322232 2222211 1 0 0000000 0
Q ss_pred ce---eeeeeccC------hhHHHHHHHHHHHhhcC-------CCeEEEEeCCcccHHHHHHHHHhC-----CCCeEEEc
Q 010649 317 AI---RQHVDIVS------ESQKYNKLVKLLEDIMD-------GSRILIFMDTKKGCDQITRQLRMD-----GWPALSIH 375 (505)
Q Consensus 317 ~~---~~~~~~~~------~~~k~~~l~~~l~~~~~-------~~~vlVF~~~~~~~~~l~~~L~~~-----~~~~~~lh 375 (505)
.+ .+.+...+ -......+...+.+.+. -.|+||||.+..+|+.+...|... +--+..|.
T Consensus 383 ~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT 462 (875)
T COG4096 383 AIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKIT 462 (875)
T ss_pred ccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEe
Confidence 00 00000000 01122333333333322 248999999999999999999764 23366777
Q ss_pred CCCCHHHHHHHHHHHhc-CCC-cEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccC
Q 010649 376 GDKSQAERDWVLSEFKA-GKS-PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA 438 (505)
Q Consensus 376 g~~~~~~r~~~~~~f~~-g~~-~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~ 438 (505)
++-.+. ...++.|.. .+. .|.|+.+++.+|||+|.|..+|++....|...|.||+||.-|.
T Consensus 463 ~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 463 GDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred ccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 765433 334455543 343 4777779999999999999999999999999999999999994
No 112
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=1.6e-23 Score=206.71 Aligned_cols=308 Identities=22% Similarity=0.305 Sum_probs=222.9
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH-h-
Q 010649 118 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-F- 195 (505)
Q Consensus 118 ~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~-~- 195 (505)
.....+++-.+.+.++..++.+||.++||||||.. +| +.+.+..+.. .++++-+..|.|.-|..++....+ .
T Consensus 262 ksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQ--iP--QyL~EaGytk--~gk~IgcTQPRRVAAmSVAaRVA~EMg 335 (902)
T KOG0923|consen 262 KSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQ--IP--QYLYEAGYTK--GGKKIGCTQPRRVAAMSVAARVAEEMG 335 (902)
T ss_pred hcCCchhhHHHHHHHHHhCcEEEEEcCCCCCcccc--cc--HHHHhccccc--CCceEeecCcchHHHHHHHHHHHHHhC
Confidence 34466788888999999999999999999999985 44 4444433222 255688999999888887766554 2
Q ss_pred ---cCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcc-hhhcCCCHHHHHHHH
Q 010649 196 ---GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD-RMLDMGFEPQIKKIL 271 (505)
Q Consensus 196 ---~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah-~~~~~~~~~~~~~il 271 (505)
++..+..+- +-+. .....-|-++|.++|++.+.. ...|.++++||+|||| +-+..+..-.+-+-+
T Consensus 336 vkLG~eVGYsIR--FEdc--------TSekTvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL~TDILfgLvKDI 404 (902)
T KOG0923|consen 336 VKLGHEVGYSIR--FEDC--------TSEKTVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTLHTDILFGLVKDI 404 (902)
T ss_pred cccccccceEEE--eccc--------cCcceeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhhhhhHHHHHHHHH
Confidence 222222111 1110 112345779999999887765 4568899999999999 444433344444556
Q ss_pred HhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhh---cCCCeEE
Q 010649 272 SQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI---MDGSRIL 348 (505)
Q Consensus 272 ~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~~~~~vl 348 (505)
..++++..++++|||+. .+.+...|-.-|++..-+.. ..+...+...++.+-++..+..+.++ .+.+-+|
T Consensus 405 ar~RpdLKllIsSAT~D--AekFS~fFDdapIF~iPGRR-----yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDIL 477 (902)
T KOG0923|consen 405 ARFRPDLKLLISSATMD--AEKFSAFFDDAPIFRIPGRR-----YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDIL 477 (902)
T ss_pred HhhCCcceEEeeccccC--HHHHHHhccCCcEEeccCcc-----cceeeecccCCchhHHHHHHhhheeeEeccCCccEE
Confidence 67789999999999984 45565555555665544332 23445555666766666655554443 3446799
Q ss_pred EEeCCcccHHHHHHHHHhC---------CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEc
Q 010649 349 IFMDTKKGCDQITRQLRMD---------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINY 419 (505)
Q Consensus 349 VF~~~~~~~~~l~~~L~~~---------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~ 419 (505)
||....++.+.....|.+. .+-+..||+.++.+.+..+++--..|..+|++||+++++.|.|+++.+||+-
T Consensus 478 VFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDp 557 (902)
T KOG0923|consen 478 VFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDP 557 (902)
T ss_pred EEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecC
Confidence 9999998887777766542 3457789999999999999998889999999999999999999999999965
Q ss_pred CC------------------CCChhHHHHhhcccccCCCccEEEEEecC
Q 010649 420 DF------------------PGSLEDYVHRIGRTGRAGAKGTAYTFFTA 450 (505)
Q Consensus 420 ~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~ 450 (505)
+. |-|.++-.||.|||||.| +|.|+.+|+.
T Consensus 558 Gf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 558 GFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTA 605 (902)
T ss_pred ccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeech
Confidence 43 347788999999999995 8999999994
No 113
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.91 E-value=1.8e-22 Score=214.39 Aligned_cols=300 Identities=16% Similarity=0.150 Sum_probs=181.1
Q ss_pred CcHHHHHHHHHHhc----------CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHH
Q 010649 122 PTPIQAQGWPMALK----------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 191 (505)
Q Consensus 122 ~~~~Q~~~i~~~l~----------~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~ 191 (505)
++++|..|+..+.. .+..+++++||||||++++..+ ..+... ...+++|||+|+.+|..|+.+.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la-~~l~~~-----~~~~~vl~lvdR~~L~~Q~~~~ 312 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAA-RKALEL-----LKNPKVFFVVDRRELDYQLMKE 312 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHH-HHHHhh-----cCCCeEEEEECcHHHHHHHHHH
Confidence 78999999987642 2469999999999999866544 333321 2367899999999999999999
Q ss_pred HHHhcCCCCceEEEEECCCCchHHHHHHh-cCCcEEEeChHHHHHHHHcc--CCccCCc-cEEEEcCcchhhcCCCHHHH
Q 010649 192 STKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESH--NTNLRRV-TYLVLDEADRMLDMGFEPQI 267 (505)
Q Consensus 192 ~~~~~~~~~i~~~~~~gg~~~~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~--~~~l~~~-~~lVlDEah~~~~~~~~~~~ 267 (505)
+..++.... ....+.......+. ....|+|+|.++|...+... .....+. .+||+||||+.... .+
T Consensus 313 f~~~~~~~~------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~----~~ 382 (667)
T TIGR00348 313 FQSLQKDCA------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG----EL 382 (667)
T ss_pred HHhhCCCCC------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch----HH
Confidence 999864211 11112222222232 23689999999997644321 1111112 28999999997533 33
Q ss_pred HHHHHhcCCCCceEEecCCChHHHHHHH-HHHc---cCCcE-----------------EEEcCCCccc-ccce----eee
Q 010649 268 KKILSQIRPDRQTLYWSATWPKEVEHLA-RQYL---YNPYK-----------------VIIGSPDLKA-NHAI----RQH 321 (505)
Q Consensus 268 ~~il~~~~~~~~~v~~SAT~~~~~~~~~-~~~~---~~~~~-----------------~~~~~~~~~~-~~~~----~~~ 321 (505)
...+...-++...++||||+-....... ..+. .+++. .......... ...+ ...
T Consensus 383 ~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~ 462 (667)
T TIGR00348 383 AKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEI 462 (667)
T ss_pred HHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHH
Confidence 3444333356789999999843211100 1110 11111 0000000000 0000 000
Q ss_pred eec----cC-------------------hhHHHHHHHHHHHhh----cC--CCeEEEEeCCcccHHHHHHHHHhC-----
Q 010649 322 VDI----VS-------------------ESQKYNKLVKLLEDI----MD--GSRILIFMDTKKGCDQITRQLRMD----- 367 (505)
Q Consensus 322 ~~~----~~-------------------~~~k~~~l~~~l~~~----~~--~~~vlVF~~~~~~~~~l~~~L~~~----- 367 (505)
+.. .. .......+...+.++ .. ..+++|||.++.+|..+++.|.+.
T Consensus 463 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~ 542 (667)
T TIGR00348 463 FELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKF 542 (667)
T ss_pred HHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccccc
Confidence 000 00 001111222222111 12 368999999999999999988654
Q ss_pred CCCeEEEcCCCCHH---------------------HHHHHHHHHhc-CCCcEEEEcccccccCCCCCCCEEEEcCCCCCh
Q 010649 368 GWPALSIHGDKSQA---------------------ERDWVLSEFKA-GKSPIMTATDVAARGLDVKDVKYVINYDFPGSL 425 (505)
Q Consensus 368 ~~~~~~lhg~~~~~---------------------~r~~~~~~f~~-g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~ 425 (505)
+..++++++..+.. ....++++|++ +.++|||+++++.+|+|.|.+++++...+..+.
T Consensus 543 ~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~h 622 (667)
T TIGR00348 543 EASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKYH 622 (667)
T ss_pred CCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccccc
Confidence 23455666543322 22468889976 688999999999999999999999888776654
Q ss_pred hHHHHhhcccccC
Q 010649 426 EDYVHRIGRTGRA 438 (505)
Q Consensus 426 ~~~~Qr~GR~~R~ 438 (505)
.++|++||+.|.
T Consensus 623 -~LlQai~R~nR~ 634 (667)
T TIGR00348 623 -GLLQAIARTNRI 634 (667)
T ss_pred -HHHHHHHHhccc
Confidence 589999999994
No 114
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.91 E-value=4.5e-22 Score=205.93 Aligned_cols=290 Identities=23% Similarity=0.321 Sum_probs=196.6
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHH
Q 010649 109 YVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (505)
Q Consensus 109 ~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~ 188 (505)
.+.+.+++.-.+.|+..|.--...+..|+++-+.||||.|||.- .+.+-..+.. .+.++++|+||..|+.|+
T Consensus 70 ~~~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTf-g~~~sl~~a~-------kgkr~yii~PT~~Lv~Q~ 141 (1187)
T COG1110 70 EFEEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTF-GLLMSLYLAK-------KGKRVYIIVPTTTLVRQV 141 (1187)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHH-HHHHHHHHHh-------cCCeEEEEecCHHHHHHH
Confidence 34455555555599999999888999999999999999999964 3322222222 278899999999999999
Q ss_pred HHHHHHhcCCCC-ceEEE-EECCCCchH---HHHHHh-cCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCC
Q 010649 189 QQESTKFGASSK-IKSTC-IYGGVPKGP---QVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG 262 (505)
Q Consensus 189 ~~~~~~~~~~~~-i~~~~-~~gg~~~~~---~~~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~ 262 (505)
.+.+.+|....+ ..+.. +++..+..+ ....+. .+.||+|+|.+-|...+..-. -.+|+++++|++|.++..+
T Consensus 142 ~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~--~~kFdfifVDDVDA~Lkas 219 (1187)
T COG1110 142 YERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELS--KLKFDFIFVDDVDAILKAS 219 (1187)
T ss_pred HHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhc--ccCCCEEEEccHHHHHhcc
Confidence 999999976544 34433 444433332 233344 358999999877655544311 1478999999999765322
Q ss_pred -----------CHH-------HHHHHHHhc------------------------CCCCceEEecCCChHH--HHHHHHHH
Q 010649 263 -----------FEP-------QIKKILSQI------------------------RPDRQTLYWSATWPKE--VEHLARQY 298 (505)
Q Consensus 263 -----------~~~-------~~~~il~~~------------------------~~~~~~v~~SAT~~~~--~~~~~~~~ 298 (505)
|.. .+.++...+ .+..+++..|||..+. -..+.+.+
T Consensus 220 kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReL 299 (1187)
T COG1110 220 KNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFREL 299 (1187)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHH
Confidence 211 111111111 2446789999996432 22334444
Q ss_pred ccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCC---cccHHHHHHHHHhCCCCeEEEc
Q 010649 299 LYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDT---KKGCDQITRQLRMDGWPALSIH 375 (505)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~---~~~~~~l~~~L~~~~~~~~~lh 375 (505)
+.- .++..... ..++...+.. ..-...+.++++.+.. -.|||++. ++.++.++++|+..|+++..+|
T Consensus 300 lgF----evG~~~~~-LRNIvD~y~~---~~~~e~~~elvk~lG~--GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~ 369 (1187)
T COG1110 300 LGF----EVGSGGEG-LRNIVDIYVE---SESLEKVVELVKKLGD--GGLIFVPIDYGREKAEELAEYLRSHGINAELIH 369 (1187)
T ss_pred hCC----ccCccchh-hhheeeeecc---CccHHHHHHHHHHhCC--CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEee
Confidence 321 12221111 1122222212 2556667777777655 58999999 9999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEc----ccccccCCCCC-CCEEEEcCCCC
Q 010649 376 GDKSQAERDWVLSEFKAGKSPIMTAT----DVAARGLDVKD-VKYVINYDFPG 423 (505)
Q Consensus 376 g~~~~~~r~~~~~~f~~g~~~vLVaT----~~~~~Gidi~~-~~~Vi~~~~p~ 423 (505)
+. ....++.|..|+++|||++ .++-+|||+|. +.++|+++.|+
T Consensus 370 a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 370 AE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred cc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 94 3678999999999999976 57889999997 78999999883
No 115
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.91 E-value=7.1e-22 Score=207.42 Aligned_cols=135 Identities=20% Similarity=0.326 Sum_probs=119.1
Q ss_pred hhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Q 010649 327 ESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAA 405 (505)
Q Consensus 327 ~~~k~~~l~~~l~~~-~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~ 405 (505)
...++..+++.+... ..+.++||||++++.++.+++.|.+.++++..+|+++++.+|..+++.|+.|++.|||||++++
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~ 503 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLR 503 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhc
Confidence 344566677766654 3456999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCEEEEcC-----CCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHH
Q 010649 406 RGLDVKDVKYVINYD-----FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITI 462 (505)
Q Consensus 406 ~Gidi~~~~~Vi~~~-----~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~ 462 (505)
+|+|+|++++||++| .|.+..+|+||+||+||. ..|.+++|++..+..+...+.+.
T Consensus 504 rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 504 EGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred CCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 999999999999998 789999999999999998 68999999998776555555443
No 116
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=8.5e-23 Score=214.31 Aligned_cols=127 Identities=22% Similarity=0.360 Sum_probs=114.3
Q ss_pred cChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 010649 325 VSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 403 (505)
Q Consensus 325 ~~~~~k~~~l~~~l~~~-~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~ 403 (505)
.....|...+.+.+... ..+.++||||+|++.++.|++.|...++++..+|+ .+.+|+..+..|..+...|+|||++
T Consensus 578 ~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNM 655 (1025)
T PRK12900 578 KTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNM 655 (1025)
T ss_pred cCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccC
Confidence 44567889999988764 34569999999999999999999999999999997 6889999999999999999999999
Q ss_pred ccccCCCC---CCC-----EEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccH
Q 010649 404 AARGLDVK---DVK-----YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (505)
Q Consensus 404 ~~~Gidi~---~~~-----~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 453 (505)
++||+||+ .|. +||.+..|.|...|.|++||+||.|.+|.++.|++..|.
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 99999999 453 458999999999999999999999999999999998764
No 117
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.91 E-value=2.6e-22 Score=194.48 Aligned_cols=170 Identities=21% Similarity=0.298 Sum_probs=131.4
Q ss_pred CCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHh-hcCCCeEEEEeCCcc
Q 010649 277 DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLED-IMDGSRILIFMDTKK 355 (505)
Q Consensus 277 ~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~vlVF~~~~~ 355 (505)
..|+|++|||+.+.-.+.... .-+..++....+ +...+.+-+....++.|+.-++. ...+.++||-+=|++
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~---~vveQiIRPTGL-----lDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKk 457 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGG---NVVEQIIRPTGL-----LDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKK 457 (663)
T ss_pred cCCEEEEECCCChHHHHhccC---ceeEEeecCCCC-----CCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHH
Confidence 469999999987644333221 112222222221 12223333444455566655554 445679999999999
Q ss_pred cHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCC-----CChhHHHH
Q 010649 356 GCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFP-----GSLEDYVH 430 (505)
Q Consensus 356 ~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p-----~s~~~~~Q 430 (505)
.|+.|.++|.+.|+++..+|++...-+|.+++.+.+.|.++|||..+.+-+|+|+|.|.+|.++|.. .|-.+++|
T Consensus 458 mAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQ 537 (663)
T COG0556 458 MAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQ 537 (663)
T ss_pred HHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998865 48899999
Q ss_pred hhcccccCCCccEEEEEecCccHHH
Q 010649 431 RIGRTGRAGAKGTAYTFFTAANARF 455 (505)
Q Consensus 431 r~GR~~R~g~~g~~~~~~~~~~~~~ 455 (505)
-+|||.|. -.|.++++.+.-...+
T Consensus 538 tIGRAARN-~~GkvIlYAD~iT~sM 561 (663)
T COG0556 538 TIGRAARN-VNGKVILYADKITDSM 561 (663)
T ss_pred HHHHHhhc-cCCeEEEEchhhhHHH
Confidence 99999997 6899999988654433
No 118
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=1.1e-21 Score=204.17 Aligned_cols=318 Identities=20% Similarity=0.237 Sum_probs=217.9
Q ss_pred CCcHHHHHHHHHHhcC----CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 121 EPTPIQAQGWPMALKG----RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~~----~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
.+++-|+.++..+.+. ...++.+.||||||.+|+-.+-..+.. |+.+|||+|-.+|-.|+.+.++..+
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~--------GkqvLvLVPEI~Ltpq~~~rf~~rF 269 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ--------GKQVLVLVPEIALTPQLLARFKARF 269 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc--------CCEEEEEeccccchHHHHHHHHHHh
Confidence 6788899999998765 568999999999999988755444443 7889999999999999999998755
Q ss_pred CCCCceEEEEECCCCchHHHHHH----hcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhc--CC---CHHHH
Q 010649 197 ASSKIKSTCIYGGVPKGPQVRDL----QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD--MG---FEPQI 267 (505)
Q Consensus 197 ~~~~i~~~~~~gg~~~~~~~~~~----~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~--~~---~~~~~ 267 (505)
. .++.+++++.+..+....+ .....|+|+|-..+ ...+.++.+||+||-|--.- .. +...-
T Consensus 270 g---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARd 339 (730)
T COG1198 270 G---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARD 339 (730)
T ss_pred C---CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcCHHH
Confidence 3 5677788887766554333 34589999996554 45678999999999995332 11 22233
Q ss_pred HHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHH-----HHHHHHHHh-h
Q 010649 268 KKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKY-----NKLVKLLED-I 341 (505)
Q Consensus 268 ~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~l~~~l~~-~ 341 (505)
-.++..-..+.++|+-|||+.- +.+.+..-.....+.+......+.....+.+++..+..+. ..+++.+++ .
T Consensus 340 vA~~Ra~~~~~pvvLgSATPSL--ES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l 417 (730)
T COG1198 340 VAVLRAKKENAPVVLGSATPSL--ESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTL 417 (730)
T ss_pred HHHHHHHHhCCCEEEecCCCCH--HHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHH
Confidence 3344444578889999999854 4444432222233333222211212222333333222222 445555544 3
Q ss_pred cCCCeEEEEeCCcccH------------------------------------------------------------HHHH
Q 010649 342 MDGSRILIFMDTKKGC------------------------------------------------------------DQIT 361 (505)
Q Consensus 342 ~~~~~vlVF~~~~~~~------------------------------------------------------------~~l~ 361 (505)
..+.++|+|.|.+..+ +.++
T Consensus 418 ~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gterie 497 (730)
T COG1198 418 ERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIE 497 (730)
T ss_pred hcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHH
Confidence 4466899999887544 6666
Q ss_pred HHHHhC--CCCeEEEcCCCCHH--HHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCC------------Ch
Q 010649 362 RQLRMD--GWPALSIHGDKSQA--ERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPG------------SL 425 (505)
Q Consensus 362 ~~L~~~--~~~~~~lhg~~~~~--~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~------------s~ 425 (505)
+.|++. +.++..+.++.... .-+..+..|.+|+.+|||.|++++.|.|+|+++.|...|... ..
T Consensus 498 eeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~f 577 (730)
T COG1198 498 EELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTF 577 (730)
T ss_pred HHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHH
Confidence 666553 56677777776543 356789999999999999999999999999999987665432 34
Q ss_pred hHHHHhhcccccCCCccEEEEEecCccHHHHHH
Q 010649 426 EDYVHRIGRTGRAGAKGTAYTFFTAANARFAKE 458 (505)
Q Consensus 426 ~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~ 458 (505)
..+.|-.||+||.+.+|.+++-....+...+..
T Consensus 578 qll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~ 610 (730)
T COG1198 578 QLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQA 610 (730)
T ss_pred HHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHH
Confidence 567899999999999998887766655444333
No 119
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.90 E-value=1.4e-22 Score=211.67 Aligned_cols=323 Identities=20% Similarity=0.234 Sum_probs=219.7
Q ss_pred CCcHHHHHHHHHHh--c--CCcEEEEccCCCchHHHHHHHHHH-HHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010649 121 EPTPIQAQGWPMAL--K--GRDLIGIAETGSGKTLAYLLPAIV-HVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l--~--~~~~li~a~TGsGKT~~~~~~~l~-~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 195 (505)
.+|.||++.++++. . +-+.|+|.++|.|||+..+-.+.. +.........-.....|||||+ .|+--|..++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 56999999999864 2 457999999999999985533332 2222111112223348999997 7999999999999
Q ss_pred cCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcC
Q 010649 196 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR 275 (505)
Q Consensus 196 ~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~ 275 (505)
++. +++....|....+...+.--+..+|+|++|+.+.+-+.. +.-.++.|+|+||-|.|.+. ...+.+.+++++
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLR 1127 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHHHHh
Confidence 887 677777776555555555555679999999888643321 11235679999999988865 567777777776
Q ss_pred CCCceEEecCCChH-H-------------------------------------------------------------HHH
Q 010649 276 PDRQTLYWSATWPK-E-------------------------------------------------------------VEH 293 (505)
Q Consensus 276 ~~~~~v~~SAT~~~-~-------------------------------------------------------------~~~ 293 (505)
.+.+ +.+|+|+-. . +.+
T Consensus 1128 a~hR-LILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRR 1206 (1549)
T KOG0392|consen 1128 ANHR-LILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRR 1206 (1549)
T ss_pred hcce-EEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5554 557888210 0 011
Q ss_pred HHHHHccC-C-----------------------------cEEEEcCCCccccc---ceee---ee---------------
Q 010649 294 LARQYLYN-P-----------------------------YKVIIGSPDLKANH---AIRQ---HV--------------- 322 (505)
Q Consensus 294 ~~~~~~~~-~-----------------------------~~~~~~~~~~~~~~---~~~~---~~--------------- 322 (505)
+..+.+.+ | ....+......... ++-| +.
T Consensus 1207 lKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~h 1286 (1549)
T KOG0392|consen 1207 LKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVH 1286 (1549)
T ss_pred HHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCc
Confidence 11111111 0 00000000000000 0000 00
Q ss_pred -----------------eccChhHHHHHHHHHHHhhc---------------CCCeEEEEeCCcccHHHHHHHHHhCC--
Q 010649 323 -----------------DIVSESQKYNKLVKLLEDIM---------------DGSRILIFMDTKKGCDQITRQLRMDG-- 368 (505)
Q Consensus 323 -----------------~~~~~~~k~~~l~~~l~~~~---------------~~~~vlVF~~~~~~~~~l~~~L~~~~-- 368 (505)
..+....|+..|.++|.++. .++++||||+-+..++.+.+.|-+..
T Consensus 1287 p~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mp 1366 (1549)
T KOG0392|consen 1287 PDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMP 1366 (1549)
T ss_pred chHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcC
Confidence 00123567777888887643 23589999999999999999886653
Q ss_pred -CCeEEEcCCCCHHHHHHHHHHHhcC-CCcEEE-EcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEE-
Q 010649 369 -WPALSIHGDKSQAERDWVLSEFKAG-KSPIMT-ATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTA- 444 (505)
Q Consensus 369 -~~~~~lhg~~~~~~r~~~~~~f~~g-~~~vLV-aT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~- 444 (505)
+....+.|+.++.+|.++.++|+++ .++||+ +|.+.+-|+|+.+++.||+++-.|||..-.|.+.||+|.||+..+
T Consensus 1367 sVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVN 1446 (1549)
T KOG0392|consen 1367 SVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVN 1446 (1549)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeee
Confidence 3344789999999999999999998 788766 779999999999999999999999999999999999999998654
Q ss_pred -EEEecCc
Q 010649 445 -YTFFTAA 451 (505)
Q Consensus 445 -~~~~~~~ 451 (505)
|.+++..
T Consensus 1447 VyRlItrG 1454 (1549)
T KOG0392|consen 1447 VYRLITRG 1454 (1549)
T ss_pred eeeehhcc
Confidence 4455554
No 120
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=1.6e-22 Score=200.06 Aligned_cols=305 Identities=20% Similarity=0.265 Sum_probs=207.2
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH-hcCCCCc
Q 010649 123 TPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASSKI 201 (505)
Q Consensus 123 ~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~-~~~~~~i 201 (505)
...+.+.+..+..++-++++++||||||.. +.+.+....+. +...+-+..|.|.-|..++..+.. .+...+-
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTTQ----l~QyL~edGY~---~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~ 430 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTTQ----LAQYLYEDGYA---DNGMIGCTQPRRVAAISVAKRVAEEMGVTLGD 430 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchhh----hHHHHHhcccc---cCCeeeecCchHHHHHHHHHHHHHHhCCcccc
Confidence 344555555666778899999999999986 34455443332 234677888999888887776654 3222222
Q ss_pred eEEE--EECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcch-hhcCCCHHHHHHHHHhcCCCC
Q 010649 202 KSTC--IYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR-MLDMGFEPQIKKILSQIRPDR 278 (505)
Q Consensus 202 ~~~~--~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~-~~~~~~~~~~~~il~~~~~~~ 278 (505)
.|.. -+-+.. .....|-+.|.+.|++.... ...|.++++||+||||. -++.+..--+.+.+-.-+.+.
T Consensus 431 ~VGYsIRFEdvT--------~~~T~IkymTDGiLLrEsL~-d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdl 501 (1042)
T KOG0924|consen 431 TVGYSIRFEDVT--------SEDTKIKYMTDGILLRESLK-DRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDL 501 (1042)
T ss_pred ccceEEEeeecC--------CCceeEEEeccchHHHHHhh-hhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccc
Confidence 2211 111110 12346889999998876544 34478899999999994 333332223333334445789
Q ss_pred ceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhh---cCCCeEEEEeCCcc
Q 010649 279 QTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI---MDGSRILIFMDTKK 355 (505)
Q Consensus 279 ~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~~~~~vlVF~~~~~ 355 (505)
++|.+|||+ +.+.+...|...|...+-++.. .+...+...+-++..+..+...-.+ ...+-+|||....+
T Consensus 502 KliVtSATm--~a~kf~nfFgn~p~f~IpGRTy-----PV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqe 574 (1042)
T KOG0924|consen 502 KLIVTSATM--DAQKFSNFFGNCPQFTIPGRTY-----PVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQE 574 (1042)
T ss_pred eEEEeeccc--cHHHHHHHhCCCceeeecCCcc-----ceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCc
Confidence 999999998 4677777776677766655432 1222233333344343333322111 23457999999887
Q ss_pred cHHHHHHHH----Hh------CCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCC----
Q 010649 356 GCDQITRQL----RM------DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF---- 421 (505)
Q Consensus 356 ~~~~l~~~L----~~------~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~---- 421 (505)
..+..+..+ .+ .++.+..|++.++..-+.++++.-..|..+++|||+++++.+.||++.+||..++
T Consensus 575 diE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~k 654 (1042)
T KOG0924|consen 575 DIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLK 654 (1042)
T ss_pred chhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeee
Confidence 665554444 33 1577899999999999999999989999999999999999999999999997664
Q ss_pred --------------CCChhHHHHhhcccccCCCccEEEEEecCc
Q 010649 422 --------------PGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 451 (505)
Q Consensus 422 --------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 451 (505)
|-|.+.-.||.|||||. .+|.||-+|+++
T Consensus 655 vyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt-~pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 655 VYNPRIGMDALQIVPISQANADQRAGRAGRT-GPGTCYRLYTED 697 (1042)
T ss_pred ecccccccceeEEEechhccchhhccccCCC-CCcceeeehhhh
Confidence 45778889999999999 589999999984
No 121
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.90 E-value=7e-21 Score=208.55 Aligned_cols=346 Identities=19% Similarity=0.237 Sum_probs=212.2
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHH----HHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccH
Q 010649 107 PDYVMQEISKAGFFEPTPIQAQGWP----MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (505)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~Q~~~i~----~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~ 182 (505)
++...+.+...|| ++||.|.+.+. .+.+++++++.||||+|||++|++|++.++.. +.+++|.+||+
T Consensus 232 ~~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~--------~~~vvi~t~t~ 302 (850)
T TIGR01407 232 SSLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT--------EKPVVISTNTK 302 (850)
T ss_pred cHHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC--------CCeEEEEeCcH
Confidence 3456666666676 58999998766 44467889999999999999999999887652 45799999999
Q ss_pred HHHHHHHH-HHHHhcCCC--CceEEEEECCCCc---------------hHH-----------------------------
Q 010649 183 ELAVQIQQ-ESTKFGASS--KIKSTCIYGGVPK---------------GPQ----------------------------- 215 (505)
Q Consensus 183 ~La~Q~~~-~~~~~~~~~--~i~~~~~~gg~~~---------------~~~----------------------------- 215 (505)
+|..|+.. ++..+.... +++++.+.|+... ...
T Consensus 303 ~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~ 382 (850)
T TIGR01407 303 VLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGN 382 (850)
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcc
Confidence 99999865 444443322 3556555554221 000
Q ss_pred ---H------------------------HHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCC------
Q 010649 216 ---V------------------------RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG------ 262 (505)
Q Consensus 216 ---~------------------------~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~------ 262 (505)
+ +.....++|+||...-|.+.+......+....++||||||++.+..
T Consensus 383 ~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~~ 462 (850)
T TIGR01407 383 KMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQE 462 (850)
T ss_pred hhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhcc
Confidence 0 1111235899999998887765443335566899999999865210
Q ss_pred -C-----HHH----------------------------------------------------------------HHHHHH
Q 010649 263 -F-----EPQ----------------------------------------------------------------IKKILS 272 (505)
Q Consensus 263 -~-----~~~----------------------------------------------------------------~~~il~ 272 (505)
+ ... +...+.
T Consensus 463 ~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~ 542 (850)
T TIGR01407 463 ELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDL 542 (850)
T ss_pred eeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 0 000 000000
Q ss_pred h-----------c-------------------------------------CCCCceEEecCCChH--HHHHHHHHHccCC
Q 010649 273 Q-----------I-------------------------------------RPDRQTLYWSATWPK--EVEHLARQYLYNP 302 (505)
Q Consensus 273 ~-----------~-------------------------------------~~~~~~v~~SAT~~~--~~~~~~~~~~~~~ 302 (505)
. + +....+|++|||+.. ....+.+.+..+.
T Consensus 543 ~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~ 622 (850)
T TIGR01407 543 ALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTD 622 (850)
T ss_pred HHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCc
Confidence 0 0 012467899999863 1233333332221
Q ss_pred cE-EEE-cCCCcccccceeeee--ec-----cChhHHHHHHHHHHHhh--cCCCeEEEEeCCcccHHHHHHHHHh----C
Q 010649 303 YK-VII-GSPDLKANHAIRQHV--DI-----VSESQKYNKLVKLLEDI--MDGSRILIFMDTKKGCDQITRQLRM----D 367 (505)
Q Consensus 303 ~~-~~~-~~~~~~~~~~~~~~~--~~-----~~~~~k~~~l~~~l~~~--~~~~~vlVF~~~~~~~~~l~~~L~~----~ 367 (505)
.. ..+ .++... ..+..-.+ .. .+...-...+.+.|.+. ...+++|||+++.+.++.++..|.. .
T Consensus 623 ~~~~~~~~spf~~-~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~ 701 (850)
T TIGR01407 623 VHFNTIEPTPLNY-AENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFE 701 (850)
T ss_pred cccceecCCCCCH-HHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhcccc
Confidence 11 112 122110 11111010 01 11222333444444433 1346899999999999999999975 2
Q ss_pred CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCC--EEEEcCCCC----------------------
Q 010649 368 GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVK--YVINYDFPG---------------------- 423 (505)
Q Consensus 368 ~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~--~Vi~~~~p~---------------------- 423 (505)
+++ .+..+.. ..|..+++.|++++..||++|+.+.+|||+|+.. +||...+|.
T Consensus 702 ~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~ 778 (850)
T TIGR01407 702 GYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNP 778 (850)
T ss_pred Cce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCc
Confidence 333 3333333 4788999999999999999999999999999865 567666654
Q ss_pred --------ChhHHHHhhcccccCCCccEEEEEecCc--cHHHHHHHHHHHHH
Q 010649 424 --------SLEDYVHRIGRTGRAGAKGTAYTFFTAA--NARFAKELITILEE 465 (505)
Q Consensus 424 --------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~--~~~~~~~l~~~l~~ 465 (505)
....+.|.+||+-|..++.-++++++.. ...+-+.+.+.|..
T Consensus 779 f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp~ 830 (850)
T TIGR01407 779 FYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLPE 830 (850)
T ss_pred hHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCCC
Confidence 1234569999999987765556666654 45566666666543
No 122
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.90 E-value=2.7e-21 Score=204.64 Aligned_cols=146 Identities=19% Similarity=0.311 Sum_probs=125.1
Q ss_pred hHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Q 010649 328 SQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAAR 406 (505)
Q Consensus 328 ~~k~~~l~~~l~~~~-~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~ 406 (505)
..++..+++.|.... .+.++||||++++.++.++..|.+.++++..+|+++++.+|..+++.|+.|++.|||||+++++
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~r 508 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLRE 508 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhC
Confidence 345666666666643 4568999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEcCC-----CCChhHHHHhhcccccCCCccEEEEEecCc---------cHHHHHHHHHHHHHhCCCCCH
Q 010649 407 GLDVKDVKYVINYDF-----PGSLEDYVHRIGRTGRAGAKGTAYTFFTAA---------NARFAKELITILEEAGQKVSP 472 (505)
Q Consensus 407 Gidi~~~~~Vi~~~~-----p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~---------~~~~~~~l~~~l~~~~~~i~~ 472 (505)
|+|+|++++||++|. |.+..+|+||+||+||. ..|.+++|++.. +....+++...+......+|.
T Consensus 509 Gfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 587 (652)
T PRK05298 509 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPK 587 (652)
T ss_pred CccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCCh
Confidence 999999999999885 78999999999999996 789999999953 445556666666666666776
Q ss_pred HH
Q 010649 473 EL 474 (505)
Q Consensus 473 ~l 474 (505)
..
T Consensus 588 ~~ 589 (652)
T PRK05298 588 TI 589 (652)
T ss_pred hH
Confidence 55
No 123
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.90 E-value=3.4e-22 Score=201.16 Aligned_cols=319 Identities=22% Similarity=0.282 Sum_probs=220.5
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 121 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l----~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
+|-+||.-.++++. ++-+.|+..++|.|||.. +++.+..+..... .+| -|||||+..|- .|..++.+|+
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~----~gp-HLVVvPsSTle-NWlrEf~kwC 471 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGN----PGP-HLVVVPSSTLE-NWLREFAKWC 471 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCC----CCC-cEEEecchhHH-HHHHHHHHhC
Confidence 58899999999864 345789999999999977 4456666665321 244 79999997775 5899999999
Q ss_pred CCCCceEEEEECCCCchHHHHHHh----cCCcEEEeChHHHHHHHH-ccCCccCCccEEEEcCcchhhcCCCHHHHHHHH
Q 010649 197 ASSKIKSTCIYGGVPKGPQVRDLQ----KGVEIVIATPGRLIDMLE-SHNTNLRRVTYLVLDEADRMLDMGFEPQIKKIL 271 (505)
Q Consensus 197 ~~~~i~~~~~~gg~~~~~~~~~~~----~~~~Iiv~T~~~l~~~l~-~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il 271 (505)
+. ++|..+||....+.+++... .+++|+++||.....--. +..+.-.+|+++|+||+|.+.++. ...+..+.
T Consensus 472 Ps--l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM 548 (941)
T KOG0389|consen 472 PS--LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLM 548 (941)
T ss_pred Cc--eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhc
Confidence 77 78889999876666555432 258999999965531100 011123467899999999988875 45555544
Q ss_pred HhcCCCCceEEecCCCh-HHHHHH--------------------------------------------------------
Q 010649 272 SQIRPDRQTLYWSATWP-KEVEHL-------------------------------------------------------- 294 (505)
Q Consensus 272 ~~~~~~~~~v~~SAT~~-~~~~~~-------------------------------------------------------- 294 (505)
.- +..+.|++|+|+- +++.++
T Consensus 549 ~I--~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILR 626 (941)
T KOG0389|consen 549 SI--NANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILR 626 (941)
T ss_pred cc--cccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHH
Confidence 32 3455678888831 000000
Q ss_pred --HHHHccC-C--cEEE-E--------------------cCCCcccc-----------------cce--eeee-------
Q 010649 295 --ARQYLYN-P--YKVI-I--------------------GSPDLKAN-----------------HAI--RQHV------- 322 (505)
Q Consensus 295 --~~~~~~~-~--~~~~-~--------------------~~~~~~~~-----------------~~~--~~~~------- 322 (505)
....+.+ | ...+ . .......+ +.+ ...+
T Consensus 627 R~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~ 706 (941)
T KOG0389|consen 627 RLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRK 706 (941)
T ss_pred HHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHH
Confidence 0000000 0 0000 0 00000000 000 0000
Q ss_pred ------------------------------------------------eccChhHHHHHHHHHHHhhcC-CCeEEEEeCC
Q 010649 323 ------------------------------------------------DIVSESQKYNKLVKLLEDIMD-GSRILIFMDT 353 (505)
Q Consensus 323 ------------------------------------------------~~~~~~~k~~~l~~~l~~~~~-~~~vlVF~~~ 353 (505)
...-.+.|...|..+|.+..+ +.+||||...
T Consensus 707 mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQF 786 (941)
T KOG0389|consen 707 MAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQF 786 (941)
T ss_pred HHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHH
Confidence 000135677777778877654 4699999999
Q ss_pred cccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCC-Cc-EEEEcccccccCCCCCCCEEEEcCCCCChhHHHHh
Q 010649 354 KKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGK-SP-IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHR 431 (505)
Q Consensus 354 ~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~-~~-vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr 431 (505)
-...+.|...|...++....+.|...-.+|+.+++.|...+ +. +|++|.+.+-|||+..+++||.+|...+|-+-.|.
T Consensus 787 TqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QA 866 (941)
T KOG0389|consen 787 TQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQA 866 (941)
T ss_pred HHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchh
Confidence 99999999999999999999999999999999999999764 33 67899999999999999999999999999999999
Q ss_pred hcccccCCCccEEEE--EecCc
Q 010649 432 IGRTGRAGAKGTAYT--FFTAA 451 (505)
Q Consensus 432 ~GR~~R~g~~g~~~~--~~~~~ 451 (505)
-.|++|.||...+.+ +++.+
T Consensus 867 EDRcHRvGQtkpVtV~rLItk~ 888 (941)
T KOG0389|consen 867 EDRCHRVGQTKPVTVYRLITKS 888 (941)
T ss_pred HHHHHhhCCcceeEEEEEEecC
Confidence 999999999865544 55554
No 124
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=5.1e-21 Score=195.75 Aligned_cols=315 Identities=19% Similarity=0.192 Sum_probs=219.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010649 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~ 200 (505)
.|++.|.-+.-.+++| -|+.+.||.|||+++.+|++...+. +..|.|++|+..||.|-++++..+....+
T Consensus 78 r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~--------G~~VhvvT~NdyLA~RDae~m~~ly~~LG 147 (764)
T PRK12326 78 RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQ--------GRRVHVITVNDYLARRDAEWMGPLYEALG 147 (764)
T ss_pred CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHc--------CCCeEEEcCCHHHHHHHHHHHHHHHHhcC
Confidence 6888888888877765 4779999999999999999888776 77799999999999999999999999999
Q ss_pred ceEEEEECCCCchHHHHHHhcCCcEEEeChHHHH-HHHHc------cCCccCCccEEEEcCcchhhc-C-----------
Q 010649 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-DMLES------HNTNLRRVTYLVLDEADRMLD-M----------- 261 (505)
Q Consensus 201 i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~-~~l~~------~~~~l~~~~~lVlDEah~~~~-~----------- 261 (505)
+.+.++.++.+...... .-.|||+.+|...|- ++|.. .......+.+.|+||+|.++- .
T Consensus 148 Lsvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~ 225 (764)
T PRK12326 148 LTVGWITEESTPEERRA--AYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGST 225 (764)
T ss_pred CEEEEECCCCCHHHHHH--HHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCCC
Confidence 99999988766543333 335899999987642 22221 122346688999999997541 0
Q ss_pred ---CCHHHHHHHHHhcCCC-------------------------------------------------------------
Q 010649 262 ---GFEPQIKKILSQIRPD------------------------------------------------------------- 277 (505)
Q Consensus 262 ---~~~~~~~~il~~~~~~------------------------------------------------------------- 277 (505)
.....+..++..+.++
T Consensus 226 ~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYi 305 (764)
T PRK12326 226 PGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYI 305 (764)
T ss_pred cchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 0111122222222110
Q ss_pred ---------------------------------------------------------CceEEecCCChHHHHHHHHHHcc
Q 010649 278 ---------------------------------------------------------RQTLYWSATWPKEVEHLARQYLY 300 (505)
Q Consensus 278 ---------------------------------------------------------~~~v~~SAT~~~~~~~~~~~~~~ 300 (505)
..+.+||+|......++.+-|..
T Consensus 306 V~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l 385 (764)
T PRK12326 306 VRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDL 385 (764)
T ss_pred EECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCC
Confidence 13345555554444444444433
Q ss_pred CCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCC
Q 010649 301 NPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 379 (505)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~ 379 (505)
+-..+ ........ .............|...+++.+.+. ..+.||||.|.+....+.++..|.+.+++..++++.-.
T Consensus 386 ~Vv~I--Ptnkp~~R-~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~ 462 (764)
T PRK12326 386 GVSVI--PPNKPNIR-EDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND 462 (764)
T ss_pred cEEEC--CCCCCcee-ecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch
Confidence 31111 11100000 0111233445677888887777654 55679999999999999999999999999999998754
Q ss_pred HHHHHHHHHHHhcC-CCcEEEEcccccccCCCCCC---------------CEEEEcCCCCChhHHHHhhcccccCCCccE
Q 010649 380 QAERDWVLSEFKAG-KSPIMTATDVAARGLDVKDV---------------KYVINYDFPGSLEDYVHRIGRTGRAGAKGT 443 (505)
Q Consensus 380 ~~~r~~~~~~f~~g-~~~vLVaT~~~~~Gidi~~~---------------~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~ 443 (505)
..+-+.+-+ .| .-.|.|||++++||.||.-- =+||-...+.|..--.|-.||+||.|.+|.
T Consensus 463 ~~EA~IIa~---AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGs 539 (764)
T PRK12326 463 AEEARIIAE---AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGS 539 (764)
T ss_pred HhHHHHHHh---cCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCc
Confidence 433222222 34 34499999999999999621 278888899999999999999999999999
Q ss_pred EEEEecCccH
Q 010649 444 AYTFFTAANA 453 (505)
Q Consensus 444 ~~~~~~~~~~ 453 (505)
+..|++-+|.
T Consensus 540 s~f~lSleDd 549 (764)
T PRK12326 540 SVFFVSLEDD 549 (764)
T ss_pred eeEEEEcchh
Confidence 9999987663
No 125
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=1.9e-22 Score=193.28 Aligned_cols=310 Identities=20% Similarity=0.227 Sum_probs=212.2
Q ss_pred CCCcHHHHHHHHHHhc-C--CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 120 FEPTPIQAQGWPMALK-G--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~-~--~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
..++|||+.++..+.- | +..||+.|+|+|||++-+-++. .+ .+.+||||.+..-++||..++..|.
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-ti----------kK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-TI----------KKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-ee----------cccEEEEecCccCHHHHHHHHHhhc
Confidence 4789999999998874 3 5789999999999988544322 21 4569999999999999999999998
Q ss_pred CCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHc--------cCCccCCccEEEEcCcchhhcCCCHHHHH
Q 010649 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES--------HNTNLRRVTYLVLDEADRMLDMGFEPQIK 268 (505)
Q Consensus 197 ~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~--------~~~~l~~~~~lVlDEah~~~~~~~~~~~~ 268 (505)
....-.++.++.+... ....++.|+|+|+.++..--.+ +...-..+.++++||+|.+...-|...+.
T Consensus 370 ti~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVls 444 (776)
T KOG1123|consen 370 TIQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLS 444 (776)
T ss_pred ccCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHH
Confidence 7666666666654322 2356789999999765321111 01113457899999999998776666665
Q ss_pred HHHHhcCCCCceEEecCCChHHHHHHHH-HHccCCcEEEEcCCCcccc--------------------------cceeee
Q 010649 269 KILSQIRPDRQTLYWSATWPKEVEHLAR-QYLYNPYKVIIGSPDLKAN--------------------------HAIRQH 321 (505)
Q Consensus 269 ~il~~~~~~~~~v~~SAT~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~ 321 (505)
.+-..+ .+++|||+-.+...+.. .|+..|......-.++... ...+..
T Consensus 445 iv~aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~ 519 (776)
T KOG1123|consen 445 IVQAHC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRM 519 (776)
T ss_pred HHHHHh-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhh
Confidence 555444 38999997543322211 1222221111110000000 011111
Q ss_pred eeccChhHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhc-CCCcEEE
Q 010649 322 VDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA-GKSPIMT 399 (505)
Q Consensus 322 ~~~~~~~~k~~~l~~~l~~~~-~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~-g~~~vLV 399 (505)
+..+-+..|++.+.-+++-+. .+.++|||....-....++-.|.+. .|+|..++.+|..+++.|+. ..++-++
T Consensus 520 lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~Kp-----fIYG~Tsq~ERm~ILqnFq~n~~vNTIF 594 (776)
T KOG1123|consen 520 LLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGKP-----FIYGPTSQNERMKILQNFQTNPKVNTIF 594 (776)
T ss_pred eeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCCc-----eEECCCchhHHHHHHHhcccCCccceEE
Confidence 223334566766666665543 4569999999988888877777664 78999999999999999994 5788888
Q ss_pred EcccccccCCCCCCCEEEEcCCC-CChhHHHHhhcccccCCC------ccEEEEEecCccHHH
Q 010649 400 ATDVAARGLDVKDVKYVINYDFP-GSLEDYVHRIGRTGRAGA------KGTAYTFFTAANARF 455 (505)
Q Consensus 400 aT~~~~~Gidi~~~~~Vi~~~~p-~s~~~~~Qr~GR~~R~g~------~g~~~~~~~~~~~~~ 455 (505)
-+.+....+|+|.++++|....- .|-.+-.||+||..|+.+ ....|.+++.+..++
T Consensus 595 lSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM 657 (776)
T KOG1123|consen 595 LSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEM 657 (776)
T ss_pred EeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHH
Confidence 99999999999999999987654 478899999999999643 235556666654443
No 126
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.88 E-value=3.5e-22 Score=204.66 Aligned_cols=159 Identities=20% Similarity=0.242 Sum_probs=114.5
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcC-C
Q 010649 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA-S 198 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~-~ 198 (505)
+.|..||.+.+..+-.+...+|+|||.+|||++-...+=..+... +...||+++|+++|++|+......... .
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRes------D~~VVIyvaPtKaLVnQvsa~VyaRF~~~ 583 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRES------DSDVVIYVAPTKALVNQVSANVYARFDTK 583 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhc------CCCEEEEecchHHHhhhhhHHHHHhhccC
Confidence 368889999999999999999999999999987555444444332 366799999999999999888775442 2
Q ss_pred CCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHc---cCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcC
Q 010649 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES---HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR 275 (505)
Q Consensus 199 ~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~---~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~ 275 (505)
.-.+.+.+.|......++. .-.|+|+|+-|+.+..++.+ ......++.++|+||+|.+..+.-...++.++..+
T Consensus 584 t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li- 660 (1330)
T KOG0949|consen 584 TFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI- 660 (1330)
T ss_pred ccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc-
Confidence 2223333334332222221 22489999999999888877 34456789999999999998776455555555444
Q ss_pred CCCceEEecCCCh
Q 010649 276 PDRQTLYWSATWP 288 (505)
Q Consensus 276 ~~~~~v~~SAT~~ 288 (505)
.+.++.+|||..
T Consensus 661 -~CP~L~LSATig 672 (1330)
T KOG0949|consen 661 -PCPFLVLSATIG 672 (1330)
T ss_pred -CCCeeEEecccC
Confidence 356899999963
No 127
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.88 E-value=3.4e-21 Score=184.64 Aligned_cols=314 Identities=16% Similarity=0.194 Sum_probs=215.3
Q ss_pred CCCcHHHHHHHHHHhc-CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 010649 120 FEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~-~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~ 198 (505)
..|-|+|.+.+..++. |..+++..++|.|||+.++..+..+..+ .| .|||||. +|-..|.+.+.+|++.
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraE--------wp-lliVcPA-svrftWa~al~r~lps 266 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAE--------WP-LLIVCPA-SVRFTWAKALNRFLPS 266 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhc--------Cc-EEEEecH-HHhHHHHHHHHHhccc
Confidence 3568999999998775 6789999999999999977533333332 22 8999998 6778899999999876
Q ss_pred CCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCC
Q 010649 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 278 (505)
Q Consensus 199 ~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~ 278 (505)
..- +.++.++..... .+.....|.|.+++.+..+-.. ..-..+.+||+||+|.+.+.. ....+.++..+....
T Consensus 267 ~~p-i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~~--l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~ak 339 (689)
T KOG1000|consen 267 IHP-IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHDI--LKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAK 339 (689)
T ss_pred ccc-eEEEecccCCcc---ccccCCeEEEEEHHHHHHHHHH--HhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhh
Confidence 543 445555443321 2233457999999988544221 112347899999999988765 455777777777788
Q ss_pred ceEEecCCCh----H---------------HHHHHHHHHccCCcEE-EEcCCC------------------------c-c
Q 010649 279 QTLYWSATWP----K---------------EVEHLARQYLYNPYKV-IIGSPD------------------------L-K 313 (505)
Q Consensus 279 ~~v~~SAT~~----~---------------~~~~~~~~~~~~~~~~-~~~~~~------------------------~-~ 313 (505)
++|++|+|+. . ...+++..|+.-...- ...... + .
T Consensus 340 hvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~q 419 (689)
T KOG1000|consen 340 HVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQ 419 (689)
T ss_pred heEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999952 1 1222333332211000 000000 0 0
Q ss_pred cccceeeeeeccC-------------------------------------hhHHHHHHHHHHHhh-----cCCCeEEEEe
Q 010649 314 ANHAIRQHVDIVS-------------------------------------ESQKYNKLVKLLEDI-----MDGSRILIFM 351 (505)
Q Consensus 314 ~~~~~~~~~~~~~-------------------------------------~~~k~~~l~~~l~~~-----~~~~~vlVF~ 351 (505)
.+....+.+.... ...|...+.+.|... .+..+.+|||
T Consensus 420 LPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFa 499 (689)
T KOG1000|consen 420 LPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFA 499 (689)
T ss_pred CCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEe
Confidence 0000111111110 112333344444431 1234899999
Q ss_pred CCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcC-CCcE-EEEcccccccCCCCCCCEEEEcCCCCChhHHH
Q 010649 352 DTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG-KSPI-MTATDVAARGLDVKDVKYVINYDFPGSLEDYV 429 (505)
Q Consensus 352 ~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g-~~~v-LVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~ 429 (505)
......+.+...+.+.++....|.|..+..+|....+.|+.. +..| +++..+++.|+++...+.||+..++|++.-++
T Consensus 500 HH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLl 579 (689)
T KOG1000|consen 500 HHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLL 579 (689)
T ss_pred hhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEE
Confidence 999999999999999999999999999999999999999954 4554 44557889999999999999999999999999
Q ss_pred HhhcccccCCCccEEEEEecC
Q 010649 430 HRIGRTGRAGAKGTAYTFFTA 450 (505)
Q Consensus 430 Qr~GR~~R~g~~g~~~~~~~~ 450 (505)
|.-.|++|.||+..+.+++..
T Consensus 580 QAEDRaHRiGQkssV~v~ylv 600 (689)
T KOG1000|consen 580 QAEDRAHRIGQKSSVFVQYLV 600 (689)
T ss_pred echhhhhhccccceeeEEEEE
Confidence 999999999998666555543
No 128
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.87 E-value=1e-20 Score=172.40 Aligned_cols=186 Identities=44% Similarity=0.639 Sum_probs=154.8
Q ss_pred cCCCCCcHHHHHHHHHHhcC-CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010649 117 AGFFEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (505)
Q Consensus 117 ~~~~~~~~~Q~~~i~~~l~~-~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 195 (505)
.++.+|+++|.++++.++.. +.+++.++||+|||.+++.+++..+.... ..++||++|+++++.|+...+..+
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~------~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK------GKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC------CCcEEEEeCCHHHHHHHHHHHHHH
Confidence 45678999999999999998 99999999999999998888887776532 456999999999999999999998
Q ss_pred cCCCCceEEEEECCCCchHHHHHHhcCC-cEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhc
Q 010649 196 GASSKIKSTCIYGGVPKGPQVRDLQKGV-EIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI 274 (505)
Q Consensus 196 ~~~~~i~~~~~~gg~~~~~~~~~~~~~~-~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~ 274 (505)
............++.........+.... +++++|++.+.+.+........+++++|+||+|.+....+...+..++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 157 (201)
T smart00487 78 GPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL 157 (201)
T ss_pred hccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC
Confidence 7665545555666655555666666666 999999999999988866677789999999999999756788888999888
Q ss_pred CCCCceEEecCCChHHHHHHHHHHccCCcEEEEc
Q 010649 275 RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIG 308 (505)
Q Consensus 275 ~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 308 (505)
.+..+++++|||+++........+......+...
T Consensus 158 ~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 158 PKNVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred CccceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 8899999999999999988888888766655443
No 129
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=2.8e-20 Score=194.92 Aligned_cols=315 Identities=19% Similarity=0.233 Sum_probs=212.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010649 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~ 200 (505)
.|++.|.-+ .+.-++.-|+.+.||+|||+++.+|++..... +..|.|++|+..||.|-++++..+....+
T Consensus 82 ~~ydVQliG--g~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~--------G~~VhvvT~ndyLA~RD~e~m~~l~~~lG 151 (913)
T PRK13103 82 RHFDVQLIG--GMTLHEGKIAEMRTGEGKTLVGTLAVYLNALS--------GKGVHVVTVNDYLARRDANWMRPLYEFLG 151 (913)
T ss_pred CcchhHHHh--hhHhccCccccccCCCCChHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 455555544 33334667899999999999999999887776 77799999999999999999999999999
Q ss_pred ceEEEEECCCCchHHHHHHhcCCcEEEeChHHH-HHHHHcc------CCccCCccEEEEcCcchhh-cC-----------
Q 010649 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRML-DM----------- 261 (505)
Q Consensus 201 i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~------~~~l~~~~~lVlDEah~~~-~~----------- 261 (505)
+.+.++.+..+........ .++|+++|..-| .|+|... ......+.++||||+|.++ |.
T Consensus 152 l~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~ 229 (913)
T PRK13103 152 LSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQA 229 (913)
T ss_pred CEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCC
Confidence 9999998877654433333 389999998875 2333321 1224778999999999764 10
Q ss_pred ----CCHHHHHHHHHhcCC--------------------C----------------------------------------
Q 010649 262 ----GFEPQIKKILSQIRP--------------------D---------------------------------------- 277 (505)
Q Consensus 262 ----~~~~~~~~il~~~~~--------------------~---------------------------------------- 277 (505)
.....+..++..+.. .
T Consensus 230 ~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~ 309 (913)
T PRK13103 230 EDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTH 309 (913)
T ss_pred ccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHH
Confidence 011112222221100 0
Q ss_pred ---------------------------------------------------------------------------CceEE
Q 010649 278 ---------------------------------------------------------------------------RQTLY 282 (505)
Q Consensus 278 ---------------------------------------------------------------------------~~~v~ 282 (505)
.++.+
T Consensus 310 i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsG 389 (913)
T PRK13103 310 VYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSG 389 (913)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhcc
Confidence 12223
Q ss_pred ecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHH
Q 010649 283 WSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQIT 361 (505)
Q Consensus 283 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~vlVF~~~~~~~~~l~ 361 (505)
||+|...+..++..-|..+-+.+....+ .... ......+.....|...+++.+.... .+.||||-+.|.+..+.|+
T Consensus 390 MTGTa~te~~Ef~~iY~l~Vv~IPTnkP--~~R~-D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls 466 (913)
T PRK13103 390 MTGTADTEAFEFRQIYGLDVVVIPPNKP--LARK-DFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMS 466 (913)
T ss_pred CCCCCHHHHHHHHHHhCCCEEECCCCCC--cccc-cCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHH
Confidence 3333333333333222222111110100 0000 1111234456778888887777654 4669999999999999999
Q ss_pred HHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcC-CCcEEEEcccccccCCCC-----------------------------
Q 010649 362 RQLRMDGWPALSIHGDKSQAERDWVLSEFKAG-KSPIMTATDVAARGLDVK----------------------------- 411 (505)
Q Consensus 362 ~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g-~~~vLVaT~~~~~Gidi~----------------------------- 411 (505)
+.|.+.+++..+++......+-+.+- +.| .-.|.|||++++||.||.
T Consensus 467 ~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (913)
T PRK13103 467 NLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQK 543 (913)
T ss_pred HHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHh
Confidence 99999999998888875543333333 345 345999999999999994
Q ss_pred ---CC-----CEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccH
Q 010649 412 ---DV-----KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (505)
Q Consensus 412 ---~~-----~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 453 (505)
.| =+||-...+.|..--.|-.||+||.|.+|.+-.|++-.|.
T Consensus 544 ~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 544 RHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 11 2688888899999999999999999999999999988764
No 130
>COG4889 Predicted helicase [General function prediction only]
Probab=99.86 E-value=4.2e-21 Score=194.53 Aligned_cols=358 Identities=18% Similarity=0.223 Sum_probs=213.3
Q ss_pred CCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC----CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCE
Q 010649 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG----RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 174 (505)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~----~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 174 (505)
..|+.+.. .++..++.-+.-.+|+|+|++|+..++++ ...-+++.+|+|||++++- +...+. ..+
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala---------~~~ 208 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALA---------AAR 208 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHh---------hhh
Confidence 45555433 45566666666779999999999998864 2345556699999998664 444433 256
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHH-----------------------H--HHhcCCcEEEeC
Q 010649 175 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV-----------------------R--DLQKGVEIVIAT 229 (505)
Q Consensus 175 vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~-----------------------~--~~~~~~~Iiv~T 229 (505)
+|+|+|+.+|..|...++..- ....++...++.+....... . .-..+--|+++|
T Consensus 209 iL~LvPSIsLLsQTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsT 287 (1518)
T COG4889 209 ILFLVPSISLLSQTLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFST 287 (1518)
T ss_pred eEeecchHHHHHHHHHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEc
Confidence 999999999999988877764 24445555555443322110 1 111234599999
Q ss_pred hHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcC-----CCCceEEecCCChH---HH----------
Q 010649 230 PGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR-----PDRQTLYWSATWPK---EV---------- 291 (505)
Q Consensus 230 ~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~-----~~~~~v~~SAT~~~---~~---------- 291 (505)
++.+...-+....-+..|++||+||||+.........=......+. +..+.+.||||+.- ..
T Consensus 288 YQSl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~ 367 (1518)
T COG4889 288 YQSLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAE 367 (1518)
T ss_pred ccchHHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccce
Confidence 9999877766666788899999999998542110000000000010 22345778888531 11
Q ss_pred --------------------HHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHH------HHh-hc--
Q 010649 292 --------------------EHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL------LED-IM-- 342 (505)
Q Consensus 292 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~------l~~-~~-- 342 (505)
+...+.++.++..+.+..........+.+........-.++..-.+ |.. ..
T Consensus 368 l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~ 447 (1518)
T COG4889 368 LSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGED 447 (1518)
T ss_pred eeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhcccc
Confidence 1112223333333332222211111111111111111111111111 111 00
Q ss_pred -----------CCCeEEEEeCCcccHHHHHHHHHh-------------CCCC--eEEEcCCCCHHHHHHHHH---HHhcC
Q 010649 343 -----------DGSRILIFMDTKKGCDQITRQLRM-------------DGWP--ALSIHGDKSQAERDWVLS---EFKAG 393 (505)
Q Consensus 343 -----------~~~~vlVF~~~~~~~~~l~~~L~~-------------~~~~--~~~lhg~~~~~~r~~~~~---~f~~g 393 (505)
+..+.|-||.++++...+++.+.. .++. +..+.|.|+..+|...+. .|...
T Consensus 448 n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~n 527 (1518)
T COG4889 448 NDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPN 527 (1518)
T ss_pred ccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcc
Confidence 112678999998887777665532 2333 345668898888854443 34556
Q ss_pred CCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCC-ccEEEEEec---------------CccHHHHH
Q 010649 394 KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGA-KGTAYTFFT---------------AANARFAK 457 (505)
Q Consensus 394 ~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~-~g~~~~~~~---------------~~~~~~~~ 457 (505)
+++||--..++++|+|+|.++.||++++-.++.+.+|.+||+.|... +...|+++. ..+.+.+.
T Consensus 528 eckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIalpegi~p~~~l~~n~nFk~VW 607 (1518)
T COG4889 528 ECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIALPEGIKPLDELVNNTNFKNVW 607 (1518)
T ss_pred hheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEeccCCCCCchHHHhcCccHHHHH
Confidence 88899888999999999999999999999999999999999999532 223344332 12345566
Q ss_pred HHHHHHHHhCC
Q 010649 458 ELITILEEAGQ 468 (505)
Q Consensus 458 ~l~~~l~~~~~ 468 (505)
.+++.|+..+.
T Consensus 608 qVlnALRShD~ 618 (1518)
T COG4889 608 QVLKALRSHDE 618 (1518)
T ss_pred HHHHHHHhcCH
Confidence 77777777655
No 131
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=8.9e-19 Score=181.82 Aligned_cols=315 Identities=21% Similarity=0.245 Sum_probs=215.0
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010649 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~ 200 (505)
.|++.|.-+.-.+..| -|+.+.||-|||+++.+|++...+. |..|-||+...-||..=++++..+....+
T Consensus 78 r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~--------GkgVhVVTvNdYLA~RDae~mg~vy~fLG 147 (925)
T PRK12903 78 RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT--------GKGVIVSTVNEYLAERDAEEMGKVFNFLG 147 (925)
T ss_pred CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc--------CCceEEEecchhhhhhhHHHHHHHHHHhC
Confidence 6677777766555444 5899999999999999999877665 66689999999999998999999888889
Q ss_pred ceEEEEECCCCchHHHHHHhcCCcEEEeChHHHH-HHHHcc------CCccCCccEEEEcCcchhh-cC-----------
Q 010649 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-DMLESH------NTNLRRVTYLVLDEADRML-DM----------- 261 (505)
Q Consensus 201 i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~-~~l~~~------~~~l~~~~~lVlDEah~~~-~~----------- 261 (505)
+.|.++..+.+...... .-.|||+.+|...|- ++|... ....+.+.+.||||+|.++ |.
T Consensus 148 LsvG~i~~~~~~~~rr~--aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~ 225 (925)
T PRK12903 148 LSVGINKANMDPNLKRE--AYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQ 225 (925)
T ss_pred CceeeeCCCCChHHHHH--hccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCC
Confidence 99998887765543333 345899999987752 334321 1234678899999999754 10
Q ss_pred ----CCHHHHHHHHHhcCC-------C-----------------------------------------------------
Q 010649 262 ----GFEPQIKKILSQIRP-------D----------------------------------------------------- 277 (505)
Q Consensus 262 ----~~~~~~~~il~~~~~-------~----------------------------------------------------- 277 (505)
.+...+..++..+.. .
T Consensus 226 ~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV 305 (925)
T PRK12903 226 SNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIV 305 (925)
T ss_pred ccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 011122222222211 0
Q ss_pred --------------------------------------------------------CceEEecCCChHHHHHHHHHHccC
Q 010649 278 --------------------------------------------------------RQTLYWSATWPKEVEHLARQYLYN 301 (505)
Q Consensus 278 --------------------------------------------------------~~~v~~SAT~~~~~~~~~~~~~~~ 301 (505)
.++.+||+|...+..++.+-|..+
T Consensus 306 ~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~ 385 (925)
T PRK12903 306 RDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMR 385 (925)
T ss_pred ECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCC
Confidence 123344444444444444333222
Q ss_pred CcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCH
Q 010649 302 PYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQ 380 (505)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~ 380 (505)
.+.+....+. ...-.....+.....|+..+++.+.+. ..+.||||.|.+.+.++.|+..|.+.+++..++++.-..
T Consensus 386 Vv~IPTnkP~---~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e 462 (925)
T PRK12903 386 VNVVPTNKPV---IRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNA 462 (925)
T ss_pred EEECCCCCCe---eeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchh
Confidence 2211111100 000111123445677888888777664 456699999999999999999999999999999986443
Q ss_pred HHHHHHHHHHhcC-CCcEEEEcccccccCCCCCCC--------EEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCc
Q 010649 381 AERDWVLSEFKAG-KSPIMTATDVAARGLDVKDVK--------YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 451 (505)
Q Consensus 381 ~~r~~~~~~f~~g-~~~vLVaT~~~~~Gidi~~~~--------~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 451 (505)
++..+-. +.| .-.|.|||++++||.||.--. +||....+.|..--.|..||+||.|.+|.+-.|++-.
T Consensus 463 --~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLe 539 (925)
T PRK12903 463 --REAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLD 539 (925)
T ss_pred --hHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecc
Confidence 3322222 455 445999999999999996322 8999999999999999999999999999999998877
Q ss_pred cH
Q 010649 452 NA 453 (505)
Q Consensus 452 ~~ 453 (505)
|.
T Consensus 540 D~ 541 (925)
T PRK12903 540 DQ 541 (925)
T ss_pred hH
Confidence 64
No 132
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=1.4e-19 Score=173.33 Aligned_cols=326 Identities=19% Similarity=0.256 Sum_probs=211.6
Q ss_pred CCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010649 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (505)
Q Consensus 98 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vli 177 (505)
+..|...++++...+.+++..-...+..+.+.+..+.+++-++++++||||||...--..+...... ...|.+
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~-------~~~v~C 96 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH-------LTGVAC 96 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh-------ccceee
Confidence 6778899999999999988776677777888888888889999999999999976333333333322 234888
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHh-cCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcc
Q 010649 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256 (505)
Q Consensus 178 l~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah 256 (505)
..|.|.-|.+++.....- .++....-.|..-.. ++.. ...-+-+||.++|++...+.. .+.++++||+||||
T Consensus 97 TQprrvaamsva~RVadE---MDv~lG~EVGysIrf---EdC~~~~T~Lky~tDgmLlrEams~p-~l~~y~viiLDeah 169 (699)
T KOG0925|consen 97 TQPRRVAAMSVAQRVADE---MDVTLGEEVGYSIRF---EDCTSPNTLLKYCTDGMLLREAMSDP-LLGRYGVIILDEAH 169 (699)
T ss_pred cCchHHHHHHHHHHHHHH---hccccchhccccccc---cccCChhHHHHHhcchHHHHHHhhCc-ccccccEEEechhh
Confidence 899998888877665542 112221111111110 0000 011233578888777666544 47899999999999
Q ss_pred h-hhcCCCH-HHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHH
Q 010649 257 R-MLDMGFE-PQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKL 334 (505)
Q Consensus 257 ~-~~~~~~~-~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 334 (505)
. -+..+.. -.++.++ .-+++.++|.||||+. ..++ ..|..++..+.+.. ...+...+....+.+.++..
T Consensus 170 ERtlATDiLmGllk~v~-~~rpdLk~vvmSatl~--a~Kf-q~yf~n~Pll~vpg-----~~PvEi~Yt~e~erDylEaa 240 (699)
T KOG0925|consen 170 ERTLATDILMGLLKEVV-RNRPDLKLVVMSATLD--AEKF-QRYFGNAPLLAVPG-----THPVEIFYTPEPERDYLEAA 240 (699)
T ss_pred hhhHHHHHHHHHHHHHH-hhCCCceEEEeecccc--hHHH-HHHhCCCCeeecCC-----CCceEEEecCCCChhHHHHH
Confidence 3 2222111 1222333 3357999999999973 3334 44555554444332 12233334344444555544
Q ss_pred HHHHHhh---cCCCeEEEEeCCcccHHHHHHHHHhC---------CCCeEEEcCCCCHHHHHHHHHHHh---cC--CCcE
Q 010649 335 VKLLEDI---MDGSRILIFMDTKKGCDQITRQLRMD---------GWPALSIHGDKSQAERDWVLSEFK---AG--KSPI 397 (505)
Q Consensus 335 ~~~l~~~---~~~~~vlVF~~~~~~~~~l~~~L~~~---------~~~~~~lhg~~~~~~r~~~~~~f~---~g--~~~v 397 (505)
+..+-++ ...+-+|||....++.+..++.+... .+.+..+| +.++..+++--. +| ..+|
T Consensus 241 irtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~Rkv 316 (699)
T KOG0925|consen 241 IRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKV 316 (699)
T ss_pred HHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceE
Confidence 4443332 23457999999999988888887642 24577777 333344433222 12 3579
Q ss_pred EEEcccccccCCCCCCCEEEEcCC------------------CCChhHHHHhhcccccCCCccEEEEEecCc
Q 010649 398 MTATDVAARGLDVKDVKYVINYDF------------------PGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 451 (505)
Q Consensus 398 LVaT~~~~~Gidi~~~~~Vi~~~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 451 (505)
+|+|++++..+.++.+.+||.-+. |-|..+-.||.||+||. .+|.|+.++++.
T Consensus 317 Vvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 317 VVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred EEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 999999999999999999996553 55888999999999998 899999999975
No 133
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.5e-19 Score=182.00 Aligned_cols=299 Identities=22% Similarity=0.319 Sum_probs=181.6
Q ss_pred HHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCC--CCCCCCEEEEEcccHHHHHHHHHHHHH-hcC-CCCceEEEEE
Q 010649 132 MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL--APGDGPIVLVLAPTRELAVQIQQESTK-FGA-SSKIKSTCIY 207 (505)
Q Consensus 132 ~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~--~~~~~~~vlil~Pt~~La~Q~~~~~~~-~~~-~~~i~~~~~~ 207 (505)
+|-.+--+|||++||||||+. +| +.+.+..+. ....+..+=|.-|.|.-|..+++.... ++. ...+...+-+
T Consensus 267 aIn~n~vvIIcGeTGsGKTTQ--vP--QFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRf 342 (1172)
T KOG0926|consen 267 AINENPVVIICGETGSGKTTQ--VP--QFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRF 342 (1172)
T ss_pred HhhcCCeEEEecCCCCCcccc--ch--HHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEe
Confidence 344455699999999999986 33 333332221 122244678888998766555544332 222 1112223333
Q ss_pred CCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchh-hcCC----CHHHHHHHHHhcC------C
Q 010649 208 GGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM-LDMG----FEPQIKKILSQIR------P 276 (505)
Q Consensus 208 gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~-~~~~----~~~~~~~il~~~~------~ 276 (505)
.+.- .....|.++|.+.|+..+++ .+.|.+++.||+||||.= ...+ ....+-.+-.... +
T Consensus 343 d~ti--------~e~T~IkFMTDGVLLrEi~~-DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~k 413 (1172)
T KOG0926|consen 343 DGTI--------GEDTSIKFMTDGVLLREIEN-DFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIK 413 (1172)
T ss_pred cccc--------CCCceeEEecchHHHHHHHH-hHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccC
Confidence 3321 23468999999999998887 455899999999999941 1111 1111111111111 2
Q ss_pred CCceEEecCCChHHHHHHH--HHHccC-CcEEEEcCCCcccccceeeeeeccChhHH----HHHHHHHHHhhcCCCeEEE
Q 010649 277 DRQTLYWSATWPKEVEHLA--RQYLYN-PYKVIIGSPDLKANHAIRQHVDIVSESQK----YNKLVKLLEDIMDGSRILI 349 (505)
Q Consensus 277 ~~~~v~~SAT~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~k----~~~l~~~l~~~~~~~~vlV 349 (505)
..++|+||||+. +.++. +.++.. |..+.+.... ..+...+......+. +.....+ .+..+.+.+||
T Consensus 414 pLKLIIMSATLR--VsDFtenk~LFpi~pPlikVdARQ----fPVsIHF~krT~~DYi~eAfrKtc~I-H~kLP~G~ILV 486 (1172)
T KOG0926|consen 414 PLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDARQ----FPVSIHFNKRTPDDYIAEAFRKTCKI-HKKLPPGGILV 486 (1172)
T ss_pred ceeEEEEeeeEE--ecccccCceecCCCCceeeeeccc----CceEEEeccCCCchHHHHHHHHHHHH-hhcCCCCcEEE
Confidence 567899999984 33333 222222 2222222211 112222222222222 2222222 23345678999
Q ss_pred EeCCcccHHHHHHHHHhCCC------------------------------------------------------------
Q 010649 350 FMDTKKGCDQITRQLRMDGW------------------------------------------------------------ 369 (505)
Q Consensus 350 F~~~~~~~~~l~~~L~~~~~------------------------------------------------------------ 369 (505)
|+....+++.|++.|++...
T Consensus 487 FvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~ra 566 (1172)
T KOG0926|consen 487 FVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRA 566 (1172)
T ss_pred EEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhh
Confidence 99999999999999976410
Q ss_pred ---------------------------------------CeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCC
Q 010649 370 ---------------------------------------PALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDV 410 (505)
Q Consensus 370 ---------------------------------------~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi 410 (505)
.|..+++-++.+++..+++.-..|..=++|||+++++.+.|
T Consensus 567 a~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTI 646 (1172)
T KOG0926|consen 567 AFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTI 646 (1172)
T ss_pred hhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhccccc
Confidence 01133555667777777777777887899999999999999
Q ss_pred CCCCEEEEcCCCC------------------ChhHHHHhhcccccCCCccEEEEEecCc
Q 010649 411 KDVKYVINYDFPG------------------SLEDYVHRIGRTGRAGAKGTAYTFFTAA 451 (505)
Q Consensus 411 ~~~~~Vi~~~~p~------------------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 451 (505)
|++.+||..+..+ |.++--||.|||||.| .|+||.+|+..
T Consensus 647 PgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 647 PGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred CCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 9999999766432 5667789999999995 89999999864
No 134
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.83 E-value=7.6e-18 Score=182.22 Aligned_cols=329 Identities=20% Similarity=0.234 Sum_probs=199.8
Q ss_pred CCCcHHHHHHHHHHh----cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHH-HHHHHH
Q 010649 120 FEPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI-QQESTK 194 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l----~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~-~~~~~~ 194 (505)
.++|+-|.+....+. .++.+++.|+||+|||++|++|++... .+++++|++||++|++|+ .+.+..
T Consensus 244 ~e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~---------~~~~vvI~t~T~~Lq~Ql~~~~i~~ 314 (820)
T PRK07246 244 LEERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS---------DQRQIIVSVPTKILQDQIMAEEVKA 314 (820)
T ss_pred CccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc---------CCCcEEEEeCcHHHHHHHHHHHHHH
Confidence 478999999555433 467799999999999999999988753 146799999999999999 466776
Q ss_pred hcCCCCceEEEEECCCCchH-----------------------------------------------HHHHH--------
Q 010649 195 FGASSKIKSTCIYGGVPKGP-----------------------------------------------QVRDL-------- 219 (505)
Q Consensus 195 ~~~~~~i~~~~~~gg~~~~~-----------------------------------------------~~~~~-------- 219 (505)
+....++.+..+.|+...-- .+..+
T Consensus 315 l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~ 394 (820)
T PRK07246 315 IQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQ 394 (820)
T ss_pred HHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCC
Confidence 66656666666665432100 00000
Q ss_pred ----------------hcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCC-----C-------HHH-----
Q 010649 220 ----------------QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-----F-------EPQ----- 266 (505)
Q Consensus 220 ----------------~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~-----~-------~~~----- 266 (505)
...++|+|+....|...+.... .+...+++||||||++.+.. . ...
T Consensus 395 ~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~ 473 (820)
T PRK07246 395 SSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKAL 473 (820)
T ss_pred CCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHH
Confidence 1124799999988777664433 35678999999999865311 0 000
Q ss_pred --------------------------------------HHH-------H--------HHhc-------------------
Q 010649 267 --------------------------------------IKK-------I--------LSQI------------------- 274 (505)
Q Consensus 267 --------------------------------------~~~-------i--------l~~~------------------- 274 (505)
+.. + ...+
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~ 553 (820)
T PRK07246 474 SGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRV 553 (820)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcce
Confidence 000 0 0000
Q ss_pred -----------------CCCCceEEecCCCh--HHHHHHHHHHccCCcEEEEcCCCcccccceeeee--ecc-----Chh
Q 010649 275 -----------------RPDRQTLYWSATWP--KEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHV--DIV-----SES 328 (505)
Q Consensus 275 -----------------~~~~~~v~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~ 328 (505)
+....+|++|||++ +.. .+.+.+..+... ....+. .........+ ... .+.
T Consensus 554 ~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~~~~lGl~~~~-~~~~~~-~~~~~~~~~i~~~~p~~~~~~~~ 630 (820)
T PRK07246 554 TYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRV-SLADLLGFEEYL-FHKIEK-DKKQDQLVVVDQDMPLVTETSDE 630 (820)
T ss_pred eEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-cHHHHcCCCccc-eecCCC-ChHHccEEEeCCCCCCCCCCChH
Confidence 01135678888884 222 233333222111 111110 0000000000 011 122
Q ss_pred HHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccc
Q 010649 329 QKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARG 407 (505)
Q Consensus 329 ~k~~~l~~~l~~~-~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~G 407 (505)
.....+.+.+... ...+++||+++|.+..+.++..|....+++ ...|... .+..++++|++++..||++|+.+.+|
T Consensus 631 ~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEG 707 (820)
T PRK07246 631 VYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEG 707 (820)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCC
Confidence 3333455544332 235689999999999999999997665544 4444222 24568999999888899999999999
Q ss_pred CCCCC--CCEEEEcCCCC------------------------------ChhHHHHhhcccccCCCccEEEEEecCc--cH
Q 010649 408 LDVKD--VKYVINYDFPG------------------------------SLEDYVHRIGRTGRAGAKGTAYTFFTAA--NA 453 (505)
Q Consensus 408 idi~~--~~~Vi~~~~p~------------------------------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~--~~ 453 (505)
||+|. ...||...+|. -...+.|.+||.-|...+--++++++.. ..
T Consensus 708 VD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k 787 (820)
T PRK07246 708 VDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTK 787 (820)
T ss_pred CCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCccccc
Confidence 99974 55566666553 1334679999999987654355555544 44
Q ss_pred HHHHHHHHHHH
Q 010649 454 RFAKELITILE 464 (505)
Q Consensus 454 ~~~~~l~~~l~ 464 (505)
.+-+.+.+.|-
T Consensus 788 ~Yg~~~l~sLP 798 (820)
T PRK07246 788 SYGKQILASLA 798 (820)
T ss_pred HHHHHHHHhCC
Confidence 55666655553
No 135
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.81 E-value=2.3e-18 Score=178.92 Aligned_cols=133 Identities=20% Similarity=0.322 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCC--CcEEEEccc
Q 010649 327 ESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGK--SPIMTATDV 403 (505)
Q Consensus 327 ~~~k~~~l~~~l~~~~-~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~--~~vLVaT~~ 403 (505)
+..|++.|.-+|+.+. .++++|||+...+..+.|..+|..+|+..+.|.|....++|+..+++|+... .+++++|..
T Consensus 1258 DcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrS 1337 (1958)
T KOG0391|consen 1258 DCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRS 1337 (1958)
T ss_pred ccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccC
Confidence 4567888887777764 4569999999999999999999999999999999999999999999999764 457889999
Q ss_pred ccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHH
Q 010649 404 AARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKEL 459 (505)
Q Consensus 404 ~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l 459 (505)
.+.|||+..++.||+||..||+..-.|.-.|+.|.|+...+.+|-...+..+...|
T Consensus 1338 ggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeni 1393 (1958)
T KOG0391|consen 1338 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENI 1393 (1958)
T ss_pred CccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHH
Confidence 99999999999999999999999999999999999998777666555544444333
No 136
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.81 E-value=6.2e-18 Score=176.73 Aligned_cols=274 Identities=20% Similarity=0.187 Sum_probs=178.0
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010649 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~ 200 (505)
.|++.|.-+.- .-.+..|+.+.||.|||+++.+|++...+. |..|.||+++..||.+-++++..+....+
T Consensus 76 r~ydvQlig~l--~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~--------G~~VhVvT~NdyLA~RD~e~m~pvy~~LG 145 (870)
T CHL00122 76 RHFDVQLIGGL--VLNDGKIAEMKTGEGKTLVATLPAYLNALT--------GKGVHIVTVNDYLAKRDQEWMGQIYRFLG 145 (870)
T ss_pred CCCchHhhhhH--hhcCCccccccCCCCchHHHHHHHHHHHhc--------CCceEEEeCCHHHHHHHHHHHHHHHHHcC
Confidence 46666766543 334678999999999999999999766554 66699999999999999999999999999
Q ss_pred ceEEEEECCCCchHHHHHHhcCCcEEEeChHHHH-HHHHcc------CCccCCccEEEEcCcchhh-cCC----------
Q 010649 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-DMLESH------NTNLRRVTYLVLDEADRML-DMG---------- 262 (505)
Q Consensus 201 i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~-~~l~~~------~~~l~~~~~lVlDEah~~~-~~~---------- 262 (505)
+.+.++.++.+...... .-.|+|+.+|...|- ++|... ......+.+.|+||+|.++ |..
T Consensus 146 Lsvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~~ 223 (870)
T CHL00122 146 LTVGLIQEGMSSEERKK--NYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQS 223 (870)
T ss_pred CceeeeCCCCChHHHHH--hcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCCC
Confidence 99999888776544333 345899999986542 233221 1234668899999999754 100
Q ss_pred -----CHHHHHHHHHhcCCC------------------------------------------------------------
Q 010649 263 -----FEPQIKKILSQIRPD------------------------------------------------------------ 277 (505)
Q Consensus 263 -----~~~~~~~il~~~~~~------------------------------------------------------------ 277 (505)
....+..++..+..+
T Consensus 224 ~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV 303 (870)
T CHL00122 224 KTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIV 303 (870)
T ss_pred ccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 011111111111100
Q ss_pred --------------------------------------------------------CceEEecCCChHHHHHHHHHHccC
Q 010649 278 --------------------------------------------------------RQTLYWSATWPKEVEHLARQYLYN 301 (505)
Q Consensus 278 --------------------------------------------------------~~~v~~SAT~~~~~~~~~~~~~~~ 301 (505)
..+.+||+|...+..++.+.|..+
T Consensus 304 ~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~ 383 (870)
T CHL00122 304 RNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLE 383 (870)
T ss_pred ECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCCC
Confidence 244566666655444444444333
Q ss_pred CcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHh-hcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCH
Q 010649 302 PYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQ 380 (505)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~ 380 (505)
.+.+....+ .... -...........|...+++.+.+ +..+.||||-|.|.+..+.++..|.+.+++..++++.-..
T Consensus 384 vv~IPtnkp--~~R~-d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~ 460 (870)
T CHL00122 384 VVCIPTHRP--MLRK-DLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPEN 460 (870)
T ss_pred EEECCCCCC--ccce-eCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCcc
Confidence 222111111 0111 11122344556677777666554 4556799999999999999999999999999999996322
Q ss_pred -HHHHHHHHHHhcC-CCcEEEEcccccccCCCC
Q 010649 381 -AERDWVLSEFKAG-KSPIMTATDVAARGLDVK 411 (505)
Q Consensus 381 -~~r~~~~~~f~~g-~~~vLVaT~~~~~Gidi~ 411 (505)
+.-..++.. .| .-.|.|||++++||.||.
T Consensus 461 ~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 461 VRRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred chhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 222233332 34 345999999999999974
No 137
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.80 E-value=2.3e-18 Score=171.35 Aligned_cols=149 Identities=21% Similarity=0.308 Sum_probs=119.0
Q ss_pred ChhHHHHHHHHHHHhhcC-CCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCc-EEEEccc
Q 010649 326 SESQKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSP-IMTATDV 403 (505)
Q Consensus 326 ~~~~k~~~l~~~l~~~~~-~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~-vLVaT~~ 403 (505)
.++.|+..|..+|..+.. ++++|+|.+.-+..+.+.++|...++....+.|+....+|..++.+|....+- +|++|.+
T Consensus 1025 tdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRA 1104 (1185)
T KOG0388|consen 1025 TDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRA 1104 (1185)
T ss_pred ccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEeccc
Confidence 356778888888877644 56999999999999999999999999999999999999999999999986554 6779999
Q ss_pred ccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHHhCCCCCHHHHHhhc
Q 010649 404 AARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAMGR 479 (505)
Q Consensus 404 ~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~i~~~l~~~~~ 479 (505)
.+-|||+..++.||+||..|++..-.|.+.||+|-|+...+.++-........+.+.+. ++|. .++++|.-
T Consensus 1105 GGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~r---A~qK--~~vQq~Vm 1175 (1185)
T KOG0388|consen 1105 GGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLER---ANQK--DEVQQMVM 1175 (1185)
T ss_pred CcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHH---hhhH--HHHHHHHH
Confidence 99999999999999999999999999999999999998654444333333333333333 3332 44555554
No 138
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.80 E-value=1.2e-18 Score=147.62 Aligned_cols=119 Identities=45% Similarity=0.756 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccc
Q 010649 329 QKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARG 407 (505)
Q Consensus 329 ~k~~~l~~~l~~~~-~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~G 407 (505)
.|...+.+++.... ...++||||++...++.+++.|.+.+.++..+|++++..+|..+++.|+++...||++|+++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 68888888888764 45699999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEE
Q 010649 408 LDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTF 447 (505)
Q Consensus 408 idi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 447 (505)
+|+|.+++||++++|++..++.|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998887764
No 139
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.79 E-value=1.1e-18 Score=180.28 Aligned_cols=320 Identities=21% Similarity=0.310 Sum_probs=215.6
Q ss_pred CCcHHHHHHHHHHhc----CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 121 EPTPIQAQGWPMALK----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
++.+||...+.++.+ +-+.|+..+||.|||.. .+.++.++.+.. ...+| .||++|+..|.+ |..++.+|.
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K---~~~GP-~LvivPlstL~N-W~~Ef~kWa 467 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHK---QMQGP-FLIIVPLSTLVN-WSSEFPKWA 467 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHc---ccCCC-eEEeccccccCC-chhhccccc
Confidence 789999999998764 34689999999999987 455666666542 22355 899999988876 888888887
Q ss_pred CCCCceEEEEECCCCchHHH--HHHhcCCcEEEeChHHHHHHHHccCCcc--CCccEEEEcCcchhhcCCCHHHHHHHHH
Q 010649 197 ASSKIKSTCIYGGVPKGPQV--RDLQKGVEIVIATPGRLIDMLESHNTNL--RRVTYLVLDEADRMLDMGFEPQIKKILS 272 (505)
Q Consensus 197 ~~~~i~~~~~~gg~~~~~~~--~~~~~~~~Iiv~T~~~l~~~l~~~~~~l--~~~~~lVlDEah~~~~~~~~~~~~~il~ 272 (505)
+. +..+...|....+... .......+|+++|++.++. ++..| -++.++||||.|+|.+. ...+...+.
T Consensus 468 PS--v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik----dk~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~L~ 539 (1157)
T KOG0386|consen 468 PS--VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK----DKALLSKISWKYMIIDEGHRMKNA--ICKLTDTLN 539 (1157)
T ss_pred cc--eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC----CHHHHhccCCcceeecccccccch--hhHHHHHhh
Confidence 55 4444444432222111 1223458999999988765 22222 24568999999998754 233333333
Q ss_pred hcCCCCceEEecCCC-----------------------------------------------------------------
Q 010649 273 QIRPDRQTLYWSATW----------------------------------------------------------------- 287 (505)
Q Consensus 273 ~~~~~~~~v~~SAT~----------------------------------------------------------------- 287 (505)
.--.....+++|+|+
T Consensus 540 t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLR 619 (1157)
T KOG0386|consen 540 THYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLR 619 (1157)
T ss_pred ccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHH
Confidence 222333345555551
Q ss_pred ----------hHHHHHHHHHH------------------------------------------ccCCcEEEEcCCCcccc
Q 010649 288 ----------PKEVEHLARQY------------------------------------------LYNPYKVIIGSPDLKAN 315 (505)
Q Consensus 288 ----------~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~~~ 315 (505)
|..++.+.+.- +..|+.+. ...
T Consensus 620 RlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~------~ve 693 (1157)
T KOG0386|consen 620 RLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFA------NVE 693 (1157)
T ss_pred hhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhh------hhc
Confidence 11111111110 00000000 000
Q ss_pred cceeee---eeccChhHHHHHHHHHHHhhcC-CCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHh
Q 010649 316 HAIRQH---VDIVSESQKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFK 391 (505)
Q Consensus 316 ~~~~~~---~~~~~~~~k~~~l~~~l~~~~~-~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~ 391 (505)
..+... ..++....|+..|..+|-.+.. +++||.||....-.+.+..+|.-.++....+.|....++|...++.|.
T Consensus 694 ~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN 773 (1157)
T KOG0386|consen 694 NSYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFN 773 (1157)
T ss_pred cccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhc
Confidence 000000 1223345677777777666543 569999999999999999999999999999999999999999999999
Q ss_pred cCCCc---EEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHH
Q 010649 392 AGKSP---IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELI 460 (505)
Q Consensus 392 ~g~~~---vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 460 (505)
.-..+ +|.+|.+.+.|+|+..++.||.||..|++....|+-.|+.|.|+...+-++....-..+.+.+.
T Consensus 774 ~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il 845 (1157)
T KOG0386|consen 774 APDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKIL 845 (1157)
T ss_pred CCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHH
Confidence 65443 7889999999999999999999999999999999999999999988777776665444444433
No 140
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.79 E-value=1.2e-17 Score=160.25 Aligned_cols=137 Identities=19% Similarity=0.224 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHHhhcC---CCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcC-CCc-EEEEcc
Q 010649 328 SQKYNKLVKLLEDIMD---GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG-KSP-IMTATD 402 (505)
Q Consensus 328 ~~k~~~l~~~l~~~~~---~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g-~~~-vLVaT~ 402 (505)
+.|++.|.+-|.-..+ ..+.|||.+.-...+.+.-.|.+.|+.++-+.|+|++..|+..++.|++. .+. +||+-.
T Consensus 619 STKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLk 698 (791)
T KOG1002|consen 619 STKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLK 698 (791)
T ss_pred hhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEec
Confidence 4566666665543332 23889999999999999999999999999999999999999999999976 444 466668
Q ss_pred cccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcc--EEEEEecCccHHHHHHHHHHHHHh
Q 010649 403 VAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKG--TAYTFFTAANARFAKELITILEEA 466 (505)
Q Consensus 403 ~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g--~~~~~~~~~~~~~~~~l~~~l~~~ 466 (505)
+.+.-+|+..+.+|+..|+.|+++--.|...|.+|.|+.. .++.|+.++ .+...|+++-+++
T Consensus 699 AGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn--siE~kIieLQeKK 762 (791)
T KOG1002|consen 699 AGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN--SIEEKIIELQEKK 762 (791)
T ss_pred cCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhc--cHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999863 555565554 3445555554444
No 141
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.78 E-value=5.2e-16 Score=160.80 Aligned_cols=119 Identities=16% Similarity=0.140 Sum_probs=84.4
Q ss_pred CCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcC----CCcEEEEcccccccCCC--------
Q 010649 343 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG----KSPIMTATDVAARGLDV-------- 410 (505)
Q Consensus 343 ~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g----~~~vLVaT~~~~~Gidi-------- 410 (505)
..+++||.+.+.+.++.++..|...--..+.+.|+.+ .+...+++|+.. .-.||++|+.+.+|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 3568999999999999999999764223345556543 356688889874 68899999999999999
Q ss_pred CC--CCEEEEcCCCCC-------------------------hhHHHHhhcccccCCCc--cEEEEEec-CccHHHHHHHH
Q 010649 411 KD--VKYVINYDFPGS-------------------------LEDYVHRIGRTGRAGAK--GTAYTFFT-AANARFAKELI 460 (505)
Q Consensus 411 ~~--~~~Vi~~~~p~s-------------------------~~~~~Qr~GR~~R~g~~--g~~~~~~~-~~~~~~~~~l~ 460 (505)
|+ +++||+..+|.. .-.+.|-+||.-|...+ --.+++++ .-...+.+.+.
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R~~~~yg~~~~ 626 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGRIHWPYMESWQ 626 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCCCCchhHHHHH
Confidence 33 888998877741 23466999999998765 33444444 33445555555
Q ss_pred HHH
Q 010649 461 TIL 463 (505)
Q Consensus 461 ~~l 463 (505)
+..
T Consensus 627 ~~~ 629 (636)
T TIGR03117 627 ESV 629 (636)
T ss_pred HHH
Confidence 444
No 142
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.78 E-value=3.2e-16 Score=172.74 Aligned_cols=134 Identities=13% Similarity=0.203 Sum_probs=94.3
Q ss_pred HHHHHHHHHhhc--CCCeEEEEeCCcccHHHHHHHHHhCCC--CeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Q 010649 331 YNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMDGW--PALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAAR 406 (505)
Q Consensus 331 ~~~l~~~l~~~~--~~~~vlVF~~~~~~~~~l~~~L~~~~~--~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~ 406 (505)
...+.+.|.... ..+++|||++|.+..+.++..|..... ....+.-+++...|..+++.|+.++-.||++|..+.+
T Consensus 737 ~~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwE 816 (928)
T PRK08074 737 IEEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWE 816 (928)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccC
Confidence 345555554432 346899999999999999999975422 1222222333345788999999988889999999999
Q ss_pred cCCCCC--CCEEEEcCCCC------------------------------ChhHHHHhhcccccCCCccEEEEEecCc--c
Q 010649 407 GLDVKD--VKYVINYDFPG------------------------------SLEDYVHRIGRTGRAGAKGTAYTFFTAA--N 452 (505)
Q Consensus 407 Gidi~~--~~~Vi~~~~p~------------------------------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~--~ 452 (505)
|||+|+ +.+||...+|. -...+.|.+||.-|..++--++++++.. .
T Consensus 817 GVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~ 896 (928)
T PRK08074 817 GIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTT 896 (928)
T ss_pred ccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCcccc
Confidence 999997 57888877664 1233569999999987664456666554 5
Q ss_pred HHHHHHHHHHHH
Q 010649 453 ARFAKELITILE 464 (505)
Q Consensus 453 ~~~~~~l~~~l~ 464 (505)
..+-+.+.+.|-
T Consensus 897 k~Yg~~~l~sLP 908 (928)
T PRK08074 897 TSYGKYFLESLP 908 (928)
T ss_pred chHHHHHHHhCC
Confidence 556666666653
No 143
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.78 E-value=9.8e-18 Score=163.36 Aligned_cols=326 Identities=14% Similarity=0.085 Sum_probs=226.8
Q ss_pred HHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 010649 115 SKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (505)
Q Consensus 115 ~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~ 194 (505)
+++--.....+|.+++..+-+|++.++.-.|.+||.+++.+.+...+...+ ....+++.|+.+++......+.-
T Consensus 280 ~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~------~s~~~~~~~~~~~~~~~~~~~~V 353 (1034)
T KOG4150|consen 280 NKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH------ATNSLLPSEMVEHLRNGSKGQVV 353 (1034)
T ss_pred hcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc------ccceecchhHHHHhhccCCceEE
Confidence 334445678899999999999999999999999999999887776655432 44589999999998654433322
Q ss_pred hc---CCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCC----ccCCccEEEEcCcchhhcCC---CH
Q 010649 195 FG---ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT----NLRRVTYLVLDEADRMLDMG---FE 264 (505)
Q Consensus 195 ~~---~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~----~l~~~~~lVlDEah~~~~~~---~~ 264 (505)
.. +...-.++..+.+.+......-.+.+..++++.|..+......+.. .+-...++++||+|..+-.. ..
T Consensus 354 ~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~ 433 (1034)
T KOG4150|consen 354 HVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQ 433 (1034)
T ss_pred EEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHH
Confidence 11 1111233445555555555666678899999999887665443332 23455789999999765321 23
Q ss_pred HHHHHHHHhc-----CCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeecc---------ChhHH
Q 010649 265 PQIKKILSQI-----RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIV---------SESQK 330 (505)
Q Consensus 265 ~~~~~il~~~-----~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~k 330 (505)
.+++.++..+ ..+.|++-.+||+...++-....+..+...++........ -+..+... ..+.+
T Consensus 434 ~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~---~K~~V~WNP~~~P~~~~~~~~~ 510 (1034)
T KOG4150|consen 434 DQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSS---EKLFVLWNPSAPPTSKSEKSSK 510 (1034)
T ss_pred HHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCc---cceEEEeCCCCCCcchhhhhhH
Confidence 3444444433 3578999999999877766655555555544432222111 11112111 12333
Q ss_pred HHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhC----CC----CeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc
Q 010649 331 YNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMD----GW----PALSIHGDKSQAERDWVLSEFKAGKSPIMTAT 401 (505)
Q Consensus 331 ~~~l~~~l~~~-~~~~~vlVF~~~~~~~~~l~~~L~~~----~~----~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT 401 (505)
+.....++.+. ..+-++|-||.+++-|+.+....++. +. .+..+.|+...++|.++..+.-.|+..-+|||
T Consensus 511 i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaT 590 (1034)
T KOG4150|consen 511 VVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIAT 590 (1034)
T ss_pred HHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEec
Confidence 44444444443 33459999999999998886665442 11 24467899999999999999999999999999
Q ss_pred ccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEec
Q 010649 402 DVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT 449 (505)
Q Consensus 402 ~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 449 (505)
++++-||||-.++.|++.+.|.|++.+.|..|||||..++..++.+..
T Consensus 591 NALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~ 638 (1034)
T KOG4150|consen 591 NALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAF 638 (1034)
T ss_pred chhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEe
Confidence 999999999999999999999999999999999999988877666544
No 144
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.76 E-value=1.5e-17 Score=162.10 Aligned_cols=265 Identities=18% Similarity=0.205 Sum_probs=181.9
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHH
Q 010649 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 218 (505)
Q Consensus 139 ~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~ 218 (505)
++-++||.||||.- +++++.. .+..++.-|.|-||.++++.+.+.+ +.+..++|.......-.
T Consensus 194 i~H~GPTNSGKTy~----ALqrl~~--------aksGvycGPLrLLA~EV~~r~na~g----ipCdL~TGeE~~~~~~~- 256 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYR----ALQRLKS--------AKSGVYCGPLRLLAHEVYDRLNALG----IPCDLLTGEERRFVLDN- 256 (700)
T ss_pred EEEeCCCCCchhHH----HHHHHhh--------hccceecchHHHHHHHHHHHhhhcC----CCccccccceeeecCCC-
Confidence 66679999999987 5667665 4558999999999999999998876 55555555432211110
Q ss_pred HhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhc-CCCCceEEecCCChHHHHHHHHH
Q 010649 219 LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTLYWSATWPKEVEHLARQ 297 (505)
Q Consensus 219 ~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~-~~~~~~v~~SAT~~~~~~~~~~~ 297 (505)
...+..+-||.|+. .. -..+++.|+||++.|.|...+-.+.+.+--+ ....++.+ .+.+..+.+.
T Consensus 257 -~~~a~hvScTVEM~-------sv-~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-----epsvldlV~~ 322 (700)
T KOG0953|consen 257 -GNPAQHVSCTVEMV-------SV-NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-----EPSVLDLVRK 322 (700)
T ss_pred -CCcccceEEEEEEe-------ec-CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC-----CchHHHHHHH
Confidence 12367778887664 11 2467899999999999977665555544333 23333222 1234444444
Q ss_pred HccC---CcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCC-eEE
Q 010649 298 YLYN---PYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWP-ALS 373 (505)
Q Consensus 298 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~-~~~ 373 (505)
.+.. ...+. .+.....-.-.+.+..-+..+.++.-++ |-+++..-.+...+.+.+.. +.+
T Consensus 323 i~k~TGd~vev~--------------~YeRl~pL~v~~~~~~sl~nlk~GDCvV--~FSkk~I~~~k~kIE~~g~~k~aV 386 (700)
T KOG0953|consen 323 ILKMTGDDVEVR--------------EYERLSPLVVEETALGSLSNLKPGDCVV--AFSKKDIFTVKKKIEKAGNHKCAV 386 (700)
T ss_pred HHhhcCCeeEEE--------------eecccCcceehhhhhhhhccCCCCCeEE--EeehhhHHHHHHHHHHhcCcceEE
Confidence 4322 11111 1111111111224455556666655444 45888999999999888665 999
Q ss_pred EcCCCCHHHHHHHHHHHhc--CCCcEEEEcccccccCCCCCCCEEEEcCCC---------CChhHHHHhhcccccCCC--
Q 010649 374 IHGDKSQAERDWVLSEFKA--GKSPIMTATDVAARGLDVKDVKYVINYDFP---------GSLEDYVHRIGRTGRAGA-- 440 (505)
Q Consensus 374 lhg~~~~~~r~~~~~~f~~--g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p---------~s~~~~~Qr~GR~~R~g~-- 440 (505)
|+|+++++.|.+--..|++ ++++||||||+++.|+|+ +++-||++++. -...+..|..|||||.|.
T Consensus 387 IYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~ 465 (700)
T KOG0953|consen 387 IYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKY 465 (700)
T ss_pred EecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCC
Confidence 9999999999999999997 899999999999999999 79999988864 367889999999999874
Q ss_pred -ccEEEEEecCc
Q 010649 441 -KGTAYTFFTAA 451 (505)
Q Consensus 441 -~g~~~~~~~~~ 451 (505)
.|.+.++..++
T Consensus 466 ~~G~vTtl~~eD 477 (700)
T KOG0953|consen 466 PQGEVTTLHSED 477 (700)
T ss_pred cCceEEEeeHhh
Confidence 37766666543
No 145
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.76 E-value=2.8e-17 Score=164.04 Aligned_cols=120 Identities=19% Similarity=0.267 Sum_probs=99.0
Q ss_pred hhHHHHHHHHHHHhhc--CCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhc--CCCcEEE-Ec
Q 010649 327 ESQKYNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA--GKSPIMT-AT 401 (505)
Q Consensus 327 ~~~k~~~l~~~l~~~~--~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~--g~~~vLV-aT 401 (505)
.+-|+..++..+++.. ...+++|...-......+...|.+.++....+||.....+|..+++.|.. |..+|++ +-
T Consensus 727 ~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSL 806 (901)
T KOG4439|consen 727 PSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSL 806 (901)
T ss_pred chhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEE
Confidence 4567777777777652 23467776666666777788899999999999999999999999999984 4455555 55
Q ss_pred ccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEE
Q 010649 402 DVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYT 446 (505)
Q Consensus 402 ~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~ 446 (505)
.+.+.|+|+-..+|+|.+|+-||++--.|...|..|+|++..+++
T Consensus 807 tAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 807 TAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred ccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEE
Confidence 888999999999999999999999999999999999999876655
No 146
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=3.3e-16 Score=163.57 Aligned_cols=274 Identities=18% Similarity=0.213 Sum_probs=176.6
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010649 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~ 200 (505)
.|++.|.-+- +.-++.-|+.+.||-|||+++.+|++...+. |..|-||+++..||..=++++..+....+
T Consensus 85 r~ydVQliGg--l~Lh~G~IAEM~TGEGKTL~atlpaylnAL~--------GkgVhVVTvNdYLA~RDae~m~~vy~~LG 154 (939)
T PRK12902 85 RHFDVQLIGG--MVLHEGQIAEMKTGEGKTLVATLPSYLNALT--------GKGVHVVTVNDYLARRDAEWMGQVHRFLG 154 (939)
T ss_pred CcchhHHHhh--hhhcCCceeeecCCCChhHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHhHHHHHHHHHHHhC
Confidence 4555555444 4435667999999999999999999887766 66799999999999999999999998999
Q ss_pred ceEEEEECCCCchHHHHHHhcCCcEEEeChHHH-----HHHHHc--cCCccCCccEEEEcCcchhh-cCC----------
Q 010649 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-----IDMLES--HNTNLRRVTYLVLDEADRML-DMG---------- 262 (505)
Q Consensus 201 i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l-----~~~l~~--~~~~l~~~~~lVlDEah~~~-~~~---------- 262 (505)
+.|.++.++.+.. .+...-.|||+++|+..| .+.+.. .....+.+.+.||||+|.++ |..
T Consensus 155 Ltvg~i~~~~~~~--err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg~~ 232 (939)
T PRK12902 155 LSVGLIQQDMSPE--ERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQV 232 (939)
T ss_pred CeEEEECCCCChH--HHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccccCCC
Confidence 9999988766543 333455799999999876 443332 22345778999999999754 110
Q ss_pred -----CHHHHHHHHHhcCC--------------C----------------------------------------------
Q 010649 263 -----FEPQIKKILSQIRP--------------D---------------------------------------------- 277 (505)
Q Consensus 263 -----~~~~~~~il~~~~~--------------~---------------------------------------------- 277 (505)
.......+...+.+ .
T Consensus 233 ~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~~ 312 (939)
T PRK12902 233 ERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFIK 312 (939)
T ss_pred ccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHhc
Confidence 11111112211111 1
Q ss_pred --------------------------------------------------------------CceEEecCCChHHHHHHH
Q 010649 278 --------------------------------------------------------------RQTLYWSATWPKEVEHLA 295 (505)
Q Consensus 278 --------------------------------------------------------------~~~v~~SAT~~~~~~~~~ 295 (505)
.++.+||+|...+..++.
T Consensus 313 d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~ 392 (939)
T PRK12902 313 DVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFE 392 (939)
T ss_pred CCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHH
Confidence 123344444433333333
Q ss_pred HHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEE
Q 010649 296 RQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSI 374 (505)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~l 374 (505)
+-|..+-..+....+ ... .............|...+++.+.+. ..+.||||-|.|.+..+.++..|.+.+++..++
T Consensus 393 ~iY~l~Vv~IPTnkP--~~R-~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vL 469 (939)
T PRK12902 393 KTYKLEVTVIPTNRP--RRR-QDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLL 469 (939)
T ss_pred HHhCCcEEEcCCCCC--eee-ecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchhee
Confidence 333222111111110 000 0111122345567888887766654 456799999999999999999999999999999
Q ss_pred cCCC-CHHHHHHHHHHHhcCC-CcEEEEcccccccCCCC
Q 010649 375 HGDK-SQAERDWVLSEFKAGK-SPIMTATDVAARGLDVK 411 (505)
Q Consensus 375 hg~~-~~~~r~~~~~~f~~g~-~~vLVaT~~~~~Gidi~ 411 (505)
++.- ..+.-..++.. .|+ -.|-|||++++||.||.
T Consensus 470 NAk~~~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 470 NAKPENVEREAEIVAQ--AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred eCCCcchHhHHHHHHh--cCCCCcEEEeccCCCCCcCEe
Confidence 9973 32222233332 443 44999999999999974
No 147
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.76 E-value=3.1e-18 Score=130.98 Aligned_cols=78 Identities=44% Similarity=0.705 Sum_probs=75.5
Q ss_pred HHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCC
Q 010649 362 RQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAG 439 (505)
Q Consensus 362 ~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g 439 (505)
++|+..++++..+||++++.+|..+++.|++++..|||||+++++|+|+|++++||++++|+|+.+|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 368889999999999999999999999999999999999999999999999999999999999999999999999986
No 148
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.75 E-value=6e-17 Score=138.82 Aligned_cols=144 Identities=44% Similarity=0.577 Sum_probs=112.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHH
Q 010649 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 216 (505)
+++++.+|||+|||.+++..+....... ..++++|++|++.++.|+.+.+..+... .+.+..+.+........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL------KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHH
Confidence 4689999999999999887766655441 2567999999999999999999988765 67777777776665555
Q ss_pred HHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCCC
Q 010649 217 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW 287 (505)
Q Consensus 217 ~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~ 287 (505)
.......+|+++|++.+...+.........++++|+||+|.+....+...............+++++|||+
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 55567789999999999888776555566789999999999987765544333444456788999999995
No 149
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.73 E-value=6.5e-17 Score=145.60 Aligned_cols=152 Identities=20% Similarity=0.158 Sum_probs=103.2
Q ss_pred CCcHHHHHHHHHHhc-------CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 010649 121 EPTPIQAQGWPMALK-------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 193 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~-------~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~ 193 (505)
+|+++|.+++..+.. .+++++.+|||+|||.+++..+... .. +++|++|+..|+.|+.+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l-~~----------~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILEL-AR----------KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHH-HC----------EEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcc-cc----------ceeEecCHHHHHHHHHHHHH
Confidence 689999999998873 5789999999999999977544433 32 59999999999999999997
Q ss_pred HhcCCCCceEEE-----------EECCCCchHHHHHHhcCCcEEEeChHHHHHHHHcc-----------CCccCCccEEE
Q 010649 194 KFGASSKIKSTC-----------IYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-----------NTNLRRVTYLV 251 (505)
Q Consensus 194 ~~~~~~~i~~~~-----------~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~-----------~~~l~~~~~lV 251 (505)
.+.......... ..................+++++|+++|....... ......+++||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI 151 (184)
T PF04851_consen 72 DFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVI 151 (184)
T ss_dssp HHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEE
T ss_pred HhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEE
Confidence 765442211111 01111111222233456789999999998776431 12345678999
Q ss_pred EcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCCCh
Q 010649 252 LDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWP 288 (505)
Q Consensus 252 lDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~ 288 (505)
+||||++.... .+..++. .+...+|+||||++
T Consensus 152 ~DEaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 152 IDEAHHYPSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EETGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred EehhhhcCCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 99999987432 1555555 56778999999985
No 150
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.69 E-value=1.6e-15 Score=159.97 Aligned_cols=314 Identities=17% Similarity=0.197 Sum_probs=207.5
Q ss_pred CCcHHHHHHHHHHhc-CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHH-HhcCC
Q 010649 121 EPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST-KFGAS 198 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~-~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~-~~~~~ 198 (505)
...|+|.++++.+.+ ++++++.+|+|||||.++-++++. +....++++++|..+.+..++..+. +|...
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~ 1213 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL 1213 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---------CccceEEEEecchHHHHHHHHHHHHHhhccc
Confidence 348999999998876 456999999999999998886664 2235679999999999977766655 57777
Q ss_pred CCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHH------HHHHHHH
Q 010649 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEP------QIKKILS 272 (505)
Q Consensus 199 ~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~------~~~~il~ 272 (505)
.+..++.+.|..+.+... ....+|+|+||+++-. +. +.+.+++.|.||+|.+.+.. ++ .++.+-.
T Consensus 1214 ~G~~~~~l~ge~s~~lkl---~~~~~vii~tpe~~d~-lq----~iQ~v~l~i~d~lh~igg~~-g~v~evi~S~r~ia~ 1284 (1674)
T KOG0951|consen 1214 LGLRIVKLTGETSLDLKL---LQKGQVIISTPEQWDL-LQ----SIQQVDLFIVDELHLIGGVY-GAVYEVICSMRYIAS 1284 (1674)
T ss_pred cCceEEecCCccccchHH---hhhcceEEechhHHHH-Hh----hhhhcceEeeehhhhhcccC-CceEEEEeeHHHHHH
Confidence 788888888876654332 2346999999999844 43 67789999999999887432 11 2566667
Q ss_pred hcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCC-cccccceeeeeeccChhHHHHH----HHHHH-HhhcCCCe
Q 010649 273 QIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPD-LKANHAIRQHVDIVSESQKYNK----LVKLL-EDIMDGSR 346 (505)
Q Consensus 273 ~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~----l~~~l-~~~~~~~~ 346 (505)
.+.+..+++.+|..+.+ ..+++ .+...-.+.+.... ..+.....|.+........... ....+ +.....++
T Consensus 1285 q~~k~ir~v~ls~~lan-a~d~i--g~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~ 1361 (1674)
T KOG0951|consen 1285 QLEKKIRVVALSSSLAN-ARDLI--GASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKP 1361 (1674)
T ss_pred HHHhheeEEEeehhhcc-chhhc--cccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCC
Confidence 77788889999987654 23331 11111111111111 0111112233333322222221 12222 23345679
Q ss_pred EEEEeCCcccHHHHHHHHHh----------------------CCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 010649 347 ILIFMDTKKGCDQITRQLRM----------------------DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVA 404 (505)
Q Consensus 347 vlVF~~~~~~~~~l~~~L~~----------------------~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~ 404 (505)
.+||++++++|..++..|-. ...+..+-|.+++..+...+-..|..|.+.|+|...-
T Consensus 1362 ~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~- 1440 (1674)
T KOG0951|consen 1362 AIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD- 1440 (1674)
T ss_pred eEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-
Confidence 99999999999776654411 1122223388899999999999999999999998865
Q ss_pred cccCCCCCCCEEE----EcCC------CCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHH
Q 010649 405 ARGLDVKDVKYVI----NYDF------PGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKEL 459 (505)
Q Consensus 405 ~~Gidi~~~~~Vi----~~~~------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l 459 (505)
..|+-....-+|+ .||. +-+.....|++|+|.|+ |.|+++.....+.+.+++
T Consensus 1441 ~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~---~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1441 CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA---GKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcCC---ccEEEEecCchHHHHHHh
Confidence 6777764433333 2332 33489999999999984 678888888777665543
No 151
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.66 E-value=1.5e-14 Score=153.46 Aligned_cols=320 Identities=20% Similarity=0.218 Sum_probs=183.3
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHhc----C--C--cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHH
Q 010649 112 QEISKAGFFEPTPIQAQGWPMALK----G--R--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 183 (505)
Q Consensus 112 ~~l~~~~~~~~~~~Q~~~i~~~l~----~--~--~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~ 183 (505)
+.+.+..-..-+.||-.|+..+.+ . . =++-.|.||+|||++=. -|+..+.. ...+.++.|..-.|.
T Consensus 399 k~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNA-RImyaLsd-----~~~g~RfsiALGLRT 472 (1110)
T TIGR02562 399 KYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANA-RAMYALRD-----DKQGARFAIALGLRS 472 (1110)
T ss_pred hhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHH-HHHHHhCC-----CCCCceEEEEccccc
Confidence 334333333557799999998764 1 1 25666999999998733 24444333 234678888888888
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEECCCCchHHHH-------------------------------------------HHh
Q 010649 184 LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR-------------------------------------------DLQ 220 (505)
Q Consensus 184 La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~-------------------------------------------~~~ 220 (505)
|-.|.-+.+++-..-..-...+++|+....+... .+.
T Consensus 473 LTLQTGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~ 552 (1110)
T TIGR02562 473 LTLQTGHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLS 552 (1110)
T ss_pred eeccchHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhc
Confidence 8888877777755444444555555432211110 000
Q ss_pred c--------CCcEEEeChHHHHHHHHcc---CCccC--C--ccEEEEcCcchhhcCCCHHHHHHHHHhc-CCCCceEEec
Q 010649 221 K--------GVEIVIATPGRLIDMLESH---NTNLR--R--VTYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTLYWS 284 (505)
Q Consensus 221 ~--------~~~Iiv~T~~~l~~~l~~~---~~~l~--~--~~~lVlDEah~~~~~~~~~~~~~il~~~-~~~~~~v~~S 284 (505)
+ ...|+|||++.++...... ...+. . -+.|||||+|.+-... ...+..++.-+ .....+++||
T Consensus 553 ~~~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~-~~~L~rlL~w~~~lG~~VlLmS 631 (1110)
T TIGR02562 553 LDDKEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED-LPALLRLVQLAGLLGSRVLLSS 631 (1110)
T ss_pred cChhhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH-HHHHHHHHHHHHHcCCCEEEEe
Confidence 0 1369999999988765321 11111 1 2579999999754332 23344444322 2467899999
Q ss_pred CCChHHHHHH-HHHHc----------cC---CcEEEE---cCCCcc----------------------------ccccee
Q 010649 285 ATWPKEVEHL-ARQYL----------YN---PYKVII---GSPDLK----------------------------ANHAIR 319 (505)
Q Consensus 285 AT~~~~~~~~-~~~~~----------~~---~~~~~~---~~~~~~----------------------------~~~~~~ 319 (505)
||+|+.+... .+.|. .. +..+.. ...... .....-
T Consensus 632 ATLP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a 711 (1110)
T TIGR02562 632 ATLPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLA 711 (1110)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceE
Confidence 9999876543 23331 11 111111 110000 000000
Q ss_pred eeeeccC----hhHHHHHHHHHHHh--------hc-----CCCe---EEEEeCCcccHHHHHHHHHhC----C--CCeEE
Q 010649 320 QHVDIVS----ESQKYNKLVKLLED--------IM-----DGSR---ILIFMDTKKGCDQITRQLRMD----G--WPALS 373 (505)
Q Consensus 320 ~~~~~~~----~~~k~~~l~~~l~~--------~~-----~~~~---vlVF~~~~~~~~~l~~~L~~~----~--~~~~~ 373 (505)
..+.+.. .......+.+.+.+ +. .+++ .||-+++++.+-.++..|... + +.+.+
T Consensus 712 ~i~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~ 791 (1110)
T TIGR02562 712 ELLSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCC 791 (1110)
T ss_pred EEeecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEE
Confidence 0111111 11122222222211 10 1122 367788888888888777543 2 34678
Q ss_pred EcCCCCHHHHHHHHHHH----------------------hc----CCCcEEEEcccccccCCCCCCCEEEEcCCCCChhH
Q 010649 374 IHGDKSQAERDWVLSEF----------------------KA----GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLED 427 (505)
Q Consensus 374 lhg~~~~~~r~~~~~~f----------------------~~----g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~ 427 (505)
+|+......|..+++.. ++ +...|+|+|++++.|+|+ +.+++|-- |.++..
T Consensus 792 yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~~--~~~~~s 868 (1110)
T TIGR02562 792 YHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIAD--PSSMRS 868 (1110)
T ss_pred ecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeeec--cCcHHH
Confidence 89998777777666543 11 356799999999999999 56666543 445899
Q ss_pred HHHhhcccccCCCc
Q 010649 428 YVHRIGRTGRAGAK 441 (505)
Q Consensus 428 ~~Qr~GR~~R~g~~ 441 (505)
.+|++||+.|.+..
T Consensus 869 liQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 869 IIQLAGRVNRHRLE 882 (1110)
T ss_pred HHHHhhcccccccC
Confidence 99999999998653
No 152
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.66 E-value=1e-14 Score=163.05 Aligned_cols=337 Identities=20% Similarity=0.239 Sum_probs=216.4
Q ss_pred CCCcHHHHHHHHHHh-----cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 010649 120 FEPTPIQAQGWPMAL-----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l-----~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~ 194 (505)
..++++|.++++++. .+.+.++..++|.|||+..+.. +.++.... ....+.+|++||+ +++.+|.+++.+
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~-l~~~~~~~---~~~~~~~liv~p~-s~~~nw~~e~~k 411 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIAL-LLSLLESI---KVYLGPALIVVPA-SLLSNWKREFEK 411 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHH-HHhhhhcc---cCCCCCeEEEecH-HHHHHHHHHHhh
Confidence 467999999998855 2567888999999999885553 33322221 1114569999998 677889999999
Q ss_pred hcCCCCceEEEEECCCCc----hHHHHHHhcC-----CcEEEeChHHHHHHH-HccCCccCCccEEEEcCcchhhcCCCH
Q 010649 195 FGASSKIKSTCIYGGVPK----GPQVRDLQKG-----VEIVIATPGRLIDML-ESHNTNLRRVTYLVLDEADRMLDMGFE 264 (505)
Q Consensus 195 ~~~~~~i~~~~~~gg~~~----~~~~~~~~~~-----~~Iiv~T~~~l~~~l-~~~~~~l~~~~~lVlDEah~~~~~~~~ 264 (505)
|.+.... +...+|.... ......+... .+++++|++.+...+ ......-..+.++|+||+|++.+.. .
T Consensus 412 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~-s 489 (866)
T COG0553 412 FAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ-S 489 (866)
T ss_pred hCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh-h
Confidence 8766443 5566665541 3334433332 789999999987732 1122334567899999999976543 2
Q ss_pred HHHHHHHHhcCCCCceEEecCCC-hHHHHHH---HH-HHcc---------------CCc---------------------
Q 010649 265 PQIKKILSQIRPDRQTLYWSATW-PKEVEHL---AR-QYLY---------------NPY--------------------- 303 (505)
Q Consensus 265 ~~~~~il~~~~~~~~~v~~SAT~-~~~~~~~---~~-~~~~---------------~~~--------------------- 303 (505)
.....+. .++... .+.+|.|+ .+.+.++ .. ..+. .+.
T Consensus 490 ~~~~~l~-~~~~~~-~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 567 (866)
T COG0553 490 SEGKALQ-FLKALN-RLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRK 567 (866)
T ss_pred HHHHHHH-HHhhcc-eeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHH
Confidence 2222222 222222 24555553 1111000 00 0000 000
Q ss_pred ------------E--EEEcCC---------Ccc-----------c-----ccceee--------------ee--------
Q 010649 304 ------------K--VIIGSP---------DLK-----------A-----NHAIRQ--------------HV-------- 322 (505)
Q Consensus 304 ------------~--~~~~~~---------~~~-----------~-----~~~~~~--------------~~-------- 322 (505)
. +....+ .+. . ...+.+ ..
T Consensus 568 ~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 647 (866)
T COG0553 568 LLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTR 647 (866)
T ss_pred HHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHH
Confidence 0 000000 000 0 000000 00
Q ss_pred --ec-----------------------------------cChh-HHHHHHHHHH-Hhh-cCCC--eEEEEeCCcccHHHH
Q 010649 323 --DI-----------------------------------VSES-QKYNKLVKLL-EDI-MDGS--RILIFMDTKKGCDQI 360 (505)
Q Consensus 323 --~~-----------------------------------~~~~-~k~~~l~~~l-~~~-~~~~--~vlVF~~~~~~~~~l 360 (505)
.+ +... .|...+.+++ ... ..+. ++|||++.....+.+
T Consensus 648 lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il 727 (866)
T COG0553 648 LRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLL 727 (866)
T ss_pred HHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHH
Confidence 00 0011 5777777788 443 3445 899999999999999
Q ss_pred HHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcC--CCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccC
Q 010649 361 TRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG--KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA 438 (505)
Q Consensus 361 ~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g--~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~ 438 (505)
...|+..++....++|.++..+|..+++.|.++ ...+++++.+.+.|+|+..+++||++|+.|++....|...|+.|.
T Consensus 728 ~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~Ri 807 (866)
T COG0553 728 EDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRI 807 (866)
T ss_pred HHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHh
Confidence 999999998999999999999999999999986 445677889999999999999999999999999999999999999
Q ss_pred CCccEEEEEecCccHHHHHHHHHHHHH
Q 010649 439 GAKGTAYTFFTAANARFAKELITILEE 465 (505)
Q Consensus 439 g~~g~~~~~~~~~~~~~~~~l~~~l~~ 465 (505)
|++..+.++-......+.+.+.+....
T Consensus 808 gQ~~~v~v~r~i~~~tiEe~i~~~~~~ 834 (866)
T COG0553 808 GQKRPVKVYRLITRGTIEEKILELQEK 834 (866)
T ss_pred cCcceeEEEEeecCCcHHHHHHHHHHH
Confidence 998766665555444444444444433
No 153
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.65 E-value=1.5e-13 Score=147.04 Aligned_cols=130 Identities=21% Similarity=0.351 Sum_probs=87.5
Q ss_pred HHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhc----CCCcEEEEccccc
Q 010649 331 YNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA----GKSPIMTATDVAA 405 (505)
Q Consensus 331 ~~~l~~~l~~~~-~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~----g~~~vLVaT~~~~ 405 (505)
...+.+.|.... ..+.+|||+++.+..+.++..|....-..+..++.. .+..+++.|++ ++-.||++|..+.
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~ 596 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFA 596 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCCc---hHHHHHHHHHHHhccCCCeEEEEecccc
Confidence 334444443322 334689999999999999999874321234445642 46778877764 6777999999999
Q ss_pred ccCCCCC--CCEEEEcCCCC----C--------------------------hhHHHHhhcccccCCCccEEEEEecCc--
Q 010649 406 RGLDVKD--VKYVINYDFPG----S--------------------------LEDYVHRIGRTGRAGAKGTAYTFFTAA-- 451 (505)
Q Consensus 406 ~Gidi~~--~~~Vi~~~~p~----s--------------------------~~~~~Qr~GR~~R~g~~g~~~~~~~~~-- 451 (505)
+|||+|+ +++||...+|. + ...+.|.+||.-|...+--++++++..
T Consensus 597 EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~~ 676 (697)
T PRK11747 597 EGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRLL 676 (697)
T ss_pred ccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccccc
Confidence 9999997 78898877664 1 123568999999986664455555544
Q ss_pred cHHHHHHHHHHH
Q 010649 452 NARFAKELITIL 463 (505)
Q Consensus 452 ~~~~~~~l~~~l 463 (505)
...+-+.+++.|
T Consensus 677 ~~~Yg~~~l~sL 688 (697)
T PRK11747 677 TKRYGKRLLDAL 688 (697)
T ss_pred chhHHHHHHHhC
Confidence 344555555443
No 154
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.64 E-value=1.2e-14 Score=153.47 Aligned_cols=127 Identities=21% Similarity=0.318 Sum_probs=102.7
Q ss_pred cChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 010649 325 VSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 403 (505)
Q Consensus 325 ~~~~~k~~~l~~~l~~~-~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~ 403 (505)
.....|...+++.+.+. ..+.||||-+.|.+..+.|++.|...+++..++++.....+-+.+-++=+ .-.|-|||++
T Consensus 608 ~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~--~GaVTIATNM 685 (1112)
T PRK12901 608 KTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQ--PGTVTIATNM 685 (1112)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCC--CCcEEEeccC
Confidence 34567788777776664 45669999999999999999999999999999988755444444433322 3349999999
Q ss_pred ccccCCCC--------CCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccH
Q 010649 404 AARGLDVK--------DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (505)
Q Consensus 404 ~~~Gidi~--------~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 453 (505)
++||.||. +==+||-...+.|..--.|-.||+||.|.+|.+-.|++-.|.
T Consensus 686 AGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 686 AGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred cCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 99999997 223788888999999999999999999999999999987763
No 155
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.64 E-value=6e-15 Score=151.33 Aligned_cols=124 Identities=21% Similarity=0.262 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHHhhcC-CCeEEEEeCCcccHHHHHHHHHh----------------------CCCCeEEEcCCCCHHHHH
Q 010649 328 SQKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLRM----------------------DGWPALSIHGDKSQAERD 384 (505)
Q Consensus 328 ~~k~~~l~~~l~~~~~-~~~vlVF~~~~~~~~~l~~~L~~----------------------~~~~~~~lhg~~~~~~r~ 384 (505)
+.|+-.|+++|..+.. +.++|||.++....+.+..+|.. .|.....|.|.....+|+
T Consensus 1125 SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~ 1204 (1567)
T KOG1015|consen 1125 SGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRK 1204 (1567)
T ss_pred CcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHH
Confidence 4566667777776543 56999999999999999999954 235567899999999999
Q ss_pred HHHHHHhcC-C---CcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCc
Q 010649 385 WVLSEFKAG-K---SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 451 (505)
Q Consensus 385 ~~~~~f~~g-~---~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 451 (505)
.....|++- + ..+||+|.+.+-|||+-+++-||+||..|||.--.|.|=|+.|.|+..-||+|-.-.
T Consensus 1205 k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiA 1275 (1567)
T KOG1015|consen 1205 KWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIA 1275 (1567)
T ss_pred HHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhh
Confidence 999999864 1 238999999999999999999999999999999999999999999988777765443
No 156
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.63 E-value=1.8e-13 Score=147.46 Aligned_cols=103 Identities=16% Similarity=0.281 Sum_probs=78.7
Q ss_pred CeEEEEeCCcccHHHHHHHHHhCCCC-eEEEcCCCCHHHHHHHHHHHhcCCC-cEEEEcccccccCCCCC--CCEEEEcC
Q 010649 345 SRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKSQAERDWVLSEFKAGKS-PIMTATDVAARGLDVKD--VKYVINYD 420 (505)
Q Consensus 345 ~~vlVF~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~r~~~~~~f~~g~~-~vLVaT~~~~~Gidi~~--~~~Vi~~~ 420 (505)
+++|||+++.+.++.+++.+...... ....++..+ +...++.|+.+.- .++|+|..+++|||+|+ +..||...
T Consensus 480 ~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~ 556 (654)
T COG1199 480 GGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVG 556 (654)
T ss_pred CCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEe
Confidence 48999999999999999999876542 445555544 4478888886544 89999999999999998 47788777
Q ss_pred CCC------------------------------ChhHHHHhhcccccCCCccEEEEEecC
Q 010649 421 FPG------------------------------SLEDYVHRIGRTGRAGAKGTAYTFFTA 450 (505)
Q Consensus 421 ~p~------------------------------s~~~~~Qr~GR~~R~g~~g~~~~~~~~ 450 (505)
.|. -+..+.|.+||+-|.-.+.-++++++.
T Consensus 557 lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 557 LPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 664 345678999999997666445555554
No 157
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.62 E-value=1.9e-15 Score=116.61 Aligned_cols=81 Identities=46% Similarity=0.735 Sum_probs=77.3
Q ss_pred HHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccC
Q 010649 359 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA 438 (505)
Q Consensus 359 ~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~ 438 (505)
.++..|+..++.+..+||+++..+|..+++.|+++...|||+|+++++|+|+|++++||++++|++..+|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 010649 439 G 439 (505)
Q Consensus 439 g 439 (505)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 158
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.62 E-value=1.5e-13 Score=144.52 Aligned_cols=279 Identities=11% Similarity=0.094 Sum_probs=166.3
Q ss_pred EccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHH---H
Q 010649 142 IAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---D 218 (505)
Q Consensus 142 ~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~ 218 (505)
.+-+|||||.+|+-.+-..+.. +..+|||+|...|..|+.+.++..+.. ..+..++++.+..+... .
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~~--------Gk~vLvLvPEi~lt~q~~~rl~~~f~~--~~v~~lhS~l~~~~R~~~w~~ 235 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLRA--------GRGALVVVPDQRDVDRLEAALRALLGA--GDVAVLSAGLGPADRYRRWLA 235 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHHc--------CCeEEEEecchhhHHHHHHHHHHHcCC--CcEEEECCCCCHHHHHHHHHH
Confidence 3446999999988755444443 778999999999999999999987642 35777888877655433 3
Q ss_pred Hhc-CCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhc--C-C--CHHHHHHHHHhcCCCCceEEecCCChHHHH
Q 010649 219 LQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD--M-G--FEPQIKKILSQIRPDRQTLYWSATWPKEVE 292 (505)
Q Consensus 219 ~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~--~-~--~~~~~~~il~~~~~~~~~v~~SAT~~~~~~ 292 (505)
+.. ...|+|+|-..+ ...+.++.+||+||-|.-.- . . +...=-.++.....+..+|+.|||++-+..
T Consensus 236 ~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~ 308 (665)
T PRK14873 236 VLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQ 308 (665)
T ss_pred HhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHH
Confidence 333 478999996444 44678999999999994332 1 1 121212233334467889999999876555
Q ss_pred HHHHHHccCCcEEEEcCCCcccccceeeeeeccC-----hh-H----HHHHHHHHHHhhcCCCeEEEEeCCcccH-----
Q 010649 293 HLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS-----ES-Q----KYNKLVKLLEDIMDGSRILIFMDTKKGC----- 357 (505)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~----k~~~l~~~l~~~~~~~~vlVF~~~~~~~----- 357 (505)
..+..- ....+..............+.+.... +. . --..+.+.+++..+.+++|||+|.+..+
T Consensus 309 ~~~~~g--~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~lnRrGyap~l~C 386 (665)
T PRK14873 309 ALVESG--WAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVPRRGYVPSLAC 386 (665)
T ss_pred HHHhcC--cceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEecCCCCCCeeEh
Confidence 443321 11111110000000000011111100 00 0 1123445555544444999999987654
Q ss_pred ------------------------------------------------------HHHHHHHHhC--CCCeEEEcCCCCHH
Q 010649 358 ------------------------------------------------------DQITRQLRMD--GWPALSIHGDKSQA 381 (505)
Q Consensus 358 ------------------------------------------------------~~l~~~L~~~--~~~~~~lhg~~~~~ 381 (505)
+.+++.|.+. +.++..+
T Consensus 387 ~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~------- 459 (665)
T PRK14873 387 ARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTS------- 459 (665)
T ss_pred hhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEE-------
Confidence 3333333322 1222222
Q ss_pred HHHHHHHHHhcCCCcEEEEcc----cccccCCCCCCCEEEEcCCCC------------ChhHHHHhhcccccCCCccEEE
Q 010649 382 ERDWVLSEFKAGKSPIMTATD----VAARGLDVKDVKYVINYDFPG------------SLEDYVHRIGRTGRAGAKGTAY 445 (505)
Q Consensus 382 ~r~~~~~~f~~g~~~vLVaT~----~~~~Gidi~~~~~Vi~~~~p~------------s~~~~~Qr~GR~~R~g~~g~~~ 445 (505)
+++.+++.|. ++.+|||+|+ +++ ++++.|+..|... ....+.|..||+||....|.++
T Consensus 460 d~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~ 533 (665)
T PRK14873 460 GGDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVV 533 (665)
T ss_pred ChHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEE
Confidence 2345788887 4999999998 555 3567777665432 2455678999999998889999
Q ss_pred EEecCcc
Q 010649 446 TFFTAAN 452 (505)
Q Consensus 446 ~~~~~~~ 452 (505)
+...+++
T Consensus 534 iq~~p~~ 540 (665)
T PRK14873 534 VVAESSL 540 (665)
T ss_pred EEeCCCC
Confidence 8765443
No 159
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.61 E-value=6e-13 Score=143.61 Aligned_cols=142 Identities=17% Similarity=0.232 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhhcC--CCeEEEEeCCcccHHHHHHHHHhCCC-------CeEEEcCCCCHHHHHHHHHHHhc----CCCc
Q 010649 330 KYNKLVKLLEDIMD--GSRILIFMDTKKGCDQITRQLRMDGW-------PALSIHGDKSQAERDWVLSEFKA----GKSP 396 (505)
Q Consensus 330 k~~~l~~~l~~~~~--~~~vlVF~~~~~~~~~l~~~L~~~~~-------~~~~lhg~~~~~~r~~~~~~f~~----g~~~ 396 (505)
-...+.+.|.+... .+.+|||++|....+.+...+.+.+. ....+-+ -...++..+++.|+. ++-.
T Consensus 506 ~~~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~-~~~~~~~~~l~~f~~~~~~~~ga 584 (705)
T TIGR00604 506 LVRNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVET-KDAQETSDALERYKQAVSEGRGA 584 (705)
T ss_pred HHHHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeC-CCcchHHHHHHHHHHHHhcCCce
Confidence 34455555544322 45799999999999999988876432 1222222 222578889999964 4556
Q ss_pred EEEEc--ccccccCCCCC--CCEEEEcCCCC-Ch------------------------------hHHHHhhcccccCCCc
Q 010649 397 IMTAT--DVAARGLDVKD--VKYVINYDFPG-SL------------------------------EDYVHRIGRTGRAGAK 441 (505)
Q Consensus 397 vLVaT--~~~~~Gidi~~--~~~Vi~~~~p~-s~------------------------------~~~~Qr~GR~~R~g~~ 441 (505)
||+|+ ..+++|||+++ ++.||.+++|. ++ ....|.+||+-|..++
T Consensus 585 vL~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D 664 (705)
T TIGR00604 585 VLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDD 664 (705)
T ss_pred EEEEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCc
Confidence 99999 88999999998 68899888875 11 2346999999998766
Q ss_pred cEEEEEecCccHHHHHHHHHHHHHhCCCCCHHHHHhhcCC
Q 010649 442 GTAYTFFTAANARFAKELITILEEAGQKVSPELAAMGRGA 481 (505)
Q Consensus 442 g~~~~~~~~~~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~ 481 (505)
--++++++.. +.. .+....+|.|+.......
T Consensus 665 ~G~iillD~R---~~~------~~~~~~lp~W~~~~~~~~ 695 (705)
T TIGR00604 665 YGSIVLLDKR---YAR------SNKRKKLPKWIQDTIQSS 695 (705)
T ss_pred eEEEEEEehh---cCC------cchhhhcCHHHHhhcccc
Confidence 4455665443 211 124566888888776654
No 160
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.57 E-value=4.1e-13 Score=139.32 Aligned_cols=289 Identities=17% Similarity=0.212 Sum_probs=183.2
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHH
Q 010649 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~ 217 (505)
-.++.+|+|||||.+. +..+...... ...++|+|+.+++|+.+....++..... ++. .|...... .+.
T Consensus 51 V~vVRSpMGTGKTtaL-i~wLk~~l~~------~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv---~Y~d~~~~-~i~ 118 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTAL-IRWLKDALKN------PDKSVLVVSHRRSLTKSLAERFKKAGLS-GFV---NYLDSDDY-IID 118 (824)
T ss_pred eEEEECCCCCCcHHHH-HHHHHHhccC------CCCeEEEEEhHHHHHHHHHHHHhhcCCC-cce---eeeccccc-ccc
Confidence 3688899999999873 3344443221 2567999999999999999998875421 111 11111110 010
Q ss_pred HHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHH-------HHHHhcCCCCceEEecCCChHH
Q 010649 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIK-------KILSQIRPDRQTLYWSATWPKE 290 (505)
Q Consensus 218 ~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~-------~il~~~~~~~~~v~~SAT~~~~ 290 (505)
....+-+++..+.|..+. ...+.++++|||||+-.++..-|.+.++ .+...++....+|++-|++...
T Consensus 119 --~~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~ 193 (824)
T PF02399_consen 119 --GRPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQ 193 (824)
T ss_pred --ccccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHH
Confidence 123567777777775543 2246679999999999766543333222 2344456788999999999999
Q ss_pred HHHHHHHHccCC-cEEEEcCCCcccccceeeeee-----------------------------------ccChhHHHHHH
Q 010649 291 VEHLARQYLYNP-YKVIIGSPDLKANHAIRQHVD-----------------------------------IVSESQKYNKL 334 (505)
Q Consensus 291 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~k~~~l 334 (505)
..++...+..+. +.+++.... .......+-+. .....+.....
T Consensus 194 tvdFl~~~Rp~~~i~vI~n~y~-~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~ 272 (824)
T PF02399_consen 194 TVDFLASCRPDENIHVIVNTYA-SPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFF 272 (824)
T ss_pred HHHHHHHhCCCCcEEEEEeeee-cCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHH
Confidence 999998876553 333322210 00000000000 00001223344
Q ss_pred HHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCC-
Q 010649 335 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV- 413 (505)
Q Consensus 335 ~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~- 413 (505)
-.++..+..++++-||++|...++.+++........+..+++..+..+ + +.| ++.+|+|-|+++..|+++...
T Consensus 273 ~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~W--~~~~VviYT~~itvG~Sf~~~H 346 (824)
T PF02399_consen 273 SELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ESW--KKYDVVIYTPVITVGLSFEEKH 346 (824)
T ss_pred HHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-ccc--cceeEEEEeceEEEEeccchhh
Confidence 455556667889999999999999999999988888999988766552 2 223 468899999999999999754
Q ss_pred -CEEEEcCCC----CChhHHHHhhcccccCCCccEEEEEecCc
Q 010649 414 -KYVINYDFP----GSLEDYVHRIGRTGRAGAKGTAYTFFTAA 451 (505)
Q Consensus 414 -~~Vi~~~~p----~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 451 (505)
+-|+-|=-| .++.+..|++||+-.. .+...+++++..
T Consensus 347 F~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 347 FDSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred ceEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 223333222 2466789999999444 456677777654
No 161
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.57 E-value=3.3e-12 Score=126.30 Aligned_cols=289 Identities=19% Similarity=0.270 Sum_probs=201.8
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCC-Cce----EEEEEC--------------CCCchHHHHHHhc-----------
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKFGASS-KIK----STCIYG--------------GVPKGPQVRDLQK----------- 221 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~-~i~----~~~~~g--------------g~~~~~~~~~~~~----------- 221 (505)
.|+||||+|+|..|.++.+.+.++.... .+. ...-+| ...+..+...+-.
T Consensus 37 RPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlGi 116 (442)
T PF06862_consen 37 RPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLGI 116 (442)
T ss_pred CceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEeE
Confidence 6999999999999999999888876541 100 000011 0111112221111
Q ss_pred --------------CCcEEEeChHHHHHHHHc------cCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcC---C--
Q 010649 222 --------------GVEIVIATPGRLIDMLES------HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR---P-- 276 (505)
Q Consensus 222 --------------~~~Iiv~T~~~l~~~l~~------~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~---~-- 276 (505)
.+|||||+|=-|...+.. +...|+.+.++|+|.||.++-.. ...+..+++.++ .
T Consensus 117 k~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQN-W~Hv~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 117 KFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQN-WEHVLHVFEHLNLQPKKS 195 (442)
T ss_pred EEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhh-HHHHHHHHHHhccCCCCC
Confidence 258999999888766663 33468999999999999776444 445555555542 1
Q ss_pred -------------------CCceEEecCCChHHHHHHHHHHccCCcEEE-EcCCC------cccccceeeeeeccC----
Q 010649 277 -------------------DRQTLYWSATWPKEVEHLARQYLYNPYKVI-IGSPD------LKANHAIRQHVDIVS---- 326 (505)
Q Consensus 277 -------------------~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~---- 326 (505)
-+|+|++|+...+++..+....+.+..-.. +.... ......+.|.+...+
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~ 275 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSP 275 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCc
Confidence 269999999999999999998776643221 11111 122333445444321
Q ss_pred ---hhHHHHHHHH-HHHhhc---CCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q 010649 327 ---ESQKYNKLVK-LLEDIM---DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMT 399 (505)
Q Consensus 327 ---~~~k~~~l~~-~l~~~~---~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLV 399 (505)
...+.....+ +|..+. ....+|||+++--+--.+.++|++.++....+|...+..+-..+-..|.+|+.+||+
T Consensus 276 ~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL 355 (442)
T PF06862_consen 276 ADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILL 355 (442)
T ss_pred chhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEE
Confidence 2344444443 333333 345899999999999999999999999999999999999999999999999999999
Q ss_pred Ecccc--cccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCC------ccEEEEEecCccHHHHHHHHH
Q 010649 400 ATDVA--ARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGA------KGTAYTFFTAANARFAKELIT 461 (505)
Q Consensus 400 aT~~~--~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~------~g~~~~~~~~~~~~~~~~l~~ 461 (505)
.|.=+ -+=..|.++..||+|.+|..+.-|...+.-...... ...|.++++.-|.-.++.|+-
T Consensus 356 ~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVG 425 (442)
T PF06862_consen 356 YTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVG 425 (442)
T ss_pred EEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhC
Confidence 99543 466788899999999999999988888765554432 579999999988766666654
No 162
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.44 E-value=1.2e-12 Score=127.46 Aligned_cols=156 Identities=19% Similarity=0.190 Sum_probs=94.1
Q ss_pred HHHHHHHHHhc-------------CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHH
Q 010649 125 IQAQGWPMALK-------------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 191 (505)
Q Consensus 125 ~Q~~~i~~~l~-------------~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~ 191 (505)
||.+++.+++. .+.++++.++|+|||++++. ++..+..... ......+|||||. .+..||..+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~-~~~~l~~~~~--~~~~~~~LIv~P~-~l~~~W~~E 76 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIA-LISYLKNEFP--QRGEKKTLIVVPS-SLLSQWKEE 76 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHH-HHHHHHHCCT--TSS-S-EEEEE-T-TTHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhh-hhhhhhhccc--cccccceeEeecc-chhhhhhhh
Confidence 68888877642 35699999999999998665 4444443211 1112349999999 888999999
Q ss_pred HHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHc---cCCccCCccEEEEcCcchhhcCCCHHHHH
Q 010649 192 STKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES---HNTNLRRVTYLVLDEADRMLDMGFEPQIK 268 (505)
Q Consensus 192 ~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~---~~~~l~~~~~lVlDEah~~~~~~~~~~~~ 268 (505)
+.++.....+++..+.+...............+++|+|++.+...... ..+.-.++++||+||+|.+.+.. ....
T Consensus 77 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~--s~~~ 154 (299)
T PF00176_consen 77 IEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD--SKRY 154 (299)
T ss_dssp HHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT--SHHH
T ss_pred hccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccc--cccc
Confidence 999986555666666655412222222234578999999999711000 01111348899999999996543 3333
Q ss_pred HHHHhcCCCCceEEecCCC
Q 010649 269 KILSQIRPDRQTLYWSATW 287 (505)
Q Consensus 269 ~il~~~~~~~~~v~~SAT~ 287 (505)
..+..+. ....+++|||+
T Consensus 155 ~~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 155 KALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp HHHHCCC-ECEEEEE-SS-
T ss_pred ccccccc-cceEEeecccc
Confidence 4444465 66778899996
No 163
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.39 E-value=2.4e-11 Score=127.22 Aligned_cols=317 Identities=19% Similarity=0.211 Sum_probs=199.7
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010649 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~ 200 (505)
-++|+-.|.+-.+.-+..-++-+.||-|||+++.+|+.-..+. +..|.+|+..--||.--.+++..+....+
T Consensus 78 g~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~--------gkgVhvVTvNdYLA~RDae~m~~l~~~LG 149 (822)
T COG0653 78 GMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA--------GKGVHVVTVNDYLARRDAEWMGPLYEFLG 149 (822)
T ss_pred CCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC--------CCCcEEeeehHHhhhhCHHHHHHHHHHcC
Confidence 4466666666666666778899999999999999998776665 66699999999999988999999888899
Q ss_pred ceEEEEECCCCchHHHHHHhcCCcEEEeChHHHH-HHHH-----c-cCCccCCccEEEEcCcchhhc----------C--
Q 010649 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-DMLE-----S-HNTNLRRVTYLVLDEADRMLD----------M-- 261 (505)
Q Consensus 201 i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~-~~l~-----~-~~~~l~~~~~lVlDEah~~~~----------~-- 261 (505)
+.+.+...+.+....... -.|||+.+|...|- +.+. + .......+.+.|+||+|.++= .
T Consensus 150 lsvG~~~~~m~~~ek~~a--Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~ 227 (822)
T COG0653 150 LSVGVILAGMSPEEKRAA--YACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPA 227 (822)
T ss_pred CceeeccCCCChHHHHHH--HhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeeccc
Confidence 999999988866544443 35899999987651 2221 1 122345678999999996541 0
Q ss_pred ----CCHHHHHHHHHhcCCC--------CceEEecCC-------------------------------------------
Q 010649 262 ----GFEPQIKKILSQIRPD--------RQTLYWSAT------------------------------------------- 286 (505)
Q Consensus 262 ----~~~~~~~~il~~~~~~--------~~~v~~SAT------------------------------------------- 286 (505)
.....+..++..+... .+.|.+|-.
T Consensus 228 ~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYI 307 (822)
T COG0653 228 EDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYI 307 (822)
T ss_pred ccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeE
Confidence 1122333333332211 111222211
Q ss_pred ------------------------------------------------------------------ChHHHHHHHHHHcc
Q 010649 287 ------------------------------------------------------------------WPKEVEHLARQYLY 300 (505)
Q Consensus 287 ------------------------------------------------------------------~~~~~~~~~~~~~~ 300 (505)
...+..++...|..
T Consensus 308 Vrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l 387 (822)
T COG0653 308 VRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGL 387 (822)
T ss_pred EecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCC
Confidence 11111111111111
Q ss_pred CCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHh-hcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCC
Q 010649 301 NPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 379 (505)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~ 379 (505)
+...+....+. .... ...........|...+++.+.. +..+.|+||-+.+.+..+.+++.|.+.+++..++...-.
T Consensus 388 ~vv~iPTnrp~--~R~D-~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h 464 (822)
T COG0653 388 DVVVIPTNRPI--IRLD-EPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH 464 (822)
T ss_pred ceeeccCCCcc--cCCC-CccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH
Confidence 11110000000 0000 0111223456677777766665 455679999999999999999999999999999988766
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCC-----------EEEEcCCCCChhHHHHhhcccccCCCccEEEEEe
Q 010649 380 QAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVK-----------YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFF 448 (505)
Q Consensus 380 ~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~-----------~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 448 (505)
..+-..+-+.-+ .--|-|||+++++|-||.--. +||-...-.|-.---|-.||+||.|-+|.+-.|+
T Consensus 465 ~~EA~Iia~AG~--~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~l 542 (822)
T COG0653 465 AREAEIIAQAGQ--PGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYL 542 (822)
T ss_pred HHHHHHHhhcCC--CCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhh
Confidence 444333333222 234889999999999986322 3444444445555569999999999888887777
Q ss_pred cCcc
Q 010649 449 TAAN 452 (505)
Q Consensus 449 ~~~~ 452 (505)
+-.|
T Consensus 543 SleD 546 (822)
T COG0653 543 SLED 546 (822)
T ss_pred hhHH
Confidence 6554
No 164
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.37 E-value=7.4e-11 Score=129.78 Aligned_cols=297 Identities=14% Similarity=0.134 Sum_probs=164.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHH
Q 010649 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 216 (505)
+..+|+.-||||||++.+. +...+... ...|+|+||+.++.|-.|+.+++..+........ ...+.....
T Consensus 274 ~~G~IWHtqGSGKTlTm~~-~A~~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk 343 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFK-LARLLLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELK 343 (962)
T ss_pred CceEEEeecCCchHHHHHH-HHHHHHhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHH
Confidence 4599999999999998443 44444443 3588999999999999999999999876543221 222333334
Q ss_pred HHHhcC-CcEEEeChHHHHHHHHccC--CccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHH
Q 010649 217 RDLQKG-VEIVIATPGRLIDMLESHN--TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEH 293 (505)
Q Consensus 217 ~~~~~~-~~Iiv~T~~~l~~~l~~~~--~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~ 293 (505)
..+... ..|+|||.++|...+.... ..-.+-=+||+|||||--. +..-..+-..+ +....++||+|+-..-..
T Consensus 344 ~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~---G~~~~~~~~~~-~~a~~~gFTGTPi~~~d~ 419 (962)
T COG0610 344 ELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY---GELAKLLKKAL-KKAIFIGFTGTPIFKEDK 419 (962)
T ss_pred HHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccc---cHHHHHHHHHh-ccceEEEeeCCccccccc
Confidence 444433 4899999999987776541 1112223689999998543 22222333333 447889999997332211
Q ss_pred H-HHHHccCCcEEEEcCCCcccccceeeeeec-----------------c-------C--------------------hh
Q 010649 294 L-ARQYLYNPYKVIIGSPDLKANHAIRQHVDI-----------------V-------S--------------------ES 328 (505)
Q Consensus 294 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~-------~--------------------~~ 328 (505)
. ......+.+....-.+.......+...+.. . . ..
T Consensus 420 ~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 499 (962)
T COG0610 420 DTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAV 499 (962)
T ss_pred cchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchH
Confidence 1 122222222221111110000000000000 0 0 00
Q ss_pred HH---HHHHHHHHHh-hcCCCeEEEEeCCcccHHHHHHHHHhCCCCe-----------------------EEEcCCCCHH
Q 010649 329 QK---YNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMDGWPA-----------------------LSIHGDKSQA 381 (505)
Q Consensus 329 ~k---~~~l~~~l~~-~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~-----------------------~~lhg~~~~~ 381 (505)
.. ...+.+.... ...+.++.+.|.++..|..+.+......... ...|.. ...
T Consensus 500 r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~ 578 (962)
T COG0610 500 RLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK-LKD 578 (962)
T ss_pred HHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-HHH
Confidence 00 0111111222 1223477777777774444443332210000 000111 122
Q ss_pred HHHHHHHHH--hcCCCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCC----ccEEEEEec
Q 010649 382 ERDWVLSEF--KAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGA----KGTAYTFFT 449 (505)
Q Consensus 382 ~r~~~~~~f--~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~----~g~~~~~~~ 449 (505)
.+.....+| +....++||.++++-+|+|.|.++.+. +|-|--.-..+|.+-|+.|.-. .|..+.|..
T Consensus 579 ~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 579 EKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred HHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 333444443 456889999999999999999887664 5666667889999999999522 254444444
No 165
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.36 E-value=2.3e-12 Score=106.52 Aligned_cols=135 Identities=19% Similarity=0.178 Sum_probs=81.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 215 (505)
|+-.++-..+|+|||.-.+.-++.+.... +.++|||.|||.++..+.+.++... +++.. .-. .
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~-------~~rvLvL~PTRvva~em~~aL~~~~----~~~~t--~~~-~--- 66 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKR-------RLRVLVLAPTRVVAEEMYEALKGLP----VRFHT--NAR-M--- 66 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHT-------T--EEEEESSHHHHHHHHHHTTTSS----EEEES--TTS-S---
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHc-------cCeEEEecccHHHHHHHHHHHhcCC----cccCc--eee-e---
Confidence 44568889999999987565555555542 7789999999999998888886532 22211 100 0
Q ss_pred HHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhc--CCCCceEEecCCChHHH
Q 010649 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI--RPDRQTLYWSATWPKEV 291 (505)
Q Consensus 216 ~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~--~~~~~~v~~SAT~~~~~ 291 (505)
.....+.-|-++|+..+.+++.+ ...+.+++++|+||||..-... -..+..+..+ .....+|+||||+|-..
T Consensus 67 -~~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~s--IA~rg~l~~~~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 67 -RTHFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTS--IAARGYLRELAESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp -----SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHH--HHHHHHHHHHHHTTS-EEEEEESS-TT--
T ss_pred -ccccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHH--HhhheeHHHhhhccCeeEEEEeCCCCCCC
Confidence 11234567889999999888776 5557899999999999643221 1111122222 23457999999998644
No 166
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=3.7e-10 Score=110.39 Aligned_cols=343 Identities=20% Similarity=0.217 Sum_probs=221.2
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEE-ccCCCch--HHHHHHHHHHHHhcCCC---------CC--------------CCC
Q 010649 118 GFFEPTPIQAQGWPMALKGRDLIGI-AETGSGK--TLAYLLPAIVHVNAQPF---------LA--------------PGD 171 (505)
Q Consensus 118 ~~~~~~~~Q~~~i~~~l~~~~~li~-a~TGsGK--T~~~~~~~l~~l~~~~~---------~~--------------~~~ 171 (505)
.-..+|+.|.+.+..+.+.+|++.. ...+.|+ +-+|.+.++.|+..... .. .-.
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 3457999999999999999997654 2234455 56678888888854210 00 112
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCc-e--------EEEEECC--------CCchHHHHHH---------------
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKFGASSKI-K--------STCIYGG--------VPKGPQVRDL--------------- 219 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i-~--------~~~~~gg--------~~~~~~~~~~--------------- 219 (505)
.|+||||||+|+-|..+...+..++...+- + ...-+++ .++....+.+
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 689999999999999999998887433221 0 1111121 0001111111
Q ss_pred ----------hcCCcEEEeChHHHHHHHHc------cCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCC-------
Q 010649 220 ----------QKGVEIVIATPGRLIDMLES------HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRP------- 276 (505)
Q Consensus 220 ----------~~~~~Iiv~T~~~l~~~l~~------~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~------- 276 (505)
-...||+||+|=-|.-++.. ....|+.+.++|+|-||.++... ...+..++..+..
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN-wEhl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN-WEHLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh-HHHHHHHHHHhhcCcccccC
Confidence 12368999999887666652 22357889999999999988665 3445555555431
Q ss_pred -----------------CCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCc------ccccceeeee---ec----cC
Q 010649 277 -----------------DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDL------KANHAIRQHV---DI----VS 326 (505)
Q Consensus 277 -----------------~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~---~~----~~ 326 (505)
-+|+++||+--.+....+...++.+..-......-. .....+.|.+ .+ ..
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~ 531 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIET 531 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccC
Confidence 148888888877778788777776543222111110 0011111111 11 11
Q ss_pred hhHHHHHHHHHHH-hhcC--CCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 010649 327 ESQKYNKLVKLLE-DIMD--GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 403 (505)
Q Consensus 327 ~~~k~~~l~~~l~-~~~~--~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~ 403 (505)
...+.......+- .+.+ ...+||+.++--.--.+..++++..+....+|.-.++..-..+-+-|-.|...||+-|.-
T Consensus 532 ~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER 611 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTER 611 (698)
T ss_pred chHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehh
Confidence 2334444443221 1111 236899999999999999999998888888888877877778888899999999999965
Q ss_pred c--cccCCCCCCCEEEEcCCCCChhHHH---HhhcccccCC----CccEEEEEecCccHHHHHHHHH
Q 010649 404 A--ARGLDVKDVKYVINYDFPGSLEDYV---HRIGRTGRAG----AKGTAYTFFTAANARFAKELIT 461 (505)
Q Consensus 404 ~--~~Gidi~~~~~Vi~~~~p~s~~~~~---Qr~GR~~R~g----~~g~~~~~~~~~~~~~~~~l~~ 461 (505)
+ -+-.+|.+|..||.|.+|.+|.-|. -+.+|+.-.| ..-.|.++++.-|.--+..++-
T Consensus 612 ~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivG 678 (698)
T KOG2340|consen 612 AHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVG 678 (698)
T ss_pred hhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhh
Confidence 4 4778999999999999999987664 5555654333 2247888888877655555544
No 167
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.29 E-value=3.9e-11 Score=123.48 Aligned_cols=305 Identities=19% Similarity=0.246 Sum_probs=180.6
Q ss_pred HHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH-----hcCCCCceEE
Q 010649 130 WPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-----FGASSKIKST 204 (505)
Q Consensus 130 i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~-----~~~~~~i~~~ 204 (505)
+..+..++-+++.+.||+|||..+.--+|..+..+.. +...-+.+.-|++..+.-+.+.+.+ .+......+
T Consensus 387 ~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~---g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~v- 462 (1282)
T KOG0921|consen 387 LQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSN---GASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNV- 462 (1282)
T ss_pred HHHHhcCceeeEeecccccchhHHHHHHHHHHhhccc---cccccceeccccccchHHHHHHHHHhhHHhhcccccccc-
Confidence 3344455668999999999999988888887776532 2223377778888777666665443 221111111
Q ss_pred EEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhh-cCCCHHHHHHHHHhcCCCCceEEe
Q 010649 205 CIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML-DMGFEPQIKKILSQIRPDRQTLYW 283 (505)
Q Consensus 205 ~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~-~~~~~~~~~~il~~~~~~~~~v~~ 283 (505)
. ........---|.+||.+-+++++++. +..+.++|+||+|... +..|...+..-+....++..+++|
T Consensus 463 -------R-f~Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lm 531 (1282)
T KOG0921|consen 463 -------R-FDSATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLM 531 (1282)
T ss_pred -------c-ccccccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhh
Confidence 0 000001112358899999999988765 3457789999999533 222332222222222345556666
Q ss_pred cCCChHH--------------------HHHHHHHHccCCcEEEEcCCCc----------ccccc-eeeeeecc-------
Q 010649 284 SATWPKE--------------------VEHLARQYLYNPYKVIIGSPDL----------KANHA-IRQHVDIV------- 325 (505)
Q Consensus 284 SAT~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~----------~~~~~-~~~~~~~~------- 325 (505)
|||+..+ ++.+....+..+.......... ..... ....+...
T Consensus 532 satIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~ 611 (1282)
T KOG0921|consen 532 SATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNE 611 (1282)
T ss_pred hcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcc
Confidence 6664322 2222222222221111111000 00000 00000000
Q ss_pred ---------Chh----HHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC-------CCCeEEEcCCCCHHHHHH
Q 010649 326 ---------SES----QKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD-------GWPALSIHGDKSQAERDW 385 (505)
Q Consensus 326 ---------~~~----~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~-------~~~~~~lhg~~~~~~r~~ 385 (505)
.+. .-.+.+...+....-.+-++||.+-....-.|...|... .+++..+|+.....+..+
T Consensus 612 ~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrk 691 (1282)
T KOG0921|consen 612 STRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRK 691 (1282)
T ss_pred hhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhh
Confidence 001 111122222222222357999999999888888887542 467888999999999999
Q ss_pred HHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCC------------------CCChhHHHHhhcccccCCCccEEEEE
Q 010649 386 VLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF------------------PGSLEDYVHRIGRTGRAGAKGTAYTF 447 (505)
Q Consensus 386 ~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~ 447 (505)
+.+....|..+++++|.+++..+.+.++..||..+. ..+....+||.||++|. +.|.|+.+
T Consensus 692 vf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~l 770 (1282)
T KOG0921|consen 692 VFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHL 770 (1282)
T ss_pred ccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccc
Confidence 999999999999999999999999988887774432 22667789999999998 77888877
Q ss_pred ecC
Q 010649 448 FTA 450 (505)
Q Consensus 448 ~~~ 450 (505)
+..
T Consensus 771 cs~ 773 (1282)
T KOG0921|consen 771 CSR 773 (1282)
T ss_pred cHH
Confidence 654
No 168
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.23 E-value=1.5e-10 Score=111.07 Aligned_cols=73 Identities=26% Similarity=0.196 Sum_probs=57.7
Q ss_pred CCcHHHHHHHHH----HhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010649 121 EPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (505)
Q Consensus 121 ~~~~~Q~~~i~~----~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 195 (505)
+|+|.|.+.+.. +..+.++++.||||+|||+++++|++.++...... ..+.+++|+++|.++..|...++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 569999995554 45688999999999999999999999877653211 01347999999999999988877765
No 169
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.23 E-value=1.5e-10 Score=111.07 Aligned_cols=73 Identities=26% Similarity=0.196 Sum_probs=57.7
Q ss_pred CCcHHHHHHHHH----HhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010649 121 EPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (505)
Q Consensus 121 ~~~~~Q~~~i~~----~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 195 (505)
+|+|.|.+.+.. +..+.++++.||||+|||+++++|++.++...... ..+.+++|+++|.++..|...++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 569999995554 45688999999999999999999999877653211 01347999999999999988877765
No 170
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.23 E-value=2.4e-10 Score=115.89 Aligned_cols=117 Identities=19% Similarity=0.301 Sum_probs=97.8
Q ss_pred CeEEEEeCCcccHHHHHHHHHhCCCC------------------eEEEcCCCCHHHHHHHHHHHhcCC---CcEEEEccc
Q 010649 345 SRILIFMDTKKGCDQITRQLRMDGWP------------------ALSIHGDKSQAERDWVLSEFKAGK---SPIMTATDV 403 (505)
Q Consensus 345 ~~vlVF~~~~~~~~~l~~~L~~~~~~------------------~~~lhg~~~~~~r~~~~~~f~~g~---~~vLVaT~~ 403 (505)
.++|||.......+.+...|.+..++ ...+.|..+..+|++.+++|.+-. .-+|++|..
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 47999999999999999999764322 335788889999999999998642 238889999
Q ss_pred ccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHH
Q 010649 404 AARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIT 461 (505)
Q Consensus 404 ~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 461 (505)
..-|||+-..+-+|.||..|++-.-.|.+.|+.|.|+...|+++-.--|..+.+.|.+
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIyd 857 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYD 857 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHH
Confidence 9999999999999999999999999999999999999999998877766666555554
No 171
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=99.13 E-value=2.8e-08 Score=106.83 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=60.0
Q ss_pred CCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCC--Ccc--------EEEEEecCccHHHHHHHHHHH
Q 010649 394 KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAG--AKG--------TAYTFFTAANARFAKELITIL 463 (505)
Q Consensus 394 ~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g--~~g--------~~~~~~~~~~~~~~~~l~~~l 463 (505)
..+++++-+++.+|.|.|++-+++-+....|...-.|.+||..|.- +.| .-.++.+.....++..|+.-.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 6779999999999999999999999998889999999999999942 112 234566677888999998877
Q ss_pred HHh
Q 010649 464 EEA 466 (505)
Q Consensus 464 ~~~ 466 (505)
.+.
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 664
No 172
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.10 E-value=7.2e-10 Score=116.27 Aligned_cols=119 Identities=18% Similarity=0.210 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHhhc-CC-CeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCC-c-EEEEccc
Q 010649 328 SQKYNKLVKLLEDIM-DG-SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS-P-IMTATDV 403 (505)
Q Consensus 328 ~~k~~~l~~~l~~~~-~~-~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~-~-vLVaT~~ 403 (505)
..|+..+...|.... .. .+++||++-...++.+...|...++....+.|.|+...|.+.+..|..+.. . .+++..+
T Consensus 521 s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slka 600 (674)
T KOG1001|consen 521 SSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKA 600 (674)
T ss_pred hhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHH
Confidence 334444444444221 12 289999999999999999999889999999999999999999999996533 3 4557799
Q ss_pred ccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEE
Q 010649 404 AARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYT 446 (505)
Q Consensus 404 ~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~ 446 (505)
...|+|+..+.+|+..|+.||+....|.+.|+.|.|+.-.+.+
T Consensus 601 g~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 601 GKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred hhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 9999999999999999999999999999999999999866555
No 173
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.01 E-value=8.9e-09 Score=96.18 Aligned_cols=129 Identities=26% Similarity=0.291 Sum_probs=95.8
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 010649 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (505)
Q Consensus 119 ~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~ 198 (505)
-..|++.|.-++-.+..|+ |+...||-|||+++.+|++.+.+. |..|-|++.+..||..=++++..+...
T Consensus 75 g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~--------G~~V~vvT~NdyLA~RD~~~~~~~y~~ 144 (266)
T PF07517_consen 75 GLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ--------GKGVHVVTSNDYLAKRDAEEMRPFYEF 144 (266)
T ss_dssp S----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT--------SS-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhccHHHHHHHHHH
Confidence 3478888888886665554 999999999999998888877775 777999999999999999999999999
Q ss_pred CCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHH-HHHHcc------CCccCCccEEEEcCcchhh
Q 010649 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-DMLESH------NTNLRRVTYLVLDEADRML 259 (505)
Q Consensus 199 ~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~-~~l~~~------~~~l~~~~~lVlDEah~~~ 259 (505)
.++.+.+++.+.+....... -.++|+.+|...+. ++|... ......+.++||||+|.++
T Consensus 145 LGlsv~~~~~~~~~~~r~~~--Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 145 LGLSVGIITSDMSSEERREA--YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp TT--EEEEETTTEHHHHHHH--HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hhhccccCccccCHHHHHHH--HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 99999999998775433322 34689999998875 334321 1124678999999999765
No 174
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.81 E-value=9.9e-09 Score=108.18 Aligned_cols=259 Identities=19% Similarity=0.218 Sum_probs=160.7
Q ss_pred CcHHHHHHHHHHhc-CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010649 122 PTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (505)
Q Consensus 122 ~~~~Q~~~i~~~l~-~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~ 200 (505)
..|.|.+.+-.... ..++++.+|||+|||++|.++++..+...+ +.++++++|-++|+..-.+.+.+.....+
T Consensus 928 fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p------~~kvvyIap~kalvker~~Dw~~r~~~~g 1001 (1230)
T KOG0952|consen 928 FNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP------GSKVVYIAPDKALVKERSDDWSKRDELPG 1001 (1230)
T ss_pred cCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC------CccEEEEcCCchhhcccccchhhhcccCC
Confidence 34556555544433 356889999999999999998777666643 57799999999999887777776555558
Q ss_pred ceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHc--cCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhc----
Q 010649 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES--HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI---- 274 (505)
Q Consensus 201 i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~--~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~---- 274 (505)
+++..+.|....+ ...+ ...+++|+||+++.....+ ....+.+++.+|+||.|.+.+. +.+.++.+....
T Consensus 1002 ~k~ie~tgd~~pd--~~~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~s 1077 (1230)
T KOG0952|consen 1002 IKVIELTGDVTPD--VKAV-READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYIS 1077 (1230)
T ss_pred ceeEeccCccCCC--hhhe-ecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccCc
Confidence 8999999887765 2222 3479999999999777663 3456788999999999987654 344444443332
Q ss_pred ---CCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeee-------eccChhHHHHHHHHHHHhhcCC
Q 010649 275 ---RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHV-------DIVSESQKYNKLVKLLEDIMDG 344 (505)
Q Consensus 275 ---~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~k~~~l~~~l~~~~~~ 344 (505)
.+..+.+++|-- .....+++.+....+. .... ...........+ ++.....+..-....++...+.
T Consensus 1078 ~~t~~~vr~~glsta-~~na~dla~wl~~~~~-~nf~--~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~ 1153 (1230)
T KOG0952|consen 1078 SQTEEPVRYLGLSTA-LANANDLADWLNIKDM-YNFR--PSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPI 1153 (1230)
T ss_pred cccCcchhhhhHhhh-hhccHHHHHHhCCCCc-CCCC--cccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCC
Confidence 234455555533 2334445444332222 1110 001111111111 1112223344455667778888
Q ss_pred CeEEEEeCCcccH----HHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCc
Q 010649 345 SRILIFMDTKKGC----DQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSP 396 (505)
Q Consensus 345 ~~vlVF~~~~~~~----~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~ 396 (505)
.++|||+.+++.. ..+...+....-+..+++.+ ..+-+.++...++...+
T Consensus 1154 ~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~d--e~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1154 KPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMD--ELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred CceEEEeecccccccchHhHHhhccCCCCchhccCCC--HHHHHHHHHHhcccchh
Confidence 8999999887764 44444444444445556555 66667777766665544
No 175
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.81 E-value=1.3e-07 Score=101.82 Aligned_cols=66 Identities=18% Similarity=0.063 Sum_probs=56.0
Q ss_pred CCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCCC
Q 010649 222 GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW 287 (505)
Q Consensus 222 ~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~ 287 (505)
...|+++||..|..-+..+..++.+++.|||||||++....-...+..+...-++..-+.+|||.+
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP 72 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNP 72 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCC
Confidence 358999999999888888899999999999999999987666777777777777777888888883
No 176
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.65 E-value=3.7e-07 Score=85.58 Aligned_cols=173 Identities=16% Similarity=0.163 Sum_probs=110.3
Q ss_pred cCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc----------CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCC
Q 010649 102 RDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALK----------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGD 171 (505)
Q Consensus 102 ~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~----------~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~ 171 (505)
-.+.+|+.+++. -.+...|.+++-.+-+ ....++-..||.||-....-.++.++...
T Consensus 24 y~~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G------- 90 (303)
T PF13872_consen 24 YRLHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG------- 90 (303)
T ss_pred cccCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-------
Confidence 345688876553 2578889998865532 23478889999999876554456665552
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHcc---CCcc----
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH---NTNL---- 244 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~---~~~l---- 244 (505)
.++.|+++.+..|.......++.++.. .+.+..+..-. ... . ..-...|+++||..|...-... ...+
T Consensus 91 r~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~-~~~-~--~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~ 165 (303)
T PF13872_consen 91 RKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFK-YGD-I--IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLV 165 (303)
T ss_pred CCceEEEECChhhhhHHHHHHHHhCCC-cccceechhhc-cCc-C--CCCCCCccchhHHHHHhHHhccCCccchHHHHH
Confidence 446999999999999999999988754 34443332211 100 0 1223579999999987764321 1111
Q ss_pred ----CCc-cEEEEcCcchhhcCCC--------HHHHHHHHHhcCCCCceEEecCCChHHHHH
Q 010649 245 ----RRV-TYLVLDEADRMLDMGF--------EPQIKKILSQIRPDRQTLYWSATWPKEVEH 293 (505)
Q Consensus 245 ----~~~-~~lVlDEah~~~~~~~--------~~~~~~il~~~~~~~~~v~~SAT~~~~~~~ 293 (505)
.++ .+|||||||.+.+..- ...+..+-..+ |+.++|.+|||.-.+...
T Consensus 166 ~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L-P~ARvvY~SATgasep~N 226 (303)
T PF13872_consen 166 DWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL-PNARVVYASATGASEPRN 226 (303)
T ss_pred HHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhC-CCCcEEEecccccCCCce
Confidence 112 4899999998876532 12333444455 566799999997554433
No 177
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.64 E-value=1.8e-07 Score=84.65 Aligned_cols=123 Identities=20% Similarity=0.221 Sum_probs=74.9
Q ss_pred CCcHHHHHHHHHHhcCC--cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 010649 121 EPTPIQAQGWPMALKGR--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~--~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~ 198 (505)
+|++-|.+++..++... -.++.++.|+|||.+ +..+...+... +.++++++||...+..+.+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~-------g~~v~~~apT~~Aa~~L~~~~~----- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAA-------GKRVIGLAPTNKAAKELREKTG----- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHT-------T--EEEEESSHHHHHHHHHHHT-----
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhC-------CCeEEEECCcHHHHHHHHHhhC-----
Confidence 46889999999997544 377889999999976 44455555542 5779999999988877655521
Q ss_pred CCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccC----CccCCccEEEEcCcchhhcCCCHHHHHHHHHhc
Q 010649 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN----TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI 274 (505)
Q Consensus 199 ~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~----~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~ 274 (505)
+-..|..+++....... ..+...++||||||-.+. ...+..++..+
T Consensus 68 --------------------------~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~ 117 (196)
T PF13604_consen 68 --------------------------IEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLA 117 (196)
T ss_dssp --------------------------S-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS
T ss_pred --------------------------cchhhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHH
Confidence 11122222211111111 115567899999999876 56777888877
Q ss_pred CC-CCceEEecCC
Q 010649 275 RP-DRQTLYWSAT 286 (505)
Q Consensus 275 ~~-~~~~v~~SAT 286 (505)
+. ..++|++--+
T Consensus 118 ~~~~~klilvGD~ 130 (196)
T PF13604_consen 118 KKSGAKLILVGDP 130 (196)
T ss_dssp -T-T-EEEEEE-T
T ss_pred HhcCCEEEEECCc
Confidence 66 5666666544
No 178
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.63 E-value=5.7e-06 Score=86.29 Aligned_cols=72 Identities=17% Similarity=0.184 Sum_probs=58.6
Q ss_pred CCCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccC--CCccE-----------EEEEecCccHHHHHHH
Q 010649 393 GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA--GAKGT-----------AYTFFTAANARFAKEL 459 (505)
Q Consensus 393 g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~--g~~g~-----------~~~~~~~~~~~~~~~l 459 (505)
...+++++-.++-+|.|-|+|=.++-+....|..+=.|-+||..|. .+.|. -.+++...+..+++.|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 3578999999999999999999999999999999999999999993 23332 3456777788888888
Q ss_pred HHHHH
Q 010649 460 ITILE 464 (505)
Q Consensus 460 ~~~l~ 464 (505)
++-+.
T Consensus 562 qkEI~ 566 (985)
T COG3587 562 QKEIN 566 (985)
T ss_pred HHHHH
Confidence 77443
No 179
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.61 E-value=5.2e-07 Score=84.28 Aligned_cols=73 Identities=21% Similarity=0.228 Sum_probs=50.9
Q ss_pred CCcHHHHHHHHHHhcCCc-EEEEccCCCchHHHHHHHHHHHHhcCC-CCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 010649 121 EPTPIQAQGWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQP-FLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~-~li~a~TGsGKT~~~~~~~l~~l~~~~-~~~~~~~~~vlil~Pt~~La~Q~~~~~~~ 194 (505)
+|++.|.+|+..++.... .+|.+|+|+|||.+ +..++..+.... ......+.++|+++|+..-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999888 99999999999965 333555542100 00112377899999999999999998888
No 180
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.55 E-value=6.3e-07 Score=80.46 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=75.3
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 010649 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~ 199 (505)
...++.|..++.+++...-+++.+|.|+|||+.++..++..+... ...+++|+-|..+..+. +.-+-...
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g------~~~kiii~Rp~v~~~~~----lGflpG~~ 72 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG------EYDKIIITRPPVEAGED----LGFLPGDL 72 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT------S-SEEEEEE-S--TT--------SS----
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC------CCcEEEEEecCCCCccc----cccCCCCH
Confidence 356889999999999777899999999999999998888887763 35678888887654211 11000000
Q ss_pred CceEEE-------EECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHH
Q 010649 200 KIKSTC-------IYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILS 272 (505)
Q Consensus 200 ~i~~~~-------~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~ 272 (505)
.-+... .............+.....|-+.....+ . ...+. -.+||+|||+.+. ..+++.++.
T Consensus 73 ~eK~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~i----R--Grt~~-~~~iIvDEaQN~t----~~~~k~ilT 141 (205)
T PF02562_consen 73 EEKMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFI----R--GRTFD-NAFIIVDEAQNLT----PEELKMILT 141 (205)
T ss_dssp -----TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGG----T--T--B--SEEEEE-SGGG------HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhh----c--Ccccc-ceEEEEecccCCC----HHHHHHHHc
Confidence 000000 0000000111222223334555543222 1 11222 3799999999976 788999999
Q ss_pred hcCCCCceEEecCC
Q 010649 273 QIRPDRQTLYWSAT 286 (505)
Q Consensus 273 ~~~~~~~~v~~SAT 286 (505)
.+..+.+++++--.
T Consensus 142 R~g~~skii~~GD~ 155 (205)
T PF02562_consen 142 RIGEGSKIIITGDP 155 (205)
T ss_dssp TB-TT-EEEEEE--
T ss_pred ccCCCcEEEEecCc
Confidence 99888888876543
No 181
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.48 E-value=5.3e-07 Score=79.38 Aligned_cols=106 Identities=20% Similarity=0.284 Sum_probs=73.3
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhCCC--CeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc--cccccCCCCC--CCEEE
Q 010649 344 GSRILIFMDTKKGCDQITRQLRMDGW--PALSIHGDKSQAERDWVLSEFKAGKSPIMTATD--VAARGLDVKD--VKYVI 417 (505)
Q Consensus 344 ~~~vlVF~~~~~~~~~l~~~L~~~~~--~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~--~~~~Gidi~~--~~~Vi 417 (505)
.+.+|||+++.+..+.+.+.++.... ...++.. +..++..+++.|++++-.||+++. .+.+|||+|+ ++.||
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vi 86 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVI 86 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheee
Confidence 36899999999999999999987532 1122222 355788899999999999999998 9999999997 77899
Q ss_pred EcCCCC----C--------------------------hhHHHHhhcccccCCCccEEEEEecCc
Q 010649 418 NYDFPG----S--------------------------LEDYVHRIGRTGRAGAKGTAYTFFTAA 451 (505)
Q Consensus 418 ~~~~p~----s--------------------------~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 451 (505)
...+|. + .....|.+||+-|..++--++++++..
T Consensus 87 i~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 87 IVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp EES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 888874 1 123458899999997765555555553
No 182
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.45 E-value=4e-05 Score=81.62 Aligned_cols=68 Identities=21% Similarity=0.181 Sum_probs=54.4
Q ss_pred CCCcHHHHHHHHHHhcC-CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010649 120 FEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~-~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 195 (505)
..+++.|.+|+..++.. ..+++.+|+|+|||.+.. .++.++... +++||+++||..-+.++.+.+...
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~-~ii~~~~~~-------g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLV-ELIRQLVKR-------GLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHH-HHHHHHHHc-------CCCEEEEcCcHHHHHHHHHHHHhC
Confidence 46799999999999876 568899999999997643 345555442 567999999999999998888763
No 183
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.41 E-value=6.3e-06 Score=83.51 Aligned_cols=84 Identities=21% Similarity=0.215 Sum_probs=66.5
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHH
Q 010649 113 EISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 192 (505)
Q Consensus 113 ~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 192 (505)
.+...++.+|+.-|..|+.++|+..-.||++|+|+|||.+-. .++.|+..+ ....||+++|+..-+.|+++.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa-~IVyhl~~~------~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ------HAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhH-HHHHHHHHh------cCCceEEEcccchhHHHHHHHH
Confidence 455567788999999999999998889999999999998744 355666554 2455999999999999999988
Q ss_pred HHhcCCCCceEEEEE
Q 010649 193 TKFGASSKIKSTCIY 207 (505)
Q Consensus 193 ~~~~~~~~i~~~~~~ 207 (505)
.+-+ ++|+-+.
T Consensus 475 h~tg----LKVvRl~ 485 (935)
T KOG1802|consen 475 HKTG----LKVVRLC 485 (935)
T ss_pred HhcC----ceEeeee
Confidence 8764 5555443
No 184
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.36 E-value=8.2e-06 Score=73.90 Aligned_cols=152 Identities=21% Similarity=0.331 Sum_probs=98.1
Q ss_pred CCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc---CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEE
Q 010649 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALK---GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIV 175 (505)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~---~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~v 175 (505)
..|+....|++++-.+.. -.-+||.|.+....+.+ +.+.+.+.-||.|||.+ ++|++..+..+. ..-|
T Consensus 3 ~~w~p~~~P~wLl~E~e~--~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg------~~Lv 73 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIES--NILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG------SRLV 73 (229)
T ss_pred CCCCchhChHHHHHHHHc--CceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC------CcEE
Confidence 356666778888766643 24789999999988875 57899999999999987 889998888742 3456
Q ss_pred EEEcccHHHHHHHHHHHHHh-cCCCCceEE--EEECCCCchH----HH----HHHhcCCcEEEeChHHHHHHHHc-----
Q 010649 176 LVLAPTRELAVQIQQESTKF-GASSKIKST--CIYGGVPKGP----QV----RDLQKGVEIVIATPGRLIDMLES----- 239 (505)
Q Consensus 176 lil~Pt~~La~Q~~~~~~~~-~~~~~i~~~--~~~gg~~~~~----~~----~~~~~~~~Iiv~T~~~l~~~l~~----- 239 (505)
.+++|. +|..|..+.+..- +.-.+-++. .+.-...... .+ +.......|+++||+.+..+.-.
T Consensus 74 rviVpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l 152 (229)
T PF12340_consen 74 RVIVPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERL 152 (229)
T ss_pred EEEcCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHH
Confidence 777775 7999998888753 322222222 2222222211 11 22334567999999987664321
Q ss_pred --cCC-----------ccCCccEEEEcCcchhhc
Q 010649 240 --HNT-----------NLRRVTYLVLDEADRMLD 260 (505)
Q Consensus 240 --~~~-----------~l~~~~~lVlDEah~~~~ 260 (505)
... .+.....=|+||+|.++.
T Consensus 153 ~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 153 QDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 110 122334578999997664
No 185
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.36 E-value=3.3e-05 Score=76.83 Aligned_cols=108 Identities=19% Similarity=0.267 Sum_probs=69.5
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHH
Q 010649 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~ 217 (505)
-++|.+..|||||++++- ++..+. ....+..++++++...|...+.+.+.+-...
T Consensus 3 v~~I~G~aGTGKTvla~~-l~~~l~-----~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~------------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALN-LAKELQ-----NSEEGKKVLYLCGNHPLRNKLREQLAKKYNP------------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHH-HHHHhh-----ccccCCceEEEEecchHHHHHHHHHhhhccc-------------------
Confidence 478899999999998554 444441 1123667999999999998888777664300
Q ss_pred HHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCC-------CHHHHHHHHHh
Q 010649 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-------FEPQIKKILSQ 273 (505)
Q Consensus 218 ~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~-------~~~~~~~il~~ 273 (505)
......+..+..+...+.........+++|||||||++.+.. ...++..++..
T Consensus 58 ---~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 ---KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred ---chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 011233344444444333223445689999999999998731 24667777665
No 186
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.24 E-value=5.7e-06 Score=83.39 Aligned_cols=65 Identities=28% Similarity=0.283 Sum_probs=53.1
Q ss_pred CCcHHHHHHHHHHhcCCc-EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 010649 121 EPTPIQAQGWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 193 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~-~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~ 193 (505)
.+.+-|.+|+.++...++ .++.+|+|+|||.+... ++.++..+ +.++||++||.+-+..+.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvE-iI~qlvk~-------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVE-IISQLVKQ-------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHH-HHHHHHHc-------CCeEEEEcCchHHHHHHHHHhc
Confidence 578889999999988765 78889999999988554 55665553 7889999999999888888644
No 187
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.23 E-value=1.6e-05 Score=83.50 Aligned_cols=143 Identities=20% Similarity=0.207 Sum_probs=89.8
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCce
Q 010649 123 TPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIK 202 (505)
Q Consensus 123 ~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~ 202 (505)
.++|+.|+..++.++-+++.+++|+|||.+ +..++..+..... .....++++++||---|..+.+.+..........
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~-v~~ll~~l~~~~~--~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~ 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTT-VARLLLALVKQSP--KQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHH-HHHHHHHHHHhcc--ccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc
Confidence 379999999999999999999999999986 3334444433210 0113579999999888877777665533221100
Q ss_pred EEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHc------cCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCC
Q 010649 203 STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES------HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRP 276 (505)
Q Consensus 203 ~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~------~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~ 276 (505)
. .......+-..|..+|+..... ...+...+++||||||-.+. ...+..+++.+++
T Consensus 224 -----------~---~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~ 285 (586)
T TIGR01447 224 -----------E---ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPP 285 (586)
T ss_pred -----------h---hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCC
Confidence 0 0011112224454444332111 11223468999999999765 5677888888888
Q ss_pred CCceEEecCC
Q 010649 277 DRQTLYWSAT 286 (505)
Q Consensus 277 ~~~~v~~SAT 286 (505)
..++|++--.
T Consensus 286 ~~rlIlvGD~ 295 (586)
T TIGR01447 286 NTKLILLGDK 295 (586)
T ss_pred CCEEEEECCh
Confidence 8888877543
No 188
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.23 E-value=1.3e-05 Score=84.45 Aligned_cols=143 Identities=19% Similarity=0.213 Sum_probs=89.8
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCc
Q 010649 122 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 201 (505)
Q Consensus 122 ~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i 201 (505)
..++|++|+..++..+-+++.+++|+|||.+. ..++..+.... ......+++++||..-|..+.+.+........+
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~---~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQLA---DGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhc---CCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 35899999999999888999999999999763 23444443311 112457999999998888888776553322111
Q ss_pred eEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHH------ccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcC
Q 010649 202 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLE------SHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR 275 (505)
Q Consensus 202 ~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~------~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~ 275 (505)
. .. .......-..|..+|+.... ....+.-.+++|||||+-.+- ...+..++..++
T Consensus 229 ~-----------~~---~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~ 290 (615)
T PRK10875 229 T-----------DE---QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALP 290 (615)
T ss_pred c-----------hh---hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcc
Confidence 0 00 00111112334333332211 111233456899999999664 667778888898
Q ss_pred CCCceEEecCC
Q 010649 276 PDRQTLYWSAT 286 (505)
Q Consensus 276 ~~~~~v~~SAT 286 (505)
+..++|++--.
T Consensus 291 ~~~rlIlvGD~ 301 (615)
T PRK10875 291 PHARVIFLGDR 301 (615)
T ss_pred cCCEEEEecch
Confidence 88888887644
No 189
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.20 E-value=2.1e-05 Score=85.11 Aligned_cols=133 Identities=20% Similarity=0.127 Sum_probs=83.4
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHH
Q 010649 113 EISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 192 (505)
Q Consensus 113 ~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 192 (505)
.+.+..-..+++.|.+|+..+..++-+++.++.|+|||.+. -.++..+.... ....+++++||-.-|..+.+..
T Consensus 315 ~~~~~~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~-----~~~~v~l~ApTg~AA~~L~e~~ 388 (720)
T TIGR01448 315 EVEKKLRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELG-----GLLPVGLAAPTGRAAKRLGEVT 388 (720)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcC-----CCceEEEEeCchHHHHHHHHhc
Confidence 33333345899999999999998888999999999999763 33444443320 1156889999987766444322
Q ss_pred HHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHc-----cCCccCCccEEEEcCcchhhcCCCHHHH
Q 010649 193 TKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-----HNTNLRRVTYLVLDEADRMLDMGFEPQI 267 (505)
Q Consensus 193 ~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~-----~~~~l~~~~~lVlDEah~~~~~~~~~~~ 267 (505)
. .. -.|..+++..... ........++||+|||+.+. ...+
T Consensus 389 g-------~~------------------------a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~ 433 (720)
T TIGR01448 389 G-------LT------------------------ASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLA 433 (720)
T ss_pred C-------Cc------------------------cccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHH
Confidence 1 00 0111111111000 01112457899999999775 4566
Q ss_pred HHHHHhcCCCCceEEecCC
Q 010649 268 KKILSQIRPDRQTLYWSAT 286 (505)
Q Consensus 268 ~~il~~~~~~~~~v~~SAT 286 (505)
..++..++...++|++--+
T Consensus 434 ~~Ll~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 434 LSLLAALPDHARLLLVGDT 452 (720)
T ss_pred HHHHHhCCCCCEEEEECcc
Confidence 7777888888888876544
No 190
>PRK10536 hypothetical protein; Provisional
Probab=98.19 E-value=4.5e-05 Score=70.52 Aligned_cols=143 Identities=15% Similarity=0.117 Sum_probs=82.9
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHH---------
Q 010649 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ--------- 187 (505)
Q Consensus 117 ~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q--------- 187 (505)
.++...+..|...+.++.+...+++.+|+|+|||+.++..++..+... .-.+++|.=|+.+..+.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~------~~~kIiI~RP~v~~ge~LGfLPG~~~ 128 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK------DVDRIIVTRPVLQADEDLGFLPGDIA 128 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC------CeeEEEEeCCCCCchhhhCcCCCCHH
Confidence 445567889999999998888899999999999998877666665442 13456666665432211
Q ss_pred --HHHHHHHhcCCCCceEEEEECCCCchHHHHHH-h-cCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCC
Q 010649 188 --IQQESTKFGASSKIKSTCIYGGVPKGPQVRDL-Q-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF 263 (505)
Q Consensus 188 --~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~-~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~ 263 (505)
+.-.+.-+...... +.+. .....+ . ....|-|.... ++.... + +-++||+|||+.+.
T Consensus 129 eK~~p~~~pi~D~L~~----~~~~----~~~~~~~~~~~~~Iei~~l~----ymRGrt--l-~~~~vIvDEaqn~~---- 189 (262)
T PRK10536 129 EKFAPYFRPVYDVLVR----RLGA----SFMQYCLRPEIGKVEIAPFA----YMRGRT--F-ENAVVILDEAQNVT---- 189 (262)
T ss_pred HHHHHHHHHHHHHHHH----HhCh----HHHHHHHHhccCcEEEecHH----HhcCCc--c-cCCEEEEechhcCC----
Confidence 11111111000000 0010 111111 1 12234555432 222211 2 34799999999876
Q ss_pred HHHHHHHHHhcCCCCceEEec
Q 010649 264 EPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 264 ~~~~~~il~~~~~~~~~v~~S 284 (505)
..++..++..+..+.++|+.-
T Consensus 190 ~~~~k~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 190 AAQMKMFLTRLGENVTVIVNG 210 (262)
T ss_pred HHHHHHHHhhcCCCCEEEEeC
Confidence 578889999988888777643
No 191
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.03 E-value=3.8e-05 Score=80.68 Aligned_cols=80 Identities=24% Similarity=0.330 Sum_probs=55.2
Q ss_pred CCCcHHHHHHHHHHhc----CCcEEEEccCCCchHHHHHHHHHH---HHhcC-----------------CCC--------
Q 010649 120 FEPTPIQAQGWPMALK----GRDLIGIAETGSGKTLAYLLPAIV---HVNAQ-----------------PFL-------- 167 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~----~~~~li~a~TGsGKT~~~~~~~l~---~l~~~-----------------~~~-------- 167 (505)
++|+|.|...+..++. ..+.++..|||+|||++.+-..+. ++... +..
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e 99 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEE 99 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhh
Confidence 3789999888776654 568999999999999875543333 22210 000
Q ss_pred --CC----CCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 010649 168 --AP----GDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (505)
Q Consensus 168 --~~----~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~ 199 (505)
.. -..|++.+-+-|..-..|+.+++++.....
T Consensus 100 ~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~v 137 (945)
T KOG1132|consen 100 AGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRV 137 (945)
T ss_pred hcCccccccCCceEEEecchHHHHHHHHHHHhhcCCCC
Confidence 00 114778888889888999999999876553
No 192
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.93 E-value=0.00017 Score=78.34 Aligned_cols=122 Identities=20% Similarity=0.160 Sum_probs=76.0
Q ss_pred CCCcHHHHHHHHHHhcC-CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 010649 120 FEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~-~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~ 198 (505)
..+++-|.+|+..++.+ +-+++.++.|+|||.+ +-.+...+.. .+..+++++||---|..+.+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~~~~-------~g~~V~~~ApTg~Aa~~L~~~------- 415 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREAWEA-------AGYRVIGAALSGKAAEGLQAE------- 415 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHHHHh-------CCCeEEEEeCcHHHHHHHHhc-------
Confidence 46899999999998874 5579999999999975 3334444333 267799999997655444321
Q ss_pred CCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhc-CCC
Q 010649 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPD 277 (505)
Q Consensus 199 ~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~-~~~ 277 (505)
.++. -.|..++...+......+...++||||||-.+.. ..+..++... ...
T Consensus 416 ~g~~------------------------a~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~----~~~~~Ll~~~~~~~ 467 (744)
T TIGR02768 416 SGIE------------------------SRTLASLEYAWANGRDLLSDKDVLVIDEAGMVGS----RQMARVLKEAEEAG 467 (744)
T ss_pred cCCc------------------------eeeHHHHHhhhccCcccCCCCcEEEEECcccCCH----HHHHHHHHHHHhcC
Confidence 1111 1122233222222333456789999999997753 3444555533 345
Q ss_pred CceEEec
Q 010649 278 RQTLYWS 284 (505)
Q Consensus 278 ~~~v~~S 284 (505)
.++|++-
T Consensus 468 ~kliLVG 474 (744)
T TIGR02768 468 AKVVLVG 474 (744)
T ss_pred CEEEEEC
Confidence 6666665
No 193
>PF13245 AAA_19: Part of AAA domain
Probab=97.91 E-value=6e-05 Score=56.44 Aligned_cols=60 Identities=33% Similarity=0.362 Sum_probs=40.1
Q ss_pred HHHHHhcCC-cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHH
Q 010649 129 GWPMALKGR-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 192 (505)
Q Consensus 129 ~i~~~l~~~-~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 192 (505)
++...+.+. -+++.+|+|||||.+.+- ++..+.... ... +.++|+++|++..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~-~i~~l~~~~--~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAA-RIAELLAAR--ADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHH-HHHHHHHHh--cCC-CCeEEEECCCHHHHHHHHHHH
Confidence 444334433 466699999999976444 344443210 112 567999999999999888887
No 194
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.91 E-value=0.00012 Score=80.63 Aligned_cols=124 Identities=23% Similarity=0.150 Sum_probs=78.7
Q ss_pred CCCcHHHHHHHHHHhcCCc-EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 010649 120 FEPTPIQAQGWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~-~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~ 198 (505)
..|++-|.+++..++.+++ +++.+..|+|||++ +-.+...+.. .+.+|+.++||---|..+.+ .
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~-------~G~~V~~~ApTGkAA~~L~e-------~ 409 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA-------AGYEVRGAALSGIAAENLEG-------G 409 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH-------cCCeEEEecCcHHHHHHHhh-------c
Confidence 4799999999999998654 78899999999986 4434444333 26779999999755543322 1
Q ss_pred CCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhc-CCC
Q 010649 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPD 277 (505)
Q Consensus 199 ~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~-~~~ 277 (505)
.++. -.|..+|..-.......+...++|||||+-.+. ...+..++... +..
T Consensus 410 tGi~------------------------a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~----~~~m~~LL~~a~~~g 461 (988)
T PRK13889 410 SGIA------------------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG----TRQLERVLSHAADAG 461 (988)
T ss_pred cCcc------------------------hhhHHHHHhhhcccccccccCcEEEEECcccCC----HHHHHHHHHhhhhCC
Confidence 1111 123333322222233446678899999999765 34555666544 456
Q ss_pred CceEEecCC
Q 010649 278 RQTLYWSAT 286 (505)
Q Consensus 278 ~~~v~~SAT 286 (505)
.++|++--+
T Consensus 462 arvVLVGD~ 470 (988)
T PRK13889 462 AKVVLVGDP 470 (988)
T ss_pred CEEEEECCH
Confidence 677776544
No 195
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.84 E-value=0.00013 Score=73.52 Aligned_cols=137 Identities=20% Similarity=0.165 Sum_probs=72.7
Q ss_pred EEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH-----hcCCCCceEEEEECCCCch--
Q 010649 141 GIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-----FGASSKIKSTCIYGGVPKG-- 213 (505)
Q Consensus 141 i~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~-----~~~~~~i~~~~~~gg~~~~-- 213 (505)
..++||||||++....++..... . ....|+.|....+.+....-+.. +.-.. ...+++....
T Consensus 2 f~matgsgkt~~ma~lil~~y~k-g------yr~flffvnq~nilekt~~nftd~~s~kylf~e----~i~~~d~~i~ik 70 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK-G------YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSE----NININDENIEIK 70 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh-c------hhhEEEEecchhHHHHHHhhcccchhhhHhhhh----hhhcCCceeeee
Confidence 35789999999855544444333 1 33477777766665544332221 11000 1111111110
Q ss_pred --HHHHHHhcCCcEEEeChHHHHHHHHccCC------ccCCccE-EEEcCcchhhcCC-------------CHHHHHHHH
Q 010649 214 --PQVRDLQKGVEIVIATPGRLIDMLESHNT------NLRRVTY-LVLDEADRMLDMG-------------FEPQIKKIL 271 (505)
Q Consensus 214 --~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~------~l~~~~~-lVlDEah~~~~~~-------------~~~~~~~il 271 (505)
........+..|+++|.+.|...+.+.+- ++.+..+ ++-||||++-... +...+...+
T Consensus 71 kvn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~ 150 (812)
T COG3421 71 KVNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLAL 150 (812)
T ss_pred eecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHH
Confidence 01111345578999999999877655322 2344444 5569999985321 222222222
Q ss_pred HhcCCCCceEEecCCChH
Q 010649 272 SQIRPDRQTLYWSATWPK 289 (505)
Q Consensus 272 ~~~~~~~~~v~~SAT~~~ 289 (505)
. -.++.-++.+|||.|.
T Consensus 151 ~-~nkd~~~lef~at~~k 167 (812)
T COG3421 151 E-QNKDNLLLEFSATIPK 167 (812)
T ss_pred h-cCCCceeehhhhcCCc
Confidence 2 2356677889999984
No 196
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.80 E-value=2.8e-06 Score=88.56 Aligned_cols=79 Identities=27% Similarity=0.383 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhc---CCCcEEEEccc
Q 010649 328 SQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA---GKSPIMTATDV 403 (505)
Q Consensus 328 ~~k~~~l~~~l~~~~-~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~---g~~~vLVaT~~ 403 (505)
..|...|...++... .+++|+||..-....+.+.+++...+ ....+.|.....+|+.++++|.. ....+|.+|.+
T Consensus 614 ~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra 692 (696)
T KOG0383|consen 614 SGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRA 692 (696)
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeeccc
Confidence 456666666666654 45699999999999999999999988 88999999999999999999993 36678999987
Q ss_pred cccc
Q 010649 404 AARG 407 (505)
Q Consensus 404 ~~~G 407 (505)
.+.|
T Consensus 693 ~g~g 696 (696)
T KOG0383|consen 693 GGLG 696 (696)
T ss_pred ccCC
Confidence 6554
No 197
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.79 E-value=0.00016 Score=76.85 Aligned_cols=139 Identities=21% Similarity=0.134 Sum_probs=88.2
Q ss_pred cCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCc-EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc
Q 010649 102 RDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (505)
Q Consensus 102 ~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~-~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P 180 (505)
....+.+++.+. -+..|+.-|++|+..++..+| .+|.+=+|+|||.+... ++.-+.. .+++||+.+=
T Consensus 654 ~~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~-LIkiL~~-------~gkkVLLtsy 721 (1100)
T KOG1805|consen 654 LSKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISL-LIKILVA-------LGKKVLLTSY 721 (1100)
T ss_pred cccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHH-HHHHHHH-------cCCeEEEEeh
Confidence 334456666553 234689999999999988776 78889999999986332 3444333 2788999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEEEECCCCchH-----------------HHHHHhcCCcEEEeChHHHHHHHHccCCc
Q 010649 181 TRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP-----------------QVRDLQKGVEIVIATPGRLIDMLESHNTN 243 (505)
Q Consensus 181 t~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~-----------------~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~ 243 (505)
|..-+..+.-.++.+... ..-+-......+ ....+-+...||.||-=-+.+. -+.
T Consensus 722 ThsAVDNILiKL~~~~i~----~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~p----lf~ 793 (1100)
T KOG1805|consen 722 THSAVDNILIKLKGFGIY----ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHP----LFV 793 (1100)
T ss_pred hhHHHHHHHHHHhccCcc----eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCch----hhh
Confidence 998888887777776422 211111111111 2223334567887774333222 233
Q ss_pred cCCccEEEEcCcchhhc
Q 010649 244 LRRVTYLVLDEADRMLD 260 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~ 260 (505)
.+.|+++|+|||-.+..
T Consensus 794 ~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 794 NRQFDYCIIDEASQILL 810 (1100)
T ss_pred ccccCEEEEcccccccc
Confidence 56799999999997653
No 198
>PRK04296 thymidine kinase; Provisional
Probab=97.78 E-value=6.5e-05 Score=67.62 Aligned_cols=108 Identities=16% Similarity=0.175 Sum_probs=57.4
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEccc---HHHHHHHHHHHHHhcCCCCceEEEEECCCCchH
Q 010649 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT---RELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt---~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 214 (505)
-.++.+|+|+|||..++- ++..+.. .+.+++++-|. +.... .+....++...
T Consensus 4 i~litG~~GsGKTT~~l~-~~~~~~~-------~g~~v~i~k~~~d~~~~~~-------~i~~~lg~~~~---------- 58 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQ-RAYNYEE-------RGMKVLVFKPAIDDRYGEG-------KVVSRIGLSRE---------- 58 (190)
T ss_pred EEEEECCCCCHHHHHHHH-HHHHHHH-------cCCeEEEEeccccccccCC-------cEecCCCCccc----------
Confidence 468899999999987554 3333332 16678888663 21111 11111111100
Q ss_pred HHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCC
Q 010649 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (505)
Q Consensus 215 ~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT 286 (505)
.+.+..+..+.+.+.. .-.++++|||||+|.+. ..++..++..+.+.-..+.+++-
T Consensus 59 ---------~~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 59 ---------AIPVSSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred ---------ceEeCChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEec
Confidence 1223444555555443 23467899999998753 34456666664444444444443
No 199
>PRK06526 transposase; Provisional
Probab=97.75 E-value=0.00013 Score=68.62 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=61.5
Q ss_pred HHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCC
Q 010649 131 PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGV 210 (505)
Q Consensus 131 ~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~ 210 (505)
.++..+.++++++|+|+|||..+.. +...+... +.+|+++..+ +|..+.....
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~a-l~~~a~~~-------g~~v~f~t~~-~l~~~l~~~~------------------ 145 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIG-LGIRACQA-------GHRVLFATAA-QWVARLAAAH------------------ 145 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHH-HHHHHHHC-------CCchhhhhHH-HHHHHHHHHH------------------
Confidence 4455678999999999999987554 33333321 4456664433 3444332110
Q ss_pred CchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCC-HHHHHHHHHhcCCCCceEEecCCChH
Q 010649 211 PKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF-EPQIKKILSQIRPDRQTLYWSATWPK 289 (505)
Q Consensus 211 ~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~-~~~~~~il~~~~~~~~~v~~SAT~~~ 289 (505)
.. .+.. ..+. .+.++++|||||+|....... ...+..++........+|+.|...+.
T Consensus 146 ---------~~------~~~~---~~l~----~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~ 203 (254)
T PRK06526 146 ---------HA------GRLQ---AELV----KLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFG 203 (254)
T ss_pred ---------hc------CcHH---HHHH----HhccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHH
Confidence 00 0111 1111 134578999999997643221 23345555544344567877777655
Q ss_pred HH
Q 010649 290 EV 291 (505)
Q Consensus 290 ~~ 291 (505)
..
T Consensus 204 ~w 205 (254)
T PRK06526 204 RW 205 (254)
T ss_pred HH
Confidence 43
No 200
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.68 E-value=0.00089 Score=74.53 Aligned_cols=124 Identities=19% Similarity=0.109 Sum_probs=79.0
Q ss_pred CCCcHHHHHHHHHHhc-CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 010649 120 FEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~-~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~ 198 (505)
..|++-|.+++..+.. ++-+++.++.|+|||.+ +-++...+.. .+..|+.++||-.-|..+.+..
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~-------~G~~V~g~ApTgkAA~~L~e~~------ 445 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEA-------AGYRVVGGALAGKAAEGLEKEA------ 445 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHH-------cCCeEEEEcCcHHHHHHHHHhh------
Confidence 4799999999998865 44588999999999976 4444444433 2677999999976654443221
Q ss_pred CCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcC-CC
Q 010649 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR-PD 277 (505)
Q Consensus 199 ~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~-~~ 277 (505)
++. -.|..+|+.........+..-++||||||..+. ..++..++.... ..
T Consensus 446 -Gi~------------------------a~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~----~~~m~~Ll~~~~~~g 496 (1102)
T PRK13826 446 -GIQ------------------------SRTLSSWELRWNQGRDQLDNKTVFVLDEAGMVA----SRQMALFVEAVTRAG 496 (1102)
T ss_pred -CCC------------------------eeeHHHHHhhhccCccCCCCCcEEEEECcccCC----HHHHHHHHHHHHhcC
Confidence 111 122222211111223345667899999999765 455666666664 56
Q ss_pred CceEEecCC
Q 010649 278 RQTLYWSAT 286 (505)
Q Consensus 278 ~~~v~~SAT 286 (505)
.++|++--+
T Consensus 497 arvVLVGD~ 505 (1102)
T PRK13826 497 AKLVLVGDP 505 (1102)
T ss_pred CEEEEECCH
Confidence 777776644
No 201
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.66 E-value=0.0029 Score=75.58 Aligned_cols=236 Identities=12% Similarity=0.165 Sum_probs=128.0
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 010649 121 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~~--~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~ 198 (505)
.+++-|.+++..++.. +-.++.++.|+|||.+ +-.++..+.. .+..|++++||-.-+.++.+........
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~-------~G~~V~~lAPTgrAA~~L~e~~g~~A~T 500 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASE-------QGYEIQIITAGSLSAQELRQKIPRLAST 500 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHh-------cCCeEEEEeCCHHHHHHHHHHhcchhhh
Confidence 6889999999998875 4588999999999976 3334444333 2678999999987666555442211100
Q ss_pred CCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhc-CCC
Q 010649 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPD 277 (505)
Q Consensus 199 ~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~-~~~ 277 (505)
.......+.. .....|...|. .....+...++||||||-.+. ...+..++... +.+
T Consensus 501 -------------i~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~g 557 (1960)
T TIGR02760 501 -------------FITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHN 557 (1960)
T ss_pred -------------HHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcC
Confidence 0011111111 11122333332 223345677899999999765 55667777655 467
Q ss_pred CceEEecCC--ChH----HHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhhc-CCCeEEEE
Q 010649 278 RQTLYWSAT--WPK----EVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM-DGSRILIF 350 (505)
Q Consensus 278 ~~~v~~SAT--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~vlVF 350 (505)
.++|++--+ ++. .+..++..... +. +...... .....+ .+.......+...+.+.+.... ...+++|+
T Consensus 558 arvVlvGD~~QL~sV~aG~~f~~L~~~gv-~t-~~l~~i~-rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tliv 632 (1960)
T TIGR02760 558 SKLILLNDSAQRQGMSAGSAIDLLKEGGV-TT-YAWVDTK-QQKASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQVL 632 (1960)
T ss_pred CEEEEEcChhhcCccccchHHHHHHHCCC-cE-EEeeccc-ccCcce--eeeccCchHHHHHHHHHHHhcccccCceEEE
Confidence 888887655 111 22233332211 11 1111100 001111 1222233444555655555544 33469999
Q ss_pred eCCcccHHHHHHHHHh----CC------CCeEEEc-CCCCHHHHHHHHHHHhcC
Q 010649 351 MDTKKGCDQITRQLRM----DG------WPALSIH-GDKSQAERDWVLSEFKAG 393 (505)
Q Consensus 351 ~~~~~~~~~l~~~L~~----~~------~~~~~lh-g~~~~~~r~~~~~~f~~g 393 (505)
..+.+....|...++. .| .....+. ..++..++... ..|+.|
T Consensus 633 ~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~G 685 (1960)
T TIGR02760 633 ATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQG 685 (1960)
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCC
Confidence 9998888888777654 22 2222332 35666666633 555554
No 202
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.60 E-value=0.0005 Score=58.32 Aligned_cols=74 Identities=18% Similarity=0.218 Sum_probs=52.4
Q ss_pred CCCCHHHHHHHHHHHhcCC-CcEEEEcccccccCCCCC--CCEEEEcCCCC-----------------------------
Q 010649 376 GDKSQAERDWVLSEFKAGK-SPIMTATDVAARGLDVKD--VKYVINYDFPG----------------------------- 423 (505)
Q Consensus 376 g~~~~~~r~~~~~~f~~g~-~~vLVaT~~~~~Gidi~~--~~~Vi~~~~p~----------------------------- 423 (505)
-..+..+...+++.|+... ..||+++.-+.+|||+|+ ++.||...+|.
T Consensus 29 e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 108 (141)
T smart00492 29 QGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSL 108 (141)
T ss_pred eCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHH
Confidence 3344556788899998654 369999977999999998 56788777663
Q ss_pred --ChhHHHHhhcccccCCCccEEEEEec
Q 010649 424 --SLEDYVHRIGRTGRAGAKGTAYTFFT 449 (505)
Q Consensus 424 --s~~~~~Qr~GR~~R~g~~g~~~~~~~ 449 (505)
......|.+||+-|...+--++++++
T Consensus 109 ~~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 109 PDAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred HHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 12334688999999866544454443
No 203
>PRK08181 transposase; Validated
Probab=97.59 E-value=0.001 Score=62.88 Aligned_cols=120 Identities=18% Similarity=0.136 Sum_probs=67.0
Q ss_pred cHHHHHHH----HHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 010649 123 TPIQAQGW----PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (505)
Q Consensus 123 ~~~Q~~~i----~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~ 198 (505)
.+.|..++ .++..++++++++|+|+|||..+.. +...+..+ +..|+++. ..+|..++......
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~A-ia~~a~~~-------g~~v~f~~-~~~L~~~l~~a~~~---- 155 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAA-IGLALIEN-------GWRVLFTR-TTDLVQKLQVARRE---- 155 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHH-HHHHHHHc-------CCceeeee-HHHHHHHHHHHHhC----
Confidence 44454444 2445678999999999999976443 33333332 44565554 44665554322100
Q ss_pred CCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCC-HHHHHHHHHhcCCC
Q 010649 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF-EPQIKKILSQIRPD 277 (505)
Q Consensus 199 ~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~-~~~~~~il~~~~~~ 277 (505)
.+.+.++.. +.++++|||||.+.+....+ ...+..++......
T Consensus 156 -----------------------------~~~~~~l~~-------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~ 199 (269)
T PRK08181 156 -----------------------------LQLESAIAK-------LDKFDLLILDDLAYVTKDQAETSVLFELISARYER 199 (269)
T ss_pred -----------------------------CcHHHHHHH-------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhC
Confidence 111122222 34678999999997654322 23455666554444
Q ss_pred CceEEecCCChHHH
Q 010649 278 RQTLYWSATWPKEV 291 (505)
Q Consensus 278 ~~~v~~SAT~~~~~ 291 (505)
..+|+.|-..+.+.
T Consensus 200 ~s~IiTSN~~~~~w 213 (269)
T PRK08181 200 RSILITANQPFGEW 213 (269)
T ss_pred CCEEEEcCCCHHHH
Confidence 56676666655543
No 204
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.55 E-value=0.00074 Score=64.63 Aligned_cols=143 Identities=19% Similarity=0.279 Sum_probs=87.0
Q ss_pred cCCCCCcHHHHHHHHHHhcCCc--EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 010649 117 AGFFEPTPIQAQGWPMALKGRD--LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (505)
Q Consensus 117 ~~~~~~~~~Q~~~i~~~l~~~~--~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~ 194 (505)
.|+......|.-|+..++.-.- +.+.++.|||||+.++.+.+.+...++. ..+++|.=|+..+-+.+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~-----y~KiiVtRp~vpvG~dI------ 292 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR-----YRKIIVTRPTVPVGEDI------ 292 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh-----hceEEEecCCcCccccc------
Confidence 4666667789999998886543 7778999999999999999988887542 45578777775553221
Q ss_pred hcCCCCceEEEEECCCCc---hHHHHHHhcCCcEEE----eChHHHHHHHHccCCccCC----------ccEEEEcCcch
Q 010649 195 FGASSKIKSTCIYGGVPK---GPQVRDLQKGVEIVI----ATPGRLIDMLESHNTNLRR----------VTYLVLDEADR 257 (505)
Q Consensus 195 ~~~~~~i~~~~~~gg~~~---~~~~~~~~~~~~Iiv----~T~~~l~~~l~~~~~~l~~----------~~~lVlDEah~ 257 (505)
+ +..|... .+++..+...-.+++ ++.+.+...+......+.. =.+||+|||+.
T Consensus 293 -G---------fLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQN 362 (436)
T COG1875 293 -G---------FLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQN 362 (436)
T ss_pred -C---------cCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhc
Confidence 1 0011100 011111111111111 2233444444333222111 15899999998
Q ss_pred hhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 258 MLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 258 ~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
+- ..+++.|+...-+..++|++.
T Consensus 363 LT----pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 363 LT----PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred cC----HHHHHHHHHhccCCCEEEEcC
Confidence 75 788999999999888888754
No 205
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.54 E-value=0.00044 Score=58.78 Aligned_cols=68 Identities=22% Similarity=0.303 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCCC---cEEEEccc--ccccCCCCC--CCEEEEcCCCC----C--------------------------
Q 010649 382 ERDWVLSEFKAGKS---PIMTATDV--AARGLDVKD--VKYVINYDFPG----S-------------------------- 424 (505)
Q Consensus 382 ~r~~~~~~f~~g~~---~vLVaT~~--~~~Gidi~~--~~~Vi~~~~p~----s-------------------------- 424 (505)
+...+++.|++..- .||+++.- +++|||+|+ ++.||...+|. +
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFD 111 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 44678888886543 58988876 899999998 67888877764 1
Q ss_pred -hhHHHHhhcccccCCCccEEEEEec
Q 010649 425 -LEDYVHRIGRTGRAGAKGTAYTFFT 449 (505)
Q Consensus 425 -~~~~~Qr~GR~~R~g~~g~~~~~~~ 449 (505)
.....|.+||+-|..++--++++++
T Consensus 112 a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 112 AMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred HHHHHHHHhCccccCccceEEEEEEe
Confidence 1234589999999876644555554
No 206
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.51 E-value=0.00045 Score=64.89 Aligned_cols=83 Identities=23% Similarity=0.424 Sum_probs=65.0
Q ss_pred HHHHHHhcCCCcEEEEcccccccCCCCC--------CCEEEEcCCCCChhHHHHhhcccccCCCc-cEEEEEecCc---c
Q 010649 385 WVLSEFKAGKSPIMTATDVAARGLDVKD--------VKYVINYDFPGSLEDYVHRIGRTGRAGAK-GTAYTFFTAA---N 452 (505)
Q Consensus 385 ~~~~~f~~g~~~vLVaT~~~~~Gidi~~--------~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~-g~~~~~~~~~---~ 452 (505)
...+.|.+|+..|+|.++++++|+.+.+ -++-|.+.+|||....+|..||++|.+|. .-.|.++..+ +
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 4467899999999999999999999864 34677899999999999999999999985 4445555543 5
Q ss_pred HHHHHHHHHHHHHhC
Q 010649 453 ARFAKELITILEEAG 467 (505)
Q Consensus 453 ~~~~~~l~~~l~~~~ 467 (505)
.+++..+.+.|+..+
T Consensus 132 ~Rfas~va~rL~sLg 146 (278)
T PF13871_consen 132 RRFASTVARRLESLG 146 (278)
T ss_pred HHHHHHHHHHHhhcc
Confidence 666666666665543
No 207
>PRK14974 cell division protein FtsY; Provisional
Probab=97.50 E-value=0.0012 Score=64.41 Aligned_cols=130 Identities=21% Similarity=0.280 Sum_probs=76.8
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEccc---HHHHHHHHHHHHHhcCCCCceEEEEECCCCchH
Q 010649 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT---RELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt---~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 214 (505)
-+++.+++|+|||.+..- +...+... +.+++++... ..-..|+......++ +.+.....+.
T Consensus 142 vi~~~G~~GvGKTTtiak-LA~~l~~~-------g~~V~li~~Dt~R~~a~eqL~~~a~~lg----v~v~~~~~g~---- 205 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAK-LAYYLKKN-------GFSVVIAAGDTFRAGAIEQLEEHAERLG----VKVIKHKYGA---- 205 (336)
T ss_pred EEEEEcCCCCCHHHHHHH-HHHHHHHc-------CCeEEEecCCcCcHHHHHHHHHHHHHcC----CceecccCCC----
Confidence 478889999999986433 23333331 4456666543 344566655555543 3222111111
Q ss_pred HHHHHhcCCcEEEeChHH-HHHHHHccCCccCCccEEEEcCcchhhc-CCCHHHHHHHHHhcCCCCceEEecCCChHHHH
Q 010649 215 QVRDLQKGVEIVIATPGR-LIDMLESHNTNLRRVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVE 292 (505)
Q Consensus 215 ~~~~~~~~~~Iiv~T~~~-l~~~l~~~~~~l~~~~~lVlDEah~~~~-~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~ 292 (505)
.|.. +.+.+... ....+++|++|.+.++.. ......+.++.....++..++.++||...+..
T Consensus 206 --------------dp~~v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~ 269 (336)
T PRK14974 206 --------------DPAAVAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAV 269 (336)
T ss_pred --------------CHHHHHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHH
Confidence 1111 11222211 123567999999998863 33567778888888888889999999887776
Q ss_pred HHHHHHc
Q 010649 293 HLARQYL 299 (505)
Q Consensus 293 ~~~~~~~ 299 (505)
..++.|.
T Consensus 270 ~~a~~f~ 276 (336)
T PRK14974 270 EQAREFN 276 (336)
T ss_pred HHHHHHH
Confidence 6666664
No 208
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.49 E-value=0.00044 Score=58.03 Aligned_cols=20 Identities=35% Similarity=0.242 Sum_probs=13.4
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~ 155 (505)
++.+++.+++|+|||.+...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~ 23 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKR 23 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHH
Confidence 35689999999999986443
No 209
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.44 E-value=0.00047 Score=75.30 Aligned_cols=151 Identities=17% Similarity=0.086 Sum_probs=92.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCC----------CCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEE
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQP----------FLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTC 205 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~----------~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~ 205 (505)
|+++++...+|.|||..-+...+..+.... .........+|||||. ++..||.+++.+..... +++..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 467889999999999886554444321110 0011123458999997 78899999999987654 67666
Q ss_pred EECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccC--------------Cc----cCCcc--EEEEcCcchhhcCCCHH
Q 010649 206 IYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN--------------TN----LRRVT--YLVLDEADRMLDMGFEP 265 (505)
Q Consensus 206 ~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~--------------~~----l~~~~--~lVlDEah~~~~~~~~~ 265 (505)
+.|=...........-.+|||+|||..|...+.... .. |-.+. -|++|||+.+-.. ..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvess--sS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESS--SS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcch--HH
Confidence 665322211111222358999999999876654321 00 11111 2899999977653 45
Q ss_pred HHHHHHHhcCCCCceEEecCCChHHH
Q 010649 266 QIKKILSQIRPDRQTLYWSATWPKEV 291 (505)
Q Consensus 266 ~~~~il~~~~~~~~~v~~SAT~~~~~ 291 (505)
...+.+..+ +....-..|+|+-..+
T Consensus 530 ~~a~M~~rL-~~in~W~VTGTPiq~I 554 (1394)
T KOG0298|consen 530 AAAEMVRRL-HAINRWCVTGTPIQKI 554 (1394)
T ss_pred HHHHHHHHh-hhhceeeecCCchhhh
Confidence 555555555 3455677899964433
No 210
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.0038 Score=62.19 Aligned_cols=130 Identities=18% Similarity=0.167 Sum_probs=69.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEE-ccc-HHHHHHHHHHHHHhcCCCCceEEEEECCCCchH
Q 010649 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL-APT-RELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil-~Pt-~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 214 (505)
..+++++|||+|||.+..-.+ .++.... ...+.+|.++ +.+ |.-+. ++++.++...++.+.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA-~~~~~~~---~~~g~~V~lit~Dt~R~aa~---eQL~~~a~~lgvpv~---------- 237 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLA-AIYGINS---DDKSLNIKIITIDNYRIGAK---KQIQTYGDIMGIPVK---------- 237 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHHHhhh---ccCCCeEEEEeccCccHHHH---HHHHHHhhcCCcceE----------
Confidence 458889999999998754322 2222110 0113344443 333 23332 224444433333321
Q ss_pred HHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCC-CHHHHHHHHHhcCCC-CceEEecCCCh-HHH
Q 010649 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIRPD-RQTLYWSATWP-KEV 291 (505)
Q Consensus 215 ~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~-~~~~~~~il~~~~~~-~~~v~~SAT~~-~~~ 291 (505)
++-++..+...+.. +.++++||+|++.+..... ....+..++....+. ..++.+|||.. .++
T Consensus 238 -----------~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~ 302 (388)
T PRK12723 238 -----------AIESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDV 302 (388)
T ss_pred -----------eeCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHH
Confidence 12234444444433 3578999999999876321 224555566655433 46688899975 345
Q ss_pred HHHHHHH
Q 010649 292 EHLARQY 298 (505)
Q Consensus 292 ~~~~~~~ 298 (505)
.+....|
T Consensus 303 ~~~~~~~ 309 (388)
T PRK12723 303 KEIFHQF 309 (388)
T ss_pred HHHHHHh
Confidence 5555555
No 211
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.35 E-value=0.0023 Score=54.34 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=18.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHV 161 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l 161 (505)
++.+++.+|+|+|||..+.. +...+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~-i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARA-IANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHh
Confidence 56799999999999975333 44443
No 212
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.29 E-value=0.00077 Score=65.86 Aligned_cols=123 Identities=20% Similarity=0.082 Sum_probs=74.1
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCc
Q 010649 122 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 201 (505)
Q Consensus 122 ~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i 201 (505)
|++-|.+++.. ...+++|.|..|||||.+.+.-++..+.... ....++|++++|+..|.++.+.+.........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~ 74 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG----VPPERILVLTFTNAAAQEMRERIRELLEEEQQ 74 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS----STGGGEEEEESSHHHHHHHHHHHHHHHHHCCH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc----CChHHheecccCHHHHHHHHHHHHHhcCcccc
Confidence 57789999987 5678999999999999985554444444321 22456999999999999999988885432210
Q ss_pred eEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCcc--CCccEEEEcCcc
Q 010649 202 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNL--RRVTYLVLDEAD 256 (505)
Q Consensus 202 ~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l--~~~~~lVlDEah 256 (505)
.. ............-..+.|.|...+...+-+..... -.-.+-++|+..
T Consensus 75 ~~------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 75 ES------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp CC------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cc------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00 00001111222345789999988765443221111 123466777776
No 213
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.0029 Score=62.55 Aligned_cols=179 Identities=15% Similarity=0.110 Sum_probs=82.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 215 (505)
+..+++++|||+|||+.....+....... + ..++.+++. ...-.--.+.++.|+...++.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~-----G-~~~V~lit~-D~~R~ga~EqL~~~a~~~gv~~------------ 197 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF-----G-ASKVALLTT-DSYRIGGHEQLRIFGKILGVPV------------ 197 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-----C-CCeEEEEec-ccccccHHHHHHHHHHHcCCce------------
Confidence 45689999999999987554332222221 0 123444432 2221011233333332222222
Q ss_pred HHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCC-CHHHHHHHHHhcCCCCceEEecCCChHH-HHH
Q 010649 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIRPDRQTLYWSATWPKE-VEH 293 (505)
Q Consensus 216 ~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~-~~~~~~~il~~~~~~~~~v~~SAT~~~~-~~~ 293 (505)
..+.+++.+...+.. +.+.++|+||++-+..... ...++..+.....+...++.+|||...+ +.+
T Consensus 198 ---------~~~~~~~~l~~~l~~----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~e 264 (374)
T PRK14722 198 ---------HAVKDGGDLQLALAE----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNE 264 (374)
T ss_pred ---------EecCCcccHHHHHHH----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHH
Confidence 122333333333322 4567899999997543211 2233333322233445578899998544 344
Q ss_pred HHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCC
Q 010649 294 LARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDT 353 (505)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~ 353 (505)
.+..|....... .......-...+...++..+.-.+++++... +.++..++..
T Consensus 265 vi~~f~~~~~~p-----~~~~~~~~~~I~TKlDEt~~~G~~l~~~~~~--~lPi~yvt~G 317 (374)
T PRK14722 265 VVQAYRSAAGQP-----KAALPDLAGCILTKLDEASNLGGVLDTVIRY--KLPVHYVSTG 317 (374)
T ss_pred HHHHHHHhhccc-----ccccCCCCEEEEeccccCCCccHHHHHHHHH--CcCeEEEecC
Confidence 555553221000 0000001112233445555666677766654 2345444443
No 214
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.22 E-value=0.01 Score=58.61 Aligned_cols=128 Identities=20% Similarity=0.262 Sum_probs=71.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc-c-H-HHHHHHHHHHHHhcCCCCceEEEEECCCCch
Q 010649 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP-T-R-ELAVQIQQESTKFGASSKIKSTCIYGGVPKG 213 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P-t-~-~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~ 213 (505)
+.+++++|||+|||......+ ..+..+ +.++.++.. + | .-+.|+...... .+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA-~~L~~~-------GkkVglI~aDt~RiaAvEQLk~yae~----lg------------- 296 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMA-WQFHGK-------KKTVGFITTDHSRIGTVQQLQDYVKT----IG------------- 296 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHH-HHHHHc-------CCcEEEEecCCcchHHHHHHHHHhhh----cC-------------
Confidence 457899999999998754433 333321 444555443 2 2 334444433222 11
Q ss_pred HHHHHHhcCCcEE-EeChHHHHHHHHccCCccCCccEEEEcCcchhhcCC-CHHHHHHHHHhcCCCCceEEecCCCh-HH
Q 010649 214 PQVRDLQKGVEIV-IATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIRPDRQTLYWSATWP-KE 290 (505)
Q Consensus 214 ~~~~~~~~~~~Ii-v~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~-~~~~~~~il~~~~~~~~~v~~SAT~~-~~ 290 (505)
+.++ +.+|..+.+.+..... ..++++|++|-+=+..... ....+..++....++.-++.+|||.. ++
T Consensus 297 ---------ipv~v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d 366 (436)
T PRK11889 297 ---------FEVIAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 366 (436)
T ss_pred ---------CcEEecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHH
Confidence 2232 3466666655543111 1257899999997754321 23444555555556656677898754 56
Q ss_pred HHHHHHHHc
Q 010649 291 VEHLARQYL 299 (505)
Q Consensus 291 ~~~~~~~~~ 299 (505)
....++.|-
T Consensus 367 ~~~i~~~F~ 375 (436)
T PRK11889 367 MIEIITNFK 375 (436)
T ss_pred HHHHHHHhc
Confidence 677777664
No 215
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.19 E-value=0.011 Score=55.13 Aligned_cols=109 Identities=20% Similarity=0.283 Sum_probs=60.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHH
Q 010649 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 216 (505)
..+++.+++|+|||..+. .+..++... +..++++ +..+|...+...+.. .
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~~-------g~~v~~i-t~~~l~~~l~~~~~~---~------------------ 149 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLLR-------GKSVLII-TVADIMSAMKDTFSN---S------------------ 149 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHhc-------CCeEEEE-EHHHHHHHHHHHHhh---c------------------
Confidence 468999999999997644 355555442 4556666 333444333322210 0
Q ss_pred HHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHH-HHHHHHHhc-CCCCceEEecCCChHHHH
Q 010649 217 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEP-QIKKILSQI-RPDRQTLYWSATWPKEVE 292 (505)
Q Consensus 217 ~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~-~~~~il~~~-~~~~~~v~~SAT~~~~~~ 292 (505)
+ .+.+.+++. +.++++|||||++......+.. .+..|+... .....+++.|---+.++.
T Consensus 150 -------~---~~~~~~l~~-------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~ 210 (244)
T PRK07952 150 -------E---TSEEQLLND-------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMT 210 (244)
T ss_pred -------c---ccHHHHHHH-------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHH
Confidence 0 122222222 4468899999999876544443 344455543 235667776665554443
No 216
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.15 E-value=0.0024 Score=59.89 Aligned_cols=46 Identities=11% Similarity=0.208 Sum_probs=32.9
Q ss_pred CCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCCC
Q 010649 241 NTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW 287 (505)
Q Consensus 241 ~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~ 287 (505)
......++++|+||||.|.... ...+++.++......++++.+.-+
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCCh
Confidence 3445678999999999988654 556777777766666666666553
No 217
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.13 E-value=0.0023 Score=62.60 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=31.3
Q ss_pred CCcHHHHHHHHHHhcCC----cEEEEccCCCchHHHHHHHHHHHHhc
Q 010649 121 EPTPIQAQGWPMALKGR----DLIGIAETGSGKTLAYLLPAIVHVNA 163 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~----~~li~a~TGsGKT~~~~~~~l~~l~~ 163 (505)
.++|||...|..+.... -.++.+|.|.|||..+.. +...+..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~-~A~~llC 48 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER-LAAALLC 48 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH-HHHHHcC
Confidence 45899999999887543 378999999999987655 3444443
No 218
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.13 E-value=0.0014 Score=61.14 Aligned_cols=53 Identities=26% Similarity=0.457 Sum_probs=40.1
Q ss_pred CCCCCCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCc-EEEEccCCCchHHHHHHHHHHHHhcC
Q 010649 92 RDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQ 164 (505)
Q Consensus 92 ~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~-~li~a~TGsGKT~~~~~~~l~~l~~~ 164 (505)
..+|..+.+|+++++|+-+.+.+. ..+. +++.+|||||||.+ +.+++.+++..
T Consensus 99 R~Ip~~i~~~e~LglP~i~~~~~~-------------------~~~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 99 RLIPSKIPTLEELGLPPIVRELAE-------------------SPRGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred eccCccCCCHHHcCCCHHHHHHHh-------------------CCCceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 357888999999999988766321 1222 78889999999987 66688888764
No 219
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.11 E-value=0.00087 Score=60.45 Aligned_cols=54 Identities=26% Similarity=0.325 Sum_probs=36.8
Q ss_pred CCccEEEEcCcchhhc-CCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHH
Q 010649 245 RRVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQY 298 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~-~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~ 298 (505)
.++++|++|-+-+... ......+..++....+..-.+.+|||...+....+..+
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH
Confidence 4578999999876542 22356777778888788888999999876654444444
No 220
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.10 E-value=0.0021 Score=64.16 Aligned_cols=60 Identities=25% Similarity=0.282 Sum_probs=42.8
Q ss_pred CCcHHHHHHHHHH------hcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHH
Q 010649 121 EPTPIQAQGWPMA------LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (505)
Q Consensus 121 ~~~~~Q~~~i~~~------l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~ 188 (505)
+|++-|++++..+ .++..+++.++-|+|||... -.+...+.. .+..+++++||-.-|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~-~~i~~~~~~-------~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI-KAIIDYLRS-------RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH-HHHHHHhcc-------ccceEEEecchHHHHHhc
Confidence 3677899998887 56778999999999999752 223333322 266799999996555443
No 221
>PRK08116 hypothetical protein; Validated
Probab=97.09 E-value=0.023 Score=54.05 Aligned_cols=110 Identities=19% Similarity=0.207 Sum_probs=60.5
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHH
Q 010649 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~ 217 (505)
.+++.+++|+|||..+. ++...+..+ +..++++ +..+|..++...+.... .
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~~~-------~~~v~~~-~~~~ll~~i~~~~~~~~---------------~----- 166 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELIEK-------GVPVIFV-NFPQLLNRIKSTYKSSG---------------K----- 166 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHHc-------CCeEEEE-EHHHHHHHHHHHHhccc---------------c-----
Confidence 49999999999998644 356665542 3345554 44556554444332100 0
Q ss_pred HHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCC-CHHHHHHHHHhc-CCCCceEEecCCChHHHHH
Q 010649 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQI-RPDRQTLYWSATWPKEVEH 293 (505)
Q Consensus 218 ~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~-~~~~~~~il~~~-~~~~~~v~~SAT~~~~~~~ 293 (505)
.+...+++. +.+.++|||||++...... ....+..++... .....+|+.|-..+.++..
T Consensus 167 ----------~~~~~~~~~-------l~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~~ 227 (268)
T PRK08116 167 ----------EDENEIIRS-------LVNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELKN 227 (268)
T ss_pred ----------ccHHHHHHH-------hcCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH
Confidence 011112121 3456899999996432221 234455555543 3456778777776666543
No 222
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.05 E-value=0.0013 Score=55.51 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=25.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 184 (505)
+..+++.+|+|+|||..+.. ++..+... ...++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~-l~~~~~~~-------~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA-LARELGPP-------GGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH-HHhccCCC-------CCCEEEECCEEcc
Confidence 45789999999999986433 33332221 1247777776543
No 223
>PRK06921 hypothetical protein; Provisional
Probab=97.05 E-value=0.014 Score=55.33 Aligned_cols=44 Identities=23% Similarity=0.151 Sum_probs=27.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ 187 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q 187 (505)
+.++++.+++|+|||..+. ++...+..+ .+..|+++.. .++..+
T Consensus 117 ~~~l~l~G~~G~GKThLa~-aia~~l~~~------~g~~v~y~~~-~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT-AAANELMRK------KGVPVLYFPF-VEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHhhh------cCceEEEEEH-HHHHHH
Confidence 5679999999999997533 344444432 1455666654 345443
No 224
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.97 E-value=0.016 Score=57.10 Aligned_cols=135 Identities=19% Similarity=0.242 Sum_probs=76.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 215 (505)
++.+.+++|||.|||++-.-.+...... .......||-..|-=.. -.++++.|+.-.++.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~-----~~~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~------------ 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVML-----KKKKKVAIITTDTYRIG--AVEQLKTYADIMGVPL------------ 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhh-----ccCcceEEEEeccchhh--HHHHHHHHHHHhCCce------------
Confidence 5678999999999998733222222211 11233355555543222 2344444443333322
Q ss_pred HHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhh-cCCCHHHHHHHHHhcCCCCceEEecCCCh-HHHHH
Q 010649 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML-DMGFEPQIKKILSQIRPDRQTLYWSATWP-KEVEH 293 (505)
Q Consensus 216 ~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~-~~~~~~~~~~il~~~~~~~~~v~~SAT~~-~~~~~ 293 (505)
.++-+|.-|...+.. +.++++|.+|=+-+-. |.....++..++....+.--.+.+|||.. .++.+
T Consensus 264 ---------~vv~~~~el~~ai~~----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlke 330 (407)
T COG1419 264 ---------EVVYSPKELAEAIEA----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKE 330 (407)
T ss_pred ---------EEecCHHHHHHHHHH----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHH
Confidence 344556556555443 6677889999887532 22235566666666655566788899874 45666
Q ss_pred HHHHHccCC
Q 010649 294 LARQYLYNP 302 (505)
Q Consensus 294 ~~~~~~~~~ 302 (505)
....|-.-+
T Consensus 331 i~~~f~~~~ 339 (407)
T COG1419 331 IIKQFSLFP 339 (407)
T ss_pred HHHHhccCC
Confidence 666665433
No 225
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.97 E-value=0.032 Score=56.68 Aligned_cols=129 Identities=22% Similarity=0.211 Sum_probs=67.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHH-hcCCCCCCCCCCEEEEEc-cc-HHHHHHHHHHHHHhcCCCCceEEEEECCCCc
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHV-NAQPFLAPGDGPIVLVLA-PT-RELAVQIQQESTKFGASSKIKSTCIYGGVPK 212 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l-~~~~~~~~~~~~~vlil~-Pt-~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~ 212 (505)
++.+++.+|||+|||.+....+.... .. .+.+|.++. .+ +.-+ .+++..+....++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~-------~g~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~--------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY-------GKKKVALITLDTYRIGA---VEQLKTYAKIMGIPV--------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-------CCCeEEEEECCccHHHH---HHHHHHHHHHhCCce---------
Confidence 45688899999999987554333222 12 134455443 22 2211 123333322222221
Q ss_pred hHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcC-CCHHHHHHHHH-hcCCCCceEEecCCChH-
Q 010649 213 GPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM-GFEPQIKKILS-QIRPDRQTLYWSATWPK- 289 (505)
Q Consensus 213 ~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~-~~~~~~~~il~-~~~~~~~~v~~SAT~~~- 289 (505)
..+.++..+...+.. +.++++||||.+-+.... .....+..++. ...+....+.+|||...
T Consensus 282 ------------~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~ 345 (424)
T PRK05703 282 ------------EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYE 345 (424)
T ss_pred ------------EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHH
Confidence 122344445455443 346899999998654321 12345555555 22344557888998764
Q ss_pred HHHHHHHHHc
Q 010649 290 EVEHLARQYL 299 (505)
Q Consensus 290 ~~~~~~~~~~ 299 (505)
++.+....|-
T Consensus 346 ~l~~~~~~f~ 355 (424)
T PRK05703 346 DLKDIYKHFS 355 (424)
T ss_pred HHHHHHHHhC
Confidence 5555555553
No 226
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.96 E-value=0.016 Score=58.06 Aligned_cols=72 Identities=15% Similarity=0.011 Sum_probs=46.2
Q ss_pred CCCCcHHHHHHHHHHh----cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 010649 119 FFEPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (505)
Q Consensus 119 ~~~~~~~Q~~~i~~~l----~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~ 194 (505)
|...+|-|-+-.-.+. .+.++++.+|+|+|||.+.+..++......+. ...++++++-|..=.+...++++.
T Consensus 14 Y~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~----~~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 14 YDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD----EHRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred CcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc----ccceEEEecCcchHHHHHHHHHHH
Confidence 3455777776655443 35679999999999998866555555555431 245577777666555555555544
No 227
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.94 E-value=0.0087 Score=53.58 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=34.0
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 139 ~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
+++.+|+|+|||..++-.+...+.. +..++|++.. +-..++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~--------g~~v~~~s~e-~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR--------GEPGLYVTLE-ESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC--------CCcEEEEECC-CCHHHHHHHHHHcC
Confidence 6889999999998755544444332 5668888654 56677777777664
No 228
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.90 E-value=0.009 Score=69.01 Aligned_cols=65 Identities=25% Similarity=0.227 Sum_probs=45.2
Q ss_pred CCCcHHHHHHHHHHhcC--CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHH
Q 010649 120 FEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~--~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~ 188 (505)
..|++-|.+|+..++.. +-+++.+..|+|||.+. -.++..+... ....+..++.++||-.-+..+
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l-~~i~~~~~~l---~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF-RAVMSAVNML---PESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH-HHHHHHHHHH---hhccCceEEEEechHHHHHHH
Confidence 37899999999999965 56899999999999863 2223222210 011256799999997666554
No 229
>PHA02533 17 large terminase protein; Provisional
Probab=96.88 E-value=0.0072 Score=63.02 Aligned_cols=149 Identities=13% Similarity=0.042 Sum_probs=84.9
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 010649 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~ 199 (505)
+.|.|+|.+.+..+..++-.++..+=..|||.+....++..+... .+..+++++|+..-|..+.+.++......
T Consensus 58 f~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~------~~~~v~i~A~~~~QA~~vF~~ik~~ie~~ 131 (534)
T PHA02533 58 VQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN------KDKNVGILAHKASMAAEVLDRTKQAIELL 131 (534)
T ss_pred cCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC------CCCEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 368999999998876666667888889999987665454444432 25689999999999988888877543321
Q ss_pred C--ceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCC-
Q 010649 200 K--IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRP- 276 (505)
Q Consensus 200 ~--i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~- 276 (505)
. ++...... ......+.++..|.+.|.+ .....-..++++|+||+|.+.+ +...+..+...+..
T Consensus 132 P~l~~~~i~~~----~~~~I~l~NGS~I~~lss~-------~~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg 198 (534)
T PHA02533 132 PDFLQPGIVEW----NKGSIELENGSKIGAYASS-------PDAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSG 198 (534)
T ss_pred HHHhhcceeec----CccEEEeCCCCEEEEEeCC-------CCccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcC
Confidence 1 01000000 0011112344555444421 0111123467899999998754 23444444444432
Q ss_pred -CCceEEecCCC
Q 010649 277 -DRQTLYWSATW 287 (505)
Q Consensus 277 -~~~~v~~SAT~ 287 (505)
..+++.+|.+.
T Consensus 199 ~~~r~iiiSTp~ 210 (534)
T PHA02533 199 RSSKIIITSTPN 210 (534)
T ss_pred CCceEEEEECCC
Confidence 23455555443
No 230
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.88 E-value=0.0032 Score=58.50 Aligned_cols=86 Identities=28% Similarity=0.369 Sum_probs=66.2
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCC-CchHHHHHHhc-CCcEEEeChHHHHHHHHccCCccCCcc
Q 010649 171 DGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGV-PKGPQVRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVT 248 (505)
Q Consensus 171 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~-~~~~~~~~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~ 248 (505)
..|.+||||.+-.-|..+...++.|... ...++-++.-. ...++...+.. ...|.|+||+||..+++.+.+.++++.
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 4789999999988888888888887411 12333344332 45566666664 689999999999999999999999999
Q ss_pred EEEEcCcch
Q 010649 249 YLVLDEADR 257 (505)
Q Consensus 249 ~lVlDEah~ 257 (505)
+||||--|.
T Consensus 204 ~ivlD~s~~ 212 (252)
T PF14617_consen 204 RIVLDWSYL 212 (252)
T ss_pred EEEEcCCcc
Confidence 999998773
No 231
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.85 E-value=0.014 Score=68.43 Aligned_cols=127 Identities=20% Similarity=0.171 Sum_probs=75.7
Q ss_pred CCCcHHHHHHHHHHhcC--CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcC
Q 010649 120 FEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~--~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~ 197 (505)
..|++.|.+|+..++.. +-+++.+..|+|||.+ +-.++..+... ....+..++.++||---|.++.+ .
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l---~~~~~~~V~glAPTgrAAk~L~e----~-- 1035 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTL---PESERPRVVGLGPTHRAVGEMRS----A-- 1035 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHh---hcccCceEEEECCcHHHHHHHHh----c--
Confidence 46899999999999975 4589999999999976 33343333221 11125679999999766654432 1
Q ss_pred CCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHH----ccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHh
Q 010649 198 SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLE----SHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 273 (505)
Q Consensus 198 ~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~----~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~ 273 (505)
++. -.|..+|+.... .........++|||||+-.+. ...+..++..
T Consensus 1036 --Gi~------------------------A~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~----~~~m~~Ll~~ 1085 (1747)
T PRK13709 1036 --GVD------------------------AQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVG----NTDMARAYAL 1085 (1747)
T ss_pred --Ccc------------------------hhhHHHHhcccccccccccCCCCCCcEEEEEcccccc----HHHHHHHHHh
Confidence 111 122222221110 111122345899999999765 3455566665
Q ss_pred cCC-CCceEEecCC
Q 010649 274 IRP-DRQTLYWSAT 286 (505)
Q Consensus 274 ~~~-~~~~v~~SAT 286 (505)
+.. ..++|++--+
T Consensus 1086 ~~~~garvVLVGD~ 1099 (1747)
T PRK13709 1086 IAAGGGRAVSSGDT 1099 (1747)
T ss_pred hhcCCCEEEEecch
Confidence 553 5677766544
No 232
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.84 E-value=0.085 Score=54.89 Aligned_cols=210 Identities=15% Similarity=0.259 Sum_probs=122.7
Q ss_pred ccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccC-CcEE-----------------EEc
Q 010649 247 VTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYN-PYKV-----------------IIG 308 (505)
Q Consensus 247 ~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~-~~~~-----------------~~~ 308 (505)
++++.+|-|.++. .++.. .+-+++..+|+.+ +.++...++.. +..+ .+.
T Consensus 527 lky~lL~pA~~f~---------evv~e---aravvLAGGTMeP-~~e~~e~L~~~~~~~i~~fsc~Hvip~e~il~~vv~ 593 (821)
T KOG1133|consen 527 LKYMLLNPAKHFA---------EVVLE---ARAVVLAGGTMEP-VDELREQLFPGCPERISPFSCSHVIPPENILPLVVS 593 (821)
T ss_pred EEEEecCcHHHHH---------HHHHH---hheeeecCCcccc-HHHHHHHhcccchhhccceecccccChhheeeeeec
Confidence 5677777777632 23322 2447888899866 55555555441 1110 001
Q ss_pred CCCcccccceeeeeeccChhHHHHHHHHHHHh---hcCCCeEEEEeCCcccHHHHHHHHHhCCC-------CeEEEcCCC
Q 010649 309 SPDLKANHAIRQHVDIVSESQKYNKLVKLLED---IMDGSRILIFMDTKKGCDQITRQLRMDGW-------PALSIHGDK 378 (505)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~~vlVF~~~~~~~~~l~~~L~~~~~-------~~~~lhg~~ 378 (505)
.. .....+...+..-.....+..|-..+.. ..+ +-+++|+++.+....+...+++.|+ +.++.-...
T Consensus 594 ~g--psg~p~eftf~~R~s~~~l~~l~~~~~nL~~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~ 670 (821)
T KOG1133|consen 594 SG--PSGQPLEFTFETRESPEMIKDLGSSISNLSNAVP-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKD 670 (821)
T ss_pred cC--CCCCceEEEeeccCChHHHHHHHHHHHHHHhhCC-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCcc
Confidence 00 0111122222223333444444444443 334 5699999999999999998887653 222222222
Q ss_pred CHHHHHHHHHHHh----cCCCcEEEEc--ccccccCCCCC--CCEEEEcCCCCC--------------------------
Q 010649 379 SQAERDWVLSEFK----AGKSPIMTAT--DVAARGLDVKD--VKYVINYDFPGS-------------------------- 424 (505)
Q Consensus 379 ~~~~r~~~~~~f~----~g~~~vLVaT--~~~~~Gidi~~--~~~Vi~~~~p~s-------------------------- 424 (505)
+ -+.+++.|. .|.-.+|+|. .-+++|||+.+ ++.||-+++|..
T Consensus 671 ~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke 747 (821)
T KOG1133|consen 671 T---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKE 747 (821)
T ss_pred c---HHHHHHHHHHHhhcCCCeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHH
Confidence 2 344566664 4555677776 77899999987 778887777641
Q ss_pred ------hhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHHhCCCCCHHHHHhhcCCCCCC
Q 010649 425 ------LEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAMGRGAPPSS 485 (505)
Q Consensus 425 ------~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~~~~~ 485 (505)
+...-|.||||-|.-++-.++++++. ++.+.... .+|.|+.+......+.|
T Consensus 748 ~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~---RY~~p~~R-------KLp~WI~~~v~s~~~~G 804 (821)
T KOG1133|consen 748 LYENLCMKAVNQSIGRAIRHRKDYASIYLLDK---RYARPLSR-------KLPKWIRKRVHSKAGFG 804 (821)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccceeEEEehh---hhcCchhh-------hccHHHHhHhccccCcc
Confidence 22345999999998777666666654 33333222 78999988777654443
No 233
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.82 E-value=0.012 Score=57.14 Aligned_cols=143 Identities=21% Similarity=0.186 Sum_probs=75.3
Q ss_pred CCCcHHHHHHHHHHhc----CC---cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHH
Q 010649 120 FEPTPIQAQGWPMALK----GR---DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 192 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~----~~---~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 192 (505)
..++|||..++..+.+ ++ -+++.+|.|.||+..+.. +...+....... .. .|+.. ..+
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~-lA~~LlC~~~~~---~~----~c~~c-------~~~ 67 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA-LAEHVLASGPDP---AA----AQRTR-------QLI 67 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHhCCCCCC---CC----cchHH-------HHH
Confidence 4679999999987653 33 388999999999987554 444444432110 00 12211 111
Q ss_pred HHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHH
Q 010649 193 TKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILS 272 (505)
Q Consensus 193 ~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~ 272 (505)
.-+...++.++......... .....|.|-....+.+.+... ......+++||||||.|.... .+.+.++++
T Consensus 68 -~~g~HPD~~~i~~~p~~~~~------k~~~~I~idqIR~l~~~~~~~-p~~g~~kV~iI~~ae~m~~~A-aNaLLKtLE 138 (319)
T PRK08769 68 -AAGTHPDLQLVSFIPNRTGD------KLRTEIVIEQVREISQKLALT-PQYGIAQVVIVDPADAINRAA-CNALLKTLE 138 (319)
T ss_pred -hcCCCCCEEEEecCCCcccc------cccccccHHHHHHHHHHHhhC-cccCCcEEEEeccHhhhCHHH-HHHHHHHhh
Confidence 11222333332111100000 000123322222233333322 223467899999999997554 667777787
Q ss_pred hcCCCCceEEecCC
Q 010649 273 QIRPDRQTLYWSAT 286 (505)
Q Consensus 273 ~~~~~~~~v~~SAT 286 (505)
.-+++..+|+.|..
T Consensus 139 EPp~~~~fiL~~~~ 152 (319)
T PRK08769 139 EPSPGRYLWLISAQ 152 (319)
T ss_pred CCCCCCeEEEEECC
Confidence 77677777776654
No 234
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.73 E-value=0.047 Score=51.70 Aligned_cols=129 Identities=19% Similarity=0.233 Sum_probs=73.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc-c--HHHHHHHHHHHHHhcCCCCceEEEEECCCCc
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP-T--RELAVQIQQESTKFGASSKIKSTCIYGGVPK 212 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P-t--~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~ 212 (505)
+..+++.+++|+|||..+...+ ..+..+ +.++.++.. + ...+.||....... ++
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~-~~l~~~-------~~~v~~i~~D~~ri~~~~ql~~~~~~~----~~----------- 131 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMA-WQFHGK-------KKTVGFITTDHSRIGTVQQLQDYVKTI----GF----------- 131 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHH-HHHHHc-------CCeEEEEecCCCCHHHHHHHHHHhhhc----Cc-----------
Confidence 4578999999999998755432 222221 344544443 2 24555665444332 12
Q ss_pred hHHHHHHhcCCcEEE-eChHHHHHHHHccCCccCCccEEEEcCcchhhcC-CCHHHHHHHHHhcCCCCceEEecCCC-hH
Q 010649 213 GPQVRDLQKGVEIVI-ATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATW-PK 289 (505)
Q Consensus 213 ~~~~~~~~~~~~Iiv-~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~-~~~~~~~~il~~~~~~~~~v~~SAT~-~~ 289 (505)
.+.. .++..+.+.+..- ....+++++|+|-+=+.... .....+..++....++.-++.+|||. ..
T Consensus 132 -----------~~~~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~ 199 (270)
T PRK06731 132 -----------EVIAVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 199 (270)
T ss_pred -----------eEEecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH
Confidence 2222 3455554444321 11236789999999776422 12344555566666666677899986 45
Q ss_pred HHHHHHHHHc
Q 010649 290 EVEHLARQYL 299 (505)
Q Consensus 290 ~~~~~~~~~~ 299 (505)
+..+.++.|-
T Consensus 200 d~~~~~~~f~ 209 (270)
T PRK06731 200 DMIEIITNFK 209 (270)
T ss_pred HHHHHHHHhC
Confidence 6777777764
No 235
>PRK08727 hypothetical protein; Validated
Probab=96.72 E-value=0.012 Score=54.82 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=27.6
Q ss_pred CCccEEEEcCcchhhcCC-CHHHHHHHHHhcC-CCCceEEecCCChHHH
Q 010649 245 RRVTYLVLDEADRMLDMG-FEPQIKKILSQIR-PDRQTLYWSATWPKEV 291 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~~-~~~~~~~il~~~~-~~~~~v~~SAT~~~~~ 291 (505)
.+.++||+||+|.+.... ....+..++.... ...++|+.|-..|.+.
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 456789999999876432 2233444444443 2345666666666554
No 236
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=96.71 E-value=0.0018 Score=73.69 Aligned_cols=93 Identities=26% Similarity=0.365 Sum_probs=76.2
Q ss_pred eEEEEeCCcccHHHHHHHHHhC-CCCeEEEcCCCC-----------HHHHHHHHHHHhcCCCcEEEEcccccccCCCCCC
Q 010649 346 RILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKS-----------QAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV 413 (505)
Q Consensus 346 ~vlVF~~~~~~~~~l~~~L~~~-~~~~~~lhg~~~-----------~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~ 413 (505)
..++||+....+..+...+++. .+.+..+.|.+. ...+.+++..|....+++|++|.++.+|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 4679999999998888888764 233333444332 2236789999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHhhcccccC
Q 010649 414 KYVINYDFPGSLEDYVHRIGRTGRA 438 (505)
Q Consensus 414 ~~Vi~~~~p~s~~~~~Qr~GR~~R~ 438 (505)
+.|+.++.|.....|+|..||+-+.
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccc
Confidence 9999999999999999999999664
No 237
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.70 E-value=0.014 Score=50.61 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=23.8
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHH
Q 010649 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (505)
Q Consensus 139 ~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 184 (505)
+++.+++|+|||..+.. ++..+.. .+..++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~-i~~~~~~-------~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQ-LALNIAT-------KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHH-HHHHHHh-------cCCEEEEEECCcch
Confidence 57899999999986444 3333322 14557777665433
No 238
>PRK12377 putative replication protein; Provisional
Probab=96.67 E-value=0.038 Score=51.70 Aligned_cols=107 Identities=15% Similarity=0.183 Sum_probs=58.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 215 (505)
..++++.+|+|+|||..+.. +...+... +..|+++ +..+|..++...+.. .
T Consensus 101 ~~~l~l~G~~GtGKThLa~A-Ia~~l~~~-------g~~v~~i-~~~~l~~~l~~~~~~---~----------------- 151 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAA-IGNRLLAK-------GRSVIVV-TVPDVMSRLHESYDN---G----------------- 151 (248)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHc-------CCCeEEE-EHHHHHHHHHHHHhc---c-----------------
Confidence 35799999999999976443 45555442 4445444 445666655443211 0
Q ss_pred HHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCC-HHHHHHHHHhcC-CCCceEEecCCChHH
Q 010649 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF-EPQIKKILSQIR-PDRQTLYWSATWPKE 290 (505)
Q Consensus 216 ~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~-~~~~~~il~~~~-~~~~~v~~SAT~~~~ 290 (505)
.+...+++. +.++++|||||++......+ ...+..++.... ....+++.|---..+
T Consensus 152 ------------~~~~~~l~~-------l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~ 209 (248)
T PRK12377 152 ------------QSGEKFLQE-------LCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEA 209 (248)
T ss_pred ------------chHHHHHHH-------hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHH
Confidence 011111121 45788999999965433322 234444554433 346677666543333
No 239
>PRK06893 DNA replication initiation factor; Validated
Probab=96.64 E-value=0.0063 Score=56.52 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=28.5
Q ss_pred CCccEEEEcCcchhhcC-CCHHHHHHHHHhcCC-CCceEEecCCChH
Q 010649 245 RRVTYLVLDEADRMLDM-GFEPQIKKILSQIRP-DRQTLYWSATWPK 289 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~-~~~~~~~~il~~~~~-~~~~v~~SAT~~~ 289 (505)
.+.++||+||+|.+... .+...+..++..+.. ..+++++|++.++
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p 136 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSP 136 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCCh
Confidence 46789999999987632 234455555655543 3456677776543
No 240
>PRK05642 DNA replication initiation factor; Validated
Probab=96.63 E-value=0.013 Score=54.66 Aligned_cols=44 Identities=16% Similarity=0.320 Sum_probs=27.7
Q ss_pred CCccEEEEcCcchhhcC-CCHHHHHHHHHhcCCCCceEEecCCCh
Q 010649 245 RRVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWP 288 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~-~~~~~~~~il~~~~~~~~~v~~SAT~~ 288 (505)
.++++||+|++|.+... .+...+..++..+......++++++.+
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 35678999999987543 334556777766654434455555543
No 241
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.59 E-value=0.011 Score=61.87 Aligned_cols=108 Identities=16% Similarity=0.138 Sum_probs=60.0
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHH
Q 010649 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~ 217 (505)
.+++.+++|+|||... -++...+... ..+.+++++.. .++++++...+..-
T Consensus 316 pL~LyG~sGsGKTHLL-~AIa~~a~~~-----~~g~~V~Yita-eef~~el~~al~~~---------------------- 366 (617)
T PRK14086 316 PLFIYGESGLGKTHLL-HAIGHYARRL-----YPGTRVRYVSS-EEFTNEFINSIRDG---------------------- 366 (617)
T ss_pred cEEEECCCCCCHHHHH-HHHHHHHHHh-----CCCCeEEEeeH-HHHHHHHHHHHHhc----------------------
Confidence 3899999999999752 2344443321 11455766654 45554443332210
Q ss_pred HHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCC-CHHHHHHHHHhcC-CCCceEEecCCChHHHH
Q 010649 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIR-PDRQTLYWSATWPKEVE 292 (505)
Q Consensus 218 ~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~-~~~~~~~il~~~~-~~~~~v~~SAT~~~~~~ 292 (505)
..+.+... +.++++|||||+|.+.... ....+..++..+. ...++|+.|-..|.++.
T Consensus 367 -----------~~~~f~~~-------y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 367 -----------KGDSFRRR-------YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred -----------cHHHHHHH-------hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 01111111 3457899999999886543 2344445555554 35677776666665543
No 242
>PRK09183 transposase/IS protein; Provisional
Probab=96.57 E-value=0.03 Score=52.99 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=29.6
Q ss_pred HHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHH
Q 010649 132 MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (505)
Q Consensus 132 ~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~ 188 (505)
++..+.++++.+|+|+|||..+...+ ..+.. .+..++++. ..+|..++
T Consensus 98 ~i~~~~~v~l~Gp~GtGKThLa~al~-~~a~~-------~G~~v~~~~-~~~l~~~l 145 (259)
T PRK09183 98 FIERNENIVLLGPSGVGKTHLAIALG-YEAVR-------AGIKVRFTT-AADLLLQL 145 (259)
T ss_pred chhcCCeEEEEeCCCCCHHHHHHHHH-HHHHH-------cCCeEEEEe-HHHHHHHH
Confidence 35567899999999999997655422 22222 155576654 33554433
No 243
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.57 E-value=0.0073 Score=58.85 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=16.1
Q ss_pred CcEEEEccCCCchHHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~ 155 (505)
.++|+.+|+|+|||..+-+
T Consensus 49 ~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL 67 (436)
T ss_pred ceeEEECCCCCCHHHHHHH
Confidence 3699999999999987654
No 244
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.53 E-value=0.06 Score=52.68 Aligned_cols=111 Identities=14% Similarity=0.216 Sum_probs=60.9
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchH
Q 010649 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 214 (505)
.+.++++.++||+|||..+. ++...+... +..|+++. ..+|..++... .+... .
T Consensus 182 ~~~~Lll~G~~GtGKThLa~-aIa~~l~~~-------g~~V~y~t-~~~l~~~l~~~--~~~~~---------------~ 235 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSN-CIAKELLDR-------GKSVIYRT-ADELIEILREI--RFNND---------------K 235 (329)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHHHC-------CCeEEEEE-HHHHHHHHHHH--Hhccc---------------h
Confidence 35789999999999997643 344445442 55566654 34565544331 11000 0
Q ss_pred HHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCC-HHHHHHHHHhcC-CCCceEEecCCChHHHH
Q 010649 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF-EPQIKKILSQIR-PDRQTLYWSATWPKEVE 292 (505)
Q Consensus 215 ~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~-~~~~~~il~~~~-~~~~~v~~SAT~~~~~~ 292 (505)
... ..+ ..+.++++||||+.+......| ...+..++.... ....+|+.|--.+.++.
T Consensus 236 ~~~-----------------~~~----~~l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~ 294 (329)
T PRK06835 236 ELE-----------------EVY----DLLINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELL 294 (329)
T ss_pred hHH-----------------HHH----HHhccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 000 001 1145678999999987654332 334555555443 34567766665555553
No 245
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.51 E-value=0.022 Score=53.60 Aligned_cols=51 Identities=20% Similarity=0.263 Sum_probs=34.3
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 010649 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~ 194 (505)
++.++++.+|+|+|||..+.. +...+... +..|++ +++.+|+.++...+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~A-i~~~l~~~-------g~sv~f-~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIA-IGNELLKA-------GISVLF-ITAPDLLSKLKAAFDE 154 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHH-HHHHHHHc-------CCeEEE-EEHHHHHHHHHHHHhc
Confidence 678999999999999987544 44444431 444554 5566887776665543
No 246
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.51 E-value=0.015 Score=63.55 Aligned_cols=71 Identities=15% Similarity=0.112 Sum_probs=53.4
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
..|+|-|.+++... ...++|.|..|||||.+... -+.++.... .-....+|+|+.|+..|.++.+.+.++.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~-Ria~Li~~~---~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTH-RIAWLLSVE---NASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHH-HHHHHHHcC---CCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 35899999998653 46799999999999988443 445555421 1124569999999999999999998864
No 247
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.50 E-value=0.22 Score=51.35 Aligned_cols=129 Identities=19% Similarity=0.238 Sum_probs=62.3
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEc-cc-HHHHHHHHHHHHHhcCCCCceEEEEECCCCc
Q 010649 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA-PT-RELAVQIQQESTKFGASSKIKSTCIYGGVPK 212 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~-Pt-~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~ 212 (505)
.++.+++++|||+|||..+...+....... .+.++.++. .+ +.-+ .+.+..+....++.+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~------~gkkVaLIdtDtyRigA---~EQLk~ya~iLgv~v~-------- 411 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQH------APRDVALVTTDTQRVGG---REQLHSYGRQLGIAVH-------- 411 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhc------CCCceEEEecccccccH---HHHHHHhhcccCceeE--------
Confidence 356788899999999987543222222211 123344443 22 3222 1223333322222211
Q ss_pred hHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCC-CHHHHHHHHHhcCCCCceEEecCCCh-HH
Q 010649 213 GPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIRPDRQTLYWSATWP-KE 290 (505)
Q Consensus 213 ~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~-~~~~~~~il~~~~~~~~~v~~SAT~~-~~ 290 (505)
.+.++..+...+.. +.++++||||.+-+..... ...++..+.. ......+++++++.. .+
T Consensus 412 -------------~a~d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~a-a~~~a~lLVLpAtss~~D 473 (559)
T PRK12727 412 -------------EADSAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRA-ARQVTSLLVLPANAHFSD 473 (559)
T ss_pred -------------ecCcHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHH-hhcCCcEEEEECCCChhH
Confidence 11233444454443 3468899999997643211 1222333322 234455677777764 34
Q ss_pred HHHHHHHH
Q 010649 291 VEHLARQY 298 (505)
Q Consensus 291 ~~~~~~~~ 298 (505)
+.+.++.|
T Consensus 474 l~eii~~f 481 (559)
T PRK12727 474 LDEVVRRF 481 (559)
T ss_pred HHHHHHHH
Confidence 55555554
No 248
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.49 E-value=0.021 Score=60.84 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=26.5
Q ss_pred CCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
.+++++||||+|.|.... .+.+.++++..++...+|+.|
T Consensus 118 gr~KVIIIDEah~LT~~A-~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA-FNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHH-HHHHHHHHHhcCCCeEEEEEE
Confidence 467899999999987654 345556666655555555544
No 249
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.48 E-value=0.037 Score=59.55 Aligned_cols=139 Identities=18% Similarity=0.141 Sum_probs=74.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc-cHH--HHHHHHHHHHHhcCCCCceEEEEECCCCch
Q 010649 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP-TRE--LAVQIQQESTKFGASSKIKSTCIYGGVPKG 213 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P-t~~--La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~ 213 (505)
+-+.+++|||+|||+++...+....... .+.++.++.- +-- -++|+ +.+....++.+
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~------G~kkV~lit~Dt~RigA~eQL----~~~a~~~gvpv---------- 245 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVARE------GADQLALLTTDSFRIGALEQL----RIYGRILGVPV---------- 245 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHc------CCCeEEEecCcccchHHHHHH----HHHHHhCCCCc----------
Confidence 3478899999999987544222221221 1234544443 211 22333 33332222211
Q ss_pred HHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcC-CCHHHHHHHHHhcCCCCceEEecCCCh-HHH
Q 010649 214 PQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWP-KEV 291 (505)
Q Consensus 214 ~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~-~~~~~~~~il~~~~~~~~~v~~SAT~~-~~~ 291 (505)
.++.+|..+.+.+.. +.+.++|+||=+=+.... .....+..+.....+...++.++||.. ..+
T Consensus 246 -----------~~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l 310 (767)
T PRK14723 246 -----------HAVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTL 310 (767)
T ss_pred -----------cccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHH
Confidence 223466666666553 446689999988865432 123444444545556777888899874 445
Q ss_pred HHHHHHHcc----CCcEEEEcCC
Q 010649 292 EHLARQYLY----NPYKVIIGSP 310 (505)
Q Consensus 292 ~~~~~~~~~----~~~~~~~~~~ 310 (505)
.+.++.|.. ++..+++...
T Consensus 311 ~~i~~~f~~~~~~~i~glIlTKL 333 (767)
T PRK14723 311 NEVVHAYRHGAGEDVDGCIITKL 333 (767)
T ss_pred HHHHHHHhhcccCCCCEEEEecc
Confidence 556666642 3445555443
No 250
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.48 E-value=0.017 Score=59.01 Aligned_cols=109 Identities=14% Similarity=0.227 Sum_probs=60.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHH
Q 010649 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 216 (505)
..+++.+|+|+|||..+. ++...+... +.+++++.. ..+..+....+..
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~~-------~~~v~yi~~-~~f~~~~~~~l~~---------------------- 190 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRES-------GGKILYVRS-ELFTEHLVSAIRS---------------------- 190 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHHc-------CCCEEEeeH-HHHHHHHHHHHhc----------------------
Confidence 358999999999997533 344444432 455777764 3444433322211
Q ss_pred HHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCC-CHHHHHHHHHhc-CCCCceEEecCCChHHHHHH
Q 010649 217 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQI-RPDRQTLYWSATWPKEVEHL 294 (505)
Q Consensus 217 ~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~-~~~~~~~il~~~-~~~~~~v~~SAT~~~~~~~~ 294 (505)
...+.+... +.+.++|++||+|.+.... ....+..++..+ ....++|+.|.+.|.++..+
T Consensus 191 -----------~~~~~f~~~-------~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 191 -----------GEMQRFRQF-------YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred -----------chHHHHHHH-------cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 001111111 2467899999999886532 233444444433 24567777666667666544
No 251
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.47 E-value=0.071 Score=54.97 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=59.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHH
Q 010649 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 216 (505)
..+++.+|+|+|||..+.. +...+.... .+.+++++.. .++..++...+..-
T Consensus 149 ~~l~l~G~~G~GKThL~~a-i~~~~~~~~-----~~~~v~yi~~-~~~~~~~~~~~~~~--------------------- 200 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHA-IGNYILEKN-----PNAKVVYVTS-EKFTNDFVNALRNN--------------------- 200 (450)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHhC-----CCCeEEEEEH-HHHHHHHHHHHHcC---------------------
Confidence 3589999999999976433 444444321 1445666644 45554443333210
Q ss_pred HHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCC-CHHHHHHHHHhc-CCCCceEEecCCChHHHHH
Q 010649 217 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQI-RPDRQTLYWSATWPKEVEH 293 (505)
Q Consensus 217 ~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~-~~~~~~~il~~~-~~~~~~v~~SAT~~~~~~~ 293 (505)
+.+.+.+. +.++++|||||+|.+.... ....+..++..+ ....++++.|...|..+..
T Consensus 201 ------------~~~~~~~~-------~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~ 260 (450)
T PRK00149 201 ------------TMEEFKEK-------YRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPG 260 (450)
T ss_pred ------------cHHHHHHH-------HhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHH
Confidence 11222222 2357799999999876432 122333444333 2345666656555555443
No 252
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.47 E-value=0.021 Score=52.84 Aligned_cols=21 Identities=33% Similarity=0.257 Sum_probs=16.8
Q ss_pred cCCcEEEEccCCCchHHHHHH
Q 010649 135 KGRDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~~ 155 (505)
....+++.+|+|+|||..+..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 346799999999999986543
No 253
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.45 E-value=0.013 Score=53.23 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=15.3
Q ss_pred cEEEEccCCCchHHHHHH
Q 010649 138 DLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~ 155 (505)
++|+.+|+|+|||..+.+
T Consensus 52 h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp EEEEESSTTSSHHHHHHH
T ss_pred eEEEECCCccchhHHHHH
Confidence 589999999999986554
No 254
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.45 E-value=0.018 Score=63.04 Aligned_cols=70 Identities=14% Similarity=0.126 Sum_probs=52.9
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
.|+|-|.+++... ...++|.|..|||||.+... -+.++..... -....+|+|+-|+..|.++.+.+.++.
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~-Ria~Li~~~~---v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVH-RIAWLMQVEN---ASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHH-HHHHHHHcCC---CChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 5899999998743 46799999999999988443 4445543211 124469999999999999999998864
No 255
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.43 E-value=0.034 Score=56.41 Aligned_cols=53 Identities=21% Similarity=0.318 Sum_probs=35.8
Q ss_pred ccEEEEcCcchhhc-CCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHc
Q 010649 247 VTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYL 299 (505)
Q Consensus 247 ~~~lVlDEah~~~~-~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~ 299 (505)
.++||+|.+-+... ......+..+.....++.-++.++||...+..+.++.|.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~ 229 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFH 229 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHH
Confidence 37899999955432 123445666666667788888889988776666666653
No 256
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.43 E-value=0.013 Score=54.70 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=25.6
Q ss_pred ccEEEEcCcchhhcC-CCHHHHHHHHHhcCC-C-CceEEecCCChHH
Q 010649 247 VTYLVLDEADRMLDM-GFEPQIKKILSQIRP-D-RQTLYWSATWPKE 290 (505)
Q Consensus 247 ~~~lVlDEah~~~~~-~~~~~~~~il~~~~~-~-~~~v~~SAT~~~~ 290 (505)
+++|||||+|.+... .+...+..++..+.. . .++++.|..+|..
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~ 144 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQ 144 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHH
Confidence 478999999988643 234455555555432 2 3555545444443
No 257
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.43 E-value=0.023 Score=49.64 Aligned_cols=43 Identities=14% Similarity=0.243 Sum_probs=31.8
Q ss_pred CCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCCCh
Q 010649 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWP 288 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~ 288 (505)
...+++|+||||.|.... .+.+.++++.-+.+..++++|..+.
T Consensus 101 ~~~KviiI~~ad~l~~~a-~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEA-QNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-HHH-HHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CCceEEEeehHhhhhHHH-HHHHHHHhcCCCCCEEEEEEECChH
Confidence 568899999999987654 6777788888777777777776543
No 258
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.43 E-value=0.021 Score=68.51 Aligned_cols=62 Identities=23% Similarity=0.176 Sum_probs=44.5
Q ss_pred CCCcHHHHHHHHHHhcCC--cEEEEccCCCchHHHHH---HHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHH
Q 010649 120 FEPTPIQAQGWPMALKGR--DLIGIAETGSGKTLAYL---LPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~--~~li~a~TGsGKT~~~~---~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~ 188 (505)
..+++.|.+|+..++.+. -+++.+..|+|||.+.. -++...+.. .+..++.++||-.-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~-------~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES-------EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh-------cCCeEEEEeChHHHHHHH
Confidence 478999999999988754 47888999999997631 222222222 266799999997666544
No 259
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.40 E-value=0.021 Score=62.55 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=28.8
Q ss_pred CCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
.+++++||||+|+|.... .+.+.++++..+....+|+.+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 578899999999998654 456667777766666666655
No 260
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.40 E-value=0.021 Score=56.00 Aligned_cols=42 Identities=21% Similarity=0.128 Sum_probs=30.2
Q ss_pred cCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCC
Q 010649 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT 286 (505)
....+++|||+||+|.... .+.+.+.++.-++...+|+.|..
T Consensus 130 ~~~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~t~fiL~t~~ 171 (342)
T PRK06964 130 RGGARVVVLYPAEALNVAA-ANALLKTLEEPPPGTVFLLVSAR 171 (342)
T ss_pred cCCceEEEEechhhcCHHH-HHHHHHHhcCCCcCcEEEEEECC
Confidence 4567899999999997654 56677777766666666665554
No 261
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.39 E-value=0.016 Score=62.42 Aligned_cols=78 Identities=22% Similarity=0.194 Sum_probs=55.1
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 010649 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~ 199 (505)
..|++-|.+++-.. ..+++|.|..|||||.+.+. -+.++.... ...+..+|+|+.|+..|..+.+.+.......
T Consensus 195 ~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~-r~ayLl~~~---~~~~~~IL~ltft~~AA~em~eRL~~~lg~~ 268 (684)
T PRK11054 195 SPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVA-RAGWLLARG---QAQPEQILLLAFGRQAAEEMDERIRERLGTE 268 (684)
T ss_pred CCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHH-HHHHHHHhC---CCCHHHeEEEeccHHHHHHHHHHHHHhcCCC
Confidence 47999999998643 35689999999999988444 444444321 1124569999999999999999887754433
Q ss_pred CceE
Q 010649 200 KIKS 203 (505)
Q Consensus 200 ~i~~ 203 (505)
++.+
T Consensus 269 ~v~v 272 (684)
T PRK11054 269 DITA 272 (684)
T ss_pred CcEE
Confidence 3333
No 262
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.32 E-value=0.0035 Score=55.01 Aligned_cols=123 Identities=22% Similarity=0.218 Sum_probs=53.1
Q ss_pred EEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHH
Q 010649 140 IGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL 219 (505)
Q Consensus 140 li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~ 219 (505)
++.|+-|-|||.+.-+ ++..+... ....++|.+|+.+-++.+++.+.+-....+++..... .........
T Consensus 1 VltA~RGRGKSa~lGl-~~a~l~~~------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~---~~~~~~~~~ 70 (177)
T PF05127_consen 1 VLTADRGRGKSAALGL-AAAALIQK------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKK---RIGQIIKLR 70 (177)
T ss_dssp -EEE-TTSSHHHHHHH-CCCCSSS-----------EEEE-SS--S-HHHHHCC---------------------------
T ss_pred CccCCCCCCHHHHHHH-HHHHHHHh------cCceEEEecCCHHHHHHHHHHHHhhcccccccccccc---ccccccccc
Confidence 5789999999976333 33333332 1256999999998887777666554433332220000 000000011
Q ss_pred hcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCCC
Q 010649 220 QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW 287 (505)
Q Consensus 220 ~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~ 287 (505)
.....|-+..|+.+... ....++||||||=.+. .+.+..++... ..++||.|.
T Consensus 71 ~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~ll~~~----~~vv~stTi 123 (177)
T PF05127_consen 71 FNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAIP----LPLLKQLLRRF----PRVVFSTTI 123 (177)
T ss_dssp --CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCS----SEEEEEEEB
T ss_pred cccceEEEECCHHHHhC-------cCCCCEEEEechhcCC----HHHHHHHHhhC----CEEEEEeec
Confidence 12456777777665322 2245899999999875 66777775433 346667774
No 263
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.31 E-value=0.031 Score=55.20 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=26.1
Q ss_pred CCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecC
Q 010649 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 285 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SA 285 (505)
...++||+||+|.+.... ...+..++...+....+|+.+.
T Consensus 124 ~~~~vlilDe~~~l~~~~-~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALREDA-QQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHHH-HHHHHHHHHhccCCCeEEEEeC
Confidence 456799999999875432 4456666666656566555443
No 264
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.31 E-value=0.012 Score=54.08 Aligned_cols=107 Identities=19% Similarity=0.241 Sum_probs=60.3
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHH
Q 010649 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~ 217 (505)
.+++.+|+|+|||-. +-++...+.... .+.+|+++... +......+.+..
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~-----~~~~v~y~~~~-~f~~~~~~~~~~----------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQH-----PGKRVVYLSAE-EFIREFADALRD----------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHC-----TTS-EEEEEHH-HHHHHHHHHHHT-----------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhcc-----ccccceeecHH-HHHHHHHHHHHc-----------------------
Confidence 489999999999974 444444444321 24567776653 444333333322
Q ss_pred HHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCC-CHHHHHHHHHhcC-CCCceEEecCCChHHH
Q 010649 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIR-PDRQTLYWSATWPKEV 291 (505)
Q Consensus 218 ~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~-~~~~~~~il~~~~-~~~~~v~~SAT~~~~~ 291 (505)
...+.+.+. +...++|+||++|.+.... +...+..++..+. ...++|+.|...|.++
T Consensus 86 ----------~~~~~~~~~-------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 86 ----------GEIEEFKDR-------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp ----------TSHHHHHHH-------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred ----------ccchhhhhh-------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 111122222 4468899999999987532 2344555555543 4567777776766654
No 265
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.29 E-value=0.014 Score=59.41 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=15.1
Q ss_pred EEEEccCCCchHHHHHH
Q 010649 139 LIGIAETGSGKTLAYLL 155 (505)
Q Consensus 139 ~li~a~TGsGKT~~~~~ 155 (505)
+|+.+|.|+|||.++.+
T Consensus 43 ~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 43 YIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 69999999999988665
No 266
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.29 E-value=0.044 Score=47.31 Aligned_cols=53 Identities=21% Similarity=0.224 Sum_probs=41.2
Q ss_pred cCCccEEEEcCcchhhcCC--CHHHHHHHHHhcCCCCceEEecCCChHHHHHHHH
Q 010649 244 LRRVTYLVLDEADRMLDMG--FEPQIKKILSQIRPDRQTLYWSATWPKEVEHLAR 296 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~~~--~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~ 296 (505)
...+++||+||+-.....+ -...+..+++..++...+|+.+-.+|+++.+.+.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 4578999999999876655 3567777888877788888888888888877654
No 267
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.28 E-value=0.069 Score=54.70 Aligned_cols=113 Identities=12% Similarity=0.185 Sum_probs=59.8
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHH
Q 010649 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~ 217 (505)
.+++.+|+|+|||..+. ++...+... ..+.+++++... .+..+....+.. .
T Consensus 132 ~l~lyG~~G~GKTHLl~-ai~~~l~~~-----~~~~~v~yi~~~-~f~~~~~~~~~~---~------------------- 182 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQ-SIGNYVVQN-----EPDLRVMYITSE-KFLNDLVDSMKE---G------------------- 182 (440)
T ss_pred eEEEEcCCCCcHHHHHH-HHHHHHHHh-----CCCCeEEEEEHH-HHHHHHHHHHhc---c-------------------
Confidence 58999999999997643 344444432 114567777643 343333332211 0
Q ss_pred HHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCC-CHHHHHHHHHhcC-CCCceEEecCCChHHHHHHH
Q 010649 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIR-PDRQTLYWSATWPKEVEHLA 295 (505)
Q Consensus 218 ~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~-~~~~~~~il~~~~-~~~~~v~~SAT~~~~~~~~~ 295 (505)
+.+.+...+. .++++|++||+|.+.+.. ....+..++..+. ...++|+.|...|..+..+.
T Consensus 183 -----------~~~~f~~~~~------~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~ 245 (440)
T PRK14088 183 -----------KLNEFREKYR------KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQ 245 (440)
T ss_pred -----------cHHHHHHHHH------hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHH
Confidence 0111211111 246799999999886542 2233444444432 34566665656666555443
Q ss_pred H
Q 010649 296 R 296 (505)
Q Consensus 296 ~ 296 (505)
.
T Consensus 246 ~ 246 (440)
T PRK14088 246 D 246 (440)
T ss_pred H
Confidence 3
No 268
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.28 E-value=0.072 Score=54.84 Aligned_cols=40 Identities=13% Similarity=0.181 Sum_probs=26.3
Q ss_pred cCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
..+.+++|+||+|.+.... .+.+.+.++..++...+|+.+
T Consensus 114 ~~~~KVvIIDEah~Ls~~A-~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSA-FNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred cCCceEEEEeChHhCCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 4578999999999887544 344555566555555555544
No 269
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.27 E-value=0.013 Score=60.95 Aligned_cols=149 Identities=18% Similarity=0.151 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhc-----C----CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 010649 124 PIQAQGWPMALK-----G----RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (505)
Q Consensus 124 ~~Q~~~i~~~l~-----~----~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~ 194 (505)
|||.-.+..++- + +.+++.-|=+-|||......++..+.-. ...+..+++++++++-|..+++.+.+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~----g~~~~~i~~~A~~~~QA~~~f~~~~~ 76 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD----GEPGAEIYCAANTRDQAKIVFDEAKK 76 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC----CccCceEEEEeCCHHHHHHHHHHHHH
Confidence 678877776651 2 3488888999999976554444444432 22367899999999999999999888
Q ss_pred hcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHcc--CCccCCccEEEEcCcchhhcCCCHHHHHHHHH
Q 010649 195 FGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH--NTNLRRVTYLVLDEADRMLDMGFEPQIKKILS 272 (505)
Q Consensus 195 ~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~--~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~ 272 (505)
+........... ....... ....|.....+.++..+... ...-.+.+++|+||+|.+.+......++.-..
T Consensus 77 ~i~~~~~l~~~~------~~~~~~~-~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~ 149 (477)
T PF03354_consen 77 MIEASPELRKRK------KPKIIKS-NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMG 149 (477)
T ss_pred HHHhChhhccch------hhhhhhh-hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhc
Confidence 754422110000 0000000 01123322222222222221 22233578999999999876433334433333
Q ss_pred hcCCCCceEEec
Q 010649 273 QIRPDRQTLYWS 284 (505)
Q Consensus 273 ~~~~~~~~v~~S 284 (505)
. +++++++..|
T Consensus 150 ~-r~~pl~~~IS 160 (477)
T PF03354_consen 150 A-RPNPLIIIIS 160 (477)
T ss_pred c-CCCceEEEEe
Confidence 3 3566665554
No 270
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.26 E-value=0.022 Score=61.79 Aligned_cols=86 Identities=19% Similarity=0.242 Sum_probs=69.9
Q ss_pred HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHh----CCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-ccccc
Q 010649 333 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAARG 407 (505)
Q Consensus 333 ~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~-~~~~G 407 (505)
.+..++.....+.+++|.++|+.-|...++.+++ .++++..+||+++..+|..+++.+.+|+.+|+|+|. .+...
T Consensus 299 a~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~ 378 (681)
T PRK10917 299 AALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDD 378 (681)
T ss_pred HHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhccc
Confidence 3344444455567999999999999888777654 468899999999999999999999999999999995 55667
Q ss_pred CCCCCCCEEEE
Q 010649 408 LDVKDVKYVIN 418 (505)
Q Consensus 408 idi~~~~~Vi~ 418 (505)
+.++++.+||.
T Consensus 379 v~~~~l~lvVI 389 (681)
T PRK10917 379 VEFHNLGLVII 389 (681)
T ss_pred chhcccceEEE
Confidence 78888888773
No 271
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.25 E-value=0.035 Score=58.39 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=27.9
Q ss_pred cCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCC
Q 010649 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT 286 (505)
..+++++||||+|.|.... .+.+.+.++.-+....+|+.|--
T Consensus 122 ~gr~KViIIDEah~Ls~~A-aNALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHA-FNAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred cCCceEEEEEChHhcCHHH-HHHHHHhhccCCCCceEEEEeCC
Confidence 3468899999999987654 34455555555556666665543
No 272
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.24 E-value=0.046 Score=56.91 Aligned_cols=39 Identities=13% Similarity=0.121 Sum_probs=27.4
Q ss_pred CCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
.+++++||||+|.|.... .+.+.+.++..++...+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a-~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHS-FNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHH-HHHHHHHHhccCCCeEEEEEE
Confidence 467899999999987654 345556666666666666654
No 273
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.23 E-value=0.025 Score=52.44 Aligned_cols=43 Identities=14% Similarity=0.276 Sum_probs=26.1
Q ss_pred CccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCc-eEEecCCChH
Q 010649 246 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQ-TLYWSATWPK 289 (505)
Q Consensus 246 ~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~-~v~~SAT~~~ 289 (505)
..++||+||+|.+.... ...+..++........ +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~~-~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDAQ-QIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCchH-HHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 45689999999875432 4445555555443333 4666766543
No 274
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.20 E-value=0.024 Score=53.86 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=16.0
Q ss_pred CcEEEEccCCCchHHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~ 155 (505)
.++++.+|+|+|||..+-+
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 4689999999999987654
No 275
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.20 E-value=0.026 Score=61.09 Aligned_cols=71 Identities=18% Similarity=0.112 Sum_probs=52.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcC
Q 010649 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~ 197 (505)
.|++-|.+++... ...++|.|..|||||.+.+. -+.++.... .-...++|+|+.|+..|.++.+.+.+...
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~-Ria~Li~~~---~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITN-KIAHLIRGC---GYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHH-HHHHHHHhc---CCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 4788999998753 46789999999999988444 444544321 11244699999999999999999987643
No 276
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.19 E-value=0.07 Score=54.25 Aligned_cols=109 Identities=14% Similarity=0.151 Sum_probs=57.6
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHH
Q 010649 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~ 217 (505)
.+++.+++|+|||..+ ..+...+... ..+..++++.. ..+..++...+..
T Consensus 138 ~l~l~G~~G~GKThL~-~ai~~~l~~~-----~~~~~v~yi~~-~~~~~~~~~~~~~----------------------- 187 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL-HAIGNEILEN-----NPNAKVVYVSS-EKFTNDFVNALRN----------------------- 187 (405)
T ss_pred eEEEECCCCCcHHHHH-HHHHHHHHHh-----CCCCcEEEEEH-HHHHHHHHHHHHc-----------------------
Confidence 4789999999999764 3344554432 11455777654 3444333222211
Q ss_pred HHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCC-CHHHHHHHHHhc-CCCCceEEecCCChHHHHH
Q 010649 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQI-RPDRQTLYWSATWPKEVEH 293 (505)
Q Consensus 218 ~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~-~~~~~~~il~~~-~~~~~~v~~SAT~~~~~~~ 293 (505)
+ +.+.+...+ .++++|||||+|.+.... ....+..++..+ ....++|+.|...|..+..
T Consensus 188 ----~------~~~~~~~~~-------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~ 248 (405)
T TIGR00362 188 ----N------KMEEFKEKY-------RSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPG 248 (405)
T ss_pred ----C------CHHHHHHHH-------HhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhh
Confidence 0 112222222 246799999999876542 122334444433 3455666655545554443
No 277
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.16 E-value=0.053 Score=57.62 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=25.5
Q ss_pred CCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEe
Q 010649 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYW 283 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~ 283 (505)
.+++++||||+|+|.... .+.+.++++.-+....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEEe
Confidence 467899999999987654 44555566655555555554
No 278
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.11 E-value=0.025 Score=58.54 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=18.3
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHh
Q 010649 138 DLIGIAETGSGKTLAYLLPAIVHVN 162 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~~~l~~l~ 162 (505)
.+|+++|.|+|||.++.+ +...+.
T Consensus 45 a~Lf~Gp~G~GKTT~Ari-lAk~Ln 68 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARI-IAKAVN 68 (507)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHhc
Confidence 589999999999988665 344443
No 279
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.10 E-value=0.039 Score=53.95 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=29.4
Q ss_pred CcHHHHHHHHHHhcC--C---cEEEEccCCCchHHHHHHHHHHHHh
Q 010649 122 PTPIQAQGWPMALKG--R---DLIGIAETGSGKTLAYLLPAIVHVN 162 (505)
Q Consensus 122 ~~~~Q~~~i~~~l~~--~---~~li~a~TGsGKT~~~~~~~l~~l~ 162 (505)
++|||...|..+.+. + .+++.+|.|.|||..+.. +...+.
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~-~a~~ll 46 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARF-AAQALL 46 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHH-HHHHHc
Confidence 378999999887742 2 488999999999987665 334443
No 280
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.07 E-value=0.026 Score=55.26 Aligned_cols=40 Identities=10% Similarity=0.149 Sum_probs=27.0
Q ss_pred CccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecC
Q 010649 246 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 285 (505)
Q Consensus 246 ~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SA 285 (505)
..++|||||+|.+........+..+++..+...++|+.+.
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 4679999999988433334556666777666666666443
No 281
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.07 E-value=0.023 Score=57.26 Aligned_cols=33 Identities=18% Similarity=0.133 Sum_probs=26.0
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCCCchHHHHH
Q 010649 122 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 122 ~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~ 154 (505)
+.......+..+..++++++.+|+|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 444555666777788999999999999998754
No 282
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.06 E-value=0.031 Score=57.35 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=60.5
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHH
Q 010649 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~ 217 (505)
.+++.+++|+|||... -++...+... ..+.+++++.+ .++..++...+..-.
T Consensus 143 pl~i~G~~G~GKTHLl-~Ai~~~l~~~-----~~~~~v~yv~~-~~f~~~~~~~l~~~~--------------------- 194 (450)
T PRK14087 143 PLFIYGESGMGKTHLL-KAAKNYIESN-----FSDLKVSYMSG-DEFARKAVDILQKTH--------------------- 194 (450)
T ss_pred ceEEECCCCCcHHHHH-HHHHHHHHHh-----CCCCeEEEEEH-HHHHHHHHHHHHHhh---------------------
Confidence 4889999999999643 3344444331 12456777665 456555554443200
Q ss_pred HHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCC-CHHHHHHHHHhcC-CCCceEEecCCChHHH
Q 010649 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIR-PDRQTLYWSATWPKEV 291 (505)
Q Consensus 218 ~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~-~~~~~~~il~~~~-~~~~~v~~SAT~~~~~ 291 (505)
+.+..+.. .+.++++||+||+|.+.... ....+..++..+. ...|+|+.|-..|...
T Consensus 195 -------------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 -------------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred -------------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 11111111 13467899999999876432 2344555555543 3456776666666544
No 283
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.05 E-value=0.055 Score=52.71 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=30.6
Q ss_pred cCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCC
Q 010649 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT 286 (505)
....+++|+|+||.|.... .+.+.++++.-++...+++.|..
T Consensus 105 ~g~~KV~iI~~a~~m~~~A-aNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEAA-ANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred cCCceEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEEECC
Confidence 3567899999999998654 66777777776666666665544
No 284
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.05 E-value=0.037 Score=58.34 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=26.0
Q ss_pred CCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
.+.+++||||+|+|.... ...+.++++..+....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEEEE
Confidence 467899999999887544 445666666655555555544
No 285
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.04 E-value=0.071 Score=53.74 Aligned_cols=54 Identities=13% Similarity=0.262 Sum_probs=35.9
Q ss_pred CccEEEEcCcchhhcC-CCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHc
Q 010649 246 RVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYL 299 (505)
Q Consensus 246 ~~~~lVlDEah~~~~~-~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~ 299 (505)
.+++||+|=+-++... .....+..+.....++..++.++||...+....++.|.
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~ 236 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFK 236 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHH
Confidence 4678888888664322 13455556666666777788889988766666666663
No 286
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.04 E-value=0.12 Score=51.08 Aligned_cols=129 Identities=20% Similarity=0.218 Sum_probs=65.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEc-cc-HH-HHHHHHHHHHHhcCCCCceEEEEECCCCc
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA-PT-RE-LAVQIQQESTKFGASSKIKSTCIYGGVPK 212 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~-Pt-~~-La~Q~~~~~~~~~~~~~i~~~~~~gg~~~ 212 (505)
++.+++++|+|+|||....-.+ ..+..+ +.++.+++ .+ |. -+.||...... .++.+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA-~~l~~~-------g~~V~lItaDtyR~gAveQLk~yae~----lgvpv--------- 264 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLG-WQLLKQ-------NRTVGFITTDTFRSGAVEQFQGYADK----LDVEL--------- 264 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHH-HHHHHc-------CCeEEEEeCCccCccHHHHHHHHhhc----CCCCE---------
Confidence 3457899999999998754433 233222 34454443 22 22 23344433332 22211
Q ss_pred hHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcC-CCHHHHHHHHHhcCCCCceEEecCCCh-HH
Q 010649 213 GPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWP-KE 290 (505)
Q Consensus 213 ~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~-~~~~~~~~il~~~~~~~~~v~~SAT~~-~~ 290 (505)
.+..+|..+.+.+.... ...++++|++|=+=+.... .....+..+.....++.-++.+|||.. .+
T Consensus 265 ------------~~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d 331 (407)
T PRK12726 265 ------------IVATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSAD 331 (407)
T ss_pred ------------EecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHH
Confidence 12245555555443211 1245788999988764322 123444455555555555667787654 34
Q ss_pred HHHHHHHH
Q 010649 291 VEHLARQY 298 (505)
Q Consensus 291 ~~~~~~~~ 298 (505)
+...+..|
T Consensus 332 ~~~i~~~f 339 (407)
T PRK12726 332 VMTILPKL 339 (407)
T ss_pred HHHHHHhc
Confidence 55554444
No 287
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.02 E-value=0.075 Score=57.51 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=16.9
Q ss_pred EEEEccCCCchHHHHHHHHHHHHh
Q 010649 139 LIGIAETGSGKTLAYLLPAIVHVN 162 (505)
Q Consensus 139 ~li~a~TGsGKT~~~~~~~l~~l~ 162 (505)
++|.++||+|||++... ++..+.
T Consensus 784 LYIyG~PGTGKTATVK~-VLrELq 806 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYS-VIQLLQ 806 (1164)
T ss_pred EEEECCCCCCHHHHHHH-HHHHHH
Confidence 35999999999988444 555553
No 288
>PTZ00293 thymidine kinase; Provisional
Probab=96.01 E-value=0.055 Score=48.91 Aligned_cols=38 Identities=18% Similarity=0.119 Sum_probs=25.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEccc
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt 181 (505)
|+=.++.+||+||||.-.+- .+..... .+.+++++-|.
T Consensus 4 G~i~vi~GpMfSGKTteLLr-~i~~y~~-------ag~kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMR-LVKRFTY-------SEKKCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHHHHH-HHHHHHH-------cCCceEEEEec
Confidence 33457899999999976443 3333332 15668998886
No 289
>PLN03025 replication factor C subunit; Provisional
Probab=96.00 E-value=0.078 Score=51.99 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=24.8
Q ss_pred CccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 246 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 246 ~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
..+++|+||+|.|.... ...+.++++...+...+++.+
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEEEe
Confidence 57899999999986543 455556666554555555433
No 290
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.98 E-value=0.032 Score=54.75 Aligned_cols=137 Identities=12% Similarity=0.050 Sum_probs=70.4
Q ss_pred CCcHHHHHHHHHHh----cCC---cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 010649 121 EPTPIQAQGWPMAL----KGR---DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 193 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l----~~~---~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~ 193 (505)
.++|||...|..+. +++ -.++.+|.|.||+..+.. +...+........ .+ .=.|+ .|+
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~-~A~~LlC~~~~~~--~~--Cg~C~----------sC~ 66 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYA-LSRWLMCQQPQGH--KS--CGHCR----------GCQ 66 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHH-HHHHHcCCCCCCC--CC--CCCCH----------HHH
Confidence 35788988887765 333 478999999999987654 3444443211100 00 00122 222
Q ss_pred Hh--cCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHH
Q 010649 194 KF--GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKIL 271 (505)
Q Consensus 194 ~~--~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il 271 (505)
.+ +...++... ...... ..|-|-....+.+.+.. .......+++|||+||.|.... .+.+.+++
T Consensus 67 ~~~~g~HPD~~~i--~p~~~~----------~~I~idqiR~l~~~~~~-~~~~g~~kV~iI~~ae~m~~~A-aNaLLKtL 132 (334)
T PRK07993 67 LMQAGTHPDYYTL--TPEKGK----------SSLGVDAVREVTEKLYE-HARLGGAKVVWLPDAALLTDAA-ANALLKTL 132 (334)
T ss_pred HHHcCCCCCEEEE--eccccc----------ccCCHHHHHHHHHHHhh-ccccCCceEEEEcchHhhCHHH-HHHHHHHh
Confidence 22 122222221 111000 01111111122233322 2234578899999999998654 66777777
Q ss_pred HhcCCCCceEEecCC
Q 010649 272 SQIRPDRQTLYWSAT 286 (505)
Q Consensus 272 ~~~~~~~~~v~~SAT 286 (505)
+.-++...+++.|.-
T Consensus 133 EEPp~~t~fiL~t~~ 147 (334)
T PRK07993 133 EEPPENTWFFLACRE 147 (334)
T ss_pred cCCCCCeEEEEEECC
Confidence 776555655655544
No 291
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.95 E-value=0.045 Score=59.56 Aligned_cols=70 Identities=17% Similarity=0.077 Sum_probs=51.9
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcC
Q 010649 122 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (505)
Q Consensus 122 ~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~ 197 (505)
|+|-|.+++.. ...+++|.|..|||||.+.+- -+.++.... ......+|+|+.|+..|.++.+.+.+...
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~-ri~~ll~~~---~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITN-KIAYLIQNC---GYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHH-HHHHHHHhc---CCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 68889998865 346899999999999988444 444444321 11245699999999999999999887653
No 292
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.94 E-value=0.16 Score=48.40 Aligned_cols=55 Identities=25% Similarity=0.373 Sum_probs=35.6
Q ss_pred CCccEEEEcCcchhhcC-CCHHHHHHHHHhcC------CCCceEEecCCChHHHHHHHHHHc
Q 010649 245 RRVTYLVLDEADRMLDM-GFEPQIKKILSQIR------PDRQTLYWSATWPKEVEHLARQYL 299 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~-~~~~~~~~il~~~~------~~~~~v~~SAT~~~~~~~~~~~~~ 299 (505)
.++++||+|=+-+.... .....+.++.+..+ ++-.++.++||...+....+..+.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFN 214 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHH
Confidence 45788999988775432 22345566665555 666788889997765555555554
No 293
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.93 E-value=0.084 Score=56.16 Aligned_cols=40 Identities=10% Similarity=0.086 Sum_probs=26.5
Q ss_pred cCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
..+.+++||||+|.|.... ...+.+.+...+....+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 3467899999999876533 344556666555566666554
No 294
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.92 E-value=0.15 Score=53.84 Aligned_cols=69 Identities=10% Similarity=0.021 Sum_probs=46.8
Q ss_pred CcHHHHHHHHHH---hcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcC
Q 010649 122 PTPIQAQGWPMA---LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (505)
Q Consensus 122 ~~~~Q~~~i~~~---l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~ 197 (505)
|.|.=.+-|+.+ ++.+-.++.+|=|.|||.+..+.+. .+... .+.+++|.+|...-+.++.+.+.++..
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~-~La~f------~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILA-AMISF------LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHH-HHHHh------cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 344444444443 3456688899999999987554333 33321 156799999999999888888776654
No 295
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.89 E-value=0.14 Score=45.21 Aligned_cols=101 Identities=19% Similarity=0.234 Sum_probs=57.4
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHH
Q 010649 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 218 (505)
Q Consensus 139 ~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~ 218 (505)
.++.+||.||||...+- .+.+... .+.++++..|...- ++. ...+.-.-|.
T Consensus 7 ~~i~gpM~SGKT~eLl~-r~~~~~~-------~g~~v~vfkp~iD~---------R~~----~~~V~Sr~G~-------- 57 (201)
T COG1435 7 EFIYGPMFSGKTEELLR-RARRYKE-------AGMKVLVFKPAIDT---------RYG----VGKVSSRIGL-------- 57 (201)
T ss_pred EEEEccCcCcchHHHHH-HHHHHHH-------cCCeEEEEeccccc---------ccc----cceeeeccCC--------
Confidence 57899999999987333 3333333 26779998885211 111 1111111121
Q ss_pred HhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHH
Q 010649 219 LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILS 272 (505)
Q Consensus 219 ~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~ 272 (505)
+..-++|-.+..+.+.+......+ .+++|.+|||+-+... .-.++.++.+
T Consensus 58 --~~~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF~~~~-~v~~l~~lad 107 (201)
T COG1435 58 --SSEAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQFFDEE-LVYVLNELAD 107 (201)
T ss_pred --cccceecCChHHHHHHHHhcccCC-CcCEEEEehhHhCCHH-HHHHHHHHHh
Confidence 113566677777778777644333 2889999999975432 2344444444
No 296
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.88 E-value=0.026 Score=57.26 Aligned_cols=146 Identities=12% Similarity=0.220 Sum_probs=78.9
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHH-HHHHHHHHHHHhcCCCCceEEEEECCCCchHHH
Q 010649 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE-LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~-La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 216 (505)
-.++.+..|||||.++.+-++..+... ..+.+++++-|+.. |..-+..++.......++....-....+. .+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~-----~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i 75 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN-----KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI 75 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc-----CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE
Confidence 367889999999998887777777664 12567999989875 66666666665433333221111111100 00
Q ss_pred HHHhcCCcEEEeCh-HHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCC--CCceEEecCCChHHHHH
Q 010649 217 RDLQKGVEIVIATP-GRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRP--DRQTLYWSATWPKEVEH 293 (505)
Q Consensus 217 ~~~~~~~~Iiv~T~-~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~--~~~~v~~SAT~~~~~~~ 293 (505)
.....+..|++..- +...+ + .....++++.+|||..+.. ..+..++..++. ....+++|.||+....-
T Consensus 76 ~~~~~g~~i~f~g~~d~~~~-i----k~~~~~~~~~idEa~~~~~----~~~~~l~~rlr~~~~~~~i~~t~NP~~~~~w 146 (396)
T TIGR01547 76 KILNTGKKFIFKGLNDKPNK-L----KSGAGIAIIWFEEASQLTF----EDIKELIPRLRETGGKKFIIFSSNPESPLHW 146 (396)
T ss_pred EecCCCeEEEeecccCChhH-h----hCcceeeeehhhhhhhcCH----HHHHHHHHHhhccCCccEEEEEcCcCCCccH
Confidence 00011334555443 21111 1 1223368999999998853 345555555542 22247888887653333
Q ss_pred HHHHHc
Q 010649 294 LARQYL 299 (505)
Q Consensus 294 ~~~~~~ 299 (505)
+.+.|.
T Consensus 147 ~~~~f~ 152 (396)
T TIGR01547 147 VKKRFI 152 (396)
T ss_pred HHHHHH
Confidence 333333
No 297
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.88 E-value=0.071 Score=49.50 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=32.9
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
.+.-+++.+++|+|||..++-.+. .+..+ +.++++++.. +-..+..+.+.+++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~-~~~~~-------g~~~~yi~~e-~~~~~~~~~~~~~g 75 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAY-GFLQN-------GYSVSYVSTQ-LTTTEFIKQMMSLG 75 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH-HHHhC-------CCcEEEEeCC-CCHHHHHHHHHHhC
Confidence 456789999999999986444333 33221 4568888843 33345555555544
No 298
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.87 E-value=0.046 Score=53.63 Aligned_cols=40 Identities=15% Similarity=0.259 Sum_probs=28.2
Q ss_pred CCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecC
Q 010649 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 285 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SA 285 (505)
...+++|+||||.|.... ...+.+.+..-+.+..+++.+-
T Consensus 108 ~~~kviiidead~mt~~A-~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTEDA-ANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhHHH-HHHHHHHhccCCCCeEEEEEcC
Confidence 578899999999987642 5666666666656666665553
No 299
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.84 E-value=0.08 Score=52.87 Aligned_cols=39 Identities=13% Similarity=0.116 Sum_probs=24.2
Q ss_pred CCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
.+.+++|+||+|.+.... ...+.+.+...++...+++.+
T Consensus 118 ~~~kviIIDEa~~l~~~a-~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHS-FNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHH-HHHHHHHHhcCCCCeEEEEEc
Confidence 467899999999987543 233444455444455555544
No 300
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.83 E-value=0.084 Score=54.21 Aligned_cols=92 Identities=23% Similarity=0.194 Sum_probs=57.1
Q ss_pred CCCCHH-HHHHHHHcCCCCCcH----HHHHHHHHHhc--CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 010649 104 VGFPDY-VMQEISKAGFFEPTP----IQAQGWPMALK--GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (505)
Q Consensus 104 ~~l~~~-~~~~l~~~~~~~~~~----~Q~~~i~~~l~--~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vl 176 (505)
.+..++ ++..|+++.-.+++. +|.+-=..+.. ++-+++++..|||||.+++--+...+.... ..-.+..||
T Consensus 187 ~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R--~~l~~k~vl 264 (747)
T COG3973 187 TGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYR--GPLQAKPVL 264 (747)
T ss_pred CchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccc--cccccCceE
Confidence 344444 445666665555554 35554444544 345899999999999987654333333221 111233499
Q ss_pred EEcccHHHHHHHHHHHHHhcC
Q 010649 177 VLAPTRELAVQIQQESTKFGA 197 (505)
Q Consensus 177 il~Pt~~La~Q~~~~~~~~~~ 197 (505)
|+.|.+.+..-+...+=.++.
T Consensus 265 vl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 265 VLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred EEcCcHHHHHHHHHhchhhcc
Confidence 999999998877777766653
No 301
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.83 E-value=0.037 Score=59.55 Aligned_cols=85 Identities=19% Similarity=0.254 Sum_probs=69.3
Q ss_pred HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHh----CCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-cccccC
Q 010649 334 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAARGL 408 (505)
Q Consensus 334 l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~-~~~~Gi 408 (505)
+..++.....+.+++|.++|+.-|...++.+++ .++++..+||+++..+|..+++...+|+.+|+|+|. .+...+
T Consensus 274 ~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~ 353 (630)
T TIGR00643 274 ALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKV 353 (630)
T ss_pred HHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccc
Confidence 344444455567999999999999888777664 378899999999999999999999999999999994 455677
Q ss_pred CCCCCCEEEE
Q 010649 409 DVKDVKYVIN 418 (505)
Q Consensus 409 di~~~~~Vi~ 418 (505)
++.++.+||.
T Consensus 354 ~~~~l~lvVI 363 (630)
T TIGR00643 354 EFKRLALVII 363 (630)
T ss_pred cccccceEEE
Confidence 8888888773
No 302
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.82 E-value=0.086 Score=57.50 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=25.2
Q ss_pred CCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEe
Q 010649 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYW 283 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~ 283 (505)
.+++++||||||+|.... ...+.++++..+....+|+.
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE
Confidence 467899999999986433 34555566655555555554
No 303
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.81 E-value=0.045 Score=48.60 Aligned_cols=146 Identities=18% Similarity=0.080 Sum_probs=77.3
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchH
Q 010649 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 214 (505)
....+++..++|.|||.+++--++..+.. +.+|+|+-=.+--. -..+...+....++.... .+....-
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~--------G~~V~ivQFlKg~~--~~GE~~~l~~l~~v~~~~--~g~~~~~ 88 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGH--------GKKVGVVQFIKGAW--STGERNLLEFGGGVEFHV--MGTGFTW 88 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHC--------CCeEEEEEEecCCC--ccCHHHHHhcCCCcEEEE--CCCCCcc
Confidence 45678999999999999988766666555 67788875433210 011111111111222221 1111000
Q ss_pred HHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCC--HHHHHHHHHhcCCCCceEEecCCChHHHH
Q 010649 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF--EPQIKKILSQIRPDRQTLYWSATWPKEVE 292 (505)
Q Consensus 215 ~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~--~~~~~~il~~~~~~~~~v~~SAT~~~~~~ 292 (505)
. ....+--+.......+.... ...-..+++||+||+-..++.++ ...+..++...++...+|+.--.+|+++.
T Consensus 89 ~----~~~~~e~~~~~~~~~~~a~~-~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Li 163 (191)
T PRK05986 89 E----TQDRERDIAAAREGWEEAKR-MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELI 163 (191)
T ss_pred c----CCCcHHHHHHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHH
Confidence 0 00000000001111111111 12235689999999998888764 45677777776667777776667788777
Q ss_pred HHHHH
Q 010649 293 HLARQ 297 (505)
Q Consensus 293 ~~~~~ 297 (505)
+.+..
T Consensus 164 e~ADl 168 (191)
T PRK05986 164 EAADL 168 (191)
T ss_pred HhCch
Confidence 76553
No 304
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.77 E-value=0.078 Score=44.07 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=13.5
Q ss_pred EEEEccCCCchHHHHH
Q 010649 139 LIGIAETGSGKTLAYL 154 (505)
Q Consensus 139 ~li~a~TGsGKT~~~~ 154 (505)
+++.+|+|+|||..+-
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 5889999999998644
No 305
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.76 E-value=0.059 Score=52.34 Aligned_cols=136 Identities=15% Similarity=0.175 Sum_probs=70.7
Q ss_pred CCcHHHHHHHHHHh----cCC---cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 010649 121 EPTPIQAQGWPMAL----KGR---DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 193 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l----~~~---~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~ 193 (505)
.++|||...+..+. +++ -.++.+|.|.||+..+.. +...+....... .+ |. ....+.
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~-~a~~llC~~~~~---~~-----Cg-------~C~sC~ 66 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVEL-FSRALLCQNYQS---EA-----CG-------FCHSCE 66 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHcCCCCCC---CC-----CC-------CCHHHH
Confidence 46888888887765 333 489999999999977554 344444322110 10 11 012222
Q ss_pred Hh--cCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHH
Q 010649 194 KF--GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKIL 271 (505)
Q Consensus 194 ~~--~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il 271 (505)
.+ +...++... ..... +..|-|-....+.+.+.. .......+++|||+||+|.... .+.+.+++
T Consensus 67 ~~~~g~HPD~~~i--~p~~~----------~~~I~vdqiR~l~~~~~~-~~~~~~~kV~iI~~ae~m~~~A-aNaLLKtL 132 (319)
T PRK06090 67 LMQSGNHPDLHVI--KPEKE----------GKSITVEQIRQCNRLAQE-SSQLNGYRLFVIEPADAMNESA-SNALLKTL 132 (319)
T ss_pred HHHcCCCCCEEEE--ecCcC----------CCcCCHHHHHHHHHHHhh-CcccCCceEEEecchhhhCHHH-HHHHHHHh
Confidence 22 122222222 11100 001111111122222222 2234567899999999997554 66777777
Q ss_pred HhcCCCCceEEecCC
Q 010649 272 SQIRPDRQTLYWSAT 286 (505)
Q Consensus 272 ~~~~~~~~~v~~SAT 286 (505)
+.-+++..+|+.|..
T Consensus 133 EEPp~~t~fiL~t~~ 147 (319)
T PRK06090 133 EEPAPNCLFLLVTHN 147 (319)
T ss_pred cCCCCCeEEEEEECC
Confidence 776666666666555
No 306
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.70 E-value=0.27 Score=47.73 Aligned_cols=108 Identities=17% Similarity=0.163 Sum_probs=57.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 215 (505)
++.+++.+++|+|||..+. ++...+... +..++++.- .+|+.++...+..
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l~~~-------g~~v~~~~~-~~l~~~lk~~~~~--------------------- 205 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANELAKK-------GVSSTLLHF-PEFIRELKNSISD--------------------- 205 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHc-------CCCEEEEEH-HHHHHHHHHHHhc---------------------
Confidence 4579999999999997643 344444432 444555432 2454444332210
Q ss_pred HHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHH--HHHHHHHhc-CCCCceEEecCCChHHHH
Q 010649 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEP--QIKKILSQI-RPDRQTLYWSATWPKEVE 292 (505)
Q Consensus 216 ~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~--~~~~il~~~-~~~~~~v~~SAT~~~~~~ 292 (505)
.+...+++. +.++++|||||.....-..+.. .+..|+... .....+++.|--...++.
T Consensus 206 ------------~~~~~~l~~-------l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~ 266 (306)
T PRK08939 206 ------------GSVKEKIDA-------VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELE 266 (306)
T ss_pred ------------CcHHHHHHH-------hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHH
Confidence 011122222 4578899999998543332332 334454432 355667776665444443
No 307
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.64 E-value=0.049 Score=51.88 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=23.7
Q ss_pred CCcHHHHHHHHHHh----cCC-cEEEEccCCCchHHHHH
Q 010649 121 EPTPIQAQGWPMAL----KGR-DLIGIAETGSGKTLAYL 154 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l----~~~-~~li~a~TGsGKT~~~~ 154 (505)
.+++.+.+++..+. .+. .+++.+|+|+|||+.+.
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 45666667766543 223 48899999999998643
No 308
>PF13173 AAA_14: AAA domain
Probab=95.62 E-value=0.11 Score=43.23 Aligned_cols=38 Identities=18% Similarity=0.384 Sum_probs=26.2
Q ss_pred CccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCC
Q 010649 246 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (505)
Q Consensus 246 ~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT 286 (505)
.-.+|++||+|.+.+ +...+..++... ++.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccc
Confidence 456899999999864 577777777754 45565554433
No 309
>CHL00181 cbbX CbbX; Provisional
Probab=95.61 E-value=0.15 Score=48.95 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~ 155 (505)
+.++++.+|+|+|||.++-.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 44689999999999987664
No 310
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.61 E-value=0.081 Score=53.87 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.2
Q ss_pred cEEEEccCCCchHHHHHH
Q 010649 138 DLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~ 155 (505)
++++.+|+|+|||..+..
T Consensus 38 ~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 38 SMILWGPPGTGKTTLARI 55 (413)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 689999999999986543
No 311
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.61 E-value=0.14 Score=54.26 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=27.0
Q ss_pred cCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
..+.+++||||+|.|.... .+.+.++++..++...+|+.|
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 4578899999999887543 445666666655555555544
No 312
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.60 E-value=0.054 Score=50.59 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=37.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
|..+++.+++|+|||..++-.+...+.. +.++++++- .+-..|+.+.+..++
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~--------ge~~lyvs~-ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM--------GEPGIYVAL-EEHPVQVRRNMAQFG 72 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc--------CCcEEEEEe-eCCHHHHHHHHHHhC
Confidence 4678999999999998766545555433 556888884 456667777777665
No 313
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.59 E-value=0.07 Score=46.67 Aligned_cols=52 Identities=17% Similarity=0.311 Sum_probs=39.9
Q ss_pred CCccEEEEcCcchhhcCCC--HHHHHHHHHhcCCCCceEEecCCChHHHHHHHH
Q 010649 245 RRVTYLVLDEADRMLDMGF--EPQIKKILSQIRPDRQTLYWSATWPKEVEHLAR 296 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~~~--~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~ 296 (505)
..+++||+||+-..++.++ ...+..+++..++...+|+..-..|+++.+.+.
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 5789999999998877663 456777787777777878777778887777654
No 314
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.58 E-value=0.066 Score=56.45 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=15.7
Q ss_pred cEEEEccCCCchHHHHHH
Q 010649 138 DLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~ 155 (505)
.+|+.+|.|+|||.++.+
T Consensus 40 a~Lf~GPpG~GKTtiAri 57 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARI 57 (624)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 478899999999998765
No 315
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.58 E-value=0.22 Score=50.25 Aligned_cols=172 Identities=16% Similarity=0.112 Sum_probs=80.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 215 (505)
+..+.+++|||+|||......+-..+... +.....++.+.+.-.+ ..+++..++...++.+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~-----~~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~----------- 252 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRH-----GADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVR----------- 252 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-----CCCeEEEEecCCcchh--HHHHHHHHHHHcCCcee-----------
Confidence 44588999999999986443222222221 0122345555553222 12223333322222221
Q ss_pred HHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhc-CCCHHHHHHHHHhcCCCCceEEecCCC-hHHHHH
Q 010649 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATW-PKEVEH 293 (505)
Q Consensus 216 ~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~-~~~~~~~~~il~~~~~~~~~v~~SAT~-~~~~~~ 293 (505)
.+.++..+...+. .+.+.+++++|.+=+... .....++..+.....+...++.+|||. ...+.+
T Consensus 253 ----------~v~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~ 318 (420)
T PRK14721 253 ----------SIKDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDE 318 (420)
T ss_pred ----------cCCCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHH
Confidence 1223333322222 245678899998643221 111233333322233455678899996 444566
Q ss_pred HHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcc
Q 010649 294 LARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKK 355 (505)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~ 355 (505)
....|-..++ -...+...++..+.-.+++++... +-++..++...+
T Consensus 319 ~~~~f~~~~~--------------~~~I~TKlDEt~~~G~~l~~~~~~--~lPi~yvt~Gq~ 364 (420)
T PRK14721 319 VISAYQGHGI--------------HGCIITKVDEAASLGIALDAVIRR--KLVLHYVTNGQK 364 (420)
T ss_pred HHHHhcCCCC--------------CEEEEEeeeCCCCccHHHHHHHHh--CCCEEEEECCCC
Confidence 6655532211 111222334445566666666553 234555554443
No 316
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.58 E-value=0.065 Score=56.15 Aligned_cols=40 Identities=13% Similarity=0.104 Sum_probs=26.8
Q ss_pred cCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
..+.+++||||+|.|.... .+.+.+.++..+....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a-~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHH-HHHHHHHHhCCCCCEEEEEEe
Confidence 3567899999999887543 344555566655556566555
No 317
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.58 E-value=0.072 Score=53.49 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=27.0
Q ss_pred cCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCC
Q 010649 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT 286 (505)
....+++||||+|+|.... .+.+.++++.-++...+|+.|.+
T Consensus 115 ~~~~kViiIDead~m~~~a-anaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA-ANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred cCCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCCeEEEEECC
Confidence 3567899999999997543 35566666655445544444444
No 318
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.54 E-value=0.25 Score=49.53 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=32.0
Q ss_pred CCccEEEEcCcchhhc-CCCHHHHHHHHHhcC---CCCceEEecCCChH-HHHHHHHHH
Q 010649 245 RRVTYLVLDEADRMLD-MGFEPQIKKILSQIR---PDRQTLYWSATWPK-EVEHLARQY 298 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~-~~~~~~~~~il~~~~---~~~~~v~~SAT~~~-~~~~~~~~~ 298 (505)
..+++||+|=+-+... ......+..++.... +...++.+|||... ++.+.++.|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 4678999997765432 112334444454432 33467888999866 566666655
No 319
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.54 E-value=0.14 Score=51.88 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=19.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhc
Q 010649 137 RDLIGIAETGSGKTLAYLLPAIVHVNA 163 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~~~l~~l~~ 163 (505)
.++++.+|+|+|||.+.. .++..+..
T Consensus 56 ~~~lI~G~~GtGKT~l~~-~v~~~l~~ 81 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVK-KVFEELEE 81 (394)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 569999999999998633 35555543
No 320
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.53 E-value=0.1 Score=48.45 Aligned_cols=53 Identities=26% Similarity=0.345 Sum_probs=32.2
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
.|..+++.+++|+|||..++..+...+.. +..+++++. .+.+.++.+.+..++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--------g~~~~~is~-e~~~~~i~~~~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--------GDPVIYVTT-EESRESIIRQAAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEEEc-cCCHHHHHHHHHHhC
Confidence 35678999999999997655433333322 445777764 334455555555543
No 321
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.51 E-value=0.11 Score=54.75 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=27.4
Q ss_pred cCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
..+.+++||||+|.|.... .+.+.+.++..+....+|+.+
T Consensus 116 ~~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 3578899999999987654 445556666655555556555
No 322
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.49 E-value=0.049 Score=51.80 Aligned_cols=53 Identities=17% Similarity=0.200 Sum_probs=30.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCC---CCCCEEEEEcccHHHHHHHHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAP---GDGPIVLVLAPTRELAVQIQQEST 193 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~---~~~~~vlil~Pt~~La~Q~~~~~~ 193 (505)
.+++++++|+-|||... -......+.... ..-|.+++-+|...-....+..+-
T Consensus 62 p~lLivG~snnGKT~Ii----~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL 117 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII----ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAIL 117 (302)
T ss_pred CceEEecCCCCcHHHHH----HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHH
Confidence 47999999999999852 222222222111 123667777877655444454433
No 323
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.48 E-value=0.085 Score=55.92 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=27.8
Q ss_pred cCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
..+.+++||||+|.|.... .+.+.+.++..++...+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4577899999999987543 445555666666666666655
No 324
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.47 E-value=0.13 Score=55.80 Aligned_cols=94 Identities=19% Similarity=0.250 Sum_probs=72.1
Q ss_pred ChhHHHHHHHHHHHh-hcCCCeEEEEeCCcccHHHHHHHHHh-CCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 010649 326 SESQKYNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRM-DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 403 (505)
Q Consensus 326 ~~~~k~~~l~~~l~~-~~~~~~vlVF~~~~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~ 403 (505)
....|-...+..+.. ...+.++||.++++..+..+.+.|++ .+..+..+||+++..+|...+.+..+|+.+|+|+|..
T Consensus 171 TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrs 250 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARS 250 (679)
T ss_pred CCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccH
Confidence 334555554444433 23456899999999999999999976 4778999999999999999999999999999999964
Q ss_pred ccccCCCCCCCEEEEcC
Q 010649 404 AARGLDVKDVKYVINYD 420 (505)
Q Consensus 404 ~~~Gidi~~~~~Vi~~~ 420 (505)
+.. +.+.++.+||.-+
T Consensus 251 al~-~p~~~l~liVvDE 266 (679)
T PRK05580 251 ALF-LPFKNLGLIIVDE 266 (679)
T ss_pred Hhc-ccccCCCEEEEEC
Confidence 322 5567788777544
No 325
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.45 E-value=0.069 Score=61.95 Aligned_cols=123 Identities=18% Similarity=0.107 Sum_probs=76.4
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCc
Q 010649 122 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 201 (505)
Q Consensus 122 ~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i 201 (505)
+|+-|.++|. ..+.+++|.|..|||||.+.+--++..+... ....++|+|+=|+..|.++.+.+.+-.... +
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-----~~~~~il~~tFt~~aa~e~~~ri~~~l~~~-~ 73 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG-----VDIDRLLVVTFTNAAAREMKERIEEALQKA-L 73 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-----CCHhhEEEEeccHHHHHHHHHHHHHHHHHH-H
Confidence 5888999997 3578999999999999998665555555432 112459999999999998888877643210 0
Q ss_pred eEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCC--ccEEEEcCcch
Q 010649 202 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRR--VTYLVLDEADR 257 (505)
Q Consensus 202 ~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~--~~~lVlDEah~ 257 (505)
.- ........+.+..-...-|+|...+...+.+.....-+ ..+=|.||...
T Consensus 74 ~~-----~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 74 QQ-----EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred hc-----CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 00 00111112222233467899998876554433222212 24556888874
No 326
>PHA00729 NTP-binding motif containing protein
Probab=95.45 E-value=0.12 Score=47.25 Aligned_cols=77 Identities=14% Similarity=0.192 Sum_probs=39.4
Q ss_pred CcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcC-CCH----HHHHHHHHhcCCCCceEEecCCChHHHHHHHHH
Q 010649 223 VEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM-GFE----PQIKKILSQIRPDRQTLYWSATWPKEVEHLARQ 297 (505)
Q Consensus 223 ~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~-~~~----~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~ 297 (505)
...++.+.+.|.+.+........+++++|+||+-.-... .|. .....+...++.-.+++.+...-+.++...++.
T Consensus 59 ~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 59 QNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred CcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 345556666665655432222235678999994321111 111 112223333344455676776667777776665
Q ss_pred Hc
Q 010649 298 YL 299 (505)
Q Consensus 298 ~~ 299 (505)
-.
T Consensus 139 Rg 140 (226)
T PHA00729 139 KG 140 (226)
T ss_pred CC
Confidence 33
No 327
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.41 E-value=0.054 Score=51.72 Aligned_cols=40 Identities=30% Similarity=0.196 Sum_probs=26.2
Q ss_pred hcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc
Q 010649 134 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (505)
Q Consensus 134 l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P 180 (505)
..+.-+++.|++|+|||..++..+...+.. .+..+++++-
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-------~g~~vl~iS~ 67 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQ-------HGVRVGTISL 67 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-------cCceEEEEEc
Confidence 456678999999999997655433333222 1556888764
No 328
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.41 E-value=0.21 Score=52.23 Aligned_cols=40 Identities=13% Similarity=0.066 Sum_probs=26.8
Q ss_pred cCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
..+..++||||+|+|.... ...+.+.++..+....+|+.|
T Consensus 117 ~g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3467899999999987643 445556666655555555554
No 329
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.39 E-value=0.061 Score=48.61 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=26.5
Q ss_pred CCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCC
Q 010649 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT 286 (505)
.+.+.+|+||||.|.+-. ...+++..+......++.+...+
T Consensus 112 grhKIiILDEADSMT~gA-QQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTAGA-QQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CceeEEEeeccchhhhHH-HHHHHHHHHHHcccchhhhhhcc
Confidence 677899999999987642 45566665555444444444333
No 330
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.39 E-value=0.22 Score=53.15 Aligned_cols=39 Identities=18% Similarity=0.196 Sum_probs=23.1
Q ss_pred cCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEe
Q 010649 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYW 283 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~ 283 (505)
....++|||||+|.|.... ...+.+.+...++...+|+.
T Consensus 118 ~~~~kVvIIDEa~~L~~~a-~naLLk~LEepp~~tv~Il~ 156 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHAIFILA 156 (585)
T ss_pred cCCeEEEEEeChHhCCHHH-HHHHHHHHhcCCCCeEEEEE
Confidence 4567899999999886533 23344444444444434433
No 331
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.39 E-value=0.093 Score=53.79 Aligned_cols=88 Identities=22% Similarity=0.334 Sum_probs=52.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 215 (505)
+.-+++.+++|+|||...+. ++..+.. .+.+++|++-. +-..|+...+.+++....
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq-~a~~~a~-------~g~~vlYvs~E-es~~qi~~ra~rlg~~~~--------------- 135 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQ-VAARLAA-------AGGKVLYVSGE-ESASQIKLRAERLGLPSD--------------- 135 (446)
T ss_pred CEEEEEECCCCCCHHHHHHH-HHHHHHh-------cCCeEEEEEcc-ccHHHHHHHHHHcCCChh---------------
Confidence 45688999999999976444 3333322 14568888754 555677777766643211
Q ss_pred HHHHhcCCcEEEe---ChHHHHHHHHccCCccCCccEEEEcCcchhhc
Q 010649 216 VRDLQKGVEIVIA---TPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 260 (505)
Q Consensus 216 ~~~~~~~~~Iiv~---T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~ 260 (505)
++.+. ..+.+...+.. .+.++||+|+++.+..
T Consensus 136 --------~l~~~~e~~l~~i~~~i~~-----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 136 --------NLYLLAETNLEAILATIEE-----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred --------cEEEeCCCCHHHHHHHHHh-----hCCCEEEEechhhhcc
Confidence 01122 22334344332 2567999999997754
No 332
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.38 E-value=0.1 Score=55.73 Aligned_cols=139 Identities=21% Similarity=0.164 Sum_probs=78.4
Q ss_pred cHHHHH---HHHHHhcCC--cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcC
Q 010649 123 TPIQAQ---GWPMALKGR--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (505)
Q Consensus 123 ~~~Q~~---~i~~~l~~~--~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~ 197 (505)
|.-|.+ .+..++..+ -+++.|+-|=|||.+.=+++ ..+.... ....++|.+|+.+-++.+.+.+.+-..
T Consensus 213 T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~-~~~~~~~-----~~~~iiVTAP~~~nv~~Lf~fa~~~l~ 286 (758)
T COG1444 213 TEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIAL-AAAARLA-----GSVRIIVTAPTPANVQTLFEFAGKGLE 286 (758)
T ss_pred ChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHH-HHHHHhc-----CCceEEEeCCCHHHHHHHHHHHHHhHH
Confidence 444555 455555543 47888999999998765544 2222211 034699999999988888777665433
Q ss_pred CCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCC
Q 010649 198 SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPD 277 (505)
Q Consensus 198 ~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~ 277 (505)
..+.+..+...... .....-.+...|=+.+|.... ..-++||+|||=.|. .+.+.+++...+
T Consensus 287 ~lg~~~~v~~d~~g--~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp----lplL~~l~~~~~-- 348 (758)
T COG1444 287 FLGYKRKVAPDALG--EIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP----LPLLHKLLRRFP-- 348 (758)
T ss_pred HhCCcccccccccc--ceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC----hHHHHHHHhhcC--
Confidence 33222111110000 000000011224445553321 116799999998775 677777776643
Q ss_pred CceEEecCCC
Q 010649 278 RQTLYWSATW 287 (505)
Q Consensus 278 ~~~v~~SAT~ 287 (505)
.++||.|+
T Consensus 349 --rv~~sTTI 356 (758)
T COG1444 349 --RVLFSTTI 356 (758)
T ss_pred --ceEEEeee
Confidence 57788885
No 333
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.37 E-value=0.21 Score=50.56 Aligned_cols=40 Identities=15% Similarity=0.143 Sum_probs=23.7
Q ss_pred cCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
.....++|+||+|.+.... ...+.+.++..++...+|+.+
T Consensus 125 ~~~~kvvIIdea~~l~~~~-~~~LLk~LEep~~~t~~Il~t 164 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIAA-FNAFLKTLEEPPPHAIFIFAT 164 (397)
T ss_pred cCCeEEEEEeChhhCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 4567899999999987532 233444444443444444433
No 334
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.35 E-value=0.12 Score=51.47 Aligned_cols=136 Identities=18% Similarity=0.116 Sum_probs=64.4
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCC---CCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchH
Q 010649 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG---DGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~---~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 214 (505)
-.++.+|.|+||+..+.. +...++........ ..+..+-+|+.-.-+. .+.. +...++..+.-.... ...
T Consensus 43 A~Lf~Gp~G~GK~~lA~~-~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~----~i~~-~~HPDl~~i~~~~~~-~~~ 115 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYR-MARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR----RIAA-GAHGGLLTLERSWNE-KGK 115 (365)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHhCCCCCCCCccccccccccCCCCChHHH----HHHc-cCCCCeEEEeccccc-ccc
Confidence 489999999999987554 44555543211110 1122344444322221 1111 223333332211000 000
Q ss_pred HHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCCC
Q 010649 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW 287 (505)
Q Consensus 215 ~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~ 287 (505)
.....|.|-....+.+.+.. ........++||||+|.|.... .+.+.++++..+....+|++|...
T Consensus 116 -----~~~~~I~VdqiR~l~~~~~~-~~~~~~~kVviIDead~m~~~a-anaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 116 -----RLRTVITVDEVRELISFFGL-TAAEGGWRVVIVDTADEMNANA-ANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred -----cccccccHHHHHHHHHHhCc-CcccCCCEEEEEechHhcCHHH-HHHHHHHHhcCCCCeEEEEEECCc
Confidence 00123433333333333332 2234567899999999886433 455666666655556566655553
No 335
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.34 E-value=0.09 Score=55.19 Aligned_cols=39 Identities=13% Similarity=0.111 Sum_probs=24.3
Q ss_pred CCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
....++|+||||.|.... ...+.+.++..++...+|+++
T Consensus 118 ~~~KVIIIDEad~Lt~~A-~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTSA-WNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred CCcEEEEEechHhCCHHH-HHHHHHHHHhCCCcEEEEEEC
Confidence 456789999999886432 344555555554455455544
No 336
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.33 E-value=0.1 Score=54.42 Aligned_cols=92 Identities=18% Similarity=0.254 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhC-CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Q 010649 328 SQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAA 405 (505)
Q Consensus 328 ~~k~~~l~~~l~~~-~~~~~vlVF~~~~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~ 405 (505)
..|-...+.++... ..++++||.++++.-+..+++.|++. +..+..+|++++..+|..+..+..+|+.+|+|+|..+-
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal 87 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL 87 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH
Confidence 44555544444433 34568999999999999999999764 67789999999999999999999999999999995433
Q ss_pred ccCCCCCCCEEEEcC
Q 010649 406 RGLDVKDVKYVINYD 420 (505)
Q Consensus 406 ~Gidi~~~~~Vi~~~ 420 (505)
. +.++++.+||.-+
T Consensus 88 f-~p~~~l~lIIVDE 101 (505)
T TIGR00595 88 F-LPFKNLGLIIVDE 101 (505)
T ss_pred c-CcccCCCEEEEEC
Confidence 2 4566778777443
No 337
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.33 E-value=0.093 Score=56.88 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=24.5
Q ss_pred CccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCCChHH
Q 010649 246 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKE 290 (505)
Q Consensus 246 ~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~ 290 (505)
+..+|||||+|++... +...++..+ ...++++.++|-++.
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~l-E~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWV-ENGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHh-cCceEEEEEecCCCh
Confidence 4568999999997632 223333333 345677777775443
No 338
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.30 E-value=0.12 Score=51.58 Aligned_cols=90 Identities=17% Similarity=0.285 Sum_probs=51.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 215 (505)
|.-+++.+++|+|||..++. +...+... +.+++|+.-. +-..|+...+.+++.... ...+..
T Consensus 82 GslvLI~G~pG~GKStLllq-~a~~~a~~-------g~~VlYvs~E-Es~~qi~~Ra~rlg~~~~--~l~l~~------- 143 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQ-VAARLAKR-------GGKVLYVSGE-ESPEQIKLRADRLGISTE--NLYLLA------- 143 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHH-HHHHHHhc-------CCeEEEEECC-cCHHHHHHHHHHcCCCcc--cEEEEc-------
Confidence 45689999999999986444 33333221 4568888764 445666666666542210 000110
Q ss_pred HHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhh
Q 010649 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (505)
Q Consensus 216 ~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~ 259 (505)
-...+.+.+.+.. .+.++||||+++.+.
T Consensus 144 -----------e~~le~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 144 -----------ETNLEDILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred -----------cCcHHHHHHHHHh-----cCCcEEEEcchHHhh
Confidence 0122344444432 256799999999875
No 339
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.28 E-value=0.083 Score=50.75 Aligned_cols=20 Identities=25% Similarity=0.212 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~ 155 (505)
+.++++.+|+|+|||.++..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALR 77 (284)
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 45799999999999987643
No 340
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.27 E-value=0.025 Score=59.59 Aligned_cols=68 Identities=19% Similarity=0.133 Sum_probs=49.3
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHH-HHHHh
Q 010649 121 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQ-ESTKF 195 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~~--~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~-~~~~~ 195 (505)
..+|||.+.+.++... +.++++.++-+|||.+.+. ++-....+. ...+|++.||.++|..+.+ .+...
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n-~~g~~i~~~------P~~~l~v~Pt~~~a~~~~~~rl~Pm 86 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLN-WIGYSIDQD------PGPMLYVQPTDDAAKDFSKERLDPM 86 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHh-hceEEEEeC------CCCEEEEEEcHHHHHHHHHHHHHHH
Confidence 5689999999887754 5689999999999996444 333333321 3349999999999988773 34443
No 341
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.27 E-value=0.084 Score=58.82 Aligned_cols=82 Identities=18% Similarity=0.266 Sum_probs=67.4
Q ss_pred HHHhhcCCCeEEEEeCCcccHHHHHHHHHh----CCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc-ccccccCCCC
Q 010649 337 LLEDIMDGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGLDVK 411 (505)
Q Consensus 337 ~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT-~~~~~Gidi~ 411 (505)
++.....+.+++|.++|..-|...+..+++ .++.+..+++..+..++..+++.+++|+.+|+|+| ..+...+.+.
T Consensus 493 ~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~ 572 (926)
T TIGR00580 493 AFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFK 572 (926)
T ss_pred HHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcc
Confidence 344444567999999999999998887765 35677889999999999999999999999999999 4566678888
Q ss_pred CCCEEEE
Q 010649 412 DVKYVIN 418 (505)
Q Consensus 412 ~~~~Vi~ 418 (505)
++.+||.
T Consensus 573 ~L~llVI 579 (926)
T TIGR00580 573 DLGLLII 579 (926)
T ss_pred cCCEEEe
Confidence 8888773
No 342
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=95.23 E-value=0.25 Score=43.27 Aligned_cols=141 Identities=16% Similarity=0.150 Sum_probs=64.1
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHH
Q 010649 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 218 (505)
Q Consensus 139 ~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~ 218 (505)
+.+.--.|-|||.+++--++..+.. +.+|+|+-=.+.- ...-+...+....++.....--+.........
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~--------G~rV~ivQFlKg~--~~~GE~~~l~~l~~~~~~~~g~~f~~~~~~~~ 75 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGH--------GMRVLIVQFLKGG--RYSGELKALKKLPNVEIERFGKGFVWRMNEEE 75 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCT--------T--EEEEESS--S--S--HHHHHHGGGT--EEEE--TT----GGGHH
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhC--------CCEEEEEEEecCC--CCcCHHHHHHhCCeEEEEEcCCcccccCCCcH
Confidence 3444558889999988767766554 7789998655540 01122222211111222111111000000000
Q ss_pred HhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCC--HHHHHHHHHhcCCCCceEEecCCChHHHHHHHH
Q 010649 219 LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF--EPQIKKILSQIRPDRQTLYWSATWPKEVEHLAR 296 (505)
Q Consensus 219 ~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~--~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~ 296 (505)
.+ ........+.... ...-..+++||+||+-...+.++ ...+..+++..++...+|+.--.+|+++.+.+.
T Consensus 76 ----~~--~~~~~~~~~~a~~-~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 76 ----ED--RAAAREGLEEAKE-AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp ----HH--HHHHHHHHHHHHH-HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-S
T ss_pred ----HH--HHHHHHHHHHHHH-HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCC
Confidence 00 0011111122111 22235789999999998887764 456777777777777777776777777776653
No 343
>PRK05973 replicative DNA helicase; Provisional
Probab=95.18 E-value=0.12 Score=47.79 Aligned_cols=56 Identities=20% Similarity=0.179 Sum_probs=37.3
Q ss_pred HHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 132 MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 132 ~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
-+..|.-++|.|++|+|||..++-.+...+.. +.+++|++-- +=..|+.+.+..++
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~--------Ge~vlyfSlE-es~~~i~~R~~s~g 115 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKS--------GRTGVFFTLE-YTEQDVRDRLRALG 115 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc--------CCeEEEEEEe-CCHHHHHHHHHHcC
Confidence 34456678999999999998766544444332 5568887643 33566777777664
No 344
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.17 E-value=0.075 Score=51.67 Aligned_cols=66 Identities=23% Similarity=0.216 Sum_probs=43.3
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHh-cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHH
Q 010649 112 QEISKAGFFEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (505)
Q Consensus 112 ~~l~~~~~~~~~~~Q~~~i~~~l-~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La 185 (505)
+.+.+.+. +++.|.+.|..+. .+.+++++++||||||.. +-+++..+...+ ...+++.+=.+.||.
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~-----~~~rivtiEd~~El~ 187 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA-----PEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC-----CCceEEEecCCcccc
Confidence 34444444 5677888776655 567899999999999975 444555543321 134677777777773
No 345
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.17 E-value=0.13 Score=54.62 Aligned_cols=40 Identities=13% Similarity=0.104 Sum_probs=25.0
Q ss_pred cCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
..+++++||||+|.|.... .+.+.+.++..+....+|+.|
T Consensus 122 ~g~~KV~IIDEvh~Ls~~a-~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNTA-FNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHhcccCCCCeEEEEEE
Confidence 3568899999999987544 333445555444444555444
No 346
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.10 E-value=0.16 Score=54.49 Aligned_cols=93 Identities=17% Similarity=0.215 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHHhC-C-CCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 010649 327 ESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMD-G-WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 403 (505)
Q Consensus 327 ~~~k~~~l~~~l~~~~-~~~~vlVF~~~~~~~~~l~~~L~~~-~-~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~ 403 (505)
.+.|-+.+++++.+.. .++.+||.++.+..+..+...|+.. + ..+..+|++++..+|.....+..+|+.+|+|.|..
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 4578888888887754 4668999999999999999999865 3 56899999999999999999999999999999954
Q ss_pred ccccCCCCCCCEEEEcC
Q 010649 404 AARGLDVKDVKYVINYD 420 (505)
Q Consensus 404 ~~~Gidi~~~~~Vi~~~ 420 (505)
+.- .-+++..+||..+
T Consensus 250 AvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 250 AVF-APVEDLGLVAIWD 265 (665)
T ss_pred eEE-eccCCCCEEEEEc
Confidence 321 4566777777444
No 347
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.07 E-value=0.3 Score=51.97 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=25.1
Q ss_pred cCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
..+.+++||||+|.|.... ...+.+.++..++...+|+.+
T Consensus 125 ~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 4567899999999987543 334445555544444445544
No 348
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.07 E-value=0.075 Score=49.76 Aligned_cols=39 Identities=31% Similarity=0.175 Sum_probs=25.9
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc
Q 010649 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P 180 (505)
.|.-+++.|++|+|||..++-.+...+... +..+++++.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~-------g~~vly~s~ 50 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQ-------GKPVLFFSL 50 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCceEEEeC
Confidence 455689999999999976554333333321 455888873
No 349
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.06 E-value=0.38 Score=42.31 Aligned_cols=54 Identities=20% Similarity=0.309 Sum_probs=30.4
Q ss_pred CCccEEEEcCcchhhc-CCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHH
Q 010649 245 RRVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQY 298 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~-~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~ 298 (505)
...+++|+|....... ......+..+.....++.-++.+++.-+.+..+.+..+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 3567899999887532 11233344444444456566667776555555555444
No 350
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.06 E-value=0.19 Score=49.80 Aligned_cols=42 Identities=19% Similarity=0.122 Sum_probs=28.3
Q ss_pred cCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCC
Q 010649 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT 286 (505)
.....++||||||.|.... .+.+.++++..+....++++|..
T Consensus 139 ~g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit~~ 180 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILISHS 180 (351)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEECC
Confidence 3467899999999986543 45566666665555555666533
No 351
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.05 E-value=0.13 Score=51.23 Aligned_cols=47 Identities=15% Similarity=0.226 Sum_probs=32.8
Q ss_pred CccEEEEcCcchhhcC-CCHHHHHHHHHhcC-CCCceEEecCCChHHHH
Q 010649 246 RVTYLVLDEADRMLDM-GFEPQIKKILSQIR-PDRQTLYWSATWPKEVE 292 (505)
Q Consensus 246 ~~~~lVlDEah~~~~~-~~~~~~~~il~~~~-~~~~~v~~SAT~~~~~~ 292 (505)
+++++++|.++.+... .....+-.++..+. ...|+|+.|..+|.++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 6889999999988754 23445555555554 34488888888887665
No 352
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.03 E-value=0.1 Score=48.27 Aligned_cols=125 Identities=15% Similarity=0.186 Sum_probs=66.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 215 (505)
|..+++.+++|+|||..++-.+...+... +.++++++-. +-..++.+.+..++-..
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~-------ge~vlyvs~e-e~~~~l~~~~~s~g~d~---------------- 74 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNF-------GEKVLYVSFE-EPPEELIENMKSFGWDL---------------- 74 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHH-------T--EEEEESS-S-HHHHHHHHHTTTS-H----------------
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhc-------CCcEEEEEec-CCHHHHHHHHHHcCCcH----------------
Confidence 46799999999999987665555555440 3347887743 44566777777664221
Q ss_pred HHHHhcCCcEEE------------eChHHHHHHHHccCCccCCccEEEEcCcchhhcCC----CHHHHHHHHHhcCCCCc
Q 010649 216 VRDLQKGVEIVI------------ATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG----FEPQIKKILSQIRPDRQ 279 (505)
Q Consensus 216 ~~~~~~~~~Iiv------------~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~----~~~~~~~il~~~~~~~~ 279 (505)
........+.+ ..++.+...+...... .+.+.+|+|-...+.... +...+..+...++....
T Consensus 75 -~~~~~~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~-~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~ 152 (226)
T PF06745_consen 75 -EEYEDSGKLKIIDAFPERIGWSPNDLEELLSKIREAIEE-LKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGV 152 (226)
T ss_dssp -HHHHHTTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHH-HTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTE
T ss_pred -HHHhhcCCEEEEecccccccccccCHHHHHHHHHHHHHh-cCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCC
Confidence 11111111111 2233333333321111 123799999999873222 34455556666655555
Q ss_pred eEEecCC
Q 010649 280 TLYWSAT 286 (505)
Q Consensus 280 ~v~~SAT 286 (505)
++++++.
T Consensus 153 t~llt~~ 159 (226)
T PF06745_consen 153 TTLLTSE 159 (226)
T ss_dssp EEEEEEE
T ss_pred EEEEEEc
Confidence 5556555
No 353
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.03 E-value=0.12 Score=56.72 Aligned_cols=72 Identities=22% Similarity=0.171 Sum_probs=53.2
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcC
Q 010649 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~ 197 (505)
..|+|-|.+++... ...++|.|..|||||.+.+- -+.++..... -...++|+++-|+.-|..+.+.+.++..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~-ria~Li~~~~---i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTH-RIAHLIAEKN---VAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHH-HHHHHHHcCC---CCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 35899999998753 46799999999999988444 3444443211 1134599999999999999999887754
No 354
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.01 E-value=0.084 Score=50.66 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchHHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~ 155 (505)
+.+++++|||+|||.+...
T Consensus 195 ~vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAK 213 (282)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3578889999999987543
No 355
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.01 E-value=0.11 Score=54.61 Aligned_cols=130 Identities=18% Similarity=0.168 Sum_probs=77.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC--CceEEEEECCCCchH
Q 010649 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS--KIKSTCIYGGVPKGP 214 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~--~i~~~~~~gg~~~~~ 214 (505)
+-.++..|=-.|||.... +++..+... -.+.++++++|.+..++.+.+++..+.... ...+..+.| ...
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s-----~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I-- 325 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALAT-----FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI-- 325 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHh-----CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE--
Confidence 568889999999998644 555544421 127789999999999999999888764321 111111122 100
Q ss_pred HHHHHhcC--CcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhc-CCCCceEEecCC
Q 010649 215 QVRDLQKG--VEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTLYWSAT 286 (505)
Q Consensus 215 ~~~~~~~~--~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~-~~~~~~v~~SAT 286 (505)
...+..+ ..|.+++. -......-..++++|||||+-+.+. .+..++-.+ ..+.++|++|.|
T Consensus 326 -~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I~ISS~ 389 (738)
T PHA03368 326 -SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKIIFVSST 389 (738)
T ss_pred -EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHH----HHHHHHHHHhccCccEEEEecC
Confidence 0011112 14555431 0111122346899999999988754 334443332 248889999977
No 356
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.035 Score=54.65 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=19.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhc
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNA 163 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~ 163 (505)
..|+|+.+|||||||+.+. .|+.+..
T Consensus 226 KSNvLllGPtGsGKTllaq--TLAr~ld 251 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQ--TLARVLD 251 (564)
T ss_pred cccEEEECCCCCchhHHHH--HHHHHhC
Confidence 4579999999999998654 4555554
No 357
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.97 E-value=0.39 Score=44.70 Aligned_cols=52 Identities=12% Similarity=0.102 Sum_probs=33.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
+.-+++.+++|+|||..+...+...+.. +.+++++.-.. -..++.+.+.+++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~--------g~~~~y~~~e~-~~~~~~~~~~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ--------GKKVYVITTEN-TSKSYLKQMESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC--------CCEEEEEEcCC-CHHHHHHHHHHCC
Confidence 4568889999999997655433333332 56688877643 3355666666664
No 358
>PRK04195 replication factor C large subunit; Provisional
Probab=94.97 E-value=0.2 Score=52.21 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~ 154 (505)
.+.+++.+|+|+|||..+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3579999999999998644
No 359
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.96 E-value=0.45 Score=52.29 Aligned_cols=19 Identities=26% Similarity=0.219 Sum_probs=16.1
Q ss_pred CcEEEEccCCCchHHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~ 155 (505)
.++++.+|+|+|||..+-.
T Consensus 204 ~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred CceEEECCCCCCHHHHHHH
Confidence 4799999999999987544
No 360
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.91 E-value=0.41 Score=46.00 Aligned_cols=129 Identities=21% Similarity=0.292 Sum_probs=73.5
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc--cHHHHHHHHHHHHHhcCCCCceEEEE-ECCCCchHH
Q 010649 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP--TRELAVQIQQESTKFGASSKIKSTCI-YGGVPKGPQ 215 (505)
Q Consensus 139 ~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P--t~~La~Q~~~~~~~~~~~~~i~~~~~-~gg~~~~~~ 215 (505)
+++++-.|+|||++ +.-+..++.. .+.+|++.+- .|+=|. +++..|+...++.++.- +|+.+..
T Consensus 142 il~vGVNG~GKTTT-IaKLA~~l~~-------~g~~VllaA~DTFRAaAi---EQL~~w~er~gv~vI~~~~G~DpAa-- 208 (340)
T COG0552 142 ILFVGVNGVGKTTT-IAKLAKYLKQ-------QGKSVLLAAGDTFRAAAI---EQLEVWGERLGVPVISGKEGADPAA-- 208 (340)
T ss_pred EEEEecCCCchHhH-HHHHHHHHHH-------CCCeEEEEecchHHHHHH---HHHHHHHHHhCCeEEccCCCCCcHH--
Confidence 78889999999987 3323334333 2677777765 344432 33333333344444331 2222211
Q ss_pred HHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcC-CCHHHHHHHHHhcCCCC------ceEEecCCCh
Q 010649 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDR------QTLYWSATWP 288 (505)
Q Consensus 216 ~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~-~~~~~~~~il~~~~~~~------~~v~~SAT~~ 288 (505)
...+-++.. .-+.+++|++|=|-|+-.. .....+++|.+.+.+.. -++.+-||..
T Consensus 209 ----------------VafDAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG 270 (340)
T COG0552 209 ----------------VAFDAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG 270 (340)
T ss_pred ----------------HHHHHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccC
Confidence 112222221 1346788899988887653 35677778777776554 3445589988
Q ss_pred HHHHHHHHHH
Q 010649 289 KEVEHLARQY 298 (505)
Q Consensus 289 ~~~~~~~~~~ 298 (505)
.+...-++.|
T Consensus 271 qnal~QAk~F 280 (340)
T COG0552 271 QNALSQAKIF 280 (340)
T ss_pred hhHHHHHHHH
Confidence 7776666665
No 361
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.88 E-value=0.076 Score=52.65 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=20.3
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhc
Q 010649 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNA 163 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~~~~l~~l~~ 163 (505)
.+..+++++|||||||.. +..++..+..
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHhh
Confidence 456699999999999976 4445555543
No 362
>PRK10867 signal recognition particle protein; Provisional
Probab=94.88 E-value=0.32 Score=49.36 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=14.7
Q ss_pred cEEEEccCCCchHHHHHH
Q 010649 138 DLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~ 155 (505)
-+++++++|+|||+++.-
T Consensus 102 vI~~vG~~GsGKTTtaak 119 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGK 119 (433)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 378889999999987554
No 363
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.87 E-value=0.081 Score=50.96 Aligned_cols=60 Identities=27% Similarity=0.152 Sum_probs=43.7
Q ss_pred cCCCCCcHHHHHHHHHHhcCC-cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHH
Q 010649 117 AGFFEPTPIQAQGWPMALKGR-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (505)
Q Consensus 117 ~~~~~~~~~Q~~~i~~~l~~~-~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La 185 (505)
-.|..+++-|...+..+...+ ++++++.||||||+. +- ++..... ..-+++.+-.|.||-
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LN-al~~~i~-------~~eRvItiEDtaELq 213 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LN-ALSGFID-------SDERVITIEDTAELQ 213 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HH-HHHhcCC-------CcccEEEEeehhhhc
Confidence 356688999999998888766 999999999999974 22 2222111 123799999988883
No 364
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.83 E-value=0.12 Score=54.53 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=15.3
Q ss_pred cEEEEccCCCchHHHHHH
Q 010649 138 DLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~ 155 (505)
-+|+++|.|+|||.++-+
T Consensus 40 ayLf~Gp~GtGKTt~Ak~ 57 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKI 57 (559)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378899999999988665
No 365
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.80 E-value=0.12 Score=52.97 Aligned_cols=19 Identities=26% Similarity=0.176 Sum_probs=15.4
Q ss_pred CcEEEEccCCCchHHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~ 155 (505)
+-+.+++|||+|||++...
T Consensus 257 ~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred cEEEEECCCCccHHHHHHH
Confidence 4578899999999987554
No 366
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.78 E-value=0.22 Score=49.80 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=18.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHh
Q 010649 137 RDLIGIAETGSGKTLAYLLPAIVHVN 162 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~~~l~~l~ 162 (505)
.++++.+|+|+|||.+.. .++.++.
T Consensus 41 ~~i~I~G~~GtGKT~l~~-~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTK-YVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHHHH-HHHHHHH
Confidence 579999999999997643 3555554
No 367
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.76 E-value=0.1 Score=50.81 Aligned_cols=66 Identities=26% Similarity=0.294 Sum_probs=43.3
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHH-hcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHH
Q 010649 111 MQEISKAGFFEPTPIQAQGWPMA-LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (505)
Q Consensus 111 ~~~l~~~~~~~~~~~Q~~~i~~~-l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 184 (505)
++.+.+.|+ +++.|.+.+..+ ..+++++++++||||||.. +-.++..+...+ ...+++++-.+.||
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~-----~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQD-----PTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcC-----CCceEEEEcCCCcc
Confidence 445545554 467788888754 4567899999999999964 444554432211 13467888887776
No 368
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.75 E-value=0.2 Score=51.60 Aligned_cols=17 Identities=29% Similarity=0.303 Sum_probs=14.9
Q ss_pred EEEEccCCCchHHHHHH
Q 010649 139 LIGIAETGSGKTLAYLL 155 (505)
Q Consensus 139 ~li~a~TGsGKT~~~~~ 155 (505)
+|+.+|+|+|||..+.+
T Consensus 39 ~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 39 YIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 69999999999987665
No 369
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.75 E-value=0.12 Score=53.64 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=17.4
Q ss_pred EEEEccCCCchHHHHHHHHHHHHh
Q 010649 139 LIGIAETGSGKTLAYLLPAIVHVN 162 (505)
Q Consensus 139 ~li~a~TGsGKT~~~~~~~l~~l~ 162 (505)
+++.+|+|+|||.++.+ +...+.
T Consensus 39 ~Lf~GppGtGKTTlA~~-lA~~l~ 61 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL-IAMAVN 61 (504)
T ss_pred EEEECCCCCCHHHHHHH-HHHHHh
Confidence 59999999999988654 444444
No 370
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.74 E-value=0.28 Score=53.53 Aligned_cols=20 Identities=25% Similarity=0.214 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~ 155 (505)
..++++.+|+|+|||..+-.
T Consensus 207 ~~n~LLvGppGvGKT~lae~ 226 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEG 226 (758)
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 35799999999999987543
No 371
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=94.67 E-value=0.031 Score=58.73 Aligned_cols=80 Identities=24% Similarity=0.458 Sum_probs=60.3
Q ss_pred HHHhcCCCcEEEEcccccccCCCCCCC--------EEEEcCCCCChhHHHHhhcccccCCCc-cEEEEEecCc---cHHH
Q 010649 388 SEFKAGKSPIMTATDVAARGLDVKDVK--------YVINYDFPGSLEDYVHRIGRTGRAGAK-GTAYTFFTAA---NARF 455 (505)
Q Consensus 388 ~~f~~g~~~vLVaT~~~~~Gidi~~~~--------~Vi~~~~p~s~~~~~Qr~GR~~R~g~~-g~~~~~~~~~---~~~~ 455 (505)
++|-+|+..|-|-..+++.||.+..-+ +-|-+.+|||...-+|..||++|..+- +--|+|+..+ +.++
T Consensus 851 qrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErRF 930 (1300)
T KOG1513|consen 851 QRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERRF 930 (1300)
T ss_pred hhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchHH
Confidence 456778888888889999999987543 345678999999999999999998763 5556655543 6677
Q ss_pred HHHHHHHHHHhC
Q 010649 456 AKELITILEEAG 467 (505)
Q Consensus 456 ~~~l~~~l~~~~ 467 (505)
+..+.+.|+..+
T Consensus 931 AS~VAKRLESLG 942 (1300)
T KOG1513|consen 931 ASIVAKRLESLG 942 (1300)
T ss_pred HHHHHHHHHhhc
Confidence 776666666554
No 372
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.67 E-value=0.39 Score=47.80 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=19.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhc
Q 010649 137 RDLIGIAETGSGKTLAYLLPAIVHVNA 163 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~~~l~~l~~ 163 (505)
.++++.++||+|||.+.-. ++.++..
T Consensus 43 ~n~~iyG~~GTGKT~~~~~-v~~~l~~ 68 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKF-VMEELEE 68 (366)
T ss_pred ccEEEECCCCCCHhHHHHH-HHHHHHh
Confidence 4699999999999987444 5566554
No 373
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.64 E-value=0.44 Score=46.56 Aligned_cols=39 Identities=13% Similarity=0.267 Sum_probs=25.5
Q ss_pred CccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecC
Q 010649 246 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 285 (505)
Q Consensus 246 ~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SA 285 (505)
...+||+||+|.+.... ...+..++....+...+|+.+.
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~~ 140 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSCN 140 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEeC
Confidence 46799999999886432 3455666666556666665543
No 374
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=94.63 E-value=0.19 Score=51.50 Aligned_cols=145 Identities=12% Similarity=0.096 Sum_probs=83.8
Q ss_pred CCCcHHHHHHHHHHhc------C----CcEEEEccCCCchHHHHH-HHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHH
Q 010649 120 FEPTPIQAQGWPMALK------G----RDLIGIAETGSGKTLAYL-LPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~------~----~~~li~a~TGsGKT~~~~-~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~ 188 (505)
..+-|||.-.+-.+.- + +..+|..|-+-|||..+. +.....+... ..+-.+.|++|+.+-+.+.
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-----~~~~~~~i~A~s~~qa~~~ 134 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-----RSGAGIYILAPSVEQAANS 134 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-----hcCCcEEEEeccHHHHHHh
Confidence 3678999999988772 1 247888999999996543 2222222221 2366799999999999888
Q ss_pred HHHHHHhcCCCC-ceEEEEECCCCchHHHHHHhcCCcEEEeChHH---HHHHHHc--cCCccCCccEEEEcCcchhhcCC
Q 010649 189 QQESTKFGASSK-IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGR---LIDMLES--HNTNLRRVTYLVLDEADRMLDMG 262 (505)
Q Consensus 189 ~~~~~~~~~~~~-i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~---l~~~l~~--~~~~l~~~~~lVlDEah~~~~~~ 262 (505)
...++....... +.. ......+....+... .+..+.. +..+-.+..+.|+||.|...+.+
T Consensus 135 F~~ar~mv~~~~~l~~--------------~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~ 200 (546)
T COG4626 135 FNPARDMVKRDDDLRD--------------LCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE 200 (546)
T ss_pred hHHHHHHHHhCcchhh--------------hhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH
Confidence 888776543322 110 000011111122111 1122222 22334567899999999877642
Q ss_pred CHHHHHHHHHhc--CCCCceEEecC
Q 010649 263 FEPQIKKILSQI--RPDRQTLYWSA 285 (505)
Q Consensus 263 ~~~~~~~il~~~--~~~~~~v~~SA 285 (505)
..+..+...+ +++.+++..|.
T Consensus 201 --~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 201 --DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred --HHHHHHHhhhccCcCceEEEEec
Confidence 4455544443 46677776664
No 375
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.60 E-value=0.34 Score=49.12 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=30.0
Q ss_pred CccEEEEcCcchhhc-CCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHc
Q 010649 246 RVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYL 299 (505)
Q Consensus 246 ~~~~lVlDEah~~~~-~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~ 299 (505)
.+++||+|=+-++.. ......+..+...+.++--++.++|+...+....++.|.
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~ 236 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFN 236 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHH
Confidence 456777777765432 112334444455555555566667776666666655553
No 376
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.59 E-value=0.14 Score=49.44 Aligned_cols=67 Identities=24% Similarity=0.335 Sum_probs=42.4
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHh-cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHH
Q 010649 111 MQEISKAGFFEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (505)
Q Consensus 111 ~~~l~~~~~~~~~~~Q~~~i~~~l-~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La 185 (505)
++.+.+.|. +++-|.+.+..+. .+.+++++++||||||.. +-.++..+... ....+++++-.+.||.
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~-----~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKN-----DPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhcc-----CCCceEEEECCchhhc
Confidence 444444443 4455666665544 567899999999999975 44455444331 1144688888888873
No 377
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.56 E-value=0.11 Score=51.65 Aligned_cols=43 Identities=19% Similarity=0.101 Sum_probs=27.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 184 (505)
...+++++|||||||.. +..++.++.... ...+++.+=...|+
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~~~-----~~~~IvtiEdp~E~ 191 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGETY-----PDRKIVTYEDPIEY 191 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHhcC-----CCceEEEEecCchh
Confidence 34689999999999975 455666665421 12345555444444
No 378
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=94.53 E-value=0.19 Score=52.66 Aligned_cols=89 Identities=17% Similarity=0.252 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeCCccc----HHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc-cc
Q 010649 329 QKYNKLVKLLEDIMDGSRILIFMDTKKG----CDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DV 403 (505)
Q Consensus 329 ~k~~~l~~~l~~~~~~~~vlVF~~~~~~----~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT-~~ 403 (505)
.-+-.++.++.....+.++.+.++|--- ++.+.+.|...++.+..+.|.+...+|.++++...+|+++++|.| ..
T Consensus 296 KTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHAL 375 (677)
T COG1200 296 KTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHAL 375 (677)
T ss_pred HHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchh
Confidence 3345566666677777899999999654 455566666678999999999999999999999999999999999 55
Q ss_pred ccccCCCCCCCEEE
Q 010649 404 AARGLDVKDVKYVI 417 (505)
Q Consensus 404 ~~~Gidi~~~~~Vi 417 (505)
+...+++.+.-+||
T Consensus 376 iQd~V~F~~LgLVI 389 (677)
T COG1200 376 IQDKVEFHNLGLVI 389 (677)
T ss_pred hhcceeecceeEEE
Confidence 67889999888887
No 379
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.2 Score=50.74 Aligned_cols=58 Identities=22% Similarity=0.360 Sum_probs=34.2
Q ss_pred CCCCCCCCcCCC---CCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHH
Q 010649 94 VPKPVKSFRDVG---FPDYVMQEISKA---GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 94 ~p~~~~~f~~~~---l~~~~~~~l~~~---~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~ 154 (505)
+..|-..|++++ |+.+.-+.+..+ ..+.|--+-+-.++++ +.+++.+|+|+|||+.+-
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HV---KGiLLyGPPGTGKTLiAR 274 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHV---KGILLYGPPGTGKTLIAR 274 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccce---eeEEEECCCCCChhHHHH
Confidence 445667788874 566665555432 2222222222222222 569999999999998643
No 380
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.37 E-value=0.2 Score=53.50 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=18.0
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHh
Q 010649 138 DLIGIAETGSGKTLAYLLPAIVHVN 162 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~~~l~~l~ 162 (505)
.+|+.+|.|+|||.++.. +...+.
T Consensus 40 a~Lf~Gp~G~GKttlA~~-lAk~L~ 63 (620)
T PRK14948 40 AYLFTGPRGTGKTSSARI-LAKSLN 63 (620)
T ss_pred eEEEECCCCCChHHHHHH-HHHHhc
Confidence 479999999999987665 444443
No 381
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.34 E-value=0.6 Score=45.52 Aligned_cols=55 Identities=25% Similarity=0.350 Sum_probs=33.5
Q ss_pred CCccEEEEcCcchhhcC-CCHHHHHHHHHhc------CCCCceEEecCCChHHHHHHHHHHc
Q 010649 245 RRVTYLVLDEADRMLDM-GFEPQIKKILSQI------RPDRQTLYWSATWPKEVEHLARQYL 299 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~-~~~~~~~~il~~~------~~~~~~v~~SAT~~~~~~~~~~~~~ 299 (505)
.++++||+|=+-++... .....+.++...+ .++..++.++||...+....+..+.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH 256 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH
Confidence 46789999999876532 2234555554432 2445678888987665444455553
No 382
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.30 E-value=0.072 Score=53.94 Aligned_cols=40 Identities=30% Similarity=0.401 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHhcCCc--EEEEccCCCchHHHHHHHHHHHHhc
Q 010649 123 TPIQAQGWPMALKGRD--LIGIAETGSGKTLAYLLPAIVHVNA 163 (505)
Q Consensus 123 ~~~Q~~~i~~~l~~~~--~li~a~TGsGKT~~~~~~~l~~l~~ 163 (505)
.+.|.+.+..+++... +++.+|||||||.+ +..++..+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 7888888888776554 77889999999987 6667777665
No 383
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.26 E-value=0.3 Score=47.57 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=36.7
Q ss_pred EEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCC
Q 010649 225 IVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (505)
Q Consensus 225 Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT 286 (505)
|-|-....+.+.+..... ....+++|||+||.|.... .+.+.++++..+ ...+|++|..
T Consensus 104 I~id~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPL-EAPRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred CcHHHHHHHHHHHccCcc-cCCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEECC
Confidence 333344445555554333 3578999999999987543 566777777665 5555555544
No 384
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=94.24 E-value=0.12 Score=48.83 Aligned_cols=40 Identities=20% Similarity=0.397 Sum_probs=25.1
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHH
Q 010649 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (505)
Q Consensus 139 ~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 184 (505)
.+|.+|||+||+- ++..+.......+ ..-.|++|+|.+-.
T Consensus 90 ~~VYGPTG~GKSq-----LlRNLis~~lI~P-~PETVfFItP~~~m 129 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ-----LLRNLISCQLIQP-PPETVFFITPQKDM 129 (369)
T ss_pred EEEECCCCCCHHH-----HHHHhhhcCcccC-CCCceEEECCCCCC
Confidence 5778999999995 3444443322222 24459999997643
No 385
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=94.24 E-value=0.098 Score=50.46 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=15.1
Q ss_pred cEEEEccCCCchHHHHHH
Q 010649 138 DLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~ 155 (505)
.+|+++|+|+|||..+-+
T Consensus 164 SmIlWGppG~GKTtlArl 181 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARL 181 (554)
T ss_pred ceEEecCCCCchHHHHHH
Confidence 599999999999976443
No 386
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.24 E-value=0.32 Score=46.07 Aligned_cols=52 Identities=13% Similarity=0.118 Sum_probs=31.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEccc---HHHHHHHHHHHHHh
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT---RELAVQIQQESTKF 195 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt---~~La~Q~~~~~~~~ 195 (505)
+.-+++.+++|+|||..++-.+...+.. +.+++|++-- ..+..++...+..+
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~--------Ge~vlyis~Ee~~~~~~~~l~~~a~~~ 90 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR--------GNPVLFVTVESPANFVYTSLKERAKAM 90 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC--------CCcEEEEEecCCchHHHHHHHHHHHHc
Confidence 4568999999999998755544443332 5568888732 33334444444444
No 387
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.23 E-value=0.31 Score=43.58 Aligned_cols=40 Identities=15% Similarity=0.271 Sum_probs=24.5
Q ss_pred cCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
.....++||||+|.+.... ...+.+.++..++...+|+++
T Consensus 94 ~~~~kviiide~~~l~~~~-~~~Ll~~le~~~~~~~~il~~ 133 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAA-ANALLKTLEEPPPNTLFILIT 133 (188)
T ss_pred cCCeEEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEEE
Confidence 4567899999999987532 344555555544444444443
No 388
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.21 E-value=0.12 Score=45.92 Aligned_cols=49 Identities=22% Similarity=0.281 Sum_probs=28.9
Q ss_pred HHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHH
Q 010649 131 PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (505)
Q Consensus 131 ~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~ 188 (505)
.++..++++++.+++|+|||..+.. +...+... +..|+++. ..+|...+
T Consensus 42 ~~~~~~~~l~l~G~~G~GKThLa~a-i~~~~~~~-------g~~v~f~~-~~~L~~~l 90 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTHLAVA-IANEAIRK-------GYSVLFIT-ASDLLDEL 90 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHHHHHH-HHHHHHHT-------T--EEEEE-HHHHHHHH
T ss_pred CCcccCeEEEEEhhHhHHHHHHHHH-HHHHhccC-------CcceeEee-cCceeccc
Confidence 3445678899999999999987554 44444442 55566654 44665544
No 389
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.15 E-value=2.5 Score=41.58 Aligned_cols=16 Identities=31% Similarity=0.632 Sum_probs=14.4
Q ss_pred CcEEEEccCCCchHHH
Q 010649 137 RDLIGIAETGSGKTLA 152 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~ 152 (505)
+.+|+.+|+|+|||+.
T Consensus 246 kgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLL 261 (491)
T ss_pred ceeeeeCCCCCcHHHH
Confidence 5799999999999975
No 390
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.12 E-value=1.1 Score=44.46 Aligned_cols=110 Identities=15% Similarity=0.180 Sum_probs=59.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 215 (505)
.+.+.+.++.|.|||+..-+ ....+-.. .+.+ ++..+...++++.+.++. +....
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~-f~~~lp~~------~k~R----~HFh~Fm~~vh~~l~~~~-----------~~~~~--- 116 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDL-FYDSLPIK------RKRR----VHFHEFMLDVHSRLHQLR-----------GQDDP--- 116 (362)
T ss_pred CceEEEECCCCCchhHHHHH-HHHhCCcc------cccc----ccccHHHHHHHHHHHHHh-----------CCCcc---
Confidence 35689999999999974222 22222110 1111 234466666777777654 11000
Q ss_pred HHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhc-CCCCceEEecCCChHHH
Q 010649 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTLYWSATWPKEV 291 (505)
Q Consensus 216 ~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~-~~~~~~v~~SAT~~~~~ 291 (505)
+ ..+.+.+ .....+|.|||+|. .|.+-.-.+..+++.+ .....+|+.|-+.|.++
T Consensus 117 ----------l----~~va~~l------~~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 117 ----------L----PQVADEL------AKESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred ----------H----HHHHHHH------HhcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 0 0111111 23456899999994 2222233344444443 46677888888888764
No 391
>PRK04328 hypothetical protein; Provisional
Probab=94.10 E-value=0.38 Score=45.23 Aligned_cols=52 Identities=19% Similarity=0.217 Sum_probs=35.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
|..+++.+++|+|||..++-.+...+.. +.++++++ +.+-..++.+.+..++
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~--------ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQM--------GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc--------CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 4568999999999997655544444433 45577776 4455556667766664
No 392
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.09 E-value=0.13 Score=54.99 Aligned_cols=42 Identities=21% Similarity=0.299 Sum_probs=37.3
Q ss_pred ccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCCCh
Q 010649 247 VTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWP 288 (505)
Q Consensus 247 ~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~ 288 (505)
.-++|+|+-|++.+......++.+++..+++...++.|=+-|
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 358999999999999888999999999999999999887744
No 393
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=93.98 E-value=0.19 Score=54.08 Aligned_cols=96 Identities=20% Similarity=0.289 Sum_probs=77.7
Q ss_pred eeeccChhHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHHhC-CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEE
Q 010649 321 HVDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKSQAERDWVLSEFKAGKSPIM 398 (505)
Q Consensus 321 ~~~~~~~~~k~~~l~~~l~~~~-~~~~vlVF~~~~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vL 398 (505)
.+.-+..+.|-+..++++.+.. .++.+||.++.+.....+...|+.. +.++..+|+++++.+|.....+.++|+.+|+
T Consensus 221 Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vV 300 (730)
T COG1198 221 LLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVV 300 (730)
T ss_pred eEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEE
Confidence 3455677888888888888754 4569999999999998888888754 7889999999999999999999999999999
Q ss_pred EEcccccccCCCCCCCEEE
Q 010649 399 TATDVAARGLDVKDVKYVI 417 (505)
Q Consensus 399 VaT~~~~~Gidi~~~~~Vi 417 (505)
|.|..+- =.-++++-+||
T Consensus 301 IGtRSAl-F~Pf~~LGLII 318 (730)
T COG1198 301 IGTRSAL-FLPFKNLGLII 318 (730)
T ss_pred EEechhh-cCchhhccEEE
Confidence 9994432 13455666666
No 394
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=93.89 E-value=0.43 Score=49.73 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=28.0
Q ss_pred cCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
.....++|+||||.|.... ...+.+.+...++...+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 4578899999999987543 445566666666666666555
No 395
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=93.87 E-value=0.32 Score=45.53 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.4
Q ss_pred cEEEEccCCCchHHHHHH
Q 010649 138 DLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~ 155 (505)
++++.+|+|.|||..+.+
T Consensus 54 HvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred eEEeeCCCCCcHHHHHHH
Confidence 599999999999986554
No 396
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.86 E-value=0.3 Score=55.94 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=63.4
Q ss_pred cCCCeEEEEeCCcccHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc-ccccccCCCCCCCEE
Q 010649 342 MDGSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGLDVKDVKYV 416 (505)
Q Consensus 342 ~~~~~vlVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT-~~~~~Gidi~~~~~V 416 (505)
..+.+++|.|+|+.-|..+++.+++. ++.+..+++..+..++..+++.+++|..+|+|+| ..+...+++.++.+|
T Consensus 647 ~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lL 726 (1147)
T PRK10689 647 ENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLL 726 (1147)
T ss_pred HcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEE
Confidence 45679999999999999998887652 4567789999999999999999999999999999 455556777788877
Q ss_pred E
Q 010649 417 I 417 (505)
Q Consensus 417 i 417 (505)
|
T Consensus 727 V 727 (1147)
T PRK10689 727 I 727 (1147)
T ss_pred E
Confidence 6
No 397
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.75 E-value=0.19 Score=49.30 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=29.3
Q ss_pred HhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHH
Q 010649 133 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (505)
Q Consensus 133 ~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La 185 (505)
+..+.+++++++||||||.. +-+++..+-. ..+++.+=.+.||.
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~ip~--------~~ri~tiEd~~El~ 200 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREIPA--------IERLITVEDAREIV 200 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhCCC--------CCeEEEecCCCccc
Confidence 34578999999999999974 4444444322 34577766666653
No 398
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.75 E-value=0.19 Score=49.67 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=26.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 184 (505)
+..+++++|||||||+. +..++..+... ...+++.+-...|+
T Consensus 122 ~g~ili~G~tGSGKTT~-l~al~~~i~~~------~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTT-LASMIDYINKN------AAGHIITIEDPIEY 163 (343)
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHhhCcC------CCCEEEEEcCChhh
Confidence 45689999999999976 34445444321 13456666655555
No 399
>PRK10436 hypothetical protein; Provisional
Probab=93.73 E-value=0.16 Score=52.09 Aligned_cols=40 Identities=35% Similarity=0.458 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHhc--CCcEEEEccCCCchHHHHHHHHHHHHhc
Q 010649 123 TPIQAQGWPMALK--GRDLIGIAETGSGKTLAYLLPAIVHVNA 163 (505)
Q Consensus 123 ~~~Q~~~i~~~l~--~~~~li~a~TGsGKT~~~~~~~l~~l~~ 163 (505)
.+.|.+.+..++. +.-+++++|||||||.+ +..++.++..
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~~~ 244 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTLNT 244 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhhCC
Confidence 4445566655543 33488999999999986 4456666543
No 400
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=93.66 E-value=0.27 Score=50.96 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchHHHH
Q 010649 136 GRDLIGIAETGSGKTLAY 153 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~ 153 (505)
.+.+++.+|+|+|||+.+
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 467999999999999863
No 401
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.65 E-value=0.81 Score=50.97 Aligned_cols=30 Identities=20% Similarity=0.131 Sum_probs=21.6
Q ss_pred HHHHHHHHhc------CCcEEEEccCCCchHHHHHH
Q 010649 126 QAQGWPMALK------GRDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 126 Q~~~i~~~l~------~~~~li~a~TGsGKT~~~~~ 155 (505)
|..-+..+.. ..+.++.+|+|+|||..+-.
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~ 227 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEG 227 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHH
Confidence 6665655442 24799999999999986543
No 402
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.55 E-value=0.71 Score=52.30 Aligned_cols=43 Identities=16% Similarity=0.257 Sum_probs=34.5
Q ss_pred CccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCCCh
Q 010649 246 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWP 288 (505)
Q Consensus 246 ~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~ 288 (505)
.--+||||++|.+.+......+..++...++...+|+.|-+.|
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 3458999999998766556788888988888899988887744
No 403
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=93.55 E-value=0.047 Score=48.31 Aligned_cols=46 Identities=26% Similarity=0.296 Sum_probs=30.4
Q ss_pred HHHHhcCCcEEEeChHHHHHHHHccCCc--cCCccEEEEcCcchhhcC
Q 010649 216 VRDLQKGVEIVIATPGRLIDMLESHNTN--LRRVTYLVLDEADRMLDM 261 (505)
Q Consensus 216 ~~~~~~~~~Iiv~T~~~l~~~l~~~~~~--l~~~~~lVlDEah~~~~~ 261 (505)
.+.....++|||+++..|++-....... ..+-.+|||||||.+.+.
T Consensus 113 ~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 113 ARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp HHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred HHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 3455567899999999887654332221 234478999999998653
No 404
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=93.53 E-value=0.98 Score=44.99 Aligned_cols=145 Identities=16% Similarity=0.108 Sum_probs=64.2
Q ss_pred EEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHH---HHHHHHHhcCCCCceEEEE--ECCCCchH
Q 010649 140 IGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ---IQQESTKFGASSKIKSTCI--YGGVPKGP 214 (505)
Q Consensus 140 li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q---~~~~~~~~~~~~~i~~~~~--~gg~~~~~ 214 (505)
++.++.|+|||.+..+.++.++...+ ....++++.....+... ....+..+... .+..... ......
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~-----~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-- 72 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP-----PGRRVIIASTYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRKII-- 72 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS-----S--EEEEEESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSEEE--
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC-----CCcEEEEecCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCcEE--
Confidence 46789999999988777777776642 12456666444455554 22333333333 2222111 110000
Q ss_pred HHHHHhcCCcEEEeChHHH--HHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCC--ChHH
Q 010649 215 QVRDLQKGVEIVIATPGRL--IDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT--WPKE 290 (505)
Q Consensus 215 ~~~~~~~~~~Iiv~T~~~l--~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT--~~~~ 290 (505)
+.++..|.+.+...- ..-+. -..++++++||+-.+.+..+...+............ +++|.| ....
T Consensus 73 ----~~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~p~~~~~~ 142 (384)
T PF03237_consen 73 ----LPNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSIR-MYISTPPNPGGW 142 (384)
T ss_dssp ----ETTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT--E-EEEEE---SSSH
T ss_pred ----ecCceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHHHhhhhcccCcce-EEeecCCCCCCc
Confidence 034455666663321 11111 146789999999887654434333333332222222 244443 3344
Q ss_pred HHHHHHHHccCC
Q 010649 291 VEHLARQYLYNP 302 (505)
Q Consensus 291 ~~~~~~~~~~~~ 302 (505)
...+......+.
T Consensus 143 ~~~~~~~~~~~~ 154 (384)
T PF03237_consen 143 FYEIFQRNLDDD 154 (384)
T ss_dssp HHHHHHHHHCTS
T ss_pred eeeeeehhhcCC
Confidence 555666555554
No 405
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.53 E-value=1.2 Score=45.61 Aligned_cols=37 Identities=27% Similarity=0.135 Sum_probs=23.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~ 179 (505)
|.-+++.|+||+|||..++-.+......+ +..|+|++
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~-------g~~v~~fS 230 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALRE-------GKPVLFFS 230 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCcEEEEE
Confidence 45588899999999976554333332221 44577776
No 406
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.52 E-value=0.83 Score=49.26 Aligned_cols=40 Identities=10% Similarity=0.066 Sum_probs=24.4
Q ss_pred cCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
..+..++|+||||.|.... ...+.+.+...++...+|+.+
T Consensus 116 ~g~~KV~IIDEa~~LT~~A-~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKSA-FNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred cCCCEEEEEEChhhCCHHH-HHHHHHHhhcCCCceEEEEEc
Confidence 4577899999999886432 334445555544444444444
No 407
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.50 E-value=1 Score=50.32 Aligned_cols=19 Identities=32% Similarity=0.260 Sum_probs=15.9
Q ss_pred CcEEEEccCCCchHHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~ 155 (505)
.+.++.+|+|+|||..+-.
T Consensus 195 ~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred CceEEEcCCCCCHHHHHHH
Confidence 5799999999999987543
No 408
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.46 E-value=0.55 Score=48.88 Aligned_cols=60 Identities=17% Similarity=0.127 Sum_probs=41.3
Q ss_pred HHHHHHhc-----CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 128 QGWPMALK-----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 128 ~~i~~~l~-----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
..++.++. |.-+++.+|+|+|||+.++-.+...+.. +.+++|++ ..|-..|+...+..++
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~--------ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN--------KERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC--------CCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 34555554 3568999999999998755533333222 56688887 4577788888888875
No 409
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.40 E-value=0.11 Score=57.54 Aligned_cols=99 Identities=16% Similarity=0.143 Sum_probs=75.1
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCC
Q 010649 344 GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPG 423 (505)
Q Consensus 344 ~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~ 423 (505)
..++|||+.--...+.+...+.-.++....--+ .++-...+..|++ --.+|+-++..+.|+|+-++.+|+..++-.
T Consensus 1221 qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~ePiL 1296 (1394)
T KOG0298|consen 1221 QEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLVEPIL 1296 (1394)
T ss_pred CceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc-ceEEEEEeccCcccccHHhhhhhheecccc
Confidence 348999998888888887777665554433332 2334456666765 333667778889999999999999999999
Q ss_pred ChhHHHHhhcccccCCCccEEEE
Q 010649 424 SLEDYVHRIGRTGRAGAKGTAYT 446 (505)
Q Consensus 424 s~~~~~Qr~GR~~R~g~~g~~~~ 446 (505)
++.+-.|.+||+.|.|++-..++
T Consensus 1297 N~~~E~QAigRvhRiGQ~~pT~V 1319 (1394)
T KOG0298|consen 1297 NPGDEAQAIGRVHRIGQKRPTFV 1319 (1394)
T ss_pred CchHHHhhhhhhhhcccccchhh
Confidence 99999999999999999754443
No 410
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=93.38 E-value=1.1 Score=39.50 Aligned_cols=52 Identities=19% Similarity=0.267 Sum_probs=38.0
Q ss_pred CccEEEEcCcchhhcCCC--HHHHHHHHHhcCCCCceEEecCCChHHHHHHHHH
Q 010649 246 RVTYLVLDEADRMLDMGF--EPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQ 297 (505)
Q Consensus 246 ~~~~lVlDEah~~~~~~~--~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~ 297 (505)
++++||+||.-..+..++ ...+..++..-+++..+|+.--..|+.+.+.+..
T Consensus 122 ~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 122 KYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred CCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 688999999998877663 3456666666666677776666678888777654
No 411
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.30 E-value=0.82 Score=50.97 Aligned_cols=19 Identities=37% Similarity=0.256 Sum_probs=16.3
Q ss_pred CcEEEEccCCCchHHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~ 155 (505)
.++++.+|+|+|||..+-.
T Consensus 201 ~n~lL~G~pGvGKTal~~~ 219 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEG 219 (821)
T ss_pred CCeEEECCCCCCHHHHHHH
Confidence 5799999999999987554
No 412
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.22 E-value=0.13 Score=50.52 Aligned_cols=44 Identities=23% Similarity=0.225 Sum_probs=29.7
Q ss_pred HhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHH
Q 010649 133 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (505)
Q Consensus 133 ~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La 185 (505)
+..+.+++++++||||||.. +-.++..+.. ..+++.+-.+.||.
T Consensus 159 v~~~~nilI~G~tGSGKTTl-l~aLl~~i~~--------~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTM-SKTLISAIPP--------QERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHH-HHHHHcccCC--------CCCEEEECCCcccc
Confidence 44678999999999999974 3334433221 34577777877773
No 413
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.20 E-value=0.13 Score=53.51 Aligned_cols=44 Identities=25% Similarity=0.319 Sum_probs=35.0
Q ss_pred CCCcHHHHHHHHHHh----cCCcEEEEccCCCchHHHHHHHHHHHHhc
Q 010649 120 FEPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNA 163 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l----~~~~~li~a~TGsGKT~~~~~~~l~~l~~ 163 (505)
++|+.+|.+.+..++ .|+-.|+..|||+|||+..+=.++..+..
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHH
Confidence 378999999987765 57888999999999999866666665543
No 414
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=93.18 E-value=0.68 Score=42.78 Aligned_cols=21 Identities=38% Similarity=0.393 Sum_probs=16.4
Q ss_pred hcCC-cEEEEccCCCchHHHHH
Q 010649 134 LKGR-DLIGIAETGSGKTLAYL 154 (505)
Q Consensus 134 l~~~-~~li~a~TGsGKT~~~~ 154 (505)
..++ -+.++++.|||||...-
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~R 69 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRR 69 (269)
T ss_pred hcCCceEEEEecCCCchhHHHH
Confidence 3455 57889999999998755
No 415
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=93.16 E-value=1.4 Score=38.75 Aligned_cols=52 Identities=19% Similarity=0.345 Sum_probs=39.8
Q ss_pred CCccEEEEcCcchhhcCCC--HHHHHHHHHhcCCCCceEEecCCChHHHHHHHH
Q 010649 245 RRVTYLVLDEADRMLDMGF--EPQIKKILSQIRPDRQTLYWSATWPKEVEHLAR 296 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~~~--~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~ 296 (505)
..+++||+||+-...+.++ ...+..+++..++...+|+.--.+|+++.+.+.
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCC
Confidence 5689999999998887763 456777788777777777777778887776653
No 416
>PF05729 NACHT: NACHT domain
Probab=93.16 E-value=0.76 Score=39.69 Aligned_cols=25 Identities=24% Similarity=0.151 Sum_probs=17.6
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhc
Q 010649 138 DLIGIAETGSGKTLAYLLPAIVHVNA 163 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~~~l~~l~~ 163 (505)
-++|.|++|+|||..+ .-++..+..
T Consensus 2 ~l~I~G~~G~GKStll-~~~~~~~~~ 26 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL-RKLAQQLAE 26 (166)
T ss_pred EEEEECCCCCChHHHH-HHHHHHHHh
Confidence 4789999999999763 334444444
No 417
>PHA00012 I assembly protein
Probab=93.14 E-value=2.7 Score=40.53 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=19.4
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhc
Q 010649 139 LIGIAETGSGKTLAYLLPAIVHVNA 163 (505)
Q Consensus 139 ~li~a~TGsGKT~~~~~~~l~~l~~ 163 (505)
.++.+..|+|||+.++.-++..+.+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHc
Confidence 4788999999999877756555544
No 418
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.09 E-value=1 Score=46.37 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=24.3
Q ss_pred CCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
.+..++||||+|.+.... ...+.+.++..++...+|+.+
T Consensus 120 ~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred CCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEEEe
Confidence 467899999999986432 344555555544444445444
No 419
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=93.06 E-value=0.48 Score=43.74 Aligned_cols=52 Identities=23% Similarity=0.231 Sum_probs=35.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
+.-+++.+++|+|||..++-.+...+.. +..+++++.. +-..++.+.+..++
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~--------g~~~~y~s~e-~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN--------GEKAMYISLE-EREERILGYAKSKG 67 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--------CCeEEEEECC-CCHHHHHHHHHHcC
Confidence 4568999999999997655434433332 5568887664 45677777777764
No 420
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.04 E-value=0.71 Score=46.54 Aligned_cols=144 Identities=17% Similarity=0.089 Sum_probs=78.1
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHH
Q 010649 109 YVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (505)
Q Consensus 109 ~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~ 188 (505)
.+++.++. ++..+-..|.++.-..-.|.. .+.+=.|||||...+.-+ .++.. +....+++|.+-|+.|+.++
T Consensus 151 a~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Ka-a~lh~-----knPd~~I~~Tfftk~L~s~~ 222 (660)
T COG3972 151 ALLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKA-AELHS-----KNPDSRIAFTFFTKILASTM 222 (660)
T ss_pred HHHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHH-HHHhc-----CCCCceEEEEeehHHHHHHH
Confidence 34444443 233445566665433334443 566778999998633322 22222 22366799999999999999
Q ss_pred HHHHHHhcCC--------CCceEEEEECCCCchHHHHHHhcCC---cEEEeChH----HHHHHHHccCCccCCccEEEEc
Q 010649 189 QQESTKFGAS--------SKIKSTCIYGGVPKGPQVRDLQKGV---EIVIATPG----RLIDMLESHNTNLRRVTYLVLD 253 (505)
Q Consensus 189 ~~~~~~~~~~--------~~i~~~~~~gg~~~~~~~~~~~~~~---~Iiv~T~~----~l~~~l~~~~~~l~~~~~lVlD 253 (505)
.....+|+.. ..+.+..-.||............-| .+-+.--+ -+...+.....+..-+++|.+|
T Consensus 223 r~lv~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ilID 302 (660)
T COG3972 223 RTLVPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINNKKAYDYILID 302 (660)
T ss_pred HHHHHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhccccccEEEec
Confidence 9888887522 1234445566665544333322222 22222111 1111111222335668999999
Q ss_pred Ccchhhc
Q 010649 254 EADRMLD 260 (505)
Q Consensus 254 Eah~~~~ 260 (505)
|++-+.+
T Consensus 303 E~QDFP~ 309 (660)
T COG3972 303 ESQDFPQ 309 (660)
T ss_pred ccccCCH
Confidence 9997654
No 421
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.04 E-value=0.68 Score=44.88 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchHHHH
Q 010649 136 GRDLIGIAETGSGKTLAY 153 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~ 153 (505)
-+.+|+.+|+|+|||+.+
T Consensus 185 PKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 185 PKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CCceEeeCCCCCcHHHHH
Confidence 367999999999999863
No 422
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.03 E-value=0.11 Score=49.28 Aligned_cols=28 Identities=32% Similarity=0.438 Sum_probs=21.0
Q ss_pred hcCCcEEEEccCCCchHHHHHHHHHHHHhc
Q 010649 134 LKGRDLIGIAETGSGKTLAYLLPAIVHVNA 163 (505)
Q Consensus 134 l~~~~~li~a~TGsGKT~~~~~~~l~~l~~ 163 (505)
++..|+++.+|||||||+.+. .++.++.
T Consensus 95 L~KSNILLiGPTGsGKTlLAq--TLAk~Ln 122 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQ--TLAKILN 122 (408)
T ss_pred eeeccEEEECCCCCcHHHHHH--HHHHHhC
Confidence 345689999999999998655 4555554
No 423
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=93.01 E-value=0.84 Score=44.90 Aligned_cols=41 Identities=12% Similarity=0.205 Sum_probs=28.9
Q ss_pred cCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecC
Q 010649 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 285 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SA 285 (505)
....+++||||+|+|.... .+.+.+.++..++...+|+.|.
T Consensus 108 ~~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEEEeC
Confidence 4567899999999987653 5566677776666666666444
No 424
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=92.95 E-value=0.099 Score=48.58 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=12.2
Q ss_pred EEEEccCCCchHHH
Q 010649 139 LIGIAETGSGKTLA 152 (505)
Q Consensus 139 ~li~a~TGsGKT~~ 152 (505)
+++.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999985
No 425
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.91 E-value=0.73 Score=47.39 Aligned_cols=98 Identities=15% Similarity=0.174 Sum_probs=55.8
Q ss_pred HHHHHhc-----CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceE
Q 010649 129 GWPMALK-----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKS 203 (505)
Q Consensus 129 ~i~~~l~-----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~ 203 (505)
.++.++. |.-+++.+++|+|||..++. ++..+... +.+++|+..- +-..|+...+.+++-.. ..
T Consensus 82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq-~a~~~a~~-------g~kvlYvs~E-Es~~qi~~ra~rlg~~~--~~ 150 (454)
T TIGR00416 82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQ-VACQLAKN-------QMKVLYVSGE-ESLQQIKMRAIRLGLPE--PN 150 (454)
T ss_pred HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHH-HHHHHHhc-------CCcEEEEECc-CCHHHHHHHHHHcCCCh--HH
Confidence 4455553 45689999999999986554 33333321 3468888764 45567776666654211 00
Q ss_pred EEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhc
Q 010649 204 TCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 260 (505)
Q Consensus 204 ~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~ 260 (505)
..+.. -.+.+.+...+.. .+.++||+|.+..+..
T Consensus 151 l~~~~------------------e~~~~~I~~~i~~-----~~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 151 LYVLS------------------ETNWEQICANIEE-----ENPQACVIDSIQTLYS 184 (454)
T ss_pred eEEcC------------------CCCHHHHHHHHHh-----cCCcEEEEecchhhcc
Confidence 00100 0233445444433 2467899999997653
No 426
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=92.84 E-value=0.24 Score=48.09 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=28.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 186 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~ 186 (505)
|+-+.+.+|+|+|||..++-.+. ..... +..++++..-..+..
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~-~~~~~-------g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIA-EAQKA-------GGTAAFIDAEHALDP 97 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-HHHHc-------CCcEEEEcccchhHH
Confidence 45688999999999987555333 33321 555788766544443
No 427
>PRK13764 ATPase; Provisional
Probab=92.84 E-value=0.24 Score=52.30 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=27.1
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHH
Q 010649 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 184 (505)
..+++++++|||||||.. +.+++.++... +..++.+--.+|+
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~~~-------~riV~TiEDp~El 297 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYADM-------GKIVKTMESPRDL 297 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHhhC-------CCEEEEECCCccc
Confidence 357899999999999975 44455555432 3334455444555
No 428
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=92.82 E-value=0.36 Score=48.66 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.4
Q ss_pred CcEEEEccCCCchHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~ 154 (505)
+.+++.+|+|+|||+.+-
T Consensus 166 ~gvLL~GppGtGKT~lAk 183 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAK 183 (389)
T ss_pred CceEEECCCCCChHHHHH
Confidence 579999999999998643
No 429
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=92.81 E-value=0.59 Score=46.81 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=21.0
Q ss_pred HHHhcCCcEEEEccCCCchHHHHHH
Q 010649 131 PMALKGRDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 131 ~~~l~~~~~li~a~TGsGKT~~~~~ 155 (505)
+++..+.|++..+|+|+|||..|..
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHH
Confidence 6667889999999999999976553
No 430
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.80 E-value=1.1 Score=47.27 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=22.7
Q ss_pred cCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEE
Q 010649 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLY 282 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~ 282 (505)
..+.+++|+||+|.+.... .+.+.+.++..++...+|+
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a-~naLLK~LEepp~~~vfI~ 154 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSA-FNALLKTIEEPPPYIVFIF 154 (563)
T ss_pred cCCCEEEEEEChhhcCHHH-HHHHHHhhccCCCCEEEEE
Confidence 4577899999999986543 3334444444333333333
No 431
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=92.76 E-value=0.2 Score=52.97 Aligned_cols=153 Identities=16% Similarity=0.215 Sum_probs=88.4
Q ss_pred CCCcHHHHHHHHHHhc--------CC--cEEEEccCCCch--HHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHH
Q 010649 120 FEPTPIQAQGWPMALK--------GR--DLIGIAETGSGK--TLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ 187 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~--------~~--~~li~a~TGsGK--T~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q 187 (505)
..+...|.+++-.+-+ |. ..||-...|.|| |.+-+ |+...+. ..+++|++.-+..|-..
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgi--IfeNyLk-------GRKrAlW~SVSsDLKfD 333 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGI--IFENYLK-------GRKRALWFSVSSDLKFD 333 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEE--Eehhhhc-------ccceeEEEEeccccccc
Confidence 3567789888866543 22 255554555555 65433 3444333 25779999999889777
Q ss_pred HHHHHHHhcCCCCceEEEEEC----CCCchHHHHHHhcCCcEEEeChHHHHHHHHcc-CC-----------ccCCc-cEE
Q 010649 188 IQQESTKFGASSKIKSTCIYG----GVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-NT-----------NLRRV-TYL 250 (505)
Q Consensus 188 ~~~~~~~~~~~~~i~~~~~~g----g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~-~~-----------~l~~~-~~l 250 (505)
....+...+.. +|.|..+.. ..+..+. . .-...|++||+..|+-.-... .. .-.+| .+|
T Consensus 334 AERDL~DigA~-~I~V~alnK~KYakIss~en-~--n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvI 409 (1300)
T KOG1513|consen 334 AERDLRDIGAT-GIAVHALNKFKYAKISSKEN-T--NTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVI 409 (1300)
T ss_pred hhhchhhcCCC-Cccceehhhccccccccccc-C--CccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeE
Confidence 77777776543 355544321 1111000 0 112369999998776433211 00 01122 589
Q ss_pred EEcCcchhhcC---------CCHHHHHHHHHhcCCCCceEEecCC
Q 010649 251 VLDEADRMLDM---------GFEPQIKKILSQIRPDRQTLYWSAT 286 (505)
Q Consensus 251 VlDEah~~~~~---------~~~~~~~~il~~~~~~~~~v~~SAT 286 (505)
||||||...+. ..+..+..+-..+ |+.++|..|||
T Consensus 410 vfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~L-P~ARVVYASAT 453 (1300)
T KOG1513|consen 410 VFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKL-PNARVVYASAT 453 (1300)
T ss_pred EehhhhhhcccccccCCCcCcccHhHHHHHHhC-CCceEEEeecc
Confidence 99999976541 1344555555555 67788999999
No 432
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.72 E-value=0.4 Score=52.77 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=15.1
Q ss_pred CcEEEEccCCCchHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~ 154 (505)
+.+++.+|+|+|||+.+-
T Consensus 488 ~giLL~GppGtGKT~lak 505 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAK 505 (733)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 568999999999998643
No 433
>PRK09354 recA recombinase A; Provisional
Probab=92.69 E-value=0.34 Score=47.55 Aligned_cols=43 Identities=23% Similarity=0.156 Sum_probs=29.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 186 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~ 186 (505)
|+-+.+.+|+|+|||..++..+...... +..++|+..-..+-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~--------G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA--------GGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--------CCcEEEECCccchHH
Confidence 4568899999999998766544433322 566888887665653
No 434
>PRK06904 replicative DNA helicase; Validated
Probab=92.68 E-value=1.9 Score=44.64 Aligned_cols=114 Identities=18% Similarity=0.068 Sum_probs=54.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECC-CCchHH
Q 010649 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGG-VPKGPQ 215 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg-~~~~~~ 215 (505)
.=+++.|.||.|||..++- +..++... .+..|+|++.- .-..|+...+-..... +....+..+ .-...+
T Consensus 222 ~LiiIaarPg~GKTafaln-ia~~~a~~------~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~--v~~~~i~~g~~l~~~e 291 (472)
T PRK06904 222 DLIIVAARPSMGKTTFAMN-LCENAAMA------SEKPVLVFSLE-MPAEQIMMRMLASLSR--VDQTKIRTGQNLDQQD 291 (472)
T ss_pred cEEEEEeCCCCChHHHHHH-HHHHHHHh------cCCeEEEEecc-CCHHHHHHHHHHhhCC--CCHHHhccCCCCCHHH
Confidence 4478889999999975543 33333211 14457777542 3334444443332222 111111122 112222
Q ss_pred HH-------HHhcCCcEEE-----eChHHHHHHHHccCCccCCccEEEEcCcchhhc
Q 010649 216 VR-------DLQKGVEIVI-----ATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 260 (505)
Q Consensus 216 ~~-------~~~~~~~Iiv-----~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~ 260 (505)
+. .+.....+.| .|+..+...+......-..+++||||=.+.|..
T Consensus 292 ~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 292 WAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 21 2222344655 345555443322111112578999999887754
No 435
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.67 E-value=0.62 Score=49.80 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=26.7
Q ss_pred ccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCC
Q 010649 243 NLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (505)
Q Consensus 243 ~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT 286 (505)
.....+++||||+|.+.... ...+.++++..+....+|+ .+|
T Consensus 118 ~~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~tifIL-~tt 159 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYAIFIL-ATT 159 (614)
T ss_pred ccCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCeEEEE-EeC
Confidence 35678899999999986543 4455566665544444444 444
No 436
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=92.55 E-value=0.95 Score=45.02 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=17.4
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHh
Q 010649 138 DLIGIAETGSGKTLAYLLPAIVHVN 162 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~~~l~~l~ 162 (505)
.+++.+|.|+|||..+.. +...+.
T Consensus 38 ~~Ll~G~~G~GKt~~a~~-la~~l~ 61 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARI-FAKALN 61 (355)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHhc
Confidence 478999999999976544 444444
No 437
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.52 E-value=0.22 Score=48.48 Aligned_cols=18 Identities=28% Similarity=0.226 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~ 154 (505)
.++++.+|+|+|||..+.
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 458999999999997543
No 438
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.49 E-value=1 Score=42.00 Aligned_cols=56 Identities=18% Similarity=0.215 Sum_probs=32.1
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCC----CCCCCEEEEEc---ccHHHHHHHHHHHH
Q 010649 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLA----PGDGPIVLVLA---PTRELAVQIQQEST 193 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~----~~~~~~vlil~---Pt~~La~Q~~~~~~ 193 (505)
-.++.||.|+|||..++-.++....-.+... ...+.+|||++ |..++...+.....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~ 65 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQ 65 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHh
Confidence 3689999999999876654444332222211 12355688888 44444444444333
No 439
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=92.43 E-value=0.4 Score=52.41 Aligned_cols=71 Identities=23% Similarity=0.292 Sum_probs=55.2
Q ss_pred HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC----C-CCeEE-EcCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 010649 333 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD----G-WPALS-IHGDKSQAERDWVLSEFKAGKSPIMTATDVA 404 (505)
Q Consensus 333 ~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~----~-~~~~~-lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~ 404 (505)
.++.+.-.. .++++++.++|..-+.+.++.|++. + +.+.. +|+.++..+++.++++|.+|..+|||+|+.+
T Consensus 115 ~~~sl~~a~-kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 115 LLMSLYLAK-KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHHHHh-cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 344443333 4579999999999888888887653 2 44433 8999999999999999999999999999543
No 440
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=92.42 E-value=0.65 Score=46.31 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=19.4
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHH
Q 010649 135 KGRDLIGIAETGSGKTLAYLLPAIVHV 161 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~~~~l~~l 161 (505)
.|+.+++.+|+|+|||..+.. +...+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~-i~~~I 192 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQK-IAQAI 192 (415)
T ss_pred CCCEEEEECCCCCChhHHHHH-HHHhh
Confidence 578899999999999975333 44443
No 441
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.41 E-value=0.57 Score=44.33 Aligned_cols=112 Identities=18% Similarity=0.144 Sum_probs=56.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEccc---HHHHHHHHHHHHHhcCCCCceEEEEECCCCc
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT---RELAVQIQQESTKFGASSKIKSTCIYGGVPK 212 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt---~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~ 212 (505)
|.=+++.|.||.|||..++-.+...+... +..|++++.- .+++..+....... .. ..+..+...
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~-------~~~vly~SlEm~~~~l~~R~la~~s~v----~~--~~i~~g~l~ 85 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNG-------GYPVLYFSLEMSEEELAARLLARLSGV----PY--NKIRSGDLS 85 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTT-------SSEEEEEESSS-HHHHHHHHHHHHHTS----TH--HHHHCCGCH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhc-------CCeEEEEcCCCCHHHHHHHHHHHhhcc----hh--hhhhccccC
Confidence 34478889999999987665444444432 4668888763 34443333322221 10 001111111
Q ss_pred hHHHH-------HHhcCCcEE-EeC----hHHHHHHHHccCCccCCccEEEEcCcchhhcC
Q 010649 213 GPQVR-------DLQKGVEIV-IAT----PGRLIDMLESHNTNLRRVTYLVLDEADRMLDM 261 (505)
Q Consensus 213 ~~~~~-------~~~~~~~Ii-v~T----~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~ 261 (505)
..++. .+.. ..+. ..+ ++.+.+.+..-......+++||||=.|.+...
T Consensus 86 ~~e~~~~~~~~~~l~~-~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~ 145 (259)
T PF03796_consen 86 DEEFERLQAAAEKLSD-LPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSE 145 (259)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTS
T ss_pred HHHHHHHHHHHHHHhh-CcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCC
Confidence 12211 1222 2343 333 34455544432222267889999999987763
No 442
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.40 E-value=0.69 Score=47.99 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=23.3
Q ss_pred cCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEe
Q 010649 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYW 283 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~ 283 (505)
..+..++|+||||.+.... ...+.+.+...++...+|+.
T Consensus 117 ~~~~KVvIIDEad~Lt~~a-~naLLk~LEepp~~~v~Il~ 155 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEA-FNALLKTLEEPPPRTIFILC 155 (486)
T ss_pred cCCeeEEEEEChhhcCHHH-HHHHHHHHhcCCCCeEEEEE
Confidence 4567899999999886443 23444445544444444443
No 443
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.39 E-value=1.4 Score=45.05 Aligned_cols=69 Identities=19% Similarity=0.251 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHH----HHhc---C-----CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCC
Q 010649 104 VGFPDYVMQEISKAGFFEPTPIQAQGWP----MALK---G-----RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGD 171 (505)
Q Consensus 104 ~~l~~~~~~~l~~~~~~~~~~~Q~~~i~----~~l~---~-----~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~ 171 (505)
++.+++-++.+...|+..-.|.=.+.+. .+.+ . ..+++.+|.|||||..+.-.++ ...
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~----------~S~ 563 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIAL----------SSD 563 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHh----------hcC
Confidence 4677888888877776554444333332 2211 1 2489999999999964332222 123
Q ss_pred CCEEEEEcccH
Q 010649 172 GPIVLVLAPTR 182 (505)
Q Consensus 172 ~~~vlil~Pt~ 182 (505)
-|.+=|++|..
T Consensus 564 FPFvKiiSpe~ 574 (744)
T KOG0741|consen 564 FPFVKIISPED 574 (744)
T ss_pred CCeEEEeChHH
Confidence 67788888853
No 444
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=92.38 E-value=0.74 Score=47.92 Aligned_cols=124 Identities=16% Similarity=0.213 Sum_probs=76.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHH----HHhcCCCCceEEEEECCCCc
Q 010649 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES----TKFGASSKIKSTCIYGGVPK 212 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~----~~~~~~~~i~~~~~~gg~~~ 212 (505)
+-.+..-|--.|||+ ++.|++..++.. -.+-++.|++.-+-.++-+.+++ ++|.+...+ ...
T Consensus 203 kaTVFLVPRRHGKTW-f~VpiIsllL~s-----~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~v--i~~------ 268 (668)
T PHA03372 203 KATVFLVPRRHGKTW-FIIPIISFLLKN-----IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHT--IEN------ 268 (668)
T ss_pred cceEEEecccCCcee-hHHHHHHHHHHh-----hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccce--eee------
Confidence 457788899999997 488888888762 24788999999988777666554 444433211 111
Q ss_pred hHHHHHHhcCCcEEEeChHH-----HHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhc-CCCCceEEecCC
Q 010649 213 GPQVRDLQKGVEIVIATPGR-----LIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTLYWSAT 286 (505)
Q Consensus 213 ~~~~~~~~~~~~Iiv~T~~~-----l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~-~~~~~~v~~SAT 286 (505)
++-.|.+.-|+. +....+.....-++++++++||||-+. ...+..++..+ .++.++|+.|.|
T Consensus 269 --------k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 269 --------KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred --------cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeCC
Confidence 111233333321 111112223334678999999999776 44555555554 367788888877
No 445
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=92.21 E-value=0.16 Score=52.75 Aligned_cols=50 Identities=28% Similarity=0.438 Sum_probs=39.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
.++++.||||||||..+++|.+... ...++|.-|--+|.......+++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~----------~~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY----------PGSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc----------cCCEEEEECCCcHHHHHHHHHHHCC
Confidence 4799999999999999998876431 1148899999999887777777655
No 446
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.13 E-value=0.66 Score=51.77 Aligned_cols=19 Identities=32% Similarity=0.260 Sum_probs=15.9
Q ss_pred CcEEEEccCCCchHHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~ 155 (505)
.+.++.+|+|+|||..+-.
T Consensus 200 ~n~lL~G~pGvGKT~l~~~ 218 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEG 218 (857)
T ss_pred CceEEECCCCCCHHHHHHH
Confidence 4799999999999987543
No 447
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=92.07 E-value=0.97 Score=45.13 Aligned_cols=22 Identities=41% Similarity=0.451 Sum_probs=18.6
Q ss_pred HhcCCcEEEEccCCCchHHHHH
Q 010649 133 ALKGRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 133 ~l~~~~~li~a~TGsGKT~~~~ 154 (505)
.-.+..+++.++||+||++.+.
T Consensus 98 ap~~~~vLi~GetGtGKel~A~ 119 (403)
T COG1221 98 APSGLPVLIIGETGTGKELFAR 119 (403)
T ss_pred CCCCCcEEEecCCCccHHHHHH
Confidence 3467899999999999998755
No 448
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=92.05 E-value=0.19 Score=53.34 Aligned_cols=50 Identities=24% Similarity=0.264 Sum_probs=41.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
+++++.||||||||..+++|-+.... ..++|+=|--|+........++.+
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~----------~S~VV~DpKGEl~~~Ta~~R~~~G 208 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWE----------DSVVVHDIKLENYELTSGWREKQG 208 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCC----------CCEEEEeCcHHHHHHHHHHHHHCC
Confidence 46899999999999999999886532 238999999999988887777754
No 449
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=92.03 E-value=1.5 Score=42.97 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=32.4
Q ss_pred CCccEEEEcCcchhhcCC--CHHHHHHHHHhcCCCCceEEecCCChHH
Q 010649 245 RRVTYLVLDEADRMLDMG--FEPQIKKILSQIRPDRQTLYWSATWPKE 290 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~~--~~~~~~~il~~~~~~~~~v~~SAT~~~~ 290 (505)
...-++|+|-|+.+-|++ ..+.+.++-..++.+.-.+.+|+++.++
T Consensus 114 d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 114 DQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred CceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHH
Confidence 345689999999999887 3344445555556666678888887653
No 450
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=91.96 E-value=0.27 Score=51.95 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=28.1
Q ss_pred cCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
+++-.++|+||+-.-+|...+..+.+.+....+++-+++.|
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiIt 526 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVIT 526 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 45667899999888887766777777776665555444443
No 451
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=91.88 E-value=0.37 Score=45.70 Aligned_cols=54 Identities=22% Similarity=0.274 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHhc-C-CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHH
Q 010649 123 TPIQAQGWPMALK-G-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (505)
Q Consensus 123 ~~~Q~~~i~~~l~-~-~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 184 (505)
.+.|.+.|..++. . ..+++.++||||||.. +..++..+.. ...+++.+-...|+
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i~~-------~~~~iitiEdp~E~ 120 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSELNT-------PEKNIITVEDPVEY 120 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhhCC-------CCCeEEEECCCcee
Confidence 4445555555543 3 3588999999999975 3445555432 13346666554443
No 452
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=91.86 E-value=0.5 Score=44.32 Aligned_cols=20 Identities=30% Similarity=0.245 Sum_probs=17.0
Q ss_pred HhcCCcEEEEccCCCchHHH
Q 010649 133 ALKGRDLIGIAETGSGKTLA 152 (505)
Q Consensus 133 ~l~~~~~li~a~TGsGKT~~ 152 (505)
+-.|+.+++.+|.|+|||..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34688999999999999964
No 453
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=91.86 E-value=0.13 Score=51.81 Aligned_cols=48 Identities=23% Similarity=0.346 Sum_probs=36.9
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010649 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 195 (505)
+++++|+||||||..+++|.+... ...++|+-|--++........++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~----------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW----------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC----------CCCEEEEccchhHHHHHHHHHHHc
Confidence 478999999999999888866432 234899999999987766666554
No 454
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=91.83 E-value=0.91 Score=43.12 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=18.2
Q ss_pred HHHHHHhc-C--CcEEEEccCCCchHHH
Q 010649 128 QGWPMALK-G--RDLIGIAETGSGKTLA 152 (505)
Q Consensus 128 ~~i~~~l~-~--~~~li~a~TGsGKT~~ 152 (505)
..++.+.. + +++++.+|+|+|||+.
T Consensus 100 ~~l~~l~~~~~~~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 100 KLLPYLVRNNRVLNTLIISPPQCGKTTL 127 (270)
T ss_pred HHHHHHHhCCCeeEEEEEcCCCCCHHHH
Confidence 33455553 3 5789999999999974
No 455
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.81 E-value=0.96 Score=45.29 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=17.4
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHh
Q 010649 138 DLIGIAETGSGKTLAYLLPAIVHVN 162 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~~~l~~l~ 162 (505)
.+++.+|.|+|||..+.. +...+.
T Consensus 41 ~~L~~G~~G~GKt~~a~~-la~~l~ 64 (367)
T PRK14970 41 ALLFCGPRGVGKTTCARI-LARKIN 64 (367)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHhc
Confidence 588999999999976544 344433
No 456
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.74 E-value=3.1 Score=43.25 Aligned_cols=76 Identities=18% Similarity=0.257 Sum_probs=62.1
Q ss_pred CCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc-ccccC-------CCCCCC
Q 010649 343 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV-AARGL-------DVKDVK 414 (505)
Q Consensus 343 ~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~-~~~Gi-------di~~~~ 414 (505)
....+||.++++.-+......|...++++..+++..+..++..++.....++.+|+++|.- +.... ....+.
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~ 129 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGIT 129 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcC
Confidence 3567999999999999989999999999999999999999999999999999999999942 22222 345566
Q ss_pred EEEE
Q 010649 415 YVIN 418 (505)
Q Consensus 415 ~Vi~ 418 (505)
+||.
T Consensus 130 ~iVi 133 (470)
T TIGR00614 130 LIAV 133 (470)
T ss_pred EEEE
Confidence 6663
No 457
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.71 E-value=0.27 Score=46.89 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=29.4
Q ss_pred hcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHH
Q 010649 134 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (505)
Q Consensus 134 l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 184 (505)
..+.+++++++||||||.. +..++..+... ..+++++-.+.|+
T Consensus 125 ~~~~~ili~G~tGSGKTT~-l~all~~i~~~-------~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTL-LNALLEEIPPE-------DERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHH-HHHHHHHCHTT-------TSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchH-HHHHhhhcccc-------ccceEEeccccce
Confidence 3467899999999999975 44455554431 3567877777666
No 458
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=91.66 E-value=3 Score=44.36 Aligned_cols=65 Identities=22% Similarity=0.341 Sum_probs=39.1
Q ss_pred EECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcC
Q 010649 206 IYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR 275 (505)
Q Consensus 206 ~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~ 275 (505)
-.||.....+++-.++ ..+=+-|++++.-+..-... --++++||+|.|.....+..-..+++-+.
T Consensus 382 sLGGvrDEAEIRGHRR--TYIGamPGrIiQ~mkka~~~---NPv~LLDEIDKm~ss~rGDPaSALLEVLD 446 (782)
T COG0466 382 SLGGVRDEAEIRGHRR--TYIGAMPGKIIQGMKKAGVK---NPVFLLDEIDKMGSSFRGDPASALLEVLD 446 (782)
T ss_pred ecCccccHHHhccccc--cccccCChHHHHHHHHhCCc---CCeEEeechhhccCCCCCChHHHHHhhcC
Confidence 3466654444433222 34446799998877653321 12799999999987655555555555553
No 459
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.62 E-value=1.1 Score=49.28 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchHHHH
Q 010649 136 GRDLIGIAETGSGKTLAY 153 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~ 153 (505)
++.+++.+|+|+|||+.+
T Consensus 212 ~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CceEEEECCCCCChHHHH
Confidence 467999999999999753
No 460
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=91.48 E-value=0.98 Score=50.54 Aligned_cols=82 Identities=18% Similarity=0.272 Sum_probs=68.8
Q ss_pred HHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc-ccccccCCC
Q 010649 336 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGLDV 410 (505)
Q Consensus 336 ~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT-~~~~~Gidi 410 (505)
...+..+.+++|.|.|+|---|+.-++.+++. .+++..+.-=.+..+...+++..++|+++|+|.| .++...|-+
T Consensus 635 AAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~F 714 (1139)
T COG1197 635 AAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKF 714 (1139)
T ss_pred HHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEE
Confidence 34455667789999999988888877777653 4556677777889999999999999999999999 888999999
Q ss_pred CCCCEEE
Q 010649 411 KDVKYVI 417 (505)
Q Consensus 411 ~~~~~Vi 417 (505)
.++-+||
T Consensus 715 kdLGLlI 721 (1139)
T COG1197 715 KDLGLLI 721 (1139)
T ss_pred ecCCeEE
Confidence 9999887
No 461
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.45 E-value=0.69 Score=46.36 Aligned_cols=53 Identities=26% Similarity=0.344 Sum_probs=30.6
Q ss_pred CCccEEEEcCcchhhcCC--------CHHHHHHHHHh----cCCCCceEEecCC-ChHHHHHHHHH
Q 010649 245 RRVTYLVLDEADRMLDMG--------FEPQIKKILSQ----IRPDRQTLYWSAT-WPKEVEHLARQ 297 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~~--------~~~~~~~il~~----~~~~~~~v~~SAT-~~~~~~~~~~~ 297 (505)
....++++||+|.++..- .....+.++.. ..++-+++++.|| .|.++.+-+..
T Consensus 244 ~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~R 309 (428)
T KOG0740|consen 244 LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARR 309 (428)
T ss_pred cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHH
Confidence 356789999999876421 12222223222 2356688899999 34445444443
No 462
>COG1485 Predicted ATPase [General function prediction only]
Probab=91.30 E-value=5.3 Score=38.90 Aligned_cols=109 Identities=16% Similarity=0.141 Sum_probs=60.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHH
Q 010649 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 216 (505)
+.+-+.++.|.|||.. +-++-+...-. .-.-++...-..++++++..+-.. .
T Consensus 66 ~GlYl~GgVGrGKT~L--MD~Fy~~lp~~---------~k~R~HFh~FM~~vH~~l~~l~g~-----------~------ 117 (367)
T COG1485 66 RGLYLWGGVGRGKTML--MDLFYESLPGE---------RKRRLHFHRFMARVHQRLHTLQGQ-----------T------ 117 (367)
T ss_pred ceEEEECCCCccHHHH--HHHHHhhCCcc---------ccccccHHHHHHHHHHHHHHHcCC-----------C------
Confidence 5688999999999973 32332222110 112256667777778877775411 1
Q ss_pred HHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHh-cCCCCceEEecCCChHHH
Q 010649 217 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ-IRPDRQTLYWSATWPKEV 291 (505)
Q Consensus 217 ~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~-~~~~~~~v~~SAT~~~~~ 291 (505)
+.+-. +.+-+ ..+..+|.|||+|. .|.+=.-.+..+++. +...+.++..|-|.|+++
T Consensus 118 -------dpl~~----iA~~~------~~~~~vLCfDEF~V-tDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 118 -------DPLPP----IADEL------AAETRVLCFDEFEV-TDIADAMILGRLLEALFARGVVLVATSNTAPDNL 175 (367)
T ss_pred -------CccHH----HHHHH------HhcCCEEEeeeeee-cChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHh
Confidence 11100 00111 34567899999993 222212223333333 346788899999988765
No 463
>PRK09087 hypothetical protein; Validated
Probab=91.28 E-value=0.62 Score=43.05 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=25.5
Q ss_pred cEEEEcCcchhhcCCCHHHHHHHHHhcCC-CCceEEecCCChHH
Q 010649 248 TYLVLDEADRMLDMGFEPQIKKILSQIRP-DRQTLYWSATWPKE 290 (505)
Q Consensus 248 ~~lVlDEah~~~~~~~~~~~~~il~~~~~-~~~~v~~SAT~~~~ 290 (505)
++|++|++|.+.. ....+..++..+.. ..++|+.|.+.|..
T Consensus 89 ~~l~iDDi~~~~~--~~~~lf~l~n~~~~~g~~ilits~~~p~~ 130 (226)
T PRK09087 89 GPVLIEDIDAGGF--DETGLFHLINSVRQAGTSLLMTSRLWPSS 130 (226)
T ss_pred CeEEEECCCCCCC--CHHHHHHHHHHHHhCCCeEEEECCCChHH
Confidence 3799999997642 24556667766654 45555555555543
No 464
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.24 E-value=0.48 Score=42.34 Aligned_cols=32 Identities=31% Similarity=0.353 Sum_probs=25.0
Q ss_pred CCcHHHHHHHHHHh-cCCcEEEEccCCCchHHH
Q 010649 121 EPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLA 152 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l-~~~~~li~a~TGsGKT~~ 152 (505)
.+.+-|.+.+.... .+..+++++|||||||..
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34666777776655 577899999999999975
No 465
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=91.16 E-value=1.4 Score=43.80 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=20.1
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhc
Q 010649 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNA 163 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~~~~l~~l~~ 163 (505)
.|+..+|.||.|+|||..+.. +...+..
T Consensus 168 kGQR~lIvgppGvGKTTLaK~-Ian~I~~ 195 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQN-IANSITT 195 (416)
T ss_pred cCceEEEeCCCCCChhHHHHH-HHHHHHh
Confidence 578999999999999975332 4444443
No 466
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=90.98 E-value=2.4 Score=46.92 Aligned_cols=19 Identities=32% Similarity=0.214 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~ 154 (505)
+..+++.+|+|+|||..+-
T Consensus 347 ~~~lll~GppG~GKT~lAk 365 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGK 365 (775)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3468999999999997644
No 467
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=90.87 E-value=0.45 Score=49.34 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHhcCC-c-EEEEccCCCchHHHHHHHHHHHHh
Q 010649 123 TPIQAQGWPMALKGR-D-LIGIAETGSGKTLAYLLPAIVHVN 162 (505)
Q Consensus 123 ~~~Q~~~i~~~l~~~-~-~li~a~TGsGKT~~~~~~~l~~l~ 162 (505)
.+-|.+.+..+.... . +++++|||||||.. +..++..+.
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l~ 267 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRLN 267 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhccC
Confidence 666777777666543 3 68999999999986 344555543
No 468
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=90.71 E-value=0.62 Score=45.84 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=15.4
Q ss_pred CcEEEEccCCCchHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~ 154 (505)
..+++.+|+|+|||..+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 469999999999998654
No 469
>PF12846 AAA_10: AAA-like domain
Probab=90.61 E-value=0.41 Score=46.17 Aligned_cols=42 Identities=24% Similarity=0.401 Sum_probs=30.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 186 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~ 186 (505)
.++++.++||+|||.... .++..+... +..++++=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~~-------g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIRR-------GPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHc-------CCCEEEEcCCchHHH
Confidence 578999999999998755 455555542 566888877765544
No 470
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=90.45 E-value=0.56 Score=48.41 Aligned_cols=41 Identities=20% Similarity=0.244 Sum_probs=24.4
Q ss_pred ccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCC
Q 010649 243 NLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (505)
Q Consensus 243 ~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT 286 (505)
...++++.|+||+|.+....| +.+.+.++.-++. +++.=||
T Consensus 116 ~~~ryKVyiIDEvHMLS~~af-NALLKTLEEPP~h--V~FIlAT 156 (515)
T COG2812 116 SEGRYKVYIIDEVHMLSKQAF-NALLKTLEEPPSH--VKFILAT 156 (515)
T ss_pred ccccceEEEEecHHhhhHHHH-HHHhcccccCccC--eEEEEec
Confidence 356889999999998875553 3333334443333 3444444
No 471
>PTZ00146 fibrillarin; Provisional
Probab=90.45 E-value=5 Score=38.40 Aligned_cols=36 Identities=14% Similarity=0.081 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHHHHhcC--------CcEEEEccCCCchHHHHHH
Q 010649 120 FEPTPIQAQGWPMALKG--------RDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~--------~~~li~a~TGsGKT~~~~~ 155 (505)
..-.|++++.-.+++.+ .+.++-.-+|+|=|...+.
T Consensus 108 R~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lA 151 (293)
T PTZ00146 108 RVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVS 151 (293)
T ss_pred eeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHH
Confidence 34456666666666543 2356666688886655433
No 472
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=90.41 E-value=2.2 Score=41.67 Aligned_cols=40 Identities=5% Similarity=0.098 Sum_probs=26.9
Q ss_pred cCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
....+++|+||+|.|.... .+.+.+.++..++...+|+.+
T Consensus 91 ~~~~kv~iI~~ad~m~~~a-~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQA-QNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred cCCceEEEEechhhcCHHH-HHHHHHHhcCCCCCeEEEEEe
Confidence 4577899999999987543 455666666655555555544
No 473
>PRK08840 replicative DNA helicase; Provisional
Probab=90.40 E-value=3.7 Score=42.36 Aligned_cols=49 Identities=20% Similarity=0.047 Sum_probs=27.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 192 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 192 (505)
|.=+++.|.||.|||..++-.+......+ +..|+|.+.- .=..|+...+
T Consensus 217 g~LiviaarPg~GKTafalnia~~~a~~~-------~~~v~~fSlE-Ms~~ql~~Rl 265 (464)
T PRK08840 217 SDLIIVAARPSMGKTTFAMNLCENAAMDQ-------DKPVLIFSLE-MPAEQLMMRM 265 (464)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHhC-------CCeEEEEecc-CCHHHHHHHH
Confidence 44478889999999976544333322221 4457777542 2234444443
No 474
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=90.39 E-value=1.7 Score=38.91 Aligned_cols=61 Identities=26% Similarity=0.275 Sum_probs=33.5
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCC--CCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA--PGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~--~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
.|.-+++.|++|+|||...+-.+...+...+... ...+.+||++..--. ..++...+....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~ 93 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALL 93 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHh
Confidence 4556899999999999875543443333222211 113566888876544 456677776655
No 475
>CHL00176 ftsH cell division protein; Validated
Probab=90.38 E-value=2.7 Score=45.20 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~ 154 (505)
+.+++.+|+|+|||+.+-
T Consensus 217 ~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999998643
No 476
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.31 E-value=0.5 Score=45.99 Aligned_cols=56 Identities=23% Similarity=0.133 Sum_probs=37.7
Q ss_pred CCCcHHHHHHHH-HHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHH
Q 010649 120 FEPTPIQAQGWP-MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (505)
Q Consensus 120 ~~~~~~Q~~~i~-~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 184 (505)
..+.+.|..-+. ++..+++++++++||||||.. +.+++..+-. ..+++.+=-|.++
T Consensus 126 gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~--------~~rivtIEdt~E~ 182 (312)
T COG0630 126 GTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPP--------EERIVTIEDTPEL 182 (312)
T ss_pred CCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCc--------hhcEEEEeccccc
Confidence 345666665554 455678999999999999975 5555555433 3447777666665
No 477
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.30 E-value=1 Score=46.68 Aligned_cols=53 Identities=23% Similarity=0.270 Sum_probs=31.2
Q ss_pred CCCCCcCCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHH
Q 010649 97 PVKSFRDVGFPDYVMQEISKA---GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 152 (505)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~ 152 (505)
|-.+|++.+--+.+...|.-. .+. +|-+-+++-.- .-..+++++|+|+|||+.
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK--~pd~~k~lGi~-~PsGvLL~GPPGCGKTLl 561 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIK--RPDLFKALGID-APSGVLLCGPPGCGKTLL 561 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhcc--CHHHHHHhCCC-CCCceEEeCCCCccHHHH
Confidence 457788877656665555432 122 22222322211 135699999999999985
No 478
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=90.23 E-value=1.4 Score=40.59 Aligned_cols=44 Identities=27% Similarity=0.144 Sum_probs=26.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEccc
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt 181 (505)
|+-+.+.+++|+|||..++..+...+.... -.+....++++...
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~--~~g~~~~v~yi~~e 62 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGE--LGGLEGKVVYIDTE 62 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccc--cCCCcceEEEEecC
Confidence 456899999999999876553333322210 01112557777764
No 479
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=90.08 E-value=0.62 Score=49.41 Aligned_cols=39 Identities=31% Similarity=0.336 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHhcC--CcEEEEccCCCchHHHHHHHHHHHHh
Q 010649 123 TPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVN 162 (505)
Q Consensus 123 ~~~Q~~~i~~~l~~--~~~li~a~TGsGKT~~~~~~~l~~l~ 162 (505)
.+.|.+.+..++.. .-+++++|||||||.+ +..++..+.
T Consensus 301 ~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~~ 341 (564)
T TIGR02538 301 EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNILN 341 (564)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhhC
Confidence 56677777665543 3478999999999986 445666553
No 480
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=90.07 E-value=0.61 Score=44.17 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=37.4
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 010649 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~ 198 (505)
.++.+++.+++|+|||+-++-.+...+.. +-++++++-. +...++.+.+..|+-.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--------ge~vlyvs~~-e~~~~l~~~~~~~g~d 76 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE--------GEPVLYVSTE-ESPEELLENARSFGWD 76 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc--------CCcEEEEEec-CCHHHHHHHHHHcCCC
Confidence 35679999999999997644433333332 5557777754 6777788888776533
No 481
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=90.01 E-value=0.7 Score=43.00 Aligned_cols=103 Identities=12% Similarity=0.202 Sum_probs=68.5
Q ss_pred CCCeEEEcCCCCHHHHHHHHHHHhcCC----CcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhccc-ccCCCcc
Q 010649 368 GWPALSIHGDKSQAERDWVLSEFKAGK----SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRT-GRAGAKG 442 (505)
Q Consensus 368 ~~~~~~lhg~~~~~~r~~~~~~f~~g~----~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~-~R~g~~g 442 (505)
++.+..++++.+... -.|.++. ..|+|.=+.++||+.++++.+..+...+...+++.||.==- .|.|-..
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 455666665444322 2333333 66888999999999999999999999999888888884222 2666677
Q ss_pred EEEEEecCccHHHHHHHHHHHHHhCCCCCHHHHHhhc
Q 010649 443 TAYTFFTAANARFAKELITILEEAGQKVSPELAAMGR 479 (505)
Q Consensus 443 ~~~~~~~~~~~~~~~~l~~~l~~~~~~i~~~l~~~~~ 479 (505)
.|=++.++.-......+.+ ...++-++|.+|+.
T Consensus 185 l~Ri~~~~~l~~~f~~i~~----~~e~lr~~i~~~~~ 217 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIAE----AEEELREEIKEMAN 217 (239)
T ss_pred ceEEecCHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 8888887764444444443 34445556666654
No 482
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.98 E-value=3.2 Score=39.32 Aligned_cols=83 Identities=20% Similarity=0.327 Sum_probs=47.2
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCC-----cEEEEccCCCchHHHHHHHHHHHHhcCCCCCC
Q 010649 95 PKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGR-----DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAP 169 (505)
Q Consensus 95 p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~-----~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~ 169 (505)
.+|-..|++..=-+...++|+..=+. |+ -+|.+..|+ .+++.+|+|+||+..+- +... +
T Consensus 126 EKPNVkWsDVAGLE~AKeALKEAVIL---PI---KFPqlFtGkR~PwrgiLLyGPPGTGKSYLAK--AVAT--E------ 189 (439)
T KOG0739|consen 126 EKPNVKWSDVAGLEGAKEALKEAVIL---PI---KFPQLFTGKRKPWRGILLYGPPGTGKSYLAK--AVAT--E------ 189 (439)
T ss_pred cCCCCchhhhccchhHHHHHHhheee---cc---cchhhhcCCCCcceeEEEeCCCCCcHHHHHH--HHHh--h------
Confidence 34556787763333444555443211 11 134555554 48999999999996432 2221 1
Q ss_pred CCCCEEEEEcccHHHHHHHHHHHHHh
Q 010649 170 GDGPIVLVLAPTRELAVQIQQESTKF 195 (505)
Q Consensus 170 ~~~~~vlil~Pt~~La~Q~~~~~~~~ 195 (505)
.....+-+.+..|+..|.-+-.++
T Consensus 190 --AnSTFFSvSSSDLvSKWmGESEkL 213 (439)
T KOG0739|consen 190 --ANSTFFSVSSSDLVSKWMGESEKL 213 (439)
T ss_pred --cCCceEEeehHHHHHHHhccHHHH
Confidence 123677777888887776555544
No 483
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=89.97 E-value=0.48 Score=42.82 Aligned_cols=39 Identities=26% Similarity=0.341 Sum_probs=23.9
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHH
Q 010649 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (505)
Q Consensus 139 ~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 184 (505)
+++++|||||||+. +..++..+... .+.+++.+-...|+
T Consensus 4 ilI~GptGSGKTTl-l~~ll~~~~~~------~~~~i~t~e~~~E~ 42 (198)
T cd01131 4 VLVTGPTGSGKSTT-LAAMIDYINKN------KTHHILTIEDPIEF 42 (198)
T ss_pred EEEECCCCCCHHHH-HHHHHHHhhhc------CCcEEEEEcCCccc
Confidence 68899999999986 33345554431 13445665554443
No 484
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=89.95 E-value=0.47 Score=46.57 Aligned_cols=19 Identities=26% Similarity=0.135 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchHHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~ 155 (505)
+-+++.+|.|+|||+.+-.
T Consensus 149 lgllL~GPPGcGKTllAra 167 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCEL 167 (413)
T ss_pred eEEEeeCCCCCCHHHHHHH
Confidence 3478899999999987554
No 485
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=89.93 E-value=0.65 Score=49.54 Aligned_cols=41 Identities=37% Similarity=0.453 Sum_probs=29.6
Q ss_pred cCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
+++-.++|+|||..-+|..-+..+.+.+..+.+++.++..+
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIa 521 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIA 521 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEe
Confidence 45567999999999888877888888777665554444433
No 486
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=89.90 E-value=1.5 Score=45.92 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~ 154 (505)
+.+++.+|+|+|||+.+-
T Consensus 89 ~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 579999999999998643
No 487
>PRK08506 replicative DNA helicase; Provisional
Probab=89.78 E-value=2.7 Score=43.58 Aligned_cols=113 Identities=18% Similarity=0.096 Sum_probs=54.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 215 (505)
|.-+++.|.||.|||..++- ++.++..+ +..|+|++.- .=+.|+...+...... +....+..+.-....
T Consensus 192 G~LivIaarpg~GKT~fal~-ia~~~~~~-------g~~V~~fSlE-Ms~~ql~~Rlla~~s~--v~~~~i~~~~l~~~e 260 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLN-MALKALNQ-------DKGVAFFSLE-MPAEQLMLRMLSAKTS--IPLQNLRTGDLDDDE 260 (472)
T ss_pred CceEEEEcCCCCChHHHHHH-HHHHHHhc-------CCcEEEEeCc-CCHHHHHHHHHHHhcC--CCHHHHhcCCCCHHH
Confidence 34478889999999976554 33443321 4457777542 3334444444332111 111111111111122
Q ss_pred H-------HHHhcCCcEEEe-----ChHHHHHHHHccCCccCCccEEEEcCcchhhc
Q 010649 216 V-------RDLQKGVEIVIA-----TPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 260 (505)
Q Consensus 216 ~-------~~~~~~~~Iiv~-----T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~ 260 (505)
+ ..+.. ..+.|. |+..+...+.+-......+++||||=.+.|..
T Consensus 261 ~~~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~ 316 (472)
T PRK08506 261 WERLSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSG 316 (472)
T ss_pred HHHHHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccC
Confidence 2 12222 345442 44455444332111112578999999997753
No 488
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.71 E-value=2.8 Score=41.16 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=43.2
Q ss_pred CCccEEEEcCcchhhcC-CCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHc
Q 010649 245 RRVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYL 299 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~-~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~ 299 (505)
.+|++||+|-.-|.... +....+..+.+.+.|+.-++.+-|+.....+..++.|-
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk 237 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFK 237 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHH
Confidence 47889999998876543 24566777788888999999999999888888777764
No 489
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.70 E-value=5.2 Score=41.37 Aligned_cols=99 Identities=19% Similarity=0.223 Sum_probs=72.3
Q ss_pred cCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHH---HHHHh
Q 010649 144 ETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQ 220 (505)
Q Consensus 144 ~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~~~ 220 (505)
-.++||+...++++.+.+... -.|.+||.+-+.+-|.|.++++. ...++.+..++|..+.... +..++
T Consensus 365 lvF~gse~~K~lA~rq~v~~g------~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~FR 435 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVASG------FKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERFR 435 (593)
T ss_pred heeeecchhHHHHHHHHHhcc------CCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHHh
Confidence 457888888777555544432 36779999999999999999887 3456889999998654333 33343
Q ss_pred c-CCcEEEeChHHHHHHHHccCCccCCccEEEEcCcch
Q 010649 221 K-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (505)
Q Consensus 221 ~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~ 257 (505)
. ...++||| +++.++ .++..+.+||-++.-.
T Consensus 436 ~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 436 IGKIWVLICT-----DLLARG-IDFKGVNLVINYDFPQ 467 (593)
T ss_pred ccCeeEEEeh-----hhhhcc-ccccCcceEEecCCCc
Confidence 3 36799999 777775 7788999999977663
No 490
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=89.70 E-value=1.6 Score=45.71 Aligned_cols=68 Identities=29% Similarity=0.338 Sum_probs=54.0
Q ss_pred EEEEeCCcccHHHHHHHHHh----C-CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccccc-CCCCCCCE
Q 010649 347 ILIFMDTKKGCDQITRQLRM----D-GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-----VAARG-LDVKDVKY 415 (505)
Q Consensus 347 vlVF~~~~~~~~~l~~~L~~----~-~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~-----~~~~G-idi~~~~~ 415 (505)
+||+++|++-|..+++.+.. . ++.+..++|+.+...+...++ .| .+|||+|+ .+.++ +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 89999999999999888764 2 567889999998777665444 45 99999995 45555 88888888
Q ss_pred EEE
Q 010649 416 VIN 418 (505)
Q Consensus 416 Vi~ 418 (505)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 873
No 491
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=89.68 E-value=3.5 Score=42.28 Aligned_cols=113 Identities=17% Similarity=0.039 Sum_probs=53.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 215 (505)
|.-+++.|+||+|||..++-.+....... +..|++++.- .-..|+...+......... ..+..+.-...+
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~~-------g~~vl~~SlE-m~~~~i~~R~~~~~~~v~~--~~~~~g~l~~~~ 264 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIKE-------GKPVAFFSLE-MSAEQLAMRMLSSESRVDS--QKLRTGKLSDED 264 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhC-------CCeEEEEeCc-CCHHHHHHHHHHHhcCCCH--HHhccCCCCHHH
Confidence 34578899999999976544333323321 4457777643 2333344444333222111 111112111122
Q ss_pred H-------HHHhcCCcEEE-e----ChHHHHHHHHccCCccCCccEEEEcCcchhhc
Q 010649 216 V-------RDLQKGVEIVI-A----TPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 260 (505)
Q Consensus 216 ~-------~~~~~~~~Iiv-~----T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~ 260 (505)
+ ..+.. ..+.| . |+..+...+..... -..+++||||=.+.+..
T Consensus 265 ~~~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~-~~~~~~vvID~l~~i~~ 319 (434)
T TIGR00665 265 WEKLTSAAGKLSE-APLYIDDTPGLTITELRAKARRLKR-EHGLGLIVIDYLQLMSG 319 (434)
T ss_pred HHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcCC
Confidence 2 12222 34444 2 44445443332111 12478999999987753
No 492
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=89.65 E-value=0.31 Score=52.39 Aligned_cols=50 Identities=20% Similarity=0.285 Sum_probs=38.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
++++++||||||||..+++|-+..+. ..++|+=|--|+........++.+
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~----------gS~VV~DpKGE~~~~Ta~~R~~~G 189 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFK----------GSVIALDVKGELFELTSRARKASG 189 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCC----------CCEEEEeCCchHHHHHHHHHHhCC
Confidence 47999999999999999998765422 248888898888876666665543
No 493
>PRK08760 replicative DNA helicase; Provisional
Probab=89.39 E-value=2.2 Score=44.21 Aligned_cols=110 Identities=18% Similarity=0.076 Sum_probs=53.2
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHH-
Q 010649 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV- 216 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~- 216 (505)
=+++.|.||.|||..++-.+....... +..|+|.+.- .-..|+...+.......... .+..+.-...++
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~-------g~~V~~fSlE-Ms~~ql~~Rl~a~~s~i~~~--~i~~g~l~~~e~~ 300 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKS-------KKGVAVFSME-MSASQLAMRLISSNGRINAQ--RLRTGALEDEDWA 300 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhc-------CCceEEEecc-CCHHHHHHHHHHhhCCCcHH--HHhcCCCCHHHHH
Confidence 378889999999976554333322221 4447776542 22345555544432221111 111122122222
Q ss_pred ------HHHhcCCcEEEe-----ChHHHHHHHHccCCccCCccEEEEcCcchhh
Q 010649 217 ------RDLQKGVEIVIA-----TPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (505)
Q Consensus 217 ------~~~~~~~~Iiv~-----T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~ 259 (505)
..+. ...+.|. |++.+...+..-.. -..+++||||=.+.|.
T Consensus 301 ~~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 301 RVTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcC
Confidence 1222 2345443 34455443332111 1357899999998775
No 494
>PRK14701 reverse gyrase; Provisional
Probab=89.32 E-value=1.4 Score=52.32 Aligned_cols=61 Identities=16% Similarity=0.214 Sum_probs=53.2
Q ss_pred CCCeEEEEeCCcccHHHHHHHHHhC------CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 010649 343 DGSRILIFMDTKKGCDQITRQLRMD------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 403 (505)
Q Consensus 343 ~~~~vlVF~~~~~~~~~l~~~L~~~------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~ 403 (505)
.+.++||.++|+.-+.++++.|+.. +..+..+||+++..++..+++.+++|+.+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4558999999999999998888762 456788999999999999999999999999999954
No 495
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.28 E-value=0.81 Score=42.44 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=16.6
Q ss_pred EEEEccCCCchHHHHHHHHHHHHh
Q 010649 139 LIGIAETGSGKTLAYLLPAIVHVN 162 (505)
Q Consensus 139 ~li~a~TGsGKT~~~~~~~l~~l~ 162 (505)
++++++|||||+.+ +.+++.+-.
T Consensus 130 viiVGaTGSGKSTt-mAaMi~yRN 152 (375)
T COG5008 130 VIIVGATGSGKSTT-MAAMIGYRN 152 (375)
T ss_pred EEEECCCCCCchhh-HHHHhcccc
Confidence 78889999999976 444554433
No 496
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=89.24 E-value=0.47 Score=42.08 Aligned_cols=42 Identities=19% Similarity=0.323 Sum_probs=29.5
Q ss_pred CCccEEEEcCcchhhcCCCHHHHHHHHHhcCCC-CceEEecCC
Q 010649 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPD-RQTLYWSAT 286 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~-~~~v~~SAT 286 (505)
.+.+++++||...-+|......+..++..+... .++++.|--
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 466899999999988876666666666665333 566666543
No 497
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=89.17 E-value=1.1 Score=48.02 Aligned_cols=55 Identities=25% Similarity=0.375 Sum_probs=39.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccH--HHHHHHHHHHHHhcCC
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR--ELAVQIQQESTKFGAS 198 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~--~La~Q~~~~~~~~~~~ 198 (505)
..++++.++||+|||..+.. ++.+.... +..++++=|-- +|...+...++..+..
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~-l~~q~i~~-------g~~viv~DpKgD~~l~~~~~~~~~~~G~~ 232 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAEL-LITQDIRR-------GDVVIVIDPKGDADLKRRMRAEAKRAGRP 232 (634)
T ss_pred CCcEEEECCCCCCHHHHHHH-HHHHHHHc-------CCeEEEEeCCCchHHHHHHHHHHHHhCCC
Confidence 36799999999999987544 45444442 45688888864 3777777788777654
No 498
>PRK08006 replicative DNA helicase; Provisional
Probab=89.15 E-value=6 Score=40.95 Aligned_cols=113 Identities=17% Similarity=0.058 Sum_probs=53.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHH
Q 010649 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 216 (505)
.=+++.|.+|.|||..++-.+......+ +..|+|.+.- .=..|+...+-..... +....+..+.-...++
T Consensus 225 ~LiiIaarPgmGKTafalnia~~~a~~~-------g~~V~~fSlE-M~~~ql~~Rlla~~~~--v~~~~i~~~~l~~~e~ 294 (471)
T PRK08006 225 DLIIVAARPSMGKTTFAMNLCENAAMLQ-------DKPVLIFSLE-MPGEQIMMRMLASLSR--VDQTRIRTGQLDDEDW 294 (471)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhc-------CCeEEEEecc-CCHHHHHHHHHHHhcC--CCHHHhhcCCCCHHHH
Confidence 3478889999999976554333332221 4457777542 2233344333322111 1111111122122222
Q ss_pred HH-------HhcCCcEEEe-----ChHHHHHHHHccCCccCCccEEEEcCcchhh
Q 010649 217 RD-------LQKGVEIVIA-----TPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (505)
Q Consensus 217 ~~-------~~~~~~Iiv~-----T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~ 259 (505)
.. +.....+.|- |+..+.....+-......+++||||=.|.|.
T Consensus 295 ~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 295 ARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 21 2133455553 4444444332211111257899999999875
No 499
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.14 E-value=2.8 Score=44.63 Aligned_cols=41 Identities=32% Similarity=0.374 Sum_probs=31.9
Q ss_pred cCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecC
Q 010649 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 285 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SA 285 (505)
+++..++|+|||-.-+|..-+..+...+..+..+ ++++.=|
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-rTVlvIA 660 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQG-RTVLVIA 660 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcC-CeEEEEe
Confidence 5677899999999999987788888888877666 4444443
No 500
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.12 E-value=1.2 Score=43.85 Aligned_cols=16 Identities=31% Similarity=0.575 Sum_probs=14.6
Q ss_pred CcEEEEccCCCchHHH
Q 010649 137 RDLIGIAETGSGKTLA 152 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~ 152 (505)
+|++..+|+|+|||+.
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 6899999999999975
Done!